Query 012007
Match_columns 473
No_of_seqs 919 out of 2880
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 07:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2E-49 4.4E-54 342.5 26.1 294 115-461 107-447 (480)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-46 2.5E-51 325.5 26.1 316 70-451 109-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 9E-46 1.9E-50 324.0 21.2 276 121-451 173-458 (459)
4 KOG0286 G-protein beta subunit 100.0 7.6E-41 1.6E-45 280.0 30.6 288 115-451 47-343 (343)
5 KOG0315 G-protein beta subunit 100.0 3.5E-40 7.7E-45 269.9 27.7 275 134-460 11-295 (311)
6 KOG0279 G protein beta subunit 100.0 1.4E-39 3.1E-44 270.8 31.1 285 114-454 6-314 (315)
7 KOG0285 Pleiotropic regulator 100.0 7.1E-40 1.5E-44 281.2 26.9 302 94-455 129-441 (460)
8 KOG0645 WD40 repeat protein [G 100.0 7.9E-39 1.7E-43 265.2 31.4 289 115-453 6-311 (312)
9 KOG0272 U4/U6 small nuclear ri 100.0 3.6E-40 7.8E-45 288.9 19.4 241 114-393 208-458 (459)
10 KOG0282 mRNA splicing factor [ 100.0 7E-40 1.5E-44 291.9 17.3 287 112-451 203-503 (503)
11 KOG0265 U5 snRNP-specific prot 100.0 5E-38 1.1E-42 264.1 24.9 284 114-452 38-337 (338)
12 KOG0273 Beta-transducin family 100.0 1.2E-37 2.6E-42 276.6 28.0 283 119-457 174-486 (524)
13 KOG0284 Polyadenylation factor 100.0 1.6E-38 3.5E-43 277.3 21.1 276 126-455 101-382 (464)
14 KOG0281 Beta-TrCP (transducin 100.0 9E-39 1.9E-43 273.5 17.6 277 122-459 196-483 (499)
15 KOG0293 WD40 repeat-containing 100.0 1.4E-37 3.1E-42 271.7 23.1 286 115-455 216-515 (519)
16 KOG0318 WD40 repeat stress pro 100.0 9.4E-36 2E-40 268.0 35.3 329 114-458 181-565 (603)
17 KOG0295 WD40 repeat-containing 100.0 4.6E-37 9.9E-42 264.7 24.3 282 116-451 101-404 (406)
18 KOG0315 G-protein beta subunit 100.0 2.4E-36 5.1E-41 247.5 27.2 270 113-419 30-309 (311)
19 KOG0263 Transcription initiati 100.0 4.4E-37 9.6E-42 289.9 22.2 273 161-458 378-654 (707)
20 KOG0273 Beta-transducin family 100.0 2.8E-35 6E-40 261.7 29.8 274 123-453 235-523 (524)
21 KOG0319 WD40-repeat-containing 100.0 1.3E-35 2.8E-40 277.3 29.0 329 114-460 138-584 (775)
22 KOG0279 G protein beta subunit 100.0 2.3E-35 4.9E-40 245.8 27.3 252 154-457 8-266 (315)
23 KOG0266 WD40 repeat-containing 100.0 3.3E-35 7.1E-40 284.5 32.9 285 116-453 151-454 (456)
24 KOG0316 Conserved WD40 repeat- 100.0 3.5E-35 7.6E-40 238.8 24.9 278 116-452 10-298 (307)
25 KOG0296 Angio-associated migra 100.0 1.6E-34 3.5E-39 249.1 30.2 291 113-453 54-398 (399)
26 KOG0291 WD40-repeat-containing 100.0 3.6E-34 7.8E-39 268.0 33.8 328 114-463 136-518 (893)
27 KOG0313 Microtubule binding pr 100.0 3E-35 6.5E-40 254.8 24.1 282 122-454 104-419 (423)
28 cd00200 WD40 WD40 domain, foun 100.0 9.9E-34 2.1E-38 260.2 35.2 281 116-451 2-289 (289)
29 KOG0286 G-protein beta subunit 100.0 2.8E-34 6.1E-39 240.7 28.1 256 154-464 48-314 (343)
30 KOG0263 Transcription initiati 100.0 1.1E-34 2.3E-39 273.9 25.8 259 125-422 380-697 (707)
31 PLN00181 protein SPA1-RELATED; 100.0 3.2E-33 7E-38 290.6 37.8 282 118-452 478-792 (793)
32 KOG0319 WD40-repeat-containing 100.0 1.3E-34 2.8E-39 270.6 24.3 290 114-454 314-620 (775)
33 KOG0285 Pleiotropic regulator 100.0 2.4E-34 5.2E-39 247.3 22.1 249 152-457 142-393 (460)
34 KOG0291 WD40-repeat-containing 100.0 6E-33 1.3E-37 259.9 32.3 291 115-456 299-615 (893)
35 KOG0318 WD40 repeat stress pro 100.0 2.1E-32 4.6E-37 246.5 34.0 297 114-460 138-524 (603)
36 KOG0276 Vesicle coat complex C 100.0 4.6E-34 9.9E-39 262.0 23.3 248 155-456 7-260 (794)
37 KOG0292 Vesicle coat complex C 100.0 2.5E-33 5.4E-38 266.5 26.7 286 123-457 9-325 (1202)
38 KOG0274 Cdc4 and related F-box 100.0 8.2E-33 1.8E-37 266.7 29.3 280 122-461 207-490 (537)
39 KOG0643 Translation initiation 100.0 1.2E-32 2.5E-37 228.2 25.7 288 118-456 5-320 (327)
40 KOG0281 Beta-TrCP (transducin 100.0 6.8E-35 1.5E-39 249.7 12.8 238 160-458 196-433 (499)
41 KOG0284 Polyadenylation factor 100.0 1.4E-34 3.1E-39 252.7 15.1 243 161-458 96-342 (464)
42 KOG0265 U5 snRNP-specific prot 100.0 8.4E-33 1.8E-37 232.7 23.5 258 151-460 37-303 (338)
43 KOG0295 WD40 repeat-containing 100.0 3E-33 6.4E-38 241.2 21.2 270 134-458 77-369 (406)
44 KOG0316 Conserved WD40 repeat- 100.0 6.4E-33 1.4E-37 225.6 21.6 254 152-460 8-264 (307)
45 KOG0278 Serine/threonine kinas 100.0 1.4E-33 3.1E-38 231.3 15.8 284 118-458 9-302 (334)
46 KOG0306 WD40-repeat-containing 100.0 1.1E-31 2.5E-36 251.2 29.0 337 114-468 98-637 (888)
47 KOG0645 WD40 repeat protein [G 100.0 4E-31 8.7E-36 219.6 28.9 249 153-454 6-262 (312)
48 KOG0276 Vesicle coat complex C 100.0 9.3E-32 2E-36 246.9 25.8 285 117-457 7-302 (794)
49 KOG0277 Peroxisomal targeting 100.0 7.7E-32 1.7E-36 221.8 21.3 260 142-452 37-308 (311)
50 KOG0300 WD40 repeat-containing 100.0 1.4E-31 3.1E-36 226.9 21.4 325 112-456 137-479 (481)
51 KOG0266 WD40 repeat-containing 100.0 6.8E-31 1.5E-35 254.4 29.3 253 160-464 158-420 (456)
52 KOG0275 Conserved WD40 repeat- 100.0 1.5E-32 3.3E-37 233.4 15.0 278 123-451 213-507 (508)
53 KOG0289 mRNA splicing factor [ 100.0 1.6E-30 3.5E-35 229.1 27.4 277 124-452 220-505 (506)
54 KOG0292 Vesicle coat complex C 100.0 1.9E-31 4.1E-36 253.7 21.6 252 155-458 3-285 (1202)
55 PLN00181 protein SPA1-RELATED; 100.0 6.7E-30 1.5E-34 265.8 33.4 270 142-456 457-741 (793)
56 KOG0306 WD40-repeat-containing 100.0 4.6E-30 1E-34 240.5 28.2 281 117-455 367-666 (888)
57 KOG0282 mRNA splicing factor [ 100.0 1.1E-31 2.3E-36 239.8 16.1 255 151-457 204-466 (503)
58 KOG0268 Sof1-like rRNA process 100.0 1.7E-31 3.7E-36 230.2 16.8 284 113-456 56-348 (433)
59 KOG0313 Microtubule binding pr 100.0 2.9E-30 6.2E-35 224.0 23.9 272 112-396 133-419 (423)
60 KOG0283 WD40 repeat-containing 100.0 1.4E-30 3.1E-35 248.1 23.6 275 156-456 261-579 (712)
61 KOG1407 WD40 repeat protein [F 100.0 2.2E-29 4.8E-34 208.2 27.1 279 117-453 14-311 (313)
62 KOG0772 Uncharacterized conser 100.0 3E-30 6.5E-35 232.1 23.7 296 117-451 161-485 (641)
63 KOG0301 Phospholipase A2-activ 100.0 7.2E-30 1.6E-34 237.4 26.1 278 113-455 4-290 (745)
64 KOG0283 WD40 repeat-containing 100.0 3.5E-30 7.5E-35 245.5 24.6 243 116-395 259-576 (712)
65 cd00200 WD40 WD40 domain, foun 100.0 6.8E-29 1.5E-33 227.9 32.5 249 154-457 2-253 (289)
66 KOG0277 Peroxisomal targeting 100.0 1.8E-30 3.9E-35 213.7 19.3 235 123-394 60-308 (311)
67 KOG1446 Histone H3 (Lys4) meth 100.0 1.8E-28 4E-33 208.6 31.6 281 122-456 13-306 (311)
68 KOG0296 Angio-associated migra 100.0 7.3E-30 1.6E-34 220.5 22.8 261 151-467 54-370 (399)
69 KOG0640 mRNA cleavage stimulat 100.0 4.3E-30 9.3E-35 217.3 20.9 286 117-452 106-425 (430)
70 KOG0973 Histone transcription 100.0 7.4E-30 1.6E-34 249.3 25.4 295 124-456 14-358 (942)
71 KOG0288 WD40 repeat protein Ti 100.0 1E-30 2.3E-35 229.0 16.2 278 117-451 169-459 (459)
72 KOG0294 WD40 repeat-containing 100.0 8E-29 1.7E-33 210.2 26.7 263 136-456 4-284 (362)
73 KOG0278 Serine/threonine kinas 100.0 2.4E-30 5.1E-35 212.5 15.7 247 112-398 48-300 (334)
74 KOG0310 Conserved WD40 repeat- 100.0 1.1E-28 2.5E-33 220.9 27.5 275 123-455 26-311 (487)
75 PTZ00421 coronin; Provisional 100.0 2.4E-28 5.1E-33 235.7 31.3 234 156-423 70-316 (493)
76 KOG0305 Anaphase promoting com 100.0 1E-28 2.2E-33 229.6 26.0 265 133-455 188-463 (484)
77 KOG0639 Transducin-like enhanc 100.0 3.4E-28 7.3E-33 218.2 27.1 276 120-452 416-703 (705)
78 KOG0299 U3 snoRNP-associated p 100.0 6.4E-29 1.4E-33 220.8 22.2 273 154-464 135-421 (479)
79 PTZ00420 coronin; Provisional 100.0 1E-27 2.2E-32 232.2 31.9 252 139-423 50-319 (568)
80 KOG0274 Cdc4 and related F-box 100.0 1.6E-28 3.5E-33 237.0 26.2 245 115-406 240-490 (537)
81 KOG0264 Nucleosome remodeling 100.0 1.4E-28 3.1E-33 218.6 23.2 258 159-454 122-405 (422)
82 KOG0647 mRNA export protein (c 100.0 8.3E-28 1.8E-32 202.9 25.8 254 128-423 34-306 (347)
83 KOG0641 WD40 repeat protein [G 100.0 1.4E-26 3.1E-31 187.6 29.6 288 123-453 32-349 (350)
84 KOG4283 Transcription-coupled 100.0 1.4E-27 3.1E-32 200.7 24.6 290 119-457 39-369 (397)
85 KOG0293 WD40 repeat-containing 100.0 5.8E-28 1.3E-32 211.8 21.1 263 152-464 215-481 (519)
86 KOG0308 Conserved WD40 repeat- 100.0 2.1E-28 4.6E-33 226.0 18.9 271 132-455 36-329 (735)
87 KOG0275 Conserved WD40 repeat- 100.0 1.6E-28 3.6E-33 208.9 16.6 252 159-457 211-471 (508)
88 KOG1407 WD40 repeat protein [F 100.0 3E-27 6.5E-32 195.6 21.9 251 155-460 14-268 (313)
89 PTZ00421 coronin; Provisional 100.0 2E-26 4.4E-31 222.3 31.4 257 161-458 20-295 (493)
90 KOG1332 Vesicle coat complex C 100.0 7.8E-28 1.7E-32 197.1 18.0 250 120-403 8-294 (299)
91 KOG0308 Conserved WD40 repeat- 100.0 4E-28 8.7E-33 224.2 18.0 259 166-467 29-299 (735)
92 KOG0310 Conserved WD40 repeat- 100.0 2.5E-27 5.5E-32 212.3 22.6 241 116-396 61-310 (487)
93 KOG1408 WD40 repeat protein [F 100.0 1.9E-27 4E-32 221.8 22.5 305 128-454 329-714 (1080)
94 KOG0294 WD40 repeat-containing 100.0 1.3E-26 2.9E-31 196.7 25.2 259 118-420 38-307 (362)
95 KOG0299 U3 snoRNP-associated p 100.0 8.6E-27 1.9E-31 207.4 24.7 286 116-454 135-457 (479)
96 PTZ00420 coronin; Provisional 100.0 5.6E-26 1.2E-30 220.2 32.5 202 233-455 72-295 (568)
97 KOG2096 WD40 repeat protein [G 100.0 3.4E-26 7.5E-31 194.4 26.0 299 115-451 78-400 (420)
98 KOG0643 Translation initiation 100.0 2.7E-26 5.9E-31 190.5 23.5 232 156-424 5-245 (327)
99 KOG1332 Vesicle coat complex C 100.0 5.6E-27 1.2E-31 192.2 18.6 253 157-454 7-287 (299)
100 KOG0321 WD40 repeat-containing 100.0 1.3E-26 2.8E-31 213.9 22.8 282 133-458 64-396 (720)
101 KOG0300 WD40 repeat-containing 100.0 1.6E-26 3.5E-31 196.3 20.9 279 135-471 126-446 (481)
102 KOG1036 Mitotic spindle checkp 100.0 3.4E-25 7.4E-30 187.9 28.6 263 124-442 14-293 (323)
103 KOG0647 mRNA export protein (c 100.0 6.5E-26 1.4E-30 191.5 23.0 261 152-466 18-294 (347)
104 KOG1446 Histone H3 (Lys4) meth 99.9 1.1E-24 2.3E-29 185.8 29.7 251 155-461 8-270 (311)
105 KOG0772 Uncharacterized conser 99.9 2.2E-26 4.7E-31 207.4 20.5 264 155-460 161-452 (641)
106 KOG0264 Nucleosome remodeling 99.9 3E-26 6.6E-31 203.9 20.4 251 116-396 117-405 (422)
107 KOG2106 Uncharacterized conser 99.9 1.1E-24 2.3E-29 196.0 30.3 305 124-452 247-625 (626)
108 KOG0650 WD40 repeat nucleolar 99.9 2.4E-25 5.1E-30 204.1 25.2 308 116-451 393-733 (733)
109 KOG2445 Nuclear pore complex c 99.9 9.6E-25 2.1E-29 184.9 26.9 254 158-453 10-318 (361)
110 KOG0289 mRNA splicing factor [ 99.9 2.1E-25 4.5E-30 197.1 23.6 249 111-394 249-505 (506)
111 KOG1063 RNA polymerase II elon 99.9 2E-25 4.4E-30 207.9 24.4 328 114-455 182-650 (764)
112 KOG0646 WD40 repeat protein [G 99.9 1.6E-25 3.4E-30 199.7 22.2 273 138-456 12-310 (476)
113 KOG0305 Anaphase promoting com 99.9 2.6E-25 5.7E-30 207.0 24.6 241 115-396 208-462 (484)
114 KOG0269 WD40 repeat-containing 99.9 3.7E-26 7.9E-31 215.3 18.7 280 128-456 46-343 (839)
115 KOG1539 WD repeat protein [Gen 99.9 1.3E-24 2.8E-29 206.5 29.2 301 112-456 191-609 (910)
116 KOG0301 Phospholipase A2-activ 99.9 8.6E-26 1.9E-30 210.4 20.5 242 152-453 5-249 (745)
117 KOG0288 WD40 repeat protein Ti 99.9 3.1E-26 6.7E-31 201.1 16.5 243 113-393 209-459 (459)
118 KOG0973 Histone transcription 99.9 1.4E-25 3.1E-30 219.5 22.6 271 160-460 12-319 (942)
119 KOG0646 WD40 repeat protein [G 99.9 2.3E-25 5E-30 198.7 21.3 249 133-423 50-332 (476)
120 KOG2445 Nuclear pore complex c 99.9 7.5E-25 1.6E-29 185.6 23.1 273 121-420 11-342 (361)
121 KOG0640 mRNA cleavage stimulat 99.9 1.1E-25 2.3E-30 190.8 16.5 266 156-456 107-386 (430)
122 KOG0270 WD40 repeat-containing 99.9 1.1E-24 2.4E-29 193.2 20.6 306 128-465 132-461 (463)
123 KOG1036 Mitotic spindle checkp 99.9 6.8E-24 1.5E-28 180.0 23.7 244 160-460 12-269 (323)
124 KOG0268 Sof1-like rRNA process 99.9 7.2E-25 1.6E-29 189.5 16.2 242 114-396 100-346 (433)
125 KOG0269 WD40 repeat-containing 99.9 4.3E-25 9.2E-30 208.2 15.7 229 131-396 98-341 (839)
126 KOG1274 WD40 repeat protein [G 99.9 3.4E-23 7.4E-28 199.1 28.9 255 128-423 20-283 (933)
127 KOG2055 WD40 repeat protein [G 99.9 1.6E-23 3.4E-28 186.7 24.0 280 123-453 213-512 (514)
128 KOG0641 WD40 repeat protein [G 99.9 9.7E-23 2.1E-27 165.5 26.3 256 160-455 31-305 (350)
129 KOG1273 WD40 repeat protein [G 99.9 4.9E-23 1.1E-27 175.1 25.6 273 126-455 28-324 (405)
130 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.7E-22 5.8E-27 186.2 33.0 266 133-457 1-283 (300)
131 KOG0267 Microtubule severing p 99.9 1.9E-25 4.2E-30 209.0 11.6 244 134-423 5-251 (825)
132 KOG1408 WD40 repeat protein [F 99.9 5.2E-23 1.1E-27 192.4 27.0 294 127-468 264-686 (1080)
133 KOG2106 Uncharacterized conser 99.9 6.7E-22 1.4E-26 178.2 30.9 291 121-460 152-484 (626)
134 KOG0302 Ribosome Assembly prot 99.9 5E-23 1.1E-27 179.1 21.1 262 118-451 146-436 (440)
135 KOG0639 Transducin-like enhanc 99.9 1.3E-23 2.9E-28 188.9 17.4 253 158-463 416-673 (705)
136 KOG1063 RNA polymerase II elon 99.9 1.3E-22 2.9E-27 189.2 23.6 301 135-459 161-608 (764)
137 KOG2048 WD40 repeat protein [G 99.9 1.6E-21 3.5E-26 181.8 30.4 282 123-454 25-320 (691)
138 KOG2048 WD40 repeat protein [G 99.9 7.6E-22 1.6E-26 184.0 28.2 247 160-457 24-279 (691)
139 KOG4328 WD40 protein [Function 99.9 2E-22 4.4E-27 179.5 23.1 289 116-453 179-495 (498)
140 KOG0302 Ribosome Assembly prot 99.9 3.6E-23 7.7E-28 180.0 17.8 210 232-456 148-381 (440)
141 KOG4283 Transcription-coupled 99.9 1.7E-22 3.6E-27 170.4 20.9 241 157-463 39-286 (397)
142 KOG1539 WD repeat protein [Gen 99.9 1.4E-21 3.1E-26 186.0 28.7 315 115-454 236-649 (910)
143 KOG4378 Nuclear protein COP1 [ 99.9 1E-22 2.2E-27 183.0 18.6 256 126-422 37-305 (673)
144 KOG1274 WD40 repeat protein [G 99.9 7.5E-22 1.6E-26 190.0 25.8 242 158-454 10-263 (933)
145 KOG0270 WD40 repeat-containing 99.9 1.3E-22 2.8E-27 180.2 18.9 225 133-396 192-450 (463)
146 KOG1445 Tumor-specific antigen 99.9 2.2E-22 4.8E-27 185.9 21.0 121 325-461 628-758 (1012)
147 KOG1188 WD40 repeat protein [G 99.9 3.6E-22 7.7E-27 171.8 20.7 274 134-453 41-346 (376)
148 KOG0267 Microtubule severing p 99.9 3E-24 6.6E-29 201.0 8.2 199 234-455 27-228 (825)
149 KOG2919 Guanine nucleotide-bin 99.9 1.2E-21 2.5E-26 167.4 21.2 265 128-444 56-361 (406)
150 KOG1009 Chromatin assembly com 99.9 3.2E-21 7E-26 169.5 24.3 302 124-457 14-376 (434)
151 KOG1034 Transcriptional repres 99.9 2.7E-21 6E-26 165.5 21.6 284 120-452 35-382 (385)
152 KOG0307 Vesicle coat complex C 99.9 2E-22 4.4E-27 198.5 15.6 270 140-456 36-330 (1049)
153 KOG1007 WD repeat protein TSSC 99.9 3.9E-21 8.5E-26 161.7 20.8 277 116-454 56-362 (370)
154 KOG4227 WD40 repeat protein [G 99.9 6.5E-21 1.4E-25 166.8 22.5 295 116-454 49-388 (609)
155 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-19 3.4E-24 167.6 31.5 255 127-420 36-300 (300)
156 KOG0322 G-protein beta subunit 99.9 2.6E-21 5.5E-26 160.8 15.4 283 118-452 9-322 (323)
157 KOG2096 WD40 repeat protein [G 99.9 8.6E-21 1.9E-25 161.8 18.7 210 231-454 82-309 (420)
158 KOG1538 Uncharacterized conser 99.9 1.3E-20 2.8E-25 175.3 20.9 269 127-454 18-294 (1081)
159 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-20 2.3E-25 170.1 19.5 267 143-462 12-289 (673)
160 KOG0321 WD40 repeat-containing 99.9 1.8E-20 3.9E-25 173.6 20.6 254 167-460 55-354 (720)
161 KOG0307 Vesicle coat complex C 99.9 9.5E-22 2.1E-26 193.8 12.6 227 135-397 82-329 (1049)
162 KOG1273 WD40 repeat protein [G 99.9 4E-20 8.6E-25 157.6 19.4 244 164-456 26-283 (405)
163 KOG0649 WD40 repeat protein [G 99.9 5.5E-19 1.2E-23 145.4 25.3 278 128-451 17-314 (325)
164 KOG1334 WD40 repeat protein [G 99.9 4E-21 8.7E-26 172.6 14.0 298 114-457 133-470 (559)
165 KOG0650 WD40 repeat nucleolar 99.9 6.8E-20 1.5E-24 168.6 20.7 241 155-452 394-679 (733)
166 KOG0290 Conserved WD40 repeat- 99.8 1.5E-18 3.3E-23 146.4 24.1 269 126-423 47-348 (364)
167 KOG1240 Protein kinase contain 99.8 4.8E-19 1E-23 175.5 24.3 298 113-451 1038-1431(1431)
168 KOG1517 Guanine nucleotide bin 99.8 1.2E-18 2.6E-23 170.2 24.5 293 126-456 1069-1384(1387)
169 PRK11028 6-phosphogluconolacto 99.8 1.9E-17 4.1E-22 155.5 31.9 272 137-455 6-306 (330)
170 KOG4328 WD40 protein [Function 99.8 2.4E-19 5.2E-24 160.1 17.6 203 234-453 185-399 (498)
171 KOG1034 Transcriptional repres 99.8 6.3E-19 1.4E-23 151.2 19.4 258 157-458 34-342 (385)
172 KOG2055 WD40 repeat protein [G 99.8 6.7E-19 1.5E-23 157.4 19.9 244 161-454 213-468 (514)
173 KOG0303 Actin-binding protein 99.8 4.2E-19 9.1E-24 155.7 17.7 206 116-358 74-298 (472)
174 COG2319 FOG: WD40 repeat [Gene 99.8 1E-16 2.2E-21 155.9 36.6 287 118-456 60-362 (466)
175 KOG1963 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 161.2 27.6 282 126-455 210-540 (792)
176 KOG1523 Actin-related protein 99.8 1.3E-17 2.8E-22 142.7 23.8 205 123-357 10-239 (361)
177 KOG1310 WD40 repeat protein [G 99.8 1.6E-18 3.5E-23 158.1 19.3 218 114-353 41-302 (758)
178 KOG0642 Cell-cycle nuclear pro 99.8 3.8E-19 8.3E-24 162.9 14.9 263 118-410 289-573 (577)
179 KOG0642 Cell-cycle nuclear pro 99.8 2.8E-19 6.1E-24 163.7 13.4 263 156-464 289-572 (577)
180 KOG2919 Guanine nucleotide-bin 99.8 7.8E-18 1.7E-22 144.2 21.2 257 163-454 51-328 (406)
181 KOG0303 Actin-binding protein 99.8 1.9E-17 4.2E-22 145.4 22.6 214 152-397 72-296 (472)
182 KOG0290 Conserved WD40 repeat- 99.8 1.2E-17 2.7E-22 141.0 19.8 206 233-457 94-322 (364)
183 KOG1587 Cytoplasmic dynein int 99.8 3E-17 6.6E-22 157.8 25.1 274 142-455 221-518 (555)
184 COG2319 FOG: WD40 repeat [Gene 99.8 3.1E-16 6.7E-21 152.5 32.9 250 155-456 59-317 (466)
185 KOG1007 WD repeat protein TSSC 99.8 7.9E-18 1.7E-22 142.0 17.1 208 233-455 61-291 (370)
186 KOG0644 Uncharacterized conser 99.8 1.9E-19 4.1E-24 171.6 8.0 252 152-462 181-435 (1113)
187 KOG0644 Uncharacterized conser 99.8 9E-19 1.9E-23 167.1 11.0 279 114-458 181-473 (1113)
188 KOG1445 Tumor-specific antigen 99.8 1.1E-17 2.5E-22 155.1 17.5 245 172-462 590-853 (1012)
189 KOG4227 WD40 repeat protein [G 99.8 2.3E-17 4.9E-22 144.8 17.8 257 155-456 50-325 (609)
190 KOG1538 Uncharacterized conser 99.8 1.3E-17 2.8E-22 155.6 16.7 238 113-395 43-293 (1081)
191 PRK01742 tolB translocation pr 99.8 9.3E-17 2E-21 155.5 22.1 235 142-421 183-426 (429)
192 KOG1310 WD40 repeat protein [G 99.8 2.1E-17 4.5E-22 151.0 16.0 253 153-463 42-313 (758)
193 KOG1188 WD40 repeat protein [G 99.7 8.1E-17 1.8E-21 139.1 16.8 197 248-460 41-249 (376)
194 KOG1009 Chromatin assembly com 99.7 2.3E-16 4.9E-21 139.3 18.8 265 161-458 13-334 (434)
195 KOG0649 WD40 repeat protein [G 99.7 9.2E-16 2E-20 126.6 21.1 242 162-454 11-275 (325)
196 KOG1587 Cytoplasmic dynein int 99.7 3.4E-16 7.3E-21 150.7 21.4 208 234-456 241-475 (555)
197 KOG0771 Prolactin regulatory e 99.7 1.1E-16 2.3E-21 142.3 15.4 194 125-354 148-354 (398)
198 KOG1517 Guanine nucleotide bin 99.7 6.5E-16 1.4E-20 151.4 21.8 246 162-456 1065-1336(1387)
199 KOG2110 Uncharacterized conser 99.7 5.7E-14 1.2E-18 123.0 31.5 226 126-396 8-249 (391)
200 KOG1272 WD40-repeat-containing 99.7 3.3E-17 7.1E-22 146.9 10.3 281 127-463 135-419 (545)
201 KOG2321 WD40 repeat protein [G 99.7 3E-15 6.6E-20 137.8 23.2 282 159-458 49-348 (703)
202 KOG1523 Actin-related protein 99.7 4.4E-15 9.6E-20 127.4 20.9 231 160-423 9-262 (361)
203 PRK11028 6-phosphogluconolacto 99.7 3.5E-14 7.5E-19 133.4 29.0 240 126-396 39-305 (330)
204 KOG2394 WD40 protein DMR-N9 [G 99.7 2.2E-14 4.7E-19 131.2 25.9 277 125-456 125-455 (636)
205 KOG0771 Prolactin regulatory e 99.7 8.1E-16 1.8E-20 136.8 15.9 196 239-456 148-357 (398)
206 KOG1240 Protein kinase contain 99.7 1.1E-14 2.3E-19 145.2 24.7 279 148-458 1034-1339(1431)
207 KOG1524 WD40 repeat-containing 99.7 8.8E-16 1.9E-20 140.1 15.8 204 133-391 75-282 (737)
208 KOG1524 WD40 repeat-containing 99.7 4.4E-15 9.4E-20 135.6 20.0 259 121-449 12-282 (737)
209 KOG1963 WD40 repeat protein [G 99.7 1.5E-13 3.2E-18 133.1 29.2 311 128-458 23-380 (792)
210 KOG1409 Uncharacterized conser 99.7 1.5E-14 3.3E-19 125.3 18.8 249 114-396 15-271 (404)
211 PRK03629 tolB translocation pr 99.6 7.7E-14 1.7E-18 134.9 25.5 234 144-421 180-428 (429)
212 KOG1354 Serine/threonine prote 99.6 9E-14 2E-18 120.6 21.5 272 123-396 25-360 (433)
213 KOG1334 WD40 repeat protein [G 99.6 8.1E-15 1.8E-19 132.5 15.6 256 154-456 135-427 (559)
214 KOG1272 WD40-repeat-containing 99.6 1.9E-15 4.2E-20 135.7 10.9 230 161-452 129-361 (545)
215 KOG2110 Uncharacterized conser 99.6 6.4E-13 1.4E-17 116.5 25.7 238 161-456 5-251 (391)
216 PRK01742 tolB translocation pr 99.6 7.5E-14 1.6E-18 135.3 20.9 192 234-453 202-401 (429)
217 KOG2111 Uncharacterized conser 99.6 4.5E-12 9.7E-17 109.2 28.4 228 128-396 10-257 (346)
218 KOG2111 Uncharacterized conser 99.6 1.6E-12 3.6E-17 111.8 25.3 243 163-460 7-263 (346)
219 PRK04922 tolB translocation pr 99.6 3.6E-13 7.7E-18 130.8 24.2 232 143-420 184-432 (433)
220 KOG3881 Uncharacterized conser 99.6 2.9E-13 6.2E-18 119.5 20.3 249 135-423 71-344 (412)
221 PRK02889 tolB translocation pr 99.6 5.1E-13 1.1E-17 129.3 24.1 246 132-421 163-425 (427)
222 KOG2139 WD40 repeat protein [G 99.6 2.4E-12 5.2E-17 112.6 24.7 291 126-454 101-432 (445)
223 PF02239 Cytochrom_D1: Cytochr 99.6 3.4E-12 7.3E-17 119.8 27.5 269 133-456 5-305 (369)
224 KOG3881 Uncharacterized conser 99.6 3.6E-13 7.8E-18 118.8 18.7 213 118-359 100-325 (412)
225 KOG0322 G-protein beta subunit 99.6 2.8E-14 6E-19 119.4 10.7 156 122-305 149-322 (323)
226 KOG2394 WD40 protein DMR-N9 [G 99.6 2.4E-13 5.2E-18 124.5 17.4 192 133-334 185-384 (636)
227 KOG2139 WD40 repeat protein [G 99.6 2.8E-12 6.1E-17 112.2 23.0 237 123-395 140-431 (445)
228 PRK05137 tolB translocation pr 99.5 2.7E-12 5.8E-17 124.9 25.7 231 144-421 183-433 (435)
229 KOG0974 WD-repeat protein WDR6 99.5 8.1E-13 1.8E-17 130.3 21.6 196 237-455 89-290 (967)
230 KOG4497 Uncharacterized conser 99.5 2.8E-12 6E-17 110.8 20.8 272 125-454 12-392 (447)
231 KOG4497 Uncharacterized conser 99.5 2.1E-11 4.7E-16 105.4 23.7 320 101-447 15-426 (447)
232 KOG2321 WD40 repeat protein [G 99.5 4.7E-12 1E-16 117.1 20.9 262 127-396 57-344 (703)
233 KOG1064 RAVE (regulator of V-A 99.5 3.5E-13 7.7E-18 139.0 13.7 193 157-396 2204-2399(2439)
234 PRK03629 tolB translocation pr 99.5 5.5E-11 1.2E-15 115.1 27.2 196 234-455 197-408 (429)
235 PRK02889 tolB translocation pr 99.5 2.6E-11 5.6E-16 117.5 24.1 179 234-423 194-383 (427)
236 PF02239 Cytochrom_D1: Cytochr 99.5 7.2E-11 1.6E-15 110.9 26.0 299 114-457 27-351 (369)
237 KOG0280 Uncharacterized conser 99.5 9.5E-11 2.1E-15 100.0 23.9 271 142-457 45-337 (339)
238 PRK05137 tolB translocation pr 99.4 6.2E-11 1.3E-15 115.4 26.1 176 234-423 200-389 (435)
239 TIGR02800 propeller_TolB tol-p 99.4 4.3E-11 9.3E-16 116.5 23.9 229 144-418 171-416 (417)
240 PF10282 Lactonase: Lactonase, 99.4 6.8E-10 1.5E-14 104.5 30.3 277 136-455 2-324 (345)
241 KOG1354 Serine/threonine prote 99.4 2.7E-11 5.8E-16 105.4 18.7 260 161-458 25-364 (433)
242 PRK04922 tolB translocation pr 99.4 7.3E-11 1.6E-15 114.7 24.3 195 234-454 202-412 (433)
243 KOG2041 WD40 repeat protein [G 99.4 4.4E-11 9.6E-16 113.5 21.4 264 124-423 15-321 (1189)
244 PRK00178 tolB translocation pr 99.4 1.3E-10 2.8E-15 113.3 25.2 232 144-421 180-428 (430)
245 PF08662 eIF2A: Eukaryotic tra 99.4 3.9E-11 8.5E-16 102.3 18.4 147 240-396 10-180 (194)
246 KOG0974 WD-repeat protein WDR6 99.4 5.5E-11 1.2E-15 117.6 21.4 143 131-307 143-289 (967)
247 PF08662 eIF2A: Eukaryotic tra 99.4 3.7E-11 8.1E-16 102.5 17.3 113 323-455 58-181 (194)
248 KOG1409 Uncharacterized conser 99.4 6E-11 1.3E-15 103.3 18.5 248 154-456 17-273 (404)
249 PRK04792 tolB translocation pr 99.4 1.9E-10 4.2E-15 111.8 24.2 232 144-421 199-447 (448)
250 TIGR02658 TTQ_MADH_Hv methylam 99.4 5.8E-09 1.3E-13 95.9 31.5 269 143-457 27-334 (352)
251 COG5170 CDC55 Serine/threonine 99.4 1.3E-10 2.9E-15 99.9 18.7 272 123-396 26-368 (460)
252 KOG2315 Predicted translation 99.3 2.1E-09 4.4E-14 99.9 26.7 303 125-455 38-392 (566)
253 KOG0309 Conserved WD40 repeat- 99.3 1.7E-11 3.6E-16 116.7 12.8 253 161-454 24-340 (1081)
254 COG5354 Uncharacterized protei 99.3 2.7E-09 5.9E-14 97.9 25.6 301 128-455 39-397 (561)
255 COG2706 3-carboxymuconate cycl 99.3 4.4E-08 9.5E-13 86.8 31.2 273 142-460 15-328 (346)
256 PRK01029 tolB translocation pr 99.3 3.3E-09 7.1E-14 102.4 26.2 238 144-421 166-425 (428)
257 TIGR02800 propeller_TolB tol-p 99.3 1.6E-09 3.4E-14 105.5 23.9 177 234-423 188-377 (417)
258 KOG4547 WD40 repeat-containing 99.3 1.2E-09 2.6E-14 102.0 21.4 186 132-355 4-221 (541)
259 PF10282 Lactonase: Lactonase, 99.3 2.9E-08 6.2E-13 93.5 30.9 251 126-395 41-322 (345)
260 KOG4547 WD40 repeat-containing 99.2 3E-09 6.4E-14 99.5 22.9 204 171-396 3-221 (541)
261 PRK00178 tolB translocation pr 99.2 7.3E-09 1.6E-13 101.1 26.5 196 234-454 197-407 (430)
262 KOG0280 Uncharacterized conser 99.2 1.8E-09 3.9E-14 92.3 17.3 206 234-458 68-289 (339)
263 PF04762 IKI3: IKI3 family; I 99.2 5.8E-08 1.3E-12 101.4 32.1 313 123-455 75-458 (928)
264 TIGR03300 assembly_YfgL outer 99.2 5.1E-08 1.1E-12 93.5 28.9 290 131-450 63-376 (377)
265 PRK04792 tolB translocation pr 99.2 1.2E-08 2.6E-13 99.4 24.1 195 234-453 216-425 (448)
266 KOG4714 Nucleoporin [Nuclear s 99.2 4.4E-10 9.5E-15 94.4 11.8 232 126-393 39-316 (319)
267 KOG1064 RAVE (regulator of V-A 99.1 4.7E-10 1E-14 116.7 13.5 195 227-456 2200-2401(2439)
268 COG4946 Uncharacterized protei 99.1 8.2E-08 1.8E-12 87.6 26.1 171 132-343 331-507 (668)
269 PF15492 Nbas_N: Neuroblastoma 99.1 4.9E-07 1.1E-11 77.9 27.9 193 237-457 45-263 (282)
270 KOG2314 Translation initiation 99.1 2.2E-07 4.8E-12 86.5 26.8 306 123-454 212-574 (698)
271 KOG2041 WD40 repeat protein [G 99.1 2.6E-09 5.6E-14 101.8 14.5 244 160-444 13-279 (1189)
272 KOG4190 Uncharacterized conser 99.1 4.1E-10 9E-15 104.1 8.6 214 154-396 728-949 (1034)
273 KOG4190 Uncharacterized conser 99.1 7.3E-10 1.6E-14 102.5 10.1 283 116-449 728-1032(1034)
274 KOG2315 Predicted translation 99.1 4.6E-08 9.9E-13 91.1 21.7 236 142-422 145-412 (566)
275 KOG1912 WD40 repeat protein [G 99.1 5.8E-08 1.3E-12 93.7 22.5 307 114-423 46-480 (1062)
276 PLN02919 haloacid dehalogenase 99.1 5.4E-07 1.2E-11 96.1 32.2 259 165-457 571-892 (1057)
277 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.2E-06 2.6E-11 80.8 28.9 242 129-406 53-338 (352)
278 PLN02919 haloacid dehalogenase 99.0 8.6E-07 1.9E-11 94.6 30.9 253 128-397 574-890 (1057)
279 PRK01029 tolB translocation pr 99.0 3.4E-07 7.3E-12 88.5 25.1 201 236-456 185-406 (428)
280 PF04762 IKI3: IKI3 family; I 99.0 3.7E-07 8.1E-12 95.5 26.6 242 160-455 74-335 (928)
281 KOG0882 Cyclophilin-related pe 99.0 3.4E-08 7.3E-13 89.5 15.7 247 121-396 7-306 (558)
282 KOG4532 WD40-like repeat conta 99.0 1.6E-07 3.6E-12 79.6 18.6 192 133-359 84-287 (344)
283 KOG0309 Conserved WD40 repeat- 98.9 6.3E-09 1.4E-13 99.6 10.8 224 136-396 85-340 (1081)
284 COG5170 CDC55 Serine/threonine 98.9 9.2E-09 2E-13 88.8 10.8 243 160-462 25-318 (460)
285 KOG3914 WD repeat protein WDR4 98.9 3.8E-08 8.2E-13 88.1 14.4 152 238-397 65-225 (390)
286 KOG4714 Nucleoporin [Nuclear s 98.9 3.1E-08 6.6E-13 83.5 12.8 156 234-396 88-255 (319)
287 PF13360 PQQ_2: PQQ-like domai 98.9 9E-07 2E-11 78.9 21.8 224 182-459 2-236 (238)
288 COG2706 3-carboxymuconate cycl 98.9 3.2E-06 7E-11 75.2 24.0 199 126-355 93-322 (346)
289 KOG3914 WD repeat protein WDR4 98.8 5.1E-08 1.1E-12 87.3 12.6 159 164-359 65-228 (390)
290 PF08450 SGL: SMP-30/Gluconola 98.8 9.7E-06 2.1E-10 72.6 27.2 210 165-423 3-238 (246)
291 KOG2314 Translation initiation 98.8 1.1E-06 2.5E-11 81.9 21.0 234 164-454 213-526 (698)
292 KOG1912 WD40 repeat protein [G 98.8 3.8E-07 8.2E-12 88.3 18.5 231 133-396 26-305 (1062)
293 KOG4532 WD40-like repeat conta 98.8 4.1E-07 8.9E-12 77.2 16.5 189 135-354 130-331 (344)
294 COG5354 Uncharacterized protei 98.8 2.8E-06 6E-11 78.7 23.0 244 157-455 28-308 (561)
295 PF15492 Nbas_N: Neuroblastoma 98.8 5.6E-06 1.2E-10 71.5 23.4 225 128-396 4-260 (282)
296 PRK11138 outer membrane biogen 98.8 4.1E-06 8.8E-11 80.7 25.7 261 132-452 119-393 (394)
297 COG4946 Uncharacterized protei 98.8 5.7E-06 1.2E-10 76.0 24.3 211 140-358 243-481 (668)
298 TIGR03300 assembly_YfgL outer 98.8 2.8E-06 6.1E-11 81.5 24.0 231 173-461 65-305 (377)
299 KOG2695 WD40 repeat protein [G 98.8 2.4E-08 5.3E-13 87.4 8.5 147 133-308 225-378 (425)
300 PRK04043 tolB translocation pr 98.8 7E-06 1.5E-10 79.0 26.2 190 163-396 189-401 (419)
301 KOG2114 Vacuolar assembly/sort 98.7 2.6E-06 5.6E-11 83.7 21.9 223 125-373 27-262 (933)
302 KOG2695 WD40 repeat protein [G 98.7 3.9E-08 8.5E-13 86.2 8.3 150 289-457 225-380 (425)
303 PF00400 WD40: WD domain, G-be 98.7 5.2E-08 1.1E-12 59.2 6.4 38 401-451 2-39 (39)
304 PF08450 SGL: SMP-30/Gluconola 98.7 4.2E-05 9E-10 68.5 27.6 210 132-375 11-232 (246)
305 PRK11138 outer membrane biogen 98.7 1E-05 2.3E-10 77.9 24.7 232 173-460 120-360 (394)
306 KOG1920 IkappaB kinase complex 98.7 3.4E-06 7.4E-11 86.0 21.6 240 162-455 69-324 (1265)
307 PRK04043 tolB translocation pr 98.7 1.8E-05 3.9E-10 76.2 25.9 173 237-424 189-381 (419)
308 KOG2066 Vacuolar assembly/sort 98.7 1.1E-06 2.4E-11 85.7 16.9 188 123-354 39-233 (846)
309 KOG2066 Vacuolar assembly/sort 98.7 1.3E-06 2.9E-11 85.1 17.2 184 161-396 39-234 (846)
310 PF00400 WD40: WD domain, G-be 98.7 5.8E-08 1.3E-12 59.0 5.3 37 153-189 3-39 (39)
311 PF13360 PQQ_2: PQQ-like domai 98.6 3.4E-05 7.3E-10 68.7 23.9 183 172-397 35-232 (238)
312 KOG3621 WD40 repeat-containing 98.6 1.9E-05 4E-10 76.3 22.6 142 126-293 38-186 (726)
313 KOG1275 PAB-dependent poly(A) 98.6 3.4E-06 7.4E-11 83.4 17.1 194 246-462 146-350 (1118)
314 KOG1645 RING-finger-containing 98.6 5.8E-06 1.3E-10 74.4 17.1 256 145-454 175-462 (463)
315 KOG0882 Cyclophilin-related pe 98.5 1.4E-06 3E-11 79.4 12.5 224 160-460 8-238 (558)
316 PF06433 Me-amine-dh_H: Methyl 98.5 0.00015 3.2E-09 65.6 25.1 269 144-457 18-324 (342)
317 KOG1275 PAB-dependent poly(A) 98.5 3.8E-06 8.2E-11 83.1 14.3 183 132-353 146-341 (1118)
318 KOG2114 Vacuolar assembly/sort 98.5 2.9E-05 6.2E-10 76.7 20.0 204 237-460 27-250 (933)
319 KOG1832 HIV-1 Vpr-binding prot 98.5 2E-07 4.3E-12 91.4 5.3 197 151-396 1091-1292(1516)
320 KOG1920 IkappaB kinase complex 98.4 6.8E-05 1.5E-09 76.9 23.0 228 123-355 68-323 (1265)
321 PF08596 Lgl_C: Lethal giant l 98.4 0.00038 8.2E-09 66.1 25.3 256 163-423 3-319 (395)
322 KOG3621 WD40 repeat-containing 98.3 1.3E-05 2.8E-10 77.4 14.1 162 234-396 32-198 (726)
323 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0016 3.6E-08 55.7 26.9 138 133-304 23-163 (354)
324 PF07433 DUF1513: Protein of u 98.3 0.0014 3E-08 58.8 24.4 188 167-390 56-280 (305)
325 PF11768 DUF3312: Protein of u 98.2 0.0036 7.8E-08 60.1 27.3 113 234-355 204-330 (545)
326 KOG3617 WD40 and TPR repeat-co 98.2 7.7E-05 1.7E-09 73.6 16.6 107 126-265 20-131 (1416)
327 PF07433 DUF1513: Protein of u 98.2 0.0046 1E-07 55.5 25.6 220 164-422 7-269 (305)
328 PF08596 Lgl_C: Lethal giant l 98.1 0.00046 1E-08 65.5 20.3 206 237-458 3-295 (395)
329 PF03178 CPSF_A: CPSF A subuni 98.1 0.00054 1.2E-08 64.0 20.8 182 257-455 2-204 (321)
330 KOG1008 Uncharacterized conser 98.1 2.3E-06 5E-11 81.4 4.7 198 161-396 56-276 (783)
331 KOG1645 RING-finger-containing 98.1 3.5E-05 7.5E-10 69.5 10.7 155 259-423 175-343 (463)
332 KOG1832 HIV-1 Vpr-binding prot 98.1 3E-06 6.4E-11 83.5 4.3 172 234-423 1100-1279(1516)
333 PF08553 VID27: VID27 cytoplas 98.1 0.00062 1.3E-08 69.2 20.8 136 255-394 502-646 (794)
334 PF00780 CNH: CNH domain; Int 98.1 0.0081 1.8E-07 54.8 26.5 245 129-408 3-265 (275)
335 KOG1008 Uncharacterized conser 98.1 2.3E-06 4.9E-11 81.5 2.7 206 234-455 55-277 (783)
336 cd00216 PQQ_DH Dehydrogenases 98.0 0.0096 2.1E-07 59.0 27.4 273 133-461 61-432 (488)
337 PF04841 Vps16_N: Vps16, N-ter 98.0 0.011 2.4E-07 57.0 26.4 49 144-193 62-111 (410)
338 PF06977 SdiA-regulated: SdiA- 98.0 0.0059 1.3E-07 53.9 22.1 201 234-450 20-247 (248)
339 KOG3617 WD40 and TPR repeat-co 97.9 0.00031 6.8E-09 69.5 14.8 108 165-306 19-131 (1416)
340 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0012 2.6E-08 49.3 14.5 101 238-350 2-110 (111)
341 PF04053 Coatomer_WDAD: Coatom 97.9 0.0026 5.7E-08 61.3 20.1 219 127-395 38-262 (443)
342 PF11768 DUF3312: Protein of u 97.8 0.032 7E-07 53.8 29.8 107 315-422 250-369 (545)
343 PF00780 CNH: CNH domain; Int 97.8 0.021 4.6E-07 52.0 24.7 225 171-457 5-259 (275)
344 KOG2444 WD40 repeat protein [G 97.8 4.3E-05 9.3E-10 64.1 6.1 142 290-455 32-179 (238)
345 PRK02888 nitrous-oxide reducta 97.8 0.0034 7.3E-08 61.8 18.7 152 237-396 236-405 (635)
346 cd00216 PQQ_DH Dehydrogenases 97.7 0.022 4.8E-07 56.5 24.4 238 134-397 111-426 (488)
347 PF04053 Coatomer_WDAD: Coatom 97.7 0.0093 2E-07 57.6 20.1 223 160-454 31-263 (443)
348 COG3386 Gluconolactonase [Carb 97.6 0.031 6.7E-07 51.2 21.9 210 135-376 39-263 (307)
349 PF04841 Vps16_N: Vps16, N-ter 97.6 0.073 1.6E-06 51.4 25.6 180 236-423 81-272 (410)
350 PF03178 CPSF_A: CPSF A subuni 97.6 0.059 1.3E-06 50.3 25.8 188 247-450 42-262 (321)
351 PF06977 SdiA-regulated: SdiA- 97.6 0.03 6.5E-07 49.5 21.0 203 157-392 17-247 (248)
352 COG3391 Uncharacterized conser 97.6 0.046 9.9E-07 52.3 24.1 223 164-422 76-310 (381)
353 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.045 9.8E-07 51.9 23.7 52 142-194 22-74 (353)
354 KOG2395 Protein involved in va 97.6 0.0017 3.8E-08 61.2 13.4 139 249-395 348-500 (644)
355 PF02897 Peptidase_S9_N: Proly 97.6 0.088 1.9E-06 51.2 29.5 247 162-457 124-408 (414)
356 PRK02888 nitrous-oxide reducta 97.5 0.011 2.4E-07 58.3 18.8 180 242-454 199-405 (635)
357 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.016 3.5E-07 43.4 15.1 99 164-301 2-109 (111)
358 smart00320 WD40 WD40 repeats. 97.5 0.00028 6.1E-09 41.6 5.1 38 401-451 3-40 (40)
359 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.058 1.3E-06 46.6 23.5 100 173-307 23-124 (354)
360 COG3386 Gluconolactonase [Carb 97.4 0.096 2.1E-06 48.0 24.8 209 168-421 31-265 (307)
361 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.027 5.9E-07 53.4 19.4 238 170-455 1-315 (353)
362 smart00320 WD40 WD40 repeats. 97.4 0.00028 6.1E-09 41.6 4.1 35 155-189 6-40 (40)
363 KOG4640 Anaphase-promoting com 97.4 0.00097 2.1E-08 64.1 9.2 94 235-334 20-115 (665)
364 KOG4640 Anaphase-promoting com 97.4 0.00092 2E-08 64.3 8.8 94 161-287 20-115 (665)
365 PF06433 Me-amine-dh_H: Methyl 97.3 0.12 2.6E-06 47.3 22.1 254 115-407 29-329 (342)
366 PF08553 VID27: VID27 cytoplas 97.3 0.0079 1.7E-07 61.5 15.3 99 248-353 543-646 (794)
367 PHA02713 hypothetical protein; 97.3 0.049 1.1E-06 54.9 20.5 188 246-455 303-535 (557)
368 KOG2079 Vacuolar assembly/sort 97.3 0.0029 6.2E-08 64.8 11.5 79 122-200 88-169 (1206)
369 PRK13616 lipoprotein LpqB; Pro 97.3 0.039 8.5E-07 55.5 19.4 192 128-350 356-564 (591)
370 COG0823 TolB Periplasmic compo 97.2 0.022 4.7E-07 54.9 16.9 158 160-356 191-360 (425)
371 PRK13616 lipoprotein LpqB; Pro 97.2 0.056 1.2E-06 54.5 20.0 190 159-390 347-563 (591)
372 PF05694 SBP56: 56kDa selenium 97.1 0.21 4.6E-06 47.1 21.2 197 133-358 87-346 (461)
373 PF14583 Pectate_lyase22: Olig 97.1 0.25 5.4E-06 46.1 25.2 299 128-454 42-382 (386)
374 PF02897 Peptidase_S9_N: Proly 97.1 0.32 6.9E-06 47.3 25.7 199 238-453 126-357 (414)
375 KOG4441 Proteins containing BT 96.9 0.14 3.1E-06 51.5 20.0 186 246-454 332-547 (571)
376 COG0823 TolB Periplasmic compo 96.9 0.073 1.6E-06 51.3 16.9 156 236-397 193-360 (425)
377 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.9 0.61 1.3E-05 46.7 29.4 25 437-461 474-498 (527)
378 KOG2395 Protein involved in va 96.8 0.026 5.6E-07 53.7 12.7 143 171-353 343-499 (644)
379 KOG2444 WD40 repeat protein [G 96.8 0.0048 1E-07 52.1 6.7 137 136-306 33-177 (238)
380 PF14870 PSII_BNR: Photosynthe 96.7 0.44 9.5E-06 43.6 24.7 157 234-392 143-301 (302)
381 PHA02713 hypothetical protein; 96.7 0.061 1.3E-06 54.2 15.6 144 246-396 351-534 (557)
382 KOG4441 Proteins containing BT 96.7 0.44 9.6E-06 48.1 21.4 144 246-396 380-547 (571)
383 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 0.27 5.9E-06 46.9 18.5 87 370-459 312-404 (415)
384 COG3391 Uncharacterized conser 96.6 0.69 1.5E-05 44.3 23.5 194 238-455 76-285 (381)
385 COG3204 Uncharacterized protei 96.6 0.45 9.7E-06 42.3 17.7 168 158-356 82-265 (316)
386 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0077 1.7E-07 37.5 5.1 35 234-269 10-44 (47)
387 PF14870 PSII_BNR: Photosynthe 96.5 0.63 1.4E-05 42.5 21.6 155 159-351 142-301 (302)
388 KOG4499 Ca2+-binding protein R 96.5 0.091 2E-06 44.8 12.3 124 143-289 139-265 (310)
389 COG3490 Uncharacterized protei 96.4 0.14 2.9E-06 45.1 13.5 194 168-395 120-348 (366)
390 KOG2079 Vacuolar assembly/sort 96.4 0.013 2.8E-07 60.2 8.5 102 172-306 98-203 (1206)
391 KOG1897 Damage-specific DNA bi 96.2 1.9 4.2E-05 44.8 30.1 305 123-455 530-900 (1096)
392 PF12894 Apc4_WD40: Anaphase-p 96.2 0.023 5E-07 35.4 5.6 31 161-191 11-41 (47)
393 KOG4499 Ca2+-binding protein R 96.2 0.71 1.5E-05 39.6 17.9 138 236-378 109-264 (310)
394 KOG1916 Nuclear protein, conta 96.1 0.00073 1.6E-08 67.5 -2.2 193 142-403 110-328 (1283)
395 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.9 2.1 4.5E-05 43.0 26.3 70 240-309 238-336 (527)
396 KOG1916 Nuclear protein, conta 95.9 0.037 8.1E-07 56.0 8.4 176 274-458 129-328 (1283)
397 PF14655 RAB3GAP2_N: Rab3 GTPa 95.9 1.8 3.8E-05 41.6 26.1 75 322-397 305-400 (415)
398 PF10168 Nup88: Nuclear pore c 95.8 2.6 5.6E-05 43.7 21.3 93 162-267 85-181 (717)
399 PHA03098 kelch-like protein; P 95.7 0.95 2.1E-05 45.7 18.3 187 246-455 294-513 (534)
400 PHA03098 kelch-like protein; P 95.7 1.1 2.4E-05 45.2 18.5 152 246-405 342-520 (534)
401 PF15390 DUF4613: Domain of un 95.5 1.6 3.6E-05 42.7 17.3 118 233-355 54-187 (671)
402 KOG3630 Nuclear pore complex, 95.5 0.32 7E-06 50.9 13.3 137 236-378 101-254 (1405)
403 KOG2280 Vacuolar assembly/sort 95.0 4.3 9.4E-05 41.1 19.0 51 143-194 64-115 (829)
404 PHA02790 Kelch-like protein; P 95.0 3.5 7.5E-05 41.0 19.1 184 246-455 271-472 (480)
405 KOG1898 Splicing factor 3b, su 95.0 4.4 9.6E-05 42.6 19.5 112 330-458 939-1053(1205)
406 PF05096 Glu_cyclase_2: Glutam 94.7 2.9 6.3E-05 37.1 21.5 177 236-424 45-244 (264)
407 PF10647 Gmad1: Lipoprotein Lp 94.6 3.2 6.9E-05 37.1 24.1 150 163-347 25-188 (253)
408 KOG2280 Vacuolar assembly/sort 94.6 1.3 2.8E-05 44.6 14.3 163 107-274 67-255 (829)
409 KOG2377 Uncharacterized conser 94.6 1.4 3E-05 41.7 13.7 137 281-423 26-166 (657)
410 KOG2247 WD40 repeat-containing 94.6 0.0045 9.7E-08 58.1 -2.2 141 129-301 42-183 (615)
411 PF08728 CRT10: CRT10; InterP 94.5 1.9 4.2E-05 43.9 15.7 120 326-452 102-245 (717)
412 TIGR03118 PEPCTERM_chp_1 conse 94.4 3.7 8E-05 37.0 24.7 232 164-423 25-310 (336)
413 PF12234 Rav1p_C: RAVE protein 94.4 1.9 4.1E-05 43.5 15.3 114 325-453 30-156 (631)
414 KOG3630 Nuclear pore complex, 94.2 0.61 1.3E-05 49.0 11.6 156 162-341 101-260 (1405)
415 PF12234 Rav1p_C: RAVE protein 94.1 1.9 4.1E-05 43.5 14.5 113 239-353 33-155 (631)
416 TIGR03074 PQQ_membr_DH membran 94.0 9.2 0.0002 40.2 23.2 214 173-398 194-480 (764)
417 KOG1897 Damage-specific DNA bi 94.0 9.4 0.0002 40.1 26.6 240 144-420 471-724 (1096)
418 TIGR02604 Piru_Ver_Nterm putat 94.0 2.8 6E-05 40.0 15.3 107 236-343 14-142 (367)
419 PF10168 Nup88: Nuclear pore c 93.9 2 4.4E-05 44.4 14.8 28 236-264 85-112 (717)
420 COG5276 Uncharacterized conser 93.9 4.6 0.0001 36.1 25.5 157 234-398 85-244 (370)
421 PHA02790 Kelch-like protein; P 93.9 4.9 0.00011 39.9 17.2 141 246-396 318-471 (480)
422 PF08728 CRT10: CRT10; InterP 93.8 5.9 0.00013 40.6 17.4 104 246-353 113-245 (717)
423 PF07995 GSDH: Glucose / Sorbo 93.7 6 0.00013 37.1 27.6 60 376-448 270-330 (331)
424 COG3490 Uncharacterized protei 93.7 4.9 0.00011 35.8 15.9 205 128-353 120-347 (366)
425 PF14727 PHTB1_N: PTHB1 N-term 93.6 7.3 0.00016 37.5 29.9 283 133-459 37-366 (418)
426 KOG2377 Uncharacterized conser 93.5 2 4.4E-05 40.7 12.5 104 234-343 65-172 (657)
427 PF07569 Hira: TUP1-like enhan 93.5 0.76 1.7E-05 40.0 9.6 69 124-193 13-97 (219)
428 PF12657 TFIIIC_delta: Transcr 93.2 0.76 1.6E-05 38.4 9.0 38 411-455 86-123 (173)
429 PF10313 DUF2415: Uncharacteri 93.2 0.42 9E-06 28.9 5.2 32 325-356 1-35 (43)
430 TIGR03074 PQQ_membr_DH membran 93.2 13 0.00028 39.1 20.6 63 247-309 194-281 (764)
431 COG3204 Uncharacterized protei 93.2 6.1 0.00013 35.4 22.0 163 234-396 84-264 (316)
432 PF14727 PHTB1_N: PTHB1 N-term 93.2 8.6 0.00019 37.1 25.1 146 173-354 37-204 (418)
433 PLN02153 epithiospecifier prot 93.1 7.9 0.00017 36.4 21.7 51 346-396 217-285 (341)
434 PF10647 Gmad1: Lipoprotein Lp 93.1 6.3 0.00014 35.3 20.3 137 128-294 30-182 (253)
435 PRK13684 Ycf48-like protein; P 92.4 9.6 0.00021 35.7 24.2 153 235-394 172-330 (334)
436 COG5167 VID27 Protein involved 92.4 3.3 7.1E-05 39.9 12.4 97 251-354 531-632 (776)
437 COG5167 VID27 Protein involved 92.3 3.8 8.2E-05 39.5 12.8 140 246-395 478-632 (776)
438 PF10313 DUF2415: Uncharacteri 92.2 0.75 1.6E-05 27.9 5.3 31 236-266 1-34 (43)
439 PF07995 GSDH: Glucose / Sorbo 92.2 5.4 0.00012 37.4 14.1 106 237-344 3-133 (331)
440 PF07569 Hira: TUP1-like enhan 92.2 1 2.3E-05 39.2 8.6 64 243-306 18-95 (219)
441 PF05694 SBP56: 56kDa selenium 92.1 11 0.00025 36.0 18.8 194 246-457 86-346 (461)
442 PF15390 DUF4613: Domain of un 92.0 5.1 0.00011 39.5 13.5 150 278-454 20-187 (671)
443 KOG1896 mRNA cleavage and poly 91.9 21 0.00046 38.5 25.5 152 290-457 1048-1217(1366)
444 TIGR02604 Piru_Ver_Nterm putat 91.3 8.2 0.00018 36.8 14.5 136 279-423 15-196 (367)
445 KOG1900 Nuclear pore complex, 91.3 1.7 3.6E-05 46.7 10.2 167 254-455 96-274 (1311)
446 PLN02193 nitrile-specifier pro 91.2 17 0.00036 36.0 23.1 152 246-404 228-418 (470)
447 COG4590 ABC-type uncharacteriz 91.1 3.2 6.9E-05 39.3 10.8 171 270-459 213-392 (733)
448 KOG1900 Nuclear pore complex, 90.9 4.3 9.3E-05 43.8 12.7 79 275-355 176-273 (1311)
449 KOG1983 Tomosyn and related SN 90.7 4.9 0.00011 43.5 13.5 71 322-397 196-266 (993)
450 PF08801 Nucleoporin_N: Nup133 90.6 8.2 0.00018 37.6 14.1 31 412-455 191-221 (422)
451 COG5276 Uncharacterized conser 90.2 13 0.00029 33.3 28.1 273 123-453 86-369 (370)
452 PRK14131 N-acetylneuraminic ac 90.1 18 0.00039 34.6 19.2 16 371-386 338-353 (376)
453 PF14761 HPS3_N: Hermansky-Pud 90.0 11 0.00025 32.2 15.5 144 248-394 29-213 (215)
454 KOG4460 Nuclear pore complex, 89.9 7.5 0.00016 37.7 12.3 92 237-355 105-199 (741)
455 PF14583 Pectate_lyase22: Olig 89.9 18 0.00039 34.2 21.4 212 168-423 42-295 (386)
456 PF05096 Glu_cyclase_2: Glutam 89.8 14 0.00031 32.9 21.6 156 162-356 45-205 (264)
457 PF10433 MMS1_N: Mono-function 89.0 27 0.00058 35.0 24.5 249 133-420 222-503 (504)
458 COG4257 Vgb Streptogramin lyas 88.9 16 0.00036 32.5 15.8 199 239-454 65-263 (353)
459 COG4590 ABC-type uncharacteriz 88.1 2.8 6.1E-05 39.7 8.1 160 234-396 219-387 (733)
460 COG1520 FOG: WD40-like repeat 87.9 25 0.00055 33.5 21.6 62 246-308 111-173 (370)
461 PF14761 HPS3_N: Hermansky-Pud 87.7 17 0.00036 31.2 13.9 127 129-267 23-165 (215)
462 COG3292 Predicted periplasmic 87.7 31 0.00066 34.2 15.7 147 123-305 164-317 (671)
463 KOG1983 Tomosyn and related SN 87.7 10 0.00023 41.1 13.3 31 236-266 36-66 (993)
464 PF12768 Rax2: Cortical protei 86.3 26 0.00055 31.9 14.2 135 297-442 15-169 (281)
465 TIGR03548 mutarot_permut cycli 86.0 29 0.00064 32.3 22.4 105 246-355 72-195 (323)
466 KOG4460 Nuclear pore complex, 86.0 37 0.00079 33.3 14.6 102 326-461 105-206 (741)
467 TIGR02276 beta_rpt_yvtn 40-res 85.9 5.4 0.00012 23.7 6.2 31 245-275 1-32 (42)
468 PRK10115 protease 2; Provision 85.7 50 0.0011 34.6 29.4 111 162-306 127-255 (686)
469 PF11715 Nup160: Nucleoporin N 85.3 3 6.6E-05 42.2 7.7 38 237-274 216-257 (547)
470 PF02333 Phytase: Phytase; In 85.0 36 0.00077 32.3 22.0 197 245-455 66-292 (381)
471 KOG2247 WD40 repeat-containing 84.8 0.14 3.1E-06 48.4 -1.9 137 240-386 39-179 (615)
472 PF11715 Nup160: Nucleoporin N 84.4 6.8 0.00015 39.7 9.7 70 375-457 156-252 (547)
473 KOG2714 SETA binding protein S 84.4 38 0.00083 32.2 15.2 158 255-455 296-461 (465)
474 PF14781 BBS2_N: Ciliary BBSom 84.3 18 0.00039 28.4 13.0 103 290-396 12-126 (136)
475 PF07250 Glyoxal_oxid_N: Glyox 83.7 31 0.00067 30.5 13.6 135 259-396 48-198 (243)
476 PF12341 DUF3639: Protein of u 83.4 3.8 8.3E-05 22.0 3.9 24 125-148 3-26 (27)
477 PF12657 TFIIIC_delta: Transcr 83.3 10 0.00022 31.6 8.8 31 325-355 86-122 (173)
478 PLN02153 epithiospecifier prot 83.3 40 0.00088 31.7 20.1 68 335-403 137-232 (341)
479 PF02333 Phytase: Phytase; In 83.3 43 0.00092 31.8 21.1 193 172-397 67-292 (381)
480 PRK10115 protease 2; Provision 82.4 68 0.0015 33.6 32.8 66 128-193 133-209 (686)
481 TIGR01063 gyrA DNA gyrase, A s 81.6 79 0.0017 33.8 24.9 204 236-454 535-770 (800)
482 PLN02193 nitrile-specifier pro 80.9 62 0.0013 32.1 20.7 69 335-404 278-359 (470)
483 TIGR03606 non_repeat_PQQ dehyd 80.9 51 0.0011 32.3 13.5 111 276-386 28-166 (454)
484 PF08801 Nucleoporin_N: Nup133 80.6 14 0.0003 36.1 9.9 32 324-355 189-220 (422)
485 TIGR03548 mutarot_permut cycli 80.5 50 0.0011 30.7 19.1 62 335-396 123-195 (323)
486 COG5308 NUP170 Nuclear pore co 80.0 8.1 0.00018 40.1 7.9 98 255-354 100-209 (1263)
487 COG5290 IkappaB kinase complex 79.3 27 0.00059 36.0 11.1 261 155-454 10-325 (1243)
488 COG3823 Glutamine cyclotransfe 78.4 42 0.00091 28.7 14.2 170 246-424 55-242 (262)
489 smart00564 PQQ beta-propeller 77.1 5.9 0.00013 22.0 3.8 26 248-273 7-32 (33)
490 PF14781 BBS2_N: Ciliary BBSom 74.4 40 0.00088 26.5 11.9 106 240-355 3-126 (136)
491 smart00036 CNH Domain found in 74.3 72 0.0016 29.4 27.4 60 133-193 13-75 (302)
492 PF07676 PD40: WD40-like Beta 74.3 14 0.0003 21.5 5.1 31 408-450 6-38 (39)
493 PF10395 Utp8: Utp8 family; I 73.9 1.1E+02 0.0024 31.4 17.1 33 161-193 129-161 (670)
494 PF01011 PQQ: PQQ enzyme repea 72.2 9.7 0.00021 22.3 3.9 27 249-275 2-28 (38)
495 PRK14131 N-acetylneuraminic ac 72.0 94 0.002 29.7 21.7 14 373-386 276-289 (376)
496 COG3292 Predicted periplasmic 71.8 39 0.00083 33.6 9.7 151 276-449 163-314 (671)
497 COG3823 Glutamine cyclotransfe 71.7 64 0.0014 27.7 12.9 31 172-202 55-87 (262)
498 PRK13684 Ycf48-like protein; P 71.6 90 0.0019 29.3 29.6 154 277-452 172-330 (334)
499 TIGR03547 muta_rot_YjhT mutatr 71.5 91 0.002 29.3 21.2 227 128-387 13-332 (346)
500 PRK05560 DNA gyrase subunit A; 70.8 1.5E+02 0.0034 31.7 25.9 158 236-395 537-721 (805)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-49 Score=342.52 Aligned_cols=294 Identities=27% Similarity=0.386 Sum_probs=260.4
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
.-.++.||.+.|.|+.|+ |..||+|+.|.++|+||.. ....+.++|...|.|++|+|||+.||+|+.||.|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 355788999999998765 7899999999999999865 678889999999999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-----CCCEEEEEeCCCCEEEEEcC
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-----EQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~~~l~s~s~dg~v~vwd~~ 265 (473)
.+++..-... .+|...|++++|.| ..++|++++.||.|+|||+.
T Consensus 187 ktg~~~g~~l-------------------------------~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 187 KTGQQIGRAL-------------------------------RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred CCCCcccccc-------------------------------cCcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 8887543322 25999999999987 56799999999999999999
Q ss_pred CCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc-----------c
Q 012007 266 DCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN-----------Q 334 (473)
Q Consensus 266 ~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-----------~ 334 (473)
.++++..+.+|..+|+|+.|.-++++++|+.|++|++|+... ..+...+.+|...|+.|+.+ |
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d------G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD------GKLCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred CceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccc------hhHHHhhcccchheeeeeccchhhhhcccccc
Confidence 999999999999999999999999999999999999999853 33567889999999998876 3
Q ss_pred CCC-------------------------EEEEeCCCCcEEEEecCCcccccceeecCcceEEE--EEecCCEEEEEeCCC
Q 012007 335 ESA-------------------------VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC--LAAAGNLVFSGSADR 387 (473)
Q Consensus 335 ~~~-------------------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~s~~~dg 387 (473)
.++ .|++|+.|.++.+|+.....++...+.+|...|.. |+||++++|+++.|.
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 333 49999999999999988777777788899988854 567899999999999
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
.|++|+.++ ++.+..++||-++|..++|+.|.+ +|++|+.|.+++||++.+.+.....
T Consensus 390 SVkLW~g~t---Gk~lasfRGHv~~VYqvawsaDsR-------------LlVS~SkDsTLKvw~V~tkKl~~DL 447 (480)
T KOG0271|consen 390 SVKLWDGRT---GKFLASFRGHVAAVYQVAWSADSR-------------LLVSGSKDSTLKVWDVRTKKLKQDL 447 (480)
T ss_pred ceeeeeCCC---cchhhhhhhccceeEEEEeccCcc-------------EEEEcCCCceEEEEEeeeeeecccC
Confidence 999999999 688999999999999999999998 9999999999999999987655443
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-46 Score=325.53 Aligned_cols=316 Identities=23% Similarity=0.390 Sum_probs=269.4
Q ss_pred CCCCCCCCCCccCCCCCCCC------CCCCCCCCCCCCCCCCcccccccccceeeeeeecccEEEEE--ecCCEEEEeeC
Q 012007 70 TPTSGEASPYLMSPWNNQPV------SPYTKSPWIMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLA--ASGDLLYTGSD 141 (473)
Q Consensus 70 ~~~~~~~~p~~~~~~~~~~~------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~h~~~V~~~~--~~g~~l~tg~~ 141 (473)
+..+||..|+++..++|+.. .+.+.+.|-. . ......+.++|...|.|++ |||+.||+|+.
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~-----~------TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDL-----D------TETPLFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeecc-----C------CCCcceeecCCccEEEEEEECCCcchhhcccc
Confidence 55788999999999988443 2223333322 1 2234667889999999887 56999999999
Q ss_pred CCcEEEeeCC---ccccccccCcccEEEEEEeC-----CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEee
Q 012007 142 SKNIRVWKNL---KEFSGFKSNSGLVKAIIISG-----DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKS 213 (473)
Q Consensus 142 dg~i~vwd~~---~~~~~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 213 (473)
||.|++||.. .....+.+|...|++++|.| ..++||+++.||.|+|||+..+.+.....
T Consensus 178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls------------- 244 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS------------- 244 (480)
T ss_pred CCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-------------
Confidence 9999999954 34567999999999999965 56799999999999999998876544333
Q ss_pred cCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-----
Q 012007 214 SVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD----- 288 (473)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~----- 288 (473)
+|+.+|+|+.|--+ .++++|+.|++|++|+...|++.+.+++|...|+.++.+.+
T Consensus 245 -------------------gHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 245 -------------------GHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred -------------------cCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence 69999999999754 59999999999999999999999999999999999987721
Q ss_pred --------------------------------CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC
Q 012007 289 --------------------------------SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES 336 (473)
Q Consensus 289 --------------------------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 336 (473)
..+++|+.|.++.+|+.. ....++..+.+|..-|+.+.|+||+
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~-----~~kkpi~rmtgHq~lVn~V~fSPd~ 379 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF-----KSKKPITRMTGHQALVNHVSFSPDG 379 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc-----ccccchhhhhchhhheeeEEECCCc
Confidence 159999999999999976 3444667889999999999999999
Q ss_pred CEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCcee
Q 012007 337 AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414 (473)
Q Consensus 337 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~ 414 (473)
+++++++.|..|++||.++++. ...+++|-..|..+++ |.++|++|+.|.++++|++++ .+....+.||...|.
T Consensus 380 r~IASaSFDkSVkLW~g~tGk~-lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t---kKl~~DLpGh~DEVf 455 (480)
T KOG0271|consen 380 RYIASASFDKSVKLWDGRTGKF-LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT---KKLKQDLPGHADEVF 455 (480)
T ss_pred cEEEEeecccceeeeeCCCcch-hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee---eeecccCCCCCceEE
Confidence 9999999999999999998754 4688999999987776 477999999999999999999 688889999999999
Q ss_pred EEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
++.|+||+. .+++|+.|+.+++|.
T Consensus 456 ~vDwspDG~-------------rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 456 AVDWSPDGQ-------------RVASGGKDKVLRLWR 479 (480)
T ss_pred EEEecCCCc-------------eeecCCCceEEEeec
Confidence 999999999 899999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9e-46 Score=324.01 Aligned_cols=276 Identities=22% Similarity=0.367 Sum_probs=246.5
Q ss_pred eecccEEE--EEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCC
Q 012007 121 RKEGHIYS--LAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGD--SNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 121 ~h~~~V~~--~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
+.+.+|.. ++.+++.||||+.+|.++||+.. ..+..|.+|...|.++.|+|. +..||||+.||++++|++++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 44555554 45569999999999999999855 567889999999999999997 5689999999999999998764
Q ss_pred eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 195 ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
...... +|...|..++|+|+|++|++++.|.+-++||++++..+...+
T Consensus 253 ~l~~l~--------------------------------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE 300 (459)
T KOG0272|consen 253 PLQDLE--------------------------------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE 300 (459)
T ss_pred chhhhh--------------------------------cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc
Confidence 433222 599999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 275 AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
+|...|.+++|.++| ++++|+.|..-+|||++++. .+..+.+|..+|.+++|+|+|..||+|+.|++++|||+
T Consensus 301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr------~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR------CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL 374 (459)
T ss_pred ccccccceeEecCCCceeeccCccchhheeecccCc------EEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence 999999999999999 88899999999999998544 35678889999999999999999999999999999999
Q ss_pred CCcccccceeecCcceEEEEE--e-cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccccc
Q 012007 354 EKHLSHGGVLRGHKMAVLCLA--A-AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQ 430 (473)
Q Consensus 354 ~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~ 430 (473)
+.... ...+.+|...|..+. + .|.+|++++.|++++||...+ +.+++.+.||.+.|.++++++++.
T Consensus 375 R~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~---~~~~ksLaGHe~kV~s~Dis~d~~------- 443 (459)
T KOG0272|consen 375 RMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT---WSPLKSLAGHEGKVISLDISPDSQ------- 443 (459)
T ss_pred ccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCC---cccchhhcCCccceEEEEeccCCc-------
Confidence 97544 567889999886554 4 489999999999999999888 899999999999999999999999
Q ss_pred CCCccEEEEEeeCCCcEEEEE
Q 012007 431 KGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 431 ~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+++|++.|.++++|.
T Consensus 444 ------~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 444 ------AIATSSFDRTIKLWR 458 (459)
T ss_pred ------eEEEeccCceeeecc
Confidence 899999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.6e-41 Score=280.01 Aligned_cols=288 Identities=21% Similarity=0.341 Sum_probs=244.3
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
..++|+||.+.|+++.+. .+.|++++.||.+.|||.. .....+.-....|..++|+|.|+++|.|+.|+...||++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 458899999999999875 7899999999999999954 556666777899999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
.+.+......+ ...+.+|++.+.|+.|-+| ..|++++.|.+..+||+++++.+
T Consensus 127 s~~d~~g~~~v--------------------------~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 127 STRDAEGNVRV--------------------------SRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQT 179 (343)
T ss_pred cccccccccee--------------------------eeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEE
Confidence 86532111110 0112359999999999874 57899999999999999999999
Q ss_pred EEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcE
Q 012007 271 ESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 348 (473)
..+.+|.+.|.++.++| ++ .+++|+.|+..++||++.+ ...+.+.+|+..|++++|.|+|.-+++|+.|++.
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~------~c~qtF~ghesDINsv~ffP~G~afatGSDD~tc 253 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG------QCVQTFEGHESDINSVRFFPSGDAFATGSDDATC 253 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc------ceeEeecccccccceEEEccCCCeeeecCCCcee
Confidence 99999999999999999 44 8999999999999999843 3578899999999999999999999999999999
Q ss_pred EEEecCCcccccceee-cCcceEEE--EEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 349 NFWECEKHLSHGGVLR-GHKMAVLC--LAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 349 ~iwd~~~~~~~~~~~~-~~~~~v~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
++||++...+...... .-...+++ |+..|++|++|..|.++.+||.-. .+.+..+.+|.+.|++|..+||+.
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk---~e~vg~L~GHeNRvScl~~s~DG~-- 328 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK---GERVGVLAGHENRVSCLGVSPDGM-- 328 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccc---cceEEEeeccCCeeEEEEECCCCc--
Confidence 9999997655432211 11223444 455699999999999999999887 577888999999999999999998
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEE
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
.|+||+.|..+|||.
T Consensus 329 -----------av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 329 -----------AVATGSWDSTLRIWA 343 (343)
T ss_pred -----------EEEecchhHheeecC
Confidence 899999999999994
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.5e-40 Score=269.90 Aligned_cols=275 Identities=19% Similarity=0.383 Sum_probs=234.5
Q ss_pred CEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 134 DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
-+|++++.|.+||+|... .+..++....+.|+.+.+.|++++||+++.- .||+||+.+.+.......
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~---------- 79 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATF---------- 79 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEE----------
Confidence 479999999999999854 5667788778999999999999999998765 799999998875332222
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-E
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-L 290 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~ 290 (473)
.+|...|..+.|..+|+++++|++||+++|||++...+.+.++ |..+|+++..+|+. .
T Consensus 80 --------------------e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQte 138 (311)
T KOG0315|consen 80 --------------------EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTE 138 (311)
T ss_pred --------------------eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcce
Confidence 2599999999999999999999999999999999977766665 67999999999987 8
Q ss_pred EEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC-----cccccceeec
Q 012007 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK-----HLSHGGVLRG 365 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~ 365 (473)
|++|..+|.|++||+.. ..+...........|.++...|||.+|+.+...|..++|++-+ ...+...++.
T Consensus 139 Lis~dqsg~irvWDl~~-----~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGE-----NSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred EEeecCCCcEEEEEccC-----CccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence 99999999999999973 2233344455568899999999999999999999999999854 3344456778
Q ss_pred CcceEE--EEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC
Q 012007 366 HKMAVL--CLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 366 ~~~~v~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~ 443 (473)
|...++ -++|++++|++++.|.+++||+.++. .+....+.+|+..+.+.+|+.|+. +|+||+.
T Consensus 214 h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~-------------YlvTass 278 (311)
T KOG0315|consen 214 HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGE-------------YLVTASS 278 (311)
T ss_pred ccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCcc-------------EEEecCC
Confidence 887774 46789999999999999999999884 477778899999999999999999 9999999
Q ss_pred CCcEEEEEcCCCCCCcc
Q 012007 444 DKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 444 Dg~v~iW~i~~~~~~~~ 460 (473)
|+.+++|++..++....
T Consensus 279 d~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 279 DHTARLWDLSAGKEVRQ 295 (311)
T ss_pred CCceeecccccCceeee
Confidence 99999999999885444
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-39 Score=270.76 Aligned_cols=285 Identities=22% Similarity=0.378 Sum_probs=234.3
Q ss_pred cceeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCC-------ccccccccCcccEEEEEEeCCCCEEEEEeCCC
Q 012007 114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL-------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~-------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 183 (473)
.+..+|.+|.+.|.+++-. .+.+++++.|.++.+|++. ..++.+.+|+..|..++.++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 3567899999999998853 6799999999999999753 34778999999999999999999999999999
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEE
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd 263 (473)
++++||+.+++....+. +|...|.+++|++|...+++|+.|.+|++|+
T Consensus 86 ~lrlWDl~~g~~t~~f~--------------------------------GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFV--------------------------------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred eEEEEEecCCcEEEEEE--------------------------------ecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 99999999986544433 6999999999999999999999999999999
Q ss_pred cCCCeeeEEeec-CCCceeEEEEcCCC---EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE
Q 012007 264 ISDCKCLESINA-HDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV 339 (473)
Q Consensus 264 ~~~~~~~~~~~~-~~~~v~~l~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 339 (473)
+........... +.+.|+|+.|+|.. .|++++.|++|++||++ ...+...+.+|...++.++++|||.+.
T Consensus 134 t~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~------~~~l~~~~~gh~~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 134 TLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR------NCQLRTTFIGHSGYVNTVTVSPDGSLC 207 (315)
T ss_pred ecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC------CcchhhccccccccEEEEEECCCCCEE
Confidence 865444333333 27899999999984 89999999999999996 344567788999999999999999999
Q ss_pred EEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEec----CC-----
Q 012007 340 YCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLT----GH----- 409 (473)
Q Consensus 340 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~h----- 409 (473)
++|+.||.+.+||++.++.+ ...+|...|.++++. .++.+++..+..|+|||+.+. .++..+. +.
T Consensus 208 asGgkdg~~~LwdL~~~k~l--ysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~---~~v~~l~~d~~g~s~~~~ 282 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGKNL--YSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESK---AVVEELKLDGIGPSSKAG 282 (315)
T ss_pred ecCCCCceEEEEEccCCcee--EeccCCCeEeeEEecCCceeEeeccCCceEEEeccch---hhhhhccccccccccccC
Confidence 99999999999999987664 444577777666665 334444455667999999983 3443332 11
Q ss_pred CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 410 ~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.-...+++|+++|. .|++|-.|+.|++|.+..
T Consensus 283 ~~~clslaws~dG~-------------tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 283 DPICLSLAWSADGQ-------------TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CcEEEEEEEcCCCc-------------EEEeeecCCcEEEEEeec
Confidence 22357889999999 799999999999999853
No 7
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.1e-40 Score=281.19 Aligned_cols=302 Identities=21% Similarity=0.381 Sum_probs=260.0
Q ss_pred CCCCCCCCCCCCcccccccccceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEE
Q 012007 94 KSPWIMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIII 169 (473)
Q Consensus 94 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~ 169 (473)
.+.|..|.|..... +.+.+.+|.+.|.|++.+ .+++++|+.|++|+|||+. +...++.+|-..|..+++
T Consensus 129 ~~~~~rPeWHapwK-------l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vav 201 (460)
T KOG0285|consen 129 ASRMPRPEWHAPWK-------LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAV 201 (460)
T ss_pred cccCCCccccCcce-------ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeee
Confidence 44566766765544 467788999999999877 6799999999999999976 455678899999999999
Q ss_pred eCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCE
Q 012007 170 SGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL 249 (473)
Q Consensus 170 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 249 (473)
++...||++++.|+.|+.||++..+.+.... +|-+.|.|++.+|.-+.
T Consensus 202 S~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh--------------------------------GHlS~V~~L~lhPTldv 249 (460)
T KOG0285|consen 202 SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH--------------------------------GHLSGVYCLDLHPTLDV 249 (460)
T ss_pred cccCceEEEecCCCeeEEEechhhhhHHHhc--------------------------------cccceeEEEecccccee
Confidence 9999999999999999999999887665443 59999999999999999
Q ss_pred EEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE
Q 012007 250 LYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT 328 (473)
Q Consensus 250 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 328 (473)
|++|+.|.+++|||+++...+..+.+|..+|..+.+.+-+ .+++|+.|++|++||++.+. ....+..|...|.
T Consensus 250 l~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk------t~~tlt~hkksvr 323 (460)
T KOG0285|consen 250 LVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK------TMITLTHHKKSVR 323 (460)
T ss_pred EEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc------eeEeeecccceee
Confidence 9999999999999999999999999999999999987654 99999999999999998543 3567788999999
Q ss_pred EEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEec
Q 012007 329 ALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 329 ~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 407 (473)
+++.+|....+++++.| .|+-|++..+..... +.+|...+.+++.+ ..++++|+.+|.|.+||.+++...+..+...
T Consensus 324 al~lhP~e~~fASas~d-nik~w~~p~g~f~~n-lsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~v 401 (460)
T KOG0285|consen 324 ALCLHPKENLFASASPD-NIKQWKLPEGEFLQN-LSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIV 401 (460)
T ss_pred EEecCCchhhhhccCCc-cceeccCCccchhhc-cccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccc
Confidence 99999999999999887 599999988765544 88999999999876 7799999999999999999865555554333
Q ss_pred C-----CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 408 G-----HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 408 ~-----h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
. ....|.+.+|...+. .|+||..|++|++|+-.+.
T Consensus 402 qpGSl~sEagI~as~fDktg~-------------rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 402 QPGSLESEAGIFASCFDKTGS-------------RLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cCCccccccceeEEeecccCc-------------eEEeccCCcceEEEecccc
Confidence 2 244689999999988 7999999999999987654
No 8
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.9e-39 Score=265.22 Aligned_cols=289 Identities=22% Similarity=0.336 Sum_probs=242.6
Q ss_pred ceeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCCc-----cccc-cccCcccEEEEEEeCCCCEEEEEeCCCeE
Q 012007 115 LIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK-----EFSG-FKSNSGLVKAIIISGDSNKIFTGHQDGKI 185 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~~-----~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 185 (473)
++..+.+|.+.|..++++ |..||+|+.|+.||||+... .... -.+|+..|..++|+|.|++|++|+.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 467889999999999987 34899999999999998763 1111 23699999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
.||.-..++...... +.||...|.|++|+++|++||+++.|+.|-||.+.
T Consensus 86 ~Iw~k~~~efecv~~------------------------------lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 86 VIWKKEDGEFECVAT------------------------------LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred EEeecCCCceeEEee------------------------------eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 999987665443332 23699999999999999999999999999999986
Q ss_pred C---CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE
Q 012007 266 D---CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 266 ~---~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
. .+++..++.|...|..+.|+|.. +|++++.|.+|++|+-.. .......+.+.+|...|.+++|++.|..|++
T Consensus 136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~---dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s 212 (312)
T KOG0645|consen 136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED---DDDWECVQTLDGHENTVWSLAFDNIGSRLVS 212 (312)
T ss_pred CCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC---CCCeeEEEEecCccceEEEEEecCCCceEEE
Confidence 4 46788899999999999999976 999999999999998763 2466778899999999999999999999999
Q ss_pred eCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCC---CceeEE-EEecCCCCceeEEE
Q 012007 342 GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREES---GAHSCL-AVLTGHTGPVKCLA 417 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~-~~~~~h~~~V~~l~ 417 (473)
++.|++|+||-.... ....|...+..++++...|++++.|+.|++|..... .....+ ..-..|...|++++
T Consensus 213 ~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~ 287 (312)
T KOG0645|consen 213 CSDDGTVSIWRLYTD-----LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQ 287 (312)
T ss_pred ecCCcceEeeeeccC-----cchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEE
Confidence 999999999986632 334577788888888889999999999999987642 112222 24457888999999
Q ss_pred EecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 418 VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
|.|.... +|++|+.||.|++|.+.
T Consensus 288 w~p~~~~------------~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 288 WNPKVSN------------RLASGGDDGIVNFWELE 311 (312)
T ss_pred EcCCCCC------------ceeecCCCceEEEEEec
Confidence 9995443 89999999999999875
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-40 Score=288.93 Aligned_cols=241 Identities=22% Similarity=0.351 Sum_probs=219.5
Q ss_pred cceeeeeeecccEEEEEec----CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 114 GLIGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~----g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
.++.+|.+|.+.|.++.|. +..||||+.||+|++|+.. ..+..+.+|...|..++|+|+|++|+|++.|.+-++
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 5678999999999998875 4489999999999999865 678899999999999999999999999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
||+.++....... ||...|.+++|.+||.++++|+.|..-+|||++++
T Consensus 288 WD~~tk~ElL~QE--------------------------------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg 335 (459)
T KOG0272|consen 288 WDLETKSELLLQE--------------------------------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG 335 (459)
T ss_pred cccccchhhHhhc--------------------------------ccccccceeEecCCCceeeccCccchhheeecccC
Confidence 9999887544333 69999999999999999999999999999999999
Q ss_pred eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCC
Q 012007 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSD 345 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d 345 (473)
+++..+.+|...|.++.|+|+| .+++|+.|++++|||++.. .....+.+|.+-|+.+.|+| .|.+|++++.|
T Consensus 336 r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 336 RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc------ccceecccccchhhheEecccCCeEEEEcccC
Confidence 9999999999999999999999 7999999999999999843 23788899999999999998 78999999999
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEe
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd 393 (473)
++++||..++. .+.+.+.||...|.++. +++.++++++.|+++++|.
T Consensus 410 ~t~kiWs~~~~-~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 410 NTVKIWSTRTW-SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceeeecCCCc-ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999998874 55678999999997765 6799999999999999995
No 10
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7e-40 Score=291.88 Aligned_cols=287 Identities=15% Similarity=0.307 Sum_probs=251.0
Q ss_pred cccceeeeeeecccEEEEEe---cCCEEEEeeCCCcEEEeeCC---ccccccccCcccEEEEEEeCCCCEEEEEeCCCeE
Q 012007 112 CNGLIGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNL---KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKI 185 (473)
Q Consensus 112 ~~~~~~~l~~h~~~V~~~~~---~g~~l~tg~~dg~i~vwd~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 185 (473)
...++.++.+|...|.++.+ .+.+|++|+.|+.|+||++. +.++++.+|..+|.+++|+.+|..+++++.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 45678899999999999875 47899999999999999854 6789999999999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEEc
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~ 264 (473)
++||++++++...+. ....++|+.|+|++ +.+++|+.|+.|+.||+
T Consensus 283 KlwDtETG~~~~~f~---------------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH---------------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred eeeccccceEEEEEe---------------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 999999999877665 44568899999988 89999999999999999
Q ss_pred CCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC
Q 012007 265 SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 265 ~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
++++.++++..|-+.|..+.|-+++ .+++.+.|+.++||+.+.. ..+......+.-...++..+|++.++++-+
T Consensus 330 Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~-----v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 330 RSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP-----VPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred cchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC-----ccchhhcchhhccCcceecCCCCCeehhhc
Confidence 9999999999999999999999988 9999999999999998732 223334444555678899999999999999
Q ss_pred CCCcEEEEecCCcc--cccceeecCcceE----EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEE
Q 012007 344 SDGLVNFWECEKHL--SHGGVLRGHKMAV----LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLA 417 (473)
Q Consensus 344 ~dg~i~iwd~~~~~--~~~~~~~~~~~~v----~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 417 (473)
.|+.|.+|.+.... .....+.+|..+- ..++|||.+|++|..||.+.+||.++ .+.+..+.+|.+++..+.
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt---~kl~~~lkah~~~ci~v~ 481 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT---TKLVSKLKAHDQPCIGVD 481 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh---hhhhhccccCCcceEEEE
Confidence 99999999875432 2234566776543 55788999999999999999999999 788999999999999999
Q ss_pred EecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 418 VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
|+|.... .+|||+.||.|++|+
T Consensus 482 wHP~e~S------------kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 482 WHPVEPS------------KVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCCcc------------eeEecccCceeEecC
Confidence 9999876 799999999999996
No 11
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5e-38 Score=264.10 Aligned_cols=284 Identities=23% Similarity=0.371 Sum_probs=241.9
Q ss_pred cceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC---ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL---KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
..+..+.+|+|.|+.+.| +|.+||+||.|..|.+|++. +....+++|+++|..+.|.+|++.|++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 456678899999988765 58999999999999999865 4466788999999999999999999999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEEcCCC
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~~~~ 267 (473)
|+++++.....+ +|.+-|+.+.-..-| .++.+|+.|+++++||+++.
T Consensus 118 D~~tG~~~rk~k--------------------------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 118 DAETGKRIRKHK--------------------------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred ecccceeeehhc--------------------------------cccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence 999998766554 388888888854434 46778899999999999998
Q ss_pred eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
.+++++. ....++++.|...+ .+++|+-|+.|++||++.. .....+.+|...|+.|..+++|.++.+-+.|.
T Consensus 166 ~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~------d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 166 EAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN------DGLYTLSGHADTITGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred chhhccc-cceeEEEEEecccccceeeccccCceeeeccccC------cceEEeecccCceeeEEeccCCCccccccccc
Confidence 8888775 45679999998776 9999999999999999732 34678999999999999999999999999999
Q ss_pred cEEEEecCCc---ccccceeecCcce------EEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEE
Q 012007 347 LVNFWECEKH---LSHGGVLRGHKMA------VLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLA 417 (473)
Q Consensus 347 ~i~iwd~~~~---~~~~~~~~~~~~~------v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 417 (473)
++++||++-. .....++.+|.-. -.++++++..+.+|+.|..+++||... ...+..+.||.+.|++++
T Consensus 239 tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~---r~~lyklpGh~gsvn~~~ 315 (338)
T KOG0265|consen 239 TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS---RRILYKLPGHYGSVNEVD 315 (338)
T ss_pred eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc---ccEEEEcCCcceeEEEee
Confidence 9999999742 2223455554322 256778899999999999999999988 688999999999999999
Q ss_pred EecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 418 VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
|+|... +|.+++.|++|.+=++
T Consensus 316 Fhp~e~-------------iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 316 FHPTEP-------------IILSCSSDKTIYLGEI 337 (338)
T ss_pred ecCCCc-------------EEEEeccCceeEeecc
Confidence 999998 9999999999987443
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-37 Score=276.57 Aligned_cols=283 Identities=23% Similarity=0.337 Sum_probs=243.4
Q ss_pred eeeecccEEEEEecC---CEEEEeeCCCcEEEeeCCc------cccccc------c----CcccEEEEEEeCCCCEEEEE
Q 012007 119 IVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKNLK------EFSGFK------S----NSGLVKAIIISGDSNKIFTG 179 (473)
Q Consensus 119 l~~h~~~V~~~~~~g---~~l~tg~~dg~i~vwd~~~------~~~~~~------~----h~~~V~~l~~s~~~~~l~s~ 179 (473)
+.+|+..|.+.+|++ .++++|+.|-+.++|++.. ....++ + .+..|++++|+.+|..||+|
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 334999999988873 3899999999999998653 111121 1 23679999999999999999
Q ss_pred eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCE
Q 012007 180 HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTL 259 (473)
Q Consensus 180 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v 259 (473)
..||.+++|+.......... .|.++|.++.|+..|++|++++.|+++
T Consensus 254 ~~~G~~riw~~~G~l~~tl~---------------------------------~HkgPI~slKWnk~G~yilS~~vD~tt 300 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNLISTLG---------------------------------QHKGPIFSLKWNKKGTYILSGGVDGTT 300 (524)
T ss_pred ecCcEEEEEecCchhhhhhh---------------------------------ccCCceEEEEEcCCCCEEEeccCCccE
Confidence 99999999998765432211 299999999999999999999999999
Q ss_pred EEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE
Q 012007 260 KVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV 339 (473)
Q Consensus 260 ~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 339 (473)
.+||..++...+.+..|..+-..+.|-.+..+++++.|+.|+|+.+. ...+..++.+|.+.|.+|.|+|.+.+|
T Consensus 301 ilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~------~~~P~~t~~GH~g~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 301 ILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVG------EDRPVKTFIGHHGEVNALKWNPTGSLL 374 (524)
T ss_pred EEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEec------CCCcceeeecccCceEEEEECCCCceE
Confidence 99999999999999999988888999988899999999999999985 344567888899999999999999999
Q ss_pred EEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-----------CCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 340 YCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-----------GNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 340 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
++++.|++++||...... ....+.+|...|..+.+. +..+++++.|++|++||+.. ..++..+..
T Consensus 375 aS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~---gv~i~~f~k 450 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES---GVPIHTLMK 450 (524)
T ss_pred EEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC---CceeEeecc
Confidence 999999999999987643 335677888888776542 56899999999999999999 688999999
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
|+.+|.+++|+|+++ ++|+|+.||.|.+|+++.++.
T Consensus 451 H~~pVysvafS~~g~-------------ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 451 HQEPVYSVAFSPNGR-------------YLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred CCCceEEEEecCCCc-------------EEEecCCCCeeEeccccchhe
Confidence 999999999999999 999999999999999987753
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-38 Score=277.35 Aligned_cols=276 Identities=22% Similarity=0.335 Sum_probs=237.7
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecc
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 203 (473)
+..+.++|+.|++|+..|.+.+|+.. .....++.|..+|.++.|++++.++++|+.+|.|++|+..-........
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~a--- 177 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQA--- 177 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhH---
Confidence 44556779999999999999999964 2334567899999999999999999999999999999986554322211
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEE
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV 283 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 283 (473)
.|...|.+++|+|+...|++++.||+|+|||....+....+.+|.-.|.++
T Consensus 178 -----------------------------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 178 -----------------------------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred -----------------------------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 266999999999999999999999999999999999999999999999999
Q ss_pred EEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce
Q 012007 284 VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362 (473)
Q Consensus 284 ~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 362 (473)
.|+|.. +|++|+.|..|++||.+++. .+..+..|...|..+.|++++++|++++.|..+++||+++. .....
T Consensus 229 dWHP~kgLiasgskDnlVKlWDprSg~------cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~ 301 (464)
T KOG0284|consen 229 DWHPTKGLIASGSKDNLVKLWDPRSGS------CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFT 301 (464)
T ss_pred ccCCccceeEEccCCceeEeecCCCcc------hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHH
Confidence 999986 99999999999999998543 35778899999999999999999999999999999999953 44467
Q ss_pred eecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEE
Q 012007 363 LRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439 (473)
Q Consensus 363 ~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~ 439 (473)
+++|...+.++.+. ..+|.+|+.||.|..|.+... ......-.+|...|++++|+|-|. +|+
T Consensus 302 ~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~--~p~~~i~~AHd~~iwsl~~hPlGh-------------il~ 366 (464)
T KOG0284|consen 302 YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE--EPLGEIPPAHDGEIWSLAYHPLGH-------------ILA 366 (464)
T ss_pred hhcchhhheeeccccccccceeeccCCCceEEEecccc--ccccCCCcccccceeeeeccccce-------------eEe
Confidence 88999999998654 789999999999999998842 223333458999999999999998 999
Q ss_pred EeeCCCcEEEEEcCCC
Q 012007 440 SGSLDKSVKVWRVSEH 455 (473)
Q Consensus 440 s~s~Dg~v~iW~i~~~ 455 (473)
+|+.|.++++|.-...
T Consensus 367 tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 367 TGSNDRTVRFWTRNRP 382 (464)
T ss_pred ecCCCcceeeeccCCC
Confidence 9999999999986543
No 14
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9e-39 Score=273.49 Aligned_cols=277 Identities=25% Similarity=0.446 Sum_probs=240.8
Q ss_pred ecccEEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 122 h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
....|+|+..|.+.+++|..|.+|+|||.. ..+..+.+|++.|.|+.| +.+.|++|+.|.+|+|||+++++.....
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHH
Confidence 456799999999999999999999999965 567789999999999999 4559999999999999999999765433
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe---eeEEeecC
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK---CLESINAH 276 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~---~~~~~~~~ 276 (473)
++|.++|..+.|+. .++++++.|.++.+||+.... +.+.+.+|
T Consensus 274 --------------------------------ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGH 319 (499)
T KOG0281|consen 274 --------------------------------IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGH 319 (499)
T ss_pred --------------------------------hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhh
Confidence 25999999999964 799999999999999997654 34567799
Q ss_pred CCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc
Q 012007 277 DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 277 ~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 356 (473)
...|+.+.|... ++++++.|.+|++|++. ....+.++.+|...|.|+.+ .++++++|++|.+|++||++.+
T Consensus 320 rAaVNvVdfd~k-yIVsASgDRTikvW~~s------t~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 320 RAAVNVVDFDDK-YIVSASGDRTIKVWSTS------TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred hhheeeeccccc-eEEEecCCceEEEEecc------ceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc
Confidence 999999998644 99999999999999985 44467889999999999988 4889999999999999999987
Q ss_pred ccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCce------eEEEEecCCCCceeEEEEecCCCCCccccc
Q 012007 357 LSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAH------SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQ 430 (473)
Q Consensus 357 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~ 430 (473)
..+ ..+.||..-|.|+.++.+.+++|+.||+|++||+..+... -|+..+..|++.|..+.|..-
T Consensus 391 ~cL-RvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f--------- 460 (499)
T KOG0281|consen 391 ACL-RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--------- 460 (499)
T ss_pred HHH-HHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce---------
Confidence 554 6889999999999999999999999999999999874322 366777889999999999865
Q ss_pred CCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 431 KGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 431 ~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
.+++++.|.+|.|||+.++.+..
T Consensus 461 ------qIvsssHddtILiWdFl~~~~~~ 483 (499)
T KOG0281|consen 461 ------QIISSSHDDTILIWDFLNGPPSA 483 (499)
T ss_pred ------EEEeccCCCeEEEEEcCCCCccc
Confidence 68999999999999998876653
No 15
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=271.73 Aligned_cols=286 Identities=20% Similarity=0.354 Sum_probs=238.4
Q ss_pred ceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC-----ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~-----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
-...|..|.+.|+-+.| +|++||+|+.|.+..+|++. +...++.+|..+|..|.|+||.++|++|+.|..+++
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 35678889999988776 49999999999999999743 446788999999999999999999999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
||+.++........ ++...+.+++|.|||..+++|+.|+++..||+. |
T Consensus 296 wDv~tgd~~~~y~~-------------------------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-g 343 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPS-------------------------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-G 343 (519)
T ss_pred ccCCcchhhhhccc-------------------------------CcCCCcceeEEccCCceeEecCCCCcEEEecCC-c
Confidence 99999876544332 255789999999999999999999999999984 4
Q ss_pred eeeEEeecC-CCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC
Q 012007 268 KCLESINAH-DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345 (473)
Q Consensus 268 ~~~~~~~~~-~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 345 (473)
..+..+++- ...|.+++..+|| .+++.+.|..|++++.+.... ..+.....+|++++++.+++++++.-.+
T Consensus 344 n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-------r~lise~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 344 NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-------RGLISEEQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-------hccccccCceeEEEEcCCCcEEEEEccc
Confidence 555555543 3568999999998 888888999999999874221 1133446789999999999999999999
Q ss_pred CcEEEEecCCcccccceeecCcceEE----EEEe-cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVL----CLAA-AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~----~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
..|++||++. ......+.||+..-. ||.. +..++++|++|+.|+||+..+ .+++.++.||...|++++|+|
T Consensus 417 qei~LWDl~e-~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s---gkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 417 QEIHLWDLEE-NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS---GKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred CeeEEeecch-hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC---CceeEeecCCcceeeEEecCC
Confidence 9999999995 445556677775543 3332 357999999999999999998 689999999999999999999
Q ss_pred CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 421 DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
...+ ++|++|+||+||||.....
T Consensus 493 ~~p~------------m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 493 ADPE------------MFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCHH------------HhhccCCCCeEEEecCCcc
Confidence 9886 8999999999999987754
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.4e-36 Score=267.98 Aligned_cols=329 Identities=20% Similarity=0.291 Sum_probs=255.4
Q ss_pred cceeeeeeecccEEEEE--ecCCEEEEeeCCCcEEEeeCC--ccccccc---cCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 114 GLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL--KEFSGFK---SNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~--~~g~~l~tg~~dg~i~vwd~~--~~~~~~~---~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
.+..++..|..-|.|+. |||.++|+.+.||+|.+||-. +.+..+. +|.+.|.+|.|+||++.++|++.|.+++
T Consensus 181 KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 181 KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence 46677888999999876 569999999999999999843 4444554 8999999999999999999999999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEe-----------ec-ceeeEeeccCCeeEEEEcCCCCEEEEEe
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR-----------RN-RSVLKIRHYDAVSCLSLNAEQGLLYSGS 254 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~s 254 (473)
|||+.+.++......... .....+........++.+. .. ......+|...|+++..++++++|++|+
T Consensus 261 IWdVs~~slv~t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 261 IWDVSTNSLVSTWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS 339 (603)
T ss_pred EEEeeccceEEEeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec
Confidence 999999987776665543 1122222222222222211 11 1234558999999999999999999999
Q ss_pred CCCCEEEEEcCCCeeeEEe-ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcce------------------e
Q 012007 255 WDKTLKVWRISDCKCLESI-NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKH------------------C 315 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~-~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------------------~ 315 (473)
.||.|.-|+..++..-+.. +.|...|.+++....+.+++++.|.++++.++...+-.... .
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~ 419 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGT 419 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCE
Confidence 9999999999988776554 67999999999988889999999999999977432211000 0
Q ss_pred e-------eeeecc--------CCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc-cccceeecCcceEEEEE--ecC
Q 012007 316 L-------AQVLLK--------HENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL-SHGGVLRGHKMAVLCLA--AAG 377 (473)
Q Consensus 316 ~-------~~~~~~--------~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~--~~~ 377 (473)
. +..+.. -.....+++++|++..+++|+.||.|+||.+.... .....+..|..++++++ ||+
T Consensus 420 avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~ 499 (603)
T KOG0318|consen 420 AVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG 499 (603)
T ss_pred EEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC
Confidence 0 001111 12345789999999999999999999999998754 33346677888887665 679
Q ss_pred CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 378 NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 378 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
.|||+|...+.+.+||+.+... ....+.-|+..|.+++|+|+.. ++|||+.|-.|.||++..+..
T Consensus 500 ~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~-------------~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 500 AYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNK-------------LVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred cEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCce-------------EEEeccccceEEEEEccChhh
Confidence 9999999999999999998432 4455667999999999999998 899999999999999988765
Q ss_pred C
Q 012007 458 D 458 (473)
Q Consensus 458 ~ 458 (473)
.
T Consensus 565 ~ 565 (603)
T KOG0318|consen 565 H 565 (603)
T ss_pred h
Confidence 4
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-37 Score=264.67 Aligned_cols=282 Identities=22% Similarity=0.356 Sum_probs=246.2
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
...+.+|...|+.+-+. -.+++++++|++|++||.. +....+++|...|..|+|+..|++|++++.|=.+++||.+
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 45566788888887665 4578888899999999965 5678899999999999999999999999999889999987
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
+..... ....+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.
T Consensus 181 ~~~~c~-------------------------------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~ 229 (406)
T KOG0295|consen 181 TFFRCI-------------------------------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK 229 (406)
T ss_pred HHHHHH-------------------------------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE
Confidence 632111 1122589999999999999999999999999999999999999
Q ss_pred EeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC---------------
Q 012007 272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE--------------- 335 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--------------- 335 (473)
++.+|...|..+....|| ++++++.|.+|++|-+... .....+..|+-+|.+++|-|.
T Consensus 230 t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 230 TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNG 303 (406)
T ss_pred eccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc------hhhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence 999999999999999999 7889999999999988632 234667889999999998653
Q ss_pred CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCce
Q 012007 336 SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPV 413 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V 413 (473)
+.++.+++.|++|++||+.++..+ ..+.+|...|..+++. |+||+++.+|+++++||+++ .+|+..+..|..-|
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL-~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~---~~cmk~~~ah~hfv 379 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCL-FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN---LQCMKTLEAHEHFV 379 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEE-EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc---ceeeeccCCCccee
Confidence 258999999999999999997554 6788999999777655 99999999999999999999 78999999999999
Q ss_pred eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 414 KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
++++|+.+.. +++||+-|.++++|.
T Consensus 380 t~lDfh~~~p-------------~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 380 TSLDFHKTAP-------------YVVTGSVDQTVKVWE 404 (406)
T ss_pred EEEecCCCCc-------------eEEeccccceeeeee
Confidence 9999999988 899999999999996
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=247.50 Aligned_cols=270 Identities=20% Similarity=0.362 Sum_probs=232.9
Q ss_pred ccceeeeeeecccEEEEE--ecCCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 113 NGLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~--~~g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
+...+++...++.|..+. +++++||+|+. ..||+||+. ..+..+.+|++.|+++.|..+|++++||+.||+++
T Consensus 30 G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~k 108 (311)
T KOG0315|consen 30 GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVK 108 (311)
T ss_pred CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEE
Confidence 445677777778887655 67889999986 589999965 46889999999999999999999999999999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
|||+....+.... .|..+|+++..+|+...|++|..+|.|++||+.+
T Consensus 109 IWdlR~~~~qR~~---------------------------------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 109 IWDLRSLSCQRNY---------------------------------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred EEeccCcccchhc---------------------------------cCCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence 9999875443333 2889999999999999999999999999999998
Q ss_pred CeeeEEe-ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC
Q 012007 267 CKCLESI-NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 267 ~~~~~~~-~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
..+.+.+ ......|.++...+++ +++.+...|...+|++-.........++..+..|+.-+..+.++|++++|++++.
T Consensus 156 ~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 156 NSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred CccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 8776665 3456789999999999 8888899999999999876655667777889999999999999999999999999
Q ss_pred CCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe
Q 012007 345 DGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE 419 (473)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~ 419 (473)
|.+++||+.++.......+.+|...+ ..|+.+|.||++|+.|+.+++|++.. .+.+..+.+|..+..|++..
T Consensus 236 dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~---~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 236 DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA---GKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc---CceeeecCCcccccEEEEee
Confidence 99999999998766667888998777 45666799999999999999999998 57788999998888888764
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.4e-37 Score=289.86 Aligned_cols=273 Identities=24% Similarity=0.380 Sum_probs=226.4
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEE-eecceeeEeeccCCee
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEV-RRNRSVLKIRHYDAVS 239 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~ 239 (473)
...++|..|++|+.+||.|..|..|++|.+...+.........+.... ....... ....+. .........+|.++|.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d-~~sad~~-~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNID-TESADVD-VDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhcccc-ccccchh-hhhccccCCceeEEeecCCCcee
Confidence 456999999999999999999999999999864432222111111110 0000001 112211 1222334778999999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
.+.|+|+.++|+++++|++|++|.+.+..++-.+++|..+|+++.|+|.| ++++++.|++.++|... ...+..
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d------~~~PlR 529 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD------HNKPLR 529 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc------cCCchh
Confidence 99999999999999999999999999999999999999999999999999 89999999999999986 234567
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCC
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.+.+|.+.|.|+.|+|+..|+++|+.|.+|++||..++.. ...+.||..+|.++ +|+|++|++|+.||.|.+||+.+
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 8899999999999999999999999999999999998765 46889999998665 56799999999999999999999
Q ss_pred CCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 397 SGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 397 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
...+..+.+|++.|.+|.|+.++. +||+||.|.+|++||+......
T Consensus 609 ---~~~v~~l~~Ht~ti~SlsFS~dg~-------------vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 609 ---GSLVKQLKGHTGTIYSLSFSRDGN-------------VLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred ---CcchhhhhcccCceeEEEEecCCC-------------EEEecCCCCeEEEEEchhhccc
Confidence 578889999999999999999999 9999999999999999876544
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-35 Score=261.65 Aligned_cols=274 Identities=20% Similarity=0.313 Sum_probs=238.0
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
...|++++|+ |.+||+|+.||.++||+.. ..+.++..|+++|.++.|+.+|+||++++.||++.+||..++....++
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 3568999997 9999999999999999965 667788899999999999999999999999999999999988876666
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCc
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA 279 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 279 (473)
.. |..+-..+.|-. ...+++++.|+.|+|+.+....++.++.+|.+.
T Consensus 315 ~~--------------------------------~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~ 361 (524)
T KOG0273|consen 315 EF--------------------------------HSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE 361 (524)
T ss_pred ee--------------------------------ccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCc
Confidence 54 555556788864 457899999999999999999999999999999
Q ss_pred eeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC---------CEEEEeCCCCcEE
Q 012007 280 INSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES---------AVVYCGSSDGLVN 349 (473)
Q Consensus 280 v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---------~~l~~~~~dg~i~ 349 (473)
|+++.|.|.+ +|++++.|++++||.... ......+..|...|..+.|+|.| ..+++++.|++|+
T Consensus 362 V~alk~n~tg~LLaS~SdD~TlkiWs~~~------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~ 435 (524)
T KOG0273|consen 362 VNALKWNPTGSLLASCSDDGTLKIWSMGQ------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVK 435 (524)
T ss_pred eEEEEECCCCceEEEecCCCeeEeeecCC------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEE
Confidence 9999999998 899999999999999752 22356788999999999999965 4789999999999
Q ss_pred EEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcc
Q 012007 350 FWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 427 (473)
+||+..+... ..+..|..+|.++++ +|+|+|+|+.||.|.+|+..+ .+.++.+.+ .+.|..++|+.++.
T Consensus 436 lwdv~~gv~i-~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~---~~l~~s~~~-~~~Ifel~Wn~~G~---- 506 (524)
T KOG0273|consen 436 LWDVESGVPI-HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT---GKLVKSYQG-TGGIFELCWNAAGD---- 506 (524)
T ss_pred EEEccCCcee-EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc---hheeEeecC-CCeEEEEEEcCCCC----
Confidence 9999987554 567789999977765 599999999999999999998 577777766 56699999999997
Q ss_pred cccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.|..+-.|+.+++-|+.
T Consensus 507 ---------kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 507 ---------KLGACASDGSVCVLDLR 523 (524)
T ss_pred ---------EEEEEecCCCceEEEec
Confidence 78888889999999874
No 21
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=277.30 Aligned_cols=329 Identities=21% Similarity=0.367 Sum_probs=258.7
Q ss_pred cceeeeeeecccEEEEEecCC----EEEEeeCCCcEEEeeCC---ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 114 GLIGSIVRKEGHIYSLAASGD----LLYTGSDSKNIRVWKNL---KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g~----~l~tg~~dg~i~vwd~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
.....|.||.|.|.++.|.+. +|++|..|++|++||.. .++..+..|...|++++|++|+..+++++.|..+.
T Consensus 138 ~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~ 217 (775)
T KOG0319|consen 138 YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVII 217 (775)
T ss_pred EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEE
Confidence 457789999999999998744 68999999999999976 34678889999999999999999999999999999
Q ss_pred EEeCCCCCeeeEEe------------------------ecc-------------------cc---ccce---------eE
Q 012007 187 IWKVSRKNASVHKR------------------------VGS-------------------LP---TFKD---------YV 211 (473)
Q Consensus 187 vwd~~~~~~~~~~~------------------------~~~-------------------~~---~~~~---------~~ 211 (473)
|||+...+...... .+. .+ .... ++
T Consensus 218 vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l 297 (775)
T KOG0319|consen 218 VWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLL 297 (775)
T ss_pred EeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceE
Confidence 99984432111000 000 00 0000 00
Q ss_pred --------------------------------------------eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC
Q 012007 212 --------------------------------------------KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ 247 (473)
Q Consensus 212 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 247 (473)
.+......+.........+..+|.+.|.++....+|
T Consensus 298 ~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g 377 (775)
T KOG0319|consen 298 LVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG 377 (775)
T ss_pred EEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC
Confidence 000000011122222334556899999999966778
Q ss_pred CEEEEEeCCCCEEEEEcCCCe----eeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeee----
Q 012007 248 GLLYSGSWDKTLKVWRISDCK----CLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLA---- 317 (473)
Q Consensus 248 ~~l~s~s~dg~v~vwd~~~~~----~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~---- 317 (473)
.+|++|+.|.++++|.++++. ++....+|...|.+++++..+ +|++++.|++|++|++..... ......
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~-~~~~~~~~~~ 456 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE-TAFPIVLTCR 456 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc-ccccceehhh
Confidence 899999999999999885443 345567899999999997766 899999999999999975222 111222
Q ss_pred eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecC
Q 012007 318 QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~ 395 (473)
.....|...|++++++|+..++++|+.|.+.+||+++. ..+...+.||...+.|++|. .+.+++++.|++|+||.+.
T Consensus 457 ~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 457 YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred HHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence 24568999999999999999999999999999999994 56678999999999888876 5699999999999999999
Q ss_pred CCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 396 ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 396 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+ ..|+.++.||...|..+.|-.++. .|+|++.||-|++|++.+......
T Consensus 536 ~---fSClkT~eGH~~aVlra~F~~~~~-------------qliS~~adGliKlWnikt~eC~~t 584 (775)
T KOG0319|consen 536 T---FSCLKTFEGHTSAVLRASFIRNGK-------------QLISAGADGLIKLWNIKTNECEMT 584 (775)
T ss_pred c---ceeeeeecCccceeEeeeeeeCCc-------------EEEeccCCCcEEEEeccchhhhhh
Confidence 9 899999999999999999999998 899999999999999998765544
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-35 Score=245.78 Aligned_cols=252 Identities=22% Similarity=0.355 Sum_probs=209.4
Q ss_pred ccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 154 FSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
...+++|++.|+.++..+. -..|++++.|.++.+|++...+...-. ....+.
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~---------------------------~~r~~~ 60 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV---------------------------PVRRLT 60 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc---------------------------eeeeee
Confidence 3468899999999999876 468899999999999999876322100 112233
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
||...|..+..+++|++.+++++|+++++||+.+++..+.|.+|...|.++++++++ ++++|+.|.+|++|++..
T Consensus 61 GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g---- 136 (315)
T KOG0279|consen 61 GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG---- 136 (315)
T ss_pred ccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc----
Confidence 699999999999999999999999999999999999999999999999999999998 999999999999999852
Q ss_pred cceeeeeeec-cCCccEEEEEEccC--CCEEEEeCCCCcEEEEecCCcccccceeecCcceEE--EEEecCCEEEEEeCC
Q 012007 312 TKHCLAQVLL-KHENAVTALAVNQE--SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL--CLAAAGNLVFSGSAD 386 (473)
Q Consensus 312 ~~~~~~~~~~-~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~~~d 386 (473)
.+...... .+...|.|+.|+|+ ..+|++++.|++|++||+++. ++...+.+|...+. .++|||.+.++|+.|
T Consensus 137 --~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkd 213 (315)
T KOG0279|consen 137 --VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKD 213 (315)
T ss_pred --cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCC
Confidence 22222222 23889999999997 689999999999999999974 55567788888775 456899999999999
Q ss_pred CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
|.+.+||++. .+.+..+ +|...|.+++|+|+.. .++...+-.|+|||+.....
T Consensus 214 g~~~LwdL~~---~k~lysl-~a~~~v~sl~fspnry--------------wL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 214 GEAMLWDLNE---GKNLYSL-EAFDIVNSLCFSPNRY--------------WLCAATATSIKIWDLESKAV 266 (315)
T ss_pred ceEEEEEccC---CceeEec-cCCCeEeeEEecCCce--------------eEeeccCCceEEEeccchhh
Confidence 9999999998 4556665 5788999999999974 55555666799999987654
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.3e-35 Score=284.50 Aligned_cols=285 Identities=25% Similarity=0.466 Sum_probs=238.1
Q ss_pred eeeeeee-cccEEEE--EecCCEEEEeeCCCcEEEeeCC--c--cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 116 IGSIVRK-EGHIYSL--AASGDLLYTGSDSKNIRVWKNL--K--EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 116 ~~~l~~h-~~~V~~~--~~~g~~l~tg~~dg~i~vwd~~--~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
...+.+| ...|.++ +++|+++++++.|+.+++|+.. + ....+.+|...|.+++|+|+++++++|+.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 4445454 4556665 4569999999999999999863 3 455668899999999999999999999999999999
Q ss_pred eCCCC-CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 189 KVSRK-NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 189 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
|+... ....... +|...|++++|+|+++++++|+.|++|+|||++++
T Consensus 231 d~~~~~~~~~~l~--------------------------------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 231 DLKDDGRNLKTLK--------------------------------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred eccCCCeEEEEec--------------------------------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 99433 3322222 59999999999999999999999999999999999
Q ss_pred eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc--cEEEEEEccCCCEEEEeCC
Q 012007 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN--AVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~ 344 (473)
+++..+.+|.+.|+++++++++ +|++++.|+.|++||+..+... ....+..+.. .++++.|+|++.++++++.
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 9999999999999999999998 8889999999999999854321 2334444444 5999999999999999999
Q ss_pred CCcEEEEecCCcccccceeecCcceEEEE-----EecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC-CCceeEEEE
Q 012007 345 DGLVNFWECEKHLSHGGVLRGHKMAVLCL-----AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH-TGPVKCLAV 418 (473)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~ 418 (473)
|+.+++||+...... ....+|...+.|+ ...+.++++|+.|+.|++|++.+ ...+..+.+| ...|..+.+
T Consensus 355 d~~~~~w~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s---~~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKSV-GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS---GGILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred CCeEEEEEccCCcce-eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc---cchhhhhcCCCCCceecccc
Confidence 999999999975444 4566666654443 34699999999999999999998 5778888999 899999999
Q ss_pred ecCCCCCcccccCCCccEEEEEee--CCCcEEEEEcC
Q 012007 419 EEDRDHDHEYHQKGDQRWTVYSGS--LDKSVKVWRVS 453 (473)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~s~s--~Dg~v~iW~i~ 453 (473)
++... ++++++ .|+.|++|...
T Consensus 431 ~~~~~-------------~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 431 HPTEN-------------LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCcC-------------eeeecCcCCCceEEEecCC
Confidence 99988 888888 79999999864
No 24
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-35 Score=238.75 Aligned_cols=278 Identities=19% Similarity=0.352 Sum_probs=236.8
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
...|..|++.|.++.++ |+|.++++.|.+|++|+.. ..++++.+|...|..++.+.|+..+++|+.|..|.+||++
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 45677899999999886 9999999999999999976 4678999999999999999999999999999999999999
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC--Cee
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD--CKC 269 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~--~~~ 269 (473)
+++....+. +|...|+.+.|+.+...+++|+.|.++++||.++ .++
T Consensus 90 TGkv~Rr~r--------------------------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP 137 (307)
T KOG0316|consen 90 TGKVDRRFR--------------------------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP 137 (307)
T ss_pred cCeeeeecc--------------------------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc
Confidence 998776665 5999999999999999999999999999999975 577
Q ss_pred eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
++.+....+.|.++... +..|++|+.||+++.||++.+.. .......+|++++|+++++.+++++.|++++
T Consensus 138 iQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l--------~sDy~g~pit~vs~s~d~nc~La~~l~stlr 208 (307)
T KOG0316|consen 138 IQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTL--------SSDYFGHPITSVSFSKDGNCSLASSLDSTLR 208 (307)
T ss_pred cchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeeccee--------ehhhcCCcceeEEecCCCCEEEEeeccceee
Confidence 88888888999999875 45799999999999999985432 2223456899999999999999999999999
Q ss_pred EEecCCcccccceeecCcceEE----EEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCc-eeEEEEecCCCC
Q 012007 350 FWECEKHLSHGGVLRGHKMAVL----CLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGP-VKCLAVEEDRDH 424 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~ 424 (473)
+.|-.+++.+ ..+++|...-. |+.-....+++|++||.|++||+.. ...+..+..|... |++++++|...
T Consensus 209 LlDk~tGklL-~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd---~~~~sk~~~~~~v~v~dl~~hp~~~- 283 (307)
T KOG0316|consen 209 LLDKETGKLL-KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD---ETQISKLSVVSTVIVTDLSCHPTMD- 283 (307)
T ss_pred ecccchhHHH-HHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc---ceeeeeeccCCceeEEeeecccCcc-
Confidence 9999987554 57788887653 4445578999999999999999998 5677777777777 89999999877
Q ss_pred CcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 425 DHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 425 ~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
-|+++. ++.+..|.-
T Consensus 284 ------------~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 284 ------------DFITAT-GHGDLFWYQ 298 (307)
T ss_pred ------------ceeEec-CCceeceee
Confidence 355554 345677753
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=249.14 Aligned_cols=291 Identities=18% Similarity=0.266 Sum_probs=239.9
Q ss_pred ccceeeeeeecccEEEEE--ecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 113 NGLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~--~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
..-+.++..|.+.|++++ |+.+++|||+.|..-.||+.. .....+.+|+..|+++.|+.+|.+||||+.+|.|+||
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 344678899999999987 457899999999999999865 5567788999999999999999999999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
+..++....... .....|.-+.|+|.+..|++|+.||.|.+|.+.++.
T Consensus 134 ~~stg~~~~~~~--------------------------------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 134 KVSTGGEQWKLD--------------------------------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred EcccCceEEEee--------------------------------cccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence 999887544332 144567789999999999999999999999999988
Q ss_pred eeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCccee--------------------------------
Q 012007 269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHC-------------------------------- 315 (473)
Q Consensus 269 ~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~-------------------------------- 315 (473)
..+.+.+|..++++=.|.|+| .++++..||+|++||+.++.......
T Consensus 182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 889999999999999999998 89999999999999987543210000
Q ss_pred -----eeee--------eccCCccEEEEEEc---cCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecC-C
Q 012007 316 -----LAQV--------LLKHENAVTALAVN---QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAG-N 378 (473)
Q Consensus 316 -----~~~~--------~~~~~~~v~~l~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~ 378 (473)
.+.. ...+...+.++.+. ..-.+.|+|+.||+|.|||+..... +..-.|...|+.+.|.+ .
T Consensus 262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~--R~~c~he~~V~~l~w~~t~ 339 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL--RHICEHEDGVTKLKWLNTD 339 (399)
T ss_pred cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh--heeccCCCceEEEEEcCcc
Confidence 0000 00122223333333 3446789999999999999986432 34456888899999887 8
Q ss_pred EEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 379 LVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 379 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+|++++.||.|+.||.++ ++++..+.||...|.+++++|+.+ +++|+|.|++.+|++++
T Consensus 340 ~l~t~c~~g~v~~wDaRt---G~l~~~y~GH~~~Il~f~ls~~~~-------------~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 340 YLLTACANGKVRQWDART---GQLKFTYTGHQMGILDFALSPQKR-------------LVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeeccCceEEeeeccc---cceEEEEecCchheeEEEEcCCCc-------------EEEEecCCCeEEEEecC
Confidence 999999999999999999 689999999999999999999998 89999999999999875
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-34 Score=268.01 Aligned_cols=328 Identities=23% Similarity=0.376 Sum_probs=252.4
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--cc--ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KE--FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
.+.++..+|-..|.++.|+ .++|++|+.|-+++||... +. ...+.+|+..|-+.-|..+...|++.+.||.+.+
T Consensus 136 vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~ 215 (893)
T KOG0291|consen 136 VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFV 215 (893)
T ss_pred eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEE
Confidence 4567788899999999985 7799999999999999765 33 4467899999999999999999999999999999
Q ss_pred EeCCCCCeeeEEe---------------------------e--cccc-ccceeEeecCCCcc-------------eEEEe
Q 012007 188 WKVSRKNASVHKR---------------------------V--GSLP-TFKDYVKSSVNPKN-------------YVEVR 224 (473)
Q Consensus 188 wd~~~~~~~~~~~---------------------------~--~~~~-~~~~~~~~~~~~~~-------------~~~~~ 224 (473)
|............ . ..+. .......+...+.. +.++.
T Consensus 216 W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP 295 (893)
T KOG0291|consen 216 WTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP 295 (893)
T ss_pred EEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence 9887221100000 0 0000 00001111111110 01111
Q ss_pred ecceeeEee-ccCCeeEEEEcCCCCEEEEEeCC-CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEE
Q 012007 225 RNRSVLKIR-HYDAVSCLSLNAEQGLLYSGSWD-KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVK 301 (473)
Q Consensus 225 ~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~ 301 (473)
....+.... ....|..++|+..|++|+.|+.. |.+.||+..+...+...++|...+++++++||| ++++|+.||.|+
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 111111111 23578889999999999998754 799999999998899999999999999999998 899999999999
Q ss_pred EEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec--CCE
Q 012007 302 VWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNL 379 (473)
Q Consensus 302 vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 379 (473)
|||.. ... ...++..|...|+.+.|+..++.+++.+.||+|+.||+..................|++.| |.+
T Consensus 376 vWn~~-----Sgf-C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 376 VWNTQ-----SGF-CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred EEecc-----Cce-EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence 99986 233 4577889999999999999999999999999999999987666655554555555666655 999
Q ss_pred EEEEeCCC-cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 380 VFSGSADR-NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 380 l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+++|+.|. .|.+|++++ ++.+..+.||.++|.+++|+|++. .|+++|.|.+||+|++-.....
T Consensus 450 V~AG~~d~F~IfvWS~qT---GqllDiLsGHEgPVs~l~f~~~~~-------------~LaS~SWDkTVRiW~if~s~~~ 513 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQT---GQLLDILSGHEGPVSGLSFSPDGS-------------LLASGSWDKTVRIWDIFSSSGT 513 (893)
T ss_pred EEeeccceEEEEEEEeec---CeeeehhcCCCCcceeeEEccccC-------------eEEeccccceEEEEEeeccCce
Confidence 99999886 599999999 688999999999999999999999 8999999999999999876544
Q ss_pred ccCCC
Q 012007 459 LKGLH 463 (473)
Q Consensus 459 ~~~~~ 463 (473)
.+.+.
T Consensus 514 vEtl~ 518 (893)
T KOG0291|consen 514 VETLE 518 (893)
T ss_pred eeeEe
Confidence 44443
No 27
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3e-35 Score=254.78 Aligned_cols=282 Identities=23% Similarity=0.381 Sum_probs=236.2
Q ss_pred ecccEEEEEecCCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCeee
Q 012007 122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGD---SNKIFTGHQDGKIRIWKVSRKNASV 197 (473)
Q Consensus 122 h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~---~~~l~s~~~dg~i~vwd~~~~~~~~ 197 (473)
|.+.|.++.-.+++|++|++||.++|||.. +....+.+|.++|.+++|.-. ...|++++.|.++++|.++.+....
T Consensus 104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~ 183 (423)
T KOG0313|consen 104 HDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV 183 (423)
T ss_pred chhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh
Confidence 677787887779999999999999999976 677889999999998888433 2469999999999999998765432
Q ss_pred EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC------------
Q 012007 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS------------ 265 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~------------ 265 (473)
.... ...||...|.++...+++..+++|++|..|.||+..
T Consensus 184 ~~~~----------------------------~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~ 235 (423)
T KOG0313|consen 184 KALK----------------------------VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSN 235 (423)
T ss_pred hHHh----------------------------HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccch
Confidence 2111 111699999999999999999999999999999932
Q ss_pred -------------CCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEE
Q 012007 266 -------------DCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV 332 (473)
Q Consensus 266 -------------~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 332 (473)
++.++..+.+|..+|.++.|.+.+.+++++.|.+|+.||+.+++.. ........++++.+
T Consensus 236 ~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~-------~~~~~~ksl~~i~~ 308 (423)
T KOG0313|consen 236 RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLK-------STLTTNKSLNCISY 308 (423)
T ss_pred hhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccce-------eeeecCcceeEeec
Confidence 1235667889999999999999889999999999999999865531 12223567899999
Q ss_pred ccCCCEEEEeCCCCcEEEEecCCc--ccccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEec
Q 012007 333 NQESAVVYCGSSDGLVNFWECEKH--LSHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 333 ~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 407 (473)
+|..++|++|+.|..|++||.+++ ......+.+|...|.++.++ ..+|++|+.|+++++||+++. ..++..+.
T Consensus 309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~--k~plydI~ 386 (423)
T KOG0313|consen 309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST--KAPLYDIA 386 (423)
T ss_pred ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC--CCcceeec
Confidence 999999999999999999999863 45556788999999888765 568999999999999999984 34899999
Q ss_pred CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 408 ~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+|...|.++.|.... ++++||.|.+|+|+.-..
T Consensus 387 ~h~DKvl~vdW~~~~--------------~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 387 GHNDKVLSVDWNEGG--------------LIVSGGADNKLRIFKGSP 419 (423)
T ss_pred cCCceEEEEeccCCc--------------eEEeccCcceEEEecccc
Confidence 999999999999876 699999999999997543
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.9e-34 Score=260.16 Aligned_cols=281 Identities=31% Similarity=0.536 Sum_probs=236.4
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
+.++.+|.+.|.++.++ +++|++++.||.|++|+.. +....+..|...+..+.|++++++|++++.||.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45677899999998875 6899999999999999865 3456677899999999999999999999999999999998
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
.++...... .|...|.++.|++++.++++++.|+.|.+||+.+++.+.
T Consensus 82 ~~~~~~~~~--------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 129 (289)
T cd00200 82 TGECVRTLT--------------------------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT 129 (289)
T ss_pred cccceEEEe--------------------------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE
Confidence 764332221 377889999999998899988889999999999999999
Q ss_pred EeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
.+..|...+.++.+++++ ++++++.|+.|++||++... ....+..|...+.++.|+|+++.+++++.|+.|++
T Consensus 130 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 203 (289)
T cd00200 130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203 (289)
T ss_pred EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc------cceeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence 999999999999999977 66666669999999996322 23445578889999999999999999999999999
Q ss_pred EecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 351 WECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
||++..... ..+..|...+.++.+ ++.++++++.||.|++|++.. ...+..+..|...|.+++|++++.
T Consensus 204 ~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~----- 274 (289)
T cd00200 204 WDLSTGKCL-GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT---GECVQTLSGHTNSVTSLAWSPDGK----- 274 (289)
T ss_pred EECCCCcee-cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC---ceeEEEccccCCcEEEEEECCCCC-----
Confidence 999864433 344467767766665 467888888899999999987 466777778999999999999987
Q ss_pred ccCCCccEEEEEeeCCCcEEEEE
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+|++++.||.|++|+
T Consensus 275 --------~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 --------RLASGSADGTIRIWD 289 (289)
T ss_pred --------EEEEecCCCeEEecC
Confidence 899999999999996
No 29
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.8e-34 Score=240.68 Aligned_cols=256 Identities=19% Similarity=0.266 Sum_probs=221.2
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
.+.+++|.+.|.++.|++|.++|++++.||.+.|||.-+.+.......
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-------------------------------- 95 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-------------------------------- 95 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--------------------------------
Confidence 368999999999999999999999999999999999887765444332
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC------eeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC------KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRREL 307 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~ 307 (473)
....|..++|+|.|+++++|+.|+...||++.+. +..+.+.+|.+.+.|+.|.+++.|++++.|.+..+||++.
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIET 175 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEccc
Confidence 4568999999999999999999999999999855 4556789999999999999999999999999999999974
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEe
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGS 384 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~ 384 (473)
+ .....+.+|.+.|.++.++| +++.+++|+.|+..++||++.+ ...+.+.+|...|.++. |+|.-+++|+
T Consensus 176 g------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 176 G------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred c------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecC
Confidence 3 34677889999999999999 9999999999999999999987 55678899998886654 6899999999
Q ss_pred CCCcEEEEecCCCCceeEEEEec--CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLT--GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
.|++.++||++.. +.+..+. .-..+|++++|+..++ +|++|..|..+.+||.-.++......
T Consensus 249 DD~tcRlyDlRaD---~~~a~ys~~~~~~gitSv~FS~SGR-------------lLfagy~d~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 249 DDATCRLYDLRAD---QELAVYSHDSIICGITSVAFSKSGR-------------LLFAGYDDFTCNVWDTLKGERVGVLA 312 (343)
T ss_pred CCceeEEEeecCC---cEEeeeccCcccCCceeEEEccccc-------------EEEeeecCCceeEeeccccceEEEee
Confidence 9999999999983 4444443 3456899999999999 99999999999999998876654443
Q ss_pred CC
Q 012007 463 HS 464 (473)
Q Consensus 463 ~~ 464 (473)
.+
T Consensus 313 GH 314 (343)
T KOG0286|consen 313 GH 314 (343)
T ss_pred cc
Confidence 33
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-34 Score=273.85 Aligned_cols=259 Identities=23% Similarity=0.357 Sum_probs=219.9
Q ss_pred cEEEE--EecCCEEEEeeCCCcEEEeeCCc---------------------------------cccccccCcccEEEEEE
Q 012007 125 HIYSL--AASGDLLYTGSDSKNIRVWKNLK---------------------------------EFSGFKSNSGLVKAIII 169 (473)
Q Consensus 125 ~V~~~--~~~g~~l~tg~~dg~i~vwd~~~---------------------------------~~~~~~~h~~~V~~l~~ 169 (473)
.+.|. +.++.+||.|-.|..|++|.+.. ....+.+|.++|..+.|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 34554 45678999999999999996431 01236789999999999
Q ss_pred eCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCE
Q 012007 170 SGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL 249 (473)
Q Consensus 170 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 249 (473)
+|+.++|++|+.|++||+|.+.+........ +|..+|+++.|+|.|-+
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~--------------------------------GH~~PVwdV~F~P~GyY 507 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK--------------------------------GHLAPVWDVQFAPRGYY 507 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEEec--------------------------------CCCcceeeEEecCCceE
Confidence 9999999999999999999999887655444 59999999999999999
Q ss_pred EEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE
Q 012007 250 LYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT 328 (473)
Q Consensus 250 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 328 (473)
+|+|+.|++-++|.....++++.+.+|...|.|+.|+|+. ++++|+.|.++++||+..+. .+..+.+|..+|+
T Consensus 508 Fatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~------~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN------SVRIFTGHKGPVT 581 (707)
T ss_pred EEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc------EEEEecCCCCceE
Confidence 9999999999999999999999999999999999999997 99999999999999997443 4778899999999
Q ss_pred EEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCc-------
Q 012007 329 ALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGA------- 399 (473)
Q Consensus 329 ~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~------- 399 (473)
+++|+|+|++|++|+.||.|.+||+..+..+ ..+.+|.+.+.+++ .+|..||+|+.|.+|++||+.....
T Consensus 582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v-~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~ 660 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGLIKIWDLANGSLV-KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHI 660 (707)
T ss_pred EEEEcCCCceEeecccCCcEEEEEcCCCcch-hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccc
Confidence 9999999999999999999999999986554 56778998887665 4699999999999999999864211
Q ss_pred --------------eeEEEEecCCCCceeEEEEecCC
Q 012007 400 --------------HSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 400 --------------~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
..++..+.....+|.+|.|....
T Consensus 661 ~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN 697 (707)
T KOG0263|consen 661 STSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN 697 (707)
T ss_pred ccccccccccCCCCcceeeeeeecCceEEEEEEeccc
Confidence 12445555556677778777654
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.2e-33 Score=290.56 Aligned_cols=282 Identities=15% Similarity=0.268 Sum_probs=223.7
Q ss_pred eeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc----------ccccccCcccEEEEEEeCC-CCEEEEEeCCCe
Q 012007 118 SIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE----------FSGFKSNSGLVKAIIISGD-SNKIFTGHQDGK 184 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~----------~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~ 184 (473)
.+..|.+.|.+++|+ |++||+|+.|+.|+||+.... ...+ .+...|.+++|++. +.+|++++.||.
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCe
Confidence 456689999988875 889999999999999986421 1112 23467999999874 789999999999
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEE
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd 263 (473)
|++||+.+++...... +|.+.|++++|+| ++.+|++|+.|++|++||
T Consensus 557 v~lWd~~~~~~~~~~~--------------------------------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 557 VQVWDVARSQLVTEMK--------------------------------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWS 604 (793)
T ss_pred EEEEECCCCeEEEEec--------------------------------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence 9999998765433221 4999999999997 789999999999999999
Q ss_pred cCCCeeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE
Q 012007 264 ISDCKCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 264 ~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
++++..+..+..+ ..+.++.|.+ ++ +|++|+.||.|++||++.. ......+.+|...|.++.|. ++.+|++
T Consensus 605 ~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 605 INQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred CCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCCEEEEEEe-CCCEEEE
Confidence 9999998888754 5788999854 44 8999999999999999732 22334567899999999997 6789999
Q ss_pred eCCCCcEEEEecCCcc-----cccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeE--------E--E
Q 012007 342 GSSDGLVNFWECEKHL-----SHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSC--------L--A 404 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~--~ 404 (473)
++.|+.|++||++... .....+.+|...+ .++++++.+|++|+.|+.|++|+......... + .
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~ 757 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL 757 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc
Confidence 9999999999997431 2334667887765 44566799999999999999999765311100 0 0
Q ss_pred EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 405 VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 405 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
....|...|.+++|++++. +|++|+.||.|+||++
T Consensus 758 ~~~~~~~~V~~v~ws~~~~-------------~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 758 EVDDASQFISSVCWRGQSS-------------TLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCCCcEEEEEEEcCCCC-------------eEEEecCCCcEEEEec
Confidence 1234566799999999998 8999999999999996
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=270.60 Aligned_cols=290 Identities=24% Similarity=0.347 Sum_probs=246.2
Q ss_pred cceeeeeeecccEEEEEecC---CEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 114 GLIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g---~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.++..+.|..+.|..+.+=| ++||.++..+.+|+|+... ....+.+|+..|.++....+|-+|+||+.|.++++|.
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWR 393 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEE
Confidence 45667888899999999765 7999999999999998663 3347889999999999767788999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCe
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
++.+..... .+ ..-.+|...|.+++++.. ..+|++++.|.++++|++...+
T Consensus 394 ~~~~~~~~~-~~---------------------------a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~ 445 (775)
T KOG0319|consen 394 LNNNCSKSL-CV---------------------------AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSK 445 (775)
T ss_pred ecCCcchhh-hh---------------------------hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcc
Confidence 844332111 10 112259999999999774 4689999999999999997622
Q ss_pred e-----e----EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE
Q 012007 269 C-----L----ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV 338 (473)
Q Consensus 269 ~-----~----~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 338 (473)
. + .....|+..|+|++++|+. +++||+.|.+.+||+++ ...+...+.+|...|.++.|+|..+.
T Consensus 446 ~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le------~~~l~~vLsGH~RGvw~V~Fs~~dq~ 519 (775)
T KOG0319|consen 446 ETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE------QLRLLGVLSGHTRGVWCVSFSKNDQL 519 (775)
T ss_pred cccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc------CceEEEEeeCCccceEEEEeccccce
Confidence 1 1 1234799999999999987 89999999999999996 44467889999999999999999999
Q ss_pred EEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEE
Q 012007 339 VYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCL 416 (473)
Q Consensus 339 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l 416 (473)
+++++.|++|+||.+.+. ...+.+.||...|...+| +|..|++++.||-|++|++.+ ..|+..+.+|.+.|.++
T Consensus 520 laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt---~eC~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 520 LATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT---NECEMTLDAHNDRVWAL 595 (775)
T ss_pred eEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc---hhhhhhhhhccceeEEE
Confidence 999999999999999985 555788999999987775 699999999999999999999 79999999999999999
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+.++... +++||+.||.|.+|.=-+
T Consensus 596 ~~~~~~~-------------~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 596 SVSPLLD-------------MFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eecCccc-------------eeEecCCCeEEEEeecCc
Confidence 9999988 899999999999997443
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-34 Score=247.28 Aligned_cols=249 Identities=24% Similarity=0.402 Sum_probs=221.6
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+....+.+|.+.|.|+++.|.+.++++|+.|++|+|||+.+++......
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt------------------------------- 190 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT------------------------------- 190 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec-------------------------------
Confidence 4456788999999999999999999999999999999999997654433
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCC
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~ 310 (473)
+|...|..+++++-..||++++.|+.|+.||++..+.++.+.+|-..|.|+..+|.- .|++|+.|..+++||+++.
T Consensus 191 -Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-- 267 (460)
T KOG0285|consen 191 -GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-- 267 (460)
T ss_pred -chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc--
Confidence 699999999999999999999999999999999999999999999999999999875 9999999999999999843
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCc
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRN 388 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~ 388 (473)
..+..+.+|..+|..+.+.|....+++|+.|++|++||++.++.. ..+..|...+.+++ |....+|+++.| .
T Consensus 268 ----~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~-~tlt~hkksvral~lhP~e~~fASas~d-n 341 (460)
T KOG0285|consen 268 ----ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM-ITLTHHKKSVRALCLHPKENLFASASPD-N 341 (460)
T ss_pred ----ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee-EeeecccceeeEEecCCchhhhhccCCc-c
Confidence 346788999999999999998888999999999999999986554 46677888887665 557788888877 5
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
|+-|++.. ...+..+.+|+..|++++...|+ ++++|++.|.+.+||..++..
T Consensus 342 ik~w~~p~---g~f~~nlsgh~~iintl~~nsD~--------------v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 342 IKQWKLPE---GEFLQNLSGHNAIINTLSVNSDG--------------VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred ceeccCCc---cchhhccccccceeeeeeeccCc--------------eEEEcCCceEEEEEecCcCcc
Confidence 99999988 56777799999999999999988 799999999999999998753
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6e-33 Score=259.89 Aligned_cols=291 Identities=20% Similarity=0.334 Sum_probs=234.0
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCC-CcEEEeeCCcc--ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDS-KNIRVWKNLKE--FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~d-g~i~vwd~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
++..|.--+..|..++++ |++||.|+.. |.+.||+...+ +...++|...+++++++|||+++|||+.||+|+|||
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN 378 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence 344444445667778887 9999999874 79999997644 556678999999999999999999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
..++-+...+. .|+..|+.+.|+..++.+++.+-||+|+.||+...+.
T Consensus 379 ~~SgfC~vTFt--------------------------------eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 379 TQSGFCFVTFT--------------------------------EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ccCceEEEEec--------------------------------cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 98876655443 4999999999999999999999999999999999999
Q ss_pred eEEeecCC-CceeEEEEcCCC-EEEEEeCCC-cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 270 LESINAHD-DAINSVVAGFDS-LVFTGSADG-TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 270 ~~~~~~~~-~~v~~l~~~~~~-~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
.+++.... -...|++..|.| ++.+|+.|. .|.+|++.++ .+...+.+|+++|.+++|+|++..|++++.|.
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG------qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG------QLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC------eeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 99887543 456788888888 555666665 6999999643 36788999999999999999999999999999
Q ss_pred cEEEEecCCccccc-ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCcee-----------------EEEEecC
Q 012007 347 LVNFWECEKHLSHG-GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHS-----------------CLAVLTG 408 (473)
Q Consensus 347 ~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----------------~~~~~~~ 408 (473)
+|++||+-...... .....|.....++.|+|+.|++++-||.|.+||........ ....-..
T Consensus 501 TVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 501 TVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred eEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 99999986432222 23334555556777899999999999999999987631110 0011112
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.....+.|++++|+. ++++||..+.|+||++.++-
T Consensus 581 ~~K~Ftti~ySaDG~-------------~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 581 KGKTFTTICYSADGK-------------CILAGGESNSICIYDVPEGV 615 (893)
T ss_pred cCCceEEEEEcCCCC-------------EEEecCCcccEEEEECchhh
Confidence 245789999999999 89999999999999998764
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-32 Score=246.46 Aligned_cols=297 Identities=22% Similarity=0.299 Sum_probs=241.9
Q ss_pred cceeeeeeecccEEEEEecC---CEEEEeeCCCcEEEeeC--CccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 114 GLIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g---~~l~tg~~dg~i~vwd~--~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
.-++.+.||...|.++++-. =.++||++|++|-+|+- .+-...+..|..-|.|+.|+|||.++++++.||+|.+|
T Consensus 138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iy 217 (603)
T KOG0318|consen 138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIY 217 (603)
T ss_pred CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEE
Confidence 45788899999999998763 37999999999999983 35566788899999999999999999999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
|=.+++......-. .+|.+.|.+|+|+||+..+++++.|.+++|||+.+.+
T Consensus 218 DGktge~vg~l~~~-----------------------------~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 218 DGKTGEKVGELEDS-----------------------------DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred cCCCccEEEEecCC-----------------------------CCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 99888765444321 1399999999999999999999999999999999999
Q ss_pred eeEEeecCC---CceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC
Q 012007 269 CLESINAHD---DAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345 (473)
Q Consensus 269 ~~~~~~~~~---~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 345 (473)
++.++.... +....+.|. .+.|++.+.+|.|.+++.... .....+.+|...|+++..++++.+|++|+.|
T Consensus 269 lv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~------~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDP------SVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred eEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCC------ChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 999886432 333444554 678999999999999998632 2577889999999999999999999999999
Q ss_pred CcEEEEecCCcccccce---------------------------------------------------------------
Q 012007 346 GLVNFWECEKHLSHGGV--------------------------------------------------------------- 362 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~--------------------------------------------------------------- 362 (473)
|.|.-||..++......
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 99999997543211000
Q ss_pred ---------ee----------cCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 363 ---------LR----------GHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 363 ---------~~----------~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+. +......+++++++.+++|+.|+.|+||.+..... .....+..|.++|++++++||+.
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGA 500 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCc
Confidence 00 00112234556789999999999999999987432 44556678999999999999999
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+||+|...+.|.+|++.+.+....
T Consensus 501 -------------yla~~Da~rkvv~yd~~s~~~~~~ 524 (603)
T KOG0318|consen 501 -------------YLAAGDASRKVVLYDVASREVKTN 524 (603)
T ss_pred -------------EEEEeccCCcEEEEEcccCceecc
Confidence 999999999999999998876443
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-34 Score=262.01 Aligned_cols=248 Identities=25% Similarity=0.387 Sum_probs=226.7
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
+.+..++..|.++.|+|...+++++-.+|.|.||+.++......+.+ .
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--------------------------------~ 54 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--------------------------------S 54 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--------------------------------c
Confidence 34556899999999999999999999999999999999887777665 4
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
.-+|.+..|-...+++++|+.|..|+||+..+++.+..+.+|.+.|.+++.+|.. ++++++.|-.|++||.+ ..
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we-----~~ 129 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE-----NE 129 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc-----Cc
Confidence 4578888899999999999999999999999999999999999999999999987 99999999999999998 67
Q ss_pred eeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe----cCCEEEEEeCCCc
Q 012007 314 HCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA----AGNLVFSGSADRN 388 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~s~~~dg~ 388 (473)
....+.+.+|..-|.+++|+| |.+.+++++.|++|++|.+... .+...+.+|...|.|+.+ |..+|++|+.|.+
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t 208 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT 208 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence 788899999999999999999 6689999999999999999874 445688899999999986 3459999999999
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
|+|||.++ ..|++++.||...|..+.|+|.-+ +++|||.||+||||.-.+-.
T Consensus 209 iKvWDyQt---k~CV~TLeGHt~Nvs~v~fhp~lp-------------iiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 209 IKVWDYQT---KSCVQTLEGHTNNVSFVFFHPELP-------------IIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred EEEeecch---HHHHHHhhcccccceEEEecCCCc-------------EEEEecCCccEEEecCccee
Confidence 99999999 799999999999999999999988 99999999999999977643
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-33 Score=266.45 Aligned_cols=286 Identities=20% Similarity=0.351 Sum_probs=242.8
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeC--CccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~--~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
...|..++|. ..+++++-..|.|++||- ...+..|..|.++|..|+|+|++.++++||.|-.|+||+..+.++...
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 4455555554 669999999999999994 477889999999999999999999999999999999999988776544
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCC
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 278 (473)
.. +|-+.|..+.|++.-.+++++|.|.+|+||+..+++++..+.+|..
T Consensus 89 L~--------------------------------GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH 136 (1202)
T KOG0292|consen 89 LL--------------------------------GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH 136 (1202)
T ss_pred hc--------------------------------cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce
Confidence 33 6999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEcCC-CEEEEEeCCCcEEEEeCcccCCC-----------------------cceeeeeeeccCCccEEEEEEcc
Q 012007 279 AINSVVAGFD-SLVFTGSADGTVKVWRRELQGKG-----------------------TKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 279 ~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~-----------------------~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
.|.|..|+|. .++++++-|.+|+|||+..-.+. ........+.+|...|+.++|+|
T Consensus 137 YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 137 YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 9999999995 59999999999999997521110 01223456789999999999999
Q ss_pred CCCEEEEeCCCCcEEEEecCCc-ccccceeecCcceEEEEEecC--CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCC
Q 012007 335 ESAVVYCGSSDGLVNFWECEKH-LSHGGVLRGHKMAVLCLAAAG--NLVFSGSADRNICLWRREESGAHSCLAVLTGHTG 411 (473)
Q Consensus 335 ~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 411 (473)
.-.++++|+.|..|++|.+... .-.....++|.+.|.++-+++ +++++.++|++|+|||+.. ...+++++...+
T Consensus 217 TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k---Rt~v~tfrrend 293 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK---RTSVQTFRREND 293 (1202)
T ss_pred CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc---ccceeeeeccCC
Confidence 9999999999999999998643 233457789999999887775 8999999999999999998 677888877778
Q ss_pred ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 412 PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 412 ~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
..+.++.+|..+ |+.++.|+-+.|+.+....|
T Consensus 294 RFW~laahP~lN--------------LfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 294 RFWILAAHPELN--------------LFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred eEEEEEecCCcc--------------eeeeecCCceEEEEEcccCc
Confidence 899999999987 55555677788888875443
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=8.2e-33 Score=266.66 Aligned_cols=280 Identities=29% Similarity=0.486 Sum_probs=246.9
Q ss_pred ecccEEEEEecCCEEEEeeCCCcEEEeeCC--ccccc-cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSG-FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 122 h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
|...+.+..+.+.++++++.|++|++||.. ..+.. +.+|.+.|.++++...+.+|++|+.|.++++||..++++...
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~ 286 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS 286 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE
Confidence 455678888899999999999999999965 33444 899999999999987778999999999999999999987665
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCC
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 278 (473)
.. +|.+.|.++...+ .++++|+.|.+|++|++.++.++..+.+|.+
T Consensus 287 l~--------------------------------gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~ 332 (537)
T KOG0274|consen 287 LQ--------------------------------GHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTG 332 (537)
T ss_pred ec--------------------------------CCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccc
Confidence 54 5999999998754 6788899999999999999999999999999
Q ss_pred ceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc
Q 012007 279 AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS 358 (473)
Q Consensus 279 ~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 358 (473)
+|.++... ++++++|+.|+.|++||+. ....+..+.+|...|.++.+... ..+++|+.|+.|++||+++...
T Consensus 333 ~V~~v~~~-~~~lvsgs~d~~v~VW~~~------~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~ 404 (537)
T KOG0274|consen 333 PVNCVQLD-EPLLVSGSYDGTVKVWDPR------TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK 404 (537)
T ss_pred cEEEEEec-CCEEEEEecCceEEEEEhh------hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence 99999997 6799999999999999996 34467888999999999988765 8899999999999999998746
Q ss_pred ccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC-CCCceeEEEEecCCCCCcccccCCCccEE
Q 012007 359 HGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG-HTGPVKCLAVEEDRDHDHEYHQKGDQRWT 437 (473)
Q Consensus 359 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~~~~~~~~~~ 437 (473)
....+.+|...+..+...+++|++++.|++|++||... ..++..+.+ |.+.|+.+++. .. .
T Consensus 405 c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~---~~~~~~~~~~~~~~v~~l~~~--~~-------------~ 466 (537)
T KOG0274|consen 405 CIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEE---GECLRTLEGRHVGGVSALALG--KE-------------E 466 (537)
T ss_pred hhhhhcCCcccccccccccceeEeccccccEEEeeccc---CceeeeeccCCcccEEEeecC--cc-------------e
Confidence 66789999999999999999999999999999999998 678888888 77899999988 22 6
Q ss_pred EEEeeCCCcEEEEEcCCCCCCccC
Q 012007 438 VYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 438 l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
+++++.||++++||+..+......
T Consensus 467 il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 467 ILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEEEecCCeeEEEecccCchhhhh
Confidence 999999999999999998765544
No 39
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-32 Score=228.17 Aligned_cols=288 Identities=17% Similarity=0.258 Sum_probs=236.3
Q ss_pred eeeeecccEEEEEec--CCEEEEeeCCCcEEEee--CCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 118 SIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd--~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
-|.||+.+++.+.++ |++|++++.|.++.||- ..+.+-++.+|++.|.|+..+-+.++|++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 367899999999876 99999999999999995 45778899999999999999999999999999999999999999
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-----CCCEEEEEcC---
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-----DKTLKVWRIS--- 265 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-----dg~v~vwd~~--- 265 (473)
++..... ...+|..+.|+.+|++++.... .+.|.++|++
T Consensus 85 k~la~~k---------------------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 85 KQLATWK---------------------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred cEEEEee---------------------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 8876665 5678999999999998887753 3569999998
Q ss_pred ----CCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEE
Q 012007 266 ----DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340 (473)
Q Consensus 266 ----~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 340 (473)
..++...+..+...++.+.|.+-+ .|++|..||.|..||.+ .....+.....|...|+.|.++++..+++
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~-----~g~~~v~s~~~h~~~Ind~q~s~d~T~Fi 206 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDAR-----TGKELVDSDEEHSSKINDLQFSRDRTYFI 206 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcc-----cCceeeechhhhccccccccccCCcceEE
Confidence 445678888899999999999887 99999999999999998 34456677788999999999999999999
Q ss_pred EeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecC--CCC---------ceeEEEEecCC
Q 012007 341 CGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRRE--ESG---------AHSCLAVLTGH 409 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~--~~~---------~~~~~~~~~~h 409 (473)
+++.|.+-++||..+................+++|...+++.|+.....-|=... .++ ..+.+..+.+|
T Consensus 207 T~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH 286 (327)
T KOG0643|consen 207 TGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH 286 (327)
T ss_pred ecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence 9999999999999986655544444445556667776666666543222222111 110 13456778899
Q ss_pred CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 410 ~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
-++|++++|+|++. ..++|+.||.|++.-+....
T Consensus 287 FGPINsvAfhPdGk-------------sYsSGGEDG~VR~h~Fd~~Y 320 (327)
T KOG0643|consen 287 FGPINSVAFHPDGK-------------SYSSGGEDGYVRLHHFDSNY 320 (327)
T ss_pred ccCcceeEECCCCc-------------ccccCCCCceEEEEEeccch
Confidence 99999999999999 79999999999998776543
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.8e-35 Score=249.75 Aligned_cols=238 Identities=29% Similarity=0.505 Sum_probs=209.8
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
....|.|+.+. ...+++|..|.+|+|||..+..+.... .||++.|.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L--------------------------------~GHtGSVL 241 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL--------------------------------TGHTGSVL 241 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh--------------------------------hcCCCcEE
Confidence 45679999995 448999999999999999876543322 36999999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
|+.|.. +.+++|+.|.+|++||+++++++.++-.|...|..+.|+ ++++++++.|.+|.+||+... ....+...
T Consensus 242 CLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sp---s~it~rrV 315 (499)
T KOG0281|consen 242 CLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASP---TDITLRRV 315 (499)
T ss_pred eeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCc---hHHHHHHH
Confidence 999854 699999999999999999999999999999999999995 679999999999999999743 24445667
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCc
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGA 399 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 399 (473)
+.+|..+|+.+.|+ .+++++++.|.+|++|++.+. .....+.+|.-.|.|+.+.++++++|+.|.+|++||+..
T Consensus 316 LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~--- 389 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC--- 389 (499)
T ss_pred Hhhhhhheeeeccc--cceEEEecCCceEEEEeccce-eeehhhhcccccceehhccCeEEEecCCCceEEEEeccc---
Confidence 88999999999996 559999999999999999985 455788999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 400 HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 400 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+.++..+.||..-|.++.|... .+++|+.||+|+|||+......
T Consensus 390 G~cLRvLeGHEeLvRciRFd~k---------------rIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 390 GACLRVLEGHEELVRCIRFDNK---------------RIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred cHHHHHHhchHHhhhheeecCc---------------eeeeccccceEEEEecccccCC
Confidence 6899999999999999999875 5999999999999999876544
No 41
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=252.71 Aligned_cols=243 Identities=24% Similarity=0.375 Sum_probs=209.1
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
...|..|.|.|+|+.|++|+..|.+.+|+....... .+...|.++|.+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--------------------------------tilQaHDs~Vr~ 143 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--------------------------------TILQAHDSPVRT 143 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHH--------------------------------HHhhhhccccee
Confidence 467999999999999999999999999997443221 122249999999
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecC-CCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH-DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
+.|++++.++++|+.+|.|++|+... ..+..+.+| ...|.+++|+|.. .+++++.||+|+|||..... ...
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k------ee~ 216 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK------EER 216 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc------hhh
Confidence 99999999999999999999999754 444555554 4899999999876 99999999999999986332 345
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCC
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.+.+|.-.|.++.|+|...+|++++.|..|++||.+++..+ ..+.+|+..|+.+.+ ++++|++++.|..+++||+++
T Consensus 217 vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl-~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL-ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred eeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh-hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence 66899999999999999999999999999999999997655 577789999988776 589999999999999999997
Q ss_pred CCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 397 SGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 397 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.+.+.++++|...|++++|+|-... +|.+|+.||.|..|.+...++.
T Consensus 296 ---mkEl~~~r~Hkkdv~~~~WhP~~~~------------lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 296 ---MKELFTYRGHKKDVTSLTWHPLNES------------LFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred ---hHHHHHhhcchhhheeecccccccc------------ceeeccCCCceEEEeccccccc
Confidence 6778899999999999999998775 8999999999999999844443
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.4e-33 Score=232.73 Aligned_cols=258 Identities=22% Similarity=0.330 Sum_probs=215.3
Q ss_pred CccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 151 LKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 151 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
...+..+.+|++.|..+.|+|+|.+||+|+.|..|.+|++....... ..
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-------------------------------~~ 85 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-------------------------------WV 85 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-------------------------------ee
Confidence 34566788999999999999999999999999999999976543211 11
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCccc
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~ 308 (473)
..+|.++|..+.|.++++.+++++.|.+|+.||+++|++++.++.|...|+.+....-+ ++.+++.||++++||++..
T Consensus 86 lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 86 LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred eccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence 12599999999999999999999999999999999999999999999999999855555 7889999999999999843
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCC
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSAD 386 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~d 386 (473)
+. .........++++.|..++..+++|+-|+.|++||+++. .....+.||...|+.++ ++|.++.+-+.|
T Consensus 166 ~~-------~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd 237 (338)
T KOG0265|consen 166 EA-------IKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMD 237 (338)
T ss_pred ch-------hhccccceeEEEEEecccccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCcccccccc
Confidence 21 122334678999999999999999999999999999875 34468899999997765 679999999999
Q ss_pred CcEEEEecCCCCc-eeEEEEecCCCC----ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 387 RNICLWRREESGA-HSCLAVLTGHTG----PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 387 g~i~iwd~~~~~~-~~~~~~~~~h~~----~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
.++++||++.-.. ..++..+.+|.. ....++|+|++. .+.+|+.|+.|++||........+
T Consensus 238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~-------------~i~ags~dr~vyvwd~~~r~~lyk 303 (338)
T KOG0265|consen 238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-------------KITAGSADRFVYVWDTTSRRILYK 303 (338)
T ss_pred ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC-------------ccccccccceEEEeecccccEEEE
Confidence 9999999986332 456888887743 356789999998 799999999999999987554443
No 43
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-33 Score=241.20 Aligned_cols=270 Identities=23% Similarity=0.368 Sum_probs=232.0
Q ss_pred CEEEEeeCCCcEEEee---CC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 134 DLLYTGSDSKNIRVWK---NL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd---~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
+-++.|.-.+..+..+ .. .....+.+|..+|+.+-|+|+-..+++++.|++|++||..+++.....+
T Consensus 77 ~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr--------- 147 (406)
T KOG0295|consen 77 DELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR--------- 147 (406)
T ss_pred cccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh---------
Confidence 4455554445444433 22 4456677899999999999999999999999999999999998643332
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-CeeeEEeecCCCceeEEEEcCC
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESINAHDDAINSVVAGFD 288 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~v~~l~~~~~ 288 (473)
+|.+.|..|.|+..|++|++++.|-.+++||..+ .++++.+.+|+..|.++++-|.
T Consensus 148 -----------------------GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~ 204 (406)
T KOG0295|consen 148 -----------------------GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL 204 (406)
T ss_pred -----------------------ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec
Confidence 5999999999999999999999999999999987 6788888999999999999988
Q ss_pred C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc
Q 012007 289 S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK 367 (473)
Q Consensus 289 ~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 367 (473)
+ ++++++.|.+|+.|++.++ ..+..+.+|...|..++.+.||.++++++.|.+|++|-+.+. .....++.|.
T Consensus 205 gd~ilS~srD~tik~We~~tg------~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~-~~k~~lR~hE 277 (406)
T KOG0295|consen 205 GDHILSCSRDNTIKAWECDTG------YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK-QCKAELREHE 277 (406)
T ss_pred CCeeeecccccceeEEecccc------eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc-hhhhhhhccc
Confidence 7 9999999999999999733 346788999999999999999999999999999999999874 3445777788
Q ss_pred ceEEEEEec-----------------CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccccc
Q 012007 368 MAVLCLAAA-----------------GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQ 430 (473)
Q Consensus 368 ~~v~~~~~~-----------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~ 430 (473)
.++-|+++. +.++++++.|++|++||+.+ ..++.++.+|...|..++|+|.|+
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t---g~cL~tL~ghdnwVr~~af~p~Gk------- 347 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST---GMCLFTLVGHDNWVRGVAFSPGGK------- 347 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC---CeEEEEEecccceeeeeEEcCCCe-------
Confidence 777766541 35999999999999999999 699999999999999999999999
Q ss_pred CCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 431 KGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 431 ~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+|+++.+|+++++||++.....
T Consensus 348 ------yi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 348 ------YILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred ------EEEEEecCCcEEEEEeccceee
Confidence 9999999999999999987643
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-33 Score=225.61 Aligned_cols=254 Identities=24% Similarity=0.330 Sum_probs=219.6
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+.+..+..+.++|.++.|+-||+|.++|+.|.+|++|+...+.++....
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs------------------------------- 56 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS------------------------------- 56 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-------------------------------
Confidence 3456778899999999999999999999999999999998887655443
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCC
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~ 310 (473)
+|...|..++.+.|+..|++|+.|..|.+||+++|+.++.+.+|.+.|+.+.|+.+. .+++|+.|..+++||.+.
T Consensus 57 -ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS--- 132 (307)
T KOG0316|consen 57 -GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS--- 132 (307)
T ss_pred -CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc---
Confidence 599999999999999999999999999999999999999999999999999999887 899999999999999985
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEE
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNIC 390 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~ 390 (473)
....+++.+......|.++... +..+++|+.||+++.||++.+... ....+|.....+++.+++.+++++.|++++
T Consensus 133 -~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~-sDy~g~pit~vs~s~d~nc~La~~l~stlr 208 (307)
T KOG0316|consen 133 -RSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS-SDYFGHPITSVSFSKDGNCSLASSLDSTLR 208 (307)
T ss_pred -CCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceee-hhhcCCcceeEEecCCCCEEEEeeccceee
Confidence 3445677788888899999886 567999999999999999987554 345578888888899999999999999999
Q ss_pred EEecCCCCceeEEEEecCCCCcee--EEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVK--CLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~--~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+.|-.+ ++++..+.||...=. ..++..... .+++|++||.|.+||+-+.....+
T Consensus 209 LlDk~t---GklL~sYkGhkn~eykldc~l~qsdt-------------hV~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 209 LLDKET---GKLLKSYKGHKNMEYKLDCCLNQSDT-------------HVFSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred ecccch---hHHHHHhcccccceeeeeeeecccce-------------eEEeccCCceEEEEEeccceeeee
Confidence 999988 688999999976433 445555544 799999999999999988765444
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-33 Score=231.31 Aligned_cols=284 Identities=18% Similarity=0.323 Sum_probs=237.1
Q ss_pred eeeeecccEEEEEec-----CCEEEEeeCCCcEEEe--eCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 118 SIVRKEGHIYSLAAS-----GDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~-----g~~l~tg~~dg~i~vw--d~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
+-.+|..+|..+.++ |-+|++++.||.-.+- |+..-+.+|.+|.++|....++.+..+-++++.|=+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 345788899888764 7799999999977665 466778999999999999999999889999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe-e
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK-C 269 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~-~ 269 (473)
-++.....+. |..-|..++|+.|.++|++|+.+..++|||++..+ +
T Consensus 89 ~tgdelhsf~---------------------------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 89 VTGDELHSFE---------------------------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred hhhhhhhhhh---------------------------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC
Confidence 8887655443 88899999999999999999999999999997654 5
Q ss_pred eEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcE
Q 012007 270 LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 348 (473)
..++.+|.+.|..+.|.... .|++.+.|++||+||.+++.. ++ ....+..|+++.++++|++|.++ ..+.|
T Consensus 136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~------v~-sL~~~s~VtSlEvs~dG~ilTia-~gssV 207 (334)
T KOG0278|consen 136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE------VQ-SLEFNSPVTSLEVSQDGRILTIA-YGSSV 207 (334)
T ss_pred chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE------EE-EEecCCCCcceeeccCCCEEEEe-cCcee
Confidence 67788999999999886554 888889999999999986542 12 22346789999999999988655 45789
Q ss_pred EEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe-cCCCCceeEEEEecCCCCCcc
Q 012007 349 NFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL-TGHTGPVKCLAVEEDRDHDHE 427 (473)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~ 427 (473)
.+||..+...+............++.|+...+++|+.|..++.||..++ ..+..+ .+|.++|.|+.|+|++.
T Consensus 208 ~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg---eEi~~~nkgh~gpVhcVrFSPdGE---- 280 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG---EEIGSYNKGHFGPVHCVRFSPDGE---- 280 (334)
T ss_pred EEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCC---ceeeecccCCCCceEEEEECCCCc----
Confidence 9999987655544444455556778899999999999999999999995 444454 89999999999999999
Q ss_pred cccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+.++||.||+|++|.+..++..
T Consensus 281 ---------~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 281 ---------LYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ---------eeeccCCCceEEEEEecCCCch
Confidence 8999999999999999877654
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=251.24 Aligned_cols=337 Identities=21% Similarity=0.336 Sum_probs=245.1
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
...-++.+|...|+++.++ |..|++|+.|+.|.|||+. .....+.+|...|+..-|..+.++|++.+.|+.|++||
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~Wd 177 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWD 177 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEe
Confidence 4566788899999988887 8899999999999999965 45667888888888888888777888888888888888
Q ss_pred CCCCCeeeEEee----------cc----------------c--c--------------------------------ccce
Q 012007 190 VSRKNASVHKRV----------GS----------------L--P--------------------------------TFKD 209 (473)
Q Consensus 190 ~~~~~~~~~~~~----------~~----------------~--~--------------------------------~~~~ 209 (473)
+++..+...... .. + + ....
T Consensus 178 L~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r 257 (888)
T KOG0306|consen 178 LETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR 257 (888)
T ss_pred cccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence 866443211000 00 0 0 0000
Q ss_pred eEeec---------------------------------------------------------------------------
Q 012007 210 YVKSS--------------------------------------------------------------------------- 214 (473)
Q Consensus 210 ~~~~~--------------------------------------------------------------------------- 214 (473)
++.+.
T Consensus 258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~ 337 (888)
T KOG0306|consen 258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT 337 (888)
T ss_pred EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence 00000
Q ss_pred -----CCCcceEEEee----------cceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE-------
Q 012007 215 -----VNPKNYVEVRR----------NRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES------- 272 (473)
Q Consensus 215 -----~~~~~~~~~~~----------~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~------- 272 (473)
.+...+..+.. .......+|...|..++++.+...+++|+ .+.|++|+..+.+++++
T Consensus 338 lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l 416 (888)
T KOG0306|consen 338 LVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYIL 416 (888)
T ss_pred EEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEE
Confidence 00000000000 01133446888888888888877777665 46788888776654433
Q ss_pred ---------------------------------eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCC--Ccceee
Q 012007 273 ---------------------------------INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK--GTKHCL 316 (473)
Q Consensus 273 ---------------------------------~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~--~~~~~~ 316 (473)
+++|.+.|+.++..|++ .+++|+.|.+|++||...... +.....
T Consensus 417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ 496 (888)
T KOG0306|consen 417 ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV 496 (888)
T ss_pred EEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence 35788999999999998 899999999999999764322 111111
Q ss_pred ----eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEE
Q 012007 317 ----AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNIC 390 (473)
Q Consensus 317 ----~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~ 390 (473)
......-...|.|+.++||+++|+++-.|.+|+||-+.+. ...-.+.||..+|.|+ +||+++++||+.|.+|+
T Consensus 497 lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 497 LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCeEEeccCCCceE
Confidence 1123345678999999999999999999999999999874 4445788999999886 58899999999999999
Q ss_pred EEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCCcccc
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSPTQM 468 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~~~~~ 468 (473)
||-++- +.|-..+-+|...|.++.|.|... +++|+|.|+.|+-||-...+.......+...+
T Consensus 576 iWGLdF---GDCHKS~fAHdDSvm~V~F~P~~~-------------~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev 637 (888)
T KOG0306|consen 576 IWGLDF---GDCHKSFFAHDDSVMSVQFLPKTH-------------LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEV 637 (888)
T ss_pred Eecccc---chhhhhhhcccCceeEEEEcccce-------------eEEEecCcceEEeechhhhhhheeeccchhee
Confidence 999887 578888899999999999999876 89999999999999977665444443333333
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4e-31 Score=219.57 Aligned_cols=249 Identities=20% Similarity=0.325 Sum_probs=211.1
Q ss_pred cccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 153 EFSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
.+..+.+|.+.|..++|+|- |..||+|+.|+.|++|+...+.......+ +-
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~v----------------------------ld 57 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTV----------------------------LD 57 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEe----------------------------cc
Confidence 34567889999999999998 88999999999999999985332111111 11
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC--CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCccc
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD--CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~--~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~ 308 (473)
-+|+..|.+++|+|.|++|++|+.|.++.||.-.. .+++..+++|...|.|++|+++| +|++++.|..|-||.+..+
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 14999999999999999999999999999998764 47899999999999999999998 9999999999999998733
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC--CcccccceeecCcceEEEEEec--CCEEEEEe
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE--KHLSHGGVLRGHKMAVLCLAAA--GNLVFSGS 384 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~ 384 (473)
........+.+|...|..+.|+|...+|++++.|.+|++|+-. ........+.+|...|.+++|+ |..|++++
T Consensus 138 ---dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 138 ---DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred ---CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 4556678899999999999999999999999999999999765 3455667889999999888765 88999999
Q ss_pred CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.|++|+||..... .-..|...+..++|. ++ .|+|++.|+.|+++.-..
T Consensus 215 dD~tv~Iw~~~~~-------~~~~~sr~~Y~v~W~-~~--------------~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 215 DDGTVSIWRLYTD-------LSGMHSRALYDVPWD-NG--------------VIASGGGDDAIRLFKESD 262 (312)
T ss_pred CCcceEeeeeccC-------cchhcccceEeeeec-cc--------------ceEeccCCCEEEEEEecC
Confidence 9999999986641 113478899999999 44 799999999999999875
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-32 Score=246.92 Aligned_cols=285 Identities=19% Similarity=0.292 Sum_probs=240.2
Q ss_pred eeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 117 GSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
+.+..|...|.++.+. ..+++++-.+|.|.|||.. ..++.+.-...+|.+..|-+..+++++|+.|..|+||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 3455578888888765 6699999999999999854 56777888889999999999999999999999999999999
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-CeeeE
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLE 271 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~ 271 (473)
.+.+..+. .|.+.|.|++.+|...++++++.|-+|++||.+. ..+.+
T Consensus 87 ~ekV~~Fe--------------------------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q 134 (794)
T KOG0276|consen 87 GEKVKTFE--------------------------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ 134 (794)
T ss_pred ceeeEEee--------------------------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee
Confidence 88666555 3999999999999999999999999999999975 47889
Q ss_pred EeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC--CEEEEeCCCCc
Q 012007 272 SINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES--AVVYCGSSDGL 347 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~ 347 (473)
++.+|...|.+++|.|.. .+++++-|++|++|.+. ...+..++.+|...|+++.+-+.| .+|++|+.|.+
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t 208 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT 208 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcC------CCCCceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence 999999999999999986 99999999999999985 333567788999999999998844 79999999999
Q ss_pred EEEEecCCcccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 348 VNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
|+|||.++. .+.+.+.||...|.+..+. =.++++|++||+++||+..+ .+....+.---+.|.||+-.+...
T Consensus 209 iKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T---y~lE~tLn~gleRvW~I~~~k~~~-- 282 (794)
T KOG0276|consen 209 IKVWDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT---YKLEKTLNYGLERVWCIAAHKGDG-- 282 (794)
T ss_pred EEEeecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcc---eehhhhhhcCCceEEEEeecCCCC--
Confidence 999999984 5567889999888776665 56899999999999999887 666666666678899999888776
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
.++.|.+.|.| +.++....|
T Consensus 283 -----------~i~vG~Deg~i-~v~lgreeP 302 (794)
T KOG0276|consen 283 -----------KIAVGFDEGSV-TVKLGREEP 302 (794)
T ss_pred -----------eEEEeccCCcE-EEEccCCCC
Confidence 56776666554 344444433
No 49
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-32 Score=221.76 Aligned_cols=260 Identities=21% Similarity=0.323 Sum_probs=216.7
Q ss_pred CCcEEEeeCC--cccccccc--CcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCC
Q 012007 142 SKNIRVWKNL--KEFSGFKS--NSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVN 216 (473)
Q Consensus 142 dg~i~vwd~~--~~~~~~~~--h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (473)
.|.+.|-+.. +.+..+.. -...+..++|+++. +.+++++.||++++||+.......
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi------------------- 97 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPI------------------- 97 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcch-------------------
Confidence 5788888764 33333322 35679999999864 688899999999999964332211
Q ss_pred CcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEE
Q 012007 217 PKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFT 293 (473)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s 293 (473)
..+..|...|.++.|++ .+..++++++|++|++|+....+.+.++.+|...|....|+|.. ++++
T Consensus 98 ------------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas 165 (311)
T KOG0277|consen 98 ------------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFAS 165 (311)
T ss_pred ------------hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEE
Confidence 11224999999999998 66788888999999999999999999999999999999999874 9999
Q ss_pred EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE
Q 012007 294 GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 294 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
++.|+.+++||++..++ ...+..|...|.++.|+. +..+|++|+.|+.|++||+++...+...+.+|...|..
T Consensus 166 ~Sgd~~l~lwdvr~~gk------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk 239 (311)
T KOG0277|consen 166 ASGDGTLRLWDVRSPGK------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK 239 (311)
T ss_pred ccCCceEEEEEecCCCc------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE
Confidence 99999999999985432 233778999999999998 66889999999999999999988888899999999988
Q ss_pred EEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEE
Q 012007 373 LAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKV 449 (473)
Q Consensus 373 ~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~i 449 (473)
+.++ ..+|++++.|-+++|||.... ..++.+..-|+.-|..+.|++.... ++|+++.|+.++|
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~--ds~~e~~~~HtEFv~g~Dws~~~~~------------~vAs~gWDe~l~V 305 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQ--DSAIETVDHHTEFVCGLDWSLFDPG------------QVASTGWDELLYV 305 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccc--hhhhhhhhccceEEeccccccccCc------------eeeecccccceee
Confidence 8765 578999999999999998853 4567777889999999999998664 8999999999999
Q ss_pred EEc
Q 012007 450 WRV 452 (473)
Q Consensus 450 W~i 452 (473)
|+-
T Consensus 306 w~p 308 (311)
T KOG0277|consen 306 WNP 308 (311)
T ss_pred ecc
Confidence 984
No 50
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-31 Score=226.87 Aligned_cols=325 Identities=19% Similarity=0.281 Sum_probs=248.1
Q ss_pred cccceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 112 CNGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 112 ~~~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
...+++.+.||.+.|+.++.+ ...+.+++.|.+.+||.+. .++..+.+|.+.|++|.|++.+.++++++.|++-.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 345788899999999999987 4589999999999999865 788899999999999999999999999999999999
Q ss_pred EeCCCCCeeeE----Ee------eccccccceeEeecC-CCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC
Q 012007 188 WKVSRKNASVH----KR------VGSLPTFKDYVKSSV-NPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD 256 (473)
Q Consensus 188 wd~~~~~~~~~----~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d 256 (473)
|...-.-.... .. ............+.. .+... -+.....+.+|...|.+..|...|+.++++++|
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t---iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT---IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce---eeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 98321110000 00 000000000011000 00001 111223455799999999999999999999999
Q ss_pred CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC
Q 012007 257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE 335 (473)
Q Consensus 257 g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 335 (473)
.+..+||+++++.+..+.+|+...+.++-+|.. ++++.+.|.+.++||.+ .....+..+.+|...|+++.|.-+
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR-----eaI~sV~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR-----EAIQSVAVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch-----hhcceeeeecccccceeEEEEecC
Confidence 999999999999999999999999999998887 78899999999999998 455567889999999999999976
Q ss_pred CCEEEEeCCCCcEEEEecCCcccccceeecC-cceEEEEEecCCEEEEEeCCCcEEEEecCCCCcee-EEEEecCCCCce
Q 012007 336 SAVVYCGSSDGLVNFWECEKHLSHGGVLRGH-KMAVLCLAAAGNLVFSGSADRNICLWRREESGAHS-CLAVLTGHTGPV 413 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~V 413 (473)
.+ +++|+.|.+|++||+++...+...+... ...-..++..+..++.--.+..|++||++...... +-..-.+|...|
T Consensus 369 d~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 369 DR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMV 447 (481)
T ss_pred Cc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceee
Confidence 54 7799999999999999876665554432 22334455556788888888999999998732211 122345899999
Q ss_pred eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 414 KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+|++|..+..-+ -|+++|.|..+.-|++....
T Consensus 448 ~c~AW~eehp~c-----------nLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 448 TCCAWLEEHPAC-----------NLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeeeccccCccc-----------ccccccccceeeeeEecccC
Confidence 999999876521 48999999999999997654
No 51
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.8e-31 Score=254.40 Aligned_cols=253 Identities=27% Similarity=0.441 Sum_probs=210.3
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
+...|.++.|+++|++|++++.|+.+++|+........... ..+|...|.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~------------------------------l~~h~~~v~ 207 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRE------------------------------LSGHTRGVS 207 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcc------------------------------cccccccee
Confidence 47889999999999999999999999999996554200000 025999999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEc-CCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRI-SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~-~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
+++|+|++.++++++.|++|+|||+ ..+..++++++|...|++++|+|.+ ++++|+.|++|++||++. ....
T Consensus 208 ~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~------~~~~ 281 (456)
T KOG0266|consen 208 DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT------GECV 281 (456)
T ss_pred eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC------CeEE
Confidence 9999999999999999999999999 5568999999999999999999998 999999999999999974 4467
Q ss_pred eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc-cceeecCcce--E--EEEEecCCEEEEEeCCCcEEEE
Q 012007 318 QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH-GGVLRGHKMA--V--LCLAAAGNLVFSGSADRNICLW 392 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~--v--~~~~~~~~~l~s~~~dg~i~iw 392 (473)
..+.+|...|++++|++++++|++++.|+.|++||+.++... ...+.++... + .++++++.+|++++.|+.+++|
T Consensus 282 ~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 282 RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW 361 (456)
T ss_pred EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence 889999999999999999999999999999999999987631 2333333333 3 5566789999999999999999
Q ss_pred ecCCCCceeEEEEecCCCCce---eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCC
Q 012007 393 RREESGAHSCLAVLTGHTGPV---KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHS 464 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V---~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~ 464 (473)
|+.. ..++..+.+|...+ .+....+.+. ++++|+.|+.|++|++.++........+
T Consensus 362 ~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 362 DLRS---GKSVGTYTGHSNLVRCIFSPTLSTGGK-------------LIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred EccC---CcceeeecccCCcceeEecccccCCCC-------------eEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 9998 57788888887753 3334455666 8999999999999999986655444333
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=233.45 Aligned_cols=278 Identities=22% Similarity=0.345 Sum_probs=228.6
Q ss_pred cccEEE--EEecCCEEEEeeCCCcEEEeeCC--cc--------ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 123 EGHIYS--LAASGDLLYTGSDSKNIRVWKNL--KE--------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 123 ~~~V~~--~~~~g~~l~tg~~dg~i~vwd~~--~~--------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
..++-| ++|||+||++|+.||.|.|||.. +. ...+.-+..+|.|+.|+.|..+|++|+.||.|+||.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 444544 67889999999999999999843 11 2235568899999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
.++.+...+.. .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++
T Consensus 293 ~tG~ClRrFdr-------------------------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L 341 (508)
T KOG0275|consen 293 ETGQCLRRFDR-------------------------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL 341 (508)
T ss_pred ecchHHHHhhh-------------------------------hhccCeeEEEEccCcchhhcccccceEEEeccccchhH
Confidence 99987665543 29999999999999999999999999999999999999
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeCCCCcE
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGSSDGLV 348 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i 348 (473)
.++++|...|+...|.++| .+++++.||+|++|+..+.+.... ....+...+|..+..-|. -..++++...++|
T Consensus 342 KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~T----fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 342 KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLST----FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhh----ccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 9999999999999999998 999999999999999875432111 122335667888887774 4678888889999
Q ss_pred EEEecCCccccc---ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 349 NFWECEKHLSHG---GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 349 ~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
.|.++....... ....+...-..+++|.|.++++.++|+.++.|.+.+ +.+...+.-|...|-.++-+|..+
T Consensus 418 ~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s---G~LE~tl~VhEkdvIGl~HHPHqN-- 492 (508)
T KOG0275|consen 418 YIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS---GKLERTLPVHEKDVIGLTHHPHQN-- 492 (508)
T ss_pred EEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec---CceeeeeecccccccccccCcccc--
Confidence 999987532111 111222333466789999999999999999999998 466777888999999999999988
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEE
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
++|+-+.||.+++|.
T Consensus 493 -----------llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 -----------LLASYSEDGLLKLWK 507 (508)
T ss_pred -----------hhhhhcccchhhhcC
Confidence 899999999999996
No 53
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.6e-30 Score=229.13 Aligned_cols=277 Identities=21% Similarity=0.304 Sum_probs=234.7
Q ss_pred ccEEEEEecC--CEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 124 GHIYSLAASG--DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 124 ~~V~~~~~~g--~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
..+.++...+ ..++||+.|.++.++|.. +.+..++||...|+.+.++++...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 3466777654 799999999999999854 678899999999999999999999999999999999998765532222
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec--CC
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA--HD 277 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~ 277 (473)
. .|..+|+.+..+|.|.||++++.|++..+.|++++.++..... ..
T Consensus 300 ~--------------------------------~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~ 347 (506)
T KOG0289|consen 300 R--------------------------------PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD 347 (506)
T ss_pred c--------------------------------cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc
Confidence 2 3999999999999999999999999999999999998877654 33
Q ss_pred CceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc
Q 012007 278 DAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 278 ~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 356 (473)
-.+++.+|+||| .|.+|..||.|++||+..+ .....+.+|.++|..++|+.+|.+|++++.|+.|++||+++.
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~------~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ------TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCc------cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 468999999999 6678999999999999743 246778899999999999999999999999999999999987
Q ss_pred ccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCc
Q 012007 357 LSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQ 434 (473)
Q Consensus 357 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~ 434 (473)
.............+.++++| |.+|+.++.|=.|++++-.+ ..+.++..+..|.+..+++.|.....
T Consensus 422 ~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~~aq----------- 489 (506)
T KOG0289|consen 422 KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGEHAQ----------- 489 (506)
T ss_pred cccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeecccce-----------
Confidence 66555544444456565555 99999998887777777555 55889999999999999999999988
Q ss_pred cEEEEEeeCCCcEEEEEc
Q 012007 435 RWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 435 ~~~l~s~s~Dg~v~iW~i 452 (473)
+++++|.|..++++.+
T Consensus 490 --~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 490 --YLASTSMDAILRLYAL 505 (506)
T ss_pred --EEeeccchhheEEeec
Confidence 8999999999998865
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-31 Score=253.75 Aligned_cols=252 Identities=25% Similarity=0.397 Sum_probs=218.9
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
..|...+..|..++|+|...+++++-..|.|++||..-+.+...+. .|
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd--------------------------------eH 50 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD--------------------------------EH 50 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh--------------------------------cc
Confidence 3456677899999999999999999999999999987665443332 49
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
.++|..++|+|++.++++|+.|..|+||+..+.+++.++.+|.+.|..+.|++.- +|++++.|.+|+||+.. .
T Consensus 51 dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq------s 124 (1202)
T KOG0292|consen 51 DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ------S 124 (1202)
T ss_pred CCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc------C
Confidence 9999999999999999999999999999999999999999999999999999886 99999999999999996 3
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc----------------------------ccccceeec
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH----------------------------LSHGGVLRG 365 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------~~~~~~~~~ 365 (473)
...+..+.+|...|.|..|+|....+++++.|.+|++||+..- .....++.|
T Consensus 125 r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 125 RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence 3457889999999999999999999999999999999997421 112345678
Q ss_pred CcceEEEEEecC--CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC
Q 012007 366 HKMAVLCLAAAG--NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 366 ~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~ 443 (473)
|.-.|.-.++.+ .++++|+.|..|++|.++..+. -.+.+..||.+.|.++-|+|... +++|.|.
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-WEvDtcrgH~nnVssvlfhp~q~-------------lIlSnsE 270 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTCRGHYNNVSSVLFHPHQD-------------LILSNSE 270 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEeccccc-eeehhhhcccCCcceEEecCccc-------------eeEecCC
Confidence 888887777766 7999999999999999987443 34667789999999999999887 8999999
Q ss_pred CCcEEEEEcCCCCCC
Q 012007 444 DKSVKVWRVSEHAPD 458 (473)
Q Consensus 444 Dg~v~iW~i~~~~~~ 458 (473)
|++|+|||+......
T Consensus 271 DksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 271 DKSIRVWDMTKRTSV 285 (1202)
T ss_pred CccEEEEecccccce
Confidence 999999999877543
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=6.7e-30 Score=265.80 Aligned_cols=270 Identities=18% Similarity=0.235 Sum_probs=214.4
Q ss_pred CCcEEEeeCCcc-------ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeec
Q 012007 142 SKNIRVWKNLKE-------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSS 214 (473)
Q Consensus 142 dg~i~vwd~~~~-------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (473)
+|.+++|+.... ...+..|.+.|.+++|+++|++|++|+.|+.|+||++......... .
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~--~------------ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD--I------------ 522 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc--c------------
Confidence 566777764421 1234568999999999999999999999999999997642100000 0
Q ss_pred CCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CC-EE
Q 012007 215 VNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DS-LV 291 (473)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l 291 (473)
........+...|.+++|++ ++.+|++++.||+|++||+.+++.+..+.+|...|++++|++ ++ +|
T Consensus 523 -----------~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 523 -----------HYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred -----------ccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEE
Confidence 00011122456789999987 578999999999999999999999999999999999999986 44 89
Q ss_pred EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc-cCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE
Q 012007 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN-QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV 370 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 370 (473)
++|+.||.|++||++... ....+. +...|.++.|+ +++.+|++|+.||.|++||+++.......+.+|...|
T Consensus 592 ~Sgs~Dg~v~iWd~~~~~------~~~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V 664 (793)
T PLN00181 592 ASGSDDGSVKLWSINQGV------SIGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV 664 (793)
T ss_pred EEEcCCCEEEEEECCCCc------EEEEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCE
Confidence 999999999999997432 122333 34678999995 5789999999999999999987654455677899999
Q ss_pred EEEEe-cCCEEEEEeCCCcEEEEecCCCC---ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc
Q 012007 371 LCLAA-AGNLVFSGSADRNICLWRREESG---AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446 (473)
Q Consensus 371 ~~~~~-~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~ 446 (473)
.++.+ ++.+|++++.|++|++||+.... ...++..+.+|...+.+++|++++. +|++|+.|+.
T Consensus 665 ~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-------------~lasgs~D~~ 731 (793)
T PLN00181 665 SYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-------------YIATGSETNE 731 (793)
T ss_pred EEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-------------EEEEEeCCCE
Confidence 88876 58899999999999999997521 2356788999999999999999988 8999999999
Q ss_pred EEEEEcCCCC
Q 012007 447 VKVWRVSEHA 456 (473)
Q Consensus 447 v~iW~i~~~~ 456 (473)
|++|+.....
T Consensus 732 v~iw~~~~~~ 741 (793)
T PLN00181 732 VFVYHKAFPM 741 (793)
T ss_pred EEEEECCCCC
Confidence 9999986553
No 56
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=4.6e-30 Score=240.54 Aligned_cols=281 Identities=25% Similarity=0.385 Sum_probs=235.5
Q ss_pred eeeeeecccEEEEEecCC--EEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 117 GSIVRKEGHIYSLAASGD--LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~~g~--~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
-++.||...|.+++++.+ .+++|+ .+.|+||+.. +++.++. .+-+.+..|.|.++++++|...|.+.++|+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEec--cccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 457789999999988744 444444 5799999855 5566654 34899999999999999999999999999988
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-----C
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-----C 267 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-----~ 267 (473)
........ .|.++|+.++.+||+..+++|+.|.+|++||..- +
T Consensus 444 ~~l~Eti~--------------------------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 444 ASLVETIR--------------------------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred hhhhhhhh--------------------------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence 76544333 3999999999999999999999999999999741 1
Q ss_pred e--eeEEee-----cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE
Q 012007 268 K--CLESIN-----AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV 339 (473)
Q Consensus 268 ~--~~~~~~-----~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 339 (473)
. .+..+. .-.+.|.|+.++|++ +|+++--|.+++||-++ ...+...+.+|.-+|.||.++||++++
T Consensus 492 t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD------tlKFflsLYGHkLPV~smDIS~DSkli 565 (888)
T KOG0306|consen 492 TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD------TLKFFLSLYGHKLPVLSMDISPDSKLI 565 (888)
T ss_pred ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec------ceeeeeeecccccceeEEeccCCcCeE
Confidence 1 111111 235689999999999 88888899999999886 344567889999999999999999999
Q ss_pred EEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEE
Q 012007 340 YCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLA 417 (473)
Q Consensus 340 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 417 (473)
++|+.|..|++|-+.-+..+ ..+.+|...|+++.+ ...++++++.|+.|+-||-.. ..+++.+.+|...|.|++
T Consensus 566 vTgSADKnVKiWGLdFGDCH-KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k---Fe~iq~L~~H~~ev~cLa 641 (888)
T KOG0306|consen 566 VTGSADKNVKIWGLDFGDCH-KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK---FEEIQKLDGHHSEVWCLA 641 (888)
T ss_pred EeccCCCceEEeccccchhh-hhhhcccCceeEEEEcccceeEEEecCcceEEeechhh---hhhheeeccchheeeeeE
Confidence 99999999999998876555 466789999988765 577899999999999999887 789999999999999999
Q ss_pred EecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 418 VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
..|+|. +++++|.|.+|++|.....
T Consensus 642 v~~~G~-------------~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 642 VSPNGS-------------FVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred EcCCCC-------------eEEeccCCceeEeeeccCc
Confidence 999999 9999999999999998764
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=1.1e-31 Score=239.83 Aligned_cols=255 Identities=21% Similarity=0.267 Sum_probs=218.7
Q ss_pred CccccccccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCC-CeeeEEeeccccccceeEeecCCCcceEEEeecce
Q 012007 151 LKEFSGFKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRK-NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRS 228 (473)
Q Consensus 151 ~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
.+.+..+.+|+..|+++.|.| .+.+|++|+.|+.|+||++... .++..+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf----------------------------- 254 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF----------------------------- 254 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-----------------------------
Confidence 356778999999999999999 8899999999999999999773 332222
Q ss_pred eeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCc
Q 012007 229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 229 ~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~ 306 (473)
.+|..+|..++|+.+|..+++++.|+.|++||+++|+++..+. ....+.|+.++|++ .+++|+.|+.|+.||++
T Consensus 255 ---~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR 330 (503)
T KOG0282|consen 255 ---KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR 330 (503)
T ss_pred ---hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc
Confidence 2599999999999999999999999999999999999999987 45678999999987 89999999999999998
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc--eeecCcceEEEEEecCCEEEEEe
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG--VLRGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~ 384 (473)
.++ +++....|-+.|..+.|-++++.+++.+.|+.++||+.+....... ....|..+.+.+.|+++++++-+
T Consensus 331 s~k------vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 331 SGK------VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred chH------HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence 543 5778888999999999999999999999999999999987554433 34457778888899999999999
Q ss_pred CCCcEEEEecCCCCceeEEEEecCCC--CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGHT--GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
.|+.|.+|.+...-.......+.||. +.-..+.|+||+. +|++|+.||.+.+||..+.+.
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-------------~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-------------TLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC-------------eEEeecCCccEEEeechhhhh
Confidence 99999999987644445556677884 3456789999999 899999999999999987654
No 58
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.7e-31 Score=230.19 Aligned_cols=284 Identities=18% Similarity=0.283 Sum_probs=232.2
Q ss_pred ccceeeeeeecccEEEEEecCC---EEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 113 NGLIGSIVRKEGHIYSLAASGD---LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~g~---~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
..+++.|.||.+.|.|++-+.+ .+|+|+.||.|+|||+. .++..++.|.+.|..|++.. ..+++++.|.+|+.
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 3578899999999999998744 69999999999999976 56889999999999999976 58999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
|.++... .. .+.....+..|.-+..+..+++++. .|.|||....
T Consensus 134 wk~~~~p-~~---------------------------------tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~ 177 (433)
T KOG0268|consen 134 WKIDGPP-LH---------------------------------TILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD 177 (433)
T ss_pred eeccCCc-ce---------------------------------eeeccccccccccccccccccccCc--eeeecccccC
Confidence 9987631 11 1114456677777777888999886 5999999999
Q ss_pred eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC
Q 012007 268 KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 345 (473)
.++..+.-..+.|.++.++|.. .|++|+.|+.|.+||++.... +..... ...-+.|+|+|++..+.+++.|
T Consensus 178 ~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P-----l~KVi~--~mRTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 178 NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP-----LKKVIL--TMRTNTICWNPEAFNFVAANED 250 (433)
T ss_pred CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc-----cceeee--eccccceecCccccceeecccc
Confidence 9999999888899999999986 788888999999999985432 211111 2334679999988889999999
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
..++.||++....+.....+|...|+.+.+ .|+-+++|+.|.+|+||..+.+.......+ .....|.|+.|+-|.+
T Consensus 251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMDSK 328 (433)
T ss_pred ccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEecccc
Confidence 999999999888888899999999988765 599999999999999999987432211111 1234699999999999
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
++++||+|+.|++|.-...+
T Consensus 329 -------------yi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 329 -------------YIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred -------------EEEecCCCcceeeeecchhh
Confidence 99999999999999976543
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=2.9e-30 Score=224.02 Aligned_cols=272 Identities=22% Similarity=0.362 Sum_probs=215.6
Q ss_pred cccceeeeeeecccEEEEEec-----CCEEEEeeCCCcEEEeeCC------ccccccccCcccEEEEEEeCCCCEEEEEe
Q 012007 112 CNGLIGSIVRKEGHIYSLAAS-----GDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIISGDSNKIFTGH 180 (473)
Q Consensus 112 ~~~~~~~l~~h~~~V~~~~~~-----g~~l~tg~~dg~i~vwd~~------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 180 (473)
.+..+..+.||.+.|.++++- ...+++++.|.++++|... +.+..-+||...|.++...++|.++++|+
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence 455678899999999977752 3479999999999999643 33444569999999999999999999999
Q ss_pred CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcc-eEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCE
Q 012007 181 QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKN-YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTL 259 (473)
Q Consensus 181 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v 259 (473)
.|..|+||+................. .+... .....+.......+|.++|.++.|++ ...++++++|.+|
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rr--------k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTI 283 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRR--------KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTI 283 (423)
T ss_pred ccceeeecccCCCccccccccchhhh--------hhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceE
Confidence 99999999944332211111100000 00000 00112233455668999999999987 7789999999999
Q ss_pred EEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-C
Q 012007 260 KVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-A 337 (473)
Q Consensus 260 ~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~ 337 (473)
+.||++++..+..+.. ...++|+..++.. +|++|+.|..|++||.+.+ ......+.+.+|.+.|.++.|+|.. .
T Consensus 284 k~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~---~gs~v~~s~~gH~nwVssvkwsp~~~~ 359 (423)
T KOG0313|consen 284 KVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG---DGSVVSQSLIGHKNWVSSVKWSPTNEF 359 (423)
T ss_pred EEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCC---CCceeEEeeecchhhhhheecCCCCce
Confidence 9999999999888874 4578999998876 8999999999999999865 3445667889999999999999955 6
Q ss_pred EEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCC
Q 012007 338 VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 338 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~ 396 (473)
.|++++.|+++++||++....+...+.+|...|+++.+. +.++++|+.|++|+|+....
T Consensus 360 ~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 360 QLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred EEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecccc
Confidence 788999999999999999887778899999999999997 66999999999999997543
No 60
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-30 Score=248.08 Aligned_cols=275 Identities=20% Similarity=0.274 Sum_probs=200.6
Q ss_pred ccc-cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccc-------------c--ccc-e---------
Q 012007 156 GFK-SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSL-------------P--TFK-D--------- 209 (473)
Q Consensus 156 ~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-------------~--~~~-~--------- 209 (473)
.+. .|.++|.++.|++||+|||+||.||.|+||.+...+.......... | ... .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 7999999999999999999999999999999876322100000000 0 000 0
Q ss_pred ---eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEc
Q 012007 210 ---YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286 (473)
Q Consensus 210 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~ 286 (473)
......-+.....+.......+.||.+.|..|.|+.+ ++|++++.|.+|++|++...+|+..|. |.+.|+|++|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 0000011111122223333445689999999999975 589999999999999999999999997 99999999999
Q ss_pred CCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc---
Q 012007 287 FDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG--- 361 (473)
Q Consensus 287 ~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--- 361 (473)
|-. ++++|+-||.|+||++.. .. +.....-..-|++++|.|+|++.++|+.+|.+++|+.........
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d------~~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISD------KK-VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred ccCCCcEeecccccceEEeecCc------Ce-eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 865 999999999999999852 22 222333347899999999999999999999999999875322111
Q ss_pred -----eeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCC--ceeEEEEecCCCCCcccccC
Q 012007 362 -----VLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTG--PVKCLAVEEDRDHDHEYHQK 431 (473)
Q Consensus 362 -----~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~~~~~~~~ 431 (473)
....|. .|+.|.+. ...|++.+.|..|+|||.+. ..++..++|+.. .=....|+.|++
T Consensus 492 ~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~---~~lv~KfKG~~n~~SQ~~Asfs~Dgk-------- 559 (712)
T KOG0283|consen 492 RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD---KDLVHKFKGFRNTSSQISASFSSDGK-------- 559 (712)
T ss_pred eeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc---hhhhhhhcccccCCcceeeeEccCCC--------
Confidence 111233 67777654 44578888899999999977 566777776533 335678889998
Q ss_pred CCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 432 GDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 432 ~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+|+++++|..|+||++....
T Consensus 560 -----~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 560 -----HIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred -----EEEEeecCceEEEEeCCCCc
Confidence 89999999999999986543
No 61
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=208.15 Aligned_cols=279 Identities=17% Similarity=0.235 Sum_probs=224.2
Q ss_pred eeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc----ccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEe
Q 012007 117 GSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~----~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd 189 (473)
+.+.+|.+.|.+++++ |..|++|+.|++++||++... -....+|.+.|-.++|+|. ...|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5667888999888875 999999999999999987633 2346789999999999875 46899999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
+..+++..... ....=.-+.|+|+|.++++++.|..|.+.|.++.+.
T Consensus 94 ~r~~k~~~~i~---------------------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~ 140 (313)
T KOG1407|consen 94 IRSGKCTARIE---------------------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI 140 (313)
T ss_pred eccCcEEEEee---------------------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccce
Confidence 99887655443 223334578999999999999999999999999888
Q ss_pred eEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcE
Q 012007 270 LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 348 (473)
+...+ ....++.+.|+.++ +++.....|.|.|.... ...+++.+..|.....||.|+|+|++||+|+.|..+
T Consensus 141 ~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp------sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 141 VNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYP------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALV 213 (313)
T ss_pred eehhc-ccceeeeeeecCCCCEEEEecCCceEEEEecc------ccccccccccCCcceEEEEECCCCceEeecccccee
Confidence 77765 34456777776555 77777777999998763 555678899999999999999999999999999999
Q ss_pred EEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCc
Q 012007 349 NFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426 (473)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 426 (473)
.+||++.. .....+..+.-+|..+ +.+|++||+|++|..|-|=++.++ ..+..+ .+.++...++|+|...
T Consensus 214 SLWD~~EL-iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG---d~~~eI-~~~~~t~tVAWHPk~~--- 285 (313)
T KOG1407|consen 214 SLWDVDEL-ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG---DRVWEI-PCEGPTFTVAWHPKRP--- 285 (313)
T ss_pred eccChhHh-hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccC---CeEEEe-eccCCceeEEecCCCc---
Confidence 99999864 4445666677677555 557999999999999999999985 334443 3678899999999987
Q ss_pred ccccCCCccEEEEEeeCC---------CcEEEEEcC
Q 012007 427 EYHQKGDQRWTVYSGSLD---------KSVKVWRVS 453 (473)
Q Consensus 427 ~~~~~~~~~~~l~s~s~D---------g~v~iW~i~ 453 (473)
+||-++.| |.|+++-+.
T Consensus 286 ----------LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 286 ----------LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ----------eeeEEecCCCCccccccceeEEecCC
Confidence 77776654 567777654
No 62
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=3e-30 Score=232.05 Aligned_cols=296 Identities=15% Similarity=0.279 Sum_probs=227.9
Q ss_pred eeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc------cccccc-CcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 117 GSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE------FSGFKS-NSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~------~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
..|.+|...|.++..+ |..|++|+.|-+|++||.... ++.+.. ....|++++|++.|..|++.+.....+|
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 4577788888888765 889999999999999996532 223322 3568999999999999999888899999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~ 266 (473)
+|-+.........-. .|+ .......||...++|.+|+|. ...+++++.||++++||+.+
T Consensus 241 ~DRdG~~~~e~~KGD----------------QYI----~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGD----------------QYI----RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred EccCCceeeeeeccc----------------hhh----hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence 998765433222110 000 011223369999999999994 56899999999999999986
Q ss_pred Cee-eEEee-----cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc--cEEEEEEccCCC
Q 012007 267 CKC-LESIN-----AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN--AVTALAVNQESA 337 (473)
Q Consensus 267 ~~~-~~~~~-----~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~ 337 (473)
.+. +..++ +..-.++.++|++++ +|++|+.||.|.+|+.... ...........|.. .|++|+|+++|+
T Consensus 301 ~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~---~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 301 TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSR---TVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred chhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCc---ccccceEeeeccCCCCceeEEEeccccc
Confidence 543 23332 234478899999998 8999999999999997532 22333445567776 899999999999
Q ss_pred EEEEeCCCCcEEEEecCCccccccee----ecCcceEEEEEecCCEEEEEeC------CCcEEEEecCCCCceeEEEEec
Q 012007 338 VVYCGSSDGLVNFWECEKHLSHGGVL----RGHKMAVLCLAAAGNLVFSGSA------DRNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 338 ~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~ 407 (473)
+|++-+.|+.+++||++...++.... ......-+||+|+.++|++|.. .|.+++||..+ ...++.+.
T Consensus 378 ~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t---~d~v~ki~ 454 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT---LDTVYKID 454 (641)
T ss_pred hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc---eeeEEEec
Confidence 99999999999999999866554333 3344566899999999999864 57899999988 67777777
Q ss_pred CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 408 ~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
-....|..+.|+|.-+ .|+.|+.||.++||=
T Consensus 455 i~~aSvv~~~WhpkLN-------------Qi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 455 ISTASVVRCLWHPKLN-------------QIFAGSGDGTAHVYY 485 (641)
T ss_pred CCCceEEEEeecchhh-------------heeeecCCCceEEEE
Confidence 7788899999999987 688888899999864
No 63
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=7.2e-30 Score=237.40 Aligned_cols=278 Identities=27% Similarity=0.467 Sum_probs=232.6
Q ss_pred ccceeeeeeecccEEEEEec-CCEEEEeeCCCcEEEeeCC-cc---ccccccCcccEEE-EEEeC-CCCEEEEEeCCCeE
Q 012007 113 NGLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL-KE---FSGFKSNSGLVKA-IIISG-DSNKIFTGHQDGKI 185 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~-~~---~~~~~~h~~~V~~-l~~s~-~~~~l~s~~~dg~i 185 (473)
.++..++.+|...|..+... +..+++++.||++++|+-. +. ...+.+|.+.|.+ +++-+ ++-.|++|+.|+.|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred ceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 45677899999999888765 6679999999999999853 22 3457778888877 88875 44469999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
.+|........... .+|...|.|+....++. +++|++|.++++|..
T Consensus 84 ~v~~~~~~~P~~~L--------------------------------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~- 129 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTL--------------------------------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI- 129 (745)
T ss_pred EEEecCCCCchhhh--------------------------------hccccceeeeecCCcCc-eEecccccceEEecc-
Confidence 99999877643322 36999999999888877 999999999999974
Q ss_pred CCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC
Q 012007 266 DCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345 (473)
Q Consensus 266 ~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 345 (473)
+++...+++|...|+++...|++.+++|+.|.+|++|.- ......+.+|...|..+++-+++. +++++.|
T Consensus 130 -~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--------~~~l~tf~gHtD~VRgL~vl~~~~-flScsND 199 (745)
T KOG0301|consen 130 -GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--------GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSND 199 (745)
T ss_pred -hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--------CchhhhhccchhheeeeEEecCCC-eEeecCC
Confidence 566777999999999999999999999999999999964 335678899999999999998765 5689999
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
|.|++|++... ....+.+|...+.+++ .++..++++++|++++||+.. .+.+.+.-....|+++.+-+++.
T Consensus 200 g~Ir~w~~~ge--~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~NgD 272 (745)
T KOG0301|consen 200 GSIRLWDLDGE--VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLNGD 272 (745)
T ss_pred ceEEEEeccCc--eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEEEecCccceEEEEEeeCCC
Confidence 99999999543 3347789999998887 468899999999999999876 56666665566899999999987
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
+++|+.||.||||.....
T Consensus 273 --------------Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 273 --------------IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred --------------EEEeccCceEEEEEeccc
Confidence 899999999999998743
No 64
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.5e-30 Score=245.48 Aligned_cols=243 Identities=21% Similarity=0.376 Sum_probs=191.3
Q ss_pred eeeee-eecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc----------------------------------------
Q 012007 116 IGSIV-RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK---------------------------------------- 152 (473)
Q Consensus 116 ~~~l~-~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~---------------------------------------- 152 (473)
.+.+. .|.|.|+++.| ||+|||+||.||.|+||.+.+
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 44566 89999999876 599999999999999995422
Q ss_pred ----------------------cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccccee
Q 012007 153 ----------------------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDY 210 (473)
Q Consensus 153 ----------------------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (473)
++..+++|.+.|..|.|+.++ +|++++.|.+||+|++...++...+.
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~---------- 407 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS---------- 407 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe----------
Confidence 123378999999999999776 99999999999999999887766554
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~ 289 (473)
|.+.|+|++|+| |.++|++|+-||.|+||++...+.+.-... .+.|+++++.|+|
T Consensus 408 -----------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdG 463 (712)
T KOG0283|consen 408 -----------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDG 463 (712)
T ss_pred -----------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCC
Confidence 999999999999 889999999999999999988776655444 4789999999999
Q ss_pred -EEEEEeCCCcEEEEeCcccCCCcceeeee---eeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccccceee
Q 012007 290 -LVFTGSADGTVKVWRRELQGKGTKHCLAQ---VLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSHGGVLR 364 (473)
Q Consensus 290 -~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 364 (473)
..+.|+.+|.+++|+.+.........+.. .-..|. .|+.+.|.|.. ..|++.+.|..|+|||.+... +...++
T Consensus 464 k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfK 541 (712)
T KOG0283|consen 464 KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-LVHKFK 541 (712)
T ss_pred ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh-hhhhhc
Confidence 88899999999999986322111100000 011233 79999999844 467788999999999997533 223444
Q ss_pred cCc----ceEEEEEecCCEEEEEeCCCcEEEEecC
Q 012007 365 GHK----MAVLCLAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 365 ~~~----~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
|+. ..-..|+.||++|+++++|..|++|+..
T Consensus 542 G~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 542 GFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 332 3335677799999999999999999974
No 65
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=6.8e-29 Score=227.95 Aligned_cols=249 Identities=28% Similarity=0.460 Sum_probs=208.6
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
+..+++|.+.|.+++|+|++++|++++.||.|++|++.+.+...... .
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--------------------------------~ 49 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--------------------------------G 49 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe--------------------------------c
Confidence 34677899999999999999999999999999999998765322221 3
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
|...+..+.|.+++++|++++.||.|++||+.+++.+..+..|...+.++.+.+++ ++++++.||.|.+||++..
T Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 125 (289)
T cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG---- 125 (289)
T ss_pred CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----
Confidence 77888999999999999999999999999999988888999999999999999986 6666666999999999632
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNIC 390 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 390 (473)
.....+..|...+.+++|+|++.++++++.|+.|++||++.... ...+..|...+.++.+ +++.+++++.|+.|+
T Consensus 126 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 126 --KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred --EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc-ceeEecCccccceEEECCCcCEEEEecCCCcEE
Confidence 23344557888999999999999999998899999999986543 3455577767766654 566899999999999
Q ss_pred EEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+||+.. ...+..+..|...|.+++|++++. ++++++.||.|++|++..+..
T Consensus 203 i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~i~i~~~~~~~~ 253 (289)
T cd00200 203 LWDLST---GKCLGTLRGHENGVNSVAFSPDGY-------------LLASGSEDGTIRVWDLRTGEC 253 (289)
T ss_pred EEECCC---CceecchhhcCCceEEEEEcCCCc-------------EEEEEcCCCcEEEEEcCCcee
Confidence 999987 466777778899999999999976 788888899999999986544
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-30 Score=213.70 Aligned_cols=235 Identities=22% Similarity=0.264 Sum_probs=201.0
Q ss_pred cccEEEEEec---CCEEEEeeCCCcEEEeeCC---ccccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCe
Q 012007 123 EGHIYSLAAS---GDLLYTGSDSKNIRVWKNL---KEFSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 123 ~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~---~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
++.+..++++ .+.+++++.||.++|||+. +++..++.|...|.++.|++- +..+++++.|++|++|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 4667777776 5689999999999999965 678899999999999999885 45678889999999999987765
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
+..+. +|...|...+|+| ..+++++++.|+++++||++.......+.
T Consensus 140 v~Tf~--------------------------------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ 187 (311)
T KOG0277|consen 140 VQTFN--------------------------------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE 187 (311)
T ss_pred eEeec--------------------------------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE
Confidence 55433 5999999999999 68899999999999999998654444499
Q ss_pred cCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeCCCCcEEEE
Q 012007 275 AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGSSDGLVNFW 351 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iw 351 (473)
.|...+.|+.|+.-+ .+++|+.|+.|++||++ .-..++..+.+|.-+|..++|+|. ..+|++++.|-+++||
T Consensus 188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir-----~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw 262 (311)
T KOG0277|consen 188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIR-----NLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIW 262 (311)
T ss_pred eccceeEeecccccCCcEEEecCCCceEEEEehh-----hccccceeecCCceEEEEEecCcchhhHhhhccccceEEec
Confidence 999999999998654 89999999999999998 444567788999999999999995 4789999999999999
Q ss_pred ecCCcccccceeecCcceEEEEEe---cCCEEEEEeCCCcEEEEec
Q 012007 352 ECEKHLSHGGVLRGHKMAVLCLAA---AGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~ 394 (473)
|...+.........|..-+..+.+ ++.++|+++.|+.++||+.
T Consensus 263 ~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 263 DPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 998777777777788888877765 4889999999999999974
No 67
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-28 Score=208.64 Aligned_cols=281 Identities=22% Similarity=0.327 Sum_probs=222.8
Q ss_pred ecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCCe
Q 012007 122 KEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ--DGKIRIWKVSRKNA 195 (473)
Q Consensus 122 h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~--dg~i~vwd~~~~~~ 195 (473)
..+.|.++.++ |.+|++++.|.+++|||.. +.++.+..+.-.|..++|....+.++.++. |.+||.-++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 46677788775 9999999999999999966 556677777778999999877777777776 88999999998887
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA 275 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 275 (473)
+..+. ||...|..|+.+|-+..+++++.|++|++||++..++...+..
T Consensus 93 lRYF~--------------------------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~ 140 (311)
T KOG1446|consen 93 LRYFP--------------------------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL 140 (311)
T ss_pred EEEcC--------------------------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec
Confidence 66554 6999999999999999999999999999999998888777764
Q ss_pred CCCceeEEEEcCCCEE-EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 276 HDDAINSVVAGFDSLV-FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 276 ~~~~v~~l~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
... ..+++.|+|++ +++.....|++||++..+++...... ...+.....+.|.|+|+|++++.++..+.+++.|.-
T Consensus 141 ~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~-i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 141 SGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFS-ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF 217 (311)
T ss_pred CCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEc-cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc
Confidence 443 34688999954 45555559999999976654433322 222556788999999999999999999999999987
Q ss_pred CcccccceeecCcc-----eEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC-CCCceeEEEEecCCCCCccc
Q 012007 355 KHLSHGGVLRGHKM-----AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG-HTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 355 ~~~~~~~~~~~~~~-----~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~ 428 (473)
++... ..+.++.. .-.++.|+++++++|+.||+|.+|++++ ...+..+.+ +.+++.++.|+|...
T Consensus 218 ~G~~~-~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t---g~~v~~~~~~~~~~~~~~~fnP~~~----- 288 (311)
T KOG1446|consen 218 DGTVK-STFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET---GKKVAVLRGPNGGPVSCVRFNPRYA----- 288 (311)
T ss_pred CCcEe-eeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC---CcEeeEecCCCCCCccccccCCcee-----
Confidence 66533 33333332 2367789999999999999999999988 566777777 789999999999865
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+++|++ ..+.+|=....+
T Consensus 289 --------mf~sa~--s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 289 --------MFVSAS--SNLVFWLPDEDA 306 (311)
T ss_pred --------eeeecC--ceEEEEeccccc
Confidence 666664 578888766443
No 68
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=7.3e-30 Score=220.47 Aligned_cols=261 Identities=19% Similarity=0.282 Sum_probs=211.6
Q ss_pred CccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 151 LKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 151 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
...+..|..|+..|.+++.+|+.++++||+.|..-.+|++.++......
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el------------------------------- 102 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL------------------------------- 102 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-------------------------------
Confidence 4456788999999999999999999999999999999999998743322
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccC
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~ 309 (473)
.+|.+.|+|+.|+.+|.+|++|+.+|.|+||+..++.....+...-..+.=+.|+|.+ .|++|+.||.+-+|.+..
T Consensus 103 -tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~-- 179 (399)
T KOG0296|consen 103 -TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS-- 179 (399)
T ss_pred -cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCC--
Confidence 2599999999999999999999999999999999999888887566677788999987 888999999999999863
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee--------------------ecCc--
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL--------------------RGHK-- 367 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~-- 367 (473)
....+.+.+|..++++=.|.|+|+.++++..||+|++|++.++....... .+..
T Consensus 180 ----~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~ 255 (399)
T KOG0296|consen 180 ----QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG 255 (399)
T ss_pred ----cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCc
Confidence 24567889999999999999999999999999999999998754332211 0000
Q ss_pred ---------ce-EEEEEe-----------------------cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCcee
Q 012007 368 ---------MA-VLCLAA-----------------------AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414 (473)
Q Consensus 368 ---------~~-v~~~~~-----------------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~ 414 (473)
+. +.|..+ .=.+.|+|+-||+|.|||+.. ..++..-.|..+|+
T Consensus 256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~----~~~R~~c~he~~V~ 331 (399)
T KOG0296|consen 256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA----STLRHICEHEDGVT 331 (399)
T ss_pred cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc----chhheeccCCCceE
Confidence 00 011110 114788999999999999987 34555567899999
Q ss_pred EEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCCccc
Q 012007 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSPTQ 467 (473)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~~~~ 467 (473)
.+.|.+ .. +|++++.||.|+.||...+........+...
T Consensus 332 ~l~w~~-t~-------------~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 332 KLKWLN-TD-------------YLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred EEEEcC-cc-------------hheeeccCceEEeeeccccceEEEEecCchh
Confidence 999999 44 7999999999999999999876655444433
No 69
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=4.3e-30 Score=217.26 Aligned_cols=286 Identities=17% Similarity=0.320 Sum_probs=222.7
Q ss_pred eeeeeecccEEE--EEecCCEEEEeeCCCcEEEeeCCc--------------------cccccccCcccEEEEEEeCCCC
Q 012007 117 GSIVRKEGHIYS--LAASGDLLYTGSDSKNIRVWKNLK--------------------EFSGFKSNSGLVKAIIISGDSN 174 (473)
Q Consensus 117 ~~l~~h~~~V~~--~~~~g~~l~tg~~dg~i~vwd~~~--------------------~~~~~~~h~~~V~~l~~s~~~~ 174 (473)
..+..|++.+.+ +++||.++|||+.|-.|+|.|+.+ .++++..|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 456678887766 556799999999999999998641 1445677999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe
Q 012007 175 KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS 254 (473)
Q Consensus 175 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s 254 (473)
.|++|+.|++|+++|+........++. +....+|.+|.|+|.|.+|++|.
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~------------------------------~qd~~~vrsiSfHPsGefllvgT 235 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKV------------------------------FQDTEPVRSISFHPSGEFLLVGT 235 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHH------------------------------hhccceeeeEeecCCCceEEEec
Confidence 999999999999999976543322221 12567899999999999999999
Q ss_pred CCCCEEEEEcCCCeeeEEe---ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCC-ccEEE
Q 012007 255 WDKTLKVWRISDCKCLESI---NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHE-NAVTA 329 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~---~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~v~~ 329 (473)
...++++||+++.++...- ..|.+.|+++.+++.+ +.++++.||.|++||-- ...+....-..|. ..|.+
T Consensus 236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-----S~rCv~t~~~AH~gsevcS 310 (430)
T KOG0640|consen 236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-----SNRCVRTIGNAHGGSEVCS 310 (430)
T ss_pred CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc-----cHHHHHHHHhhcCCceeee
Confidence 9999999999999887654 3688999999999988 78899999999999964 3444444455565 46899
Q ss_pred EEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc-ce---E--EEEEecCCEEEEEe-CCCcEEEEecCCCCceeE
Q 012007 330 LAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK-MA---V--LCLAAAGNLVFSGS-ADRNICLWRREESGAHSC 402 (473)
Q Consensus 330 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~---v--~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~ 402 (473)
..|..+++++++.+.|..+++|.+.++..+........ +. - ..|.....|++.-. ..+.++-||.++.....+
T Consensus 311 a~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 311 AVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred EEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence 99999999999999999999999988765543322211 10 0 11223355555443 356799999998533222
Q ss_pred EEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 403 LAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 403 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
.-.+|++.+..+.-+|.+. .|.||+.|..+++|--
T Consensus 391 --~slgHn~a~R~i~HSP~~p-------------~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 391 --LSLGHNGAVRWIVHSPVEP-------------AFMTCSDDFRARFWYR 425 (430)
T ss_pred --cccCCCCCceEEEeCCCCC-------------ceeeecccceeeeeee
Confidence 2348999999999999998 8999999999999964
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=7.4e-30 Score=249.28 Aligned_cols=295 Identities=20% Similarity=0.275 Sum_probs=225.8
Q ss_pred ccEEEE--EecCCEEEEee--CCCcEEEeeCC--------------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeE
Q 012007 124 GHIYSL--AASGDLLYTGS--DSKNIRVWKNL--------------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKI 185 (473)
Q Consensus 124 ~~V~~~--~~~g~~l~tg~--~dg~i~vwd~~--------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 185 (473)
..|.++ .++|..+|||+ .||.++||+.. +.+.....|.+.|+|+.|++||++||+|+.|+.|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV 93 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence 445554 47799999999 89999999532 3355667899999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEE-eecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEV-RRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
.||+...... ....+. ....... .-.....+.+|...|..++|+|++.+|++++.|++|.|||.
T Consensus 94 ~iW~~~~~~~--~~~fgs-------------~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 94 MIWERAEIGS--GTVFGS-------------TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred EEeeecccCC--cccccc-------------cccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcc
Confidence 9999874100 000000 0000000 11122345569999999999999999999999999999999
Q ss_pred CCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeecc------CCccEEEEEEccCCC
Q 012007 265 SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK------HENAVTALAVNQESA 337 (473)
Q Consensus 265 ~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~ 337 (473)
.+.+.+..+++|...|..+.|.|-| +|++-+.|++|+||++.. ....+.+.+ ...-...+.|+|||.
T Consensus 159 ~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d------w~i~k~It~pf~~~~~~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 159 KTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD------WGIEKSITKPFEESPLTTFFLRLSWSPDGH 232 (942)
T ss_pred ccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc------ceeeEeeccchhhCCCcceeeecccCCCcC
Confidence 9999999999999999999999998 899999999999999652 112222222 234578899999999
Q ss_pred EEEEeCC----CCcEEEEecCCcccccceeecCcceEEEEEec---------------CC----EEEEEeCCCcEEEEec
Q 012007 338 VVYCGSS----DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA---------------GN----LVFSGSADRNICLWRR 394 (473)
Q Consensus 338 ~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---------------~~----~l~s~~~dg~i~iwd~ 394 (473)
+|++... -.++.|.+-.+ ......+.||..++.++.++ ++ .+|+|+.|++|-||..
T Consensus 233 ~las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 233 HLASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred eecchhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 9998643 34688888754 45556788999999888764 11 6889999999999998
Q ss_pred CCCCceeEEEEe-cCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 395 EESGAHSCLAVL-TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 395 ~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
... +++... .-....|.+++|+|||- .|+.+|.||+|.+..+++.+
T Consensus 312 ~~~---RPl~vi~~lf~~SI~DmsWspdG~-------------~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 312 ALP---RPLFVIHNLFNKSIVDMSWSPDGF-------------SLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCC---CchhhhhhhhcCceeeeeEcCCCC-------------eEEEEecCCeEEEEEcchHH
Confidence 663 333332 22356899999999998 79999999999999998643
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1e-30 Score=229.01 Aligned_cols=278 Identities=21% Similarity=0.352 Sum_probs=225.9
Q ss_pred eeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 117 GSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
..+..|.+.|..+.|- ...|++|+.|..|++|++. ....++.+..+.|+.+.|.++++++++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 3456788888887764 5799999999999999865 245677788899999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
.......... +|.+.|+++.|......+++|+.|.+|++||+....|.
T Consensus 249 d~~r~~~TLs--------------------------------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 249 DSLRLRHTLS--------------------------------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred cchhhhhhhc--------------------------------ccccceeeehhhccccceeeccccchhhhhhhhhhhee
Confidence 8876543332 59999999999887777999999999999999998888
Q ss_pred EEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 271 ESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
.++. ....+..|+.. ...+++|-.|++|++||.+.... ...... .+.|+++..++++..|++++.|.++.+
T Consensus 297 kt~l-~~S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~------~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~v 367 (459)
T KOG0288|consen 297 KTVL-PGSQCNDIVCS-ISDVISGHFDKKVRFWDIRSADK------TRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKV 367 (459)
T ss_pred cccc-ccccccceEec-ceeeeecccccceEEEeccCCce------eeEeec-CcceeeEeeccCCeEEeeecCCCceee
Confidence 7765 33456666655 44788999999999999874332 233333 348999999999999999999999999
Q ss_pred EecCCccccc-----ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCC--ceeEEEEecCCC
Q 012007 351 WECEKHLSHG-----GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTG--PVKCLAVEEDRD 423 (473)
Q Consensus 351 wd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~ 423 (473)
.|+++..... ....+|.-.-.+|+|++.|+++|+.||.|+||++.+ .++...+..... .|++++|+|.|.
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t---gKlE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT---GKLEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccC---ceEEEEeccCCCCcceEEEEEcCCCc
Confidence 9998743321 233456666788999999999999999999999999 455555554433 599999999998
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
.|++++.++.+.+|.
T Consensus 445 -------------~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 445 -------------GLLSADKQKAVTLWT 459 (459)
T ss_pred -------------hhhcccCCcceEecC
Confidence 799999999999994
No 72
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8e-29 Score=210.17 Aligned_cols=263 Identities=18% Similarity=0.308 Sum_probs=206.2
Q ss_pred EEEeeCCCcEEEeeCC--------------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEee
Q 012007 136 LYTGSDSKNIRVWKNL--------------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRV 201 (473)
Q Consensus 136 l~tg~~dg~i~vwd~~--------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 201 (473)
|++|++...|.-+++. ..+-.+..|.++|++++. ++.++|+|+.|-+|+|||+.........
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l-- 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL-- 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcce--
Confidence 5666666655555422 123456789999999999 5779999999999999999876543322
Q ss_pred ccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC--EEEEEeCCCCEEEEEcCCCeeeEEeecCCCc
Q 012007 202 GSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG--LLYSGSWDKTLKVWRISDCKCLESINAHDDA 279 (473)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 279 (473)
..|.+.|+++.|.+.-. .|++|+.||.|.+|+....+++..+++|.+.
T Consensus 80 ------------------------------l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 80 ------------------------------LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ 129 (362)
T ss_pred ------------------------------eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc
Confidence 24999999999998654 8999999999999999999999999999999
Q ss_pred eeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc
Q 012007 280 INSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS 358 (473)
Q Consensus 280 v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 358 (473)
|+.++++|.+ +-++.+.|+.+++||+-.+.... ...-....+.+.|+|.|.+++.+..+ .|-+|.++....
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~-------v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v 201 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF-------VLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASV 201 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhcCccce-------eeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhH
Confidence 9999999999 56688999999999986443211 11112233449999999988888765 589998876444
Q ss_pred ccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEE
Q 012007 359 HGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWT 437 (473)
Q Consensus 359 ~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~ 437 (473)
..... ....+.|+.+. +..|++|+.|+.|.+||.++ ..++..+.+|...|.++.+-.+..+ .+
T Consensus 202 ~~~i~--~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds---~~~~~~~~AH~~RVK~i~~~~~~~~-----------~~ 265 (362)
T KOG0294|consen 202 FREIE--NPKRILCATFLDGSELLVGGDNEWISLKDTDS---DTPLTEFLAHENRVKDIASYTNPEH-----------EY 265 (362)
T ss_pred hhhhh--ccccceeeeecCCceEEEecCCceEEEeccCC---CccceeeecchhheeeeEEEecCCc-----------eE
Confidence 33222 22456777764 88999999999999999987 6788899999999999996554321 18
Q ss_pred EEEeeCCCcEEEEEcCCCC
Q 012007 438 VYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 438 l~s~s~Dg~v~iW~i~~~~ 456 (473)
|+|+|.||.|+|||+....
T Consensus 266 lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 266 LVTASSDGFIKVWDIDMET 284 (362)
T ss_pred EEEeccCceEEEEEccccc
Confidence 9999999999999998763
No 73
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2.4e-30 Score=212.48 Aligned_cols=247 Identities=22% Similarity=0.360 Sum_probs=210.0
Q ss_pred cccceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 112 CNGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 112 ~~~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
.+..++++.+|.|.|++-..+ ....|+++.|-+-+|||.. ..+..|. |..-|.+++|+.|.++|++|+.++.+||
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrv 126 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRV 126 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhh
Confidence 356899999999999998876 4478899999999999954 4555554 8889999999999999999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
+|++..+......- +|.+.|..+.|....+.+++.+.|++|++||.+++
T Consensus 127 fdln~p~App~E~~-------------------------------ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg 175 (334)
T KOG0278|consen 127 FDLNRPKAPPKEIS-------------------------------GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG 175 (334)
T ss_pred hhccCCCCCchhhc-------------------------------CCCCcceeEEEeccCceEEeeccCCceEEEEeccC
Confidence 99987664332221 49999999999998889999999999999999999
Q ss_pred eeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 268 KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
..++++. ....|+++.+++++.+++....+.|.+||....+. .....-...|.+..++|+..++++|+.|..
T Consensus 176 t~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~-------lKs~k~P~nV~SASL~P~k~~fVaGged~~ 247 (334)
T KOG0278|consen 176 TEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL-------LKSYKMPCNVESASLHPKKEFFVAGGEDFK 247 (334)
T ss_pred cEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccc-------eeeccCccccccccccCCCceEEecCcceE
Confidence 9999997 45689999999999999999999999999864321 112233567899999999999999999999
Q ss_pred EEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCC
Q 012007 348 VNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
++.||..++.......++|.++|.|+. |+|...++|+.||+|+||.+..++
T Consensus 248 ~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 248 VYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999999998887666789999998765 679999999999999999987643
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=220.88 Aligned_cols=275 Identities=21% Similarity=0.322 Sum_probs=225.2
Q ss_pred cccEEEEEecC----CEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCee
Q 012007 123 EGHIYSLAASG----DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNAS 196 (473)
Q Consensus 123 ~~~V~~~~~~g----~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 196 (473)
...|.+++++. ++.+|++. .+.||+.. ...+.+.-....|.++.|..||++|+.|+..|.|+|+|+.+....
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 45677777774 46666654 78999854 334455556788999999999999999999999999996653322
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeec
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINA 275 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 275 (473)
.... .|..+|..+.|+| ++..|++|+.|+.+++||+.+......+.+
T Consensus 104 R~~~--------------------------------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ 151 (487)
T KOG0310|consen 104 RQLY--------------------------------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG 151 (487)
T ss_pred HHHh--------------------------------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC
Confidence 2221 4999999999999 566788899999999999999888778999
Q ss_pred CCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 276 HDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 276 ~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
|.+.|.|.+++|.. .+++|+.||.|++||++... .......|..+|..+.+-|.|..+++++. ..|++||+
T Consensus 152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl 224 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDL 224 (487)
T ss_pred CcceeEeeccccCCCeEEEecCCCceEEEEEeccCC------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEe
Confidence 99999999999875 89999999999999998432 23455679999999999999999988764 57999999
Q ss_pred CCcccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccC
Q 012007 354 EKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQK 431 (473)
Q Consensus 354 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~ 431 (473)
-++.+.......|...|+|+... +..|++|+-|+.|++||+.+ .+.+..+. ..++|.+++.+|+++
T Consensus 225 ~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~---~Kvv~s~~-~~~pvLsiavs~dd~-------- 292 (487)
T KOG0310|consen 225 TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN---YKVVHSWK-YPGPVLSIAVSPDDQ-------- 292 (487)
T ss_pred cCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccc---eEEEEeee-cccceeeEEecCCCc--------
Confidence 97777766666799999998764 69999999999999999877 67777765 478999999999988
Q ss_pred CCccEEEEEeeCCCcEEEEEcCCC
Q 012007 432 GDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 432 ~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.++.|-.||.+.+-+....
T Consensus 293 -----t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 293 -----TVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred -----eEEEecccceeeeehhhcc
Confidence 7999999999888755443
No 75
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.4e-28 Score=235.66 Aligned_cols=234 Identities=19% Similarity=0.268 Sum_probs=178.1
Q ss_pred ccccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 156 GFKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
.+.+|.+.|.+++|+| ++++|++|+.||+|++||+......... ......+.+|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~-------------------------~~~l~~L~gH 124 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI-------------------------SDPIVHLQGH 124 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc-------------------------CcceEEecCC
Confidence 4778999999999999 8889999999999999999765321000 0001123359
Q ss_pred cCCeeEEEEcCCC-CEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 235 YDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 235 ~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
...|.+++|+|++ ++|++|+.|++|+|||+++++.+..+..|...|.+++|++++ +|++++.|+.|++||++.+.
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~--- 201 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT--- 201 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc---
Confidence 9999999999975 699999999999999999999999999999999999999998 89999999999999997432
Q ss_pred ceeeeeeeccCCcc-EEEEEEccCCCEEEEeC----CCCcEEEEecCCcccccceeecCc-ceE--EEEEecCCEEEEEe
Q 012007 313 KHCLAQVLLKHENA-VTALAVNQESAVVYCGS----SDGLVNFWECEKHLSHGGVLRGHK-MAV--LCLAAAGNLVFSGS 384 (473)
Q Consensus 313 ~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~-~~v--~~~~~~~~~l~s~~ 384 (473)
....+..|... +..+.|.+++..+++++ .|+.|++||+++..........+. ..+ ..+++++++|++|+
T Consensus 202 ---~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 202 ---IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred ---EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 24455667654 45678888877776653 478999999987544433332222 222 34566789998887
Q ss_pred -CCCcEEEEecCCCCceeEEEEec-CCCCceeEEEEecCCC
Q 012007 385 -ADRNICLWRREESGAHSCLAVLT-GHTGPVKCLAVEEDRD 423 (473)
Q Consensus 385 -~dg~i~iwd~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~ 423 (473)
.|+.|++||+.++ .++.... .+..++.+++|.|...
T Consensus 279 kgDg~Iriwdl~~~---~~~~~~~~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 279 KGEGNIRCFELMNE---RLTFCSSYSSVEPHKGLCMMPKWS 316 (493)
T ss_pred eCCCeEEEEEeeCC---ceEEEeeccCCCCCcceEeccccc
Confidence 5999999999984 3333332 3556788999999754
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-28 Score=229.61 Aligned_cols=265 Identities=24% Similarity=0.382 Sum_probs=218.8
Q ss_pred CCEEEEeeCCCcEEEeeCCcc-cc-ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccccee
Q 012007 133 GDLLYTGSDSKNIRVWKNLKE-FS-GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDY 210 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~-~~-~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (473)
.+.||+|.. ..|++|+.... +. ....+...|+++.|+++|++|++|..+|.|.|||....+.......
T Consensus 188 ~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~--------- 257 (484)
T KOG0305|consen 188 ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG--------- 257 (484)
T ss_pred CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC---------
Confidence 557777775 58999986532 22 2233488999999999999999999999999999987765444432
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE-eecCCCceeEEEEcCCC
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-INAHDDAINSVVAGFDS 289 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~~~~~ 289 (473)
.|...|.+++|. +..+.+|+.|+.|..+|++..+.+.. +.+|...|..+.|++++
T Consensus 258 ----------------------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~ 313 (484)
T KOG0305|consen 258 ----------------------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG 313 (484)
T ss_pred ----------------------CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC
Confidence 288999999998 67899999999999999998776655 88999999999999998
Q ss_pred -EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEe--CCCCcEEEEecCCcccccceeec
Q 012007 290 -LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCG--SSDGLVNFWECEKHLSHGGVLRG 365 (473)
Q Consensus 290 -~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~ 365 (473)
++++|+.|+.+.|||.. ...+...+..|..+|.+++|+| ...+||+| +.|+.|++||..++........+
T Consensus 314 ~~lASGgnDN~~~Iwd~~------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 314 NQLASGGNDNVVFIWDGL------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred CeeccCCCccceEeccCC------CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC
Confidence 99999999999999984 3345678889999999999999 56788886 46999999999987776555544
Q ss_pred CcceEEEEEe--cCCEEEE--EeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 366 HKMAVLCLAA--AGNLVFS--GSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 366 ~~~~v~~~~~--~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
. .|+.+.| ..+-|++ |..++.|.||+..+ ...+..+.+|...|..++++||+. .+++|
T Consensus 388 s--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps---~~~~~~l~gH~~RVl~la~SPdg~-------------~i~t~ 449 (484)
T KOG0305|consen 388 S--QVCSLIWSKKYKELLSTHGYSENQITLWKYPS---MKLVAELLGHTSRVLYLALSPDGE-------------TIVTG 449 (484)
T ss_pred C--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccc---cceeeeecCCcceeEEEEECCCCC-------------EEEEe
Confidence 4 4555555 4443554 34677899999998 788999999999999999999998 89999
Q ss_pred eCCCcEEEEEcCCC
Q 012007 442 SLDKSVKVWRVSEH 455 (473)
Q Consensus 442 s~Dg~v~iW~i~~~ 455 (473)
+.|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999999875
No 77
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=3.4e-28 Score=218.22 Aligned_cols=276 Identities=18% Similarity=0.302 Sum_probs=224.6
Q ss_pred eeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc-----ccccc--cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 120 VRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE-----FSGFK--SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 120 ~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~-----~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
..|..-|.++..+ .+.++||+. |.|+|||+... +..+. ...+-|.++.+.|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 4677878887765 668999997 78999997643 22222 23567999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
..........+.+ ..-.+..++.+||.+..+++..||.|.|||+.+...+
T Consensus 495 AapTprikaelts------------------------------sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 495 AAPTPRIKAELTS------------------------------SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred cCCCcchhhhcCC------------------------------cchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 8765433322211 3346778999999999999999999999999999999
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
+.|++|.+.+.||.++++| .|.+|+-|.+|+.||++.+.+.. .....+.|.++.+.|++.+|++|..++.+.
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq-------qhdF~SQIfSLg~cP~~dWlavGMens~ve 617 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-------QHDFSSQIFSLGYCPTGDWLAVGMENSNVE 617 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh-------hhhhhhhheecccCCCccceeeecccCcEE
Confidence 9999999999999999999 89999999999999998543211 122357899999999999999999999999
Q ss_pred EEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcc
Q 012007 350 FWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 427 (473)
+.......+ ..+.-|...|+++. +.|+++++.+.|+.+..|....+ ..+..... ...|.++.++.|.+
T Consensus 618 vlh~skp~k--yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqskE-~SsVlsCDIS~ddk---- 687 (705)
T KOG0639|consen 618 VLHTSKPEK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSKE-SSSVLSCDISFDDK---- 687 (705)
T ss_pred EEecCCccc--eeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeeccc-cCcceeeeeccCce----
Confidence 988776444 35666888887765 46999999999999999998773 44444433 57899999999998
Q ss_pred cccCCCccEEEEEeeCCCcEEEEEc
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
+|+||+.|+...||.+
T Consensus 688 ---------yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 688 ---------YIVTGSGDKKATVYEV 703 (705)
T ss_pred ---------EEEecCCCcceEEEEE
Confidence 9999999999999876
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.4e-29 Score=220.83 Aligned_cols=273 Identities=22% Similarity=0.366 Sum_probs=221.4
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
+..+..|.-+|.++++++++.++++++.||+|.-|++.++.......... ....... ..... .. .+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-----ev~k~~~-----~~~k~---~r-~~ 200 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-----EVLKSHG-----NPLKE---SR-KG 200 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-----hhhhhcc-----CCCCc---cc-cc
Confidence 56677899999999999999999999999999999999887542221110 0000000 00000 00 25
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
|...+.+++.++|+++|++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-... .+++++.|+.|++|+++
T Consensus 201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~------ 274 (479)
T KOG0299|consen 201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID------ 274 (479)
T ss_pred ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehh------
Confidence 99999999999999999999999999999999999999999999999999997664 89999999999999985
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe-cCCEEEEEeCCCcEEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA-AGNLVFSGSADRNICL 391 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~i 391 (473)
....+.++.+|.+.|.+|....-++.+-+|+.|+++++|++... ...++.++...+-|+++ +...+++|+.||.|.+
T Consensus 275 ~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 275 QLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIAL 352 (479)
T ss_pred HhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEecccceeeccCCceEEE
Confidence 44467788999999999999888899989999999999999543 33478889888888886 6889999999999999
Q ss_pred EecCCCCceeEEEEec-CC-----------CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 392 WRREESGAHSCLAVLT-GH-----------TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 392 wd~~~~~~~~~~~~~~-~h-----------~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
|++... +++.+.. +| ...|++|+..|... ++++|+.+|.|++|.+.++...+
T Consensus 353 Ws~~KK---kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-------------L~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 353 WSLLKK---KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-------------LLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred eeeccc---CceeEeeccccccCCccccccccceeeeEecccCc-------------eEEecCCCCceEEEEecCCcccc
Confidence 999873 3333321 12 23799999999988 99999999999999999997777
Q ss_pred cCCCC
Q 012007 460 KGLHS 464 (473)
Q Consensus 460 ~~~~~ 464 (473)
..+.+
T Consensus 417 ~~l~~ 421 (479)
T KOG0299|consen 417 NLLYS 421 (479)
T ss_pred ceeee
Confidence 66554
No 79
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1e-27 Score=232.16 Aligned_cols=252 Identities=13% Similarity=0.225 Sum_probs=186.2
Q ss_pred eeCCCcEEEeeCCc--cccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecC
Q 012007 139 GSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSV 215 (473)
Q Consensus 139 g~~dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (473)
|+.++.|++|+..+ .+..+.+|.+.|.+++|+|+ +++|++|+.||.|+|||+.+.........
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~-------------- 115 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK-------------- 115 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc--------------
Confidence 66789999998653 45678899999999999997 78999999999999999976432100000
Q ss_pred CCcceEEEeecceeeEeeccCCeeEEEEcCCCCE-EEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEE
Q 012007 216 NPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL-LYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFT 293 (473)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s 293 (473)
.......+|...|.+++|+|++.. |++++.|++|+|||+++++.+..+. |...|.++.|++++ +|++
T Consensus 116 ----------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 116 ----------DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred ----------cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence 000122359999999999998875 5789999999999999998887776 56789999999998 7788
Q ss_pred EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEE-----EEccCCCEEEEeCCCC----cEEEEecCCcccccceee
Q 012007 294 GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTAL-----AVNQESAVVYCGSSDG----LVNFWECEKHLSHGGVLR 364 (473)
Q Consensus 294 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l-----~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~ 364 (473)
++.|+.|+|||++.+. ....+.+|.+.+... .|++++.+|++++.|+ .|+|||++..........
T Consensus 185 ~s~D~~IrIwD~Rsg~------~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 185 TCVGKHMHIIDPRKQE------IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred EecCCEEEEEECCCCc------EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence 8899999999997432 345567787765332 3458888988877764 799999986433333322
Q ss_pred --cCcceEE-EEEe-cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 365 --GHKMAVL-CLAA-AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 365 --~~~~~v~-~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.+...++ .+.+ ++.++++|+.|+.|++|++..+ ....+..+. +..++.+++|.|...
T Consensus 259 ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~-~~~~l~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 259 IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG-SIRKVNEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC-cEEeecccc-cCCCccceEEccccc
Confidence 2222221 2223 3889999999999999999873 233344333 567889999999864
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.6e-28 Score=237.01 Aligned_cols=245 Identities=28% Similarity=0.506 Sum_probs=210.4
Q ss_pred ceee-eeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 115 LIGS-IVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 115 ~~~~-l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.+.+ +.||.+.|+++.+. +++|++|+.|.+++|||.. .....+.+|.+.|.++...+. ++++|+.|.+|++|+
T Consensus 240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~ 317 (537)
T KOG0274|consen 240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWD 317 (537)
T ss_pred EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc--eEeeccCCceEEEEe
Confidence 4445 99999999999998 9999999999999999965 667889999999999998654 899999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
++++....... +|.++|.++..+ +.++++|+.|++|++||+.++++
T Consensus 318 v~n~~~l~l~~--------------------------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c 363 (537)
T KOG0274|consen 318 VTNGACLNLLR--------------------------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC 363 (537)
T ss_pred ccCcceEEEec--------------------------------cccccEEEEEec--CCEEEEEecCceEEEEEhhhcee
Confidence 99776544433 399999999997 78999999999999999999999
Q ss_pred eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
+..+.+|...|.++.+.....+++|+.|+.|++||++.. ......+.+|..-+..+.+ .+++|++++.|+.|+
T Consensus 364 l~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~-----~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 364 LKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTK-----RKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIK 436 (537)
T ss_pred eeeecCCcceEEEEEecCcceEEeeeeccceEeecCCch-----hhhhhhhcCCccccccccc--ccceeEeccccccEE
Confidence 999999999999998877689999999999999999732 1456788889888866665 467999999999999
Q ss_pred EEecCCcccccceeec-CcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe
Q 012007 350 FWECEKHLSHGGVLRG-HKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL 406 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 406 (473)
+||...+... ..+.+ |...+.++......+++++.||.+++||++++ .+...+
T Consensus 437 ~WD~~~~~~~-~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~---~~~~~l 490 (537)
T KOG0274|consen 437 LWDAEEGECL-RTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSG---TLIRTL 490 (537)
T ss_pred EeecccCcee-eeeccCCcccEEEeecCcceEEEEecCCeeEEEecccC---chhhhh
Confidence 9999886555 44555 77888888888888999999999999999984 444444
No 81
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.4e-28 Score=218.64 Aligned_cols=258 Identities=20% Similarity=0.310 Sum_probs=211.5
Q ss_pred cCcccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 159 SNSGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 159 ~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
.|.+.|+.+...|+.. .+++.+..+.|.|||...........-. ....+.+.+|.+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~----------------------~~Pdl~L~gH~~e 179 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGE----------------------CRPDLRLKGHEKE 179 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccccc----------------------CCCceEEEeeccc
Confidence 4889999999988764 5666778899999998765432211101 1122445578888
Q ss_pred eeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCe-------eeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcc
Q 012007 238 VSCLSLNA-EQGLLYSGSWDKTLKVWRISDCK-------CLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 238 v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~-------~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~ 307 (473)
-..|+|++ ....|++|+.|++|++||+.... +...+.+|...|..++|++-. ++.+++.|+.+.|||+|.
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~ 259 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS 259 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence 88899998 45689999999999999996532 345678999999999998865 899999999999999985
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec---CCEEEEE
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA---GNLVFSG 383 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~ 383 (473)
. .........+|...|.|++|+| ++..||+|+.|++|.+||+++.......+.+|...|.++.++ ...|+++
T Consensus 260 ~----~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 260 N----TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred C----CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec
Confidence 2 3345567789999999999999 567889999999999999999888888999999999998775 6789999
Q ss_pred eCCCcEEEEecCCC-----------CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 384 SADRNICLWRREES-----------GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 384 ~~dg~i~iwd~~~~-----------~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
+.|+.+.|||+..- ++.+++....||...|..+.|+|... |.|+|.+.|+.+.||++
T Consensus 336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP------------W~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP------------WTIASVAEDNILQIWQM 403 (422)
T ss_pred ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC------------eEEEEecCCceEEEeec
Confidence 99999999999742 23456788889999999999999987 58999999999999999
Q ss_pred CC
Q 012007 453 SE 454 (473)
Q Consensus 453 ~~ 454 (473)
..
T Consensus 404 s~ 405 (422)
T KOG0264|consen 404 AE 405 (422)
T ss_pred cc
Confidence 74
No 82
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=8.3e-28 Score=202.89 Aligned_cols=254 Identities=19% Similarity=0.318 Sum_probs=197.9
Q ss_pred EEEec-CCEEEEeeCCCcEEEeeCCcc----ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 128 SLAAS-GDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 128 ~~~~~-g~~l~tg~~dg~i~vwd~~~~----~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
+|+|. ..++++|+.||+||+|++... -+....|.++|.+++|+.||..+++|+.|+.+++||+.+++......
T Consensus 34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~-- 111 (347)
T KOG0647|consen 34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAA-- 111 (347)
T ss_pred EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeee--
Confidence 44442 557889999999999987642 24456799999999999999999999999999999999986544333
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC--EEEEEeCCCCEEEEEcCCCeeeEEeecCCCce
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG--LLYSGSWDKTLKVWRISDCKCLESINAHDDAI 280 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v 280 (473)
|..+|.++.|-+... .|++|++|++|+.||++...++.++... +.+
T Consensus 112 -------------------------------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRv 159 (347)
T KOG0647|consen 112 -------------------------------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERV 159 (347)
T ss_pred -------------------------------cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-cee
Confidence 999999999988655 8999999999999999999998888743 456
Q ss_pred eEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc-cc
Q 012007 281 NSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL-SH 359 (473)
Q Consensus 281 ~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~ 359 (473)
.++..- ..+++++..+..|.+|+++.... .........+-.+.|++..++....+.|+-+|.+.|..+..+. ..
T Consensus 160 Ya~Dv~-~pm~vVata~r~i~vynL~n~~t----e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 160 YAADVL-YPMAVVATAERHIAVYNLENPPT----EFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD 234 (347)
T ss_pred eehhcc-CceeEEEecCCcEEEEEcCCCcc----hhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccC
Confidence 665542 34788899999999999974321 1111222345568999999988888999999999999887532 22
Q ss_pred cceeecCcc---------eEE--EEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 360 GGVLRGHKM---------AVL--CLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 360 ~~~~~~~~~---------~v~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
...++.|.. .|. +|.|.-..|++++.||++.+||-+. ...+.....|..+|++.+|+.+|.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda---r~kLk~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA---RTKLKTSETHPQPITCCSFNRNGS 306 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh---hhhhhccCcCCCccceeEecCCCC
Confidence 334555542 233 3445567899999999999999877 566777788999999999999998
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-26 Score=187.60 Aligned_cols=288 Identities=18% Similarity=0.221 Sum_probs=221.0
Q ss_pred cccEEEEE--ecCCEEEEeeCCCcEEEeeC---Cc--------------cccccccCcccEEEEEEeCCCCEEEEEeCCC
Q 012007 123 EGHIYSLA--ASGDLLYTGSDSKNIRVWKN---LK--------------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183 (473)
Q Consensus 123 ~~~V~~~~--~~g~~l~tg~~dg~i~vwd~---~~--------------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 183 (473)
...|.+++ |.|.+.|+|+...+.||... .+ ..+.-+.|.+.|.|.+|+|+|.+|++|+.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 44566655 45999999999999999731 11 1234567899999999999999999999999
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC----CCEEEEEe-CCCC
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE----QGLLYSGS-WDKT 258 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~l~s~s-~dg~ 258 (473)
+|++..+.......... ..-+.-|.+.|..++|..+ +.+|++++ .|..
T Consensus 112 ~ik~l~fn~dt~~~~g~---------------------------dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGH---------------------------DLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred eEEEEecccccccccCc---------------------------ceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 99998776543221110 0111128999999999753 55777765 4667
Q ss_pred EEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeecc---CCccEEEEEEccC
Q 012007 259 LKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK---HENAVTALAVNQE 335 (473)
Q Consensus 259 v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~ 335 (473)
|++-|...|+..+.+.+|.+-|.++..-.+-++++|+.|.+|++||++..... ..+-..+.. ..+.|.+++..|.
T Consensus 165 iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v--~~l~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCV--NTLDNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeecccee--eeccCcccCCCcccceeEEEEECCC
Confidence 88889999999999999999999986555569999999999999999843211 111111111 2367999999999
Q ss_pred CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCc-eeEEEEecCCCCc
Q 012007 336 SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGA-HSCLAVLTGHTGP 412 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~ 412 (473)
|++|++|..|....+||++.+.. .+.+..|...|.|+.+ ...|+++|+.|..|++-|+...-. .-++.....|...
T Consensus 243 grll~sg~~dssc~lydirg~r~-iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk 321 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRM-IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK 321 (350)
T ss_pred cceeeeccCCCceEEEEeeCCce-eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc
Confidence 99999999999999999997654 4567789888877655 577999999999999999986322 2345556789999
Q ss_pred eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 413 VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 413 V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+..+.|+|..- -+++.+.|.++.+|.++
T Consensus 322 ~i~~rwh~~d~-------------sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 322 AIQCRWHPQDF-------------SFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEecCccc-------------eeeeccCcceEEEeccC
Confidence 99999999986 69999999999999864
No 84
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.4e-27 Score=200.68 Aligned_cols=290 Identities=17% Similarity=0.285 Sum_probs=223.3
Q ss_pred eeeecccEEEEEec---CCEEEEeeCCCcEEEeeCCccc-----------------cccccCcccEEEEEEeC-CCCEEE
Q 012007 119 IVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKEF-----------------SGFKSNSGLVKAIIISG-DSNKIF 177 (473)
Q Consensus 119 l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~~~~-----------------~~~~~h~~~V~~l~~s~-~~~~l~ 177 (473)
...|.|.|.++..+ |+|+++|+.||.|.|||+...- ..-.+|.-.|..+.|-| |.-++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 34578899998876 8999999999999999965211 11235778999999988 445888
Q ss_pred EEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC---CCCEEEEEe
Q 012007 178 TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA---EQGLLYSGS 254 (473)
Q Consensus 178 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~s~s 254 (473)
+++.|.+++|||..+.+....+. ..+.|.+-+++| ...++++|.
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~---------------------------------me~~VYshamSp~a~sHcLiA~gt 165 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK---------------------------------MEGKVYSHAMSPMAMSHCLIAAGT 165 (397)
T ss_pred cccccceEEEeecccceeeEEee---------------------------------cCceeehhhcChhhhcceEEEEec
Confidence 89999999999999887655554 556677777777 356888899
Q ss_pred CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccC---------CCcceeeeeeeccC
Q 012007 255 WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQG---------KGTKHCLAQVLLKH 323 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~ 323 (473)
.|-.|++.|+.+|.+-+.+.+|.+.|.++.|+|.. .|++|+.||.|++||++... ........+.-..|
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah 245 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH 245 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc
Confidence 99999999999999999999999999999999987 78899999999999997431 11122223345678
Q ss_pred CccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee--cCcc----eEEEEEecCCEEEEEeCCCcEEEEecCCC
Q 012007 324 ENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR--GHKM----AVLCLAAAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 324 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~----~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
.+.|..++|..++.++++++.|..+++|+..++......+. .|.. .+..-+-+...++---.++.+.++++-.
T Consensus 246 ~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~s- 324 (397)
T KOG4283|consen 246 YGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLE- 324 (397)
T ss_pred cceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccC-
Confidence 89999999999999999999999999999876543221111 1111 1110022333344444568899999888
Q ss_pred CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 398 GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 398 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
...+..+..|-..|.|.++.|+-+ ...+|..|+.|..|-.....|
T Consensus 325 --gs~ir~l~~h~k~i~c~~~~~~fq-------------~~~tg~~d~ni~~w~p~l~~p 369 (397)
T KOG4283|consen 325 --GSFVRRLSTHLKRINCAAYRPDFE-------------QCFTGDMNGNIYMWSPALKSP 369 (397)
T ss_pred --ceEEEeeecccceeeEEeecCchh-------------hhhccccCCccccccccccCC
Confidence 678888999988999999999987 689999999999998844433
No 85
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.8e-28 Score=211.77 Aligned_cols=263 Identities=17% Similarity=0.222 Sum_probs=210.8
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+..+.+..|+..|.-+.|+++|+|||+++.|.+..+|++......... ...
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~-----------------------------~tl 265 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLK-----------------------------KTL 265 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeee-----------------------------eee
Confidence 445678889999999999999999999999999999998765431111 223
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccC
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~ 309 (473)
.+|..+|..+.|+||.++|++++.|..+.+||+.+|.+...++ ++...+.+++|.||+ .+++|+.|+.|..||++...
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI 345 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch
Confidence 4699999999999999999999999999999999999988775 346889999999999 89999999999999987322
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcE
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNI 389 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i 389 (473)
. ..........|.++++.+||+++++.+.|..|++|+.++..........+.....+++-+++++++.-.+..|
T Consensus 346 ~------~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 346 L------GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred h------hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCee
Confidence 1 1111112256899999999999999999999999999875554444445566667777889999999999999
Q ss_pred EEEecCCCCceeEEEEecCCCCc--eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCC
Q 012007 390 CLWRREESGAHSCLAVLTGHTGP--VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHS 464 (473)
Q Consensus 390 ~iwd~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~ 464 (473)
++||+.. ...+..+.||... |-.-+|...... ++++||+|+.|+||+...+++....-.+
T Consensus 420 ~LWDl~e---~~lv~kY~Ghkq~~fiIrSCFgg~~~~------------fiaSGSED~kvyIWhr~sgkll~~LsGH 481 (519)
T KOG0293|consen 420 HLWDLEE---NKLVRKYFGHKQGHFIIRSCFGGGNDK------------FIASGSEDSKVYIWHRISGKLLAVLSGH 481 (519)
T ss_pred EEeecch---hhHHHHhhcccccceEEEeccCCCCcc------------eEEecCCCceEEEEEccCCceeEeecCC
Confidence 9999996 6788888898663 333445443322 8999999999999999998876554443
No 86
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-28 Score=226.04 Aligned_cols=271 Identities=23% Similarity=0.455 Sum_probs=218.5
Q ss_pred cCCEEEEeeCCCcEEEeeCCc--------cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecc
Q 012007 132 SGDLLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~~--------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 203 (473)
.+++|+|||.||.|++|+... .+..++.|...|+.++...+++.|++++.|-+|++|+...........+.
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir- 114 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR- 114 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh-
Confidence 477899999999999997541 35678889999999999999999999999999999999876411111111
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE-cCCCCEEEEEeCCCCEEEEEcCCCe--eeE--------E
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL-NAEQGLLYSGSWDKTLKVWRISDCK--CLE--------S 272 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~l~s~s~dg~v~vwd~~~~~--~~~--------~ 272 (473)
.|.+.|.|+++ .++..++++|+-|+.|.+||++++. .+. .
T Consensus 115 -----------------------------~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 115 -----------------------------THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred -----------------------------cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 29999999999 7788999999999999999999772 222 2
Q ss_pred ee-cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 273 IN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 273 ~~-~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
+. ++...|.+++..+.+ .+++|+..+.|++||.++..+ ...+.+|...|.++..++||..++++++||+|++
T Consensus 166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k------imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK------IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred CCCCCccceeeeecCCcceEEEecCcccceEEeccccccc------eeeeeccccceEEEEEcCCCCeEeecCCCceEEe
Confidence 33 788899999999888 788999999999999985432 4556799999999999999999999999999999
Q ss_pred EecCCcccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 351 WECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
||+...... ..+..|...+.++..+ =..+++|+.||.|..=|+++......+. ....+|..+..+...+
T Consensus 240 WdLgqQrCl-~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic---k~daPv~~l~~~~~~~----- 310 (735)
T KOG0308|consen 240 WDLGQQRCL-ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC---KEDAPVLKLHLHEHDN----- 310 (735)
T ss_pred eecccccee-eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee---cCCCchhhhhhccccC-----
Confidence 999975544 5577888888877654 5689999999999999999842222222 2345788888876655
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
-+-.++.|+.|+-|.....
T Consensus 311 --------~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 311 --------SVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred --------CceeeeccccceecCCccc
Confidence 3577788999999987643
No 87
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=208.94 Aligned_cols=252 Identities=18% Similarity=0.276 Sum_probs=207.0
Q ss_pred cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 159 SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 159 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
+....+.|..|+|||+||++|+.||.|.||+..+++........... .+.-+.++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd------------------------~fMMmd~aV 266 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD------------------------NFMMMDDAV 266 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc------------------------ceeecccce
Confidence 34567899999999999999999999999999998765443322111 111288999
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
.|+.|+.|...|++|+.||.|++|.+++|.|++.+. +|...|+|+.|+.++ .+++++.|.++++.-+..+ ..
T Consensus 267 lci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG------K~ 340 (508)
T KOG0275|consen 267 LCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG------KC 340 (508)
T ss_pred EEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc------hh
Confidence 999999999999999999999999999999999997 899999999999998 8999999999999988633 34
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee-cCcceEEEEE---ecCCEEEEEeCCCcEEEE
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR-GHKMAVLCLA---AAGNLVFSGSADRNICLW 392 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~---~~~~~l~s~~~dg~i~iw 392 (473)
...+.+|.+.|+...|.++|..+++++.||+|++|+..+......... +...+|..+- -+...+++|...++|.|-
T Consensus 341 LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 341 LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 678899999999999999999999999999999999987655433222 2334454443 357789999999999999
Q ss_pred ecCCCCceeEEEEecC---CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 393 RREESGAHSCLAVLTG---HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
++.. +.+..+.. ..+...+.+.+|.+. ++++.+.|+.++.+.+.++..
T Consensus 421 n~qG----QvVrsfsSGkREgGdFi~~~lSpkGe-------------wiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 421 NMQG----QVVRSFSSGKREGGDFINAILSPKGE-------------WIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred eccc----eEEeeeccCCccCCceEEEEecCCCc-------------EEEEEccCcEEEEEEeecCce
Confidence 9886 45555542 345567788899998 899999999999999988754
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3e-27 Score=195.57 Aligned_cols=251 Identities=20% Similarity=0.320 Sum_probs=207.3
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
..+++|...|.+|+|+.+|.+|++|+.|+++++|+++......... ..+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~------------------------------~~gh 63 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV------------------------------YRGH 63 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhc------------------------------ccCC
Confidence 4567899999999999999999999999999999998763322111 1258
Q ss_pred cCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 235 YDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 235 ~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
.+.|-.++|+| ..++|++++.|.+|++||++.+++...+....+.+. +.|+|++ ++++++.|..|.+.|.+....
T Consensus 64 ~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~-- 140 (313)
T KOG1407|consen 64 TDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKI-- 140 (313)
T ss_pred CcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccce--
Confidence 98999999998 567999999999999999999999999886666665 4556665 999999999999999874321
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNIC 390 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 390 (473)
.........+..++|+.++.+++.....|+|.|..... .++...+..|.....|+.+ +|++||+|+.|-.+.
T Consensus 141 -----~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvS 214 (313)
T KOG1407|consen 141 -----VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS 214 (313)
T ss_pred -----eehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc-cccccccccCCcceEEEEECCCCceEeeccccceee
Confidence 22233455678899998888888888889999999885 5566788899988888764 599999999999999
Q ss_pred EEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+||++. ..|++.+..+.-+|..|.|+.+++ +||+||+|..|-|=+++++....+
T Consensus 215 LWD~~E---LiC~R~isRldwpVRTlSFS~dg~-------------~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 215 LWDVDE---LICERCISRLDWPVRTLSFSHDGR-------------MLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred ccChhH---hhhheeeccccCceEEEEeccCcc-------------eeeccCccceEEeEecccCCeEEE
Confidence 999988 788999999999999999999999 999999999997766666654433
No 89
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2e-26 Score=222.29 Aligned_cols=257 Identities=16% Similarity=0.203 Sum_probs=190.0
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
-..|+....++++..+++++.+.....|+...+...... ..... .......+.+|.+.|.+
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~--~~~G~-----------------~~~~~~~l~GH~~~V~~ 80 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKH--TDYGK-----------------LASNPPILLGQEGPIID 80 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeec--ccccc-----------------CCCCCceEeCCCCCEEE
Confidence 344566666778777888888888888987654321111 00000 00011234579999999
Q ss_pred EEEcC-CCCEEEEEeCCCCEEEEEcCCC-------eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCC
Q 012007 241 LSLNA-EQGLLYSGSWDKTLKVWRISDC-------KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 241 l~~~~-~~~~l~s~s~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~ 310 (473)
++|+| ++++|++|+.|++|++||+.++ +++..+.+|...|.+++|+|++ +|++++.|+.|++||++.+
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-- 158 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-- 158 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC--
Confidence 99999 8899999999999999999765 3567888999999999999974 8999999999999999742
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE---EEEEecCCEEEEEe---
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV---LCLAAAGNLVFSGS--- 384 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~s~~--- 384 (473)
.....+..|...|.+++|+|++.+|++++.|+.|++||++++... ..+.+|.... ..+.+++..+++++
T Consensus 159 ----~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v-~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~ 233 (493)
T PTZ00421 159 ----KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV-SSVEAHASAKSQRCLWAKRKDLIITLGCSK 233 (493)
T ss_pred ----eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE-EEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence 234566789999999999999999999999999999999986543 4556676432 34455666776654
Q ss_pred -CCCcEEEEecCCCCceeEEEEecCC-CCceeEEEEecCCCCCcccccCCCccEEEEEee-CCCcEEEEEcCCCCCC
Q 012007 385 -ADRNICLWRREESGAHSCLAVLTGH-TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVSEHAPD 458 (473)
Q Consensus 385 -~dg~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~~~~~ 458 (473)
.|+.|++||++... .++.....+ ...+....|++++. +|++++ .|+.|++||+.++...
T Consensus 234 s~Dr~VklWDlr~~~--~p~~~~~~d~~~~~~~~~~d~d~~-------------~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 234 SQQRQIMLWDTRKMA--SPYSTVDLDQSSALFIPFFDEDTN-------------LLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred CCCCeEEEEeCCCCC--CceeEeccCCCCceEEEEEcCCCC-------------EEEEEEeCCCeEEEEEeeCCceE
Confidence 47899999998742 233333333 34566677889887 777777 5999999999987643
No 90
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.8e-28 Score=197.14 Aligned_cols=250 Identities=20% Similarity=0.278 Sum_probs=195.7
Q ss_pred eeecccEEEE--EecCCEEEEeeCCCcEEEeeCC-----ccccccccCcccEEEEEEeC--CCCEEEEEeCCCeEEEEeC
Q 012007 120 VRKEGHIYSL--AASGDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIISG--DSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 120 ~~h~~~V~~~--~~~g~~l~tg~~dg~i~vwd~~-----~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vwd~ 190 (473)
..|++.|-.. .+.|+.|||++.|++|+|+... +.+.++.+|.++|..++|.. .|.+||+|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 3466666654 4569999999999999999754 45678999999999999966 7899999999999999998
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCCC-
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISDC- 267 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~~- 267 (473)
+.+.-...... ..|...|++++|.| -|-.|++++.||.|.|.+.++.
T Consensus 88 ~~g~w~k~~e~------------------------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g 137 (299)
T KOG1332|consen 88 ENGRWTKAYEH------------------------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG 137 (299)
T ss_pred CCCchhhhhhh------------------------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC
Confidence 87743222211 13999999999998 4678999999999999998754
Q ss_pred --eeeEEeecCCCceeEEEEcCC---------------CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEE
Q 012007 268 --KCLESINAHDDAINSVVAGFD---------------SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTAL 330 (473)
Q Consensus 268 --~~~~~~~~~~~~v~~l~~~~~---------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l 330 (473)
.......+|.-.|++++|.|. ..|++|+.|..|+||+...+ ...+...+.+|.+.|..+
T Consensus 138 ~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~----~w~~e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 138 GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD----SWKLERTLEGHKDWVRDV 213 (299)
T ss_pred CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc----chhhhhhhhhcchhhhhh
Confidence 223445689999999999875 15999999999999998742 444556689999999999
Q ss_pred EEccCC----CEEEEeCCCCcEEEEecCCccc--ccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeE
Q 012007 331 AVNQES----AVVYCGSSDGLVNFWECEKHLS--HGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSC 402 (473)
Q Consensus 331 ~~~~~~----~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 402 (473)
+|.|.- .+|++++.||+|.||..+.... ....+......+ .++++.|++|+.++.|+.|.+|.-+..+.+.+
T Consensus 214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~ 293 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEE 293 (299)
T ss_pred hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEE
Confidence 999953 6899999999999998764322 223333344445 44556799999999999999998776555554
Q ss_pred E
Q 012007 403 L 403 (473)
Q Consensus 403 ~ 403 (473)
+
T Consensus 294 v 294 (299)
T KOG1332|consen 294 V 294 (299)
T ss_pred c
Confidence 4
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4e-28 Score=224.24 Aligned_cols=259 Identities=24% Similarity=0.360 Sum_probs=207.3
Q ss_pred EEEEe-CCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEc
Q 012007 166 AIIIS-GDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN 244 (473)
Q Consensus 166 ~l~~s-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 244 (473)
.+..+ |.++||+|||.||.|++|++.......... .......|.+.|+.+...
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~--------------------------~~asme~HsDWVNDiiL~ 82 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP--------------------------YIASMEHHSDWVNDIILC 82 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccc--------------------------hhhhhhhhHhHHhhHHhh
Confidence 34443 456789999999999999987654321111 001112399999999999
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCC--eeeEEeecCCCceeEEEE-cCCC-EEEEEeCCCcEEEEeCcccCCC----cceee
Q 012007 245 AEQGLLYSGSWDKTLKVWRISDC--KCLESINAHDDAINSVVA-GFDS-LVFTGSADGTVKVWRRELQGKG----TKHCL 316 (473)
Q Consensus 245 ~~~~~l~s~s~dg~v~vwd~~~~--~~~~~~~~~~~~v~~l~~-~~~~-~l~s~~~dg~i~vwd~~~~~~~----~~~~~ 316 (473)
.+++.|++++.|-+|++|+...+ -++.++..|.+.|.|+++ .++. ++++|+-|+.|.+||+..+... .....
T Consensus 83 ~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 83 GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred cCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 99999999999999999999877 678889999999999998 5554 8999999999999999854220 01111
Q ss_pred eeeec-cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEe
Q 012007 317 AQVLL-KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 317 ~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd 393 (473)
...+. ++...|.+++.++.|..+++|+.++.|++||.++..+.. .+.||...|.++ ..||..+++++.||+|++||
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kim-kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIM-KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWD 241 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecCcccceEEecccccccee-eeeccccceEEEEEcCCCCeEeecCCCceEEeee
Confidence 12223 888999999999999999999999999999999876654 556999888766 46799999999999999999
Q ss_pred cCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCCccc
Q 012007 394 REESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSPTQ 467 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~~~~ 467 (473)
+.. .+|+.++..|...|.++..+|+-. .+++|+.||.|..=|+.+.......+.+.++
T Consensus 242 Lgq---QrCl~T~~vH~e~VWaL~~~~sf~-------------~vYsG~rd~~i~~Tdl~n~~~~tlick~daP 299 (735)
T KOG0308|consen 242 LGQ---QRCLATYIVHKEGVWALQSSPSFT-------------HVYSGGRDGNIYRTDLRNPAKSTLICKEDAP 299 (735)
T ss_pred ccc---cceeeeEEeccCceEEEeeCCCcc-------------eEEecCCCCcEEecccCCchhheEeecCCCc
Confidence 988 789999999999999999999887 7999999999999999886544444433333
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.5e-27 Score=212.28 Aligned_cols=241 Identities=20% Similarity=0.350 Sum_probs=192.2
Q ss_pred eeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc--cccccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeC
Q 012007 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~ 190 (473)
+..+......|++++| ||++||+|...|.|+|||... .+..+.+|+.+|..+.|+|++ ..|++|+.|+.+++||+
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 3445566788888776 599999999999999999554 577899999999999999976 56778888999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCC-e
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDC-K 268 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~-~ 268 (473)
.+... ...+ .+|++.|.|.+|+|. +..+++|++||.|++||++.. .
T Consensus 141 s~a~v--~~~l------------------------------~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 141 STAYV--QAEL------------------------------SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS 188 (487)
T ss_pred CCcEE--EEEe------------------------------cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc
Confidence 88763 2111 259999999999994 558999999999999999877 6
Q ss_pred eeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcE
Q 012007 269 CLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 269 ~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 348 (473)
.+.++. |..+|..+.+-|.|.+++......|++||+..++ ........|...|+|+++..++..|++++-|+.|
T Consensus 189 ~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~-----qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~V 262 (487)
T KOG0310|consen 189 RVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG-----QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHV 262 (487)
T ss_pred eeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc-----eehhhhhcccceEEEEEeecCCceEeecccccce
Confidence 666665 8999999999999755555557899999997433 3444555699999999999999999999999999
Q ss_pred EEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 349 NFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
++||+.+.+..... ...++| +++++++..++.|..||.+.+=+...
T Consensus 263 KVfd~t~~Kvv~s~--~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 263 KVFDTTNYKVVHSW--KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EEEEccceEEEEee--ecccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 99997664333222 234455 45567889999999999887765443
No 93
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=221.83 Aligned_cols=305 Identities=19% Similarity=0.247 Sum_probs=220.4
Q ss_pred EEEec--CCEEEEeeCCCcEEEeeCCcc-----ccccccCcccEEEEEEeCC-----------CCEEEEEeCCCeEEEEe
Q 012007 128 SLAAS--GDLLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIISGD-----------SNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 128 ~~~~~--g~~l~tg~~dg~i~vwd~~~~-----~~~~~~h~~~V~~l~~s~~-----------~~~l~s~~~dg~i~vwd 189 (473)
++.|| .+.|..--.|..++|||+... ...+..|...|..+.--|. ...++||+.|++||+|+
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~ 408 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD 408 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence 45565 567888888999999997632 3345568888888876551 12589999999999999
Q ss_pred CCCCCeeeEEeecccc-ccceeEeecCCCcceEE-----EeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEE
Q 012007 190 VSRKNASVHKRVGSLP-TFKDYVKSSVNPKNYVE-----VRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd 263 (473)
++.........-..+. ....+.... ....++. +......-..+....+.+++.+|+|++|++|..-|+++||+
T Consensus 409 l~~ctnn~vyrRNils~~l~ki~y~d-~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 409 LAFCTNNQVYRRNILSANLSKIPYED-STQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred cccccccceeecccchhhhhcCcccc-CchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 9873221111100000 000000000 0000000 00011111223455799999999999999999999999999
Q ss_pred cCCCeeeEEeecCCCceeEEEEcCCC----EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccE------------
Q 012007 264 ISDCKCLESINAHDDAINSVVAGFDS----LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAV------------ 327 (473)
Q Consensus 264 ~~~~~~~~~~~~~~~~v~~l~~~~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v------------ 327 (473)
+...+.+..+.+|+..|.|+.++... +|++++.|..|+|||+. ....+++.+.+|...|
T Consensus 488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~-----rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK-----RNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc-----cccchhhhhcccccceeEEEEeecCCce
Confidence 99999999999999999999998653 89999999999999986 3334444444444444
Q ss_pred -------------------------------------EEEEEccCCCEEEEeCCCCcEEEEecCCccccccee--ecCcc
Q 012007 328 -------------------------------------TALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL--RGHKM 368 (473)
Q Consensus 328 -------------------------------------~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~ 368 (473)
..|+..|..+++++++.|..|+|||++.+++..... .+|.+
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 445555666688999999999999999876654332 23444
Q ss_pred eEE--EEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc
Q 012007 369 AVL--CLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446 (473)
Q Consensus 369 ~v~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~ 446 (473)
... .+.|.|.||++.+.|+++.++|..+ .+|+....||...|+.+.|.+|.+ -|++.+.||.
T Consensus 643 ~lIKv~lDPSgiY~atScsdktl~~~Df~s---gEcvA~m~GHsE~VTG~kF~nDCk-------------HlISvsgDgC 706 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDKTLCFVDFVS---GECVAQMTGHSEAVTGVKFLNDCK-------------HLISVSGDGC 706 (1080)
T ss_pred ceEEEEECCCccEEEEeecCCceEEEEecc---chhhhhhcCcchheeeeeecccch-------------hheeecCCce
Confidence 444 4557799999999999999999999 689999999999999999999999 5999999999
Q ss_pred EEEEEcCC
Q 012007 447 VKVWRVSE 454 (473)
Q Consensus 447 v~iW~i~~ 454 (473)
|.||.+..
T Consensus 707 IFvW~lp~ 714 (1080)
T KOG1408|consen 707 IFVWKLPL 714 (1080)
T ss_pred EEEEECch
Confidence 99999974
No 94
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-26 Score=196.72 Aligned_cols=259 Identities=17% Similarity=0.278 Sum_probs=200.5
Q ss_pred eeeeecccEEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCC--EEEEEeCCCeEEEEeCCCC
Q 012007 118 SIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSN--KIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~--~l~s~~~dg~i~vwd~~~~ 193 (473)
.+..|.+.|++++.+|.++|+|+.|-+|+|||+. ..+..+..|.+.|+++.|.++-. .|++|+.||.|.+|+...-
T Consensus 38 ~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 38 AFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred cccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence 4567999999999999999999999999999987 45677888999999999998865 8999999999999999877
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 273 (473)
....... .|...|+.++.+|.+++.++.+.|+.++.||+-.|+.-..+
T Consensus 118 ~~~~slK--------------------------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 118 ELLKSLK--------------------------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred EEeeeec--------------------------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 5444333 48999999999999999999999999999999998876665
Q ss_pred ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEe
Q 012007 274 NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352 (473)
Q Consensus 274 ~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd 352 (473)
+... .-..+.|+|.| +++.+. ...|-+|.+..... . .. ......+.++.|. ++..|++|..|+.|.+||
T Consensus 166 ~L~~-~at~v~w~~~Gd~F~v~~-~~~i~i~q~d~A~v-----~-~~-i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 166 NLKN-KATLVSWSPQGDHFVVSG-RNKIDIYQLDNASV-----F-RE-IENPKRILCATFL-DGSELLVGGDNEWISLKD 235 (362)
T ss_pred ccCC-cceeeEEcCCCCEEEEEe-ccEEEEEecccHhH-----h-hh-hhccccceeeeec-CCceEEEecCCceEEEec
Confidence 5322 23348999998 455554 45688998763211 1 11 1112446666665 567888999999999999
Q ss_pred cCCcccccceeecCcceEEEEEe----cCCEEEEEeCCCcEEEEecCCC--CceeEEEEecCCCCceeEEEEec
Q 012007 353 CEKHLSHGGVLRGHKMAVLCLAA----AGNLVFSGSADRNICLWRREES--GAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 353 ~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
... ..+...+.+|...|-.+.+ ++.+|++++.||.|+|||++.. .....+..+.. ...++|+...-
T Consensus 236 ~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~~ 307 (362)
T KOG0294|consen 236 TDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVKL 307 (362)
T ss_pred cCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeehh
Confidence 987 4555788899999988874 3579999999999999999863 12234555443 45677776553
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8.6e-27 Score=207.35 Aligned_cols=286 Identities=22% Similarity=0.328 Sum_probs=226.2
Q ss_pred eeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCccc-------------------ccc-ccCcccEEEEEEeCCC
Q 012007 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEF-------------------SGF-KSNSGLVKAIIISGDS 173 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~~-------------------~~~-~~h~~~V~~l~~s~~~ 173 (473)
+..+..|.-+|+++.. +++++++++.||+|.=|++.... ..- +.|...|.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5677789988888764 57899999999999999743110 111 3788899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE
Q 012007 174 NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG 253 (473)
Q Consensus 174 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 253 (473)
+||++|+.|..|.||+.++.+....+. +|.+.|.+++|-.....|+++
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~--------------------------------ghr~~V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFK--------------------------------GHRGAVSSLAFRKGTSELYSA 262 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhccc--------------------------------ccccceeeeeeecCccceeee
Confidence 999999999999999999887544322 599999999999988899999
Q ss_pred eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEE-EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEE
Q 012007 254 SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV 332 (473)
Q Consensus 254 s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 332 (473)
+.|+.|++|++.....+.++.+|.+.|..|.....+.++ +|+.|+++++|++... ....+.++.+.+-|++|
T Consensus 263 s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-------sqlifrg~~~sidcv~~ 335 (479)
T KOG0299|consen 263 SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-------SQLIFRGGEGSIDCVAF 335 (479)
T ss_pred ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-------ceeeeeCCCCCeeeEEE
Confidence 999999999999999999999999999999887777555 5559999999998422 23556788889999999
Q ss_pred ccCCCEEEEeCCCCcEEEEecCCcccccceeecCc-----------ceEEEEE--ecCCEEEEEeCCCcEEEEecCCCC-
Q 012007 333 NQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK-----------MAVLCLA--AAGNLVFSGSADRNICLWRREESG- 398 (473)
Q Consensus 333 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~- 398 (473)
-.+. .+++|+.||.|.+|++.+...+......|. ..+++++ +..+++++|+.+|.|++|.+..+-
T Consensus 336 In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 336 INDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred eccc-ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 8654 577999999999999976544332222222 2565555 568899999999999999998742
Q ss_pred ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 399 AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 399 ~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
...++..+. -.+.|++|+|++++.. +++..+....+-=|-...
T Consensus 415 ~i~~l~~ls-~~GfVNsl~f~~sgk~------------ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 415 AINLLYSLS-LVGFVNSLAFSNSGKR------------IVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred ccceeeecc-cccEEEEEEEccCCCE------------EEEecccccccceeeEee
Confidence 234555555 5788999999999984 677777777776666543
No 96
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=5.6e-26 Score=220.16 Aligned_cols=202 Identities=16% Similarity=0.183 Sum_probs=154.5
Q ss_pred eccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCe--------eeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEE
Q 012007 233 RHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCK--------CLESINAHDDAINSVVAGFDS--LVFTGSADGTVK 301 (473)
Q Consensus 233 ~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~--------~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~ 301 (473)
+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++. ++..+.+|...|.+++|+|++ .+++++.|+.|+
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 59999999999996 7899999999999999997642 345678899999999999987 467899999999
Q ss_pred EEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE-------EE
Q 012007 302 VWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC-------LA 374 (473)
Q Consensus 302 vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-------~~ 374 (473)
+||++.+. ....+ .|...|.+++|+|+|.+|++++.|+.|+|||++++... ..+.+|...+.+ ++
T Consensus 152 IWDl~tg~------~~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 152 IWDIENEK------RAFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-SSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred EEECCCCc------EEEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-EEEecccCCceeEEEEeeeEc
Confidence 99997432 11222 25578999999999999999999999999999986544 456778764321 23
Q ss_pred ecCCEEEEEeCCC----cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEE
Q 012007 375 AAGNLVFSGSADR----NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450 (473)
Q Consensus 375 ~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW 450 (473)
+++.+|++++.|+ .|+|||++..........+..+.+.+......+++. ++++|+.|+.|++|
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~-------------l~lsGkGD~tIr~~ 290 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL-------------IYLIGKGDGNCRYY 290 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC-------------EEEEEECCCeEEEE
Confidence 5788999988774 799999986332222223334444444444444455 88999999999999
Q ss_pred EcCCC
Q 012007 451 RVSEH 455 (473)
Q Consensus 451 ~i~~~ 455 (473)
++..+
T Consensus 291 e~~~~ 295 (568)
T PTZ00420 291 QHSLG 295 (568)
T ss_pred EccCC
Confidence 99765
No 97
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.4e-26 Score=194.44 Aligned_cols=299 Identities=18% Similarity=0.276 Sum_probs=216.1
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc----cccccc--CcccEEEEEEeCCCCEE-EEEeCCCeE
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE----FSGFKS--NSGLVKAIIISGDSNKI-FTGHQDGKI 185 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~----~~~~~~--h~~~V~~l~~s~~~~~l-~s~~~dg~i 185 (473)
.+..|++|.+.|++++|+ |++|||++.|++|+||++..- -+.++. .-+.-+.++|.||-+-+ +++....++
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 467899999999998874 999999999999999986531 111111 12356889999997654 455556689
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
++|.+...+.-. ......+ .........|.-.|..+-...++.+|++++.|..|.+|+++
T Consensus 158 ~vyk~~K~~dG~-~~~~~v~-------------------~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk 217 (420)
T KOG2096|consen 158 CVYKLVKKTDGS-GSHHFVH-------------------IDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK 217 (420)
T ss_pred EEEEeeecccCC-CCccccc-------------------ccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC
Confidence 999876543200 0000000 00000111266667777777788999999999999999998
Q ss_pred CCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcce--eeeeeeccCCccEEEEEEccCCCEEEEe
Q 012007 266 DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH--CLAQVLLKHENAVTALAVNQESAVVYCG 342 (473)
Q Consensus 266 ~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 342 (473)
|+.+..+......-...+.+|+| ++++++..--|++|.+-.+..+..+ ..+..+.+|...|+.++|+++...+++.
T Consensus 218 -Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 218 -GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred -CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 99999998877777888899999 7788888899999998655443332 2345678999999999999999999999
Q ss_pred CCCCcEEEEecCCccccc---ceee---------cCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC
Q 012007 343 SSDGLVNFWECEKHLSHG---GVLR---------GHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT 410 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~---~~~~---------~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 410 (473)
+.||+++|||.+-..... ..++ +....-+.++|+|+.|+.+. ...+++|..++++...++. ..|.
T Consensus 297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e--~~h~ 373 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE--DIHS 373 (420)
T ss_pred ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH--Hhhc
Confidence 999999999975211110 0111 11122477889999988876 4579999998854433333 4688
Q ss_pred CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 411 GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 411 ~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+.|.+|+|+++++ +++|+| |..+++..
T Consensus 374 ~~Is~is~~~~g~-------------~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 374 TTISSISYSSDGK-------------YIATCG-DRYVRVIR 400 (420)
T ss_pred CceeeEEecCCCc-------------EEeeec-ceeeeeec
Confidence 9999999999999 788886 67888887
No 98
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=2.7e-26 Score=190.52 Aligned_cols=232 Identities=16% Similarity=0.201 Sum_probs=195.2
Q ss_pred ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
.+++|..+++.|.++.+|.+|++|+.|.++.||-..+++..-... +|.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~--------------------------------GHt 52 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD--------------------------------GHT 52 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec--------------------------------CCC
Confidence 468899999999999999999999999999999887776443332 699
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeC------CCcEEEEeCcccC
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSA------DGTVKVWRRELQG 309 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~------dg~i~vwd~~~~~ 309 (473)
+.|+|++.+.+.+.|++|+.|.++++||+++|+++..++ ...+|..+.|+.++.++..+. .+.|.++|++...
T Consensus 53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred ceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 999999999999999999999999999999999999998 457899999999985444443 3578999998443
Q ss_pred C-CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE--EEEecCCEEEEEeCC
Q 012007 310 K-GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL--CLAAAGNLVFSGSAD 386 (473)
Q Consensus 310 ~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~~~d 386 (473)
. .....+...+..+.+.++.+-|.|-+++|++|..||.|.+||++++.+.......|...|. +++++..++++++.|
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccC
Confidence 1 1233345566677899999999999999999999999999999998877777677777774 556789999999999
Q ss_pred CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCC
Q 012007 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDH 424 (473)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 424 (473)
.+-++||..+ ..++.++.. ..||++.+++|...+
T Consensus 212 ttakl~D~~t---l~v~Kty~t-e~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 212 TTAKLVDVRT---LEVLKTYTT-ERPVNTAAISPLLDH 245 (327)
T ss_pred ccceeeeccc---eeeEEEeee-cccccceecccccce
Confidence 9999999998 677777654 679999999998773
No 99
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.6e-27 Score=192.16 Aligned_cols=253 Identities=19% Similarity=0.252 Sum_probs=204.1
Q ss_pred cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
...|...|..+...-.|++|+||+.|++|+|+.+........ ...+.+|.+
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~l-----------------------------l~~L~Gh~G 57 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKL-----------------------------LAELTGHSG 57 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCcee-----------------------------eeEecCCCC
Confidence 345888888888888899999999999999999987653111 122336999
Q ss_pred CeeEEEEcC--CCCEEEEEeCCCCEEEEEcCCCe--eeEEeecCCCceeEEEEcCCC---EEEEEeCCCcEEEEeCcccC
Q 012007 237 AVSCLSLNA--EQGLLYSGSWDKTLKVWRISDCK--CLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 237 ~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~~~--~~~~~~~~~~~v~~l~~~~~~---~l~s~~~dg~i~vwd~~~~~ 309 (473)
+|..++|.. .|.+|++++.||.|.||.-++++ .......|...|++++|.|.+ .|++++.||.|.|.+.+..
T Consensus 58 PVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~- 136 (299)
T KOG1332|consen 58 PVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS- 136 (299)
T ss_pred CeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-
Confidence 999999976 89999999999999999988774 345566899999999999986 7899999999999998754
Q ss_pred CCcceeeeeeeccCCccEEEEEEccC---C-----------CEEEEeCCCCcEEEEecCCc-ccccceeecCcceEEEEE
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQE---S-----------AVVYCGSSDGLVNFWECEKH-LSHGGVLRGHKMAVLCLA 374 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~---~-----------~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~ 374 (473)
...........|.-.|++++|.|. | +.|++|+.|..|+||+.... ......+.+|...|..++
T Consensus 137 --g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVA 214 (299)
T KOG1332|consen 137 --GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVA 214 (299)
T ss_pred --CCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhh
Confidence 233445667889999999999985 4 56999999999999998764 233345889999997666
Q ss_pred ec------CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEE
Q 012007 375 AA------GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVK 448 (473)
Q Consensus 375 ~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~ 448 (473)
+. ..+|++++.||++.||..+..........+......+..+.|+..+. +|+.++.|+.|.
T Consensus 215 waP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-------------~LaVs~GdNkvt 281 (299)
T KOG1332|consen 215 WAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-------------ILAVSGGDNKVT 281 (299)
T ss_pred hccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-------------EEEEecCCcEEE
Confidence 54 35899999999999998875322333344455677899999999998 899999999999
Q ss_pred EEEcCC
Q 012007 449 VWRVSE 454 (473)
Q Consensus 449 iW~i~~ 454 (473)
+|.-+.
T Consensus 282 lwke~~ 287 (299)
T KOG1332|consen 282 LWKENV 287 (299)
T ss_pred EEEeCC
Confidence 998653
No 100
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=213.85 Aligned_cols=282 Identities=17% Similarity=0.256 Sum_probs=212.5
Q ss_pred CCEEEEeeCCCcEEEeeCCc--------cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccc
Q 012007 133 GDLLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSL 204 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~--------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 204 (473)
...||.+.+||.|.++|..+ .+..+..|.++|..+.|-|....|++++.|.++++||+.........
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~----- 138 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR----- 138 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-----
Confidence 45899999999999998652 24556779999999999997788999999999999999887643321
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCe---------------
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCK--------------- 268 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~--------------- 268 (473)
..++|...|.+++|.+ +...|++|+.||.|.|||++-..
T Consensus 139 -------------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~ 193 (720)
T KOG0321|consen 139 -------------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH 193 (720)
T ss_pred -------------------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence 2346999999999999 55689999999999999986322
Q ss_pred ------------eeEEeecCCCc----eeEEEEcCCCEEEEEeC-CCcEEEEeCcccCCCcceeeeee--eccC---Ccc
Q 012007 269 ------------CLESINAHDDA----INSVVAGFDSLVFTGSA-DGTVKVWRRELQGKGTKHCLAQV--LLKH---ENA 326 (473)
Q Consensus 269 ------------~~~~~~~~~~~----v~~l~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~--~~~~---~~~ 326 (473)
.+...+++... |+.+.|-.+..|++++. |+.|+|||++.......+..... +..| ...
T Consensus 194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G 273 (720)
T KOG0321|consen 194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG 273 (720)
T ss_pred cCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence 01112233333 44566666668888887 99999999985433222222211 2222 345
Q ss_pred EEEEEEccCCCEEEEeCCCCcEEEEecCCcc-cccceeecCcce----EEEEEecCCEEEEEeCCCcEEEEecCCCCcee
Q 012007 327 VTALAVNQESAVVYCGSSDGLVNFWECEKHL-SHGGVLRGHKMA----VLCLAAAGNLVFSGSADRNICLWRREESGAHS 401 (473)
Q Consensus 327 v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~----v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 401 (473)
++++.....|.+|++.+.|+.|++|++.... .+...+.++... -.+++|++.+|++|+.|...++|.+.+. ..
T Consensus 274 ~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~--e~ 351 (720)
T KOG0321|consen 274 QVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP--EA 351 (720)
T ss_pred eEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc--cC
Confidence 7888888889999999999999999997532 233334444322 2567899999999999999999999875 45
Q ss_pred EEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 402 CLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 402 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
....+.+|.-.|++++|.|.... -++|+++|-+++||++..+...
T Consensus 352 ~~~~l~Ght~eVt~V~w~pS~~t------------~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 352 PPALLLGHTREVTTVRWLPSATT------------PVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred ChhhhhCcceEEEEEeeccccCC------------CceeeccCcceEEEeccCchhh
Confidence 67778899999999999997653 4888899999999999765433
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=196.28 Aligned_cols=279 Identities=18% Similarity=0.264 Sum_probs=229.0
Q ss_pred EEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeec
Q 012007 135 LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSS 214 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (473)
.+++.-.+++++. ..++.+.+|...|..++.......+.+++.|.+.+||.++++.+.....
T Consensus 126 rivssFk~~t~~~----~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-------------- 187 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF----RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT-------------- 187 (481)
T ss_pred hheeeecCCceeE----eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec--------------
Confidence 3445555555322 4466788999999999998888899999999999999999998765544
Q ss_pred CCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc------CC----------------------
Q 012007 215 VNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI------SD---------------------- 266 (473)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~------~~---------------------- 266 (473)
+|.+.|++|+|++.+.++++++.|++-.||.. ..
T Consensus 188 ------------------GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d 249 (481)
T KOG0300|consen 188 ------------------GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRD 249 (481)
T ss_pred ------------------ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccc
Confidence 69999999999999999999999999999951 10
Q ss_pred ------------CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc
Q 012007 267 ------------CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN 333 (473)
Q Consensus 267 ------------~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 333 (473)
..++..+.+|...|.+..|...+ .+++++.|.+..+||++++ .++..+.+|....+.++-+
T Consensus 250 ~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg------e~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 250 TDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG------EVVNILTGHDSELTHCSTH 323 (481)
T ss_pred cccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC------ceeccccCcchhccccccC
Confidence 01456778899999999998777 8999999999999999743 3578899999999999999
Q ss_pred cCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCc
Q 012007 334 QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGP 412 (473)
Q Consensus 334 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 412 (473)
|..+++++.+.|-+.++||++........+.||...|++..+. +..+++|+.|.+|++||+++. ..++.++.. ..+
T Consensus 324 ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNM--RsplATIRt-dS~ 400 (481)
T KOG0300|consen 324 PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNM--RSPLATIRT-DSP 400 (481)
T ss_pred CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccc--cCcceeeec-CCc
Confidence 9999999999999999999997777778999999999999987 788999999999999999985 345666654 568
Q ss_pred eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCCccccccc
Q 012007 413 VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSPTQMRRQ 471 (473)
Q Consensus 413 V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~~~~~~~~ 471 (473)
++.++.+..++ +++.--++..|++||++.......+-......+++
T Consensus 401 ~NRvavs~g~~-------------iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRM 446 (481)
T KOG0300|consen 401 ANRVAVSKGHP-------------IIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRM 446 (481)
T ss_pred cceeEeecCCc-------------eEEeccCCceEEEEecCCCccccCCccccccccee
Confidence 99999998887 78888888899999998664333332233334443
No 102
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.4e-25 Score=187.89 Aligned_cols=263 Identities=17% Similarity=0.235 Sum_probs=200.8
Q ss_pred ccEEEEEec--CCEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEe
Q 012007 124 GHIYSLAAS--GDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKR 200 (473)
Q Consensus 124 ~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 200 (473)
+.|.++.++ +..|++++.||.+++||... .+.....|..++.+++|.++ ..+++|+.||.|+.+|+.+++......
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~igt 92 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIGT 92 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeecc
Confidence 445566654 66777888999999999763 34444558999999999874 489999999999999999887544332
Q ss_pred eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCce
Q 012007 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI 280 (473)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v 280 (473)
|..+|.||.+.+....+++|++|++|++||.+.......+.. ...|
T Consensus 93 ---------------------------------h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkV 138 (323)
T KOG1036|consen 93 ---------------------------------HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKV 138 (323)
T ss_pred ---------------------------------CCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceE
Confidence 999999999999889999999999999999998666555553 3478
Q ss_pred eEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc---c
Q 012007 281 NSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH---L 357 (473)
Q Consensus 281 ~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---~ 357 (473)
.++... ++.|++|+.|..+.+||++..... .......-+..+.++++.|++.=+++++-||.|.+=.++.. .
T Consensus 139 y~~~v~-g~~LvVg~~~r~v~iyDLRn~~~~----~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 139 YCMDVS-GNRLVVGTSDRKVLIYDLRNLDEP----FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred EEEecc-CCEEEEeecCceEEEEEcccccch----hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence 888764 447888999999999999854321 12223344567899999998888899999999887544432 1
Q ss_pred cccceeecCc---------ceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCc
Q 012007 358 SHGGVLRGHK---------MAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426 (473)
Q Consensus 358 ~~~~~~~~~~---------~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 426 (473)
.....++.|. -+|.++++ --..|++|+.||.|.+||+.+ .+.+..+......|..++|+.++.
T Consensus 214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~---rKrl~q~~~~~~SI~slsfs~dG~--- 287 (323)
T KOG1036|consen 214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN---RKRLKQLAKYETSISSLSFSMDGS--- 287 (323)
T ss_pred hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc---hhhhhhccCCCCceEEEEeccCCC---
Confidence 1222334443 23444544 466899999999999999988 566777777777899999999998
Q ss_pred ccccCCCccEEEEEee
Q 012007 427 EYHQKGDQRWTVYSGS 442 (473)
Q Consensus 427 ~~~~~~~~~~~l~s~s 442 (473)
.||.++
T Consensus 288 ----------~LAia~ 293 (323)
T KOG1036|consen 288 ----------LLAIAS 293 (323)
T ss_pred ----------eEEEEe
Confidence 788876
No 103
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.5e-26 Score=191.51 Aligned_cols=261 Identities=17% Similarity=0.231 Sum_probs=187.7
Q ss_pred ccccccccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 152 KEFSGFKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
+.+..-......|.+|+|+| ...+|+.++.||+||+|+++......-..
T Consensus 18 kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka------------------------------ 67 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA------------------------------ 67 (347)
T ss_pred cceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchh------------------------------
Confidence 33333445678899999999 45567789999999999998742111111
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC---EEEEEeCCCcEEEEeCcc
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~---~l~s~~~dg~i~vwd~~~ 307 (473)
...|.++|.+++|+.+|..+++|+.|+.+++||+.++ .+..+..|.++|.++.|-+.. .|++|+.|.+|++||.+.
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence 1139999999999999999999999999999999999 456777899999999987654 799999999999999984
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce-e--ecCcceEEEEEecCCEEEEEe
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV-L--RGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~--~~~~~~v~~~~~~~~~l~s~~ 384 (473)
... +.. ..-...+.++.. ...+++++..+..|.+|+++++....+. . ..+.....++..+....+.|+
T Consensus 147 ~~p------v~t-~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs 217 (347)
T KOG0647|consen 147 SNP------VAT-LQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS 217 (347)
T ss_pred CCe------eee-eeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee
Confidence 321 111 112344555544 3457888999999999999764322111 1 112233344445666679999
Q ss_pred CCCcEEEEecCCCCceeEEEEecCCC---------CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGHT---------GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h~---------~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
-+|.+.|..++.+.. ..-..++.|. ..|++|+|+|... .|+|+|.||++.+||-...
T Consensus 218 iEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-------------tlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 218 IEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-------------TLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred ecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccc-------------eEEEecCCceEEEecchhh
Confidence 999999999987422 2233344443 2688999999877 7999999999999998776
Q ss_pred CCCccCCCCcc
Q 012007 456 APDLKGLHSPT 466 (473)
Q Consensus 456 ~~~~~~~~~~~ 466 (473)
.++......+.
T Consensus 284 ~kLk~s~~~~q 294 (347)
T KOG0647|consen 284 TKLKTSETHPQ 294 (347)
T ss_pred hhhhccCcCCC
Confidence 65544333333
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-24 Score=185.77 Aligned_cols=251 Identities=15% Similarity=0.214 Sum_probs=197.0
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
+.+....+.|++|.|+++|.+|++++.|.++++||..+++....... +
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s--------------------------------k 55 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS--------------------------------K 55 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec--------------------------------c
Confidence 44555678899999999999999999999999999998876554432 4
Q ss_pred cCCeeEEEEcCCCCEEEEEeC--CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 235 YDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
.-.|..++|....+.++.++. |.+|+..++.+.+.++.+.+|...|+.|..+|.+ .+++++.|++|++||++....
T Consensus 56 kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c- 134 (311)
T KOG1446|consen 56 KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC- 134 (311)
T ss_pred cccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-
Confidence 446777888776676776665 8899999999999999999999999999999987 999999999999999984321
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc-ccccceee-----cCcceEEEEEecCCEEEEEeC
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH-LSHGGVLR-----GHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~-----~~~~~v~~~~~~~~~l~s~~~ 385 (473)
.... +...-..++|+|+|-++|++.....|++||++.. ..+...+. ...-..+.++++|++|+.+..
T Consensus 135 ----qg~l---~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~ 207 (311)
T KOG1446|consen 135 ----QGLL---NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN 207 (311)
T ss_pred ----ceEE---ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC
Confidence 1111 1223345899999999999998889999999853 22211111 122344778899999999999
Q ss_pred CCcEEEEecCCCCceeEEEEecCCCCc---eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 386 DRNICLWRREESGAHSCLAVLTGHTGP---VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~h~~~---V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
.+.+++.|.-.+ ..+..+.++... -...+|.||++ ++++|+.||+|.+|++.++.+....
T Consensus 208 ~s~~~~lDAf~G---~~~~tfs~~~~~~~~~~~a~ftPds~-------------Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 208 ASFIYLLDAFDG---TVKSTFSGYPNAGNLPLSATFTPDSK-------------FVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred CCcEEEEEccCC---cEeeeEeeccCCCCcceeEEECCCCc-------------EEEEecCCCcEEEEEcCCCcEeeEe
Confidence 999999999884 456666655432 26788999999 8999999999999999888765443
No 105
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=207.36 Aligned_cols=264 Identities=17% Similarity=0.211 Sum_probs=197.5
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
..+++|+..|.++++.|.|-.|++|+.|-.|++||+..........-.-.| ..
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P---------------------------~E 213 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP---------------------------CE 213 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc---------------------------cc
Confidence 457889999999999999999999999999999999876543322111111 14
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE------------eecCCCceeEEEEcCCC--EEEEEeCCCcE
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES------------INAHDDAINSVVAGFDS--LVFTGSADGTV 300 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~------------~~~~~~~v~~l~~~~~~--~l~s~~~dg~i 300 (473)
...|.++.|++.+..|++.+.....+|+|-...+.+.. -++|...++|.+|+|.. .+++++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 56799999999999999999889999999544333322 25788999999999986 89999999999
Q ss_pred EEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc--ccceeecCcc--eEEE--EE
Q 012007 301 KVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS--HGGVLRGHKM--AVLC--LA 374 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~--~v~~--~~ 374 (473)
++||+....+...........+..-.++.++|++++.+||+|+.||.|.+|+...... ...+...|.. .|+| |+
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 9999975432111111122234556789999999999999999999999999864322 2234445655 5555 45
Q ss_pred ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC--CCceeEEEEecCCCCCcccccCCCccEEEEEee------CCCc
Q 012007 375 AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH--TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS------LDKS 446 (473)
Q Consensus 375 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s------~Dg~ 446 (473)
++|++|++-+.|+++++||++.. .+++....+- .-+-+.++|+|+.+ +|++|. ..|.
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~--kkpL~~~tgL~t~~~~tdc~FSPd~k-------------li~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQF--KKPLNVRTGLPTPFPGTDCCFSPDDK-------------LILTGTSAPNGMTAGT 438 (641)
T ss_pred cccchhhhccCCCceeeeecccc--ccchhhhcCCCccCCCCccccCCCce-------------EEEecccccCCCCCce
Confidence 67999999999999999999975 3455554443 33568899999998 888876 3467
Q ss_pred EEEEEcCCCCCCcc
Q 012007 447 VKVWRVSEHAPDLK 460 (473)
Q Consensus 447 v~iW~i~~~~~~~~ 460 (473)
+.+||-.+.....+
T Consensus 439 L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 439 LFFFDRMTLDTVYK 452 (641)
T ss_pred EEEEeccceeeEEE
Confidence 88888776554444
No 106
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=3e-26 Score=203.88 Aligned_cols=251 Identities=19% Similarity=0.251 Sum_probs=200.8
Q ss_pred eeeeeeecccEEEEEe---cCCEEEEeeCCCcEEEeeCCcc------------ccccccCcccEEEEEEeCCC-CEEEEE
Q 012007 116 IGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKE------------FSGFKSNSGLVKAIIISGDS-NKIFTG 179 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~---~g~~l~tg~~dg~i~vwd~~~~------------~~~~~~h~~~V~~l~~s~~~-~~l~s~ 179 (473)
+.....|.|.|..+.. +..++|+++..+.|.|||..+. -..+.+|.+.=+.|+|++.. -+|++|
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 4444568888877653 4778999999999999985421 12678898888889998864 479999
Q ss_pred eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCC
Q 012007 180 HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKT 258 (473)
Q Consensus 180 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~ 258 (473)
+.|+.|.+||+........ . ........+|.+.|..++|++ +..+|++++.|+.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~-~------------------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDK-V------------------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred cCCCcEEEEeccccccCCc-c------------------------ccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence 9999999999986643200 0 001123336999999999999 5678999999999
Q ss_pred EEEEEcC--CCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc
Q 012007 259 LKVWRIS--DCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 259 v~vwd~~--~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
+.|||++ +.++....++|.+.|+|++|+|-+ .|++|+.|++|++||+|. -......+.+|...|..+.|+|
T Consensus 252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn-----L~~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN-----LNKPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh-----cccCceeccCCCcceEEEEeCC
Confidence 9999999 566777888999999999999876 899999999999999984 3336788999999999999999
Q ss_pred C-CCEEEEeCCCCcEEEEecCCcc-------------cccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCC
Q 012007 335 E-SAVVYCGSSDGLVNFWECEKHL-------------SHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 335 ~-~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~ 396 (473)
. ...|++++.|+.+.+||+..-. .+...-.||...|..++++ .-.|++.+.|+.++||.+..
T Consensus 327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 5 4789999999999999986421 1224556899999998887 44788999999999999874
No 107
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=1.1e-24 Score=196.01 Aligned_cols=305 Identities=17% Similarity=0.208 Sum_probs=217.4
Q ss_pred ccEEEEEec-CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEe
Q 012007 124 GHIYSLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKR 200 (473)
Q Consensus 124 ~~V~~~~~~-g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 200 (473)
..|.|+.|- +.-++||..+|.|.||+.. +..+....|.+.|.+++...+| .|++|+.|..|..||-.-.+......
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~y~k~r~~el 325 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWDDNYRKLRETEL 325 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc-cEeecCccceEEeccccccccccccC
Confidence 569999987 4468899999999999864 3344445899999999999999 55569999999999932222111111
Q ss_pred eccccc--------cceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE
Q 012007 201 VGSLPT--------FKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272 (473)
Q Consensus 201 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 272 (473)
...... ..-++....+....-.+.+.......+|.+....++.+|+.+++++++.|+.+++|+ ..+++.+
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt 403 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT 403 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE
Confidence 100000 112233333333344556666677889999999999999999999999999999999 4555544
Q ss_pred eecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEe
Q 012007 273 INAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352 (473)
Q Consensus 273 ~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd 352 (473)
.. -.+++.|+.|+|.+.++.|...|...+.|.++ ..++..-.. ..++++++|+|+|.+||.|+.|+.|+||.
T Consensus 404 ~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~------~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 404 KI-IEDPAECADFHPSGVVAVGTATGRWFVLDTET------QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred EE-ecCceeEeeccCcceEEEeeccceEEEEeccc------ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 43 46788999999999999999999999999873 223333333 88999999999999999999999999998
Q ss_pred cCCc-ccccceeecCcceEEE--EEecCCEEEEEeCCCcEEEE-------------------------------------
Q 012007 353 CEKH-LSHGGVLRGHKMAVLC--LAAAGNLVFSGSADRNICLW------------------------------------- 392 (473)
Q Consensus 353 ~~~~-~~~~~~~~~~~~~v~~--~~~~~~~l~s~~~dg~i~iw------------------------------------- 392 (473)
+... ......-+.+...++. ++.|+++|.+-+.|-.|..|
T Consensus 476 Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~ 555 (626)
T KOG2106|consen 476 VSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDIN 555 (626)
T ss_pred ECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHH
Confidence 7642 2222222222234433 33445555555555555555
Q ss_pred -----------------------ecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEE
Q 012007 393 -----------------------RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKV 449 (473)
Q Consensus 393 -----------------------d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~i 449 (473)
...-.........+.+|.+-|++++|.-+.. .|++.+.|.+|..
T Consensus 556 a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~-------------~li~tg~D~Si~q 622 (626)
T KOG2106|consen 556 AVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS-------------HLISTGKDTSIMQ 622 (626)
T ss_pred HhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCc-------------eEEecCCCceEEE
Confidence 3332223344556778999999999999887 6777779999999
Q ss_pred EEc
Q 012007 450 WRV 452 (473)
Q Consensus 450 W~i 452 (473)
|++
T Consensus 623 W~l 625 (626)
T KOG2106|consen 623 WRL 625 (626)
T ss_pred EEe
Confidence 986
No 108
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.4e-25 Score=204.12 Aligned_cols=308 Identities=16% Similarity=0.211 Sum_probs=229.9
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCC--EEEEEeCCCeEEEEe
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSN--KIFTGHQDGKIRIWK 189 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~--~l~s~~~dg~i~vwd 189 (473)
-..+.||++.|.+++.+ |.+||+|+.||+||||.+. .++..+. -.+.|.||+|+|.+. .||++-.+ .+.|-+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEeC
Confidence 44678999999998855 9999999999999999865 4444444 345899999999874 44444434 466665
Q ss_pred CCCCCeeeEEeeccccccceeEeec---CCC-cceEEE-------eecceeeEeeccCCeeEEEEcCCCCEEEEEeCC--
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSS---VNP-KNYVEV-------RRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD-- 256 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-- 256 (473)
..-+........ .+.+... ..+ ...+.. ......+.+.|...|..+.|+..|.||++...+
T Consensus 471 p~~G~~~e~~~t------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 471 PIFGDRLEVGPT------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ccccchhhhcch------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 443321111000 0000000 000 001110 111235677899999999999999999998654
Q ss_pred -CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc
Q 012007 257 -KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 257 -g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
..|.|+++...+...-|....+.|.++.|+|.. +|+++ ....|++||+. .+.++..+......|..++++|
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-Tq~~vRiYdL~------kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-TQRSVRIYDLS------KQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-eccceEEEehh------HHHHHHHHhcCCeeeeeeeecC
Confidence 469999998877777777778899999999988 55544 46789999995 4556666777778899999999
Q ss_pred CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCC--EEEEEeCCCcEEEEecC------CCCceeEEEEe
Q 012007 335 ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN--LVFSGSADRNICLWRRE------ESGAHSCLAVL 406 (473)
Q Consensus 335 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~------~~~~~~~~~~~ 406 (473)
.|..|++|+.|+.+..||+.-...+.+.+..|...+..+++.++ ++++|+.||++.||--. ......++..+
T Consensus 618 ~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 99999999999999999999877788888999999999988765 79999999999998432 22335678889
Q ss_pred cCCCCc----eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 407 TGHTGP----VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 407 ~~h~~~----V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
.+|... |..+.|+|... .|+++|.||+|++|.
T Consensus 698 ~gH~~~~~~gVLd~~wHP~qp-------------WLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 698 RGHEKTNDLGVLDTIWHPRQP-------------WLFSAGADGTIRLFT 733 (733)
T ss_pred cCceeecccceEeecccCCCc-------------eEEecCCCceEEeeC
Confidence 999765 89999999998 899999999999993
No 109
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.6e-25 Score=184.92 Aligned_cols=254 Identities=14% Similarity=0.200 Sum_probs=196.1
Q ss_pred ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 158 KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 158 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
.+|..-|.++.|...|+++|+|+.|++|+|||........... ..+..|.+.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----------------------------s~Wrah~~S 61 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----------------------------SSWRAHDGS 61 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----------------------------eeEEecCCc
Confidence 4588999999999999999999999999999975543221111 122349999
Q ss_pred eeEEEEcC--CCCEEEEEeCCCCEEEEEcC---------CCeeeEEeecCCCceeEEEEcCCC---EEEEEeCCCcEEEE
Q 012007 238 VSCLSLNA--EQGLLYSGSWDKTLKVWRIS---------DCKCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVW 303 (473)
Q Consensus 238 v~~l~~~~--~~~~l~s~s~dg~v~vwd~~---------~~~~~~~~~~~~~~v~~l~~~~~~---~l~s~~~dg~i~vw 303 (473)
|..+.|.+ -|+.+++++.|+++.||.-. ......++......|+.+.|.|.. .+++++.||.+|||
T Consensus 62 i~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 62 IWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY 141 (361)
T ss_pred EEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence 99999976 58999999999999999751 122345666778899999999875 79999999999999
Q ss_pred eCcccCCCcceeeeeeec-------cCCccEEEEEEccC---CCEEEEeCCC-----CcEEEEecCCc---ccccceeec
Q 012007 304 RRELQGKGTKHCLAQVLL-------KHENAVTALAVNQE---SAVVYCGSSD-----GLVNFWECEKH---LSHGGVLRG 365 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~~---~~~l~~~~~d-----g~i~iwd~~~~---~~~~~~~~~ 365 (473)
+.-.........+...+. .+.....|+.|+|. ..+|++|+.+ +.++||..... ......+.+
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 876443333444433333 56778899999984 4678888776 57899976542 233345668
Q ss_pred CcceEEEEEec------CCEEEEEeCCCcEEEEecCCC-----------------CceeEEEEecCCCCceeEEEEecCC
Q 012007 366 HKMAVLCLAAA------GNLVFSGSADRNICLWRREES-----------------GAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 366 ~~~~v~~~~~~------~~~l~s~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
|..+|..+++. -.+||+++.|| |+||.+... -..+.+..+.+|++.|..+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 99999877764 24799999999 999998731 1235567788999999999999999
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
. +|++.|.||.||+|+..
T Consensus 301 t-------------iLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 301 T-------------ILSSTGDDGCVRLWKAN 318 (361)
T ss_pred e-------------EEeecCCCceeeehhhh
Confidence 8 99999999999999865
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.1e-25 Score=197.07 Aligned_cols=249 Identities=16% Similarity=0.205 Sum_probs=202.0
Q ss_pred ccccceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 111 SCNGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 111 ~~~~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
.++.++.++.||...|+.+.++ ...+++++.|..|+||... ........|.++|+.+..+|.|.||++++.||...
T Consensus 249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~ 328 (506)
T KOG0289|consen 249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWA 328 (506)
T ss_pred chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEE
Confidence 4567889999999999998876 5579999999999999854 55667788999999999999999999999999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
+.|+.++......... ...-.+++.+|+|||.+|.+|..|+.|+|||+.+
T Consensus 329 Fsd~~~g~~lt~vs~~------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDE------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred EEEccCCcEEEEEeec------------------------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 9999988754433211 0123489999999999999999999999999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC
Q 012007 267 CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 345 (473)
+..+..|.+|.++|..+.|+.+| ++++++.|+.|++||+|... ............+.++.|.+.|.+|+.++.|
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-----n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-----NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-----ccceeeccccccceeEEEcCCCCeEEeecce
Confidence 99999999999999999999999 88999999999999998433 2222233334479999999999999999887
Q ss_pred CcEEEEecCC-cccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEec
Q 012007 346 GLVNFWECEK-HLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRR 394 (473)
Q Consensus 346 g~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~ 394 (473)
=+|++++-.+ .......+..|.+...++.+. ..++++++.|..++++.+
T Consensus 454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 7777776433 233334455566666666654 779999999999888754
No 111
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=2e-25 Score=207.89 Aligned_cols=328 Identities=20% Similarity=0.285 Sum_probs=241.6
Q ss_pred cceeeeeeecccEEEEEec---C--CEEEEeeCCCcEEEeeCC--c------------------------cc-------c
Q 012007 114 GLIGSIVRKEGHIYSLAAS---G--DLLYTGSDSKNIRVWKNL--K------------------------EF-------S 155 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~---g--~~l~tg~~dg~i~vwd~~--~------------------------~~-------~ 155 (473)
..+..|.||.+.|.+++|. + -+||+++.|..||||.+. . .+ .
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 4578899999999999985 2 389999999999999521 0 00 1
Q ss_pred ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC--eeeEEeeccccc-cceeEeecCCCcc--eE---------
Q 012007 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN--ASVHKRVGSLPT-FKDYVKSSVNPKN--YV--------- 221 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~--~~--------- 221 (473)
.+.+|...|.++.|+|.+..|++++.|.++.+|.-+... -....+++.... ...+.....++.. ++
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 245899999999999999999999999999999887653 333344443331 1112222222221 11
Q ss_pred EEeec------ceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC----CeeeEEeecCCCceeEEEEcC-CCE
Q 012007 222 EVRRN------RSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD----CKCLESINAHDDAINSVVAGF-DSL 290 (473)
Q Consensus 222 ~~~~~------~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~----~~~~~~~~~~~~~v~~l~~~~-~~~ 290 (473)
..... .....-||.+.|+.++|+|.|.+|++.+.|.+-+++---. ...+..-+.|...++|+.+-+ +-.
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 11111 1223347999999999999999999999999999986531 122333456888999999988 558
Q ss_pred EEEEeCCCcEEEEeCcc-------------------------------------------cCCC----------------
Q 012007 291 VFTGSADGTVKVWRREL-------------------------------------------QGKG---------------- 311 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~-------------------------------------------~~~~---------------- 311 (473)
+++|.....+|+|+... ++..
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 89999999999996420 0000
Q ss_pred -----------cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-----cEEEEecCCcccccceeecCcceEEEE--
Q 012007 312 -----------TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-----LVNFWECEKHLSHGGVLRGHKMAVLCL-- 373 (473)
Q Consensus 312 -----------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~~-- 373 (473)
........+.+|...|.+++.+|+++++|+++... .|++|+..+..+. +.+.+|...|+.+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~-~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV-QELEGHSLTVTRLAF 580 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh-heecccceEEEEEEE
Confidence 00011234678999999999999999999998654 5899998875444 4788999988655
Q ss_pred EecCCEEEEEeCCCcEEEEecCCCCc-eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 374 AAAGNLVFSGSADRNICLWRREESGA-HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 374 ~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
++||++|++.+.|+++.+|....... .......+.|+.-|.+..|+|++. +|+|+|.|++|+||..
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-------------~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-------------YFATASRDKKVKVWEE 647 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-------------eeEEecCCceEEEEec
Confidence 56799999999999999999865321 122445788999999999999998 8999999999999999
Q ss_pred CCC
Q 012007 453 SEH 455 (473)
Q Consensus 453 ~~~ 455 (473)
.+.
T Consensus 648 ~~~ 650 (764)
T KOG1063|consen 648 PDL 650 (764)
T ss_pred cCc
Confidence 877
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=199.74 Aligned_cols=273 Identities=20% Similarity=0.323 Sum_probs=210.4
Q ss_pred EeeCC-CcEEEeeCCcc--ccccccC-cccEEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 138 TGSDS-KNIRVWKNLKE--FSGFKSN-SGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 138 tg~~d-g~i~vwd~~~~--~~~~~~h-~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
+++.| .++.+||+... +..+++. ...-.++..- .+.|++++.. -..|.+|.+..........
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~------------ 78 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI------------ 78 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc------------
Confidence 33434 45999997643 3344433 1111111111 2347776654 3578999987665433111
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EE
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV 291 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l 291 (473)
--.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.|+ +|
T Consensus 79 --------------------v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 79 --------------------VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred --------------------ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 155789999999999999999899999999999999999999999999999999988 99
Q ss_pred EEEeCCCcEEEEeCccc---CCCcceeeeeeeccCCccEEEEEEccCC--CEEEEeCCCCcEEEEecCCcccccceeecC
Q 012007 292 FTGSADGTVKVWRRELQ---GKGTKHCLAQVLLKHENAVTALAVNQES--AVVYCGSSDGLVNFWECEKHLSHGGVLRGH 366 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 366 (473)
++|+.||.|.+|.+..- .......+...+..|.-+|+++...+.+ .+|++++.|.++++||+..+..+.......
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 99999999999986421 1112344567788999999999988754 689999999999999999887776666666
Q ss_pred cceEEEEEecCCEEEEEeCCCcEEEEecCCCC-------------ceeEEEEecCCCC--ceeEEEEecCCCCCcccccC
Q 012007 367 KMAVLCLAAAGNLVFSGSADRNICLWRREESG-------------AHSCLAVLTGHTG--PVKCLAVEEDRDHDHEYHQK 431 (473)
Q Consensus 367 ~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~h~~--~V~~l~~~~~~~~~~~~~~~ 431 (473)
....+.++|.+..+++|+.+|.|.+.++.... ....+..+.||.+ .|+|++++-|+.
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-------- 290 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-------- 290 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc--------
Confidence 66667777889999999999999998876422 1234667889988 999999999999
Q ss_pred CCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 432 GDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 432 ~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+|++|+.||.|+|||+.+.+
T Consensus 291 -----lLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 291 -----LLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred -----EEEeeCCCCCEEEEecchHH
Confidence 99999999999999998754
No 113
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.6e-25 Score=206.96 Aligned_cols=241 Identities=21% Similarity=0.317 Sum_probs=200.1
Q ss_pred ceeeeeee-cccEEEEEec--CCEEEEeeCCCcEEEeeCC--cccccccc-CcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 115 LIGSIVRK-EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKS-NSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 115 ~~~~l~~h-~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
.+..|..- +..|+++.++ |.+||+|..+|.|.|||.. +.+..+.+ |...|-+++|. +..+.+|+.|+.|..+
T Consensus 208 ~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~ 285 (484)
T KOG0305|consen 208 SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNH 285 (484)
T ss_pred ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEE
Confidence 34444433 7889998876 9999999999999999955 66777787 99999999997 5589999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
|+...+.... . ..+|...|..++|++|+.+|++|+.|+.+.|||....+
T Consensus 286 dvR~~~~~~~-~------------------------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 286 DVRISQHVVS-T------------------------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred EEecchhhhh-h------------------------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 9987654333 1 12499999999999999999999999999999998889
Q ss_pred eeEEeecCCCceeEEEEcCCC--EEEEEe--CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE--e
Q 012007 269 CLESINAHDDAINSVVAGFDS--LVFTGS--ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC--G 342 (473)
Q Consensus 269 ~~~~~~~~~~~v~~l~~~~~~--~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~ 342 (473)
++..+..|..+|.+++|+|-. +||+|+ .|+.|++||...+.. .....-...|..|.|++..+.|++ |
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-------i~~vdtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-------IDSVDTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-------ecccccCCceeeEEEcCCCCEEEEecC
Confidence 999999999999999999864 888764 599999999974321 122334678999999998866665 4
Q ss_pred CCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCC
Q 012007 343 SSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
..++.|.||+..+ ......+.+|...|+.+ +|||..+++|+.|.++++|++-.
T Consensus 408 ~s~n~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 408 YSENQITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCCcEEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 5678999999988 45557888999999765 57899999999999999999877
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.7e-26 Score=215.35 Aligned_cols=280 Identities=17% Similarity=0.212 Sum_probs=210.0
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCcc------ccccccC---cccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeee
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKE------FSGFKSN---SGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASV 197 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~------~~~~~~h---~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~ 197 (473)
++..+-..|+.++. ..++||..... ...++.. .-.+..|.|.. +.++|||++..|.|.+||+.......
T Consensus 46 s~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk 124 (839)
T KOG0269|consen 46 SVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNK 124 (839)
T ss_pred eecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccch
Confidence 34455556777765 46778753311 1111111 12355677753 45799999999999999998631100
Q ss_pred EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecC
Q 012007 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAH 276 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 276 (473)
....+..|...+.++.|++ ...+|++|+.||+|++||++..+...++.+.
T Consensus 125 -----------------------------~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n 175 (839)
T KOG0269|consen 125 -----------------------------LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN 175 (839)
T ss_pred -----------------------------hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc
Confidence 0011124999999999998 5679999999999999999999999999989
Q ss_pred CCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 277 DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 277 ~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
...|..+.|+|.. .++++...|.+++||++ ........+..|.++|.++.|+|++.+||+|+.|+.|+|||..
T Consensus 176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR-----qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLR-----QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred chhhhceeeccCCCceEEEecCCceEEEeecc-----CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 9999999998874 89999999999999998 4444567788999999999999999999999999999999998
Q ss_pred CcccccceeecCcceEEEEE--ec-CCEEEEEe--CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccc
Q 012007 355 KHLSHGGVLRGHKMAVLCLA--AA-GNLVFSGS--ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYH 429 (473)
Q Consensus 355 ~~~~~~~~~~~~~~~v~~~~--~~-~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~ 429 (473)
..............++.++. |. ..+|++++ .|-.|+|||++.. .-+..++..|...++.++|......
T Consensus 251 ~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W~~~d~~----- 323 (839)
T KOG0269|consen 251 DSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--YIPYATFLEHTDSVTGIAWDSGDRI----- 323 (839)
T ss_pred CCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc--cccceeeeccCccccceeccCCCce-----
Confidence 64433222222333454554 44 45677775 4778999999874 6778889999999999999885443
Q ss_pred cCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 430 QKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 430 ~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.|.+++.||+|..-.+.+..
T Consensus 324 -------~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 324 -------NLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred -------eeEeecCccHHHHhhhhccc
Confidence 79999999998776665543
No 115
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=206.54 Aligned_cols=301 Identities=19% Similarity=0.306 Sum_probs=234.9
Q ss_pred cccceeeeeeecccEEEEEecC--CEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCE-EEEEeCCCeEE
Q 012007 112 CNGLIGSIVRKEGHIYSLAASG--DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNK-IFTGHQDGKIR 186 (473)
Q Consensus 112 ~~~~~~~l~~h~~~V~~~~~~g--~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~-l~s~~~dg~i~ 186 (473)
.+.++-++.++...|+++.+.. +.+|.|..+|+|.|+++. +.+..++...+.|+.+.|..||+. |++|+..|.+.
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~ 270 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMA 270 (910)
T ss_pred cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEE
Confidence 3567888999999999998874 589999999999999965 667777755699999999999965 66777779999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
+||++..+....... .|.+.|....|.+....+++++.|..+++|=..+
T Consensus 271 ~wDLe~kkl~~v~~n-------------------------------ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 271 FWDLEKKKLINVTRN-------------------------------AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EEEcCCCeeeeeeec-------------------------------cccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 999998876544432 2888999999999999999999999999885543
Q ss_pred --C--eeeEEeecCCCceeEEEEcCC-C-EEEEEeCCCcEEEEeCccc--------------------------------
Q 012007 267 --C--KCLESINAHDDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQ-------------------------------- 308 (473)
Q Consensus 267 --~--~~~~~~~~~~~~v~~l~~~~~-~-~l~s~~~dg~i~vwd~~~~-------------------------------- 308 (473)
| +.++.-.+|..+..|+.+... + .+.+++.|++++.+++...
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 3 456666789999999988633 3 6778888887777754210
Q ss_pred ---------------------------------CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC
Q 012007 309 ---------------------------------GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 309 ---------------------------------~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
..+........+......+++++.++-|++.+.|.+.|.|-+|+++.
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS 479 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc
Confidence 00000000001112336789999999999999999999999999998
Q ss_pred cccccce--eecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCC---------------------------------
Q 012007 356 HLSHGGV--LRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESG--------------------------------- 398 (473)
Q Consensus 356 ~~~~~~~--~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~--------------------------------- 398 (473)
+...... ...|..+|+.++.| ++.+++++.+|.+++||.....
T Consensus 480 Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 480 GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEE
Confidence 7655433 35899999999988 6679999999999999987531
Q ss_pred -----ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 399 -----AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 399 -----~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
..+.++.+.||.+.|++++|+||++ .|++++.|++|++||+.++.
T Consensus 560 vvD~~t~kvvR~f~gh~nritd~~FS~Dgr-------------WlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGHGNRITDMTFSPDGR-------------WLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred EEEchhhhhhHHhhccccceeeeEeCCCCc-------------EEEEeecCCcEEEEeccCcc
Confidence 0112345678999999999999999 89999999999999999875
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=8.6e-26 Score=210.44 Aligned_cols=242 Identities=24% Similarity=0.392 Sum_probs=204.5
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+..+.+.+|...|..+++.++. .+++++.||++++|+-..++........
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~----------------------------- 54 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE----------------------------- 54 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc-----------------------------
Confidence 3446788999999999987655 8999999999999998666544322221
Q ss_pred eeccCCeeE-EEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccC
Q 012007 232 IRHYDAVSC-LSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 232 ~~~~~~v~~-l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
+|.+.|.+ +++.+ ++..|++|+.|++|.+|.+.+..++..+++|...|.++....++.+++|+.|.++++|...
T Consensus 55 -~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--- 130 (745)
T KOG0301|consen 55 -GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--- 130 (745)
T ss_pred -cCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch---
Confidence 36666666 77775 5567999999999999999999999999999999999998888899999999999999764
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe-cCCEEEEEeCCCc
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA-AGNLVFSGSADRN 388 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~ 388 (473)
.+...+.+|...|.+++.-|++ .+++|+.|.+|++|.-. .....+.+|...|..+.. ++..|++++.||.
T Consensus 131 -----~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~ 201 (745)
T KOG0301|consen 131 -----ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGS 201 (745)
T ss_pred -----hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCCCeEeecCCce
Confidence 2345589999999999999988 77899999999999853 344678899999999886 4668999999999
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
|++|++.. .++..+.+|+.-|.++....++. .++|+|+|++++||+..
T Consensus 202 Ir~w~~~g----e~l~~~~ghtn~vYsis~~~~~~-------------~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 202 IRLWDLDG----EVLLEMHGHTNFVYSISMALSDG-------------LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEEeccC----ceeeeeeccceEEEEEEecCCCC-------------eEEEecCCceEEEeecC
Confidence 99999954 78999999999999999666666 79999999999999987
No 117
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=3.1e-26 Score=201.11 Aligned_cols=243 Identities=19% Similarity=0.301 Sum_probs=195.1
Q ss_pred ccceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 113 NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
..++.+|.|-.|.|.++.++ ++.+++++.|+.+++|++. +...++.+|++.|+++.|......+++|+.|.+|++|
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 45788888888999999886 7899999999999999865 6678999999999999998877779999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
|+....+..... ..+.+..|..+ ...+++|-.|++|++||.++..
T Consensus 289 Dl~k~~C~kt~l---------------------------------~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~ 333 (459)
T KOG0288|consen 289 DLQKAYCSKTVL---------------------------------PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD 333 (459)
T ss_pred hhhhhheecccc---------------------------------ccccccceEec--ceeeeecccccceEEEeccCCc
Confidence 998865544333 23344555554 4678889999999999999999
Q ss_pred eeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 269 ~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
+..+...+. .|+++..++++ .+++++.|.++.+.|++..+. .......-.......+.+.|+|++.|+++|+.||.
T Consensus 334 ~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI--~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs 410 (459)
T KOG0288|consen 334 KTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI--RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS 410 (459)
T ss_pred eeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE--EEEeeccccccccccceeEECCCCceeeeccCCCc
Confidence 999998776 89999999998 788889999999999985432 22221222222344899999999999999999999
Q ss_pred EEEEecCCcccccceeecCcc-eEEEEEec--CCEEEEEeCCCcEEEEe
Q 012007 348 VNFWECEKHLSHGGVLRGHKM-AVLCLAAA--GNLVFSGSADRNICLWR 393 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~s~~~dg~i~iwd 393 (473)
|+||++.+++........+.. .|++++|+ |..|++++.++.+.+|.
T Consensus 411 v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 411 VYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999887655433333333 58877765 89999999999999993
No 118
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.4e-25 Score=219.53 Aligned_cols=271 Identities=21% Similarity=0.279 Sum_probs=204.1
Q ss_pred CcccEEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 160 NSGLVKAIIISGDSNKIFTGH--QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
+...|.+|..+|||..++||+ .||.++||+.+.-..........+ .........|.+.
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l--------------------~k~l~~m~~h~~s 71 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENL--------------------PKHLCTMDDHDGS 71 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhccc--------------------chhheeeccccCc
Confidence 456799999999999999999 899999999754221100000000 0111222349999
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEEcCC------------------CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCC
Q 012007 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISD------------------CKCLESINAHDDAINSVVAGFDS-LVFTGSADG 298 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg~v~vwd~~~------------------~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg 298 (473)
|+|+.|++||.+||+|+.|+.|.||+... .+++..+.+|...|..++|+|++ ++++++.|+
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn 151 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN 151 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence 99999999999999999999999998762 24677888999999999999988 999999999
Q ss_pred cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc--------ceE
Q 012007 299 TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK--------MAV 370 (473)
Q Consensus 299 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~v 370 (473)
+|.+||.++ . .....+.+|.+.|..+.|.|-|+||++-+.|++|+||++.+.. ......++- ..-
T Consensus 152 sViiwn~~t-----F-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 152 SVIIWNAKT-----F-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred eEEEEcccc-----c-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccce-eeEeeccchhhCCCcceeee
Confidence 999999863 2 5678899999999999999999999999999999999976521 111221111 223
Q ss_pred EEEEecCCEEEEEeC----CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCC---CcccccCC-CccEEEEEee
Q 012007 371 LCLAAAGNLVFSGSA----DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDH---DHEYHQKG-DQRWTVYSGS 442 (473)
Q Consensus 371 ~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~---~~~~~~~~-~~~~~l~s~s 442 (473)
.+++|||.+|++... -.++.|.+..+ +..-..+.||..++.++.|+|.--. ..+..... ....++|+||
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~t---Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGT---WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCC---ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 678899999998743 34688888866 8888899999999999999984210 00000001 1123799999
Q ss_pred CCCcEEEEEcCCCCCCcc
Q 012007 443 LDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 443 ~Dg~v~iW~i~~~~~~~~ 460 (473)
.|++|.||......|.+.
T Consensus 302 qDrSlSVW~T~~~RPl~v 319 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFV 319 (942)
T ss_pred CCccEEEEecCCCCchhh
Confidence 999999999976655443
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.3e-25 Score=198.69 Aligned_cols=249 Identities=26% Similarity=0.449 Sum_probs=201.5
Q ss_pred CCEEEEeeC-CCcEEEeeCCcccccc--ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 133 GDLLYTGSD-SKNIRVWKNLKEFSGF--KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 133 g~~l~tg~~-dg~i~vwd~~~~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
+.+++++.. -..|.+|...++.... .--.++|.|++-+|+|.+|+.|+..|.|++|.+.++.......
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~--------- 120 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS--------- 120 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH---------
Confidence 456666643 4578999877554332 3356889999999999999999899999999999998655442
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC---------CCeeeEEeecCCCce
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS---------DCKCLESINAHDDAI 280 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~---------~~~~~~~~~~~~~~v 280 (473)
+|...|+|+.|+.|+.+|++|+.||.|.+|++. +-++++.+..|.-+|
T Consensus 121 -----------------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsI 177 (476)
T KOG0646|consen 121 -----------------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSI 177 (476)
T ss_pred -----------------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCccee
Confidence 499999999999999999999999999999873 346788899999999
Q ss_pred eEEEEcCCC---EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc
Q 012007 281 NSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357 (473)
Q Consensus 281 ~~l~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 357 (473)
+++...+.+ .+++++.|.++++||+..+. + .........+.+++++|.++.+++|+.+|.|.+.++.+..
T Consensus 178 TDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~------L-Llti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 178 TDLQIGSGGTNARLYTASEDRTIKLWDLSLGV------L-LLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS 250 (476)
T ss_pred EEEEecCCCccceEEEecCCceEEEEEeccce------e-eEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence 999988775 99999999999999997432 1 2222346789999999999999999999999998875321
Q ss_pred ---------------cccceeecCcc--eEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEE
Q 012007 358 ---------------SHGGVLRGHKM--AVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAV 418 (473)
Q Consensus 358 ---------------~~~~~~~~~~~--~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~ 418 (473)
.....+.||.. .|+|++ .||.+|++|+.||.|+|||+.+ .++++++....++|+.+.+
T Consensus 251 ~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S---~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 251 GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS---KQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred cccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch---HHHHHHHhhhccccceeEe
Confidence 11234567877 777765 6799999999999999999998 6788887767889999999
Q ss_pred ecCCC
Q 012007 419 EEDRD 423 (473)
Q Consensus 419 ~~~~~ 423 (473)
.|-.+
T Consensus 328 ~~~~~ 332 (476)
T KOG0646|consen 328 NPLER 332 (476)
T ss_pred ecccc
Confidence 77544
No 120
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.5e-25 Score=185.55 Aligned_cols=273 Identities=18% Similarity=0.278 Sum_probs=202.2
Q ss_pred eecccEEEEEec--CCEEEEeeCCCcEEEeeCCc------cccccccCcccEEEEEEeC--CCCEEEEEeCCCeEEEEeC
Q 012007 121 RKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIISG--DSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 121 ~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~------~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vwd~ 190 (473)
+|.+-|.++++| |+.+|||+.|++|+|||..+ .-...+.|.+.|..|.|.+ -|+.+|+|+.|+++.||.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 577778888876 99999999999999999543 3445788999999999954 4789999999999999986
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCCC-
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISDC- 267 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~~- 267 (473)
.......... .-.+...+......|+.+.|.| -|-.|++++.||+|+||+..+.
T Consensus 91 ~~~~~~~~~~-----------------------~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~ 147 (361)
T KOG2445|consen 91 QEKSEEAHGR-----------------------RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM 147 (361)
T ss_pred cccccccccc-----------------------eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc
Confidence 4222111000 0011122334678899999999 5779999999999999986543
Q ss_pred -----eeeEEee-------cCCCceeEEEEcCCC----EEEEEeCC-----CcEEEEeCcccCCCcceeeeeeeccCCcc
Q 012007 268 -----KCLESIN-------AHDDAINSVVAGFDS----LVFTGSAD-----GTVKVWRRELQGKGTKHCLAQVLLKHENA 326 (473)
Q Consensus 268 -----~~~~~~~-------~~~~~v~~l~~~~~~----~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
....+++ .+.....|+.|++.. +|+.|+.+ +.++||...... .+...+..+.+|..+
T Consensus 148 nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kva~L~d~~dp 225 (361)
T KOG2445|consen 148 NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKVAELPDHTDP 225 (361)
T ss_pred ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc--ceeeeehhcCCCCCc
Confidence 2333333 466778899998764 67777765 589999876433 355566778899999
Q ss_pred EEEEEEccCC----CEEEEeCCCCcEEEEecCCc-------------------ccccceeecCcceEEEEEec--CCEEE
Q 012007 327 VTALAVNQES----AVVYCGSSDGLVNFWECEKH-------------------LSHGGVLRGHKMAVLCLAAA--GNLVF 381 (473)
Q Consensus 327 v~~l~~~~~~----~~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~~~~~~v~~~~~~--~~~l~ 381 (473)
|++|+|.|+- .+||+++.|| |+||.++.. ......+.+|.+.|..+.++ |..|+
T Consensus 226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS 304 (361)
T ss_pred ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence 9999999953 6799999999 999998631 11223456899999888877 99999
Q ss_pred EEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 382 SGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 382 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
+.+.||.|++|...-...+.|+..+... +.++...|.+
T Consensus 305 StGdDG~VRLWkany~n~~kC~sv~~~e-~~~~~~~~~~ 342 (361)
T KOG2445|consen 305 STGDDGCVRLWKANYNNLWKCTSVLKAE-GSVTKPDFSQ 342 (361)
T ss_pred ecCCCceeeehhhhhhhhheeeeEEecc-CCCCCccccc
Confidence 9999999999998766667777777653 3344444443
No 121
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.1e-25 Score=190.76 Aligned_cols=266 Identities=20% Similarity=0.305 Sum_probs=192.1
Q ss_pred ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
.+..|++++.+.+|++||.++++|+.|..|+|.|++..-... ....-.+... . -...-...+..|.
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks-~~~em~~~~~-------q------a~hPvIRTlYDH~ 172 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS-KPKEMISGDT-------Q------ARHPVIRTLYDHV 172 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc-chhhhccCCc-------c------cCCceEeehhhcc
Confidence 356799999999999999999999999999999997321100 0000000000 0 0000112334699
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee--cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN--AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
+.|+++.|+|....|++|+.|++|+++|+......+.++ ....+|.++.|+|.| +|++|..-..+++||+++
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T----- 247 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT----- 247 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc-----
Confidence 999999999999999999999999999997543332222 245689999999998 888999999999999983
Q ss_pred ceeeee--eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE---EEecCCEEEEEeCCC
Q 012007 313 KHCLAQ--VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC---LAAAGNLVFSGSADR 387 (473)
Q Consensus 313 ~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~---~~~~~~~l~s~~~dg 387 (473)
.++.+. .-..|...|+++.+++.+++.++++.||.|++||--.......+-..|.+.-.| |.-+++|+++.+.|.
T Consensus 248 ~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 248 YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence 333332 345789999999999999999999999999999987777766667777765433 345799999999999
Q ss_pred cEEEEecCCCCceeEEEEecCC--CC---ceeEEEEecCCCCCcccccCCCccEEEEEee-CCCcEEEEEcCCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGH--TG---PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVSEHA 456 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h--~~---~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~~~ 456 (473)
.+++|.+.+ ..++..+.|- ++ --+...|+.... +++.-. ..+.+.-||-.+..
T Consensus 328 ~vkLWEi~t---~R~l~~YtGAg~tgrq~~rtqAvFNhtEd-------------yVl~pDEas~slcsWdaRtad 386 (430)
T KOG0640|consen 328 TVKLWEIST---GRMLKEYTGAGTTGRQKHRTQAVFNHTED-------------YVLFPDEASNSLCSWDARTAD 386 (430)
T ss_pred eeeeeeecC---CceEEEEecCCcccchhhhhhhhhcCccc-------------eEEccccccCceeeccccchh
Confidence 999999998 5677776653 11 123444555444 333332 34567777776554
No 122
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=193.18 Aligned_cols=306 Identities=22% Similarity=0.318 Sum_probs=217.5
Q ss_pred EEEecCCEEEEeeCCC-----cEEEeeCCccccccccCc----ccEEEEEEeC-------CCCEEEEEeCCCeEEEEeCC
Q 012007 128 SLAASGDLLYTGSDSK-----NIRVWKNLKEFSGFKSNS----GLVKAIIISG-------DSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg-----~i~vwd~~~~~~~~~~h~----~~V~~l~~s~-------~~~~l~s~~~dg~i~vwd~~ 191 (473)
-+.++..+|++|-.+. .|+||+-.. -.-+-.|. ..-.|++|.. -|+|+|.|..|..|.|||+.
T Consensus 132 ~V~psDnlIl~ar~eddvs~LEvYVyn~~e-~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLD 210 (463)
T KOG0270|consen 132 QVKPSDNLILCARNEDDVSYLEVYVYNEEE-ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLD 210 (463)
T ss_pred eeccCCcEEEEeeccCCceEEEEEEEcCCC-cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccc
Confidence 3556667777664432 344444332 11222232 3346777733 36899999999999999987
Q ss_pred CCCeee-EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCee
Q 012007 192 RKNASV-HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 192 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
-..... ...++.... ........+.....+|+++|..|.|+.. .+.|++|+.|.+|++||+.++++
T Consensus 211 I~d~v~P~~~LGs~~s------------k~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p 278 (463)
T KOG0270|consen 211 IVDAVLPCVTLGSKAS------------KKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP 278 (463)
T ss_pred cccccccceeechhhh------------hhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc
Confidence 443221 111111000 0000001112223369999999999874 56899999999999999999999
Q ss_pred eEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCC
Q 012007 270 LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDG 346 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg 346 (473)
..++..|.+.|.++.|++.. .|++|+.|++|.+.|.|.... ....-...+.|..++|.|.. ..++++..||
T Consensus 279 ~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~------s~~~wk~~g~VEkv~w~~~se~~f~~~tddG 352 (463)
T KOG0270|consen 279 KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN------SGKEWKFDGEVEKVAWDPHSENSFFVSTDDG 352 (463)
T ss_pred ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc------cCceEEeccceEEEEecCCCceeEEEecCCc
Confidence 99999999999999999886 899999999999999984221 11122235789999999955 5678889999
Q ss_pred cEEEEecCCcccccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+|+-+|++....+...+..|...|.+++.+ ..+|++++.|+.|++|++..... ..+....-.-+...|.++.|+..
T Consensus 353 ~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a 431 (463)
T KOG0270|consen 353 TVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVA 431 (463)
T ss_pred eEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCCCcc
Confidence 999999999878888999999999999876 67999999999999999986322 22222112233467778888766
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCCc
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSP 465 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~~ 465 (473)
. .++.||..+.++|||+....+..+.+..+
T Consensus 432 ~------------~la~GG~k~~~~vwd~~~~~~V~kaF~~~ 461 (463)
T KOG0270|consen 432 F------------TLAFGGEKAVLRVWDIFTNSPVRKAFGSR 461 (463)
T ss_pred e------------EEEecCccceEEEeecccChhHHHhhccc
Confidence 3 78999999999999999887776665543
No 123
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=6.8e-24 Score=180.03 Aligned_cols=244 Identities=17% Similarity=0.255 Sum_probs=184.2
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
....|..|.|+|.++.|+.++.||.+++||+......... .|..++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~---------------------------------~~~~plL 58 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF---------------------------------KHGAPLL 58 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe---------------------------------ecCCcee
Confidence 4578999999999999999999999999999877543333 3999999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CEEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
+++|.+ ...+++|+.||.|+.+|+.++... .+..|..+|.||...+. +.+++|+.|++|++||.+... ...
T Consensus 59 ~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~------~~~ 130 (323)
T KOG1036|consen 59 DCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV------VVG 130 (323)
T ss_pred eeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc------ccc
Confidence 999987 467899999999999999887654 45679999999998865 599999999999999998311 111
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee-ecCcceE--EEEEecCCEEEEEeCCCcEEEEecC
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL-RGHKMAV--LCLAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
.......|.++... ++.|++|+.|..|.+||+++.....+.. ..-+..+ .++-|++.-+++++-||.|.+=.++
T Consensus 131 -~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 131 -TFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred -ccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence 12233477777765 6789999999999999999754443111 1122233 3444677888999999998876665
Q ss_pred CC-CceeEEEEecCCC---------CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 396 ES-GAHSCLAVLTGHT---------GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 396 ~~-~~~~~~~~~~~h~---------~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
.. .....-..++.|. -+|++|+|+|-.. .|+|||.||.|.+||+...+...+
T Consensus 208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-------------tfaTgGsDG~V~~Wd~~~rKrl~q 269 (323)
T KOG1036|consen 208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-------------TFATGGSDGIVNIWDLFNRKRLKQ 269 (323)
T ss_pred CchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-------------eEEecCCCceEEEccCcchhhhhh
Confidence 53 1112233444452 2799999999876 799999999999999998765544
No 124
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=7.2e-25 Score=189.49 Aligned_cols=242 Identities=17% Similarity=0.249 Sum_probs=194.3
Q ss_pred cceeeeeeecccEEEEEecCCEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 114 GLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
..+.++..|.|.|..+..+...++++++|.+|+.|.... .+.++. ....+..|.-+..++.++|||.+ |.|||...
T Consensus 100 ~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~til-g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R 176 (433)
T KOG0268|consen 100 ECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTIL-GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQR 176 (433)
T ss_pred hhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeee-ccccccccccccccccccccCce--eeeccccc
Confidence 457889999999999999999999999999999998553 333333 34557777777777889999875 99999987
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
......... ..+.|.++.|+|. -..|++|+.|+.|.+||++++.+++
T Consensus 177 ~~Pv~smsw--------------------------------G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~ 224 (433)
T KOG0268|consen 177 DNPVSSMSW--------------------------------GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK 224 (433)
T ss_pred CCccceeec--------------------------------CCCceeEEecCCCcchheeeeccCCceEEEecccCCccc
Confidence 766555443 4567899999994 4577888899999999999999888
Q ss_pred EeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
.+. -...-+.|+|+|+. .+++++.|..+..||++ .-..+.....+|.++|.++.|+|.|+-+++|+.|.+|+|
T Consensus 225 KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR-----~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 225 KVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMR-----NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRI 298 (433)
T ss_pred eee-eeccccceecCccccceeeccccccceehhhh-----hhcccchhhcccceeEEEeccCCCcchhccccccceEEE
Confidence 765 34456889999976 67889999999999998 445567788899999999999999999999999999999
Q ss_pred EecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCC
Q 012007 351 WECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
|..+.+.............|.|+ +.|.+|+++|+.|+.|++|....
T Consensus 299 f~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 299 FPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 99876543322222223455555 55799999999999999998764
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.3e-25 Score=208.22 Aligned_cols=229 Identities=17% Similarity=0.241 Sum_probs=187.6
Q ss_pred ecCCEEEEeeCCCcEEEeeCCc-----cccccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccc
Q 012007 131 ASGDLLYTGSDSKNIRVWKNLK-----EFSGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSL 204 (473)
Q Consensus 131 ~~g~~l~tg~~dg~i~vwd~~~-----~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 204 (473)
.+.++|||++..|.|.+||+.+ .+..|..|+..|+++.|++-. ++|++|+.||.|++||+...+......
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~---- 173 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR---- 173 (839)
T ss_pred chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc----
Confidence 4577999999999999999765 355788999999999998754 689999999999999998776443333
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCC-eeeEEeecCCCceeE
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINS 282 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~v~~ 282 (473)
+..+.|..++|+| .+.+|+++...|.+++||++.. ++...+.+|.++|.|
T Consensus 174 ----------------------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 174 ----------------------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred ----------------------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 3567899999999 6789999999999999999864 567788899999999
Q ss_pred EEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE-EEEeC--CCCcEEEEecCCccc
Q 012007 283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV-VYCGS--SDGLVNFWECEKHLS 358 (473)
Q Consensus 283 l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~--~dg~i~iwd~~~~~~ 358 (473)
+.|+|++ +|++|+.|+.|+|||........ ........+|.+++|-|+..+ |++++ .|-.|+|||++....
T Consensus 226 ~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~-----~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI 300 (839)
T KOG0269|consen 226 LNWHPNREWLATGGRDKMVKIWDMTDSRAKP-----KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI 300 (839)
T ss_pred EeecCCCceeeecCCCccEEEEeccCCCccc-----eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc
Confidence 9999987 99999999999999987433211 222233568999999997755 55544 367899999999999
Q ss_pred ccceeecCcceEEEEEecC---CEEEEEeCCCcEEEEecCC
Q 012007 359 HGGVLRGHKMAVLCLAAAG---NLVFSGSADRNICLWRREE 396 (473)
Q Consensus 359 ~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~ 396 (473)
+...+..|...+..+.|++ ..|.+++.||+|..-.+++
T Consensus 301 P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 301 PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred cceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 9999999999999998874 5788999999887655544
No 126
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.4e-23 Score=199.10 Aligned_cols=255 Identities=16% Similarity=0.217 Sum_probs=197.2
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCc---cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccc
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLK---EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSL 204 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~---~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 204 (473)
|+.++|++|++++.||.|++|+... .-..+.-+...|.+++.. +++|++|+.+++|.+|.+..++......
T Consensus 20 ~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~---- 93 (933)
T KOG1274|consen 20 CYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILA---- 93 (933)
T ss_pred EEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceee----
Confidence 5566799999999999999997542 222333377888888874 4499999999999999998876432111
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEE
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~ 284 (473)
..+-++.+++|+.+|++++.|+.|-.|++.++.+......+++|+++|.++.
T Consensus 94 ----------------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 94 ----------------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLS 145 (933)
T ss_pred ----------------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeee
Confidence 2566889999999999999999999999999999999999999999999999
Q ss_pred EcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeee-ec-cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc
Q 012007 285 AGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQV-LL-KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG 361 (473)
Q Consensus 285 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 361 (473)
++|.+ +|++.+.||.|++||+..+........+.. .. .....+..++|+|++..++....|+.|++|+.........
T Consensus 146 ~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK 225 (933)
T ss_pred EcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee
Confidence 99998 899999999999999975432111111111 11 1145577899999988888999999999999887544332
Q ss_pred eeecCc---ceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 362 VLRGHK---MAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 362 ~~~~~~---~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
....+. ..++.|+|+|.|||+++.||.|.|||.++. .. ......|.+++|.|+..
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~---~~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH---ER----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc---hh----ccccceeEEEecCCCCC
Confidence 222222 345677888999999999999999999871 11 22346799999999987
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=186.69 Aligned_cols=280 Identities=13% Similarity=0.211 Sum_probs=212.5
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCe
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~ 195 (473)
.+.|.++.|. ..+|++|+.||+++||.+. ..+..+.--..+|.+.+|.|+|. .+++++.-..++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4567787766 6699999999999999754 33455555678999999999998 899999999999999998876
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA 275 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 275 (473)
......... ....+.....++++++|+..+..|.|.+....+++.+..++
T Consensus 293 ~k~~~~~g~-----------------------------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K- 342 (514)
T KOG2055|consen 293 TKLKPPYGV-----------------------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK- 342 (514)
T ss_pred ccccCCCCc-----------------------------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-
Confidence 554443321 12356678889999999999999999999999999999887
Q ss_pred CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 276 HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 276 ~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
-.+.|..++|+.++ .|++++.+|.|.+||++. ..++........-.-++++.++++.+||+|+..|.|.|||.+
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~-----~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ-----NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCC-----cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 46789999999887 788888999999999983 333333333333334778888999999999999999999976
Q ss_pred Cc-----ccccceeecCcceEEE--EEecCCEEEEEeC--CCcEEEEecCCCCceeEEEEec---CCCCceeEEEEecCC
Q 012007 355 KH-----LSHGGVLRGHKMAVLC--LAAAGNLVFSGSA--DRNICLWRREESGAHSCLAVLT---GHTGPVKCLAVEEDR 422 (473)
Q Consensus 355 ~~-----~~~~~~~~~~~~~v~~--~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~---~h~~~V~~l~~~~~~ 422 (473)
+. ..+...+..-...|.. |+++.++||.++. +..+++-.+.+ ......+. ..-+.|+|++|+|.+
T Consensus 418 s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS---~TVFsNfP~~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 418 SCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS---CTVFSNFPTSNTKVGHVTCMAFSPNS 494 (514)
T ss_pred hhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc---eeeeccCCCCCCcccceEEEEecCCC
Confidence 42 2222222233344544 4556888888874 56788887776 23333332 234568999999998
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
. +||.|..+|.|.+|++.
T Consensus 495 G-------------~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 495 G-------------YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred c-------------eEEeecCCCceeeEeec
Confidence 8 89999999999999974
No 128
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.7e-23 Score=165.48 Aligned_cols=256 Identities=18% Similarity=0.252 Sum_probs=186.2
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
.+..|.+++|+|.|.+.+.|+..++++|-....-......... + ..+... .......|.+.|.
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea--~---------~~pp~v------~~kr~khhkgsiy 93 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEA--A---------KQPPSV------LCKRNKHHKGSIY 93 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCccccccc--c---------cCCCeE------EeeeccccCccEE
Confidence 5678999999999999999999999988654321111000000 0 000000 0011124889999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCee-----eEEeecCCCceeEEEEcCC----C-EEEEEe-CCCcEEEEeCccc
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKC-----LESINAHDDAINSVVAGFD----S-LVFTGS-ADGTVKVWRRELQ 308 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~-----~~~~~~~~~~v~~l~~~~~----~-~l~s~~-~dg~i~vwd~~~~ 308 (473)
|.+|+|+|.++++|+.|.+|++...+...+ -.++..|.+.|..++|..+ + .|++++ .|..|.+-|...
T Consensus 94 c~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~- 172 (350)
T KOG0641|consen 94 CTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR- 172 (350)
T ss_pred EEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC-
Confidence 999999999999999999999987754332 2467789999999999654 2 455443 355666666542
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc---eeec-----CcceEEEEEecCCEE
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG---VLRG-----HKMAVLCLAAAGNLV 380 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~-----~~~~v~~~~~~~~~l 380 (473)
......+.+|.+-|.++ ++-++-++++|+.|.+|++||++-...... .+.+ ......++.|.|++|
T Consensus 173 -----g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 173 -----GQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred -----CCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence 22356778899988877 333678999999999999999975332211 1111 122335566779999
Q ss_pred EEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 381 FSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 381 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
++|-.|....+||++. ...++.+..|...|.|+.|+|... ++++|+.|..|++-|++..
T Consensus 247 ~sg~~dssc~lydirg---~r~iq~f~phsadir~vrfsp~a~-------------yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRG---GRMIQRFHPHSADIRCVRFSPGAH-------------YLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred eeccCCCceEEEEeeC---CceeeeeCCCccceeEEEeCCCce-------------EEEEecccceEEEeecccc
Confidence 9999999999999998 688999999999999999999877 9999999999999998753
No 129
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.9e-23 Score=175.12 Aligned_cols=273 Identities=17% Similarity=0.248 Sum_probs=199.7
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecc
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 203 (473)
...|+..|.+||+|+.||.|.|||.. ..-..+.+|..+|.+++|++||+.|+|++.|..|.+||+..+......+
T Consensus 28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir--- 104 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR--- 104 (405)
T ss_pred eEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE---
Confidence 33455569999999999999999965 5566788999999999999999999999999999999999988665554
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCC---
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLESIN-AHDD--- 278 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~--- 278 (473)
..++|+...|+|. .+.+++.-.+..-.+.++..++. ..+. ...+
T Consensus 105 ------------------------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln 153 (405)
T KOG1273|consen 105 ------------------------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLN 153 (405)
T ss_pred ------------------------------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccc
Confidence 6678999999994 34444444555566666654221 1111 1111
Q ss_pred -ceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccC-CccEEEEEEccCCCEEEEeCCCCcEEEEecCC
Q 012007 279 -AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH-ENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 279 -~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
.-.+..|.+.| ++++|...|.+.++|..+.+ .+..+.-. ...|..+.++..|++|+.-+.|..|+.|+++.
T Consensus 154 ~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e------~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 154 SSASHGVFDRRGKYIITGTSKGKLLVYDAETLE------CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred cccccccccCCCCEEEEecCcceEEEEecchhe------eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 11222455655 99999999999999987432 22222222 36789999999999999999999999999863
Q ss_pred cccc---cce---------eecCcceEEEEEecCCEEEEEeC-CCcEEEEecCCCCceeEEEEecCCC-CceeEEEEecC
Q 012007 356 HLSH---GGV---------LRGHKMAVLCLAAAGNLVFSGSA-DRNICLWRREESGAHSCLAVLTGHT-GPVKCLAVEED 421 (473)
Q Consensus 356 ~~~~---~~~---------~~~~~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~~~~ 421 (473)
-... ... ...-.-...|++-+|.|+++|+. ...++||.... +.+++.+.|.. .....+.|+|-
T Consensus 228 i~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~---GsLVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 228 IDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI---GSLVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred hcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC---cceeeeecCCchhheeecccccc
Confidence 1111 001 11111234677888999988874 35799999887 68889998887 57889999999
Q ss_pred CCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 422 RDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.. .+++- ..|.|+||.....
T Consensus 305 rp-------------~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 305 RP-------------IIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ee-------------eeeec-cCCceEEEEeecc
Confidence 87 67777 6789999998654
No 130
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=2.7e-22 Score=186.23 Aligned_cols=266 Identities=13% Similarity=0.113 Sum_probs=185.3
Q ss_pred CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEE-EEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKI-FTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
++++++++.|+.|++||.. +.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++......
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------- 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--------- 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---------
Confidence 4578899999999999964 4445555443 46789999999877 566788999999998775432211
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~ 288 (473)
....+..++|+|+++.++++ +.|+.|++||+.+.+.+..+.. ...+.++.++|+
T Consensus 71 ------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~d 125 (300)
T TIGR03866 71 ------------------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPD 125 (300)
T ss_pred ------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCC
Confidence 11234578899999977665 5689999999999888877763 334678999999
Q ss_pred C-EEEEEeCCC-cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCccccccee-e
Q 012007 289 S-LVFTGSADG-TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVL-R 364 (473)
Q Consensus 289 ~-~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-~ 364 (473)
+ .++++..++ .+.+||.+... . .... .....+..++|+|++++|+++ ..++.|++||+++........ .
T Consensus 126 g~~l~~~~~~~~~~~~~d~~~~~-----~-~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~ 198 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTKTYE-----I-VDNV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE 198 (300)
T ss_pred CCEEEEEecCCCeEEEEeCCCCe-----E-EEEE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence 8 666666654 46777875321 1 1111 122345789999999988654 468999999998764432211 1
Q ss_pred c---C----cceEEEEEecCCEEEE-EeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccE
Q 012007 365 G---H----KMAVLCLAAAGNLVFS-GSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRW 436 (473)
Q Consensus 365 ~---~----~~~v~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~ 436 (473)
. + ...-.+++++++++++ .+.++.|.+||+.+. +.+..+. +...+.+++|+|+++
T Consensus 199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~------------- 261 (300)
T TIGR03866 199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVWQLAFTPDEK------------- 261 (300)
T ss_pred ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcceEEECCCCC-------------
Confidence 0 1 0112456788887554 455678999999873 3343332 345789999999998
Q ss_pred EEEEe-eCCCcEEEEEcCCCCC
Q 012007 437 TVYSG-SLDKSVKVWRVSEHAP 457 (473)
Q Consensus 437 ~l~s~-s~Dg~v~iW~i~~~~~ 457 (473)
.|+++ +.+|.|++||+..++.
T Consensus 262 ~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 262 YLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCcE
Confidence 66665 5799999999998764
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.9e-25 Score=208.96 Aligned_cols=244 Identities=25% Similarity=0.425 Sum_probs=208.0
Q ss_pred CEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEee
Q 012007 134 DLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKS 213 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 213 (473)
.+++.+..+-.+++||..+ +..|...|.++..-..++.+++|+.|..+-+|.+........
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S--------------- 65 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE----FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS--------------- 65 (825)
T ss_pred cccceeeeeeccccccchh----hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe---------------
Confidence 3455555666778888653 456888899998877788999999999999999876654332
Q ss_pred cCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEE
Q 012007 214 SVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292 (473)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~ 292 (473)
+.+|..+|.|+.|+++..+|++|+.+|+|++||++.++.++++.+|...+..+.|+|-+ +++
T Consensus 66 -----------------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a 128 (825)
T KOG0267|consen 66 -----------------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFA 128 (825)
T ss_pred -----------------eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEec
Confidence 22599999999999999999999999999999999999999999999999999999998 778
Q ss_pred EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE
Q 012007 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 293 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
.|+.|+.+++||.+..+ ....+.+|...|..+.|+|+|++++.++.|..++|||+..+. ....+..|...+..
T Consensus 129 ~gStdtd~~iwD~Rk~G------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~ef~~~e~~v~s 201 (825)
T KOG0267|consen 129 SGSTDTDLKIWDIRKKG------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-LSKEFKSHEGKVQS 201 (825)
T ss_pred cccccccceehhhhccC------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc-cccccccccccccc
Confidence 99999999999997322 356677799999999999999999999999999999998754 34567788888877
Q ss_pred EEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 373 LAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 373 ~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+.++ .-++++|+.|++|++||+++ .+.+.........|.+++|+|++.
T Consensus 202 le~hp~e~Lla~Gs~d~tv~f~dlet---fe~I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 202 LEFHPLEVLLAPGSSDRTVRFWDLET---FEVISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred cccCchhhhhccCCCCceeeeeccce---eEEeeccCCccCCceeeeecCCce
Confidence 6654 66899999999999999998 778888877788999999999998
No 132
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=5.2e-23 Score=192.42 Aligned_cols=294 Identities=14% Similarity=0.186 Sum_probs=218.8
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCCcc--ccc--------------------cccCc----ccEEEEEEeCCCCEEEEEe
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNLKE--FSG--------------------FKSNS----GLVKAIIISGDSNKIFTGH 180 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~~~--~~~--------------------~~~h~----~~V~~l~~s~~~~~l~s~~ 180 (473)
.|++.+.++|++|+.+|.|++|+.... +.+ +.+-. -...++.|++...+|....
T Consensus 264 nCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVY 343 (1080)
T KOG1408|consen 264 NCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVY 343 (1080)
T ss_pred ceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEE
Confidence 477778999999999999999973211 000 00000 1245678898889999999
Q ss_pred CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-----------CCE
Q 012007 181 QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-----------QGL 249 (473)
Q Consensus 181 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----------~~~ 249 (473)
.|..++|||+..-+..-. ....+.|...|+.+.--|- ..-
T Consensus 344 ndhSlYvWDvrD~~kvgk-----------------------------~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~c 394 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGK-----------------------------CSSMLYHSACIWDVENLPCNVHSPTAACLPRGC 394 (1080)
T ss_pred cCceEEEEeccccccccc-----------------------------eeeeeeccceeeeeccccccccCcccccCCccc
Confidence 999999999987543211 1112236666666554331 135
Q ss_pred EEEEeCCCCEEEEEcCCCe---eeEE----------------------------------eecCCCceeEEEEcCCC-EE
Q 012007 250 LYSGSWDKTLKVWRISDCK---CLES----------------------------------INAHDDAINSVVAGFDS-LV 291 (473)
Q Consensus 250 l~s~s~dg~v~vwd~~~~~---~~~~----------------------------------~~~~~~~v~~l~~~~~~-~l 291 (473)
+++++.|++|++||+..+. ..+. .-.....+.+++++|++ +|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 8999999999999996521 1000 00123468999999998 89
Q ss_pred EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc---CCCEEEEeCCCCcEEEEecCCcccccceeecCcc
Q 012007 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ---ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM 368 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (473)
++|...|.|+||++. .......+..|+..|.|+.|+. ..++|++++.|..|++||......+.+.+.+|..
T Consensus 475 AsGDr~GnlrVy~Lq------~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSs 548 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQ------ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSS 548 (1080)
T ss_pred cccCccCceEEEEeh------hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccc
Confidence 999999999999995 3344567889999999999986 3478999999999999999877777777777777
Q ss_pred eEEEEEe---------------------------------------------------cCCEEEEEeCCCcEEEEecCCC
Q 012007 369 AVLCLAA---------------------------------------------------AGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 369 ~v~~~~~---------------------------------------------------~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
.|+++.+ ..+++++++.|..|+||++.++
T Consensus 549 sITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg 628 (1080)
T KOG1408|consen 549 SITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG 628 (1080)
T ss_pred ceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc
Confidence 6665443 2368999999999999999996
Q ss_pred CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCCcccc
Q 012007 398 GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSPTQM 468 (473)
Q Consensus 398 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~~~~~ 468 (473)
+..+.++--.+|.+....+...|.+- +|++.+.|+++.++|+.+++.......+...+
T Consensus 629 Kq~k~FKgs~~~eG~lIKv~lDPSgi-------------Y~atScsdktl~~~Df~sgEcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 629 KQVKSFKGSRDHEGDLIKVILDPSGI-------------YLATSCSDKTLCFVDFVSGECVAQMTGHSEAV 686 (1080)
T ss_pred ceeeeecccccCCCceEEEEECCCcc-------------EEEEeecCCceEEEEeccchhhhhhcCcchhe
Confidence 55555555556878888899999998 99999999999999999998877766555443
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=6.7e-22 Score=178.18 Aligned_cols=291 Identities=15% Similarity=0.261 Sum_probs=220.9
Q ss_pred eecccEEEEEec----CCEEEEe--eCCCcEEEeeCCcc--ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 121 RKEGHIYSLAAS----GDLLYTG--SDSKNIRVWKNLKE--FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 121 ~h~~~V~~~~~~----g~~l~tg--~~dg~i~vwd~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
..+..|.|++|+ |.+|+.- +.+..+.|||..+. ....+.-++.|....|+|.+.-|+.....|.+..|+.+.
T Consensus 152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~ 231 (626)
T KOG2106|consen 152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG 231 (626)
T ss_pred cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence 346678888875 5555554 44668889997644 344555678899999999775555555567999999988
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 272 (473)
+.......+... .....|.|++|.++|+ +++|..+|.|.||+..+.+..+.
T Consensus 232 ~~l~k~~~~fek----------------------------~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~ 282 (626)
T KOG2106|consen 232 GSLVKRQGIFEK----------------------------REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQ 282 (626)
T ss_pred CceEEEeecccc----------------------------ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeE
Confidence 765544332211 1336799999999886 78999999999999988888887
Q ss_pred eecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCc----------------------------------ceeeee
Q 012007 273 INAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGT----------------------------------KHCLAQ 318 (473)
Q Consensus 273 ~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----------------------------------~~~~~~ 318 (473)
..+|.+.|.+++...+|.|++|+.|..|..||-....... ......
T Consensus 283 ~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 283 VHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred eeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence 7799999999999999999999999999999833111100 000113
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCC
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
...+|......++.+|+...+++++.|+.+++|+ .. +..-............+.|.| .++.|...|...+.|.++
T Consensus 363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~-k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-- 437 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DH-KLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTET-- 437 (626)
T ss_pred EEEecccceeeEEcCCChhheeeccCcceEEEcc-CC-ceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccc--
Confidence 3556788889999999999999999999999999 22 222233334445556666778 999999999999999988
Q ss_pred ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 399 AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 399 ~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
...+..... +.++++++|+|++. +||.|+.|+.|+||.+........
T Consensus 438 -~~lv~~~~d-~~~ls~v~ysp~G~-------------~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 438 -QDLVTIHTD-NEQLSVVRYSPDGA-------------FLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred -ceeEEEEec-CCceEEEEEcCCCC-------------EEEEecCCCeEEEEEECCCCcEEE
Confidence 445555445 88999999999999 999999999999999998765544
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=5e-23 Score=179.06 Aligned_cols=262 Identities=18% Similarity=0.275 Sum_probs=194.2
Q ss_pred eeeeecccEEEEEec----CCEEEEeeCCCcEEEeeCC------------------ccccccccCcccEEEEEEeCCC-C
Q 012007 118 SIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNL------------------KEFSGFKSNSGLVKAIIISGDS-N 174 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~----g~~l~tg~~dg~i~vwd~~------------------~~~~~~~~h~~~V~~l~~s~~~-~ 174 (473)
...+|.+.|..+... ..+.|+-+..|.|+||++. +++.++.+|.+.=++|+|||-. .
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 344567766665533 4478888999999999853 2355677899889999999932 2
Q ss_pred EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEE
Q 012007 175 KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSG 253 (473)
Q Consensus 175 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~ 253 (473)
.|++|..-+.|++|...++.-.... .-+.+|+..|..|+|+| ....|++|
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~-----------------------------~Pf~gH~~SVEDLqWSptE~~vfaSc 276 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQ-----------------------------RPFTGHTKSVEDLQWSPTEDGVFASC 276 (440)
T ss_pred ccccCccccceEeeeeccCceeecC-----------------------------ccccccccchhhhccCCccCceEEee
Confidence 5888888889999998886532211 11225999999999999 45689999
Q ss_pred eCCCCEEEEEcCCC---eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEE
Q 012007 254 SWDKTLKVWRISDC---KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 254 s~dg~v~vwd~~~~---~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (473)
+.||+|+|||++.+ .++. .++|...|+.|.|+... +|++|+.||+++|||++.... ..++..+..|..+|++
T Consensus 277 S~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~---~~pVA~fk~Hk~pIts 352 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS---GQPVATFKYHKAPITS 352 (440)
T ss_pred ecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC---CCcceeEEeccCCeeE
Confidence 99999999999987 3333 38899999999998775 899999999999999986543 2567788999999999
Q ss_pred EEEccC-CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 330 LAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 330 l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
|.|+|. ...|++++.|..|.|||+.-.......-. -+ .+. +-|+. .+++....+
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~---------------~a----~~~--L~dlP----pQLLFVHqG 407 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ---------------EA----AEG--LQDLP----PQLLFVHQG 407 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeeccCChhhhcc---------------cc----ccc--hhcCC----ceeEEEecc
Confidence 999994 57888999999999999864322110000 00 011 11332 355655544
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+..|..+.|+++-.. +|++.+.|| +.||.
T Consensus 408 -Qke~KevhWH~QiPG------------~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 408 -QKEVKEVHWHRQIPG------------LLVSTAIDG-FNVFK 436 (440)
T ss_pred -hhHhhhheeccCCCC------------eEEEecccc-eeEEE
Confidence 456899999998775 899999998 55554
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.3e-23 Score=188.92 Aligned_cols=253 Identities=17% Similarity=0.309 Sum_probs=200.5
Q ss_pred ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 158 KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 158 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
..|.+-|.++.++...++++||+. |-|+|||+...... ..+..++. ......
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k--~PvsqLdc-------------------------l~rdny 467 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK--SPVSQLDC-------------------------LNRDNY 467 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC--Cccccccc-------------------------cCcccc
Confidence 358888999999999999999886 46999999765211 11111110 014567
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee--EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcce
Q 012007 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL--ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH 314 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~ 314 (473)
|.++.+.|||+.|++|++-.+|.|||+....+. .++....-...+++.+||. ..++++.||.|.|||+. .+
T Consensus 468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh------nq 541 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH------NQ 541 (705)
T ss_pred eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc------cc
Confidence 889999999999999999999999999765443 3333333456778889997 88899999999999996 45
Q ss_pred eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEE
Q 012007 315 CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLW 392 (473)
Q Consensus 315 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iw 392 (473)
.++..+.+|...+.||.++++|..|.+|+-|.+|+.||++.+.++...- ....|.++ +|.+.+|+.|-+++.+.|.
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dWlavGMens~vevl 619 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDWLAVGMENSNVEVL 619 (705)
T ss_pred eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCccceeeecccCcEEEE
Confidence 5788999999999999999999999999999999999999876654322 23445444 5779999999999999988
Q ss_pred ecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCC
Q 012007 393 RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLH 463 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~ 463 (473)
.... .....+.-|..-|.++.|.+.++ ++++.|.|.-+..|...-+...++..+
T Consensus 620 h~sk----p~kyqlhlheScVLSlKFa~cGk-------------wfvStGkDnlLnawrtPyGasiFqskE 673 (705)
T KOG0639|consen 620 HTSK----PEKYQLHLHESCVLSLKFAYCGK-------------WFVSTGKDNLLNAWRTPYGASIFQSKE 673 (705)
T ss_pred ecCC----ccceeecccccEEEEEEecccCc-------------eeeecCchhhhhhccCccccceeeccc
Confidence 8776 23445667899999999999999 899999999999999988877666544
No 136
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.3e-22 Score=189.23 Aligned_cols=301 Identities=20% Similarity=0.261 Sum_probs=219.2
Q ss_pred EEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCCCC---EEEEEeCCCeEEEEeCCCCCeee----EEeecc
Q 012007 135 LLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGDSN---KIFTGHQDGKIRIWKVSRKNASV----HKRVGS 203 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~~~---~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~ 203 (473)
++|.|+.+..|.++... ..+..+.+|...|.+|+|...+. +|+++++|..||||.+.-..... ......
T Consensus 161 lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~ 240 (764)
T KOG1063|consen 161 LLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTT 240 (764)
T ss_pred EEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccc
Confidence 57777888888888544 56778999999999999976543 89999999999999986443211 000000
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC--ee-----eEEeecC
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC--KC-----LESINAH 276 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~--~~-----~~~~~~~ 276 (473)
.+. ...... ...+.+.-....+..||.+.|.++.|+|.+..|++++.|.++.+|...+. -- +..+.+.
T Consensus 241 ~~~--~~~f~~---l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~ 315 (764)
T KOG1063|consen 241 LSN--LPVFMI---LEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGS 315 (764)
T ss_pred ccC--Cceeee---eeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccc
Confidence 000 000000 01112333334566799999999999999999999999999999987543 21 2222334
Q ss_pred CCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC-
Q 012007 277 DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE- 354 (473)
Q Consensus 277 ~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~- 354 (473)
........|++++ .+++-+..|..++|... ............+|...|+.++|+|.|.+|++.+.|.+-|+|-.-
T Consensus 316 a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~---d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg 392 (764)
T KOG1063|consen 316 AGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK---DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG 392 (764)
T ss_pred ccceeeEEEcCCCCEEEEecccCcEEEEecc---CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccc
Confidence 4557888888887 78888999999999832 224555667788999999999999999999999999887775311
Q ss_pred ---------Ccc--------------------------------------------------------------------
Q 012007 355 ---------KHL-------------------------------------------------------------------- 357 (473)
Q Consensus 355 ---------~~~-------------------------------------------------------------------- 357 (473)
.+.
T Consensus 393 ~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnK 472 (764)
T KOG1063|consen 393 RQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNK 472 (764)
T ss_pred cccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCC
Confidence 000
Q ss_pred -------------------------------------------cccceeecCcceEEEEE--ecCCEEEEEeCCC-----
Q 012007 358 -------------------------------------------SHGGVLRGHKMAVLCLA--AAGNLVFSGSADR----- 387 (473)
Q Consensus 358 -------------------------------------------~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg----- 387 (473)
.....+.||...|.+++ ++++++|+++...
T Consensus 473 a~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehA 552 (764)
T KOG1063|consen 473 AFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHA 552 (764)
T ss_pred CCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccce
Confidence 00012346777787766 4599999998653
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
.|++|+..+ +..++.+.+|.-.|+.|+|+||++ +|++.|.|.++.+|+..+....-
T Consensus 553 vI~lw~t~~---W~~~~~L~~HsLTVT~l~FSpdg~-------------~LLsvsRDRt~sl~~~~~~~~~e 608 (764)
T KOG1063|consen 553 VIRLWNTAN---WLQVQELEGHSLTVTRLAFSPDGR-------------YLLSVSRDRTVSLYEVQEDIKDE 608 (764)
T ss_pred EEEEEeccc---hhhhheecccceEEEEEEECCCCc-------------EEEEeecCceEEeeeeecccchh
Confidence 499999988 777888999999999999999999 99999999999999997655433
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-21 Score=181.79 Aligned_cols=282 Identities=20% Similarity=0.260 Sum_probs=217.1
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeCCcc---ccccccC-cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCee
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE---FSGFKSN-SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNAS 196 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~---~~~~~~h-~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 196 (473)
...|.+++++ .+.||.+-.||.|.||++... ...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+.+.+..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence 4568888876 668999999999999997632 2233343 5789999999 4558999999999999999988765
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE--Eee
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE--SIN 274 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~ 274 (473)
..... ..+.|++++.+|.+..++.|+.||.+..++...++... .+.
T Consensus 104 ~~~d~--------------------------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~ 151 (691)
T KOG2048|consen 104 YNIDS--------------------------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM 151 (691)
T ss_pred EEecC--------------------------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc
Confidence 44432 56789999999999999999999988888887776654 344
Q ss_pred cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceee-eeeec-cCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 275 AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCL-AQVLL-KHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
...+.|.++.|.+++ .+++|+.||.|++||...+........ ...+. ....-|.++.|-.+ ..|++|.+-|+|.+|
T Consensus 152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FW 230 (691)
T KOG2048|consen 152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFW 230 (691)
T ss_pred cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEE
Confidence 566899999999999 599999999999999975432110000 01111 13445788888755 468899999999999
Q ss_pred ecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCc-eeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 352 ECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGA-HSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
|...+... +....|...|.|+.. +++++++++.|+.|..|...+... +........|...|.+++..++
T Consensus 231 d~~~gTLi-qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~------- 302 (691)
T KOG2048|consen 231 DSIFGTLI-QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN------- 302 (691)
T ss_pred cccCcchh-hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-------
Confidence 99876544 556678888988875 478999999999999998876433 3444555678889999999987
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.+++||.|.++.+=....
T Consensus 303 --------~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 303 --------ALISGGRDFTLAICSSRE 320 (691)
T ss_pred --------eEEecceeeEEEEccccc
Confidence 699999999998876655
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.6e-22 Score=183.96 Aligned_cols=247 Identities=19% Similarity=0.321 Sum_probs=198.2
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
-...|.++|++.+.+.||.+-.||.|.+|++...-.......+ +....|.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g------------------------------~~drsIE 73 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG------------------------------PEDRSIE 73 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec------------------------------CCCCcee
Confidence 3578999999999999999999999999999875332221111 2557899
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
+++|. ++..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.+ .++.|+.||.+..++... .......
T Consensus 74 ~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p----~~I~~~r 148 (691)
T KOG2048|consen 74 SLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP----DKITYKR 148 (691)
T ss_pred eEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCC----ceEEEEe
Confidence 99999 45678888889999999999999999999999999999999988 888999999777776642 2333344
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc-------eeecCcceEEEEEe-cCCEEEEEeCCCcEE
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG-------VLRGHKMAVLCLAA-AGNLVFSGSADRNIC 390 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~ 390 (473)
.+....+.|.+++|+|++..|+.|+.||.|++||..++..... .-++...-|.++.+ ....|++|..-|+|+
T Consensus 149 ~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~ 228 (691)
T KOG2048|consen 149 SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVT 228 (691)
T ss_pred ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEE
Confidence 5556679999999999999999999999999999987654431 11112222333322 477899999999999
Q ss_pred EEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+||... ..+++.+..|..-|.+|+..+++. .++++|.|+.|.-+.......
T Consensus 229 FWd~~~---gTLiqS~~~h~adVl~Lav~~~~d-------------~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 229 FWDSIF---GTLIQSHSCHDADVLALAVADNED-------------RVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEcccC---cchhhhhhhhhcceeEEEEcCCCC-------------eEEEccCCCceEEEEecCCcc
Confidence 999988 678888899999999999999988 899999999999998887754
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=2e-22 Score=179.53 Aligned_cols=289 Identities=18% Similarity=0.214 Sum_probs=215.3
Q ss_pred eeeeeeecccEEEEEec----CCEEEEeeCCCcEEEeeCC------ccccccccCcccEEEEEEeCCC-CEEEEEeCCCe
Q 012007 116 IGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIISGDS-NKIFTGHQDGK 184 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~----g~~l~tg~~dg~i~vwd~~------~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~ 184 (473)
...+.-|.+.|+++.|. -+++|+|..-|.|-+||+. ..+..+..|.++|.+|.|+|.. ..+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 44566788999999876 3689999999999999983 3355677899999999999965 68999999999
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
|++-|++........... .....+..+.|+.+...++.+..=|...+||+
T Consensus 259 iR~~D~~~~i~e~v~s~~------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLD------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDL 308 (498)
T ss_pred eeeeeecchhhHHHhhcC------------------------------ccceeeeeccccCCCccEEEeecccceEEEEe
Confidence 999999876432222211 03345677888888788888887789999999
Q ss_pred CCCee-eEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE
Q 012007 265 SDCKC-LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 265 ~~~~~-~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
++... ...+..|+..|..++++|-. ++++++.|++.+|||++.-.. +..+......|...|.+..|+|.+..|++
T Consensus 309 R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~--K~sp~lst~~HrrsV~sAyFSPs~gtl~T 386 (498)
T KOG4328|consen 309 RTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG--KASPFLSTLPHRRSVNSAYFSPSGGTLLT 386 (498)
T ss_pred ecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcC--CCCcceecccccceeeeeEEcCCCCceEe
Confidence 98655 66777899999999999986 899999999999999985432 22134566789999999999998877999
Q ss_pred eCCCCcEEEEecC---CcccccceeecCcce----E----EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC-
Q 012007 342 GSSDGLVNFWECE---KHLSHGGVLRGHKMA----V----LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH- 409 (473)
Q Consensus 342 ~~~dg~i~iwd~~---~~~~~~~~~~~~~~~----v----~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h- 409 (473)
.+.|..|+|||.. ....+...+ .|... . ..|.|+.+++++|-.-..|-|+|-.. .+.+..+...
T Consensus 387 T~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~---~q~v~el~~P~ 462 (498)
T KOG4328|consen 387 TCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNG---GQMVCELHDPE 462 (498)
T ss_pred eccCCceEEeecccccccCCcccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCC---CEEeeeccCcc
Confidence 9999999999984 212222222 12211 1 34567889999999999999999887 4555554433
Q ss_pred CCceeE-EEEecCCCCCcccccCCCccEEEEEee-CCCcEEEEEcC
Q 012007 410 TGPVKC-LAVEEDRDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVS 453 (473)
Q Consensus 410 ~~~V~~-l~~~~~~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~ 453 (473)
...|.+ ..|+|-+. .+++|+ ..|.|.||.-.
T Consensus 463 ~~tI~~vn~~HP~~~-------------~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 463 SSTIPSVNEFHPMRD-------------TLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccccceeeccccc-------------ceeccCCccceEEEEecC
Confidence 224544 47899876 355544 56778888643
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=3.6e-23 Score=179.99 Aligned_cols=210 Identities=17% Similarity=0.281 Sum_probs=172.5
Q ss_pred eeccCCeeEEEEcCCC--CEEEEEeCCCCEEEEEcCC----------------CeeeEEeecCCCceeEEEEcCC--CEE
Q 012007 232 IRHYDAVSCLSLNAEQ--GLLYSGSWDKTLKVWRISD----------------CKCLESINAHDDAINSVVAGFD--SLV 291 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~--~~l~s~s~dg~v~vwd~~~----------------~~~~~~~~~~~~~v~~l~~~~~--~~l 291 (473)
+.|.+.++.+.-.+-+ .+.++=+..|.|+|||+.. .+++.++.+|...=..++|+|- |.+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3588888888877754 4555556789999999842 3567888899999999999984 589
Q ss_pred EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeCCCCcEEEEecCCcc-cccceeecCcce
Q 012007 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGSSDGLVNFWECEKHL-SHGGVLRGHKMA 369 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~ 369 (473)
++|..-+.|++|....+ .-..-...+.+|...|..|+|+|. ..+|++|+.||+|+|||++.+. ......+.|..-
T Consensus 228 lsGDc~~~I~lw~~~~g---~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTG---SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccCccccceEeeeeccC---ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 99999999999988653 233334456679999999999995 4789999999999999999762 333345789999
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcE
Q 012007 370 VLCLAAAG--NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSV 447 (473)
Q Consensus 370 v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v 447 (473)
|..++|++ .+||+|+.||+++|||++.-+..+++..+..|..+|++|.|+|.... .|+++|.|..|
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s------------~iaasg~D~Qi 372 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS------------VIAASGEDNQI 372 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc------------eEEeccCCCcE
Confidence 99999873 48999999999999999987777899999999999999999998775 89999999999
Q ss_pred EEEEcCCCC
Q 012007 448 KVWRVSEHA 456 (473)
Q Consensus 448 ~iW~i~~~~ 456 (473)
.|||+.-..
T Consensus 373 tiWDlsvE~ 381 (440)
T KOG0302|consen 373 TIWDLSVEA 381 (440)
T ss_pred EEEEeeccC
Confidence 999997543
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.7e-22 Score=170.36 Aligned_cols=241 Identities=20% Similarity=0.305 Sum_probs=181.5
Q ss_pred cccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 157 FKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
...|.+.|+++.+.+ .|+|+++|+.||.|.|||++............ . .... .......+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~---------k---~~c~-----v~~~h~~~Hk 101 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA---------K---HKCI-----VAKQHENGHK 101 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee---------h---eeee-----ccccCCccce
Confidence 455889999999976 58999999999999999998654211100000 0 0000 0001112488
Q ss_pred CCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC----EEEEEeCCCcEEEEeCcccCC
Q 012007 236 DAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS----LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 236 ~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~----~l~s~~~dg~i~vwd~~~~~~ 310 (473)
-.|..+.|-| |...+.+++.|.+++|||..+.+....++ ..+.|..-+++|-. ++++|..|-.|++.|+..+
T Consensus 102 y~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-- 178 (397)
T KOG4283|consen 102 YAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-- 178 (397)
T ss_pred eeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC--
Confidence 8999999999 77799999999999999999998888876 45667777777643 7889999999999999643
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcE
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNI 389 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i 389 (473)
.....+.+|...|.++.|+|... .|++|+.||.|++||++... |..
T Consensus 179 ----s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras-----------------------------gcf 225 (397)
T KOG4283|consen 179 ----SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS-----------------------------GCF 225 (397)
T ss_pred ----cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc-----------------------------cee
Confidence 35678899999999999999765 57889999999999998631 233
Q ss_pred EEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCC
Q 012007 390 CLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLH 463 (473)
Q Consensus 390 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~ 463 (473)
++.|..+......++.-..|.+.|++++|..++. ++++++.|..+++|+..++...++.+.
T Consensus 226 ~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~-------------~l~~~gtd~r~r~wn~~~G~ntl~~~g 286 (397)
T KOG4283|consen 226 RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR-------------YLASCGTDDRIRVWNMESGRNTLREFG 286 (397)
T ss_pred EEeecccCccCccccccccccceeeeeeecccch-------------hhhhccCccceEEeecccCcccccccc
Confidence 3444433222334445568999999999999998 799999999999999999877666543
No 142
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-21 Score=186.05 Aligned_cols=315 Identities=16% Similarity=0.258 Sum_probs=229.3
Q ss_pred ceeeeeeecccEEEEEec--CC-EEEEeeCCCcEEEeeCCcc--ccc-cccCcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 115 LIGSIVRKEGHIYSLAAS--GD-LLYTGSDSKNIRVWKNLKE--FSG-FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~-~l~tg~~dg~i~vwd~~~~--~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
.+.+++.-.|.|++++|. |. .||+|+..|.+-+||+.+. +.. ...|.+.|....|.+....|++++.|..+++|
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 444444335999999985 65 7888888999999998733 333 34789999999999999999999999999999
Q ss_pred eCCCCCeeeE---Eee----------------------ccccccce----------------------------------
Q 012007 189 KVSRKNASVH---KRV----------------------GSLPTFKD---------------------------------- 209 (473)
Q Consensus 189 d~~~~~~~~~---~~~----------------------~~~~~~~~---------------------------------- 209 (473)
=.+++..... .+. .....+..
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 7664332100 000 00000000
Q ss_pred --eEeecCCC------cceE------------EEeecce-eeEeecc------CCeeEEEEcCCCCEEEEEeCCCCEEEE
Q 012007 210 --YVKSSVNP------KNYV------------EVRRNRS-VLKIRHY------DAVSCLSLNAEQGLLYSGSWDKTLKVW 262 (473)
Q Consensus 210 --~~~~~~~~------~~~~------------~~~~~~~-~~~~~~~------~~v~~l~~~~~~~~l~s~s~dg~v~vw 262 (473)
.+...... .+.+ ..+.... ...+.+. ..+++++.++.|++.+.|+..|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 00000000 0000 0000000 1112233 578899999999999999999999999
Q ss_pred EcCCCeeeEEe---ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE
Q 012007 263 RISDCKCLESI---NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV 338 (473)
Q Consensus 263 d~~~~~~~~~~---~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 338 (473)
++.+|-....+ ++|+.+|+.++...-+ .+++++.+|.+++||.... .+. ....-...++++.++.....
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k------~l~-~~l~l~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK------VLK-KSLRLGSSITGIVYHRVSDL 548 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc------cee-eeeccCCCcceeeeeehhhh
Confidence 99999888888 5899999999987666 8999999999999998622 122 22233567888999988899
Q ss_pred EEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEE
Q 012007 339 VYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCL 416 (473)
Q Consensus 339 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l 416 (473)
++.+..|-.|+++|..+. .....+.+|...++.+ ++||++|++++.|++|++||+.+ ..++-.+. -..+++.+
T Consensus 549 ~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt---~~lID~~~-vd~~~~sl 623 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT---GTLIDGLL-VDSPCTSL 623 (910)
T ss_pred hhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC---cceeeeEe-cCCcceee
Confidence 999999999999999874 4557888999888655 56799999999999999999999 45555443 35688999
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCC-CcEEEEEcCC
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLD-KSVKVWRVSE 454 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~D-g~v~iW~i~~ 454 (473)
.|+|++. +|||...| .-|++|.=..
T Consensus 624 s~SPngD-------------~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 624 SFSPNGD-------------FLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EECCCCC-------------EEEEEEecCceEEEEEchh
Confidence 9999999 99999998 6799997443
No 143
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=1e-22 Score=183.05 Aligned_cols=256 Identities=13% Similarity=0.216 Sum_probs=203.2
Q ss_pred EEEEEecC-CEEEEe--eCCCcEEEeeCCcc---cc---ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCee
Q 012007 126 IYSLAASG-DLLYTG--SDSKNIRVWKNLKE---FS---GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNAS 196 (473)
Q Consensus 126 V~~~~~~g-~~l~tg--~~dg~i~vwd~~~~---~~---~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 196 (473)
+.++.|+. .+|+++ +.|..|++|.-... +. ...+. .-.|++......|+++|+..+.|+|||+....+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 56777763 345555 55889999964322 11 12222 3344444445589999999999999999854322
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecC
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH 276 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 276 (473)
.... +|.+.|+++.++....+|++++..|.|.|..+.++.....|...
T Consensus 115 r~lk--------------------------------dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 115 RFLK--------------------------------DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred hhcc--------------------------------CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence 2111 49999999999999999999999999999999998888888755
Q ss_pred -CCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeCCCCcEEEEe
Q 012007 277 -DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGSSDGLVNFWE 352 (473)
Q Consensus 277 -~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd 352 (473)
...|.-+.+++.. +|.+++.+|.|.+||+. ...........|..+...|+|+|. ..+|++.+.|..|.+||
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~-----g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ-----GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEecc-----CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 3455688888876 78899999999999997 333345567789999999999994 56788899999999999
Q ss_pred cCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 353 CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 353 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
.+...........|.....+|.++|.+|++|...|.|..||++.. ..++.++..|...|++++|.+..
T Consensus 238 ~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~--k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 238 IRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST--KAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC--CCCceEeeecccceeEEEeeecc
Confidence 998777767777888888999999999999999999999999974 57888999999999999999874
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.5e-22 Score=189.96 Aligned_cols=242 Identities=18% Similarity=0.242 Sum_probs=192.6
Q ss_pred ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 158 KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 158 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
..|...-+.|+|.++|.+|++|+.||.|++|+........... ..+...
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-------------------------------~~~g~~ 58 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-------------------------------DISGEL 58 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-------------------------------hccCce
Confidence 3588889999999999999999999999999987652111100 015666
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
|.+++. .+++|++|+.+++|.+|.+.+++.-..+....-++.+++++.+| +++.|+.|-.|++.+..... .
T Consensus 59 v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s------~ 130 (933)
T KOG1274|consen 59 VSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS------Q 130 (933)
T ss_pred eEEEee--cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc------h
Confidence 777765 45699999999999999998887665555566789999999887 89999999999999986433 4
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce---ee------cCcceEEEEEecCCEEEEEeCCC
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV---LR------GHKMAVLCLAAAGNLVFSGSADR 387 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~------~~~~~v~~~~~~~~~l~s~~~dg 387 (473)
...+.+|..+|.++.|+|++++||+.+.||.|++||+.++...... .+ .......+|+|++..|+..+.|+
T Consensus 131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~ 210 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN 210 (933)
T ss_pred heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC
Confidence 5778999999999999999999999999999999999865332211 00 11122356777877888888899
Q ss_pred cEEEEecCCCCceeEEEEecC--CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 388 NICLWRREESGAHSCLAVLTG--HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.|++|+..+ +.....+.. +...+.+++|+|.|. +||+++.||.|.|||+.+
T Consensus 211 ~Vkvy~r~~---we~~f~Lr~~~~ss~~~~~~wsPnG~-------------YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 211 TVKVYSRKG---WELQFKLRDKLSSSKFSDLQWSPNGK-------------YIAASTLDGQILVWNVDT 263 (933)
T ss_pred eEEEEccCC---ceeheeecccccccceEEEEEcCCCc-------------EEeeeccCCcEEEEeccc
Confidence 999999988 555555543 445599999999999 999999999999999996
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.3e-22 Score=180.17 Aligned_cols=225 Identities=20% Similarity=0.307 Sum_probs=175.2
Q ss_pred CCEEEEeeCCCcEEEeeCC--c---cc------------------cccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEE
Q 012007 133 GDLLYTGSDSKNIRVWKNL--K---EF------------------SGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIW 188 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~--~---~~------------------~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vw 188 (473)
|+|+|.|+.|..|.|||+. . +. ..-.+|+.+|.++.|+.+- +.||+|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 7799999999999999852 0 00 0123689999999997753 589999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCC
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
|+.++++..... .|.+.|.++.|+| ...+|++|+.|++|.+.|++..
T Consensus 272 D~~~g~p~~s~~--------------------------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 272 DVDTGKPKSSIT--------------------------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred EcCCCCcceehh--------------------------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 999998765544 3899999999999 5679999999999999999853
Q ss_pred eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCC
Q 012007 268 KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSS 344 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~ 344 (473)
......-...+.|-.++|.+.. .++++..||.|+-+|+|.. ..++..+..|...|.+|++++.- .++++++.
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-----~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~ 394 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-----GKPVWTLKAHDDEISGLSVNIQTPGLLSTAST 394 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC-----CCceeEEEeccCCcceEEecCCCCcceeeccc
Confidence 3322222245678999998876 7889999999999999943 35678889999999999999854 67889999
Q ss_pred CCcEEEEecCCcccccceeecCc---ceEEEEEec---CCEEEEEeCCCcEEEEecCC
Q 012007 345 DGLVNFWECEKHLSHGGVLRGHK---MAVLCLAAA---GNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~ 396 (473)
|+.|++|++...... ....|. +...|++++ .-.++.|+..+.++|||+.+
T Consensus 395 d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 395 DKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred cceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 999999998743221 112222 124555554 45788889888999999987
No 146
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=2.2e-22 Score=185.89 Aligned_cols=121 Identities=19% Similarity=0.298 Sum_probs=104.5
Q ss_pred ccEEEEEEcc-CCCEEEEeCCCCcEEEEecCC------cccccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEec
Q 012007 325 NAVTALAVNQ-ESAVVYCGSSDGLVNFWECEK------HLSHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRR 394 (473)
Q Consensus 325 ~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~ 394 (473)
..|+.+.|.| |...|++++.||.|++|.+.. ......++..|...|+.+.+. .+.|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 4578889999 678899999999999999864 234456788999999998876 689999999999999999
Q ss_pred CCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 395 EESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 395 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
.+ ......+.+|++.|.+++|+|+++ .+|+.+.||+|+||+-.+.+..+..
T Consensus 708 ~~---~~~~~~l~gHtdqIf~~AWSpdGr-------------~~AtVcKDg~~rVy~Prs~e~pv~E 758 (1012)
T KOG1445|consen 708 AN---AKLYSRLVGHTDQIFGIAWSPDGR-------------RIATVCKDGTLRVYEPRSREQPVYE 758 (1012)
T ss_pred hh---hhhhheeccCcCceeEEEECCCCc-------------ceeeeecCceEEEeCCCCCCCcccc
Confidence 98 566778899999999999999999 8999999999999999887655543
No 147
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.6e-22 Score=171.82 Aligned_cols=274 Identities=14% Similarity=0.292 Sum_probs=203.2
Q ss_pred CEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 134 DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISG--DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
..+|++...|.|++||.. +.+..++++...++.++|.. ....+.+|+.||+|++||+.............
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~------ 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ------ 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC------
Confidence 578999999999999865 47888999999999999977 45789999999999999998876544443321
Q ss_pred eEeecCCCcceEEEeecceeeEeecc-CCeeEEEEcCCCCEEEEEe----CCCCEEEEEcCCCee-eEEe-ecCCCceeE
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHY-DAVSCLSLNAEQGLLYSGS----WDKTLKVWRISDCKC-LESI-NAHDDAINS 282 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~s~s----~dg~v~vwd~~~~~~-~~~~-~~~~~~v~~ 282 (473)
+. .+..|++.+..++.+++|. .|-.|.+||++..+. +..+ ..|.+.|++
T Consensus 115 ------------------------~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~ 170 (376)
T KOG1188|consen 115 ------------------------QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQ 170 (376)
T ss_pred ------------------------CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCccee
Confidence 32 4667777777788888885 356799999998766 5554 579999999
Q ss_pred EEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccc
Q 012007 283 VVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 283 l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 359 (473)
+.|+|.. +|++|+.||.|.+||+.... ....+.....|...|.++.|..++ +.|.+-+......+|+++.+...
T Consensus 171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~---EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDN---EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred EEecCCCCCeEEeecccceEEeeecCCCc---chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 9999986 99999999999999997542 223344556778889999999877 45888888999999999865432
Q ss_pred cceeec------------CcceEEEEEec-CCEEEEEeC-CCcEEEEecC---CCCceeEEEEecC-CCCceeEEEEecC
Q 012007 360 GGVLRG------------HKMAVLCLAAA-GNLVFSGSA-DRNICLWRRE---ESGAHSCLAVLTG-HTGPVKCLAVEED 421 (473)
Q Consensus 360 ~~~~~~------------~~~~v~~~~~~-~~~l~s~~~-dg~i~iwd~~---~~~~~~~~~~~~~-h~~~V~~l~~~~~ 421 (473)
...... ...-|.+.++. ...++.++. -+...++-+. ++.....+..+.+ |...|.++.|...
T Consensus 248 ~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~ 327 (376)
T KOG1188|consen 248 TWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK 327 (376)
T ss_pred hcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc
Confidence 211111 11223344443 444555444 5666666544 3333455666666 7778899999877
Q ss_pred CCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 422 RDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+. +++|||.||.+.+|...
T Consensus 328 ~~-------------~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 328 ND-------------VLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cc-------------eeeccCCCceEEEEecC
Confidence 76 89999999999999964
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3e-24 Score=201.00 Aligned_cols=199 Identities=26% Similarity=0.453 Sum_probs=177.0
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
|...|.|+..-..++.+++|++|..+-+|.+.....+..+.+|..+|.++.++... +|++|+.+|+|++||++.
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee----- 101 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE----- 101 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-----
Confidence 88899999987788999999999999999998888888899999999999999887 888999999999999973
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNIC 390 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~ 390 (473)
...+..+.+|...+.++.|+|-+.+.+.|+.|+.+++||.+.. -+...+.+|...+ ..|+|+|++++.|++|..++
T Consensus 102 -Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 102 -AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred -hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 2345688999999999999999999999999999999999853 3345666777655 55778999999999999999
Q ss_pred EEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
|||... ++.+..|..|.+.|..+.|+|..- ++++||.|++|++||+.+.
T Consensus 180 i~d~~a---gk~~~ef~~~e~~v~sle~hp~e~-------------Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 180 IWDLTA---GKLSKEFKSHEGKVQSLEFHPLEV-------------LLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred eecccc---cccccccccccccccccccCchhh-------------hhccCCCCceeeeecccee
Confidence 999987 678889999999999999999887 8999999999999999843
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=167.37 Aligned_cols=265 Identities=15% Similarity=0.228 Sum_probs=203.3
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCccc--------------ccccc-CcccEEEEEEe-------CCCCEEEEEeCCCeE
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKEF--------------SGFKS-NSGLVKAIIIS-------GDSNKIFTGHQDGKI 185 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~~--------------~~~~~-h~~~V~~l~~s-------~~~~~l~s~~~dg~i 185 (473)
.++|||..|++-+.|..+++|++.... ..++- ....|...+|- |+.+++++.+.|.-|
T Consensus 56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PI 135 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPI 135 (406)
T ss_pred eeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCce
Confidence 578899999999999999999753111 11111 23567788885 577899999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC---CeeEEEEcCCCCEEEEEeCCCCEEEE
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD---AVSCLSLNAEQGLLYSGSWDKTLKVW 262 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~l~s~s~dg~v~vw 262 (473)
++||.-+++.......- .|.+ +..+++|+|||.+|++|. ..+|+++
T Consensus 136 h~wdaftG~lraSy~~y------------------------------dh~de~taAhsL~Fs~DGeqlfaGy-krcirvF 184 (406)
T KOG2919|consen 136 HLWDAFTGKLRASYRAY------------------------------DHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVF 184 (406)
T ss_pred eeeeccccccccchhhh------------------------------hhHHhhhhheeEEecCCCCeEeecc-cceEEEe
Confidence 99999998865544321 1333 346899999999999876 6899999
Q ss_pred Ec-CCCeee--EEee-----cCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEE
Q 012007 263 RI-SDCKCL--ESIN-----AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV 332 (473)
Q Consensus 263 d~-~~~~~~--~~~~-----~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 332 (473)
|+ +.|+.. .... +..+.+.|++++|.. .++.|+....+-||.-. ...+...+.+|.+.|+.+.|
T Consensus 185 dt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~------~~~pl~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 185 DTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD------GRRPLQLLGGHGGGVTHLQW 258 (406)
T ss_pred eccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC------CCCceeeecccCCCeeeEEe
Confidence 99 455422 1112 336788999999976 78999999988888764 33456777899999999999
Q ss_pred ccCCCEEEEeCC-CCcEEEEecCCcccccceeecCcc-e----EEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe
Q 012007 333 NQESAVVYCGSS-DGLVNFWECEKHLSHGGVLRGHKM-A----VLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL 406 (473)
Q Consensus 333 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-~----v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 406 (473)
.++|+.|++|.. |-.|..||++....+...+..|.. . ...+.+.+++|++|+.||.|++||+++. ...+..+
T Consensus 259 ~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~--gn~~sv~ 336 (406)
T KOG2919|consen 259 CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL--GNEVSVT 336 (406)
T ss_pred ccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC--CCccccc
Confidence 999999999876 678999999987666666666654 2 2455677999999999999999999874 2356677
Q ss_pred cCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC
Q 012007 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD 444 (473)
Q Consensus 407 ~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D 444 (473)
..|...|+.++++|--+ ++++++..
T Consensus 337 ~~~sd~vNgvslnP~mp-------------ilatssGq 361 (406)
T KOG2919|consen 337 GNYSDTVNGVSLNPIMP-------------ILATSSGQ 361 (406)
T ss_pred ccccccccceecCcccc-------------eeeeccCc
Confidence 78899999999999977 78887754
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=3.2e-21 Score=169.54 Aligned_cols=302 Identities=16% Similarity=0.242 Sum_probs=202.0
Q ss_pred ccEEEEEec---CCEEEEeeCCCcEEEeeCC-----------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 124 GHIYSLAAS---GDLLYTGSDSKNIRVWKNL-----------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 124 ~~V~~~~~~---g~~l~tg~~dg~i~vwd~~-----------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.+|+++.+. ...||||+.|..|++|.+. +-+..+..|..+|+++.|+|+|..|++|+.+|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 467777765 3389999999999999643 12445778999999999999999999999999999998
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
...-....... ....+...++ ......+|.+.|..++|++++.++++++.|..+++||+..|+.
T Consensus 94 ~~~~~~~~~d~-----------e~~~~ke~w~-----v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 94 QGDVRIFDADT-----------EADLNKEKWV-----VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL 157 (434)
T ss_pred ecCcCCccccc-----------hhhhCccceE-----EEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee
Confidence 76411100000 0000111111 1122335999999999999999999999999999999999999
Q ss_pred eEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCccee--eee--ee---------ccCC----ccEEEEE
Q 012007 270 LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHC--LAQ--VL---------LKHE----NAVTALA 331 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~--~~---------~~~~----~~v~~l~ 331 (473)
+..+..|...+..++|.|.+ ++++-+.|...+.+.+.......... ... .. .-|+ .-...++
T Consensus 158 ~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 158 LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred EeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 99999999999999999987 77788888876666654322111100 000 00 0111 1234578
Q ss_pred EccCCCEEEEeCC----CC-----cEEEEecCCcccccceeecCcceEEEEEe--------------------cCCEEEE
Q 012007 332 VNQESAVVYCGSS----DG-----LVNFWECEKHLSHGGVLRGHKMAVLCLAA--------------------AGNLVFS 382 (473)
Q Consensus 332 ~~~~~~~l~~~~~----dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--------------------~~~~l~s 382 (473)
|+|+|.+|++... .+ ..++|+-.....+...+..-...+..+.+ -+..++.
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfai 317 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAI 317 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEE
Confidence 9999999887542 22 23455543322332223322222222211 1334556
Q ss_pred EeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 383 GSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 383 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
++ .+.|.|||.+...+..++. .-|-..|++++|++++. +++..|.||...+-.+...+.
T Consensus 318 At-~~svyvydtq~~~P~~~v~--nihy~~iTDiaws~dg~-------------~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 318 AT-KNSVYVYDTQTLEPLAVVD--NIHYSAITDIAWSDDGS-------------VLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ee-cceEEEeccccccceEEEe--eeeeeeecceeecCCCc-------------EEEEeccCCceEEEEEcchhc
Confidence 65 4579999998843333333 34778899999999999 899999999988877765543
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=2.7e-21 Score=165.49 Aligned_cols=284 Identities=18% Similarity=0.262 Sum_probs=205.7
Q ss_pred eeecccEEEEEec-------CCEEEEeeCCCcEEEeeCCc-----cccccc--cCcccEEEEEEeCC----CCEEEEEeC
Q 012007 120 VRKEGHIYSLAAS-------GDLLYTGSDSKNIRVWKNLK-----EFSGFK--SNSGLVKAIIISGD----SNKIFTGHQ 181 (473)
Q Consensus 120 ~~h~~~V~~~~~~-------g~~l~tg~~dg~i~vwd~~~-----~~~~~~--~h~~~V~~l~~s~~----~~~l~s~~~ 181 (473)
..|...|+.++++ .+.+|+.|.+ .+.+|+... .+..+. .|.+....++|+-+ ..+||.||.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 4566778887775 3367777764 788886432 222222 36778888899654 358999999
Q ss_pred CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEE
Q 012007 182 DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLK 260 (473)
Q Consensus 182 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~ 260 (473)
-|.|+|.|+.+++...... +|...|+.|.+.|+ .+++++++.|..|+
T Consensus 114 ~GvIrVid~~~~~~~~~~~--------------------------------ghG~sINeik~~p~~~qlvls~SkD~svR 161 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYR--------------------------------GHGGSINEIKFHPDRPQLVLSASKDHSVR 161 (385)
T ss_pred eeEEEEEecchhhhcccee--------------------------------ccCccchhhhcCCCCCcEEEEecCCceEE
Confidence 9999999999887654443 59999999999995 47999999999999
Q ss_pred EEEcCCCeeeEEe---ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc---------------------ee
Q 012007 261 VWRISDCKCLESI---NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK---------------------HC 315 (473)
Q Consensus 261 vwd~~~~~~~~~~---~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~---------------------~~ 315 (473)
+|++++..++..+ .+|.+.|.++.|+.++ +|++++.|..|++|++...+-... ..
T Consensus 162 lwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f 241 (385)
T KOG1034|consen 162 LWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF 241 (385)
T ss_pred EEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence 9999999999887 4799999999999998 999999999999999872211000 00
Q ss_pred e-eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc-ccccc---------ee---e--cCcceEEEEEec--C
Q 012007 316 L-AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH-LSHGG---------VL---R--GHKMAVLCLAAA--G 377 (473)
Q Consensus 316 ~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~---------~~---~--~~~~~v~~~~~~--~ 377 (473)
+ .....-|...|-|+.|- |+++++-+-++.|..|...+. ..... ++ . .....-..+++| +
T Consensus 242 p~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~ 319 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ 319 (385)
T ss_pred ccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH
Confidence 0 01234567777777775 578999899999999987321 11000 11 1 111222344444 8
Q ss_pred CEEEEEeCCCcEEEEecCCCCceeEEEEec--CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 378 NLVFSGSADRNICLWRREESGAHSCLAVLT--GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 378 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
++||.|...|.|.+||++...+..+ .++. .-...|...+|+.|+. +|+..++|++|.-||.
T Consensus 320 ~~la~gnq~g~v~vwdL~~~ep~~~-ttl~~s~~~~tVRQ~sfS~dgs-------------~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 320 KMLALGNQSGKVYVWDLDNNEPPKC-TTLTHSKSGSTVRQTSFSRDGS-------------ILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHhhccCCCcEEEEECCCCCCccC-ceEEeccccceeeeeeecccCc-------------EEEEEeCCCcEEEEEe
Confidence 8999999999999999998544322 2222 2245799999999998 8999999999999985
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2e-22 Score=198.50 Aligned_cols=270 Identities=19% Similarity=0.252 Sum_probs=203.3
Q ss_pred eCCCcEEEeeCC--ccc---cccc--cCcccEEEEEEeCCCCE----EEEEeCCCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 140 SDSKNIRVWKNL--KEF---SGFK--SNSGLVKAIIISGDSNK----IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 140 ~~dg~i~vwd~~--~~~---~~~~--~h~~~V~~l~~s~~~~~----l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
+.+.++.||.+. ... +..- .-....+.++|.+.|.. |+.|..||.|.+||....... .....+
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~--~~~~~l---- 109 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN--ASEEVL---- 109 (1049)
T ss_pred ccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccC--cchHHH----
Confidence 445677777532 111 1111 12457889999887765 888999999999998753100 000000
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEEcCCCeeeEEee--cCCCceeEEEE
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESIN--AHDDAINSVVA 285 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~ 285 (473)
...-.|++.|..+.|++.. ++|++|+.||.|.|||+.+.+.-.... ...+.|.++.|
T Consensus 110 --------------------a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 110 --------------------ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred --------------------hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 0111399999999999954 599999999999999998755444432 24578999999
Q ss_pred cCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccC--CccEEEEEEccCC-CEEEEeCCCC---cEEEEecCCcc
Q 012007 286 GFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH--ENAVTALAVNQES-AVVYCGSSDG---LVNFWECEKHL 357 (473)
Q Consensus 286 ~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~-~~l~~~~~dg---~i~iwd~~~~~ 357 (473)
+..- .|++++.+|.+.|||++... .+..+..+ ...+..++|+|+. ..|++++.|. .|.+||++...
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~------pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKK------PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCC------cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence 8764 78999999999999998321 22222222 2457899999976 4455555543 69999999888
Q ss_pred cccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCc
Q 012007 358 SHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQ 434 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~ 434 (473)
...+++.+|...|++++|+ ..+|++++.|+.|.+|+.++ .+.+..+......+..+.|.|....
T Consensus 244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t---gEvl~~~p~~~nW~fdv~w~pr~P~---------- 310 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT---GEVLGELPAQGNWCFDVQWCPRNPS---------- 310 (1049)
T ss_pred CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC---ceEeeecCCCCcceeeeeecCCCcc----------
Confidence 8888899999999999985 58999999999999999999 6788888888889999999998875
Q ss_pred cEEEEEeeCCCcEEEEEcCCCC
Q 012007 435 RWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 435 ~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+|+.++.||.|.|+.+....
T Consensus 311 --~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 311 --VMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred --hhhhheeccceeeeeeecCC
Confidence 89999999999999998765
No 153
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=3.9e-21 Score=161.71 Aligned_cols=277 Identities=20% Similarity=0.276 Sum_probs=200.8
Q ss_pred eeeeeeecccEEEEEec---CCEEEEeeCC-------CcEEEeeCCccccc-----------cc-cCcccEEEEEEeCCC
Q 012007 116 IGSIVRKEGHIYSLAAS---GDLLYTGSDS-------KNIRVWKNLKEFSG-----------FK-SNSGLVKAIIISGDS 173 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~---g~~l~tg~~d-------g~i~vwd~~~~~~~-----------~~-~h~~~V~~l~~s~~~ 173 (473)
...|..|.|.|+.++.+ .++|+|+..+ ..+-||.+.+.+.. +. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 34567788999998854 6677777542 25778976543322 32 355789999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC--CCCEEE
Q 012007 174 NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA--EQGLLY 251 (473)
Q Consensus 174 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~ 251 (473)
..|++-. |..|.+|+++............. ..++....++-+|+| +++.++
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~--------------------------s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSE--------------------------SAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccc--------------------------cccccceecccccCCCCccceEE
Confidence 9998865 78999999987765321111100 012566778889998 788888
Q ss_pred EEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE
Q 012007 252 SGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT 328 (473)
Q Consensus 252 s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 328 (473)
+.+ |+++..||+++.++...++ +|...|..+.|+|+. .|++|+.||.|++||.+ ....++..+.+|...|.
T Consensus 189 tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R-----~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 189 TTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR-----KTKFPVQELPGHSHWVW 262 (370)
T ss_pred EeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc-----CCCccccccCCCceEEE
Confidence 776 7999999999988877764 788999999999987 89999999999999998 56667889999999999
Q ss_pred EEEEccC-CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCC--CcEEEEecCCCCceeEEEE
Q 012007 329 ALAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD--RNICLWRREESGAHSCLAV 405 (473)
Q Consensus 329 ~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~ 405 (473)
++.|+|. .++|++|+.|..|.+|-...-.....+..++...-. -..| ..++ -+. ...+.+
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~-----------e~~dseer~k--pL~----dg~l~t 325 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESES-----------EDEDSEERVK--PLQ----DGQLET 325 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEeccccccccccccccccccC-----------cchhhHHhcc--ccc----cccccc
Confidence 9999994 578889999999999976532211111111111000 0001 1111 111 234677
Q ss_pred ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 406 ~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+..|...|.+++|+.-.+ |+||+-+.||.|.|=++..
T Consensus 326 ydehEDSVY~~aWSsadP------------WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 326 YDEHEDSVYALAWSSADP------------WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccceEEEeeccCCC------------eeEEEeccCceEEeecCCh
Confidence 889999999999998776 6999999999999877754
No 154
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.5e-21 Score=166.77 Aligned_cols=295 Identities=14% Similarity=0.180 Sum_probs=213.0
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--------cccccc-ccCcccEEEEEEeCCCCEEEEEeCCCe
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--------KEFSGF-KSNSGLVKAIIISGDSNKIFTGHQDGK 184 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--------~~~~~~-~~h~~~V~~l~~s~~~~~l~s~~~dg~ 184 (473)
..-+.+|.|.|.++.|+ +++||+|+.|..++||++. +.+... ..|...|.|++|....++|++|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 34577899999998886 8899999999999999854 222222 235689999999999999999999999
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
|..-|+++.+.+...... ...+.|..+..+|..+.|++.+.++.|.+||.
T Consensus 129 VI~HDiEt~qsi~V~~~~------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~ 178 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANEN------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDN 178 (609)
T ss_pred eEeeecccceeeeeeccc------------------------------CcccceeecccCCCCceEEEEecCceEEEEec
Confidence 999999988754433311 13348999999999999999999999999999
Q ss_pred CCCe-eeE--EeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCccee-eeeeeccCCccEEEEEEccCCCE
Q 012007 265 SDCK-CLE--SINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHC-LAQVLLKHENAVTALAVNQESAV 338 (473)
Q Consensus 265 ~~~~-~~~--~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~ 338 (473)
+... .+. .+.........+.|+|.. +|++.+..+-+.+||++......... ....+......-..+.|+|+|..
T Consensus 179 Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q 258 (609)
T KOG4227|consen 179 RDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ 258 (609)
T ss_pred cCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe
Confidence 8755 221 122234566778888886 88999999999999998543211000 00111112233467899999999
Q ss_pred EEEeCCCCcEEEEecCCcccccceeecCc-------ceEEEEEec-CCEEEEEeCCCcEEEEecCCC----C--------
Q 012007 339 VYCGSSDGLVNFWECEKHLSHGGVLRGHK-------MAVLCLAAA-GNLVFSGSADRNICLWRREES----G-------- 398 (473)
Q Consensus 339 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~----~-------- 398 (473)
|++--....-.+||+-.......... |. ..+.++.+- ..-+++|+.+-.|++|.+... +
T Consensus 259 ~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~ 337 (609)
T KOG4227|consen 259 FMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDE 337 (609)
T ss_pred ehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcch
Confidence 88877666677888876444332222 21 122233333 344899999999999998531 1
Q ss_pred --------ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 399 --------AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 399 --------~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
....+.++.||...++.+.|+|... +|++.|..+.++||.-..
T Consensus 338 ~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~-------------~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 338 EEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN-------------LLVSSGVENSFKLWSDHR 388 (609)
T ss_pred hhCchhheecceeEEEecccccccceeecCCcc-------------eEeccchhhheecccccc
Confidence 1234667899999999999999987 899999999999997543
No 155
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=1.6e-19 Score=167.63 Aligned_cols=255 Identities=9% Similarity=0.089 Sum_probs=170.9
Q ss_pred EEEEecCCEE-EEeeCCCcEEEeeCCc--cccccccCcccEEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCeeeEEeec
Q 012007 127 YSLAASGDLL-YTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 127 ~~~~~~g~~l-~tg~~dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.+++++|+.+ ++++.++.|++||... ....+..+. .+..++|+|+++.++++ +.|+.|++||+.+.+......
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-- 112 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-- 112 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--
Confidence 3455678766 5677899999999753 333344333 35788999999977655 568999999998765332221
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC-CEEEEEcCCCeeeEEeecCCCcee
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK-TLKVWRISDCKCLESINAHDDAIN 281 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~~v~ 281 (473)
+...+.+++|+|++.+++++..++ .+.+||..+++.+..+.. .....
T Consensus 113 -------------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~ 160 (300)
T TIGR03866 113 -------------------------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPR 160 (300)
T ss_pred -------------------------------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCcc
Confidence 233467899999999999998775 467789988887665543 33457
Q ss_pred EEEEcCCC-EE-EEEeCCCcEEEEeCcccCCCcceeeee-eeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecCCcc
Q 012007 282 SVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKHCLAQ-VLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHL 357 (473)
Q Consensus 282 ~l~~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~ 357 (473)
++.|++++ .+ +++..++.|++||++............ ...........++|+|+++++++ ...++.|.+||+++..
T Consensus 161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 78999988 45 445569999999997432111000000 00001112456889999998655 3556789999998755
Q ss_pred cccceeecCcceEEEEEecCCEEEEE-eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 358 SHGGVLRGHKMAVLCLAAAGNLVFSG-SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
.......++.....+++++|++|+++ +.++.|.+||+.+ .+++..+... ...+.|+++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~---~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 241 VLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA---LKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC---CcEEEEEEcc-cccceeEeCC
Confidence 44333334444445667789998886 4689999999998 4566666544 4458888765
No 156
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.87 E-value=2.6e-21 Score=160.85 Aligned_cols=283 Identities=14% Similarity=0.195 Sum_probs=197.4
Q ss_pred eeeeecccEEEEEec-CCEEEEeeCCCcEEEeeCC--ccccccc-cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 118 SIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFK-SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~--~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
.|++|.+.|+++.|+ ..+|++|..-|.|++|++. +....++ .|...|+.+..-|+ ..|.+-+.|+.+.+|++...
T Consensus 9 vLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s 87 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS 87 (323)
T ss_pred EeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCc
Confidence 456899999999998 6689999999999999865 4455666 57788999999887 47889999999999999875
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-----CC----CEEEEEeCC-CCEEEEE
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-----EQ----GLLYSGSWD-KTLKVWR 263 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~----~~l~s~s~d-g~v~vwd 263 (473)
....... =.++++-|.+ ++ ..++.-+.. ..+.+-|
T Consensus 88 ~~i~i~S-----------------------------------i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 88 AFISIHS-----------------------------------IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred ceEEEee-----------------------------------eeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 4332222 1122222221 11 011111100 0122233
Q ss_pred cCCCeeeEEe----ecCCCceeEEEEcCC-C---EEEEEeCCCcEEEEeCcccCCC----cceeeeeeeccCCccEEEEE
Q 012007 264 ISDCKCLESI----NAHDDAINSVVAGFD-S---LVFTGSADGTVKVWRRELQGKG----TKHCLAQVLLKHENAVTALA 331 (473)
Q Consensus 264 ~~~~~~~~~~----~~~~~~v~~l~~~~~-~---~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~v~~l~ 331 (473)
......+... ....+.+.|..+..+ + ++++|..+|.+.+||+..+.+. ...........|..+|.++.
T Consensus 133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld 212 (323)
T KOG0322|consen 133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD 212 (323)
T ss_pred cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence 2222222221 123456777765433 2 6889999999999999865321 11223344567899999999
Q ss_pred EccCCCEEEEeCCCCcEEEEecCCcc---cccc--eeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe
Q 012007 332 VNQESAVVYCGSSDGLVNFWECEKHL---SHGG--VLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL 406 (473)
Q Consensus 332 ~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 406 (473)
|.+....=++|+.+..+..|++.... +... .++.....-..+.+|++.+|+++.|+.|+||..++ ..++..+
T Consensus 213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt---l~pLAVL 289 (323)
T KOG0322|consen 213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT---LNPLAVL 289 (323)
T ss_pred echhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc---CCchhhh
Confidence 99876666788888899999886431 1111 12222333467889999999999999999999999 6889999
Q ss_pred cCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 407 ~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
..|.+.|++++|+|+.+ ++|++|.|++|.+|++
T Consensus 290 kyHsagvn~vAfspd~~-------------lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSPDCE-------------LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhcceeEEEeCCCCc-------------hhhhccCCceEEeeec
Confidence 99999999999999977 8999999999999986
No 157
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.6e-21 Score=161.79 Aligned_cols=210 Identities=15% Similarity=0.212 Sum_probs=158.2
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee--EEe--ecCCCceeEEEEcCCC--EEEEEeCCCcEEEEe
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL--ESI--NAHDDAINSVVAGFDS--LVFTGSADGTVKVWR 304 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~--~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd 304 (473)
+.+|.+.|++++|+.||++|++++.|+.|++|++++.... +.+ ...-+.-+.+.|.||. .++++-...++++|.
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk 161 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYK 161 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEE
Confidence 3469999999999999999999999999999999864321 111 1122356788999986 677777888999998
Q ss_pred CcccCCCcce------eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee-cCcceEEEEEecC
Q 012007 305 RELQGKGTKH------CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR-GHKMAVLCLAAAG 377 (473)
Q Consensus 305 ~~~~~~~~~~------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~ 377 (473)
+.....+... ........|.-.+..+-...++.+|++++.|..|.+|+++. ..+..+-. .....-.+++|+|
T Consensus 162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q~L~~idtnq~~n~~aavSP~G 240 (420)
T KOG2096|consen 162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-QLLQSIDTNQSSNYDAAVSPDG 240 (420)
T ss_pred eeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-ceeeeeccccccccceeeCCCC
Confidence 7543322111 11123345677788888888899999999999999999984 33322221 2234456789999
Q ss_pred CEEEEEeCCCcEEEEecCCCC-----ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 378 NLVFSGSADRNICLWRREESG-----AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 378 ~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
++|++++..--|++|.+--.. ....+..+.||...|..++|+++.. .++|.+.||+++|||+
T Consensus 241 RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-------------r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 241 RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-------------RAVTVSKDGKWRIWDT 307 (420)
T ss_pred cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-------------eeEEEecCCcEEEeec
Confidence 999999999999999874321 1234567889999999999999998 7999999999999998
Q ss_pred CC
Q 012007 453 SE 454 (473)
Q Consensus 453 ~~ 454 (473)
.-
T Consensus 308 dV 309 (420)
T KOG2096|consen 308 DV 309 (420)
T ss_pred cc
Confidence 74
No 158
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=175.30 Aligned_cols=269 Identities=15% Similarity=0.244 Sum_probs=205.3
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccc
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSL 204 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 204 (473)
.++.|||..|+.+..| .+.|||.. ..+.++++|...|.|++|+.||+.+++|+.|+.|.+|.-.-..
T Consensus 18 ~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---------- 86 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---------- 86 (1081)
T ss_pred eEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc----------
Confidence 3667888877766654 78999976 5678999999999999999999999999999999999864332
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEE
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~ 284 (473)
.+...|.+.|.|+.|+|-...|++++- ...-+|...... +...+ ....+.+++
T Consensus 87 ------------------------~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~-V~K~k-ss~R~~~Cs 139 (1081)
T KOG1538|consen 87 ------------------------ILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKS-VSKHK-SSSRIICCS 139 (1081)
T ss_pred ------------------------eeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhh-HHhhh-hheeEEEee
Confidence 222349999999999999899999885 357788765432 22221 235678889
Q ss_pred EcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-----CEEEEeCCCCcEEEEecCCccc
Q 012007 285 AGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-----AVVYCGSSDGLVNFWECEKHLS 358 (473)
Q Consensus 285 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~ 358 (473)
|..|| +++.|-.+|+|.+-+-.. .....+....+.+++|.+++|+|.. ..+++.....++.+|.+.....
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~g----Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I 215 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKNG----EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI 215 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCCC----CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee
Confidence 99998 888999999999986432 2223344455678999999999953 5677888888888888765322
Q ss_pred ccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEE
Q 012007 359 HGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTV 438 (473)
Q Consensus 359 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l 438 (473)
-.....+......+..++|.+++.|+.|+.+.+|..+. ..+.++......|+.++..|+++ .+
T Consensus 216 gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G----vrLGTvg~~D~WIWtV~~~PNsQ-------------~v 278 (1081)
T KOG1538|consen 216 GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG----VRLGTVGEQDSWIWTVQAKPNSQ-------------YV 278 (1081)
T ss_pred cccccCCCCchhheeccCCcEEEEccCCCceEEEeecC----eEEeeccccceeEEEEEEccCCc-------------eE
Confidence 21222223333345557899999999999999998765 56677766778999999999999 89
Q ss_pred EEeeCCCcEEEEEcCC
Q 012007 439 YSGSLDKSVKVWRVSE 454 (473)
Q Consensus 439 ~s~s~Dg~v~iW~i~~ 454 (473)
+.|+.||+|..|++-.
T Consensus 279 ~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 279 VVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEEccCeeehhhhHH
Confidence 9999999999998753
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.1e-20 Score=170.10 Aligned_cols=267 Identities=13% Similarity=0.168 Sum_probs=195.3
Q ss_pred CcEEEeeCC--ccccccccCc--ccEEEEEEeCCCCEEEEE--eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCC
Q 012007 143 KNIRVWKNL--KEFSGFKSNS--GLVKAIIISGDSNKIFTG--HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVN 216 (473)
Q Consensus 143 g~i~vwd~~--~~~~~~~~h~--~~V~~l~~s~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (473)
..+++||.. .....+..|+ ..+..++|..... |+++ +.|..|++|.-..... ....+..
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~-~Vp~~~k------------- 76 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP-EVPRVRK------------- 76 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC-ccceeec-------------
Confidence 479999964 2223333332 3489999987663 4444 5578899997654411 1111000
Q ss_pred CcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEe
Q 012007 217 PKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS 295 (473)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~ 295 (473)
...+.-.|++......++++|+..++|+|||++...+.+.++.|...|+++.+.... +|++++
T Consensus 77 ----------------~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs 140 (673)
T KOG4378|consen 77 ----------------LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS 140 (673)
T ss_pred ----------------cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec
Confidence 022244555555566899999999999999999888888999999999999987554 999999
Q ss_pred CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE-EEEeCCCCcEEEEecCCcccccceeecCcceE--EE
Q 012007 296 ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV-VYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LC 372 (473)
Q Consensus 296 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~ 372 (473)
..|.|.|..+.+..+. .....+....|.-+.|++..+. |.+++.+|.|.+||.............|..+. .|
T Consensus 141 ~gGdiiih~~~t~~~t-----t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gic 215 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKT-----TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGIC 215 (673)
T ss_pred cCCcEEEEecccCccc-----cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcce
Confidence 9999999998754321 1112223455678999997654 56788999999999988777667777888776 56
Q ss_pred EEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 373 LAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 373 ~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
|+|. ..+|++.+.|..|.+||+... .....+. ...+.+.++|.++|. +|+.|...|.|..||
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~---~s~~~l~-y~~Plstvaf~~~G~-------------~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQ---ASTDRLT-YSHPLSTVAFSECGT-------------YLCAGNSKGELIAYD 278 (673)
T ss_pred ecCCccceEEEecccceEEEeecccc---cccceee-ecCCcceeeecCCce-------------EEEeecCCceEEEEe
Confidence 6665 678999999999999999873 3333332 356899999999998 899999999999999
Q ss_pred cCCCCCCccCC
Q 012007 452 VSEHAPDLKGL 462 (473)
Q Consensus 452 i~~~~~~~~~~ 462 (473)
+...+.+.+.+
T Consensus 279 ~R~~k~Pv~v~ 289 (673)
T KOG4378|consen 279 MRSTKAPVAVR 289 (673)
T ss_pred cccCCCCceEe
Confidence 99887766654
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1.8e-20 Score=173.65 Aligned_cols=254 Identities=17% Similarity=0.272 Sum_probs=180.9
Q ss_pred EEEeC---CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE
Q 012007 167 IIISG---DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243 (473)
Q Consensus 167 l~~s~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 243 (473)
..|++ ....|+.+..||.|.++|.......... .....+..|..+|..+.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee--------------------------~~lk~~~aH~nAifDl~w 108 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEE--------------------------RQLKKPLAHKNAIFDLKW 108 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhh--------------------------hhhcccccccceeEeecc
Confidence 45543 3467899999999999998765432111 111223359999999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCeeeEE--eecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCC--------
Q 012007 244 NAEQGLLYSGSWDKTLKVWRISDCKCLES--INAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKG-------- 311 (473)
Q Consensus 244 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~-------- 311 (473)
-|....|++++.|.++++||+++.+++.. +.+|...|.+++|.+.+ .|++|+.||.|.|||++.....
T Consensus 109 apge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~ 188 (720)
T KOG0321|consen 109 APGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNR 188 (720)
T ss_pred CCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhh
Confidence 99778999999999999999999988776 88999999999999987 8999999999999998743310
Q ss_pred ------c----ce---eeeeeeccCCccEEE---EEEccCCCEEEEeCC-CCcEEEEecCCccccc-------ceeecC-
Q 012007 312 ------T----KH---CLAQVLLKHENAVTA---LAVNQESAVVYCGSS-DGLVNFWECEKHLSHG-------GVLRGH- 366 (473)
Q Consensus 312 ------~----~~---~~~~~~~~~~~~v~~---l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~-------~~~~~~- 366 (473)
. .. .-......+...|.+ +.+..|...||+++. |+.|++||+++..... ..+..|
T Consensus 189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s 268 (720)
T KOG0321|consen 189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS 268 (720)
T ss_pred hhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc
Confidence 0 00 001112334445555 556678888888887 9999999998643221 111222
Q ss_pred --cceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCc--eeEEEEecCCCCCcccccCCCccEEEEE
Q 012007 367 --KMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGP--VKCLAVEEDRDHDHEYHQKGDQRWTVYS 440 (473)
Q Consensus 367 --~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~~~~~~~~~~~~~~l~s 440 (473)
...+.+|..| |.+|++.+.|+.|++|++.... ..++..+.++... -..-..+|++. ++++
T Consensus 269 krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s-~sP~~~~sg~~~~sf~vks~lSpd~~-------------~l~S 334 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS-ISPVAEFSGKLNSSFYVKSELSPDDC-------------SLLS 334 (720)
T ss_pred cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC-cCchhhccCcccceeeeeeecCCCCc-------------eEec
Confidence 2334555554 7998888889999999998732 3455555555321 12234678887 8999
Q ss_pred eeCCCcEEEEEcCCCCCCcc
Q 012007 441 GSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 441 ~s~Dg~v~iW~i~~~~~~~~ 460 (473)
|+.|...++|.+........
T Consensus 335 gSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred cCCCcceeeeeecCccCChh
Confidence 99999999999998765443
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=9.5e-22 Score=193.83 Aligned_cols=227 Identities=16% Similarity=0.255 Sum_probs=183.8
Q ss_pred EEEEeeCCCcEEEeeCCc--------cccccccCcccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 135 LLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~--------~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
+||.|.+||.|.+||..+ .+.....|++.|..+.|++.+. +||+|+.||.|.|||+...+.......
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~---- 157 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGS---- 157 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCC----
Confidence 699999999999998654 2456778999999999999765 999999999999999987554332210
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCC--ceeE
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDD--AINS 282 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~--~v~~ 282 (473)
....+.|.+++|+. ....|++++.+|.+.|||++..+.+..+..+.. .+..
T Consensus 158 --------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 158 --------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV 211 (1049)
T ss_pred --------------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence 01567899999987 456889999999999999999888877765544 4778
Q ss_pred EEEcCCC--EEEEEeCCC---cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCc
Q 012007 283 VVAGFDS--LVFTGSADG---TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 283 l~~~~~~--~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~ 356 (473)
+.|+|++ .+++++.|. .|.+||+| ......+++..|...|.++.|++.+ ++|++++.|+.|.+|+.+++
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR-----~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLR-----FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeeccc-----ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 9999998 677766654 59999998 4455677789999999999999965 89999999999999999997
Q ss_pred ccccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCC
Q 012007 357 LSHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 357 ~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~ 397 (473)
+.+. .+......+..+.|. ...+++++-||.|.||.+.+.
T Consensus 287 Evl~-~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 287 EVLG-ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred eEee-ecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 6554 444456677777665 558999999999999999864
No 162
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4e-20 Score=157.55 Aligned_cols=244 Identities=13% Similarity=0.148 Sum_probs=169.9
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE
Q 012007 164 VKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243 (473)
Q Consensus 164 V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 243 (473)
..|+.|++.|.+||+|+.||.|.|||+.+........ +|..+|++++|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls--------------------------------aH~~pi~sl~W 73 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS--------------------------------AHVRPITSLCW 73 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh--------------------------------ccccceeEEEe
Confidence 7899999999999999999999999998876332221 49999999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeec
Q 012007 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 244 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
+++|++|++++.|..|.+||+..|.+++.+. ...+|+...|+|.. ..++.-.+..-.+-++... ....+.....
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---~h~~Lp~d~d 149 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---KHSVLPKDDD 149 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC---ceeeccCCCc
Confidence 9999999999999999999999999999887 56789999999875 4444444444444444311 1111111111
Q ss_pred c-CCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc-ceE--EEEEecCCEEEEEeCCCcEEEEecCCC
Q 012007 322 K-HENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK-MAV--LCLAAAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 322 ~-~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
+ .+....+..|.+.|+++++|...|.+.++|..+..... .++-.. ..| .-++..|++|+.-+.|..|+.|++..-
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~va-s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVA-SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecchheeee-eeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence 1 11122334688999999999999999999998754332 222111 233 445667999999999999999998731
Q ss_pred ------CceeEEEEecC--CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 398 ------GAHSCLAVLTG--HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 398 ------~~~~~~~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+..++...+.. ..-.-.+++|+.++.. ++++...-..++||.-..+.
T Consensus 229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY------------v~a~s~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY------------VCAGSARAHALYIWEKSIGS 283 (405)
T ss_pred cccCccCCcChhHHHHHHHhhhhhhheeecCCccE------------EEeccccceeEEEEecCCcc
Confidence 11111111111 1223367788888772 44445556789999987764
No 163
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.5e-19 Score=145.40 Aligned_cols=278 Identities=16% Similarity=0.239 Sum_probs=190.2
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCC------------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNL------------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
++++.+++|++|..+|.|-+..+. ..+..+++|.++|+.++|..+ +|++|+ ||.|+-|.......
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~g-dG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGG-DGLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeecc-CceEEEeeehhhhh
Confidence 678889999999999999999643 223446889999999999844 788776 59999998865433
Q ss_pred eeEEe-ec--cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE
Q 012007 196 SVHKR-VG--SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272 (473)
Q Consensus 196 ~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 272 (473)
....+ .- ..|...+ .-.--.|+++.+.|..+-++.++.|+.++-||+++|+..++
T Consensus 94 s~~~K~lwe~~~P~~~~----------------------~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVD----------------------AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred hccchhhhhhcCccccC----------------------cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence 11100 00 0000000 00234688999999877777777899999999999999999
Q ss_pred eecCCCceeEEEE-cCCCEEEEEeCCCcEEEEeCcccCCCcceeee---eeeccC-CccEEEEEEccCCCEEEEeCCCCc
Q 012007 273 INAHDDAINSVVA-GFDSLVFTGSADGTVKVWRRELQGKGTKHCLA---QVLLKH-ENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 273 ~~~~~~~v~~l~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~-~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
+++|.+.|.++.- +..+.+++|+.||++++||.++++........ ..+..| ...|-+++.+ ..+|++|+ ...
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~ 228 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPK 228 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCc
Confidence 9999999999987 55569999999999999999865432111111 112222 2346666654 55787765 467
Q ss_pred EEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcc
Q 012007 348 VNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 427 (473)
+.+|.++..... .+ ..-...+..+.+....+++++..+.|.-|.+.. ..-.....-....+...|+..--.
T Consensus 229 lslwhLrsse~t-~v-fpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~G----vl~a~ip~~s~~c~s~s~~~~p~k--- 299 (325)
T KOG0649|consen 229 LSLWHLRSSEST-CV-FPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNG----VLQANIPVESTACYSASWQTSPIK--- 299 (325)
T ss_pred eeEEeccCCCce-EE-EecccceeEeeeecceEEEeccccceeeeeecc----EEEEeccCCccceeeecccCCceE---
Confidence 999999875443 22 234456667788899999999899999998876 333333333334555555543321
Q ss_pred cccCCCccEEEEEeeCCCcEEEEE
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+|-.++....+.|+.
T Consensus 300 ---------~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 300 ---------FISIAGFSNKLHILK 314 (325)
T ss_pred ---------EEEecccceeeeeee
Confidence 566677777777764
No 164
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4e-21 Score=172.63 Aligned_cols=298 Identities=18% Similarity=0.273 Sum_probs=222.9
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc---ccccccCcccEEEEEEeCC--CCEEEEEeCCCeEE
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAIIISGD--SNKIFTGHQDGKIR 186 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~---~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~ 186 (473)
.+...|..|.|.|..+.|+ |+.|++|+.|..|.+||.... +.-..+|...|..-.|-|. .+.+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4566788999999999997 999999999999999997643 3334568888888888774 46799999999999
Q ss_pred EEeCCCCCeee-EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEc
Q 012007 187 IWKVSRKNASV-HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 187 vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~ 264 (473)
+=.+....... ...+. .|.++|.-++..|+ -..|++++.|+.+.-+|+
T Consensus 213 ~s~i~~t~~~e~t~rl~------------------------------~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dl 262 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLA------------------------------PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDL 262 (559)
T ss_pred eeeeccccceecceecc------------------------------cccCccceeeecCCCCCcccccccccceeeeee
Confidence 87765443222 22221 39999999999995 457999999999999999
Q ss_pred CCCeeeEEe---ecCCC---ceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCC------cceeeeeeeccCCccEEEE
Q 012007 265 SDCKCLESI---NAHDD---AINSVVAGFDS--LVFTGSADGTVKVWRRELQGKG------TKHCLAQVLLKHENAVTAL 330 (473)
Q Consensus 265 ~~~~~~~~~---~~~~~---~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~v~~l 330 (473)
+.+.+...+ +.+.. ....++..|.+ .+++++.|..+++||.+.-.+. ...++..........|+++
T Consensus 263 r~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl 342 (559)
T KOG1334|consen 263 RQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL 342 (559)
T ss_pred ccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE
Confidence 877554333 23333 56777887775 8999999999999998753332 1111112222344669999
Q ss_pred EEccCCCEEEEeCCCCcEEEEecCC--c----------ccccceeecCcce--EEEEE---ecCCEEEEEeCCCcEEEEe
Q 012007 331 AVNQESAVVYCGSSDGLVNFWECEK--H----------LSHGGVLRGHKMA--VLCLA---AAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 331 ~~~~~~~~l~~~~~dg~i~iwd~~~--~----------~~~~~~~~~~~~~--v~~~~---~~~~~l~s~~~dg~i~iwd 393 (473)
+|+.++.-|+++..|-.|+++.-.. + ......++||... |-.+. |...|+++|+.-|.|.||+
T Consensus 343 ~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 343 VYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred EecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 9998887788888899999995432 1 1122347788753 34444 4468999999999999999
Q ss_pred cCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 394 REESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
-.+ .+.+..+.+-...|+||.-+|.-. +||++|.|..|+||.-...+.
T Consensus 423 K~t---~eii~~MegDr~VVNCLEpHP~~P-------------vLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 423 KKT---GEIIRFMEGDRHVVNCLEPHPHLP-------------VLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred cch---hHHHHHhhcccceEeccCCCCCCc-------------hhhccCCccceeeecCCcccc
Confidence 988 566777777777999999999988 999999999999998755443
No 165
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6.8e-20 Score=168.60 Aligned_cols=241 Identities=17% Similarity=0.222 Sum_probs=182.6
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
..+++|++.|.+|...|.|.+|++|+.||+|+||.+.++.++.... .
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~---------------------------------~ 440 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ---------------------------------F 440 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe---------------------------------e
Confidence 3478999999999999999999999999999999999998877665 4
Q ss_pred cCCeeEEEEcCCCC--EEEEEeCCCCEEEEEcCCC-------------------------------------eeeEEeec
Q 012007 235 YDAVSCLSLNAEQG--LLYSGSWDKTLKVWRISDC-------------------------------------KCLESINA 275 (473)
Q Consensus 235 ~~~v~~l~~~~~~~--~l~s~s~dg~v~vwd~~~~-------------------------------------~~~~~~~~ 275 (473)
.+.|.|++|+|.+. .||++-. ..+.|.+..-| .-++..-.
T Consensus 441 d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~ 519 (733)
T KOG0650|consen 441 DSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIK 519 (733)
T ss_pred cceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEe
Confidence 45788999988544 4444433 33444432111 01223335
Q ss_pred CCCceeEEEEcCCC-EEEEEeCC---CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 276 HDDAINSVVAGFDS-LVFTGSAD---GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 276 ~~~~v~~l~~~~~~-~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
|...|..+.|+..| +|++...+ ..|.|.++.. ......+....+.|.++.|+|...+|++++. ..|+||
T Consensus 520 ~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK------~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiY 592 (733)
T KOG0650|consen 520 HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK------RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIY 592 (733)
T ss_pred cCCccceeeeecCCceEEEeccCCCcceEEEEeccc------ccccCchhhcCCceeEEEecCCCceEEEEec-cceEEE
Confidence 77889999999888 77776654 4688888852 2222445556788999999999988888765 679999
Q ss_pred ecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccc
Q 012007 352 ECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYH 429 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~ 429 (473)
|+..+......+. ....+ +++.+.|.-|+.|+.|+.++.||+.-. .++.+.+.-|...|++++|++.-.
T Consensus 593 dL~kqelvKkL~t-g~kwiS~msihp~GDnli~gs~d~k~~WfDldls--skPyk~lr~H~~avr~Va~H~ryP------ 663 (733)
T KOG0650|consen 593 DLSKQELVKKLLT-GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS--SKPYKTLRLHEKAVRSVAFHKRYP------ 663 (733)
T ss_pred ehhHHHHHHHHhc-CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC--cchhHHhhhhhhhhhhhhhccccc------
Confidence 9987544443333 34444 455577999999999999999999864 467788889999999999999988
Q ss_pred cCCCccEEEEEeeCCCcEEEEEc
Q 012007 430 QKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 430 ~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
+|++|+.||++.|+--
T Consensus 664 -------Lfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 664 -------LFASGSDDGTVIVFHG 679 (733)
T ss_pred -------eeeeecCCCcEEEEee
Confidence 9999999999998854
No 166
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=1.5e-18 Score=146.37 Aligned_cols=269 Identities=16% Similarity=0.201 Sum_probs=189.8
Q ss_pred EEEEEec-----CCEEEEeeC----CCcEEEeeCCcc---cc--ccccCcccEEEEEEeCCC-----CEEEEEeCCCeEE
Q 012007 126 IYSLAAS-----GDLLYTGSD----SKNIRVWKNLKE---FS--GFKSNSGLVKAIIISGDS-----NKIFTGHQDGKIR 186 (473)
Q Consensus 126 V~~~~~~-----g~~l~tg~~----dg~i~vwd~~~~---~~--~~~~h~~~V~~l~~s~~~-----~~l~s~~~dg~i~ 186 (473)
++++.++ +.+||.|+. ...|.|-.+... +. .-..|.-+++.+.|.|+. .+|||++ | .+|
T Consensus 47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LR 124 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLR 124 (364)
T ss_pred eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-C-eEE
Confidence 4455554 447888864 345666543211 11 113588899999999986 3566643 3 799
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~ 265 (473)
+|.+...+........ +.. .....+..++++..|+. +-+++.+.+-|.+..|||++
T Consensus 125 lWri~~ee~~~~~~~~-L~~----------------------~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie 181 (364)
T KOG0290|consen 125 LWRIGDEESRVELQSV-LNN----------------------NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIE 181 (364)
T ss_pred EEeccCcCCceehhhh-hcc----------------------CcccccCCcccccccccCCcceeEeecccCeEEEEEEe
Confidence 9999753221111100 000 00112677899999998 77899999999999999999
Q ss_pred CCee---eEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEE
Q 012007 266 DCKC---LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVV 339 (473)
Q Consensus 266 ~~~~---~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l 339 (473)
++.. ...+-+|+..|..++|..++ .+++++.||.+|+||++..+. ..++..-.....+...++|++.. +++
T Consensus 182 ~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH---STIIYE~p~~~~pLlRLswnkqDpnym 258 (364)
T KOG0290|consen 182 TGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH---STIIYEDPSPSTPLLRLSWNKQDPNYM 258 (364)
T ss_pred eccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---ceEEecCCCCCCcceeeccCcCCchHH
Confidence 8733 55677899999999999865 899999999999999984321 11222222225678889999854 677
Q ss_pred EEeCCC-CcEEEEecCCcccccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCCCc---eeEEEEecCCCCc
Q 012007 340 YCGSSD-GLVNFWECEKHLSHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREESGA---HSCLAVLTGHTGP 412 (473)
Q Consensus 340 ~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~ 412 (473)
|+-..| ..|.|.|++........+.+|...|..+++. ...|++++.|..+.+||+..... ..++..+. -.+.
T Consensus 259 ATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~E 337 (364)
T KOG0290|consen 259 ATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGE 337 (364)
T ss_pred hhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccce
Confidence 765554 4799999998888888999999999888764 78999999999999999986322 12233333 4568
Q ss_pred eeEEEEecCCC
Q 012007 413 VKCLAVEEDRD 423 (473)
Q Consensus 413 V~~l~~~~~~~ 423 (473)
|+.|.|++...
T Consensus 338 VNqi~Ws~~~~ 348 (364)
T KOG0290|consen 338 VNQIQWSSSQP 348 (364)
T ss_pred eeeeeecccCC
Confidence 99999998766
No 167
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.84 E-value=4.8e-19 Score=175.48 Aligned_cols=298 Identities=17% Similarity=0.271 Sum_probs=200.3
Q ss_pred ccceeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCCcccc---------ccccCcccEEEEEEeCCCCEEEEEe
Q 012007 113 NGLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKEFS---------GFKSNSGLVKAIIISGDSNKIFTGH 180 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~~~~~---------~~~~h~~~V~~l~~s~~~~~l~s~~ 180 (473)
+.+++.|..|...|..++.+ +.+++||+.||+|++||..+... ++......+.++.+.+.++.+|.++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 44578899999998877643 67999999999999999654322 2333467899999999999999999
Q ss_pred CCCeEEEEeCCCCCeeeEEeec-cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCC-EEEEEeCCC
Q 012007 181 QDGKIRIWKVSRKNASVHKRVG-SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQG-LLYSGSWDK 257 (473)
Q Consensus 181 ~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~-~l~s~s~dg 257 (473)
.||.|++.+++..+........ -.+.. ......|.+-+|.. .+. .|+.+..-+
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~------------------------~~~g~vv~m~a~~~~~~S~~lvy~T~~~ 1173 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNL------------------------KKDGVVVSMHAFTAIVQSHVLVYATDLS 1173 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccc------------------------cCCCceEEeecccccccceeEEEEEecc
Confidence 9999999999864221111100 00000 00112233334433 233 677888889
Q ss_pred CEEEEEcCCCeeeEEee--cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc
Q 012007 258 TLKVWRISDCKCLESIN--AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 258 ~v~vwd~~~~~~~~~~~--~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
.|..||++....+..++ ...+.|++++.+|.+ +++.|+..|.+.+||++. .........++..+|+.+..+|
T Consensus 1174 ~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-----~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1174 RIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-----RVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred ceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec-----CceeecccCcccCCcceEEeec
Confidence 99999998876665554 345789999999987 899999999999999984 3334444556678888888877
Q ss_pred CC---CEEEEe-C-CCCcEEEEecCCcccccceeecCcc-------------------eE-EEEEecCCEEEEEeCCCcE
Q 012007 335 ES---AVVYCG-S-SDGLVNFWECEKHLSHGGVLRGHKM-------------------AV-LCLAAAGNLVFSGSADRNI 389 (473)
Q Consensus 335 ~~---~~l~~~-~-~dg~i~iwd~~~~~~~~~~~~~~~~-------------------~v-~~~~~~~~~l~s~~~dg~i 389 (473)
-. ...+++ + ..+.|.+|++.++............ .+ .++.--+.++.+|+.|..|
T Consensus 1249 ~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1249 TYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred cCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence 33 344444 3 5778999999876433222211010 11 1222236789999999999
Q ss_pred EEEecCCCCce--------------------------e-------------------EEEE--------ecCCCCceeEE
Q 012007 390 CLWRREESGAH--------------------------S-------------------CLAV--------LTGHTGPVKCL 416 (473)
Q Consensus 390 ~iwd~~~~~~~--------------------------~-------------------~~~~--------~~~h~~~V~~l 416 (473)
+.||....... + .... -..|..+|+++
T Consensus 1329 R~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdm 1408 (1431)
T KOG1240|consen 1329 RKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDM 1408 (1431)
T ss_pred eeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhh
Confidence 99997642110 0 0000 11466778888
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
++...... +|++++.||.|+||.
T Consensus 1409 a~~~~~q~------------llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1409 ATLKSEQP------------LLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhccCcc------------EEEEecCCCeeeecC
Confidence 87766543 899999999999994
No 168
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.2e-18 Score=170.24 Aligned_cols=293 Identities=19% Similarity=0.316 Sum_probs=196.7
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccC---cccEEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSN---SGLVKAIIISG--DSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h---~~~V~~l~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
+.-+.+-...++++...-.|+|||.. +.+..|..+ ...|+.+++-. |..+|++|+.||.||||+-........
T Consensus 1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~ 1148 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP 1148 (1387)
T ss_pred eeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCc
Confidence 33444556678888877899999966 334444433 46799998854 446899999999999997543321111
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec-CC
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA-HD 277 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~ 277 (473)
..+.......+. ..+..+.=.-+.|.....+|++++.-..|+|||....+++..+.. ..
T Consensus 1149 eLVTaw~~Ls~~--------------------~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1149 ELVTAWSSLSDQ--------------------LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred eeEEeecccccc--------------------CccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence 111111111000 001111124467877777777777788999999998888877764 34
Q ss_pred CceeEEEEcC--CCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCcc--EEEEEEccCCC-EEEEeCCCCcEEEEe
Q 012007 278 DAINSVVAGF--DSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA--VTALAVNQESA-VVYCGSSDGLVNFWE 352 (473)
Q Consensus 278 ~~v~~l~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~-~l~~~~~dg~i~iwd 352 (473)
..|+++.... .+.+++|..||.|++||.+... ....+.....|... |..+.+.+.|- .|++|+.||.|++||
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~---~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP---PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCC---ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEe
Confidence 4566665432 2499999999999999998653 23456677788877 99999999774 499999999999999
Q ss_pred cCCcc-cccceeecCc--c-eEEEE--EecCCEEEEEeCCCcEEEEecCCCCceeEEEE----ecCCCCceeEEEEecCC
Q 012007 353 CEKHL-SHGGVLRGHK--M-AVLCL--AAAGNLVFSGSADRNICLWRREESGAHSCLAV----LTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 353 ~~~~~-~~~~~~~~~~--~-~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~h~~~V~~l~~~~~~ 422 (473)
++... ........|. + ..+++ ..+...+|+|+. +.|+||++..... ..+.. +....+.+.|++|+|..
T Consensus 1286 lR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred cccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchh
Confidence 98731 1111112222 2 24444 456889999998 9999999976221 11111 11224568999999998
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
- ++|+|+.|.+|.||...++.
T Consensus 1364 ~-------------llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 L-------------LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred H-------------hhhhccCCceEEEeecCCcC
Confidence 7 89999999999999877654
No 169
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=1.9e-17 Score=155.50 Aligned_cols=272 Identities=13% Similarity=0.213 Sum_probs=173.0
Q ss_pred EEeeCCCcEEEeeCCc-----cccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCC-CCeeeEEeeccccccce
Q 012007 137 YTGSDSKNIRVWKNLK-----EFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSR-KNASVHKRVGSLPTFKD 209 (473)
Q Consensus 137 ~tg~~dg~i~vwd~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~ 209 (473)
++...|+.|.+|++.. .+..+. +.+....++++|++++|++++ .++.|.+|++.. +........
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-------- 76 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-------- 76 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--------
Confidence 3446789999999741 222332 346678899999999987765 478899999973 222111111
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCC-Ce---eeEEeecCCCceeEEE
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISD-CK---CLESINAHDDAINSVV 284 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~-~~---~~~~~~~~~~~v~~l~ 284 (473)
........++|+|++++|++++. ++.|.+|++.+ +. .+..+. +.....+++
T Consensus 77 -----------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~ 132 (330)
T PRK11028 77 -----------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSAN 132 (330)
T ss_pred -----------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeE
Confidence 02234567999999999998874 78999999964 32 222222 223456778
Q ss_pred EcCCC-EE-EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CCcEEEEecCCc--c-c
Q 012007 285 AGFDS-LV-FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DGLVNFWECEKH--L-S 358 (473)
Q Consensus 285 ~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~--~-~ 358 (473)
++|++ ++ ++...++.|.+||+...+....................++|+|++++++++.. ++.|.+||+... . .
T Consensus 133 ~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 133 IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 89987 44 45566799999999742211100000001112344678999999999988876 899999999731 1 1
Q ss_pred ccceeecC------c--ceEEEEEecCCEEEEEeC-CCcEEEEecCCCC-ceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 359 HGGVLRGH------K--MAVLCLAAAGNLVFSGSA-DRNICLWRREESG-AHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 359 ~~~~~~~~------~--~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
....+..+ . ..-..+++++++|+++.. ++.|.+|++...+ ....+..... ......++|+|+++
T Consensus 213 ~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~----- 286 (330)
T PRK11028 213 CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGK----- 286 (330)
T ss_pred EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCC-----
Confidence 11111111 1 112557789999998854 7899999996532 2233333322 12456899999998
Q ss_pred ccCCCccEEEEE-eeCCCcEEEEEcCCC
Q 012007 429 HQKGDQRWTVYS-GSLDKSVKVWRVSEH 455 (473)
Q Consensus 429 ~~~~~~~~~l~s-~s~Dg~v~iW~i~~~ 455 (473)
+|++ ...+++|.+|++...
T Consensus 287 --------~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 287 --------YLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred --------EEEEEEccCCcEEEEEEcCC
Confidence 4554 445999999998643
No 170
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=2.4e-19 Score=160.10 Aligned_cols=203 Identities=16% Similarity=0.188 Sum_probs=165.1
Q ss_pred ccCCeeEEEEcCCC--CEEEEEeCCCCEEEEEcCCC----eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeC
Q 012007 234 HYDAVSCLSLNAEQ--GLLYSGSWDKTLKVWRISDC----KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRR 305 (473)
Q Consensus 234 ~~~~v~~l~~~~~~--~~l~s~s~dg~v~vwd~~~~----~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~ 305 (473)
+...|++++|+|.. +++++|...|.|-+||+.+. ..+..+..|..+|.++.|+|.+ .+++.+.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 88999999999954 58899999999999999532 2356677899999999999987 8999999999999999
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec---CCEEEE
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA---GNLVFS 382 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s 382 (473)
+... ...+.........+..+.|+.+...++.+..=|...+||+++.......+.-|...|..++.+ ..+|++
T Consensus 265 ~~~i----~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT 340 (498)
T KOG4328|consen 265 EGNI----SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLAT 340 (498)
T ss_pred cchh----hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheee
Confidence 7321 122223333456677888888888888888888999999998777666777788888888765 679999
Q ss_pred EeCCCcEEEEecCCCCcee-EEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 383 GSADRNICLWRREESGAHS-CLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 383 ~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
++.|++.+|||++...... ++-....|...|.+..|+|.+. .|+|.+.|..|+|||..
T Consensus 341 ~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g-------------tl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 341 ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG-------------TLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC-------------ceEeeccCCceEEeecc
Confidence 9999999999998744333 3455567999999999999988 69999999999999985
No 171
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=6.3e-19 Score=151.16 Aligned_cols=258 Identities=14% Similarity=0.236 Sum_probs=188.4
Q ss_pred cccCcccEEEEEEeC-----CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 157 FKSNSGLVKAIIISG-----DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
...|+.+|..++|++ +-..+++.|.+ .+.+|+...............+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~-------------------------- 86 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADE-------------------------- 86 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCC--------------------------
Confidence 345888999999974 22456666655 7888887654422222111111
Q ss_pred eeccCCeeEEEEcCC----CCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeC
Q 012007 232 IRHYDAVSCLSLNAE----QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRR 305 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~ 305 (473)
.|......++|+-+ ..+|++|+.-|.|+|.|+.++++...+.+|...|+.|.+.|+. ++++++.|..|++|++
T Consensus 87 -d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 87 -DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred -CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 15556666667542 4689999999999999999999999999999999999999997 9999999999999999
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc-------------------------
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG------------------------- 360 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------------- 360 (473)
+.. .-.....-..+|...|.++.|+++|.+|++++.|..|++|++.......
T Consensus 166 ~~~---~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 166 QTD---VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred cCC---eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 732 2222334567899999999999999999999999999999987311000
Q ss_pred --ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCC-C----------CceeEEEEecCCCCceeEEEEe--cCCCCC
Q 012007 361 --GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREE-S----------GAHSCLAVLTGHTGPVKCLAVE--EDRDHD 425 (473)
Q Consensus 361 --~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~-~----------~~~~~~~~~~~h~~~V~~l~~~--~~~~~~ 425 (473)
....-|...|-|+.+-|+++++=+-++.|..|..-. . .....+..+.-....|.-|.|. +-++
T Consensus 243 ~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-- 320 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-- 320 (385)
T ss_pred cccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH--
Confidence 012235566666667799999999999999998721 1 1122344444455566666554 4455
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+||.|...|.|.+||+...++.
T Consensus 321 -----------~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 321 -----------MLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred -----------HHhhccCCCcEEEEECCCCCCc
Confidence 8999999999999999988774
No 172
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.7e-19 Score=157.42 Aligned_cols=244 Identities=13% Similarity=0.233 Sum_probs=187.0
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
.+.|++|.|+|....|++|+.||.++||.++.........+. -...+|.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~------------------------------l~~fPi~~ 262 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH------------------------------LEKFPIQK 262 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee------------------------------eccCccce
Confidence 478999999999999999999999999999865432211110 04568999
Q ss_pred EEEcCCCC-EEEEEeCCCCEEEEEcCCCeeeE--EeecCC-CceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCccee
Q 012007 241 LSLNAEQG-LLYSGSWDKTLKVWRISDCKCLE--SINAHD-DAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 241 l~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~-~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
.+|.|+|. .+++++....++.||+.+.+... .+.++. ..+....+++++ +|+..+..|.|.+....+..
T Consensus 263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e------ 336 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE------ 336 (514)
T ss_pred eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh------
Confidence 99999999 89999999999999998876533 233333 345666777877 89999999999999875332
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec--CcceEEEEEecCCEEEEEeCCCcEEEEe
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG--HKMAVLCLAAAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~~~dg~i~iwd 393 (473)
.......++.|..++|+.+++.|++++.+|.|.+||++........... -.+..+|.+.++.|||+|+..|.|.|||
T Consensus 337 -li~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 337 -LITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred -hhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence 1223345688999999999999999999999999999986444333222 1234567778999999999999999999
Q ss_pred cCC---CCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee--CCCcEEEEEcCC
Q 012007 394 REE---SGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS--LDKSVKVWRVSE 454 (473)
Q Consensus 394 ~~~---~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s--~Dg~v~iW~i~~ 454 (473)
.++ ....+++..+..-...|++|+|+++.+ +||.+| .+..+|+=-+.+
T Consensus 416 ~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-------------iLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 416 GNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-------------ILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred cchhhccCCCCchhhhhhhheeeeeeeeCcchh-------------hhhhhhhccccceEEEeccc
Confidence 764 234567777777788999999999998 666665 466788877654
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=4.2e-19 Score=155.71 Aligned_cols=206 Identities=18% Similarity=0.303 Sum_probs=160.0
Q ss_pred eeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCC---------ccccccccCcccEEEEEEeCCC-CEEEEEeCC
Q 012007 116 IGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL---------KEFSGFKSNSGLVKAIIISGDS-NKIFTGHQD 182 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~---------~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~d 182 (473)
.-.+.||.+.|+.+.|+ ...||+|++|.+|.||+.. +.+..+.+|...|.-++|+|.. +.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 33567899999998875 6799999999999999743 4566789999999999999964 689999999
Q ss_pred CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEE
Q 012007 183 GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262 (473)
Q Consensus 183 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vw 262 (473)
.+|.+|++.+++..... .|.+.|.++.|+.+|.+|++.+.|..|+||
T Consensus 154 n~v~iWnv~tgeali~l---------------------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~ 200 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITL---------------------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVI 200 (472)
T ss_pred ceEEEEeccCCceeeec---------------------------------CCCCeEEEEEeccCCceeeeecccceeEEE
Confidence 99999999998754433 399999999999999999999999999999
Q ss_pred EcCCCeeeEEeecCCCce-eEEEEcCCCEEEEEe----CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCC
Q 012007 263 RISDCKCLESINAHDDAI-NSVVAGFDSLVFTGS----ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337 (473)
Q Consensus 263 d~~~~~~~~~~~~~~~~v-~~l~~~~~~~l~s~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 337 (473)
|.++++.+.+-.+|.+.- ..+.|..++.+++.+ .+..+-+||...-... .........+.|.---|.+|..
T Consensus 201 dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP----~~~~elDtSnGvl~PFyD~dt~ 276 (472)
T KOG0303|consen 201 DPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP----IALQELDTSNGVLLPFYDPDTS 276 (472)
T ss_pred cCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc----ceeEEeccCCceEEeeecCCCC
Confidence 999999999888887632 233444555555544 3778999998643221 2222333445566666788877
Q ss_pred EEE-EeCCCCcEEEEecCCccc
Q 012007 338 VVY-CGSSDGLVNFWECEKHLS 358 (473)
Q Consensus 338 ~l~-~~~~dg~i~iwd~~~~~~ 358 (473)
+++ +|-.|+.|+.|.+.....
T Consensus 277 ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 277 IVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred EEEEEecCCcceEEEEecCCCc
Confidence 665 556799999999876543
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1e-16 Score=155.87 Aligned_cols=287 Identities=30% Similarity=0.515 Sum_probs=213.5
Q ss_pred eeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc---ccccccCc-ccEEEEEE-eCCCC-EEEEEeC-CCeEEEE
Q 012007 118 SIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE---FSGFKSNS-GLVKAIII-SGDSN-KIFTGHQ-DGKIRIW 188 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~---~~~~~~h~-~~V~~l~~-s~~~~-~l~s~~~-dg~i~vw 188 (473)
.+..|...|.++.++ +..++.++.|+.+.+|+.... ...+..+. ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456788888887765 778999999999999996633 45555544 37777777 78887 5555445 9999999
Q ss_pred eCCC-CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCC
Q 012007 189 KVSR-KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISD 266 (473)
Q Consensus 189 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~ 266 (473)
+... ..... ....|...|..++|+|++..+++++. |+.+++|++..
T Consensus 140 ~~~~~~~~~~--------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 140 DLSTPGKLIR--------------------------------TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred EecCCCeEEE--------------------------------EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence 9987 22211 11248899999999999998888885 99999999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC
Q 012007 267 CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
+..+..+..|...|.++.+.+++ .+++++.|+.|++||... .......+..|.... ...|++++.++++++.
T Consensus 188 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 261 (466)
T COG2319 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST-----GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS 261 (466)
T ss_pred CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC-----CcEEeeecCCCCcce-eEeECCCCCEEEEecC
Confidence 88999999999999999999887 344449999999997752 111211566677665 4489999989999999
Q ss_pred CCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 345 DGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
|+.+++|+............+|...+.++.+ ++..+++++.|+.+.+|+........... ...|...|..+.| ...
T Consensus 262 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 339 (466)
T COG2319 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSF-SPD 339 (466)
T ss_pred CCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEE-CCC
Confidence 9999999998655422233567777776655 46888889999999999888742222222 3478778999999 532
Q ss_pred -CCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 423 -DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 423 -~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.. ++..+..|+.+.+|++....
T Consensus 340 ~~~------------~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 340 GSL------------LVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCE------------EEEeecCCCcEEeeecCCCc
Confidence 31 34444688999999998876
No 175
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-17 Score=161.17 Aligned_cols=282 Identities=16% Similarity=0.254 Sum_probs=205.4
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
+.+++++++++|+|..||.|.+|... .....+.-|...|.+++|+++|.+|++||..|.+.+|.+++++.....
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLP 289 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLP 289 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccc
Confidence 45667789999999999999999533 234556779999999999999999999999999999999998733222
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec----
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA---- 275 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---- 275 (473)
+ -.+.|..+.++||+.+.+....|..|.+....+......+.+
T Consensus 290 R---------------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~ 336 (792)
T KOG1963|consen 290 R---------------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP 336 (792)
T ss_pred c---------------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCC
Confidence 2 567899999999999999999999999998866555444432
Q ss_pred -------CCCceeEEEEcC-CCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec------cCCccEEEEEEccCCCEEEE
Q 012007 276 -------HDDAINSVVAGF-DSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL------KHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 276 -------~~~~v~~l~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~l~~ 341 (473)
..+-.+.+.+.| .+.++..+..|.|.+||+.......+.. +.... .+.-.+++++.+-.|.++++
T Consensus 337 ~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~-v~~~n~~~~~~n~~v~itav~~~~~gs~maT 415 (792)
T KOG1963|consen 337 TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ-VCDENYSDGDVNIQVGITAVARSRFGSWMAT 415 (792)
T ss_pred CccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE-EEeecccCCcceeEEeeeeehhhccceEEEE
Confidence 133456677777 4578888999999999987543221111 11111 22345677888888988887
Q ss_pred eC--------CCC--cEEEEecCCcc----cccceeecCcceEE--EEEe--cCCEEEEEeCCCcEEEEecCC-------
Q 012007 342 GS--------SDG--LVNFWECEKHL----SHGGVLRGHKMAVL--CLAA--AGNLVFSGSADRNICLWRREE------- 396 (473)
Q Consensus 342 ~~--------~dg--~i~iwd~~~~~----~~~~~~~~~~~~v~--~~~~--~~~~l~s~~~dg~i~iwd~~~------- 396 (473)
.- .|| .+++|-..... ....+...|..... ++.. .....++++.||.++||-+..
T Consensus 416 ~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~ 495 (792)
T KOG1963|consen 416 LEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKK 495 (792)
T ss_pred eeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcC
Confidence 53 233 46788654321 22234456766543 3332 234899999999999998832
Q ss_pred CCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 397 SGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 397 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
...+.|...-..|..++++++|+.||. +++.+.|++|.+||..+.
T Consensus 496 ~s~W~c~~i~sy~k~~i~a~~fs~dGs--------------lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 496 SSNWTCKAIGSYHKTPITALCFSQDGS--------------LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ccceEEeeeeccccCcccchhhcCCCc--------------EEEEecCCEEEEecCCCh
Confidence 123566666556899999999999997 777788999999999884
No 176
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=1.3e-17 Score=142.75 Aligned_cols=205 Identities=14% Similarity=0.163 Sum_probs=161.5
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeCC-----ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC-CCC
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS-RKN 194 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~-----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~-~~~ 194 (473)
.++|+|.+++ +..+|++.....|.||... +...++..|...|++|+|+|..+.|++|+.|..-+||... .+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 4678887775 6789999999999999643 5678899999999999999999999999999999999983 333
Q ss_pred eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee----
Q 012007 195 ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL---- 270 (473)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~---- 270 (473)
-.. ...++.+..+.+++.|+|.++.|++|+.-..|.||-++...--
T Consensus 90 Wkp------------------------------tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK 139 (361)
T KOG1523|consen 90 WKP------------------------------TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK 139 (361)
T ss_pred ecc------------------------------ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence 221 1233358999999999999999999999999999988654322
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCC------------CcceeeeeeeccCCccEEEEEEccCCC
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK------------GTKHCLAQVLLKHENAVTALAVNQESA 337 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~~~~v~~l~~~~~~~ 337 (473)
+.-+.+...|.++.|+|++ ++++|+.|+..+++..-..+. .....+........+.|..+.|+|+|.
T Consensus 140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 2234567889999999999 888999999999996532111 111122233335678899999999999
Q ss_pred EEEEeCCCCcEEEEecCCcc
Q 012007 338 VVYCGSSDGLVNFWECEKHL 357 (473)
Q Consensus 338 ~l~~~~~dg~i~iwd~~~~~ 357 (473)
.|+-.+.|+.+.+-|.....
T Consensus 220 ~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 220 RLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred EeeEecCCCceEEeecCCCc
Confidence 99999999999999987654
No 177
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.6e-18 Score=158.14 Aligned_cols=218 Identities=15% Similarity=0.215 Sum_probs=152.6
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--cccc-ccccCcccEEEEEEeCC--CCEEEEEeCCCeEE
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFS-GFKSNSGLVKAIIISGD--SNKIFTGHQDGKIR 186 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~-~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~ 186 (473)
++-..|.||+|.|.|+.|+ |.+|++|++|-.+.|||.. +.+. .-.+|.+.|.++.|-|. .+.+++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 4567889999999999986 9999999999999999965 3333 34679999999999884 56899999999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEEcC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~~ 265 (473)
++|+...+....-.- .......+..|.+.|..|+-.|++ ..+.++++||+|+-+|++
T Consensus 121 lfdl~~~~~~~~d~~----------------------~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHG----------------------MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred EEecccccccccccC----------------------ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence 999986332110000 000112233499999999999988 789999999999999997
Q ss_pred CCee-------e---EEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCC-------cc------eeeeeee
Q 012007 266 DCKC-------L---ESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKG-------TK------HCLAQVL 320 (473)
Q Consensus 266 ~~~~-------~---~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~-------~~------~~~~~~~ 320 (473)
.... . ..+....-...|+.++|.. +|++|+.|-..++||.+...+. .. .+.....
T Consensus 179 Eph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~ 258 (758)
T KOG1310|consen 179 EPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS 258 (758)
T ss_pred CCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec
Confidence 6311 1 1111122346788888876 8999999999999995421110 00 0111111
Q ss_pred ccCC-----------ccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 321 LKHE-----------NAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 321 ~~~~-----------~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
.+|- ..++-+.|+|+|.-|++.-..-.|+++|+
T Consensus 259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred CccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence 1221 12567889999987777666667888875
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3.8e-19 Score=162.89 Aligned_cols=263 Identities=19% Similarity=0.289 Sum_probs=181.3
Q ss_pred eeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC----------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeE
Q 012007 118 SIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKI 185 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~----------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 185 (473)
++..|...|.++.+. ...|++|+.||+|++|++. +.+.+|.+|.++|.|+++.+++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 677788888877764 6689999999999999872 3466799999999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
+.|++.......... -...-.....||++.|+.+++++....|++++.||+|++|+..
T Consensus 369 ~~w~~p~n~dp~ds~----------------------dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSY----------------------DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred eeeccCCCCCccccc----------------------CcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence 999876221110000 0001123445799999999999999999999999999999987
Q ss_pred CCeeeEEeecC--CCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeee----eeeccCCccEEEEEEccCCC
Q 012007 266 DCKCLESINAH--DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLA----QVLLKHENAVTALAVNQESA 337 (473)
Q Consensus 266 ~~~~~~~~~~~--~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~v~~l~~~~~~~ 337 (473)
...+ ..+... .+.-..+.+-... ..++...-+.--+++.+... ...+. .........+..+.++|...
T Consensus 427 ~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s---~~~~~~s~~~~~~~~~~~in~vVs~~~~~ 502 (577)
T KOG0642|consen 427 EESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS---DLLIFESSASPGPRRYPQINKVVSHPTAD 502 (577)
T ss_pred CcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhh---heeeccccCCCcccccCccceEEecCCCC
Confidence 6655 333221 1222334332222 22222222222233332111 00000 00111224577888999999
Q ss_pred EEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC
Q 012007 338 VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT 410 (473)
Q Consensus 338 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 410 (473)
+.+++..|+.|+++|..++... .....|...+.+++ ++|-+|++++.|+.+++|.+.. ..++.....|.
T Consensus 503 ~~~~~hed~~Ir~~dn~~~~~l-~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~---k~~~~es~~~r 573 (577)
T KOG0642|consen 503 ITFTAHEDRSIRFFDNKTGKIL-HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV---KTCVLESTAHR 573 (577)
T ss_pred eeEecccCCceecccccccccc-hheeeccceecceeecCCCceEEeecCCceeehhhccc---hheeecccccc
Confidence 9999999999999999886544 45567888887766 5689999999999999999977 45665555553
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=2.8e-19 Score=163.74 Aligned_cols=263 Identities=19% Similarity=0.331 Sum_probs=180.9
Q ss_pred ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
++..|...|++++|.+-...|++|+.||.|++|+++.........+ .....+.+|.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~------------------------epi~tfraH~ 344 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDV------------------------EPILTFRAHE 344 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccce------------------------eeeEEEeccc
Confidence 5667889999999999999999999999999999943211110100 1123344699
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC----------eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEe
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC----------KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWR 304 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~----------~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd 304 (473)
++|.|+++.+++..+++|+-||+|+.|++... .....+.+|.+.|+.++++... .|++++.||+++.|+
T Consensus 345 gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 345 GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence 99999999999999999999999999966421 2345678999999999998876 899999999999999
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccccceeec---------CcceEEEEE
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSHGGVLRG---------HKMAVLCLA 374 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~v~~~~ 374 (473)
...... +.......| +.-+++.+-... ...++...-+.-.+++.+...... ++.. .........
T Consensus 425 ~~~~~~----~~f~~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~-~~~s~~~~~~~~~~~in~vVs~ 498 (577)
T KOG0642|consen 425 PTEESP----CTFGEPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLL-IFESSASPGPRRYPQINKVVSH 498 (577)
T ss_pred cCCcCc----cccCCcccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhhee-eccccCCCcccccCccceEEec
Confidence 753221 111111122 223444443322 122222222222333332211110 1110 111112223
Q ss_pred ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 375 AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 375 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+.+.+.+++..|+.|+++|..+ ...+.....|...++++++.|++. +|++++.||.|++|++..
T Consensus 499 ~~~~~~~~~hed~~Ir~~dn~~---~~~l~s~~a~~~svtslai~~ng~-------------~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 499 PTADITFTAHEDRSIRFFDNKT---GKILHSMVAHKDSVTSLAIDPNGP-------------YLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred CCCCeeEecccCCceecccccc---cccchheeeccceecceeecCCCc-------------eEEeecCCceeehhhccc
Confidence 5578999999999999999988 677888889999999999999999 899999999999999977
Q ss_pred CCCCccCCCC
Q 012007 455 HAPDLKGLHS 464 (473)
Q Consensus 455 ~~~~~~~~~~ 464 (473)
.....+...+
T Consensus 563 k~~~~es~~~ 572 (577)
T KOG0642|consen 563 KTCVLESTAH 572 (577)
T ss_pred hheeeccccc
Confidence 6655554443
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=7.8e-18 Score=144.19 Aligned_cols=257 Identities=19% Similarity=0.240 Sum_probs=178.5
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
-...+.|+|||..|++-+.|..+++|++-.......... .................|...+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~-------------------~~~~~~~~~~r~~eg~tvydy~ 111 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADG-------------------PLNFSKHLSYRYQEGETVYDYC 111 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCC-------------------ccccccceeEEeccCCEEEEEE
Confidence 356789999999999999999999999854321111000 0000011111122344555555
Q ss_pred Ec-------CCCCEEEEEeCCCCEEEEEcCCCeeeEEeec--CCC---ceeEEEEcCCCEEEEEeCCCcEEEEeCc-ccC
Q 012007 243 LN-------AEQGLLYSGSWDKTLKVWRISDCKCLESINA--HDD---AINSVVAGFDSLVFTGSADGTVKVWRRE-LQG 309 (473)
Q Consensus 243 ~~-------~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~---~v~~l~~~~~~~l~s~~~dg~i~vwd~~-~~~ 309 (473)
|- |+..++++.+.+.-|++||.-+|+....+.+ |.+ ...+++|+|||.-+.++....|+++|+. .+.
T Consensus 112 wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 112 WYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGR 191 (406)
T ss_pred eeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCC
Confidence 54 5778999999999999999999998877754 332 4568899999955556678999999993 322
Q ss_pred CCcceeee-eeeccCCccEEEEEEccC-CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeC
Q 012007 310 KGTKHCLA-QVLLKHENAVTALAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSA 385 (473)
Q Consensus 310 ~~~~~~~~-~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~ 385 (473)
........ .-..+..+-|.+++|+|. ...+++|+....+-||.-... .+...+.+|.+.|+.+. .+|+.|++|..
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaR 270 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGAR 270 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCeeccccc
Confidence 11111111 113344677899999995 468999999888888876653 44467779999987655 57999999874
Q ss_pred -CCcEEEEecCCCCceeEEEEecCCCC-ceeEEE--EecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 386 -DRNICLWRREESGAHSCLAVLTGHTG-PVKCLA--VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 386 -dg~i~iwd~~~~~~~~~~~~~~~h~~-~V~~l~--~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
|-.|..||++.. ..++..+..|.+ .=..|. ..|+++ +|++|+.||.|++||+..
T Consensus 271 k~dkIl~WDiR~~--~~pv~~L~rhv~~TNQRI~FDld~~~~-------------~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 271 KDDKILCWDIRYS--RDPVYALERHVGDTNQRILFDLDPKGE-------------ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CCCeEEEEeehhc--cchhhhhhhhccCccceEEEecCCCCc-------------eeeccCCCccEEEEecCC
Confidence 678999999874 456777777755 223344 446666 899999999999999987
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=1.9e-17 Score=145.36 Aligned_cols=214 Identities=17% Similarity=0.250 Sum_probs=158.7
Q ss_pred ccccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 152 KEFSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
+..-.+.+|+++|..++|+|- .+.||+|+.|.+|.||++-.+....... .....
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-------------------------epvv~ 126 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-------------------------EPVVE 126 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-------------------------cceEE
Confidence 345567899999999999994 4689999999999999997654322211 12244
Q ss_pred EeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCccc
Q 012007 231 KIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~ 308 (473)
+.+|...|.-++|+| -.+.|++++.|.+|.+||+.+++.+.++. |.+.|.++.|+.+| ++++.+.|..|+|||.+.+
T Consensus 127 L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~ 205 (472)
T KOG0303|consen 127 LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG 205 (472)
T ss_pred EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC
Confidence 557999999999999 45789999999999999999999999988 99999999999998 9999999999999999843
Q ss_pred CCCcceeeeeeeccCCcc-EEEEEEccCCCEEEEeC---CCCcEEEEecCCcccccce--eecCcceEE-EEEecCCEEE
Q 012007 309 GKGTKHCLAQVLLKHENA-VTALAVNQESAVVYCGS---SDGLVNFWECEKHLSHGGV--LRGHKMAVL-CLAAAGNLVF 381 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~--~~~~~~~v~-~~~~~~~~l~ 381 (473)
. ++.....|.+. -..+.|-.++.++-+|. ++..+.+||..+....... +....+..+ -+.++.++++
T Consensus 206 ~------~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivY 279 (472)
T KOG0303|consen 206 T------VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVY 279 (472)
T ss_pred c------EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEE
Confidence 3 33334556543 45566777888555553 4778999998764444322 222222222 2234555554
Q ss_pred -EEeCCCcEEEEecCCC
Q 012007 382 -SGSADRNICLWRREES 397 (473)
Q Consensus 382 -s~~~dg~i~iwd~~~~ 397 (473)
+|-.|+.|+.|.+...
T Consensus 280 l~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 280 LCGKGDSSIRYFEITNE 296 (472)
T ss_pred EEecCCcceEEEEecCC
Confidence 5567999999999874
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=1.2e-17 Score=140.97 Aligned_cols=206 Identities=19% Similarity=0.235 Sum_probs=157.8
Q ss_pred eccCCeeEEEEcCCC-----CEEEEEeCCCCEEEEEcCC--Cee--eEEe-----ecCCCceeEEEEcCCC--EEEEEeC
Q 012007 233 RHYDAVSCLSLNAEQ-----GLLYSGSWDKTLKVWRISD--CKC--LESI-----NAHDDAINSVVAGFDS--LVFTGSA 296 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~-----~~l~s~s~dg~v~vwd~~~--~~~--~~~~-----~~~~~~v~~l~~~~~~--~l~s~~~ 296 (473)
.|.-+++.+.|.|+. .+|++.+ ..+++|.+.. .+. ...+ ..+..++++..|+.-. ++.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 488899999999976 3566555 4799999863 221 1111 2356788999987654 8999999
Q ss_pred CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccccceeecC--cceEEEE
Q 012007 297 DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSHGGVLRGH--KMAVLCL 373 (473)
Q Consensus 297 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~ 373 (473)
|-+..|||++.+. .......+..|...|..++|..++ +++++.+.||.|++||++.......++... ..+.+.+
T Consensus 172 DTTCTiWdie~~~---~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 172 DTTCTIWDIETGV---SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL 248 (364)
T ss_pred cCeEEEEEEeecc---ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence 9999999998541 233456788999999999999865 688999999999999998743222222221 3455667
Q ss_pred Eec---CCEEEEEeCC-CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEE
Q 012007 374 AAA---GNLVFSGSAD-RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKV 449 (473)
Q Consensus 374 ~~~---~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~i 449 (473)
+++ .+++|+-..| ..|.|.|++.. ..++..+.+|.+.|++|+|.|.... .|+|+|+|..+.|
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P--~tpva~L~~H~a~VNgIaWaPhS~~------------hictaGDD~qali 314 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVP--CTPVARLRNHQASVNGIAWAPHSSS------------HICTAGDDCQALI 314 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCC--CcceehhhcCcccccceEecCCCCc------------eeeecCCcceEEE
Confidence 764 6788887665 46999999975 5788999999999999999999875 7999999999999
Q ss_pred EEcCCCCC
Q 012007 450 WRVSEHAP 457 (473)
Q Consensus 450 W~i~~~~~ 457 (473)
||+.....
T Consensus 315 WDl~q~~~ 322 (364)
T KOG0290|consen 315 WDLQQMPR 322 (364)
T ss_pred Eecccccc
Confidence 99987543
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=3e-17 Score=157.83 Aligned_cols=274 Identities=14% Similarity=0.140 Sum_probs=194.2
Q ss_pred CCcEEEeeCCcccc--ccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCc
Q 012007 142 SKNIRVWKNLKEFS--GFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK 218 (473)
Q Consensus 142 dg~i~vwd~~~~~~--~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (473)
++.+.||++..... ....-...|.|++|+|.. ++|+.|..+|.|.+||+..+.........
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls---------------- 284 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS---------------- 284 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc----------------
Confidence 34799999775421 122246789999999854 67888888999999999887643211110
Q ss_pred ceEEEeecceeeEeeccCCeeEEEEcCCC--CEEEEEeCCCCEEEEEcCCCee-e-----EEee------cCCCceeEEE
Q 012007 219 NYVEVRRNRSVLKIRHYDAVSCLSLNAEQ--GLLYSGSWDKTLKVWRISDCKC-L-----ESIN------AHDDAINSVV 284 (473)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~s~s~dg~v~vwd~~~~~~-~-----~~~~------~~~~~v~~l~ 284 (473)
.....|..+|..+.|..+. .-+++++.||.|..|+++.-.. . .... .....++++.
T Consensus 285 ----------~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~ 354 (555)
T KOG1587|consen 285 ----------ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLK 354 (555)
T ss_pred ----------cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEe
Confidence 1112399999999997744 4599999999999998864322 1 1111 1224678888
Q ss_pred EcCCC--EEEEEeCCCcEEEEeCcccCCC--cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc
Q 012007 285 AGFDS--LVFTGSADGTVKVWRRELQGKG--TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG 360 (473)
Q Consensus 285 ~~~~~--~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 360 (473)
|.+.. .++.|+.+|.|.--+....... ...........|.+.|+++.++|-+..++..+.|.+|+||...-...+.
T Consensus 355 F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl 434 (555)
T KOG1587|consen 355 FEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL 434 (555)
T ss_pred eccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc
Confidence 87765 8999999999987443321110 1112344567789999999999976544444449999999987434555
Q ss_pred ceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEE
Q 012007 361 GVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWT 437 (473)
Q Consensus 361 ~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~ 437 (473)
..+..+...+++++|+ ...|+++..||.|.+||+.... ..++.....+....+.+.|++.++ +
T Consensus 435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~-~~Pv~s~~~~~~~l~~~~~s~~g~-------------~ 500 (555)
T KOG1587|consen 435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD-EEPVLSQKVCSPALTRVRWSPNGK-------------L 500 (555)
T ss_pred hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc-cCCcccccccccccceeecCCCCc-------------E
Confidence 5666677778777776 5689999999999999998633 345555555567778889999888 8
Q ss_pred EEEeeCCCcEEEEEcCCC
Q 012007 438 VYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 438 l~s~s~Dg~v~iW~i~~~ 455 (473)
|+.|...|.+.+|++...
T Consensus 501 lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 501 LAVGDANGTTHILKLSES 518 (555)
T ss_pred EEEecCCCcEEEEEcCch
Confidence 999999999999999754
No 184
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=3.1e-16 Score=152.48 Aligned_cols=250 Identities=28% Similarity=0.495 Sum_probs=195.1
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-eeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN-ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
.....|...|.++.+.+.+..++.++.|+.+.+|+..... ........
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------------------------------- 107 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL------------------------------- 107 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEecc-------------------------------
Confidence 3566789999999999999999999999999999998775 21111110
Q ss_pred ccCCeeEEEE-cCCCC-EEEEEeC-CCCEEEEEcCC-CeeeEEeecCCCceeEEEEcCCC-EEEEEeC-CCcEEEEeCcc
Q 012007 234 HYDAVSCLSL-NAEQG-LLYSGSW-DKTLKVWRISD-CKCLESINAHDDAINSVVAGFDS-LVFTGSA-DGTVKVWRREL 307 (473)
Q Consensus 234 ~~~~v~~l~~-~~~~~-~l~s~s~-dg~v~vwd~~~-~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~-dg~i~vwd~~~ 307 (473)
+...+..+.+ .+++. .++..+. |+.+.+||... ......+..|...|..+.+++++ .+++++. |+.+++|++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred CCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence 1135666666 77777 5555444 99999999988 88888999999999999999998 6777775 99999999863
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEEEEecCCcccccceeecCcce-EEEEEecCCEEEEEeC
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMA-VLCLAAAGNLVFSGSA 385 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~s~~~ 385 (473)
......+..|...|.+++|+|++. ++++++.|+.|++||..........+.+|... +..+++++.++++++.
T Consensus 188 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
T COG2319 188 ------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSS 261 (466)
T ss_pred ------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecC
Confidence 234455666999999999999998 55555999999999887543333246666665 5577888889999999
Q ss_pred CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 386 DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
|+.+++|+...... .+..+.+|...|.++.|.|++. .+++++.|+.+++|++....
T Consensus 262 d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~-------------~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 262 DGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPDGK-------------LLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred CCcEEEeeecCCCc--EEEEEecCCccEEEEEECCCCC-------------EEEEeeCCCcEEEEEcCCCc
Confidence 99999999987433 2333478899999999999776 67779999999999887654
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=7.9e-18 Score=141.98 Aligned_cols=208 Identities=19% Similarity=0.270 Sum_probs=159.7
Q ss_pred eccCCeeEEEEcC-CCCEEEEEeCC-------CCEEEEEcCCC---------eeeEEee-cCCCceeEEEEcCCCEEEEE
Q 012007 233 RHYDAVSCLSLNA-EQGLLYSGSWD-------KTLKVWRISDC---------KCLESIN-AHDDAINSVVAGFDSLVFTG 294 (473)
Q Consensus 233 ~~~~~v~~l~~~~-~~~~l~s~s~d-------g~v~vwd~~~~---------~~~~~~~-~~~~~v~~l~~~~~~~l~s~ 294 (473)
.|.+.|..|+-+| +...|+++..+ ..+.||.+... +++..+. .+-+.|.|+.|.|++.-+.+
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 4788999999999 55666666542 24779988532 3344444 45568999999998844444
Q ss_pred eCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc--CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE
Q 012007 295 SADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ--ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 295 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
-.|..|.+|++....+.....+......+....++-+|+| +++.+++. .|+++..||+++..+...+...|...+..
T Consensus 141 m~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrd 219 (370)
T KOG1007|consen 141 MDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRD 219 (370)
T ss_pred eccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeee
Confidence 4599999999985543222222223334667788889998 67777665 58999999999988887888889888988
Q ss_pred EEecC---CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEE
Q 012007 373 LAAAG---NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKV 449 (473)
Q Consensus 373 ~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~i 449 (473)
+.++. .+|++|+.||.|+|||.+.. ..++..+.+|...|.++.|+|.... +|++||.|..|.+
T Consensus 220 lDfNpnkq~~lvt~gDdgyvriWD~R~t--k~pv~el~~HsHWvW~VRfn~~hdq------------LiLs~~SDs~V~L 285 (370)
T KOG1007|consen 220 LDFNPNKQHILVTCGDDGYVRIWDTRKT--KFPVQELPGHSHWVWAVRFNPEHDQ------------LILSGGSDSAVNL 285 (370)
T ss_pred ccCCCCceEEEEEcCCCccEEEEeccCC--CccccccCCCceEEEEEEecCccce------------EEEecCCCceeEE
Confidence 88763 47999999999999999874 5688999999999999999998764 8999999999999
Q ss_pred EEcCCC
Q 012007 450 WRVSEH 455 (473)
Q Consensus 450 W~i~~~ 455 (473)
|....-
T Consensus 286 sca~sv 291 (370)
T KOG1007|consen 286 SCASSV 291 (370)
T ss_pred Eecccc
Confidence 987653
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=1.9e-19 Score=171.59 Aligned_cols=252 Identities=21% Similarity=0.350 Sum_probs=198.7
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+.++.+.+|..+|+|+.|...|.++++|+.|..++||..++..+.....
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r------------------------------- 229 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR------------------------------- 229 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-------------------------------
Confidence 4466788999999999999999999999999999999988776543322
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCC
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
||...|+.++.+.+..++++++.|..|++|.+.++.++..+.+|.+.|++|+|+|-. +.+.||++++||.+....
T Consensus 230 -Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~- 304 (1113)
T KOG0644|consen 230 -GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPR- 304 (1113)
T ss_pred -CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccccccc-
Confidence 599999999999999999999999999999999999999999999999999999865 788999999999873211
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcce---EEEEEecCCEEEEEeCCCc
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMA---VLCLAAAGNLVFSGSADRN 388 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---v~~~~~~~~~l~s~~~dg~ 388 (473)
...+.-.......-+.++.|...+.-+++++.|+.-..|.+..... +... ++..+-...+.+++-.+-.
T Consensus 305 -~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~-------~~~~lif~t~ssd~~~~~~~ar~~~~ 376 (1113)
T KOG0644|consen 305 -IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW-------RSNLLIFVTRSSDLSSIVVTARNDHR 376 (1113)
T ss_pred -ccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh-------hccceEEEeccccccccceeeeeeeE
Confidence 1111111112235567778888888899999999998887653211 1111 1111111367777888889
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
+++|++.+ +.++..+.+|...+..+.++|-+.. +..+++.||...|||+-.+.+.....
T Consensus 377 ~~vwnl~~---g~l~H~l~ghsd~~yvLd~Hpfn~r------------i~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 377 LCVWNLYT---GQLLHNLMGHSDEVYVLDVHPFNPR------------IAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred eeeeeccc---chhhhhhcccccceeeeeecCCCcH------------hhhhccCCCceEeeecccCCcceeee
Confidence 99999998 5778888999999999999998874 67899999999999999887654433
No 187
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=9e-19 Score=167.06 Aligned_cols=279 Identities=18% Similarity=0.270 Sum_probs=202.2
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
+.+..|.+|-..|+|..+| |.++++|++|..|+||... .++....||.+.|+.++.+.+..++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 4677889999999999998 8999999999999999754 67889999999999999999999999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
+..+..+... .+|+++|++|+|+|-. +.+.||++++||.+ ...
T Consensus 261 l~~~~pvsvL--------------------------------rghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~ 303 (1113)
T KOG0644|consen 261 LPDGAPVSVL--------------------------------RGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEP 303 (1113)
T ss_pred cCCCchHHHH--------------------------------hccccceeeeccCccc----cCCCCCceEecccc-ccc
Confidence 9887644322 3699999999999944 77889999999987 121
Q ss_pred eEEe----ec-CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEe
Q 012007 270 LESI----NA-HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCG 342 (473)
Q Consensus 270 ~~~~----~~-~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~ 342 (473)
+... +. ..+.+..+.+...+ .+++++.|+.-..|..... ..+...+.-+.++.+ ..+.+++
T Consensus 304 ~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l------------~~~~~~lif~t~ssd~~~~~~~a 371 (1113)
T KOG0644|consen 304 RIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL------------AWRSNLLIFVTRSSDLSSIVVTA 371 (1113)
T ss_pred cccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHh------------hhhccceEEEeccccccccceee
Confidence 1111 11 22344455554444 7899999999999876421 111222222222212 2456666
Q ss_pred CCCCcEEEEecCCcccccceeecCcceEEEEEe---cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe
Q 012007 343 SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA---AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE 419 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~ 419 (473)
-.+-.+.+|++.++.. ...+.+|...+..+.. +.....+++.||.+.|||+-.+-+.+... .+| +.+..-+|+
T Consensus 372 r~~~~~~vwnl~~g~l-~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~--~gh-~kl~d~kFS 447 (1113)
T KOG0644|consen 372 RNDHRLCVWNLYTGQL-LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF--IGH-GKLVDGKFS 447 (1113)
T ss_pred eeeeEeeeeecccchh-hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee--ccc-ceeeccccC
Confidence 6777899999987643 3466677766665553 46677889999999999998743322222 454 567788999
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
++|. -++....-|.+.|.....++..
T Consensus 448 qdgt-------------s~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 448 QDGT-------------SIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCCc-------------eEecCCCCCceEEeccCCCccc
Confidence 9998 4666666778888877665543
No 188
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=1.1e-17 Score=155.08 Aligned_cols=245 Identities=17% Similarity=0.202 Sum_probs=175.3
Q ss_pred CCCEEEE--EeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCC
Q 012007 172 DSNKIFT--GHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQG 248 (473)
Q Consensus 172 ~~~~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~ 248 (473)
+..+++. ++..|.|-||++..........+..+ -....|+.+.|+| |..
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l----------------------------~Ngt~vtDl~WdPFD~~ 641 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL----------------------------FNGTLVTDLHWDPFDDE 641 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCccccccc----------------------------ccCceeeecccCCCChH
Confidence 4445554 45678999999976543222111110 1556799999999 778
Q ss_pred EEEEEeCCCCEEEEEcCCC-------eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 249 LLYSGSWDKTLKVWRISDC-------KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 249 ~l~s~s~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
.|++++.||.|++|.+..+ .+...+..|...|..+.|+|-. .|++++.|-+|++||+.... ....
T Consensus 642 rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~------~~~~ 715 (1012)
T KOG1445|consen 642 RLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK------LYSR 715 (1012)
T ss_pred HeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh------hhhe
Confidence 9999999999999998653 3456778999999999999864 89999999999999997432 4567
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee---ecCcceEEEEEecCCEEEEEeCCC----cEEEE
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL---RGHKMAVLCLAAAGNLVFSGSADR----NICLW 392 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~s~~~dg----~i~iw 392 (473)
+.+|.+.|..++|+|+|+.+++.+.||+|++|+.++.......- .+..+.-.-|..+|+++++.+.|. .|.+|
T Consensus 716 l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y 795 (1012)
T KOG1445|consen 716 LVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMY 795 (1012)
T ss_pred eccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhh
Confidence 88999999999999999999999999999999998765554332 234455567888999999888764 58889
Q ss_pred ecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 393 RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
|..+-. ...+.+ ..+...|.-- .-+.+.|...+|++|-.|..|.+|++-...+-+..+
T Consensus 796 ~Aq~l~-~~pl~t--------~~lDvaps~L---vP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl 853 (1012)
T KOG1445|consen 796 DAQTLD-LRPLYT--------QVLDVAPSPL---VPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPL 853 (1012)
T ss_pred hhhhcc-CCccee--------eeecccCccc---cccccCCCceEEEecCCCceEEEEEecCCCceeeec
Confidence 877621 112221 1122121100 001122333489999999999999998776655433
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.3e-17 Score=144.78 Aligned_cols=257 Identities=15% Similarity=0.199 Sum_probs=183.9
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
+.+.+|.+.|++|.|+.++++|++|+.|..+++|+++..-.....+ .+ .+..-.|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~K--PI-----------------------~~~~~~H 104 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPK--PI-----------------------GVMEHPH 104 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCC--Cc-----------------------eeccCcc
Confidence 4567899999999999999999999999999999986432111100 00 0001127
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec--CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA--HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
...|.|++|.....+|++|..+++|.+.|+++.+.+..+.. ..+.|..+..+|.. .|++.+.++.|.+||.+.....
T Consensus 105 ~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 105 RSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred ccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence 78999999999999999999999999999999998877752 23589999888865 8999999999999999854321
Q ss_pred cceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCccccccee---ecCcc-----eEEEEEecCCEEEE
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSHGGVL---RGHKM-----AVLCLAAAGNLVFS 382 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~-----~v~~~~~~~~~l~s 382 (473)
.. .............+.|+|.. .+|++.+..+-+.+||.+......... .+-.. --.-|+++|+.|++
T Consensus 185 ~~---~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms 261 (609)
T KOG4227|consen 185 IS---LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS 261 (609)
T ss_pred Cc---eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh
Confidence 11 11223344567888999965 678888888999999998654332211 11111 11345677888888
Q ss_pred EeCCCcEEEEecCCCCceeEEEEecCC-------CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 383 GSADRNICLWRREESGAHSCLAVLTGH-------TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 383 ~~~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
--....-.+||+.+. .|...-..| ...+.+++|..+. -+++|+.+-.|++|++...
T Consensus 262 iRR~~~P~~~D~~S~---R~~V~k~D~N~~GY~N~~T~KS~~F~~D~--------------~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 262 IRRGKCPLYFDFISQ---RCFVLKSDHNPNGYCNIKTIKSMTFIDDY--------------TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred hhccCCCEEeeeecc---cceeEeccCCCCcceeeeeeeeeeeecce--------------eeeccCcccceEEEecCCC
Confidence 776666778888762 222111122 2357888888776 4999999999999999754
Q ss_pred C
Q 012007 456 A 456 (473)
Q Consensus 456 ~ 456 (473)
.
T Consensus 325 ~ 325 (609)
T KOG4227|consen 325 N 325 (609)
T ss_pred c
Confidence 3
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=155.62 Aligned_cols=238 Identities=14% Similarity=0.198 Sum_probs=181.3
Q ss_pred ccceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 113 NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
+++..+|++|.+.|+|++++ |+.+|+|+.|..|.||+..-+-..-..|...|.|+.|+|-...|++|+-. ..-+|..
T Consensus 43 G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~ 121 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSP 121 (1081)
T ss_pred cccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence 46789999999999999975 99999999999999998653222233599999999999999999999875 4678987
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
+........ ....|.+++|..||.+|+.|-.+|+|.+-+- +++..
T Consensus 122 ~qK~V~K~k----------------------------------ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek 166 (1081)
T KOG1538|consen 122 EQKSVSKHK----------------------------------SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEK 166 (1081)
T ss_pred hhhhHHhhh----------------------------------hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcc
Confidence 765433221 3457889999999999999999999999864 44443
Q ss_pred EEee---cCCCceeEEEEcCCC------EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE
Q 012007 271 ESIN---AHDDAINSVVAGFDS------LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 271 ~~~~---~~~~~v~~l~~~~~~------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
..+. +...+|++++|+|.. .+++.....++.++.+.... +.....-.-...|+.+.++|.+++.
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-------Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-------IGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-------ecccccCCCCchhheeccCCcEEEE
Confidence 3333 467899999998863 78888888888888875211 1111222334578999999999999
Q ss_pred eCCCCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecC
Q 012007 342 GSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
|+.|+.+++|..+. ..+ ..+......| ..+.|++++++.|+.||+|..|++.
T Consensus 240 GGsdk~L~~fTR~G-vrL-GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 240 GGSDKQLSLFTRDG-VRL-GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCCceEEEeecC-eEE-eeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99999999997553 222 2333344455 4456899999999999999999865
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=9.3e-17 Score=155.47 Aligned_cols=235 Identities=12% Similarity=0.051 Sum_probs=162.7
Q ss_pred CCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCeeeEEeeccccccceeEeecCCC
Q 012007 142 SKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQD---GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNP 217 (473)
Q Consensus 142 dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (473)
+..|.+||.. .....+..|...+...+|+|||++|+.++.+ ..|++||+.+++......
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~----------------- 245 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS----------------- 245 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-----------------
Confidence 4689999865 3345566788889999999999999987654 369999998765322211
Q ss_pred cceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEE--EcCCCeeeEEeecCCCceeEEEEcCCC-EEE-
Q 012007 218 KNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVW--RISDCKCLESINAHDDAINSVVAGFDS-LVF- 292 (473)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vw--d~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~- 292 (473)
.......++|+|||+.|+.++ .+|.+.|| |+.+++ +..+..+...+....|+|++ .|+
T Consensus 246 ----------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f 308 (429)
T PRK01742 246 ----------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILF 308 (429)
T ss_pred ----------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEE
Confidence 112234689999999888765 67876555 665554 44555566778889999998 444
Q ss_pred EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE
Q 012007 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 293 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
+...+|...||++..... .. ..+ .+.. ....|+|+|++|+..+.++ +.+||+.++... .....+......
T Consensus 309 ~s~~~g~~~I~~~~~~~~--~~---~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-~lt~~~~~~~~~ 378 (429)
T PRK01742 309 TSDRSGSPQVYRMSASGG--GA---SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-VLSSTFLDESPS 378 (429)
T ss_pred EECCCCCceEEEEECCCC--Ce---EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE-EecCCCCCCCce
Confidence 555678899998764322 11 111 2332 4578999999998887765 556998765432 111222334456
Q ss_pred EEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 373 LAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 373 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
++|+|++|+.++.++.+.+|.+.. .....+..+..|.+.+...+|+|-
T Consensus 379 ~sPdG~~i~~~s~~g~~~~l~~~~-~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 379 ISPNGIMIIYSSTQGLGKVLQLVS-ADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEE-CCCCceEEccCCCCCCCCcccCCC
Confidence 899999999999999988887643 114567777888888999999985
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.1e-17 Score=150.99 Aligned_cols=253 Identities=11% Similarity=0.156 Sum_probs=171.4
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
....+.+|++.|+|++|+.+|.+|++|+.|-.+.|||.-..+...... .
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-------------------------------T 90 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-------------------------------T 90 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-------------------------------c
Confidence 345788999999999999999999999999999999987655443333 2
Q ss_pred eccCCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCC----------CeeeEEeecCCCceeEEEEcCCC--EEEEEeCCC
Q 012007 233 RHYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISD----------CKCLESINAHDDAINSVVAGFDS--LVFTGSADG 298 (473)
Q Consensus 233 ~~~~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~----------~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg 298 (473)
+|...|.+++|-| +..++++|..|..|+++|+.. ......+..|...|..|+..|++ .+.+++.||
T Consensus 91 gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG 170 (758)
T KOG1310|consen 91 GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG 170 (758)
T ss_pred ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence 5999999999999 567899999999999999974 23345567788999999998887 889999999
Q ss_pred cEEEEeCcccCCCc--c--eeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE
Q 012007 299 TVKVWRRELQGKGT--K--HCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL 373 (473)
Q Consensus 299 ~i~vwd~~~~~~~~--~--~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 373 (473)
+|+-+|++...... . ...........-...++.++|.. .+|++|+.|-..++||.+...+....- .....
T Consensus 171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~-----~~~~~ 245 (758)
T KOG1310|consen 171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSD-----GTMNT 245 (758)
T ss_pred ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCC-----ccccC
Confidence 99999998522111 0 00111122233456789999954 789999999999999975432221110 00000
Q ss_pred EecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 374 AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 374 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.+- -.++.|+-|...... ..-..+......++-+.|+|+|.. +|++-+.+ .|+++++.
T Consensus 246 ~pp-------~~~~cv~yf~p~hlk--n~~gn~~~~~~~~t~vtfnpNGtE------------lLvs~~gE-hVYlfdvn 303 (758)
T KOG1310|consen 246 CPP-------KDCRCVRYFSPGHLK--NSQGNLDRYITCCTYVTFNPNGTE------------LLVSWGGE-HVYLFDVN 303 (758)
T ss_pred CCC-------cccchhheecCcccc--CcccccccceeeeEEEEECCCCcE------------EEEeeCCe-EEEEEeec
Confidence 100 012233333221100 000000001123577899999874 77777765 69999999
Q ss_pred CCCCCccCCC
Q 012007 454 EHAPDLKGLH 463 (473)
Q Consensus 454 ~~~~~~~~~~ 463 (473)
..+.....+.
T Consensus 304 ~~~~~~~y~~ 313 (758)
T KOG1310|consen 304 EDKSPTPYFL 313 (758)
T ss_pred CCCCceeecC
Confidence 8887666544
No 193
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=8.1e-17 Score=139.08 Aligned_cols=197 Identities=16% Similarity=0.242 Sum_probs=157.1
Q ss_pred CEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC---CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCC
Q 012007 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHE 324 (473)
Q Consensus 248 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 324 (473)
..++++...|.|++||..+++.+..++++...++.+.|..+ ..+.+|+.||+|++||+|...+. .......+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~----a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES----ARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh----hheeccCCC
Confidence 56888888999999999999999999999999999998764 28999999999999999965432 122233333
Q ss_pred -ccEEEEEEccCCCEEEEeCC----CCcEEEEecCCccc-ccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecC
Q 012007 325 -NAVTALAVNQESAVVYCGSS----DGLVNFWECEKHLS-HGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 325 -~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~ 395 (473)
.+..+++.+-.++.+++|+. +-.|.+||++...+ +......|..-|+++.+. .++|++|+.||.|.|||+.
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 46677777777888888854 67899999998766 556677899999887763 7899999999999999998
Q ss_pred CCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 396 ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 396 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
.......+...-.|...|.++.|..++-. .|.+-+.+.+..+|++..+.+...
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~yk------------rI~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYK------------RIMCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcc------------eEEEEEccCceeEEEccCCChhhc
Confidence 75444444444567778999999998732 488888999999999998875444
No 194
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=2.3e-16 Score=139.31 Aligned_cols=265 Identities=21% Similarity=0.230 Sum_probs=186.0
Q ss_pred cccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeE-EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 161 SGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVH-KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 161 ~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
..+|..+.|.++.. .|+||+.|..|++|.+........ ..+.. ...+-+|..+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y------------------------~s~Ls~H~~aV 68 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEY------------------------LSSLSRHTRAV 68 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEE------------------------eecccCCccee
Confidence 46899999988776 999999999999999876543211 01110 01122499999
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcC--------C--------CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEE
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRIS--------D--------CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVK 301 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~--------~--------~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~ 301 (473)
+++.|+|+|.+|++|+.+|.|.+|-.. + ......+.+|...|..++|++++ ++++++.|..++
T Consensus 69 N~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~ 148 (434)
T KOG1009|consen 69 NVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVR 148 (434)
T ss_pred EEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEE
Confidence 999999999999999999999999765 2 23345667899999999999998 889999999999
Q ss_pred EEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc---------eee--------
Q 012007 302 VWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG---------VLR-------- 364 (473)
Q Consensus 302 vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------~~~-------- 364 (473)
+||+. ...+...+..|...+..++|.|-++++++-+.|...+.+++........ ...
T Consensus 149 l~Dv~------~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r 222 (434)
T KOG1009|consen 149 LWDVH------AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR 222 (434)
T ss_pred EEEec------cceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee
Confidence 99996 3446778899999999999999999999999998777776543211100 000
Q ss_pred -cCcc------eEEEEEecCCEEEEEeC----CC-----cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 365 -GHKM------AVLCLAAAGNLVFSGSA----DR-----NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 365 -~~~~------~v~~~~~~~~~l~s~~~----dg-----~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
-|.. .-.+|+|+|.+|++... .+ ..++|+... ..++...+.+-..++..+.|+|---....+
T Consensus 223 LfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~--l~rP~~~lp~~~k~~lavr~~pVy~elrp~ 300 (434)
T KOG1009|consen 223 LFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD--LKRPAARLPSPKKPALAVRFSPVYYELRPL 300 (434)
T ss_pred eeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccc--ccCceeecCCCCcceEEEEeeeeEEEeccc
Confidence 0111 12467788988887642 22 335555442 245667777777777888877642111111
Q ss_pred cc-----CCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 429 HQ-----KGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 429 ~~-----~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.. .-+.+.++|.++.| .|.|||.+...|.
T Consensus 301 ~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~ 334 (434)
T KOG1009|consen 301 SSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPL 334 (434)
T ss_pred cccccccccccceEEEEeecc-eEEEeccccccce
Confidence 11 13455577777765 7999998876553
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=9.2e-16 Score=126.58 Aligned_cols=242 Identities=18% Similarity=0.282 Sum_probs=171.6
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
..|.+-+|+|.+++|+.|..+|.|.+..+.+.........+ ........+|..+|+.+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~g----------------------k~~iv~eqahdgpiy~~ 68 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPG----------------------KLKIVPEQAHDGPIYYL 68 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCC----------------------CcceeeccccCCCeeee
Confidence 34666789999999999999999999988654221111100 01111224599999999
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEcCCCee------eEEe--ecCC-----CceeEEEEcCCC-EEEEEeCCCcEEEEeCcc
Q 012007 242 SLNAEQGLLYSGSWDKTLKVWRISDCKC------LESI--NAHD-----DAINSVVAGFDS-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~------~~~~--~~~~-----~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~ 307 (473)
+|. ..+|++|+ ||.|+-|..+.... +.+. +.|. -.|+++...|.. -++.++.|+.++.||++.
T Consensus 69 ~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~ 145 (325)
T KOG0649|consen 69 AFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED 145 (325)
T ss_pred eee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC
Confidence 998 35677777 59999997754321 1111 1122 357888887654 666666999999999974
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc--------eeecC-cceEEEEEecCC
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG--------VLRGH-KMAVLCLAAAGN 378 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~~-~~~v~~~~~~~~ 378 (473)
+ .+...+.+|...|.++.--.....+++|+.||++++||+++.+.... .++.| ...|.+++.+..
T Consensus 146 G------~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed 219 (325)
T KOG0649|consen 146 G------RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED 219 (325)
T ss_pred C------EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc
Confidence 3 35678999999999999866666788999999999999987644321 12222 346789999999
Q ss_pred EEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 379 LVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 379 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+|++|+ ...+.+|.++... ..++..+. .+|..+.|..+ .++++|..+.|.-|.+..
T Consensus 220 WlvCGg-Gp~lslwhLrsse-~t~vfpip---a~v~~v~F~~d---------------~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 220 WLVCGG-GPKLSLWHLRSSE-STCVFPIP---ARVHLVDFVDD---------------CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eEEecC-CCceeEEeccCCC-ceEEEecc---cceeEeeeecc---------------eEEEeccccceeeeeecc
Confidence 999988 4579999999832 23444443 45788888877 678888888888888764
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=3.4e-16 Score=150.69 Aligned_cols=208 Identities=16% Similarity=0.228 Sum_probs=153.2
Q ss_pred ccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCee--eEE----eecCCCceeEEEEcCCC---EEEEEeCCCcEEEE
Q 012007 234 HYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC--LES----INAHDDAINSVVAGFDS---LVFTGSADGTVKVW 303 (473)
Q Consensus 234 ~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~--~~~----~~~~~~~v~~l~~~~~~---~l~s~~~dg~i~vw 303 (473)
....|.|++|+| +..+++.|..+|.|.+||++.+.. ... ...|..+++.+.|..+. -+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 678899999999 667888889999999999987655 222 23588899999996653 59999999999999
Q ss_pred eCcccCCCcceeeeeeec------cCCccEEEEEEccC-CCEEEEeCCCCcEEEEe---cCCcc----cccceeecCcce
Q 012007 304 RRELQGKGTKHCLAQVLL------KHENAVTALAVNQE-SAVVYCGSSDGLVNFWE---CEKHL----SHGGVLRGHKMA 369 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd---~~~~~----~~~~~~~~~~~~ 369 (473)
+++.-.......+..... .....+++++|.+. -..+++|+.+|.|.--+ .+... ........|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 987533221111111111 22356899999884 46788999999987733 22222 222345567788
Q ss_pred EEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc
Q 012007 370 VLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446 (473)
Q Consensus 370 v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~ 446 (473)
|.++.++ ...+++++ |.+|+||.-... ..++..+..+...|++++|+|.... +|+++..||.
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~--~~Pl~~~~~~~~~v~~vaWSptrpa------------vF~~~d~~G~ 465 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI--ASPLLSLDSSPDYVTDVAWSPTRPA------------VFATVDGDGN 465 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCC--CCcchhhhhccceeeeeEEcCcCce------------EEEEEcCCCc
Confidence 8888765 45566666 999999987721 4667777788888999999999875 8999999999
Q ss_pred EEEEEcCCCC
Q 012007 447 VKVWRVSEHA 456 (473)
Q Consensus 447 v~iW~i~~~~ 456 (473)
|.|||+....
T Consensus 466 l~iWDLl~~~ 475 (555)
T KOG1587|consen 466 LDIWDLLQDD 475 (555)
T ss_pred eehhhhhccc
Confidence 9999997643
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.1e-16 Score=142.28 Aligned_cols=194 Identities=21% Similarity=0.202 Sum_probs=146.4
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.+.++..+|..|++|+.||++|||+.. ..+.....|.+.|.++.|+|||++|++.+.| ..+||+++++.........
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 677888889999999999999999954 4455667799999999999999999999999 8999999988433222211
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC---CEE--EEEeCCCCEEEEEcCCCee-----eEE
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ---GLL--YSGSWDKTLKVWRISDCKC-----LES 272 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l--~s~s~dg~v~vwd~~~~~~-----~~~ 272 (473)
........+.|+.++ .++ +.....+.|+.||+...+. ...
T Consensus 227 ------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~ 276 (398)
T KOG0771|consen 227 ------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK 276 (398)
T ss_pred ------------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh
Confidence 123344556677665 322 2333445677776643221 111
Q ss_pred eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 273 INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 273 ~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
.-.-...|.+++.+.+| +++.|+.||.|.|++.. .-+........|...|+.+.|+|+.+++++.+.|..+.+.
T Consensus 277 ~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~-----~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 277 KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK-----SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEec-----eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 11234479999999998 88899999999999986 4555666778899999999999999999999999988888
Q ss_pred ecC
Q 012007 352 ECE 354 (473)
Q Consensus 352 d~~ 354 (473)
.+.
T Consensus 352 ~l~ 354 (398)
T KOG0771|consen 352 KLA 354 (398)
T ss_pred EEe
Confidence 764
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.5e-16 Score=151.40 Aligned_cols=246 Identities=20% Similarity=0.274 Sum_probs=176.2
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
..-..+.|+|-...++++...-.|+|||.+.+.....+..+.. ....|+.+
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~-----------------------------~~t~Vs~l 1115 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAF-----------------------------PDTRVSDL 1115 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCC-----------------------------CCCcccee
Confidence 3566778888888899988777999999998876544443321 44568888
Q ss_pred EEcC--CCCEEEEEeCCCCEEEEEcCC-----CeeeEEeec-------CCCceeEEEEcCC-CEEEEEeCCCcEEEEeCc
Q 012007 242 SLNA--EQGLLYSGSWDKTLKVWRISD-----CKCLESINA-------HDDAINSVVAGFD-SLVFTGSADGTVKVWRRE 306 (473)
Q Consensus 242 ~~~~--~~~~l~s~s~dg~v~vwd~~~-----~~~~~~~~~-------~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~~ 306 (473)
.+-. |..++++|+.||.|+||+-.. .+.+..+.+ ..+.-.-+.|... |+|++++.-..|+|||..
T Consensus 1116 ~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1116 ELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred eeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc
Confidence 8765 556899999999999997532 233333221 1111122345443 578888888999999997
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCccc--ccceeecCcce--EEEEEec--CC-
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLS--HGGVLRGHKMA--VLCLAAA--GN- 378 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~--v~~~~~~--~~- 378 (473)
..........+....|+++.-+- .|+.+++|..||.|++||.+.... .....+.|... |..++.+ |-
T Consensus 1196 -----~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~ 1270 (1387)
T KOG1517|consen 1196 -----KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG 1270 (1387)
T ss_pred -----cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc
Confidence 34444455556677788886654 569999999999999999886433 55667778777 7777654 33
Q ss_pred EEEEEeCCCcEEEEecCCCCceeEEEEecCCC--C-ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 379 LVFSGSADRNICLWRREESGAHSCLAVLTGHT--G-PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 379 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~--~-~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.|++|+.||.|++||++... .........|. + .++++..+++.. ++|+|+. +.|+||++...
T Consensus 1271 elvSgs~~G~I~~~DlR~~~-~e~~~~iv~~~~yGs~lTal~VH~hap-------------iiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSS-KETFLTIVAHWEYGSALTALTVHEHAP-------------IIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred ceeeeccCCeEEEEecccCc-ccccceeeeccccCccceeeeeccCCC-------------eeeecCc-ceEEEEecChh
Confidence 59999999999999999742 22222333332 3 599999999988 8999998 99999999765
Q ss_pred C
Q 012007 456 A 456 (473)
Q Consensus 456 ~ 456 (473)
.
T Consensus 1336 ~ 1336 (1387)
T KOG1517|consen 1336 Q 1336 (1387)
T ss_pred h
Confidence 4
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=5.7e-14 Score=122.99 Aligned_cols=226 Identities=13% Similarity=0.204 Sum_probs=159.8
Q ss_pred EEEEEec--CCEEEEeeCCCcEEEeeCCcccccccc--CcccEEEEEEeCCCCEEEEEeCC--CeEEEEeCCCCCeeeEE
Q 012007 126 IYSLAAS--GDLLYTGSDSKNIRVWKNLKEFSGFKS--NSGLVKAIIISGDSNKIFTGHQD--GKIRIWKVSRKNASVHK 199 (473)
Q Consensus 126 V~~~~~~--g~~l~tg~~dg~i~vwd~~~~~~~~~~--h~~~V~~l~~s~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~ 199 (473)
+..+.++ ...|..|+.||. ++|+.......+.. ....|-.+-|+.. ++|..+.+ ..+++.++..+..+...
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~ 84 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEI 84 (391)
T ss_pred eeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEE
Confidence 3344454 568889999884 78865432222222 2334555666554 77666654 34888887766544433
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec---C
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA---H 276 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~ 276 (473)
. ....|.++.++. +.|+++-.+ .|+|||+++.+.++++.. +
T Consensus 85 ~---------------------------------fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n 128 (391)
T KOG2110|consen 85 F---------------------------------FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPN 128 (391)
T ss_pred e---------------------------------cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCC
Confidence 3 556788888865 567777654 499999999999988764 4
Q ss_pred CCceeEEEEcCCC-EEEE--EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc-EEEEe
Q 012007 277 DDAINSVVAGFDS-LVFT--GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL-VNFWE 352 (473)
Q Consensus 277 ~~~v~~l~~~~~~-~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~-i~iwd 352 (473)
...+.++..+.++ +++. ....|.|.+||+. .......+..|++.+.+++|+++|.+||+++..|+ ||+|.
T Consensus 129 ~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~------nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~ 202 (391)
T KOG2110|consen 129 PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFS 202 (391)
T ss_pred ccceEeeccCCCCceEEecCCCCCceEEEEEcc------cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEE
Confidence 4456666666655 5553 3346899999985 34456677899999999999999999999999997 69999
Q ss_pred cCCcccccceeecCc-ceE--EEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 353 CEKHLSHGGVLRGHK-MAV--LCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 353 ~~~~~~~~~~~~~~~-~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+.++.......+|-. ..+ ++|++++.+|++.+..++|++|.+..
T Consensus 203 v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 203 VPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred cCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 988776655555443 223 45566799999999999999999875
No 200
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=3.3e-17 Score=146.87 Aligned_cols=281 Identities=16% Similarity=0.179 Sum_probs=209.0
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCCcc-ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
...+-+|..|+.|+.-|.|-.+|.... +..-..-...|.++.|-.+.+++|++ ....+.|||-...+.....
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHClk------ 207 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHCLK------ 207 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEeehh------
Confidence 345557999999999999999997633 22222235679999998888888876 4558999997655432221
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEE
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA 285 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~ 285 (473)
....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..+.-
T Consensus 208 ----------------------------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 208 ----------------------------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred ----------------------------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 3457888999999889999999999999999999999999988889999998
Q ss_pred cCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee
Q 012007 286 GFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR 364 (473)
Q Consensus 286 ~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 364 (473)
+|-+ .+-+|...|+|.+|... ...++..+..|.++|.+|++.++|+|+++.+.|..++|||++....+.....
T Consensus 260 NP~NaVih~GhsnGtVSlWSP~------skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 260 NPYNAVIHLGHSNGTVSLWSPN------SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCccceEEEcCCCceEEecCCC------CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 8887 77799999999999885 3345566788999999999999999999999999999999998766554444
Q ss_pred cCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC--CCceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 365 GHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH--TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 365 ~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
.|.. ..++.+.+-+++++....|.||.-........-..+..| .++|..+.|.|-.. +|-.|-
T Consensus 334 p~~a--~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED-------------vLGIGH 398 (545)
T KOG1272|consen 334 PHPA--SNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED-------------VLGIGH 398 (545)
T ss_pred CCCc--cccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH-------------eeeccc
Confidence 3443 445555555555555668999964322111112222223 45899999999876 666666
Q ss_pred CCCcEEEEEcCCCCCCccCCC
Q 012007 443 LDKSVKVWRVSEHAPDLKGLH 463 (473)
Q Consensus 443 ~Dg~v~iW~i~~~~~~~~~~~ 463 (473)
..|--.|.=...++|....+.
T Consensus 399 ~~G~tsilVPGsGePN~Ds~e 419 (545)
T KOG1272|consen 399 AGGITSILVPGSGEPNYDSLE 419 (545)
T ss_pred cCCceeEeccCCCCCCcchhc
Confidence 666655665666666665554
No 201
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3e-15 Score=137.79 Aligned_cols=282 Identities=14% Similarity=0.184 Sum_probs=192.6
Q ss_pred cCcccEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceE------EEeec-ceee
Q 012007 159 SNSGLVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYV------EVRRN-RSVL 230 (473)
Q Consensus 159 ~h~~~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~ 230 (473)
.+...-+.|..+|||+|++ +|..--.|++||+.................-..+........++ .+... ....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 4778889999999999865 55567789999998766555444433322222222211111111 11110 0001
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccC
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~ 309 (473)
.+.-...-..|+++.-..-|+.++....|+-++++.|+.+..+....+.++++..++.. +|++|+.+|.|..||.+...
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 11112233456666545556666667789999999999999999888999999998876 88888889999999998654
Q ss_pred CCcceeeeeeeccCCc-----cEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec----CCEE
Q 012007 310 KGTKHCLAQVLLKHEN-----AVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA----GNLV 380 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~l 380 (473)
.............|.+ .|+++.|+.+|-.+++|+.+|.|.|||++....+...-.+...+|..+.|. ++.|
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence 3333223333333433 499999999999999999999999999998766644444455667777763 3455
Q ss_pred EEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 381 FSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 381 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
++.. ...++|||-.++ +....+.. +..++.+++-|+.. +++++-.+..+..|=+....|.
T Consensus 289 ~S~D-k~~~kiWd~~~G---k~~asiEp-t~~lND~C~~p~sG-------------m~f~Ane~~~m~~yyiP~LGPa 348 (703)
T KOG2321|consen 289 VSMD-KRILKIWDECTG---KPMASIEP-TSDLNDFCFVPGSG-------------MFFTANESSKMHTYYIPSLGPA 348 (703)
T ss_pred Eecc-hHHhhhcccccC---Cceeeccc-cCCcCceeeecCCc-------------eEEEecCCCcceeEEccccCCC
Confidence 5543 568999999884 44554443 44599999999988 8999999998888888765543
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=4.4e-15 Score=127.42 Aligned_cols=231 Identities=12% Similarity=0.106 Sum_probs=172.5
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
-.++|+|.+|++|+..+|.+.....|.||.....+.-.... .+..|...|+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~h-----------------------------tls~Hd~~vt 59 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAH-----------------------------TLSEHDKIVT 59 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceece-----------------------------ehhhhCccee
Confidence 35789999999999999999999999999987765211111 1113999999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcC-CC--eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCccee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRIS-DC--KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~-~~--~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
+++|+|..+.|++++.|..-++|... .+ ++...+..+....+++.|+|.+ .|++|+....|.||-.+..+ .-..
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN--dWWV 137 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN--DWWV 137 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc--ceeh
Confidence 99999999999999999999999983 33 4455566788999999999987 89999999999999876332 2333
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEec-----CCc---------ccc---cceeecCcceE--EEEEec
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC-----EKH---------LSH---GGVLRGHKMAV--LCLAAA 376 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~-----~~~---------~~~---~~~~~~~~~~v--~~~~~~ 376 (473)
.......+.+.|+++.|+|++-+|++|+.|+..++|.. +.. ... ........+.+ ..|+++
T Consensus 138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 34456678899999999999999999999999999964 110 001 01111223344 556677
Q ss_pred CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 377 GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 377 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
|+.|+-.+.|+.+.+=|..... +.+.....-.-+..++.|-.+..
T Consensus 218 G~~lawv~Hds~v~~~da~~p~--~~v~~~~~~~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPS--ERVQSVATAQLPLLSVSWISENS 262 (361)
T ss_pred CCEeeEecCCCceEEeecCCCc--hhccchhhccCCceeeEeecCCc
Confidence 9999999999999999987632 22333333336778888877654
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=3.5e-14 Score=133.38 Aligned_cols=240 Identities=10% Similarity=0.176 Sum_probs=152.6
Q ss_pred EEEEEecCCEEEEee-CCCcEEEeeCCc--cccccc--cCcccEEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCeeeEE
Q 012007 126 IYSLAASGDLLYTGS-DSKNIRVWKNLK--EFSGFK--SNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 126 V~~~~~~g~~l~tg~-~dg~i~vwd~~~--~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~ 199 (473)
-..+++++++|++++ .++.|.+|+... .+.... ...+....++|+|++++|++++. ++.|.+|+++.......
T Consensus 39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~- 117 (330)
T PRK11028 39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA- 117 (330)
T ss_pred cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC-
Confidence 346678899887764 488999998642 121111 12345678999999999988775 78999999964321110
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEE-----e
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLES-----I 273 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~-----~ 273 (473)
.... ..+.....+++++|+++++++++ .++.|.+||+.+...+.. .
T Consensus 118 ~~~~----------------------------~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~ 169 (330)
T PRK11028 118 PIQI----------------------------IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV 169 (330)
T ss_pred ceee----------------------------ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCce
Confidence 0000 01223466788999999887665 568999999976432211 1
Q ss_pred e-cCCCceeEEEEcCCC-EEEEEeC-CCcEEEEeCcccCCCcceeeeeeecc------CCccEEEEEEccCCCEEEEeCC
Q 012007 274 N-AHDDAINSVVAGFDS-LVFTGSA-DGTVKVWRRELQGKGTKHCLAQVLLK------HENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 274 ~-~~~~~v~~l~~~~~~-~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
. ........+.++|++ +++++.. ++.|.+|+++.... .......+.. +......+.++|++++++++..
T Consensus 170 ~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 170 TTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG--EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred ecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC--CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC
Confidence 1 123345678999998 5656655 89999999973211 1111222111 1223346899999999998864
Q ss_pred -CCcEEEEecCCcccc---cc-eeecCcceEEEEEecCCEEEEEeC-CCcEEEEecCC
Q 012007 345 -DGLVNFWECEKHLSH---GG-VLRGHKMAVLCLAAAGNLVFSGSA-DRNICLWRREE 396 (473)
Q Consensus 345 -dg~i~iwd~~~~~~~---~~-~~~~~~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~ 396 (473)
++.|.+|++...... .. ...+....-..++++|++|+++.. +++|.+|+++.
T Consensus 248 ~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 248 TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 789999998643211 11 111212234677889999998775 88999998863
No 204
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=2.2e-14 Score=131.24 Aligned_cols=277 Identities=14% Similarity=0.196 Sum_probs=169.3
Q ss_pred cEEEEEec--CCEEEEeeCCCcEEEeeCC------ccccccccCcccEEEEEE-----eCCCCEEEEEeCCCeEEEEeCC
Q 012007 125 HIYSLAAS--GDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIII-----SGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 125 ~V~~~~~~--g~~l~tg~~dg~i~vwd~~------~~~~~~~~h~~~V~~l~~-----s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
.+....++ |++|+-.-. ..+.+|+.. +.+....-......|-+| .+.+--|+.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 44555554 555554433 357777643 112111111122233344 3456668888888888888865
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
..+....+... . .-....|+|+.|-| +...++++-.+|.+++||..-
T Consensus 204 ~~~~sklfne~----------------r------------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~---- 251 (636)
T KOG2394|consen 204 NFEVSKLFNEE----------------R------------LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI---- 251 (636)
T ss_pred hhHHHHhhhhc----------------c------------cccccceEEEEEEeCCCceEEEEEecCceEEeeccc----
Confidence 52221111100 0 01447899999999 445777778899999999721
Q ss_pred EEeecCCCceeEEEE--cCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 271 ESINAHDDAINSVVA--GFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~--~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
....+...+ .+++ .+... .|.-. ....++....-.++.|..++|+|||++||+.+.||.
T Consensus 252 ------~~~~t~p~~~~~k~~~~f~i~-------t~ksk-----~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf 313 (636)
T KOG2394|consen 252 ------VCGATAPSYQALKDGDQFAIL-------TSKSK-----KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF 313 (636)
T ss_pred ------cccCCCCcccccCCCCeeEEe-------eeecc-----ccCCccceeEeccccccceeEcCCCceEEEEecCce
Confidence 111111111 1222 22211 11111 010122223333558999999999999999999999
Q ss_pred EEEEecCCcccccceeecC--cceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 348 VNFWECEKHLSHGGVLRGH--KMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
++|||..+.+.+ ...+.- .....||+|||+||++|++|.-|.||.+.. .+.+..-.+|..+|+.++|.|--...
T Consensus 314 LRvF~fdt~eLl-g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e---rRVVARGqGHkSWVs~VaFDpytt~~ 389 (636)
T KOG2394|consen 314 LRIFDFDTQELL-GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE---RRVVARGQGHKSWVSVVAFDPYTTST 389 (636)
T ss_pred EEEeeccHHHHH-HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc---ceEEEeccccccceeeEeeccccccc
Confidence 999999875433 233222 234567788999999999999999999988 68899999999999999999521100
Q ss_pred cc-----------------------------------cccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 426 HE-----------------------------------YHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 426 ~~-----------------------------------~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.. +.....-.+.|.+.|.|-.+.+||+.+..
T Consensus 390 ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 390 EEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred ccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 00 00001145689999999999999998764
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=8.1e-16 Score=136.76 Aligned_cols=196 Identities=18% Similarity=0.266 Sum_probs=148.6
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeee
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
.+++|+.+|..|++|+.||+++||+..+...+.....|...|.++.|+|++ +|++.+.| ..+||+.+.+.. +.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-----~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-----LA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-----hh
Confidence 789999999999999999999999998888888888999999999999999 88888888 999999985421 11
Q ss_pred eee-ccCCccEEEEEEccCC-----CEEEEeCCCCcEEEEecCCc-----ccccceeecC-cceEEEEEecCCEEEEEeC
Q 012007 318 QVL-LKHENAVTALAVNQES-----AVVYCGSSDGLVNFWECEKH-----LSHGGVLRGH-KMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 318 ~~~-~~~~~~v~~l~~~~~~-----~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~-~~~v~~~~~~~~~l~s~~~ 385 (473)
... ...+.....+.|+.++ .+++....-+.|+.||+... .+..+....+ ....+.++.+|++++.|+.
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 111 2334445667787766 23333344556666665421 1222233333 4555677788999999999
Q ss_pred CCcEEEEecCCCCceeEEE-EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 386 DRNICLWRREESGAHSCLA-VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
||.|-|++..+ .++++ .-+.|...|+.+.|+|+.+ ++++.+.|....|..+.-..
T Consensus 302 dGsVai~~~~~---lq~~~~vk~aH~~~VT~ltF~Pdsr-------------~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 302 DGSVAIYDAKS---LQRLQYVKEAHLGFVTGLTFSPDSR-------------YLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred CCcEEEEEece---eeeeEeehhhheeeeeeEEEcCCcC-------------cccccccCCceeEEEEeecc
Confidence 99999999988 34333 3457999999999999998 79999999999999987643
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=1.1e-14 Score=145.21 Aligned_cols=279 Identities=13% Similarity=0.196 Sum_probs=176.3
Q ss_pred eeCC-ccccccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeee-EEeeccccccceeEeecCCCcceEEEe
Q 012007 148 WKNL-KEFSGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASV-HKRVGSLPTFKDYVKSSVNPKNYVEVR 224 (473)
Q Consensus 148 wd~~-~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (473)
|+.. ..+..+..|...|..++.+++. .+++||+.||+|++|+...-.... ..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~r------------------------ 1089 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSAR------------------------ 1089 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceee------------------------
Confidence 6654 4466788899999999997765 999999999999999986532210 000
Q ss_pred ecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC--e-----eeEEeecC-CCceeEE-EEcCC--C-EEE
Q 012007 225 RNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC--K-----CLESINAH-DDAINSV-VAGFD--S-LVF 292 (473)
Q Consensus 225 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~--~-----~~~~~~~~-~~~v~~l-~~~~~--~-~l~ 292 (473)
...........+.++.+.+.++.+|+++.||.|++.++... + +.+..+.+ .+.+..+ ++... . .++
T Consensus 1090 --S~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lv 1167 (1431)
T KOG1240|consen 1090 --SELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLV 1167 (1431)
T ss_pred --eeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEE
Confidence 00111115678899999999999999999999999998652 1 12222222 2334333 33222 2 788
Q ss_pred EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE
Q 012007 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 293 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
.+..-+.|..||++.... .+ ........+.|++++.+|.+.+++.|+..|.+.+||++-.........++...+..
T Consensus 1168 y~T~~~~iv~~D~r~~~~--~w--~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~ 1243 (1431)
T KOG1240|consen 1168 YATDLSRIVSWDTRMRHD--AW--RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRH 1243 (1431)
T ss_pred EEEeccceEEecchhhhh--HH--hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcce
Confidence 888899999999985332 11 11223345789999999999999999999999999998765555555555556544
Q ss_pred EE--ec---CCEEEEEe--CCCcEEEEecCCCCceeEEEEecC-----CCCceeEEEEecCCCCCcccccCCCccEEEEE
Q 012007 373 LA--AA---GNLVFSGS--ADRNICLWRREESGAHSCLAVLTG-----HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYS 440 (473)
Q Consensus 373 ~~--~~---~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s 440 (473)
+. +- ....++++ ..+.|.+|++.++.....+..-.+ +..+.. .+-.|... ...++...++.-++++
T Consensus 1244 v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~-~~~kp~~~-~~~~~~~~~~~~~~lt 1321 (1431)
T KOG1240|consen 1244 VWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSN-DARKPDSL-AGISCGVCEKNGFLLT 1321 (1431)
T ss_pred EEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccc-cCCCCCcc-cceeeecccCCceeee
Confidence 43 22 24555544 467899999998533222222100 000110 00001111 0111111222228999
Q ss_pred eeCCCcEEEEEcCCCCCC
Q 012007 441 GSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 441 ~s~Dg~v~iW~i~~~~~~ 458 (473)
|+.|..|+.||.......
T Consensus 1322 ggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1322 GGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred cCCccceeeccCCCcccc
Confidence 999999999999876544
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=8.8e-16 Score=140.12 Aligned_cols=204 Identities=17% Similarity=0.221 Sum_probs=154.9
Q ss_pred CCEEEEeeCCCcEEEeeC-CccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 133 GDLLYTGSDSKNIRVWKN-LKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
.+.++.++.||.+.|-+- .+.......|.++|.+-.|+|||.-|++++.||.|++|.-...-..
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRS--------------- 139 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRS--------------- 139 (737)
T ss_pred cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHH---------------
Confidence 346778888999988863 4555677889999999999999999999999999999986432110
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-E
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-L 290 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~ 290 (473)
.......+|.|++|.|+.+.++-+. .+.+.|=-+.....+-.+++|++-|.++.|++.. +
T Consensus 140 ------------------tl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l 200 (737)
T KOG1524|consen 140 ------------------TVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI 200 (737)
T ss_pred ------------------HHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccc
Confidence 0012567899999999876555544 3577787777777788899999999999999886 9
Q ss_pred EEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE
Q 012007 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV 370 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 370 (473)
+++|+.|-..++||-. .........|+.+|++++|+|+ ..++.++. .++++ .....+.|
T Consensus 201 I~sgGED~kfKvWD~~-------G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~------------~~p~~GSi 259 (737)
T KOG1524|consen 201 IASGGEDFRFKIWDAQ-------GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF------------SSPRVGSI 259 (737)
T ss_pred eeecCCceeEEeeccc-------CcccccCChhccceeeeeeccc-cceeeeee-eeeee------------cCCCccce
Confidence 9999999999999964 2234566789999999999999 55555553 33441 11223344
Q ss_pred --EEEEecCCEEEEEeCCCcEEE
Q 012007 371 --LCLAAAGNLVFSGSADRNICL 391 (473)
Q Consensus 371 --~~~~~~~~~l~s~~~dg~i~i 391 (473)
.++++||..+++|+..|.+.+
T Consensus 260 fnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 260 FNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred EEEEEcCCCceeeccccCceEEE
Confidence 556678999999998887765
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=4.4e-15 Score=135.64 Aligned_cols=259 Identities=15% Similarity=0.161 Sum_probs=172.3
Q ss_pred eecccEEEEEecC-CEEEEeeCCCcEEEee-CC-ccccccccCcccEEEEEE-e-------CCCCEEEEEeCCCeEEEEe
Q 012007 121 RKEGHIYSLAASG-DLLYTGSDSKNIRVWK-NL-KEFSGFKSNSGLVKAIII-S-------GDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 121 ~h~~~V~~~~~~g-~~l~tg~~dg~i~vwd-~~-~~~~~~~~h~~~V~~l~~-s-------~~~~~l~s~~~dg~i~vwd 189 (473)
.|...|.|+.+.+ .-++..++|..+.+|. .. .......-....|....+ - .....|+.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 3555566777763 3455556666777774 32 112222111111211111 0 1224688889999998887
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
-...-.... -.|.+++.|-.|+|+|.-|+++++||.|++|. ++|-.
T Consensus 92 k~~rVE~sv---------------------------------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGML 137 (737)
T KOG1524|consen 92 KSARVERSI---------------------------------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGML 137 (737)
T ss_pred ccchhhhhh---------------------------------hhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchH
Confidence 543321110 13999999999999999999999999999998 45655
Q ss_pred eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
-.++-....+|.|++|.|+..-+.-+..+.+.|=-+. ..........|.+-|.++.|++..+++++|+.|-..+
T Consensus 138 RStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfK 211 (737)
T KOG1524|consen 138 RSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLA------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFK 211 (737)
T ss_pred HHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecc------cccceeEEeccCcEEEEeecCccccceeecCCceeEE
Confidence 5555567789999999998722222344555554443 2223456778999999999999999999999999999
Q ss_pred EEecCCcccccceeecCcceEEEEEecC-CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 350 FWECEKHLSHGGVLRGHKMAVLCLAAAG-NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
+||....... ....|.-++++++++. ..++.++. ++++ .-....+.|..++|++||.
T Consensus 212 vWD~~G~~Lf--~S~~~ey~ITSva~npd~~~~v~S~-nt~R--------------~~~p~~GSifnlsWS~DGT----- 269 (737)
T KOG1524|consen 212 IWDAQGANLF--TSAAEEYAITSVAFNPEKDYLLWSY-NTAR--------------FSSPRVGSIFNLSWSADGT----- 269 (737)
T ss_pred eecccCcccc--cCChhccceeeeeeccccceeeeee-eeee--------------ecCCCccceEEEEEcCCCc-----
Confidence 9998754333 4456777788877764 34444432 2333 2234567899999999998
Q ss_pred ccCCCccEEEEEeeCCCcEEE
Q 012007 429 HQKGDQRWTVYSGSLDKSVKV 449 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~i 449 (473)
.++.|+..|.|.+
T Consensus 270 --------Q~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 270 --------QATCGTSTGQLIV 282 (737)
T ss_pred --------eeeccccCceEEE
Confidence 7888888887765
No 209
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.5e-13 Score=133.08 Aligned_cols=311 Identities=14% Similarity=0.177 Sum_probs=210.1
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCC---CEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDS---NKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.++.|+++++.... ..|.||.+. ..+..+.+|..+++.+.+.|.. .++++++.||.|++||...+.........
T Consensus 23 vfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~ 101 (792)
T KOG1963|consen 23 VFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN 101 (792)
T ss_pred ccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC
Confidence 46678888877775 489999755 5677899999999999997754 47889999999999999988776655543
Q ss_pred ccccccee-----------EeecCCCcceE--------EEeecceeeEe--------eccCCeeEEEEcCCCCEEEEEeC
Q 012007 203 SLPTFKDY-----------VKSSVNPKNYV--------EVRRNRSVLKI--------RHYDAVSCLSLNAEQGLLYSGSW 255 (473)
Q Consensus 203 ~~~~~~~~-----------~~~~~~~~~~~--------~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~l~s~s~ 255 (473)
.......+ ..+..+..... ...+....... .|.. -.+|.+++.|.+.+..-
T Consensus 102 ~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~- 179 (792)
T KOG1963|consen 102 LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVH- 179 (792)
T ss_pred CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEE-
Confidence 22111111 00100000000 00000000111 1211 35677888777666665
Q ss_pred CCCEEEEEcCCCeeeEE----eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEE
Q 012007 256 DKTLKVWRISDCKCLES----INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTAL 330 (473)
Q Consensus 256 dg~v~vwd~~~~~~~~~----~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l 330 (473)
+..+.+|+......... -..|...+++.+++|.+ +++++..||.|.+|.--... ........+.-|...|+++
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~--~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS--DDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc--cccccceEEEeccccccee
Confidence 45688998877541111 12466668999999998 89999999999999643211 1222335567788999999
Q ss_pred EEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 331 AVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 331 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
+|+++|.+|++|+.+|.+.+|.+.++. .+.+..-...+ ..+++|+.+.+....|+.|.+....+......+..+..
T Consensus 258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~ 335 (792)
T KOG1963|consen 258 SFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP 335 (792)
T ss_pred EEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC
Confidence 999999999999999999999999866 34555455555 45568899999999999999998865322222222221
Q ss_pred --------CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 409 --------HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 409 --------h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
..+-.+.++++|.-. .++-.+..|.|.+||+.+....
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~~-------------~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRTN-------------SLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred CCccccccccccceeEEEcCCCC-------------ceeecCCCceEEEEecccccee
Confidence 245578889999544 5788889999999999876544
No 210
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.65 E-value=1.5e-14 Score=125.32 Aligned_cols=249 Identities=17% Similarity=0.256 Sum_probs=178.6
Q ss_pred cceeeeeeecccEEEEE--ecCCEEEEeeCCCcEEEeeCC---ccc-cccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 114 GLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL---KEF-SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~--~~g~~l~tg~~dg~i~vwd~~---~~~-~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
.+...+.||.+.|++.. +-..-+++.+.|.++|||-.. +.- ........+++++.+.++...|+.|-..|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 34556777888777644 446679999999999999433 211 122334678999999999999999999999988
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
+.+...-..... ......|...|..+-|+....++++.+.|..+.---.+.+
T Consensus 95 fs~sedfnkm~~----------------------------~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 95 FALSEDFNKMTF----------------------------LKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred EEhhhhhhhcch----------------------------hhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence 776432111100 0111248999999999999999999999988765555555
Q ss_pred eeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 268 KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
..+..+... ..-+++.+.-. +.+.|...|.|.+-.+.. ....+...+.+|...+++++|.+....|++|..|..
T Consensus 147 ~~lg~Y~~~-~~~t~~~~d~~-~~fvGd~~gqvt~lr~~~----~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~ 220 (404)
T KOG1409|consen 147 NRLGGYNFE-TPASALQFDAL-YAFVGDHSGQITMLKLEQ----NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS 220 (404)
T ss_pred CcccceEee-ccCCCCceeeE-EEEecccccceEEEEEee----cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc
Confidence 544332210 01111111111 566777778887776653 344467788999999999999999999999999999
Q ss_pred EEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCC
Q 012007 348 VNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+.+||+.........+.+|...|..++. .-+.+++++.||.|.+|+++.
T Consensus 221 vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 221 VIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999998766666788889888877664 367899999999999999874
No 211
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=7.7e-14 Score=134.87 Aligned_cols=234 Identities=13% Similarity=0.021 Sum_probs=153.1
Q ss_pred cEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcc
Q 012007 144 NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ---DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKN 219 (473)
Q Consensus 144 ~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (473)
.|.+||.. .....+..+...+...+|+|||+.|+..+. +..|.+|++.+++......
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~------------------- 240 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS------------------- 240 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-------------------
Confidence 68888865 334445556778999999999999886543 3579999998765322111
Q ss_pred eEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCC--CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEe
Q 012007 220 YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS 295 (473)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~ 295 (473)
....+....|+|||+.|+.. +.+| .|++||+.+++.... ..+...+....|+|++ .|+..+
T Consensus 241 --------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s 305 (429)
T PRK03629 241 --------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTS 305 (429)
T ss_pred --------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEe
Confidence 22234468999999988765 4444 489999988765443 3344567788999998 455444
Q ss_pred C-CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC---CcEEEEecCCcccccceeecCcceEE
Q 012007 296 A-DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD---GLVNFWECEKHLSHGGVLRGHKMAVL 371 (473)
Q Consensus 296 ~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~ 371 (473)
. ++...+|.+...+. . ...+...........|+|+|++|+..+.+ ..|.+||+.++... .....+.....
T Consensus 306 ~~~g~~~Iy~~d~~~g-~----~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p 379 (429)
T PRK03629 306 DQAGRPQVYKVNINGG-A----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETP 379 (429)
T ss_pred CCCCCceEEEEECCCC-C----eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCc
Confidence 4 45566664432211 1 11222233445678999999988776543 35888998765422 12122223346
Q ss_pred EEEecCCEEEEEeCCCc---EEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 372 CLAAAGNLVFSGSADRN---ICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 372 ~~~~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
.+++||++|+.++.++. +.++++.. .....+.+|.+.+...+|+|-
T Consensus 380 ~~SpDG~~i~~~s~~~~~~~l~~~~~~G----~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 380 SIAPNGTMVIYSSSQGMGSVLNLVSTDG----RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eECCCCCEEEEEEcCCCceEEEEEECCC----CCeEECccCCCCcCCcccCCC
Confidence 78899999999988765 66777754 334556678888999999873
No 212
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=9e-14 Score=120.56 Aligned_cols=272 Identities=14% Similarity=0.224 Sum_probs=172.5
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeCC---c----cccccccCc------------ccEEEEEEeCCCC--EEEEE
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL---K----EFSGFKSNS------------GLVKAIIISGDSN--KIFTG 179 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~---~----~~~~~~~h~------------~~V~~l~~s~~~~--~l~s~ 179 (473)
.+-|.++.++ |++||||..+|.|.++.-. + -...++.|. ..|..|.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4556777776 9999999999999999532 1 122344442 4689999988764 56666
Q ss_pred eCCCeEEEEeCCCCCeeeEEee----ccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC
Q 012007 180 HQDGKIRIWKVSRKNASVHKRV----GSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW 255 (473)
Q Consensus 180 ~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~ 255 (473)
+.|.+|++|.+........... ........+......+.........+......|.-.|.+|.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 8899999999876544331000 00000111111111122222222333344446888999999999999998876
Q ss_pred CCCEEEEEcCCCe-e--eEEeecC-----CCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCccee----------
Q 012007 256 DKTLKVWRISDCK-C--LESINAH-----DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHC---------- 315 (473)
Q Consensus 256 dg~v~vwd~~~~~-~--~~~~~~~-----~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~---------- 315 (473)
|=.|.+|+++--. . +-.++.+ ...|++..|+|.. .++-.+..|+|++.|++....-....
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 6789999986322 1 2223333 2467788898875 78888899999999998321110000
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc------------ceE-----EEEEecCC
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK------------MAV-----LCLAAAGN 378 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~v-----~~~~~~~~ 378 (473)
....+.+--..|..+.|+++|+++++-.. -+|++||+.....+.....-|. ..| ++++-++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 01112223356888999999999987643 5899999976555555544443 111 34444566
Q ss_pred EEEEEeCCCcEEEEecCC
Q 012007 379 LVFSGSADRNICLWRREE 396 (473)
Q Consensus 379 ~l~s~~~dg~i~iwd~~~ 396 (473)
++++|+..+.+++|+...
T Consensus 343 ~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred eEecccccceEEEecCCC
Confidence 999999999999999543
No 213
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=8.1e-15 Score=132.50 Aligned_cols=256 Identities=15% Similarity=0.221 Sum_probs=186.1
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
...+..|.+.|..|.|+..|..|++|+.|..|.+||+........+.- +
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-------------------------------G 183 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-------------------------------G 183 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc-------------------------------c
Confidence 456778999999999999999999999999999999998876555443 3
Q ss_pred ccCCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCC-Cee--eEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCc
Q 012007 234 HYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISD-CKC--LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~-~~~--~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~ 306 (473)
|...|..-.|-| +..-+++++.||.|++=.+.. +.+ ...+..|.+.|..++.-|+. .|++++.|+.+.-+|++
T Consensus 184 H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr 263 (559)
T KOG1334|consen 184 HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR 263 (559)
T ss_pred cccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence 888888888888 446789999999999887643 322 34456799999999998886 89999999999999998
Q ss_pred ccCCCcceeeeeeeccCCc---cEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccc------cc-----eeecCcceEE
Q 012007 307 LQGKGTKHCLAQVLLKHEN---AVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSH------GG-----VLRGHKMAVL 371 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~------~~-----~~~~~~~~v~ 371 (473)
......... ....+.. ....++.+|.. ..+++++.|..+++||.+.-... .. ........|+
T Consensus 264 ~~~pa~~~~---cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT 340 (559)
T KOG1334|consen 264 QDVPAEKFV---CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT 340 (559)
T ss_pred cCCccceee---eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence 654322211 2223333 56889999965 48999999999999998642111 11 1112344567
Q ss_pred EEEec--CCEEEEEeCCCcEEEEecCCCCc---------eeEE-EEecCCCC--ceeEEEEe-cCCCCCcccccCCCccE
Q 012007 372 CLAAA--GNLVFSGSADRNICLWRREESGA---------HSCL-AVLTGHTG--PVKCLAVE-EDRDHDHEYHQKGDQRW 436 (473)
Q Consensus 372 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---------~~~~-~~~~~h~~--~V~~l~~~-~~~~~~~~~~~~~~~~~ 436 (473)
|+.+. +.-|+++..|-.|++|+-..+.- ...+ ..++||.. .|.++-|- |...
T Consensus 341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE------------- 407 (559)
T KOG1334|consen 341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE------------- 407 (559)
T ss_pred eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc-------------
Confidence 77654 66667777788899995443211 0222 33788854 57777665 4444
Q ss_pred EEEEeeCCCcEEEEEcCCCC
Q 012007 437 TVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 437 ~l~s~s~Dg~v~iW~i~~~~ 456 (473)
++++|+.=|.|.||+-..++
T Consensus 408 yVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 408 YVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred eEEecCccceEEEEecchhH
Confidence 89999999999999977654
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=1.9e-15 Score=135.67 Aligned_cols=230 Identities=14% Similarity=0.201 Sum_probs=181.9
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
.-.-..+.++.+|++|+.|+.-|.|-.+|+.+........ -...|.+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~---------------------------------v~Etv~D 175 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN---------------------------------VMETVRD 175 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee---------------------------------hhhhhhh
Confidence 3345788999999999999999999999999887655443 4567888
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
+.|-.+.+++|++- ...++||| ..|..++.++.|. .|..+.|.|.. +|++++..|.++.-|+..++ ++..
T Consensus 176 v~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk------lVa~ 246 (545)
T KOG1272|consen 176 VTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGK------LVAS 246 (545)
T ss_pred hhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhh------hhHH
Confidence 99988888888776 57899999 5778888888664 68899999998 77788899999999997543 4555
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCC
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
+....+.+..|+-+|-...+-+|..+|+|.+|.......+. .+..|.++|.+++. +|.|++|.+.|..++|||++.
T Consensus 247 ~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv-KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~- 324 (545)
T KOG1272|consen 247 IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV-KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN- 324 (545)
T ss_pred HHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH-HHHhcCCCcceEEECCCCcEEeecccccceeEeeecc-
Confidence 66667888999999999999999999999999988765554 44568988877775 499999999999999999998
Q ss_pred CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 398 GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 398 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
...+.++.. .-+...++++..+ +||.+ ....|.||.=
T Consensus 325 --~~ql~t~~t-p~~a~~ls~Sqkg--------------lLA~~-~G~~v~iw~d 361 (545)
T KOG1272|consen 325 --FYQLHTYRT-PHPASNLSLSQKG--------------LLALS-YGDHVQIWKD 361 (545)
T ss_pred --ccccceeec-CCCcccccccccc--------------ceeee-cCCeeeeehh
Confidence 333333333 3457888998876 34444 4457999964
No 215
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=6.4e-13 Score=116.51 Aligned_cols=238 Identities=16% Similarity=0.165 Sum_probs=166.7
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
...+..+.|+.+...|..|+.|| .++++.+.......... ....|-.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~--------------------------------~~~~IvE 51 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDT--------------------------------EGVSIVE 51 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccC--------------------------------CCeEEEE
Confidence 45677888999998999999998 57787765433111000 1122334
Q ss_pred EEEcCCCCEEEEEeCC--CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 241 LSLNAEQGLLYSGSWD--KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 241 l~~~~~~~~l~s~s~d--g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
+-|+. .+++..+.+ +.+++++++.+..+..+. ....|.++.+..+.+++.- . ..|.|||++.... ...+.
T Consensus 52 mLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~RLvV~L-e-e~IyIydI~~Mkl---LhTI~ 123 (391)
T KOG2110|consen 52 MLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRKRLVVCL-E-ESIYIYDIKDMKL---LHTIE 123 (391)
T ss_pred eeccc--ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccceEEEEE-c-ccEEEEeccccee---ehhhh
Confidence 44543 455555544 349999998888887776 4567889988766544433 3 3499999974321 11122
Q ss_pred eeccCCccEEEEEEccCCCEEEEe--CCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCc-EEEEe
Q 012007 319 VLLKHENAVTALAVNQESAVVYCG--SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRN-ICLWR 393 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~-i~iwd 393 (473)
....+...+.++++++.+.+|+-- ...|.|.+||..+- .....+..|.+.+.|+++ +|.+||++++.|+ |+||.
T Consensus 124 t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~ 202 (391)
T KOG2110|consen 124 TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFS 202 (391)
T ss_pred ccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEE
Confidence 233456668888888888888763 34689999999874 444667799998877765 6999999999997 78999
Q ss_pred cCCCCceeEEEEecCC--CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 394 REESGAHSCLAVLTGH--TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+.++ +.+..++.- ...|.+|+|+++.+ +|++.|..++|.|+++....
T Consensus 203 v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~-------------~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 203 VPEG---QKLYEFRRGTYPVSIYSLSFSPDSQ-------------FLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred cCCc---cEeeeeeCCceeeEEEEEEECCCCC-------------eEEEecCCCeEEEEEecccc
Confidence 9884 555555432 34689999999999 89999999999999998654
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=7.5e-14 Score=135.28 Aligned_cols=192 Identities=11% Similarity=0.079 Sum_probs=129.3
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC---CCEEEEEcCCCee--eEEeecCCCceeEEEEcCCC-EEEEE-eCCCcEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDCKC--LESINAHDDAINSVVAGFDS-LVFTG-SADGTVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d---g~v~vwd~~~~~~--~~~~~~~~~~v~~l~~~~~~-~l~s~-~~dg~i~vwd~~ 306 (473)
|...+....|+|+|+.|+.++.+ ..|++||+.+++. +..+.+ ....+.|+|++ .|+.+ +.+|.+.||.++
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMG 278 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEE
Confidence 67789999999999999888754 3699999988754 333333 34468999998 55554 568877777544
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeC
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
.... ....+..+...+....|+|||+.|+.. ..+|...||++.........+ .+......++++|++|+..+.
T Consensus 279 ~~~~-----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 279 ANGG-----TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRGYSAQISADGKTLVMING 352 (429)
T ss_pred CCCC-----CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCCCCccCCCCCCEEEEEcC
Confidence 2111 123344566678899999999976654 467888888765322211222 232233567889999988877
Q ss_pred CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 386 DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
++ +.+||+.++.. ..+ ...+ ....+.|+|+++ +|+.++.++.+.+|.+.
T Consensus 353 ~~-i~~~Dl~~g~~-~~l--t~~~--~~~~~~~sPdG~-------------~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 353 DN-VVKQDLTSGST-EVL--SSTF--LDESPSISPNGI-------------MIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CC-EEEEECCCCCe-EEe--cCCC--CCCCceECCCCC-------------EEEEEEcCCCceEEEEE
Confidence 65 66699987432 111 1222 235688999998 78888889999888864
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=4.5e-12 Score=109.16 Aligned_cols=228 Identities=15% Similarity=0.256 Sum_probs=148.4
Q ss_pred EEEe--cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEE-EeCC------CeEEEEeCCCCCee
Q 012007 128 SLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFT-GHQD------GKIRIWKVSRKNAS 196 (473)
Q Consensus 128 ~~~~--~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~d------g~i~vwd~~~~~~~ 196 (473)
++++ |...+++|.++| .+||+.. ++...-..+.+.+.-+..--..++|+- ||.+ ..|.|||=......
T Consensus 10 svs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i 88 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCI 88 (346)
T ss_pred EEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEE
Confidence 3554 455777777765 7999755 222222222222222222223345553 3332 46999993333322
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC-CCeeeEEeec
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS-DCKCLESINA 275 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~ 275 (473)
. .+....+|..+.+.++ .+++.- .+.|+||... +.+.++.+..
T Consensus 89 ~---------------------------------el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 89 I---------------------------------ELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred E---------------------------------EEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeec
Confidence 2 2236788999999764 566655 5789999987 5566666653
Q ss_pred CC--CceeEEEEcCCC-EEE-EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc-EEE
Q 012007 276 HD--DAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL-VNF 350 (473)
Q Consensus 276 ~~--~~v~~l~~~~~~-~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~-i~i 350 (473)
.. ..+.+++-..+. +|+ =|-.-|.|+|-|+..... ........|.+.|.|++.+.+|.++|+++..|+ |+|
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~----~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI 208 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP----NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRI 208 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc----CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEE
Confidence 22 223333322233 333 456679999999974321 134678899999999999999999999999996 799
Q ss_pred EecCCcccccceeecCc-ceEEE--EEecCCEEEEEeCCCcEEEEecCC
Q 012007 351 WECEKHLSHGGVLRGHK-MAVLC--LAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 351 wd~~~~~~~~~~~~~~~-~~v~~--~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
||..++..+....+|-. ..+.| ++++..+|++++..|+|+||.++.
T Consensus 209 Fdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 209 FDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 99998877765555533 34444 556799999999999999999875
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=1.6e-12 Score=111.80 Aligned_cols=243 Identities=13% Similarity=0.239 Sum_probs=159.2
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
....++|+.|...++.|..+| .+||+.+--+....... +...+.-+.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~--------------------------------~~~G~~~ve 53 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF--------------------------------IDGGFKIVE 53 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc--------------------------------ccCchhhhh
Confidence 345699999998888887776 89999876332211111 111111111
Q ss_pred EcCCCCEEE-EEeCC------CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCccee
Q 012007 243 LNAEQGLLY-SGSWD------KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 243 ~~~~~~~l~-s~s~d------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
.--..++|+ +|+.+ ..|.|||=...+++.++. ...+|.++.+.++..+++ .++.|.||.....- ....
T Consensus 54 MLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~--k~l~ 128 (346)
T KOG2111|consen 54 MLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVV--LENKIYVYTFPDNP--KLLH 128 (346)
T ss_pred HhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEE--ecCeEEEEEcCCCh--hhee
Confidence 111223333 33322 469999977777887776 567899999988764443 46889999875221 1111
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecCCccc-ccceeecCcceEEEEEe--cCCEEEEEeCCCc-EE
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHLS-HGGVLRGHKMAVLCLAA--AGNLVFSGSADRN-IC 390 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~-i~ 390 (473)
...+ ......+.+++-+.+..+|+. |-.-|.|.|-|+..... .......|...|.|++- +|.++|+++..|+ |+
T Consensus 129 ~~et-~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 129 VIET-RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred eeec-ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence 1111 121223444443334455555 44568999999976444 34678899999988875 5999999999997 89
Q ss_pred EEecCCCCceeEEEEecC--CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 391 LWRREESGAHSCLAVLTG--HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
|||..++ ..+..++. ....|.+|+|+|+.. +|+.+|+-|+|.|+.+.......+
T Consensus 208 IFdt~~g---~~l~E~RRG~d~A~iy~iaFSp~~s-------------~LavsSdKgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 208 IFDTEDG---TLLQELRRGVDRADIYCIAFSPNSS-------------WLAVSSDKGTLHIFSLRDTENTED 263 (346)
T ss_pred EEEcCCC---cEeeeeecCCchheEEEEEeCCCcc-------------EEEEEcCCCeEEEEEeecCCCCcc
Confidence 9999995 44444432 234799999999998 899999999999999987554333
No 219
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3.6e-13 Score=130.84 Aligned_cols=232 Identities=11% Similarity=0.039 Sum_probs=148.5
Q ss_pred CcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCc
Q 012007 143 KNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQD---GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK 218 (473)
Q Consensus 143 g~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (473)
..|.+||.. .....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++......
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~------------------ 245 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS------------------ 245 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc------------------
Confidence 368888865 3345566677889999999999999987743 469999998765322111
Q ss_pred ceEEEeecceeeEeeccCCeeEEEEcCCCCEEE-EEeCCC--CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEE
Q 012007 219 NYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY-SGSWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTG 294 (473)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~ 294 (473)
......+..|+|+|+.|+ +.+.+| .|++||+.+++.. .+..+........|+|++ .|+.+
T Consensus 246 ---------------~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~ 309 (433)
T PRK04922 246 ---------------FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFT 309 (433)
T ss_pred ---------------CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEE
Confidence 223345789999998775 445555 5999999887653 444455555678999998 45544
Q ss_pred e-CCCc--EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC---cEEEEecCCcccccceeecCcc
Q 012007 295 S-ADGT--VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG---LVNFWECEKHLSHGGVLRGHKM 368 (473)
Q Consensus 295 ~-~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~ 368 (473)
+ .+|. |.++|+..+. . ..+..+.......+|+|+|++|+..+.++ .|.+||+.++... ....+...
T Consensus 310 sd~~g~~~iy~~dl~~g~---~----~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~ 381 (433)
T PRK04922 310 SDRGGRPQIYRVAASGGS---A----ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLD 381 (433)
T ss_pred ECCCCCceEEEEECCCCC---e----EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCC
Confidence 4 4555 4445543211 1 11112223345689999999988765433 5899998765432 22222222
Q ss_pred eEEEEEecCCEEEEEeCC---CcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 369 AVLCLAAAGNLVFSGSAD---RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 369 ~v~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
.-..++++|++|+..+.+ +.|.++++.. .....+..+.+.+...+|+|
T Consensus 382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g----~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 382 ESPSFAPNGSMVLYATREGGRGVLAAVSTDG----RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCC----CceEEcccCCCCCCCCccCC
Confidence 335788999988776653 3577777754 23344445556677788876
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=2.9e-13 Score=119.46 Aligned_cols=249 Identities=11% Similarity=0.139 Sum_probs=176.3
Q ss_pred EEEEeeCCCcEEEeeCCcc--------ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccc
Q 012007 135 LLYTGSDSKNIRVWKNLKE--------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPT 206 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~~--------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 206 (473)
.|...+.|..+..+...+. +.......+.|..++.... .|++|-.+|.+.+|....+.....
T Consensus 71 vl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg--~Litc~~sG~l~~~~~k~~d~hss-------- 140 (412)
T KOG3881|consen 71 VLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG--TLITCVSSGNLQVRHDKSGDLHSS-------- 140 (412)
T ss_pred EeeccccCcccccccccCCccccccccccccccccccccchhhcCC--EEEEEecCCcEEEEeccCCccccc--------
Confidence 4544445556665543321 2233445677877777543 899999999999999986643210
Q ss_pred cceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCC--CCEEEEEcCCCeeeEEeecCC------
Q 012007 207 FKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWD--KTLKVWRISDCKCLESINAHD------ 277 (473)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~d--g~v~vwd~~~~~~~~~~~~~~------ 277 (473)
...+......+..+.-++.. .++++|+.. ..+.+||+++.+.+.+-+.-.
T Consensus 141 ---------------------~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 141 ---------------------KLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL 199 (412)
T ss_pred ---------------------cceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc
Confidence 01111233455566666644 455668888 789999999886665543211
Q ss_pred ---CceeEEEEcCC--C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 278 ---DAINSVVAGFD--S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 278 ---~~v~~l~~~~~--~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
-.++++.|.++ . .|++++.-+.+++||.+. ...++..+.-.+.+++++...|.++++++|..-|.+..|
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~-----qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~F 274 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH-----QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKF 274 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCcc-----cCcceeEeccccCcceeeeecCCCcEEEEecccchhhee
Confidence 13556677666 3 899999999999999983 444566666678899999999999999999999999999
Q ss_pred ecCCcccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 352 ECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
|++++......+.+..+.+..+... ..+|++++-|..|+|+|+.+ ..++.... -...+++|.+.++-+
T Consensus 275 D~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt---rkll~kvY-vKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 275 DLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT---RKLLHKVY-VKSRLTFILLRDDVN 344 (412)
T ss_pred cccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc---chhhhhhh-hhccccEEEecCCcc
Confidence 9999888877788889999888765 46999999999999999998 33333221 234567777766543
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=5.1e-13 Score=129.29 Aligned_cols=246 Identities=11% Similarity=0.073 Sum_probs=152.5
Q ss_pred cCCEEEEeeCC--CcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCeeeEEeecccc
Q 012007 132 SGDLLYTGSDS--KNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQD---GKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 132 ~g~~l~tg~~d--g~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
++++.++.... ..|.+||.. .....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++......
T Consensus 163 ~~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~----- 237 (427)
T PRK02889 163 STRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN----- 237 (427)
T ss_pred ccEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-----
Confidence 34444444333 356666654 3334555677889999999999999877643 359999998775432211
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE-EEeCCCCEEEEEc--CCCeeeEEeecCCCceeE
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKTLKVWRI--SDCKCLESINAHDDAINS 282 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~v~vwd~--~~~~~~~~~~~~~~~v~~ 282 (473)
....+.+..|+|||+.|+ +.+.++...||.+ ..+. +..+..+......
T Consensus 238 ----------------------------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~ 288 (427)
T PRK02889 238 ----------------------------FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTE 288 (427)
T ss_pred ----------------------------CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcC
Confidence 223456789999999876 5677787666654 4443 4455555555667
Q ss_pred EEEcCCC-EEE-EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC---cEEEEecCCcc
Q 012007 283 VVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG---LVNFWECEKHL 357 (473)
Q Consensus 283 l~~~~~~-~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~ 357 (473)
..|+|++ .|+ +...+|...+|.+..... .. ..+..........+|+|+|++|+..+.++ .|.+||+.++.
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~---~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AA---QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCC--ce---EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 8899998 454 444457777887653221 11 11111122344678999999988766554 59999987654
Q ss_pred cccceeecCcceEEEEEecCCEEEEEeCCC-c--EEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 358 SHGGVLRGHKMAVLCLAAAGNLVFSGSADR-N--ICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
.. ....+.......++++|++|+.++.++ . +.+.++.. .....+..+.+.+...+|+|-
T Consensus 364 ~~-~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g----~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 364 VT-ALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG----RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eE-EccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCC----CceEEeecCCCCCCCCccCCC
Confidence 32 222222334467889999888777554 3 44445532 334444456677788888874
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.4e-12 Score=112.60 Aligned_cols=291 Identities=13% Similarity=0.161 Sum_probs=176.1
Q ss_pred EEEEEecCC--EEEEeeCCCcEEEeeCC-cccccccc-CcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEE-
Q 012007 126 IYSLAASGD--LLYTGSDSKNIRVWKNL-KEFSGFKS-NSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHK- 199 (473)
Q Consensus 126 V~~~~~~g~--~l~tg~~dg~i~vwd~~-~~~~~~~~-h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~- 199 (473)
+.-++++.. -+|++..|-.|++||.. +....++. -...|+|++|-|.+ +-|+.|+..| |.+|..+........
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~ 179 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNI 179 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccccc
Confidence 344555544 47788889999999855 33334443 24679999999975 5677777665 889987654221110
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCCCeeeEEeecCCC
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINAHDD 278 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~ 278 (473)
..... .......-.+| ..|++|.|.+||..+++++. |..|.|||..++..+.......+
T Consensus 180 ~~~s~-------------------~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg 239 (445)
T KOG2139|consen 180 RMMST-------------------HHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG 239 (445)
T ss_pred ccccc-------------------cchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence 00000 00000011123 78999999999999999984 56799999999988776655667
Q ss_pred ceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc
Q 012007 279 AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357 (473)
Q Consensus 279 ~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 357 (473)
.+.-+.|+|++ +|+++.-|+..++|+.. ..........+ .+.|...+|+|+|++|+..+. |.-++|.+.-..
T Consensus 240 g~slLkwSPdgd~lfaAt~davfrlw~e~-----q~wt~erw~lg-sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~ 312 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAATCDAVFRLWQEN-----QSWTKERWILG-SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDG 312 (445)
T ss_pred ceeeEEEcCCCCEEEEecccceeeeehhc-----ccceecceecc-CCceeeeeecCCCCEEEEEEc-CCceEEEEeecC
Confidence 88999999998 89999999999999654 22222222222 348999999999987665443 233444432100
Q ss_pred cc-------------------------cceeecCcceEEEEEecCCEEEEEeCCC--------cEEEEecCCCCceeEEE
Q 012007 358 SH-------------------------GGVLRGHKMAVLCLAAAGNLVFSGSADR--------NICLWRREESGAHSCLA 404 (473)
Q Consensus 358 ~~-------------------------~~~~~~~~~~v~~~~~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~ 404 (473)
+. ...+-+.....+++.|.|.+|++.-..+ .|.+||.+.........
T Consensus 313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~ 392 (445)
T KOG2139|consen 313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSY 392 (445)
T ss_pred CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEe
Confidence 00 0011122223345556699999876544 37778877633222221
Q ss_pred EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 405 VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 405 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.-......-.-|.|+|..+ +++ +|..+=..|.+.-|.+.-
T Consensus 393 cg~i~ge~P~~IsF~pl~n---------~g~-lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 393 CGMIGGEYPAYISFGPLKN---------EGR-LLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred cccccCCCCceEEeeeccc---------CCc-EEEEEeccCceEeeeeEE
Confidence 1011112245677777543 122 444444567777777653
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=3.4e-12 Score=119.83 Aligned_cols=269 Identities=10% Similarity=0.109 Sum_probs=166.5
Q ss_pred CCEE-EEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 133 GDLL-YTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 133 g~~l-~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
++++ ++-..+|.|.|.|.. +.+..+......-..+.|++||+++++++.||.|.++|+.+.+.......
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-------- 76 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-------- 76 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---------
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--------
Confidence 3444 455668999999975 44556655444445578999999999999999999999999987665553
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecC-------CCcee
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAH-------DDAIN 281 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~-------~~~v~ 281 (473)
......+++++||++++++. ..+.+.++|.++.+.+..+... ...+.
T Consensus 77 -------------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~ 131 (369)
T PF02239_consen 77 -------------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVA 131 (369)
T ss_dssp -------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EE
T ss_pred -------------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCce
Confidence 34467899999999999876 6899999999999999888643 23566
Q ss_pred EEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCccc
Q 012007 282 SVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLS 358 (473)
Q Consensus 282 ~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~ 358 (473)
.+..++.. ++++.-..+.|-+.|.... ..+...............|+|++++++++ ..+..|-++|.++...
T Consensus 132 aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-----~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 132 AIVASPGRPEFVVNLKDTGEIWVVDYSDP-----KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp EEEE-SSSSEEEEEETTTTEEEEEETTTS-----SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred eEEecCCCCEEEEEEccCCeEEEEEeccc-----cccceeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 77776665 4445555688888886532 12222333345567789999999987664 5567899999887544
Q ss_pred ccceee---cCcceEEE-----------EEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCC
Q 012007 359 HGGVLR---GHKMAVLC-----------LAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDH 424 (473)
Q Consensus 359 ~~~~~~---~~~~~v~~-----------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 424 (473)
...... .|...... ....+.+.++.-....+.+||... ++.++.+....++ .-+..+|+++
T Consensus 207 v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~---wkvv~~I~~~G~g-lFi~thP~s~- 281 (369)
T PF02239_consen 207 VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA---WKVVKTIPTQGGG-LFIKTHPDSR- 281 (369)
T ss_dssp EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB---TSEEEEEE-SSSS---EE--TT-S-
T ss_pred EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc---CeEEEEEECCCCc-ceeecCCCCc-
Confidence 322211 23323322 222333332332334566777776 7788888776666 7888899998
Q ss_pred CcccccCCCccEEEEEe----eCCCcEEEEEcCCCC
Q 012007 425 DHEYHQKGDQRWTVYSG----SLDKSVKVWRVSEHA 456 (473)
Q Consensus 425 ~~~~~~~~~~~~~l~s~----s~Dg~v~iW~i~~~~ 456 (473)
+++.. ...++|.++|..+.+
T Consensus 282 ------------~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 282 ------------YVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp ------------EEEEE-TT-SSHT-EEEEECCGTE
T ss_pred ------------cEEeeccCCCCCceEEEEECcCcc
Confidence 56555 556899999998873
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=3.6e-13 Score=118.85 Aligned_cols=213 Identities=11% Similarity=0.145 Sum_probs=159.3
Q ss_pred eeeeecccEEEEEecCCEEEEeeCCCcEEEeeCC------ccccccccCcccEEEEEEeCCCC-EEEEEeCC--CeEEEE
Q 012007 118 SIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIISGDSN-KIFTGHQD--GKIRIW 188 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~------~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~d--g~i~vw 188 (473)
+.....+.|..+......|++|-.+|.+.+|... ..+..+..+ ..+..+.-++... .+++||.. ..+.+|
T Consensus 100 ~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred ccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence 3344567777888777788999999999999755 222233333 4466666666554 45568888 889999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC--CCEEEEEeCCCCEEEEEcCC
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd~~~ 266 (473)
|++..+.+. .....+.. .+ -+.-.-.++++.|-+. ...|++++.-+.|++||.+.
T Consensus 179 dle~~~qiw--~aKNvpnD------------~L---------~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~ 235 (412)
T KOG3881|consen 179 DLEQSKQIW--SAKNVPND------------RL---------GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH 235 (412)
T ss_pred ecccceeee--eccCCCCc------------cc---------cceeeeeeccceecCCCCCceEEEEecceeEEEecCcc
Confidence 998774332 22222110 00 0012235677888887 78999999999999999986
Q ss_pred C-eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC
Q 012007 267 C-KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 267 ~-~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
+ +++..+..-..+++++...|++ ++++|..-|.+..+|++ ....+...+.+..+.|++|..+|.+.+|++++.
T Consensus 236 qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r-----~~kl~g~~~kg~tGsirsih~hp~~~~las~GL 310 (412)
T KOG3881|consen 236 QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR-----GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL 310 (412)
T ss_pred cCcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc-----CceeeccccCCccCCcceEEEcCCCceEEeecc
Confidence 5 5778888788899999998887 89999999999999998 444455567888999999999999999999999
Q ss_pred CCcEEEEecCCcccc
Q 012007 345 DGLVNFWECEKHLSH 359 (473)
Q Consensus 345 dg~i~iwd~~~~~~~ 359 (473)
|..|+|+|+++...+
T Consensus 311 DRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 311 DRYVRIHDIKTRKLL 325 (412)
T ss_pred ceeEEEeecccchhh
Confidence 999999999984443
No 225
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.56 E-value=2.8e-14 Score=119.35 Aligned_cols=156 Identities=20% Similarity=0.377 Sum_probs=124.8
Q ss_pred ecccEEEEEec---CC--EEEEeeCCCcEEEeeCCcc------------ccccccCcccEEEEEEeCCCCEEEEEeCCCe
Q 012007 122 KEGHIYSLAAS---GD--LLYTGSDSKNIRVWKNLKE------------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGK 184 (473)
Q Consensus 122 h~~~V~~~~~~---g~--~l~tg~~dg~i~vwd~~~~------------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 184 (473)
..|.|.|+.++ +. +|++|-++|.|.+||.... ......|..+|.++.+.+.-..=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 45778888854 33 6778888999999996532 3345679999999999877666778888889
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
+..|+++........... ..+ ..-.|..+.+-||++.++++++|+.|+||..
T Consensus 229 l~~~Sl~~s~gslq~~~e---------------------------~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKE---------------------------ITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSW 280 (323)
T ss_pred ceeeeeccccCcccccce---------------------------EEe-cCCCccceEEccCCcEEeecccCCcEEEEEe
Confidence 999998765322111100 000 3345788899999999999999999999999
Q ss_pred CCCeeeEEeecCCCceeEEEEcCC-CEEEEEeCCCcEEEEeC
Q 012007 265 SDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRR 305 (473)
Q Consensus 265 ~~~~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~ 305 (473)
++.+++..++-|.+.|++++|+|+ +++++++.|+.|.+|++
T Consensus 281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999 69999999999999986
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=2.4e-13 Score=124.54 Aligned_cols=192 Identities=16% Similarity=0.178 Sum_probs=132.6
Q ss_pred CCEEEEeeCCCcEEEeeCCc-ccccc-----ccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 133 GDLLYTGSDSKNIRVWKNLK-EFSGF-----KSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~-~~~~~-----~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
+--|..|-.-|.|.+.|... .+..+ .-.+..|+|+.|-|.+ ..++.+..+|.+.+||..-...........+.
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k 264 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK 264 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence 44577777778888887542 22221 1134789999998854 46666788999999987322111111111111
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEE
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA 285 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~ 285 (473)
....+...... -...+.....+.--...|..++|+|||++||+.+.||.++|+|..+.+.+..++.--+...|++|
T Consensus 265 ~~~~f~i~t~k----sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 265 DGDQFAILTSK----SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred CCCeeEEeeee----ccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 10000000000 00011122223334568999999999999999999999999999998888888877789999999
Q ss_pred cCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc
Q 012007 286 GFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 286 ~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
+||+ +|++|+.|..|.||.+. ....+..-.+|++.|..++|.|
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~------erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFE------ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cCCccEEEecCCcceEEEEEec------cceEEEeccccccceeeEeecc
Confidence 9999 99999999999999985 4456778899999999999997
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.8e-12 Score=112.17 Aligned_cols=237 Identities=14% Similarity=0.189 Sum_probs=157.3
Q ss_pred cccEEEEEec---CCEEEEeeCCCcEEEeeCCcc----------------ccccccCcccEEEEEEeCCCCEEEEEeC-C
Q 012007 123 EGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKE----------------FSGFKSNSGLVKAIIISGDSNKIFTGHQ-D 182 (473)
Q Consensus 123 ~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~~~----------------~~~~~~h~~~V~~l~~s~~~~~l~s~~~-d 182 (473)
+..|.|+++- +.-|+.|+.. -|.+|..... +....+| .+|+.++|.+||..|++++. |
T Consensus 140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 3457888863 6789999985 5899953211 1122334 68999999999999999886 5
Q ss_pred CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEE
Q 012007 183 GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262 (473)
Q Consensus 183 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vw 262 (473)
..|.|||.+++........ ..+.++-+.|+||+.+|+++.-|+..++|
T Consensus 218 ssi~iWdpdtg~~~pL~~~--------------------------------glgg~slLkwSPdgd~lfaAt~davfrlw 265 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPK--------------------------------GLGGFSLLKWSPDGDVLFAATCDAVFRLW 265 (445)
T ss_pred ceEEEEcCCCCCccccccc--------------------------------CCCceeeEEEcCCCCEEEEecccceeeee
Confidence 7899999999876544321 44678889999999999999999999999
Q ss_pred EcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCc---------ceeeeeee-----cc----
Q 012007 263 RISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGT---------KHCLAQVL-----LK---- 322 (473)
Q Consensus 263 d~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~---------~~~~~~~~-----~~---- 322 (473)
+..............+.|...+|+|+| +|++++..- ++|.+...++.. ...+...+ ..
T Consensus 266 ~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l 343 (445)
T KOG2139|consen 266 QENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRL 343 (445)
T ss_pred hhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCccc
Confidence 765443333333445589999999999 555555444 444443222111 00111111 11
Q ss_pred CCccEEEEEEccCCCEEEEeCCCC--------cEEEEecCCccccc----ceeecCcceEEEEEe---cCCEEEEEeCCC
Q 012007 323 HENAVTALAVNQESAVVYCGSSDG--------LVNFWECEKHLSHG----GVLRGHKMAVLCLAA---AGNLVFSGSADR 387 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~---~~~~l~s~~~dg 387 (473)
-.+.+.+++|.|.|.+|++....+ .|.+||.+...... ....+..-...+|.+ ++.+|..+=..|
T Consensus 344 ~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTG 423 (445)
T KOG2139|consen 344 CCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTG 423 (445)
T ss_pred ccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccC
Confidence 145788999999999999876544 36778876532221 122233334456665 377888887888
Q ss_pred cEEEEecC
Q 012007 388 NICLWRRE 395 (473)
Q Consensus 388 ~i~iwd~~ 395 (473)
.|.-|++.
T Consensus 424 riq~ypl~ 431 (445)
T KOG2139|consen 424 RIQRYPLT 431 (445)
T ss_pred ceEeeeeE
Confidence 88888764
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.7e-12 Score=124.90 Aligned_cols=231 Identities=7% Similarity=-0.027 Sum_probs=148.3
Q ss_pred cEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcc
Q 012007 144 NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ---DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKN 219 (473)
Q Consensus 144 ~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (473)
.|.+||.. .....+..|...+.+.+|+|||+.|+..+. +..|.+||+.++......
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~-------------------- 242 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG-------------------- 242 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee--------------------
Confidence 67777754 334556678889999999999999888764 468999999877542211
Q ss_pred eEEEeecceeeEeeccCCeeEEEEcCCCCEEE-EEeCCCC--EEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEe
Q 012007 220 YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS 295 (473)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~--v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~ 295 (473)
.+...+...+|+|||+.|+ +.+.++. |++||+.+++. ..+..+........|+|++ .|+..+
T Consensus 243 -------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s 308 (435)
T PRK05137 243 -------------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFES 308 (435)
T ss_pred -------------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEE
Confidence 1445667889999998775 5555555 77789887765 4455555666778999998 455444
Q ss_pred -CCC--cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC---CcEEEEecCCcccccceeecCcce
Q 012007 296 -ADG--TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD---GLVNFWECEKHLSHGGVLRGHKMA 369 (473)
Q Consensus 296 -~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 369 (473)
.+| .|.+||+..+. ...+..+...+....|+|+|+.|+....+ ..|.+||+...... ....+....
T Consensus 309 ~~~g~~~Iy~~d~~g~~-------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~~~~~~ 380 (435)
T PRK05137 309 DRSGSPQLYVMNADGSN-------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTSGFLVE 380 (435)
T ss_pred CCCCCCeEEEEECCCCC-------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccCCCCCC
Confidence 344 56677764221 11222234456678899999998876543 35888887543321 122223334
Q ss_pred EEEEEecCCEEEEEeCC------CcEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 370 VLCLAAAGNLVFSGSAD------RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 370 v~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
...+++||++|+..+.+ ..+.++|+.... ...+. ..+.+...+|+|-
T Consensus 381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~----~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN----EREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc----eEEcc-CCCCccCcccCCC
Confidence 46788999988765543 257777776532 12332 2344667777763
No 229
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.55 E-value=8.1e-13 Score=130.26 Aligned_cols=196 Identities=18% Similarity=0.249 Sum_probs=157.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCce-e-E--EEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI-N-S--VVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v-~-~--l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
.|....+..+...++.++.+..+.+||...+..+..+....... . + +-.+++. ++++|+.-+.|.+|+......
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~- 167 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK- 167 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-
Confidence 34445555677889999999999999998887776665433211 1 1 1234444 899999999999999872221
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEE
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICL 391 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~i 391 (473)
...+.+|++.|.++.++.+|+++++.+.|..+++|++++........-+|...+....+..+.+++++.|-+.++
T Consensus 168 -----p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrv 242 (967)
T KOG0974|consen 168 -----PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRV 242 (967)
T ss_pred -----cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEE
Confidence 126889999999999999999999999999999999999877776778999999888877779999999999999
Q ss_pred EecCCCCceeEEEEecCCCC-ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 392 WRREESGAHSCLAVLTGHTG-PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 392 wd~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
|+.+. ..+..+.+|.+ .|..++..++.. .++|++.|+.+++|++...
T Consensus 243 W~~~~----~~l~~y~~h~g~~iw~~~~~~~~~-------------~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNG----TQLEVYDEHSGKGIWKIAVPIGVI-------------IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eeccc----ceehhhhhhhhcceeEEEEcCCce-------------EEEeeccCcchhhhhhhcc
Confidence 97765 45557888854 689999998887 8999999999999998754
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.53 E-value=2.8e-12 Score=110.81 Aligned_cols=272 Identities=13% Similarity=0.180 Sum_probs=173.0
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
...+++++|+++|+++.- .+.|-|... .+..+...-..|.-|.|..|..+++ ....|+.|.+|++...+-.....
T Consensus 12 ~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId-- 88 (447)
T KOG4497|consen 12 PFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID-- 88 (447)
T ss_pred CceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec--
Confidence 345899999999999875 666766542 1222222245688899998886655 45678899999998765433222
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC-EEEEEeCCCCEEEEEcCCCeeeEEeecCCCcee
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKCLESINAHDDAIN 281 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~ 281 (473)
.....+..++|+|+|+ +|.+...|-.|.+|.+.+.+... ++-.+..+.
T Consensus 89 ------------------------------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~k 137 (447)
T KOG4497|consen 89 ------------------------------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVK 137 (447)
T ss_pred ------------------------------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCce
Confidence 1556789999999995 56666788899999998766543 333344567
Q ss_pred EEEEcCCCEEEEE-eC------------------------------------CCcEEEEeCcccCCCcceeeeeeeccCC
Q 012007 282 SVVAGFDSLVFTG-SA------------------------------------DGTVKVWRRELQGKGTKHCLAQVLLKHE 324 (473)
Q Consensus 282 ~l~~~~~~~l~s~-~~------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 324 (473)
.++|++++.+.+- +. +..+.+||.-.. .........
T Consensus 138 g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-------ykv~aYe~~ 210 (447)
T KOG4497|consen 138 GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-------YKVYAYERG 210 (447)
T ss_pred eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-------heeeeeeec
Confidence 7888888743332 21 223445543210 000112223
Q ss_pred ccEEEEEEccCCCEEEEeCCCCcEEEEecCCc---------------c---------c----------------------
Q 012007 325 NAVTALAVNQESAVVYCGSSDGLVNFWECEKH---------------L---------S---------------------- 358 (473)
Q Consensus 325 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---------------~---------~---------------------- 358 (473)
-.+..++|+|.+++|++|+.|+.+++.+--+- . .
T Consensus 211 lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~ 290 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWE 290 (447)
T ss_pred cceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccc
Confidence 57889999999999999999999988652100 0 0
Q ss_pred -----------cc--ceee--------cCcceEEEEEecCCEEEEEeCC--CcEEEEecCCCCceeEEEEecCCCCceeE
Q 012007 359 -----------HG--GVLR--------GHKMAVLCLAAAGNLVFSGSAD--RNICLWRREESGAHSCLAVLTGHTGPVKC 415 (473)
Q Consensus 359 -----------~~--~~~~--------~~~~~v~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~V~~ 415 (473)
+. ..++ .......++++|..++++-... +.+-+||++.. +.... -....+|..
T Consensus 291 ~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l---~l~av-LiQk~pira 366 (447)
T KOG4497|consen 291 ESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL---KLHAV-LIQKHPIRA 366 (447)
T ss_pred cchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh---hhhhh-hhhccceeE
Confidence 00 0000 0012234566677777776533 56899999882 32222 234678999
Q ss_pred EEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 416 LAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
..|+|... .|+.+.....+++|....
T Consensus 367 f~WdP~~p-------------rL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 367 FEWDPGRP-------------RLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred EEeCCCCc-------------eEEEEcCCceEEEEcCCC
Confidence 99999987 455444455799998765
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=2.1e-11 Score=105.41 Aligned_cols=320 Identities=13% Similarity=0.163 Sum_probs=180.8
Q ss_pred CCCCCcccccccccceeeeee------ec-----ccEEEE--EecCC-EEEEeeCCCcEEEeeCCcc--ccccccCcccE
Q 012007 101 PYSPNENLLSSCNGLIGSIVR------KE-----GHIYSL--AASGD-LLYTGSDSKNIRVWKNLKE--FSGFKSNSGLV 164 (473)
Q Consensus 101 ~~~p~~~~~~~~~~~~~~l~~------h~-----~~V~~~--~~~g~-~l~tg~~dg~i~vwd~~~~--~~~~~~h~~~V 164 (473)
.|+|.++.++++....-.++. |. +.|.-+ +.+.. .|.....|+.|.+|++.+. ...+......+
T Consensus 15 ~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agl 94 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGL 94 (447)
T ss_pred eECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcc
Confidence 356777776665543222221 11 223223 33444 4556677999999997643 34556667889
Q ss_pred EEEEEeCCCCE-EEEEeCCCeEEEEeCCCCCeeeEEeecccc------ccceeE--eecCCCcceEEEeecceeeEee--
Q 012007 165 KAIIISGDSNK-IFTGHQDGKIRIWKVSRKNASVHKRVGSLP------TFKDYV--KSSVNPKNYVEVRRNRSVLKIR-- 233 (473)
Q Consensus 165 ~~l~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-- 233 (473)
.+++|+|||+. |.+...|-.|.||.+.+.+........... ....+. .+..+...++.+.....-...+
T Consensus 95 s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f 174 (447)
T KOG4497|consen 95 SSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEF 174 (447)
T ss_pred eeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhc
Confidence 99999999954 556677899999999887654332211110 000000 0011111111111000000111
Q ss_pred --ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCccc--
Q 012007 234 --HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ-- 308 (473)
Q Consensus 234 --~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~-- 308 (473)
.+-..+.+.|+|||+.|+ +||---.-.+..+. -.-.+..+.|+|.+ +++.|+.|+.+++.+--+-
T Consensus 175 ~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~ 244 (447)
T KOG4497|consen 175 KLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP 244 (447)
T ss_pred CCCcccccCceECCCCcEEE---------Eecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence 223456677888776655 44421111111111 22467888999966 8899999999987531100
Q ss_pred -C------------------C--------------------------C-cc------------eeeeeeeccCCccEEEE
Q 012007 309 -G------------------K--------------------------G-TK------------HCLAQVLLKHENAVTAL 330 (473)
Q Consensus 309 -~------------------~--------------------------~-~~------------~~~~~~~~~~~~~v~~l 330 (473)
+ + . .. ..+..........+--+
T Consensus 245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l 324 (447)
T KOG4497|consen 245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL 324 (447)
T ss_pred hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence 0 0 0 00 00000111123346678
Q ss_pred EEccCCCEEEEeCC--CCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 331 AVNQESAVVYCGSS--DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 331 ~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
+|++|..++++-.. -+.+-+||++..+........|......+.|....|+.+.....+++|.... ..++..- +
T Consensus 325 afs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg---~~~V~vP-~ 400 (447)
T KOG4497|consen 325 AFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG---PRVVGVP-K 400 (447)
T ss_pred eecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC---ceEEecC-C
Confidence 99999999887643 3568999998765554444445444444455566777777677899998776 3444432 2
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcE
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSV 447 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v 447 (473)
..-.|..+.|.-++. .++-.+.|...
T Consensus 401 ~GF~i~~l~W~~~g~-------------~i~l~~kDafc 426 (447)
T KOG4497|consen 401 KGFNIQKLQWLQPGE-------------FIVLCGKDAFC 426 (447)
T ss_pred CCceeeeEEecCCCc-------------EEEEEcCCceE
Confidence 335799999999998 78888888643
No 232
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=4.7e-12 Score=117.10 Aligned_cols=262 Identities=16% Similarity=0.245 Sum_probs=175.5
Q ss_pred EEEEecCCE-EEEeeCCCcEEEeeCCccccccccCc--ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecc
Q 012007 127 YSLAASGDL-LYTGSDSKNIRVWKNLKEFSGFKSNS--GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 127 ~~~~~~g~~-l~tg~~dg~i~vwd~~~~~~~~~~h~--~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 203 (473)
..+++||+| +|||..--.|++||+...-..|.-|. ..|.-.-++.|-..++--..|.+|-+-.....- ...++..
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h--y~~RIP~ 134 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH--YRTRIPK 134 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee--eeeecCc
Confidence 456788986 77888899999999887666665553 345545555555556666667666554322111 1111111
Q ss_pred --------ccccceeEeecCCCcceEEEeecceeeEee-ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 204 --------LPTFKDYVKSSVNPKNYVEVRRNRSVLKIR-HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 204 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
.+...-++.........+.+...+.+.-+. ....++++..++...+|++|+.+|.|..||.++...+..+.
T Consensus 135 ~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 135 FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence 011112222233333333333333332222 34789999999999999999999999999998876665553
Q ss_pred c------CCC-----ceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC--CCEEE
Q 012007 275 A------HDD-----AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE--SAVVY 340 (473)
Q Consensus 275 ~------~~~-----~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~ 340 (473)
. |.+ .|+++.|..++ .+++|+.+|.+.|||++. ...+...-.....+|..+.|.+. +..|+
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa-----~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~ 289 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA-----SKPLLVKDHGYELPIKKLDWQDTDQQNKVV 289 (703)
T ss_pred cccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc-----CCceeecccCCccceeeecccccCCCceEE
Confidence 2 333 49999999988 799999999999999984 33344444555678899999775 34554
Q ss_pred EeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 341 CGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+. ....++|||-.++.........+...-.|+-+++.+++++-.++.+..|=+..
T Consensus 290 S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 290 SM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 44 45689999998887766666666666788889999999999998888776654
No 233
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.48 E-value=3.5e-13 Score=139.02 Aligned_cols=193 Identities=23% Similarity=0.304 Sum_probs=154.2
Q ss_pred cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
.+.+-..|.++.-+|...+-+||+.||.|++|....++.+...+.. ...
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-------------------------------g~s 2252 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-------------------------------GNS 2252 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-------------------------------Ccc
Confidence 3445567888888898899999999999999999988876666543 337
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEE---eCCCcEEEEeCcccCCCcc
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTG---SADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~---~~dg~i~vwd~~~~~~~~~ 313 (473)
.|+.+.|+.+|+.+..+..||.+.+|.+. .++....+.|........|-. ..+++. +.++.+.+||..... .
T Consensus 2253 ~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~---~ 2327 (2439)
T KOG1064|consen 2253 RVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPP---M 2327 (2439)
T ss_pred hhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCc---c
Confidence 88999999999999999999999999986 677777888998888888765 444544 347899999986432 1
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEe
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd 393 (473)
... .-..|.+.++++++-|...+|++|+.+|.|++||++..... ..+. . +. ...++++|+..|.|+||+
T Consensus 2328 ~s~--v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~-h~~~-----~--~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2328 NSL--VHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR-HTFQ-----A--LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred cce--eeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH-HHhh-----h--hh-hhheeeccCcccceEEEE
Confidence 122 22789999999999999999999999999999999864332 1221 1 33 577999999999999999
Q ss_pred cCC
Q 012007 394 REE 396 (473)
Q Consensus 394 ~~~ 396 (473)
+..
T Consensus 2397 ~s~ 2399 (2439)
T KOG1064|consen 2397 LSE 2399 (2439)
T ss_pred ccc
Confidence 987
No 234
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5.5e-11 Score=115.11 Aligned_cols=196 Identities=10% Similarity=0.030 Sum_probs=123.4
Q ss_pred ccCCeeEEEEcCCCCEEEEEeC---CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEE-EEeCCC--cEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSW---DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF-TGSADG--TVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~---dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~-s~~~dg--~i~vwd~~ 306 (473)
+...+...+|+|||+.|+..+. +..|.+||+.+++.... ......+....|+|++ .|+ +.+.+| .|.+||+.
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 5567889999999998887642 35699999988754332 2223345568999998 444 445455 48888886
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CCcEEEE--ecCCcccccceeecCcceEEEEEecCCEEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DGLVNFW--ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.+. ...+..+...+....|+|+|+.|+..+. ++...|| |+.++........++.....+++++|++|+..
T Consensus 276 tg~-------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 276 SGQ-------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred CCC-------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 322 1223334456788999999998876654 3444555 66544322111222233346788999998876
Q ss_pred eCC---CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc---EEEEEcCCC
Q 012007 384 SAD---RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS---VKVWRVSEH 455 (473)
Q Consensus 384 ~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~---v~iW~i~~~ 455 (473)
+.+ ..|.+||+.++. .. .+... .......|+||+. +|+.++.|+. +.+|++...
T Consensus 349 ~~~~g~~~I~~~dl~~g~-~~---~Lt~~-~~~~~p~~SpDG~-------------~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGG-VQ---VLTDT-FLDETPSIAPNGT-------------MVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EccCCCceEEEEECCCCC-eE---EeCCC-CCCCCceECCCCC-------------EEEEEEcCCCceEEEEEECCCC
Confidence 543 358889988743 22 22221 2234678999998 6777777764 667777543
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.6e-11 Score=117.49 Aligned_cols=179 Identities=11% Similarity=0.082 Sum_probs=116.6
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC---CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EE-EEEeCCCcEEEEeCccc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTGSADGTVKVWRRELQ 308 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~~~dg~i~vwd~~~~ 308 (473)
+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|++ .| ++.+.+|...+|.++..
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 66778899999999999887643 359999998886543 33334556788999998 44 46778888888776532
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEec--CCcccccceeecCcceEEEEEecCCEEEEEeC
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWEC--EKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
.. ....+..+........|+|||+.|+..+ .+|...||.+ ..+........+.......++++|++|+..+.
T Consensus 273 ~~-----~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 273 GS-----GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred CC-----CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 21 1223333444566788999999877654 3466666654 33322111222222233578899999987775
Q ss_pred CC---cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 386 DR---NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 386 dg---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
++ .|.+||+.++.. ..+... .......|+|+++
T Consensus 348 ~~g~~~I~v~d~~~g~~----~~lt~~-~~~~~p~~spdg~ 383 (427)
T PRK02889 348 VGGAFKLYVQDLATGQV----TALTDT-TRDESPSFAPNGR 383 (427)
T ss_pred cCCcEEEEEEECCCCCe----EEccCC-CCccCceECCCCC
Confidence 54 599999987432 222222 2346789999998
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.45 E-value=7.2e-11 Score=110.90 Aligned_cols=299 Identities=11% Similarity=0.072 Sum_probs=167.2
Q ss_pred cceeeeeeecc-cE-EEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEE
Q 012007 114 GLIGSIVRKEG-HI-YSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIW 188 (473)
Q Consensus 114 ~~~~~l~~h~~-~V-~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vw 188 (473)
..+..+..... +. ..+++||+++++++.||.|.++|+. +.+..++.. .....+++++||++++++. .++.+.++
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEe
Confidence 34555554332 22 3467889999999999999999976 444555543 3468899999999998775 58999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC-CCEEEEEcCCC
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD-KTLKVWRISDC 267 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-g~v~vwd~~~~ 267 (473)
|.++.+..........+.. .....+..|..++....++..-.| +.|.+.|....
T Consensus 106 D~~tle~v~~I~~~~~~~~-------------------------~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVD-------------------------GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp ETTT--EEEEEE--EE-TT-------------------------TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred ccccccceeeccccccccc-------------------------ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 9999877665543321110 023467788888888866666554 77888888765
Q ss_pred eee--EEeecCCCceeEEEEcCCC-E-EEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC--------
Q 012007 268 KCL--ESINAHDDAINSVVAGFDS-L-VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-------- 335 (473)
Q Consensus 268 ~~~--~~~~~~~~~v~~l~~~~~~-~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-------- 335 (473)
+.+ ..+. .........|.+++ + +++...+..|-++|...... ......-...|..++..+ .+|.
T Consensus 161 ~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~--v~~i~~g~~p~~~~~~~~-php~~g~vw~~~ 236 (369)
T PF02239_consen 161 KNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL--VALIDTGKKPHPGPGANF-PHPGFGPVWATS 236 (369)
T ss_dssp SCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE--EEEEE-SSSBEETTEEEE-EETTTEEEEEEE
T ss_pred cccceeeec-ccccccccccCcccceeeecccccceeEEEeeccceE--EEEeeccccccccccccc-cCCCcceEEeec
Confidence 433 2333 34566778899988 4 44556678999999864221 000001112233333332 2222
Q ss_pred --CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEE----eCCCcEEEEecCCCCceeEEEEecCC
Q 012007 336 --SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSG----SADRNICLWRREESGAHSCLAVLTGH 409 (473)
Q Consensus 336 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~h 409 (473)
+...++.-....+.+||....+....+......--...+|+++++++. ...+.|.++|.++ .+.+..+...
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~t---l~~~~~i~~~ 313 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT---LKVVKTITPG 313 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCG---TEEEE-HHHH
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcC---cceeEEEecc
Confidence 222212222234556777664444333332233334567899999998 4458999999998 4555555422
Q ss_pred -CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCC-cEEEEEcCCCCC
Q 012007 410 -TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDK-SVKVWRVSEHAP 457 (473)
Q Consensus 410 -~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg-~v~iW~i~~~~~ 457 (473)
...+..+.|++++.. +.+|.-.++ .|.|||..+.+.
T Consensus 314 ~~~~~~h~ef~~dG~~------------v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 314 PGKRVVHMEFNPDGKE------------VWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp HT--EEEEEE-TTSSE------------EEEEEE--TTEEEEEETTTTEE
T ss_pred CCCcEeccEECCCCCE------------EEEEEecCCCEEEEEECCCcEE
Confidence 235899999999984 444444444 899999887653
No 237
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.45 E-value=9.5e-11 Score=100.01 Aligned_cols=271 Identities=13% Similarity=0.141 Sum_probs=175.4
Q ss_pred CCcEEEeeCCcc----cccc-ccCcccEEEEEEeC---CCC-EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 142 SKNIRVWKNLKE----FSGF-KSNSGLVKAIIISG---DSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 142 dg~i~vwd~~~~----~~~~-~~h~~~V~~l~~s~---~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
.|.+.+|++... +..+ ......+..+.|.- +|. .|+-+..+|.|.++.............-.....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki----- 119 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI----- 119 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh-----
Confidence 467778875421 1111 22345567777753 444 566677788898888765443332221100000
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee--eEEeecCCCceeEEEEcCCC-
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC--LESINAHDDAINSVVAGFDS- 289 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~v~~l~~~~~~- 289 (473)
......++.|++.+..++++..+|.+.+-+...... ++.++.|+-..+...|+...
T Consensus 120 ---------------------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p 178 (339)
T KOG0280|consen 120 ---------------------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP 178 (339)
T ss_pred ---------------------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC
Confidence 111346788999999999999999999776655544 44889999999999887554
Q ss_pred -EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCc
Q 012007 290 -LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK 367 (473)
Q Consensus 290 -~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 367 (473)
++++|+.|+.+..||++.. ..........|...|.+|.-+| ...++++|+.|-.|++||.++..++... ..-.
T Consensus 179 nlvytGgDD~~l~~~D~R~p----~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-~~v~ 253 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIP----KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-AKVG 253 (339)
T ss_pred ceEEecCCCceEEEEEecCC----cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc-Cccc
Confidence 8999999999999999832 2333444667889999998887 5789999999999999999864443221 1122
Q ss_pred ceEEEEEec----CCEEEEEeCCCcEEEEecCCCCc--eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 368 MAVLCLAAA----GNLVFSGSADRNICLWRREESGA--HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 368 ~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
+.|..+... +.+|+++-..| .+|-+...... ...+.....|.+-+..-.|..... +|+|+
T Consensus 254 GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~-------------~lATC 319 (339)
T KOG0280|consen 254 GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDS-------------FLATC 319 (339)
T ss_pred cceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccc-------------eeeee
Confidence 455555443 33455554444 67777665211 124555667777777777744433 78887
Q ss_pred e-CCCcEE-EEEcCCCCC
Q 012007 442 S-LDKSVK-VWRVSEHAP 457 (473)
Q Consensus 442 s-~Dg~v~-iW~i~~~~~ 457 (473)
+ .|+.++ +|-.-++++
T Consensus 320 sFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 320 SFYDKKIRQLWLHITGEP 337 (339)
T ss_pred eccccceeeeeeeccCCc
Confidence 6 477755 887665543
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=6.2e-11 Score=115.39 Aligned_cols=176 Identities=11% Similarity=0.053 Sum_probs=116.8
Q ss_pred ccCCeeEEEEcCCCCEEEEEeC---CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-E-EEEEeCCCc--EEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSW---DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-L-VFTGSADGT--VKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~---dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~-l~s~~~dg~--i~vwd~~ 306 (473)
|...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+....|+|++ . +++.+.++. |.+||+.
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 6778999999999998888763 467999999887653 344456677788999998 4 456666666 6666765
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CC--cEEEEecCCcccccceee-cCcceEEEEEecCCEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DG--LVNFWECEKHLSHGGVLR-GHKMAVLCLAAAGNLVFS 382 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~s 382 (473)
.+. ...+..+........|+|||+.|+..+. +| .|++||+..+... .... ........++++|++|+.
T Consensus 279 ~~~-------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~ 350 (435)
T PRK05137 279 SGT-------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAF 350 (435)
T ss_pred CCc-------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEE
Confidence 321 1233445555677899999998876653 33 5778887654322 2211 112223568899999887
Q ss_pred EeCC---CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 383 GSAD---RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 383 ~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
...+ ..|.+||+.++. . ..+. ....+....|+||++
T Consensus 351 ~~~~~~~~~i~~~d~~~~~-~---~~lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 351 TKQGGGQFSIGVMKPDGSG-E---RILT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred EEcCCCceEEEEEECCCCc-e---Eecc-CCCCCCCCeECCCCC
Confidence 6643 358888876532 1 2222 123467889999998
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.43 E-value=4.3e-11 Score=116.50 Aligned_cols=229 Identities=10% Similarity=-0.003 Sum_probs=142.5
Q ss_pred cEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcc
Q 012007 144 NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQD---GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKN 219 (473)
Q Consensus 144 ~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (473)
.|.++|.. .....+..+...+...+|+|||++|+.+..+ ..|++||+.++.......
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~------------------- 231 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS------------------- 231 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-------------------
Confidence 57777764 3345555667789999999999999987654 479999998775322111
Q ss_pred eEEEeecceeeEeeccCCeeEEEEcCCCCEEEE-EeCCC--CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEe
Q 012007 220 YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS-GSWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS 295 (473)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~s~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~ 295 (473)
+...+.+++|+|+++.|+. .+.++ .|++||+.+++.. .+..+........|++++ .|+..+
T Consensus 232 --------------~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s 296 (417)
T TIGR02800 232 --------------FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTS 296 (417)
T ss_pred --------------CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEE
Confidence 3445667899999987764 44444 5889999876543 333444445567889987 555444
Q ss_pred -CCC--cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC---cEEEEecCCcccccceeecCcce
Q 012007 296 -ADG--TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG---LVNFWECEKHLSHGGVLRGHKMA 369 (473)
Q Consensus 296 -~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~ 369 (473)
.++ .|.++|+.... ...+..+...+....|+|++++|+.+..++ .|.+||+.++... .........
T Consensus 297 ~~~g~~~iy~~d~~~~~-------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~ 368 (417)
T TIGR02800 297 DRGGSPQIYMMDADGGE-------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDE 368 (417)
T ss_pred CCCCCceEEEEECCCCC-------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCC
Confidence 344 46666664221 122233445667889999999998887765 7888998764321 111111122
Q ss_pred EEEEEecCCEEEEEeCCC---cEEEEecCCCCceeEEEEecCCCCceeEEEE
Q 012007 370 VLCLAAAGNLVFSGSADR---NICLWRREESGAHSCLAVLTGHTGPVKCLAV 418 (473)
Q Consensus 370 v~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~ 418 (473)
-..++++|++|+..+.++ .+.+.+... .....+..+.+.+..++|
T Consensus 369 ~p~~spdg~~l~~~~~~~~~~~l~~~~~~g----~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 369 SPSFAPNGRMILYATTRGGRGVLGLVSTDG----RFRARLPLGNGDVREPAW 416 (417)
T ss_pred CceECCCCCEEEEEEeCCCcEEEEEEECCC----ceeeECCCCCCCcCCCCC
Confidence 346888999888777654 344555433 223334333444554444
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=6.8e-10 Score=104.48 Aligned_cols=277 Identities=12% Similarity=0.204 Sum_probs=170.4
Q ss_pred EEEeeCC----CcEEEeeCC---cccccc--ccCcccEEEEEEeCCCCEEEEEeC----CCeEEEEeCCCC--CeeeEEe
Q 012007 136 LYTGSDS----KNIRVWKNL---KEFSGF--KSNSGLVKAIIISGDSNKIFTGHQ----DGKIRIWKVSRK--NASVHKR 200 (473)
Q Consensus 136 l~tg~~d----g~i~vwd~~---~~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~----dg~i~vwd~~~~--~~~~~~~ 200 (473)
++.|+.. +.|.+|+.. ..+... ..-......|++++++++|++... +|.|..|++... .......
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4555555 678888652 111111 113345677899999999999877 468999988764 2222111
Q ss_pred eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCC-CeeeEE---ee-
Q 012007 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISD-CKCLES---IN- 274 (473)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~-~~~~~~---~~- 274 (473)
.. ........++++|++++|+++. .+|.|.++++.. +..... +.
T Consensus 82 ~~------------------------------~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~ 131 (345)
T PF10282_consen 82 VP------------------------------SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH 131 (345)
T ss_dssp EE------------------------------ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES
T ss_pred ec------------------------------cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc
Confidence 11 0234456799999999999987 489999999976 443322 21
Q ss_pred ---------cCCCceeEEEEcCCC-EEEE-EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-
Q 012007 275 ---------AHDDAINSVVAGFDS-LVFT-GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG- 342 (473)
Q Consensus 275 ---------~~~~~v~~l~~~~~~-~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~- 342 (473)
.......++.++|++ ++++ .-....|.+|++......... ..............++|+|+++++++.
T Consensus 132 ~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 132 EGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIKVPPGSGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp EEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred CCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eeccccccCCCCcEEEEcCCcCEEEEec
Confidence 112456788999997 4444 344568999998643311111 112233455678999999999887665
Q ss_pred CCCCcEEEEecC--Cccc-cccee-------ecC-cceEEEEEecCCEEEEEe-CCCcEEEEecCC-CCceeEEEEecCC
Q 012007 343 SSDGLVNFWECE--KHLS-HGGVL-------RGH-KMAVLCLAAAGNLVFSGS-ADRNICLWRREE-SGAHSCLAVLTGH 409 (473)
Q Consensus 343 ~~dg~i~iwd~~--~~~~-~~~~~-------~~~-~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~~~~~~h 409 (473)
-.++.|.+|++. ++.. ..... .+. ...-..++++|++|+++. .++.|.+|+++. .+....+..+...
T Consensus 211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~ 290 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG 290 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES
T ss_pred CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC
Confidence 457789999887 2211 10111 111 234467889999888776 467899999943 2334555555443
Q ss_pred CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 410 ~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
......++++|+++. ++++.-.++.|.+|++...
T Consensus 291 G~~Pr~~~~s~~g~~------------l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 291 GKFPRHFAFSPDGRY------------LYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp SSSEEEEEE-TTSSE------------EEEEETTTTEEEEEEEETT
T ss_pred CCCccEEEEeCCCCE------------EEEEecCCCeEEEEEEeCC
Confidence 445799999999982 4445557789999998643
No 241
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.42 E-value=2.7e-11 Score=105.44 Aligned_cols=260 Identities=15% Similarity=0.270 Sum_probs=168.8
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCee---eEEeecc-ccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNAS---VHKRVGS-LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
..-|.+|.|...|.+|+||..+|.|.++.-+..... ....... .+.+ + .+..+.-..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEF-D------------------YLkSleieE 85 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEF-D------------------YLKSLEIEE 85 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCccc-c------------------hhhhhhhhh
Confidence 456899999999999999999999999976543321 0000000 0000 0 011112456
Q ss_pred CeeEEEEcCCC--CEEEEEeCCCCEEEEEcCCCee-----------------------------------eEEe-ecCCC
Q 012007 237 AVSCLSLNAEQ--GLLYSGSWDKTLKVWRISDCKC-----------------------------------LESI-NAHDD 278 (473)
Q Consensus 237 ~v~~l~~~~~~--~~l~s~s~dg~v~vwd~~~~~~-----------------------------------~~~~-~~~~~ 278 (473)
.|..+.|.+++ ..++..+.|.+|++|.+..... .+.+ .+|.-
T Consensus 86 KinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHty 165 (433)
T KOG1354|consen 86 KINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTY 165 (433)
T ss_pred hhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccccee
Confidence 78889998855 4667777899999998753210 0111 35777
Q ss_pred ceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeecc-----CCccEEEEEEccC-CCEEEEeCCCCcEEEEe
Q 012007 279 AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK-----HENAVTALAVNQE-SAVVYCGSSDGLVNFWE 352 (473)
Q Consensus 279 ~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd 352 (473)
-|++|.++.|...+....|=.|.+|+++.... ...++ ...+ -..-|++..|+|. .++++-.++.|.|++-|
T Consensus 166 hiNSIS~NsD~Et~lSADdLRINLWnlei~d~--sFnIV-DIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 166 HINSISVNSDKETFLSADDLRINLWNLEIIDQ--SFNIV-DIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred EeeeeeecCccceEeeccceeeeeccccccCC--ceeEE-EccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 88999999898777778899999999875432 11111 1222 2345889999995 47777888899999999
Q ss_pred cCCccccc---ceee------------cCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCC----
Q 012007 353 CEKHLSHG---GVLR------------GHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTG---- 411 (473)
Q Consensus 353 ~~~~~~~~---~~~~------------~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---- 411 (473)
++...... ..+. +--..| ..++.+|+|+++-.. -+|++||++.. .+++.++.-|..
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme--~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME--AKPVETYPVHEYLRSK 319 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc--CCcceEEeehHhHHHH
Confidence 98421111 0110 001122 445667999998764 48999999643 344444444421
Q ss_pred --------ce---eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 412 --------PV---KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 412 --------~V---~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.| ..++|+.++. +++||+....++++++..+...
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~-------------~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDS-------------YVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcc-------------eEecccccceEEEecCCCCcce
Confidence 22 4578888887 8999999999999997766543
No 242
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=7.3e-11 Score=114.73 Aligned_cols=195 Identities=11% Similarity=0.042 Sum_probs=124.4
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC---CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EE-EEEeCCC--cEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTGSADG--TVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~~~dg--~i~vwd~~ 306 (473)
+...+.+.+|+|+|+.|+..+.+ ..|++||+.+++... +....+...+..|+|++ .+ ++.+.+| .|.+||+.
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 66678899999999999887743 369999998876533 33334455678999998 44 4555665 58888886
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCc--EEEEecCCcccccceeecCcceEEEEEecCCEEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGL--VNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.+. ...+..+.......+|+|||+.|+..+ .+|. |.++|+.++........+......+++++|++|+..
T Consensus 281 ~g~-------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 281 SRQ-------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred CCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 432 122334444556789999999887665 3454 666676554322112223333346788999998876
Q ss_pred eCCC---cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC-CC--cEEEEEcCC
Q 012007 384 SADR---NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL-DK--SVKVWRVSE 454 (473)
Q Consensus 384 ~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~-Dg--~v~iW~i~~ 454 (473)
+.++ .|.+||+.++. .. .+. +........|+|+++ .|+..+. .+ .|.++++..
T Consensus 354 ~~~~~~~~I~v~d~~~g~---~~-~Lt-~~~~~~~p~~spdG~-------------~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGS---VR-TLT-PGSLDESPSFAPNGS-------------MVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ECCCCceeEEEEECCCCC---eE-ECC-CCCCCCCceECCCCC-------------EEEEEEecCCceEEEEEECCC
Confidence 5443 59999987732 22 222 222455679999998 4444443 33 466676644
No 243
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=4.4e-11 Score=113.50 Aligned_cols=264 Identities=13% Similarity=0.114 Sum_probs=181.1
Q ss_pred ccEEEEEec--CCEEEEeeCCCcEEEeeCCc--------c---------ccccccCcccEEEEEEeCCCCEEEEEeCCCe
Q 012007 124 GHIYSLAAS--GDLLYTGSDSKNIRVWKNLK--------E---------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGK 184 (473)
Q Consensus 124 ~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~--------~---------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 184 (473)
....|++|+ ..++|+||.||.++|-.+.. . -+++.+|++.|.-+.|+.+.+.|-|...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 344577776 67999999999999985321 1 2357899999999999999999999999999
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
|.||-+-.+........ ....+.|.+++|+.+|..++....||.|.+=.+
T Consensus 95 IiVWmlykgsW~EEMiN------------------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMIN------------------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred EEEEeeecccHHHHHhh------------------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 99999876643211110 125677899999999999999999999988777
Q ss_pred CCCeee-EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccC--CCcceeeee---eeccCCccEEEEEEc----
Q 012007 265 SDCKCL-ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG--KGTKHCLAQ---VLLKHENAVTALAVN---- 333 (473)
Q Consensus 265 ~~~~~~-~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~---~~~~~~~~v~~l~~~---- 333 (473)
...+.- ..++ ......+.|++|. .++.+-.+|.+++||....- +....+.+. .+......|..+.|.
T Consensus 145 dGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 145 DGNRIWGKELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred ccceecchhcc--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 543321 1222 2234467899887 66677788999999864210 001111111 111222335556663
Q ss_pred ----cCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCC---------CcEEEEecCCCCce
Q 012007 334 ----QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD---------RNICLWRREESGAH 400 (473)
Q Consensus 334 ----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~ 400 (473)
|+...|+++..+|.+.|..-.+...+...-.+....-..+.++|..|++++.| +.|++|..-.
T Consensus 223 ~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G---- 298 (1189)
T KOG2041|consen 223 QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG---- 298 (1189)
T ss_pred ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccch----
Confidence 47789999999999999876665555444444333335567779999998865 2566665443
Q ss_pred eEEEEecCCCCceeEEEEecCCC
Q 012007 401 SCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 401 ~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
..+..++-....|++++|...+-
T Consensus 299 ~i~gtlkvpg~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 299 HIVGTLKVPGSCITGLSWEGTGL 321 (1189)
T ss_pred hheEEEecCCceeeeeEEcCCce
Confidence 55666666677899999987664
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.3e-10 Score=113.30 Aligned_cols=232 Identities=9% Similarity=0.004 Sum_probs=141.3
Q ss_pred cEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcc
Q 012007 144 NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQD---GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKN 219 (473)
Q Consensus 144 ~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (473)
.|.++|.. .....+..+...+....|+|||++|+..+.+ ..|.+|++.+++......
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~------------------- 240 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN------------------- 240 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-------------------
Confidence 36666754 3344555677789999999999999876644 368999998775422111
Q ss_pred eEEEeecceeeEeeccCCeeEEEEcCCCCEEEE-EeCCC--CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEE-EE
Q 012007 220 YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS-GSWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF-TG 294 (473)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~s~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~-s~ 294 (473)
....+....|+|+|+.|+. ...++ .|++||+.+++.. .+..+........|+|++ .++ +.
T Consensus 241 --------------~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s 305 (430)
T PRK00178 241 --------------FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTS 305 (430)
T ss_pred --------------CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEE
Confidence 2233446889999998874 44455 5888899877643 344455556677899997 444 44
Q ss_pred eCCCc--EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-C--cEEEEecCCcccccceeecCcce
Q 012007 295 SADGT--VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-G--LVNFWECEKHLSHGGVLRGHKMA 369 (473)
Q Consensus 295 ~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~ 369 (473)
..+|. |.++|+..+. ...+ ... ........|+|+++.|+....+ + .|.+||+.++.... ........
T Consensus 306 ~~~g~~~iy~~d~~~g~---~~~l--t~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~ 377 (430)
T PRK00178 306 DRGGKPQIYKVNVNGGR---AERV--TFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDE 377 (430)
T ss_pred CCCCCceEEEEECCCCC---EEEe--ecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCC
Confidence 44444 5556654321 1111 111 1223457899999998876543 3 47888987653321 11111222
Q ss_pred EEEEEecCCEEEEEeCC-C--cEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 370 VLCLAAAGNLVFSGSAD-R--NICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 370 v~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
-..++++|++++..+.+ + .|.++++.. .....+..+.+.+...+|+|-
T Consensus 378 ~p~~spdg~~i~~~~~~~g~~~l~~~~~~g----~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 378 SPSVAPNGTMLIYATRQQGRGVLMLVSING----RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCCccCCC
Confidence 34788999988776644 3 466666654 222334445566777788773
No 245
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=3.9e-11 Score=102.34 Aligned_cols=147 Identities=12% Similarity=0.179 Sum_probs=101.8
Q ss_pred EEEEcCCCCEEEEEeC----------CCCEEEEEcC-CCeeeEEeec-CCCceeEEEEcCCC-EE--EEEeCCCcEEEEe
Q 012007 240 CLSLNAEQGLLYSGSW----------DKTLKVWRIS-DCKCLESINA-HDDAINSVVAGFDS-LV--FTGSADGTVKVWR 304 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~----------dg~v~vwd~~-~~~~~~~~~~-~~~~v~~l~~~~~~-~l--~s~~~dg~i~vwd 304 (473)
.+.|+++|++|+.-.. -+...+|.++ ....+..+.. ..++|.+++|+|++ .+ +.|..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 5779999987766543 1235555552 2234444443 34579999999998 43 3455678999999
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC---CCcEEEEecCCcccccceeecCcceEEEEEecCCEEE
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS---DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVF 381 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 381 (473)
++. .....+ +...+..+.|+|+|++|++++. .|.|.+||.++.... ...........+++|+|++|+
T Consensus 90 ~~~-------~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i-~~~~~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 90 VKG-------KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI-STFEHSDATDVEWSPDGRYLA 159 (194)
T ss_pred Ccc-------cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe-eccccCcEEEEEEcCCCCEEE
Confidence 851 111222 3567789999999999999864 467999999965444 333334455678889999999
Q ss_pred EEeC------CCcEEEEecCC
Q 012007 382 SGSA------DRNICLWRREE 396 (473)
Q Consensus 382 s~~~------dg~i~iwd~~~ 396 (473)
++.. |+.++||+...
T Consensus 160 ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEeccceeccccEEEEEecC
Confidence 9874 78899999875
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=5.5e-11 Score=117.59 Aligned_cols=143 Identities=23% Similarity=0.322 Sum_probs=119.3
Q ss_pred ecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 131 ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 131 ~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
++.-++++|+.-+.|.+|+.. +.-..+.+|.+.|..+.|+.||+++++++.|.++|+|++++.+...
T Consensus 143 ~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~----------- 211 (967)
T KOG0974|consen 143 AEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG----------- 211 (967)
T ss_pred CcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-----------
Confidence 344589999999999999854 2222588999999999999999999999999999999999887543
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCC-CceeEEEEcC
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD-DAINSVVAGF 287 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~~~ 287 (473)
...++|...|..++|.|+ ++++++.|-+.++|+. ++..+..+..|. ..+..++..+
T Consensus 212 --------------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~ 268 (967)
T KOG0974|consen 212 --------------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPI 268 (967)
T ss_pred --------------------cccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcC
Confidence 122369999999999997 9999999999999976 455555777664 5788888888
Q ss_pred CC-EEEEEeCCCcEEEEeCcc
Q 012007 288 DS-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 288 ~~-~l~s~~~dg~i~vwd~~~ 307 (473)
+. .+++++.|+.+++|++..
T Consensus 269 ~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 269 GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred CceEEEeeccCcchhhhhhhc
Confidence 77 888999999999999864
No 247
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=3.7e-11 Score=102.46 Aligned_cols=113 Identities=11% Similarity=0.232 Sum_probs=84.0
Q ss_pred CCccEEEEEEccCCCEEEE--eCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCC---CcEEEEecCCC
Q 012007 323 HENAVTALAVNQESAVVYC--GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD---RNICLWRREES 397 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d---g~i~iwd~~~~ 397 (473)
..++|.+++|+|+++.+++ |..++.|.+||++. ... ..+.........++|+|++|++|+.+ |.|.+||+++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-~~i-~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~- 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-KKI-FSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK- 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-cEe-EeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-
Confidence 4457999999999988654 45678999999973 222 23333444456788999999998754 6699999997
Q ss_pred CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee------CCCcEEEEEcCCC
Q 012007 398 GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS------LDKSVKVWRVSEH 455 (473)
Q Consensus 398 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s------~Dg~v~iW~i~~~ 455 (473)
.+.+.... | ..++.++|+|+++ +|+++. .|..++||++...
T Consensus 135 --~~~i~~~~-~-~~~t~~~WsPdGr-------------~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 135 --KKKISTFE-H-SDATDVEWSPDGR-------------YLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred --CEEeeccc-c-CcEEEEEEcCCCC-------------EEEEEEeccceeccccEEEEEecCe
Confidence 56666554 3 3478999999999 677665 3889999999644
No 248
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.38 E-value=6e-11 Score=103.33 Aligned_cols=248 Identities=19% Similarity=0.280 Sum_probs=178.8
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK-NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
+..++||...|++...-|-..-+++.+.|.++|||--.+. +.-.... .
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-------------------------------~ 65 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-------------------------------H 65 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-------------------------------h
Confidence 4567889999999888888888999999999999954322 2111110 0
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC----CCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcc
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS----DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~----~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~ 307 (473)
....+++++.+.++...|++|-..|++.-+.+. ....++....|...+..+.++... ++++.+.|..+.---.+.
T Consensus 66 ~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 66 YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 145678999999999999999999999988764 344556667899999999987654 888888888775433332
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC-CcccccceeecCcceEEEEEec--CCEEEEEe
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE-KHLSHGGVLRGHKMAVLCLAAA--GNLVFSGS 384 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~ 384 (473)
+......... ...+++.+.-. +.+.|...|.|.+-.+. +...+...+.+|...+.+++++ ...|++|.
T Consensus 146 ~~~lg~Y~~~-------~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~ 216 (404)
T KOG1409|consen 146 GNRLGGYNFE-------TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA 216 (404)
T ss_pred CCcccceEee-------ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc
Confidence 2211111110 11111222111 56667777777776654 2344556788999999999988 66899999
Q ss_pred CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.|..|.+||+-.. ......+.+|...|..+...+.-. .+++++.||.|.+|+++...
T Consensus 217 ~d~~vi~wdigg~--~g~~~el~gh~~kV~~l~~~~~t~-------------~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 217 SDHSVIMWDIGGR--KGTAYELQGHNDKVQALSYAQHTR-------------QLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ccCceEEEeccCC--cceeeeeccchhhhhhhhhhhhhe-------------eeeeccCCCeEEEEecccee
Confidence 9999999999763 334566789999999999888877 79999999999999998643
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.9e-10 Score=111.78 Aligned_cols=232 Identities=11% Similarity=0.004 Sum_probs=137.7
Q ss_pred cEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCC-C--eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcc
Q 012007 144 NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQD-G--KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKN 219 (473)
Q Consensus 144 ~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (473)
.|.++|.. .....+..+...+....|+|||++|+..+.+ + .|.+||+.+++......
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~------------------- 259 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS------------------- 259 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-------------------
Confidence 45555643 2234455567788999999999998876543 2 58888988765322111
Q ss_pred eEEEeecceeeEeeccCCeeEEEEcCCCCEEEE-EeCCCC--EEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EE-EEE
Q 012007 220 YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS-GSWDKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTG 294 (473)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~s~dg~--v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~ 294 (473)
.........|+|||+.|+. .+.++. |+++|+.+++. ..+..+........|+|++ .+ ++.
T Consensus 260 --------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s 324 (448)
T PRK04792 260 --------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTS 324 (448)
T ss_pred --------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEE
Confidence 1122346789999997765 556665 77888877654 3344455566778899998 44 444
Q ss_pred eCCCcEEEE--eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CC--cEEEEecCCcccccceeecCcce
Q 012007 295 SADGTVKVW--RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DG--LVNFWECEKHLSHGGVLRGHKMA 369 (473)
Q Consensus 295 ~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 369 (473)
..++...+| |+..+. .. .... ........+|+|+|++|+..+. ++ .|.++|+.++... .........
T Consensus 325 ~~~g~~~Iy~~dl~~g~---~~--~Lt~--~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~ 396 (448)
T PRK04792 325 ERGGKPQIYRVNLASGK---VS--RLTF--EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDE 396 (448)
T ss_pred CCCCCceEEEEECCCCC---EE--EEec--CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCC
Confidence 445554454 554221 11 1111 1222345789999998877654 34 3555677654321 111111122
Q ss_pred EEEEEecCCEEEEEeCC-Cc--EEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 370 VLCLAAAGNLVFSGSAD-RN--ICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 370 v~~~~~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
-..++++|++|+....+ +. +.+++... .....+..+.+.+...+|+|-
T Consensus 397 ~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 397 SPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCCccCCC
Confidence 24688999887765543 33 66667643 334445555666778888873
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.36 E-value=5.8e-09 Score=95.89 Aligned_cols=269 Identities=9% Similarity=0.043 Sum_probs=164.5
Q ss_pred CcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeC----------CCeEEEEeCCCCCeeeEEeecccccccee
Q 012007 143 KNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ----------DGKIRIWKVSRKNASVHKRVGSLPTFKDY 210 (473)
Q Consensus 143 g~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (473)
+.|.|.|.. +.+..+..-..+ ..+ ++||++.|+.+.. +..|.+||..+.+......+...|...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~-- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL-- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--
Confidence 788888854 223333322222 124 9999999888776 679999999999877666654322110
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-C-CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-W-DKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~-dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~ 288 (473)
....-..++++|||++|++.. . +..|.+.|+.+++.+.++.... ...-... .+
T Consensus 103 -----------------------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t-~e 157 (352)
T TIGR02658 103 -----------------------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPT-AN 157 (352)
T ss_pred -----------------------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEe-cC
Confidence 122334688999999999887 3 6889999999999999887533 2222222 22
Q ss_pred CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEE-EEEcc-CCCEEEEeCCCCcEEEEecCCcc----cccce
Q 012007 289 SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA-LAVNQ-ESAVVYCGSSDGLVNFWECEKHL----SHGGV 362 (473)
Q Consensus 289 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~-~~~~l~~~~~dg~i~iwd~~~~~----~~~~~ 362 (473)
....+-+.||......+...++.. ......+......+.. -.|.+ +++++++... |.|.+.|+.... .....
T Consensus 158 ~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 158 DTFFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred CccEEEeecCceEEEEecCCCceE-EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeee
Confidence 333344567776666555433211 1111111110111000 04455 8888887776 999999964321 11111
Q ss_pred e---------ecCcceEEEEEecCCEEEEEe----------CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 363 L---------RGHKMAVLCLAAAGNLVFSGS----------ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 363 ~---------~~~~~~v~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+ ........+++++++.+++.. ..+.|.++|..+ .+.+..+.- ...+..|+++||++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t---~kvi~~i~v-G~~~~~iavS~Dgk 311 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT---GKRLRKIEL-GHEIDSINVSQDAK 311 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC---CeEEEEEeC-CCceeeEEECCCCC
Confidence 1 111122377888888887743 124799999988 556665543 34789999999987
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
. .++++...++.|.+.|+.+++.
T Consensus 312 p-----------~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 312 P-----------LLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred e-----------EEEEeCCCCCcEEEEECcCCeE
Confidence 2 1455665789999999988754
No 251
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=1.3e-10 Score=99.88 Aligned_cols=272 Identities=18% Similarity=0.289 Sum_probs=171.2
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeCC-------ccccccccCc------------ccEEEEEEeCCC--CEEEEE
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL-------KEFSGFKSNS------------GLVKAIIISGDS--NKIFTG 179 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~-------~~~~~~~~h~------------~~V~~l~~s~~~--~~l~s~ 179 (473)
...|+++.++ |.||++|...|.|.+|.-. +-+..+++|. ..|..|.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568888887 8899999999999999632 2234455653 468889997665 345566
Q ss_pred eCCCeEEEEeCCCCCeeeEEee-----------ccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC
Q 012007 180 HQDGKIRIWKVSRKNASVHKRV-----------GSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG 248 (473)
Q Consensus 180 ~~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 248 (473)
+.|.+|++|.+........... +.+.....+.....+....+.......+....|.-.|.++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 7899999999876643221110 00001111111111222222222223333345888899999999988
Q ss_pred EEEEEeCCCCEEEEEcCCCe---eeEEeecCC-----CceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCc--ceee
Q 012007 249 LLYSGSWDKTLKVWRISDCK---CLESINAHD-----DAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGT--KHCL 316 (473)
Q Consensus 249 ~l~s~s~dg~v~vwd~~~~~---~~~~~~~~~-----~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~--~~~~ 316 (473)
.++++. |-.|.+|+++-.. .+..++.|. ..|++..|+|.. .+.-.+..|.|++-|++...... ....
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 888776 6789999986422 233334443 357778888875 67777889999999998321100 0000
Q ss_pred --------eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc------------ceE-----E
Q 012007 317 --------AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK------------MAV-----L 371 (473)
Q Consensus 317 --------~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~v-----~ 371 (473)
...+.+-...|..+.|+++|+++++-.. -+|+|||.+....+.....-|. ..| .
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 1112233456888999999999987654 5899999987665555443332 122 3
Q ss_pred EEEecCCEEEEEeCCCcEEEEecCC
Q 012007 372 CLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 372 ~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.++-+...+++|+..+..-+|-..+
T Consensus 344 sfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EecCCcccccccccccceeeecccc
Confidence 3445677899999888888887554
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.1e-09 Score=99.86 Aligned_cols=303 Identities=10% Similarity=0.157 Sum_probs=179.3
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEE-----eCC-----CeEEEEeCCCCC
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTG-----HQD-----GKIRIWKVSRKN 194 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-----~~d-----g~i~vwd~~~~~ 194 (473)
.|.+.+.+|+++|.+.. ..++|++.......+......+.++.|+|-|++|.+= ..+ -.+.+|+++++.
T Consensus 38 ~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~ 116 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGV 116 (566)
T ss_pred eeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccce
Confidence 35577778888887764 6899998654322222222379999999999998762 122 247799998843
Q ss_pred eeeEEeeccc----ccc---ceeEee-cCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC--EEEE-----EeCCCCE
Q 012007 195 ASVHKRVGSL----PTF---KDYVKS-SVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG--LLYS-----GSWDKTL 259 (473)
Q Consensus 195 ~~~~~~~~~~----~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~s-----~s~dg~v 259 (473)
.......... +.+ +.+... ..+...+.+..........-|...|+.+.++|.+. .+++ .+.-+.|
T Consensus 117 ~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~v 196 (566)
T KOG2315|consen 117 QRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASV 196 (566)
T ss_pred ehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEE
Confidence 3222221111 111 001110 11111222222222222223778899999999632 3333 2445679
Q ss_pred EEEEcCCCeeeEEe---ecCCCceeEEEEcCCC--EEEE--EeCC---------CcEEEEeCcccCCCcceeeeeeeccC
Q 012007 260 KVWRISDCKCLESI---NAHDDAINSVVAGFDS--LVFT--GSAD---------GTVKVWRRELQGKGTKHCLAQVLLKH 323 (473)
Q Consensus 260 ~vwd~~~~~~~~~~---~~~~~~v~~l~~~~~~--~l~s--~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~ 323 (473)
+||.+.....-..+ .-....-..+.|.+.+ +|+. ..-| .++++.++. + .........
T Consensus 197 ri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~--g-----~s~~V~L~k 269 (566)
T KOG2315|consen 197 RIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ--G-----ESVSVPLLK 269 (566)
T ss_pred EEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec--C-----ceEEEecCC
Confidence 99987632211111 0111222345676665 3332 2223 356666664 1 112233345
Q ss_pred CccEEEEEEccCCCEEEE--eCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCC---CcEEEEecCCCC
Q 012007 324 ENAVTALAVNQESAVVYC--GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD---RNICLWRREESG 398 (473)
Q Consensus 324 ~~~v~~l~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d---g~i~iwd~~~~~ 398 (473)
.++|.++.|+++++.+++ |-.-..+.|||++.... ..+....-...-+++.|++|+.++-+ |.|-|||+.+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-- 345 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-- 345 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe--EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc--
Confidence 789999999999966544 56678899999986322 23333333445677889999988865 7899999998
Q ss_pred ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee------CCCcEEEEEcCCC
Q 012007 399 AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS------LDKSVKVWRVSEH 455 (473)
Q Consensus 399 ~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s------~Dg~v~iW~i~~~ 455 (473)
.+++..+..-. -+-+.|+|||+ +|+|+. .|+.++||++...
T Consensus 346 -~K~i~~~~a~~--tt~~eW~PdGe-------------~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 346 -RKLIAKFKAAN--TTVFEWSPDGE-------------YFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred -hhhccccccCC--ceEEEEcCCCc-------------EEEEEeccccEEecCCeEEEEecCc
Confidence 67777776543 46689999999 565555 4788999998754
No 253
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=1.7e-11 Score=116.68 Aligned_cols=253 Identities=16% Similarity=0.237 Sum_probs=180.8
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC--Ce
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD--AV 238 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v 238 (473)
.+.+.++.++|.|+-+|.++.-| +.+-|+...-...... .|.. .|
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l--------------------------------~h~tpw~v 70 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL--------------------------------HHITPWQV 70 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee--------------------------------eccCcchh
Confidence 45678888999999999888876 5566766543222111 1322 35
Q ss_pred eEEEEcCC--CCEEEEEeCCCCEEEEEcCC---CeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCC
Q 012007 239 SCLSLNAE--QGLLYSGSWDKTLKVWRISD---CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 239 ~~l~~~~~--~~~l~s~s~dg~v~vwd~~~---~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
-...|++. ..+-++......-.+|++.. ......+.+|...|+.+.|.+.. .+++++.|-.+..||++
T Consensus 71 ad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~r----- 145 (1081)
T KOG0309|consen 71 ADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMR----- 145 (1081)
T ss_pred cceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeecc-----
Confidence 55667763 33444444455667898853 23344566899999999999886 89999999999999998
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec---CCEEEEEeCCCc
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA---GNLVFSGSADRN 388 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~ 388 (473)
....+......-......++|+-....+.+.+....|.+||++.+..+...+++|...+..+.++ -..+.+++.|++
T Consensus 146 Sp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t 225 (1081)
T KOG0309|consen 146 SPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT 225 (1081)
T ss_pred CCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence 34444555555566778899987555555667778899999999888888888988888888776 457889999999
Q ss_pred EEEEecCCCC----------------------------------------------------ceeEEEEecCCCCceeEE
Q 012007 389 ICLWRREESG----------------------------------------------------AHSCLAVLTGHTGPVKCL 416 (473)
Q Consensus 389 i~iwd~~~~~----------------------------------------------------~~~~~~~~~~h~~~V~~l 416 (473)
|++||..... ...++..+.||...|...
T Consensus 226 vkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eF 305 (1081)
T KOG0309|consen 226 VKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEF 305 (1081)
T ss_pred eeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHH
Confidence 9999976320 123456777888888777
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.|-..+.... ..+.+++.|+|-+.|.++++|-+.+
T Consensus 306 lWR~r~e~~~---d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 306 LWRKRKECDG---DYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhhhcccccC---CCCccceeEEEeecCCceEeeeccH
Confidence 7765543110 1245667999999999999999975
No 254
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.31 E-value=2.7e-09 Score=97.89 Aligned_cols=301 Identities=13% Similarity=0.120 Sum_probs=186.1
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCC---------------eEEEEeCCC
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG---------------KIRIWKVSR 192 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg---------------~i~vwd~~~ 192 (473)
++++.|.+|++.... .|.+|.....-.....-...|..+.|+|.++||.+=...+ .+.+||+.+
T Consensus 39 ~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s 117 (561)
T COG5354 39 SESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS 117 (561)
T ss_pred eecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC
Confidence 567778999888775 5889975422222222345699999999999999865543 489999999
Q ss_pred CCeeeEEeeccccccce-eEeecCCCcceEEEeecc--------eeeE--e--eccCCeeEEEEcCCC--CEEEE-----
Q 012007 193 KNASVHKRVGSLPTFKD-YVKSSVNPKNYVEVRRNR--------SVLK--I--RHYDAVSCLSLNAEQ--GLLYS----- 252 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~--~--~~~~~v~~l~~~~~~--~~l~s----- 252 (473)
+.....+.....+...- ++....++.....+.... .... + -....|....|+|.+ ..|+.
T Consensus 118 g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk 197 (561)
T COG5354 118 GMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEK 197 (561)
T ss_pred ceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEcccc
Confidence 98877776655552221 222222222111111100 0000 0 012457788888853 33333
Q ss_pred EeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-E-EE---EEe-------CCCcEEEEeCcccCCCcceeeeeee
Q 012007 253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-L-VF---TGS-------ADGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~-l~---s~~-------~dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
.+.++.+++|.+..+..+.+.......-..+.|.+.+ + ++ +-. ....+.+++++.. . ....
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-----~--i~V~ 270 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-----S--IPVE 270 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-----c--ccee
Confidence 3567889999998766655443333333456676666 1 11 111 1345777777521 1 1112
Q ss_pred ccCCccEEEEEEccCCCEEEE--eCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCC---CcEEEEecC
Q 012007 321 LKHENAVTALAVNQESAVVYC--GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD---RNICLWRRE 395 (473)
Q Consensus 321 ~~~~~~v~~l~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d---g~i~iwd~~ 395 (473)
....++|...+|.|.++.+++ |-.+..+.++|++.. +..........-..+++.+++++.++-| |.|-+||..
T Consensus 271 ~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 271 KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred ccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence 255789999999998766544 457889999999875 2233334444556678899999998866 679999987
Q ss_pred CCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee------CCCcEEEEEcCCC
Q 012007 396 ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS------LDKSVKVWRVSEH 455 (473)
Q Consensus 396 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s------~Dg~v~iW~i~~~ 455 (473)
+. ..++..+.+-. ..-+.|+|+++ ++.+.. .|..|+||++...
T Consensus 349 ~r--f~~~~~~~~~n--~s~~~wspd~q-------------F~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 349 GR--FKVAGAFNGLN--TSYCDWSPDGQ-------------FYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred Cc--eEEEEEeecCC--ceEeeccCCce-------------EEEecCCCcccccCcceEEEEecCc
Confidence 63 45555665543 35578999998 443332 4789999999754
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=4.4e-08 Score=86.82 Aligned_cols=273 Identities=9% Similarity=0.163 Sum_probs=176.7
Q ss_pred CCcEEEeeCCcc-----ccccccCcccEEEEEEeCCCCEEEEEeCC---CeEEEEeCCCC--CeeeEEeeccccccceeE
Q 012007 142 SKNIRVWKNLKE-----FSGFKSNSGLVKAIIISGDSNKIFTGHQD---GKIRIWKVSRK--NASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 142 dg~i~vwd~~~~-----~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~ 211 (473)
++-|++|++... ....-.+.+.++-|+|++++++|.++..+ |.|-.|.++.. ..........
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-------- 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-------- 86 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc--------
Confidence 467999986522 22234467889999999999999998765 67777777653 3222221110
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCC-CeeeE--EeecCCCc--------
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISD-CKCLE--SINAHDDA-------- 279 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~-~~~~~--~~~~~~~~-------- 279 (473)
...+-+.+++++++++|+++.. .|.|.++-+.. |.... .+..|.+.
T Consensus 87 ----------------------~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~ 144 (346)
T COG2706 87 ----------------------PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQES 144 (346)
T ss_pred ----------------------CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccC
Confidence 2233378999999999999874 47899998865 43322 22234444
Q ss_pred --eeEEEEcCCC-EEEEEeC-CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CCcEEEEecC
Q 012007 280 --INSVVAGFDS-LVFTGSA-DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DGLVNFWECE 354 (473)
Q Consensus 280 --v~~l~~~~~~-~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~ 354 (473)
+....+.|++ +|++..- -..|.+|++..+.. ...... .......-..|.|+|++++.++.++ +++|.+|...
T Consensus 145 ~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L-~~~~~~--~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 145 PHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKL-TPADPA--EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred CccceeeeCCCCCEEEEeecCCceEEEEEcccCcc-cccccc--ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 7778889998 5554433 35789999983322 222111 1244566789999999999877654 8899999887
Q ss_pred Cccccccee-----------ecCcceEEEEEecCCEEEEEeC-CCcEEEEecCCC-CceeEEEEecCCCCceeEEEEecC
Q 012007 355 KHLSHGGVL-----------RGHKMAVLCLAAAGNLVFSGSA-DRNICLWRREES-GAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 355 ~~~~~~~~~-----------~~~~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
........+ .........+++||++|.++.. ...|.+|.+... +....+.....+...-..+.|++.
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~ 301 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS 301 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC
Confidence 631111111 1223445678899999999853 347888888753 223444444445555788999999
Q ss_pred CCCCcccccCCCccEEEEEeeC-CCcEEEEEcCCCCCCcc
Q 012007 422 RDHDHEYHQKGDQRWTVYSGSL-DKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~s~s~-Dg~v~iW~i~~~~~~~~ 460 (473)
+. +|+.+.. +..|.++.+....-.+.
T Consensus 302 g~-------------~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 302 GR-------------FLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred CC-------------EEEEEccCCCcEEEEEEcCCCceEE
Confidence 88 5555554 55799999986554433
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=3.3e-09 Score=102.39 Aligned_cols=238 Identities=8% Similarity=-0.013 Sum_probs=135.7
Q ss_pred cEEEeeCC-ccccccccCcccEEEEEEeCCCCEE---EEEeCCC--eEEEEeCCCCCeeeEEeeccccccceeEeecCCC
Q 012007 144 NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKI---FTGHQDG--KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNP 217 (473)
Q Consensus 144 ~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l---~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (473)
.|.+.|.. .....+......+..-+|+|||+.+ ++...+| .|.+.++.+++......
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~----------------- 228 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA----------------- 228 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-----------------
Confidence 45555543 2233344455566778999999752 3444443 57777887765332221
Q ss_pred cceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CC----CEEEEEcCCC---eeeEEeecCCCceeEEEEcCCC
Q 012007 218 KNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DK----TLKVWRISDC---KCLESINAHDDAINSVVAGFDS 289 (473)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg----~v~vwd~~~~---~~~~~~~~~~~~v~~l~~~~~~ 289 (473)
........+|+|||+.|+..+. +| .+.+|++..+ +.......+........|+|++
T Consensus 229 ----------------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG 292 (428)
T PRK01029 229 ----------------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG 292 (428)
T ss_pred ----------------CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC
Confidence 2233446789999998887653 22 3444777653 3333333333344677999998
Q ss_pred -EEEE-EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC---CcEEEEecCCcccccceee
Q 012007 290 -LVFT-GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD---GLVNFWECEKHLSHGGVLR 364 (473)
Q Consensus 290 -~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~ 364 (473)
.|+. ...+|...+|.+....... ....+..+...+....|+|||+.|+....+ ..|.+||+.++........
T Consensus 293 ~~Laf~s~~~g~~~ly~~~~~~~g~---~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~ 369 (428)
T PRK01029 293 TRLVFVSNKDGRPRIYIMQIDPEGQ---SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS 369 (428)
T ss_pred CEEEEEECCCCCceEEEEECccccc---ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC
Confidence 4554 4456766666543211101 112233334566788999999988766443 3689999987543211111
Q ss_pred cCcceEEEEEecCCEEEEEeC---CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 365 GHKMAVLCLAAAGNLVFSGSA---DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 365 ~~~~~v~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
........+++||++|+.... ...|.+||+.++.. ..+ ....+.+...+|+|-
T Consensus 370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~~L---t~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT-RKI---VIGSGEKRFPSWGAF 425 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEe---ecCCCcccCceecCC
Confidence 122334667889988775433 34688888876322 222 223445677788875
No 257
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.27 E-value=1.6e-09 Score=105.54 Aligned_cols=177 Identities=14% Similarity=0.108 Sum_probs=113.4
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC---CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EE-EEEeCCC--cEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTGSADG--TVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~~~dg--~i~vwd~~ 306 (473)
+...+...+|+|+|++|+.+..+ ..|++||+.+++... +..+...+.++.|+|++ .| ++.+.++ .|.+||+.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 55568888999999999887654 479999998876543 33355566778999998 34 4555554 47778875
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CC--cEEEEecCCcccccceeecCcceEEEEEecCCEEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DG--LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.+. ...+..+........|+|+++.|+..+. ++ .|.++|+.+.........+.......++++|++|+.+
T Consensus 267 ~~~-------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 267 GKQ-------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred CCC-------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEE
Confidence 321 1222333444556789999988776543 33 5777787654322111122233345678889999988
Q ss_pred eCCC---cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 384 SADR---NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 384 ~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+.++ .|.+||+.++. . ..+... .......|+|++.
T Consensus 340 ~~~~~~~~i~~~d~~~~~-~---~~l~~~-~~~~~p~~spdg~ 377 (417)
T TIGR02800 340 HREGGGFNIAVMDLDGGG-E---RVLTDT-GLDESPSFAPNGR 377 (417)
T ss_pred EccCCceEEEEEeCCCCC-e---EEccCC-CCCCCceECCCCC
Confidence 8775 78889987732 2 222222 2345568999988
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=1.2e-09 Score=102.03 Aligned_cols=186 Identities=18% Similarity=0.262 Sum_probs=145.3
Q ss_pred cCCEEEEeeCCCcEEEeeCCcc--cccc---ccCcccEEEEEEe------C--------------CCCEEEEEeCCCeEE
Q 012007 132 SGDLLYTGSDSKNIRVWKNLKE--FSGF---KSNSGLVKAIIIS------G--------------DSNKIFTGHQDGKIR 186 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~~~--~~~~---~~h~~~V~~l~~s------~--------------~~~~l~s~~~dg~i~ 186 (473)
...++|....||.+|+|++.+. ...| ..-++..++..|. | |...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 3678999999999999996522 2222 2234555555552 1 345677888899999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
+|++..++........ +|.+.|.++.++.+-..|++++.|+.+..|+...
T Consensus 84 ~ys~~~g~it~~~st~------------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTD------------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred EEEecCCeEEEEEecC------------------------------CCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence 9999988766555433 3999999999999999999999999999999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-----CCEEE
Q 012007 267 CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-----SAVVY 340 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~ 340 (473)
.+.++.++.....+.+++++||+ .+++++ +.|++||++ ....+..+.+|.++|.+++|-.+ |.+++
T Consensus 134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~------~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 134 KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIE------TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEcc------CceEEEEecCCCcceEEEEEEEeccccccceee
Confidence 99999999999999999999997 666554 789999996 44467889999999999999876 55555
Q ss_pred Ee-CCCCcEEEEecCC
Q 012007 341 CG-SSDGLVNFWECEK 355 (473)
Q Consensus 341 ~~-~~dg~i~iwd~~~ 355 (473)
++ ..+..+.+|-.+.
T Consensus 206 ssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 206 SSAAAERGITVWVVEK 221 (541)
T ss_pred eccccccceeEEEEEc
Confidence 44 4456677886653
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.26 E-value=2.9e-08 Score=93.50 Aligned_cols=251 Identities=12% Similarity=0.176 Sum_probs=150.9
Q ss_pred EEEEEecCCEEEEeeC----CCcEEEeeCCc------cccccccCcccEEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCC
Q 012007 126 IYSLAASGDLLYTGSD----SKNIRVWKNLK------EFSGFKSNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVSRKN 194 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~----dg~i~vwd~~~------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~ 194 (473)
-.++++++++|++... +|.|..|+... .+............+++++++++|+++.. +|.|.++++....
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc
Confidence 3456678999888876 56888886442 12222223445668999999999999875 8999999998753
Q ss_pred eeeEEe-eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCCCe--e-
Q 012007 195 ASVHKR-VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCK--C- 269 (473)
Q Consensus 195 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~~~--~- 269 (473)
...... ...... ...+ ..........++.|+|+++++++... ...|.+|++.... .
T Consensus 121 ~l~~~~~~~~~~g------~g~~-------------~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 121 SLGEVVQTVRHEG------SGPN-------------PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT 181 (345)
T ss_dssp EEEEEEEEEESEE------EESS-------------TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred ccceeeeecccCC------CCCc-------------ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence 222211 100000 0000 00012345788999999999888753 3469999997654 2
Q ss_pred -eEEee-cCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCC-Ccceeeeeeec---cCCccEEEEEEccCCCEEEE
Q 012007 270 -LESIN-AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK-GTKHCLAQVLL---KHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 270 -~~~~~-~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~ 341 (473)
...+. .....-..+.|+|++ .+++...++.|.++++..... .........+. ........|+++|+|++|++
T Consensus 182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence 22232 344567889999997 445666788999998872211 11111111111 11236889999999999887
Q ss_pred eC-CCCcEEEEecCCc--c-cccceee--cCcceEEEEEecCCEEEEEe-CCCcEEEEecC
Q 012007 342 GS-SDGLVNFWECEKH--L-SHGGVLR--GHKMAVLCLAAAGNLVFSGS-ADRNICLWRRE 395 (473)
Q Consensus 342 ~~-~dg~i~iwd~~~~--~-~~~~~~~--~~~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~ 395 (473)
+. .++.|.+|++... . ....... +..-.-+.++++|++|+++. .++.|.+|+++
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 65 4568999998421 1 1111221 22234567778999998887 56789999885
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=3e-09 Score=99.49 Aligned_cols=204 Identities=14% Similarity=0.205 Sum_probs=141.2
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE----EcCC
Q 012007 171 GDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS----LNAE 246 (473)
Q Consensus 171 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~----~~~~ 246 (473)
|-..|+|....||.+++|+...++....+....... ........ . ...-.......++. -+.+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s--------~t~~~~~w-~----L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLS--------GTCTYTKW-G----LSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhcc--------CcceeEEE-E----EEeccchHHHHhHHHHhhccCC
Confidence 345689999999999999998886544332111000 00000000 0 00000000011111 1224
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeeeEEee--cCCCceeEEEEcCC-CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccC
Q 012007 247 QGLLYSGSWDKTLKVWRISDCKCLESIN--AHDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH 323 (473)
Q Consensus 247 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 323 (473)
-..++-|...|.|.+|++..++....+. .|.+.|+++.++.+ +.|.+++.|+.+..|+.. ...........
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~------~~~~~~~~~~~ 143 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK------EKVIIRIWKEQ 143 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc------cceeeeeeccC
Confidence 4578888899999999999999888876 68999999998766 489999999999999985 33345566677
Q ss_pred CccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-------CCEEEEE-eCCCcEEEEecC
Q 012007 324 ENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-------GNLVFSG-SADRNICLWRRE 395 (473)
Q Consensus 324 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~s~-~~dg~i~iwd~~ 395 (473)
...+.+++++||+..+++++ +.|++||+++. +....+.||...|.++++- |.+++++ ..+..|.+|-+.
T Consensus 144 ~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred CCccceEEEcCCCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 78899999999999999886 58999999985 4457889999999988862 5565554 456678888776
Q ss_pred C
Q 012007 396 E 396 (473)
Q Consensus 396 ~ 396 (473)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 5
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=7.3e-09 Score=101.07 Aligned_cols=196 Identities=11% Similarity=0.058 Sum_probs=120.6
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC---CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEE-EEeCCC--cEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF-TGSADG--TVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~-s~~~dg--~i~vwd~~ 306 (473)
+...+....|+|+|+.|+..+.+ ..|.+||+.+++... +....+.+....|+|++ .|+ +...+| .|.+||+.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 66678899999999998876643 359999998876543 22233445578999998 444 555555 57777876
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCC--cEEEEecCCcccccceeecCcceEEEEEecCCEEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDG--LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.+. ...+..+........|+|+++.|+..+ .+| .|.++|+.++........+.......++++|++|+..
T Consensus 276 ~~~-------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 276 SRQ-------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred CCC-------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 322 122333444566789999998776554 334 5777777654432222223333446788999988877
Q ss_pred eCC-C--cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc--EEEEEcCC
Q 012007 384 SAD-R--NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS--VKVWRVSE 454 (473)
Q Consensus 384 ~~d-g--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~--v~iW~i~~ 454 (473)
+.+ + .|.+||+.++. ...+.. ........|+|+++. ++++...+|. |.++++..
T Consensus 349 ~~~~~~~~l~~~dl~tg~-~~~lt~----~~~~~~p~~spdg~~------------i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGS-VRILTD----TSLDESPSVAPNGTM------------LIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EccCCceEEEEEECCCCC-EEEccC----CCCCCCceECCCCCE------------EEEEEecCCceEEEEEECCC
Confidence 643 3 47888988743 222221 122235689999883 4444444443 55666643
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.20 E-value=1.8e-09 Score=92.35 Aligned_cols=206 Identities=13% Similarity=0.122 Sum_probs=139.8
Q ss_pred ccCCeeEEEEcC---CCC-EEEEEeCCCCEEEEEcCCCeeeEEeecCC------CceeEEEEcCCC-EEEEEeCCCcEEE
Q 012007 234 HYDAVSCLSLNA---EQG-LLYSGSWDKTLKVWRISDCKCLESINAHD------DAINSVVAGFDS-LVFTGSADGTVKV 302 (473)
Q Consensus 234 ~~~~v~~l~~~~---~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~------~~v~~l~~~~~~-~l~s~~~dg~i~v 302 (473)
.+..+..+.|.. ++. .|+-+-.+|.|.++..........+++-. ....++.|++.+ .++++-.+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 344556666653 444 56667778999999876544444443211 123456677766 7888889999985
Q ss_pred EeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccc-cceeecCcceEEEEEec---C
Q 012007 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSH-GGVLRGHKMAVLCLAAA---G 377 (473)
Q Consensus 303 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~---~ 377 (473)
.+... ......+..+.|+-++....|+. +-+++++|+.|+.+..||++-.... -...+-|...|.++..+ +
T Consensus 148 v~~t~----~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~ 223 (339)
T KOG0280|consen 148 VYETE----MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKP 223 (339)
T ss_pred Eecce----eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCC
Confidence 55421 22333457889999999999986 4478999999999999999833322 22345678888888644 6
Q ss_pred CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 378 NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 378 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
.++++|+.|-.|++||.++. .+++..- .-.+.|..+.++|...+ .|+.++.-.-.+|-+++....
T Consensus 224 ~~I~TGsYDe~i~~~DtRnm--~kPl~~~-~v~GGVWRi~~~p~~~~------------~lL~~CMh~G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 224 TYIATGSYDECIRVLDTRNM--GKPLFKA-KVGGGVWRIKHHPEIFH------------RLLAACMHNGAKILDSSDKVL 288 (339)
T ss_pred ceEEEeccccceeeeehhcc--cCccccC-ccccceEEEEecchhhh------------HHHHHHHhcCceEEEeccccc
Confidence 79999999999999999964 3334332 23478999999997653 445555555577777766554
Q ss_pred C
Q 012007 458 D 458 (473)
Q Consensus 458 ~ 458 (473)
.
T Consensus 289 e 289 (339)
T KOG0280|consen 289 E 289 (339)
T ss_pred c
Confidence 4
No 263
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=5.8e-08 Score=101.42 Aligned_cols=313 Identities=12% Similarity=0.039 Sum_probs=178.6
Q ss_pred cccEEEEEe--cCCEEEEeeCCCcEEEe----eCCcccc-ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe
Q 012007 123 EGHIYSLAA--SGDLLYTGSDSKNIRVW----KNLKEFS-GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 123 ~~~V~~~~~--~g~~l~tg~~dg~i~vw----d~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
.+.|.++.+ +..-++.+..+|.|.+. +...... ....-...|.+++||||+..|+....+++|.+..- +.+.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceE
Confidence 355667764 46678888888989888 5443322 22334678999999999999999999999887643 2222
Q ss_pred eeEEeecccccc-ceeEeec-CCCcceEEEeecc--------e------eeEeeccCCeeEEEEcCCCCEEEEEeC---C
Q 012007 196 SVHKRVGSLPTF-KDYVKSS-VNPKNYVEVRRNR--------S------VLKIRHYDAVSCLSLNAEQGLLYSGSW---D 256 (473)
Q Consensus 196 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~--------~------~~~~~~~~~v~~l~~~~~~~~l~s~s~---d 256 (473)
.....+...... ...+.-. ............+ + ...+...+.-..|+|-.||.++|+.+. .
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~ 233 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET 233 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence 222222211100 0111000 0000000000000 0 001114445678999999999999874 2
Q ss_pred ---CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeC----CCcEEEEeCcccCCCcceeeeeeeccCCccEEE
Q 012007 257 ---KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSA----DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 257 ---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (473)
..++||+- .|.....-+.-.+--.+++|.|.|.++++.. ...|.+|..+.-. ...+..........|..
T Consensus 234 ~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr---hgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 234 GSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR---HGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE---eeeEecCCCCCCceeeE
Confidence 46999985 4665554444444556789999995444433 3567777654211 11122222345678999
Q ss_pred EEEccCCCEEEEeCCCCcEEEEecCCcccc-cceee-cCcceE--EEEEec-CCEEEEEeCCCcEEEEecC----CC---
Q 012007 330 LAVNQESAVVYCGSSDGLVNFWECEKHLSH-GGVLR-GHKMAV--LCLAAA-GNLVFSGSADRNICLWRRE----ES--- 397 (473)
Q Consensus 330 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~-~~~~~v--~~~~~~-~~~l~s~~~dg~i~iwd~~----~~--- 397 (473)
+.|++++..||....|. |.+|-..+..-. ++.+. .....+ ..|++. ...|...+.+|.+..++.. .+
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 99999999999987665 999987653211 11222 111112 333332 4455555555555443321 11
Q ss_pred ------------------------C--ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 398 ------------------------G--AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 398 ------------------------~--~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
. +..+...+. -..+|.+++|+++.. .+++-..||.|.+|.
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-------------~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-------------RFAVLTSDGSLSIYE 454 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC-------------eEEEEECCCCEEEEE
Confidence 0 000111121 246799999999987 688889999999999
Q ss_pred cCCC
Q 012007 452 VSEH 455 (473)
Q Consensus 452 i~~~ 455 (473)
....
T Consensus 455 ~~~~ 458 (928)
T PF04762_consen 455 WDLK 458 (928)
T ss_pred ecCC
Confidence 6554
No 264
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.18 E-value=5.1e-08 Score=93.45 Aligned_cols=290 Identities=12% Similarity=0.081 Sum_probs=157.8
Q ss_pred ecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccc--
Q 012007 131 ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPT-- 206 (473)
Q Consensus 131 ~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-- 206 (473)
..++.+++++.+|.|..+|.. +.+-.+............ ++..++.++.+|.+..+|..+++............
T Consensus 63 v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 140 (377)
T TIGR03300 63 VAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP 140 (377)
T ss_pred EECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC
Confidence 457788888888888888854 222222222111112222 45688888899999999998887765444322110
Q ss_pred --c--ceeEeecCCCc-ceEEEeecceeeEeeccCCeeEEE--EcC--CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCC
Q 012007 207 --F--KDYVKSSVNPK-NYVEVRRNRSVLKIRHYDAVSCLS--LNA--EQGLLYSGSWDKTLKVWRISDCKCLESINAHD 277 (473)
Q Consensus 207 --~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~--~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 277 (473)
. ..++....+.. ..+...................+. -+| .+..++.+..++.+..+|.++|+.+.......
T Consensus 141 p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 141 PLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred CEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence 0 01111111111 111111111111111111111000 001 23467888889999999999998776543210
Q ss_pred C----c------e-eEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 278 D----A------I-NSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 278 ~----~------v-~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
. . + ....+ .++.+++++.+|.+..||...++. ... .. .. ...... ..+..+++++.||
T Consensus 221 ~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~--~W~----~~-~~-~~~~p~--~~~~~vyv~~~~G 289 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRV--LWK----RD-AS-SYQGPA--VDDNRLYVTDADG 289 (377)
T ss_pred CCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcE--EEe----ec-cC-CccCce--EeCCEEEEECCCC
Confidence 0 0 1 01111 256888889999999999875431 111 11 11 111122 2456788888999
Q ss_pred cEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCc
Q 012007 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426 (473)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 426 (473)
.|..+|..++...-................+..|++++.+|.|+++|..+ .+.+..+..+...+..--...++
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~t---G~~~~~~~~~~~~~~~sp~~~~~---- 362 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSRED---GSFVARLKTDGSGIASPPVVVGD---- 362 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCC---CCEEEEEEcCCCccccCCEEECC----
Confidence 99999998765432211111111222233578999999999999999988 45566666555433322222233
Q ss_pred ccccCCCccEEEEEeeCCCcEEEE
Q 012007 427 EYHQKGDQRWTVYSGSLDKSVKVW 450 (473)
Q Consensus 427 ~~~~~~~~~~~l~s~s~Dg~v~iW 450 (473)
.|+.++.||.|..+
T Consensus 363 ----------~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 363 ----------GLLVQTRDGDLYAF 376 (377)
T ss_pred ----------EEEEEeCCceEEEe
Confidence 47888899999876
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=1.2e-08 Score=99.37 Aligned_cols=195 Identities=12% Similarity=0.068 Sum_probs=115.9
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC-C--CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EE-EEEeCCCc--EEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD-K--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTGSADGT--VKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d-g--~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~~~dg~--i~vwd~~ 306 (473)
+...+.+..|+|||+.|+..+.+ + .|++||+.+++... +...........|+|++ .| ++.+.+|. |.++|+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 55678889999999988876543 2 58899998876432 22223334567899998 34 45666776 6666665
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CC--cEEEEecCCcccccceeecCcceEEEEEecCCEEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DG--LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.+. ...+..+.......+|+||++.|+..+. ++ .|.++|+.++........++.....+++++|++|+..
T Consensus 295 tg~-------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 295 TKA-------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred CCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEE
Confidence 321 1223334455677899999988766543 44 4666677654332112223333335788999988776
Q ss_pred eC-CC--cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc--EEEEEcC
Q 012007 384 SA-DR--NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS--VKVWRVS 453 (473)
Q Consensus 384 ~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~--v~iW~i~ 453 (473)
+. ++ .|.++|+.++. .. .+... .......|+|+++. ++++...+|. +.+++..
T Consensus 368 ~~~~g~~~I~~~dl~~g~-~~---~lt~~-~~d~~ps~spdG~~------------I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 368 NRTNGKFNIARQDLETGA-MQ---VLTST-RLDESPSVAPNGTM------------VIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EecCCceEEEEEECCCCC-eE---EccCC-CCCCCceECCCCCE------------EEEEEecCCceEEEEEECC
Confidence 54 34 35556766632 12 22221 12234579999883 4555555554 5566654
No 266
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.17 E-value=4.4e-10 Score=94.40 Aligned_cols=232 Identities=18% Similarity=0.285 Sum_probs=140.7
Q ss_pred EEEEEec-CCEEEEeeCCCcEEEeeCC--------------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 126 IYSLAAS-GDLLYTGSDSKNIRVWKNL--------------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 126 V~~~~~~-g~~l~tg~~dg~i~vwd~~--------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
|..+.+. ...|+++..++.+...... ..+..+..|.++-.+-+.+-.++.++++..||.+.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 4445544 3456777666665555321 223334444444434444445678999999999999998
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-----CCCCEEEEEcC
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-----WDKTLKVWRIS 265 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-----~dg~v~vwd~~ 265 (473)
+...... .++... |.+. .+.+....++.+.++. .-+..+.|+++
T Consensus 119 ~~~~~~~-~~i~~~-----------------------------~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 119 DKDLALM-SRIPSI-----------------------------HSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred hHHHhhh-hhcccc-----------------------------cccc-cccceeecccEEecCCcceEeeccceeeeccc
Confidence 6521111 111100 1111 1122222344444432 12346667665
Q ss_pred CCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEe
Q 012007 266 DCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCG 342 (473)
Q Consensus 266 ~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~ 342 (473)
..+.+..-+.....|.+++-+|.. ++++|+.||.+-+||.+. ...+...+..|+.++..+-|+| ++..|+++
T Consensus 168 p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn-----~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 168 PIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARN-----VAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred ccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccc-----ccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence 444333222233458888888765 888999999999999983 3445677889999999999999 56889999
Q ss_pred CCCCcEEEEecCCcccc-----------------------cceeecCcceEEEEEecCCEEEEEeCCCcEEEEe
Q 012007 343 SSDGLVNFWECEKHLSH-----------------------GGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd 393 (473)
+.||.+.-||..+...- ...+......|..|..-|..|++|+.-+.|++++
T Consensus 243 sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 243 SEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 99999999997631110 0111122233445555588999999888888875
No 267
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=4.7e-10 Score=116.70 Aligned_cols=195 Identities=15% Similarity=0.266 Sum_probs=147.4
Q ss_pred ceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec-CCCceeEEEEcCCC-EEEEEeCCCcEEEEe
Q 012007 227 RSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA-HDDAINSVVAGFDS-LVFTGSADGTVKVWR 304 (473)
Q Consensus 227 ~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd 304 (473)
.......+-..|.++.-+|...+.++|+.||.|++|....++.+..+.. ....|+.+.|+..| .+..+..||.+.+|.
T Consensus 2200 ~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2200 ASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred ceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecc
Confidence 3444555778899999999999999999999999999988888877752 23678888887776 888889999999998
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC---CCCcEEEEecCCcccccceeecCcceEEEEE--ecCCE
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS---SDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNL 379 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~ 379 (473)
.. ..+......|+.....+.|-. ..+++++ .++.+.+||.-.......+...|...++++. |.-++
T Consensus 2280 ~~-------pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ql 2350 (2439)
T KOG1064|consen 2280 AS-------PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQL 2350 (2439)
T ss_pred cC-------CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceE
Confidence 75 223455667888888888875 4566543 4678999997543333333466777666665 66789
Q ss_pred EEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 380 VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
|++|+.+|.|++||++. .++...+.. ++ ... +|++|+..|.++||++....
T Consensus 2351 lisggr~G~v~l~D~rq---rql~h~~~~---------~~-~~~-------------~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQ---RQLRHTFQA---------LD-TRE-------------YFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred EEecCCcCcEEEeehHH---HHHHHHhhh---------hh-hhh-------------eeeccCcccceEEEEccccc
Confidence 99999999999999987 344333332 33 333 89999999999999998763
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.14 E-value=8.2e-08 Score=87.64 Aligned_cols=171 Identities=13% Similarity=0.066 Sum_probs=128.1
Q ss_pred cCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCC-eEEEEeCCCCCeeeEEeecccccccee
Q 012007 132 SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG-KIRIWKVSRKNASVHKRVGSLPTFKDY 210 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (473)
+|++++.-+. |...|.+.......-.+|.+.|.-..+..+++-++.|..|| .+-|+|..+++......
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~---------- 399 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK---------- 399 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC----------
Confidence 4888888886 67777766555555566888899999998888999999999 89999999887543332
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS- 289 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~- 289 (473)
.-+.|.++..+++|++++++.....|.+.|+.++.....-+...+-|+.+.|+|++
T Consensus 400 -----------------------~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr 456 (668)
T COG4946 400 -----------------------DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR 456 (668)
T ss_pred -----------------------CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence 56789999999999999999998999999999998766666677889999999998
Q ss_pred EEEEEeCC----CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC
Q 012007 290 LVFTGSAD----GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 290 ~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
+++-+--+ ..|+++|+..+. ..-+.+..++ =.+-+|.|++++|+--+
T Consensus 457 ~iAYafP~gy~tq~Iklydm~~~K----iy~vTT~ta~---DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYDMDGGK----IYDVTTPTAY---DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEecCcceeeeeEEEEecCCCe----EEEecCCccc---ccCcccCCCCcEEEEEe
Confidence 56555444 468999986321 1111111122 23457888888876543
No 269
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.11 E-value=4.9e-07 Score=77.94 Aligned_cols=193 Identities=10% Similarity=0.089 Sum_probs=117.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec-------CCCceeEEEEcCCC-------EEEEEeCCCcEEE
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA-------HDDAINSVVAGFDS-------LVFTGSADGTVKV 302 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-------~~~~v~~l~~~~~~-------~l~s~~~dg~i~v 302 (473)
.-.-++|+||+.+||.+...|+|+++|+... .+..+.. -..+|..+.|.+.. .|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 3457999999999999999999999999653 3333332 12456666664332 5777788888888
Q ss_pred EeCcccC--CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--c-C
Q 012007 303 WRRELQG--KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--A-G 377 (473)
Q Consensus 303 wd~~~~~--~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~-~ 377 (473)
|-+..+. .............+...|.++.++|..++|++|+.... ++ ....+....++++.. + .
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~-----~~s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QD-----GMSKASSCGLTAWRILSDSP 192 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CC-----ccccccccCceEEEEcCCCC
Confidence 8764321 11111112223345778999999999998888775432 00 011122223333332 1 1
Q ss_pred CEE-EEEeCCCc------EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEE
Q 012007 378 NLV-FSGSADRN------ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450 (473)
Q Consensus 378 ~~l-~s~~~dg~------i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW 450 (473)
-+. ++...|+. -.+|.+-+ .............|..|..+||+. +||+...+|.|.+|
T Consensus 193 yyk~v~~~~~~~~~~~~~~~~~~~~~---~~~fs~~~~~~d~i~kmSlSPdg~-------------~La~ih~sG~lsLW 256 (282)
T PF15492_consen 193 YYKQVTSSEDDITASSKRRGLLRIPS---FKFFSRQGQEQDGIFKMSLSPDGS-------------LLACIHFSGSLSLW 256 (282)
T ss_pred cEEEccccCccccccccccceeeccc---eeeeeccccCCCceEEEEECCCCC-------------EEEEEEcCCeEEEE
Confidence 111 12222221 23444433 222222233467899999999999 99999999999999
Q ss_pred EcCCCCC
Q 012007 451 RVSEHAP 457 (473)
Q Consensus 451 ~i~~~~~ 457 (473)
++.....
T Consensus 257 ~iPsL~~ 263 (282)
T PF15492_consen 257 EIPSLRL 263 (282)
T ss_pred ecCcchh
Confidence 9987643
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2.2e-07 Score=86.47 Aligned_cols=306 Identities=12% Similarity=0.113 Sum_probs=178.7
Q ss_pred cccEEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeC-----------CCeEEEEe
Q 012007 123 EGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ-----------DGKIRIWK 189 (473)
Q Consensus 123 ~~~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-----------dg~i~vwd 189 (473)
+.....++|-|.||+|--.-| |.+|--. ..++.+. |. .|.-+.|||+.+||+|=+. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 445667888899999998865 7899533 2333332 43 4899999999999999653 15799999
Q ss_pred CCCCCeeeEEeeccccc-cceeEeecCCCcceEE-------EeecceeeEee----ccCCeeEEEEcCCCCEEEEEeC--
Q 012007 190 VSRKNASVHKRVGSLPT-FKDYVKSSVNPKNYVE-------VRRNRSVLKIR----HYDAVSCLSLNAEQGLLYSGSW-- 255 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~s~s~-- 255 (473)
+.++.....+.....+. ...++.-+.+.+.+.. +.......++. .-..|....|+|.+++||-=..
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99998776665521111 1111111122211111 11111111111 2346777888888777664321
Q ss_pred ---CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEE----------EeCCCcEEEEeCcccCCCcceeeeeeec
Q 012007 256 ---DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFT----------GSADGTVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 256 ---dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s----------~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
-..+.+..+.+++.+++.+.+.-.=..+.|...| +|.. .+.-..+.|+.++..+ ......
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd------Ipve~v 442 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD------IPVEVV 442 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC------CCceee
Confidence 1246666777777666655544333344565555 3321 1111234455554211 112223
Q ss_pred cCCccEEEEEEccCCCEEEEeCC---CCcEEEEecCC-c--ccccceeecCcceEEEEEecCCEEEEEe---CCCcEEEE
Q 012007 322 KHENAVTALAVNQESAVVYCGSS---DGLVNFWECEK-H--LSHGGVLRGHKMAVLCLAAAGNLVFSGS---ADRNICLW 392 (473)
Q Consensus 322 ~~~~~v~~l~~~~~~~~l~~~~~---dg~i~iwd~~~-~--~~~~~~~~~~~~~v~~~~~~~~~l~s~~---~dg~i~iw 392 (473)
.-...|...+|-|.|+.+++-+. ..++.+|.+++ . ..+...+......-..++|.|++++.+. ..|.+.++
T Consensus 443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 34567889999999977665433 35788898873 1 1222233333344566788899988764 56889999
Q ss_pred ecCCCCceeEEEE-ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC------CCcEEEEEcCC
Q 012007 393 RREESGAHSCLAV-LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL------DKSVKVWRVSE 454 (473)
Q Consensus 393 d~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~------Dg~v~iW~i~~ 454 (473)
|+... .+... ...| -..+.+.|.|.|+ +++|++. |.--+||++..
T Consensus 523 D~~~a---~~k~~~~~eh-~~at~veWDPtGR-------------YvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 523 DTDYA---DLKDTASPEH-FAATEVEWDPTGR-------------YVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ecchh---hhhhccCccc-cccccceECCCCC-------------EEEEeeehhhhccccceEEEEeec
Confidence 98741 11111 1233 3468899999999 8888774 55577888864
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=2.6e-09 Score=101.83 Aligned_cols=244 Identities=14% Similarity=0.114 Sum_probs=164.5
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
......|++|+.+..+++.||.||.++|..+.+........--..+ ..-.....+-||...|.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~-----------------snLsmNQtLeGH~~sV~ 75 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAA-----------------SNLSMNQTLEGHNASVM 75 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccc-----------------cccchhhhhccCcceEE
Confidence 3466899999999999999999999999998765432221110000 00011123347999999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe--ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI--NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
.+.|+.+.+.|-+...+|-|.+|-+-.+.-...+ ...+..|.+++|..+| .+.....||.|.+=.++... ..
T Consensus 76 vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-----Iw 150 (1189)
T KOG2041|consen 76 VVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-----IW 150 (1189)
T ss_pred EEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-----ec
Confidence 9999999999999999999999999877654433 2355678899998887 77777788877665554111 00
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc----------e--eecCcceEEEE--------Eec
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG----------V--LRGHKMAVLCL--------AAA 376 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------~--~~~~~~~v~~~--------~~~ 376 (473)
-+.+.+ .....+.|++|.+.++.+-.+|.+.+||.+....... . ..+|...-.++ -|+
T Consensus 151 gKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd 228 (1189)
T KOG2041|consen 151 GKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD 228 (1189)
T ss_pred chhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC
Confidence 111111 1234688999999999999999999999764322110 0 11222222222 245
Q ss_pred CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC
Q 012007 377 GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD 444 (473)
Q Consensus 377 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D 444 (473)
...|+++..+|.++|-.-.+.. .++..-.+ -.|..+.|+++|. +|+.+|.|
T Consensus 229 rP~lavcy~nGr~QiMR~eND~--~Pvv~dtg--m~~vgakWnh~G~-------------vLAvcG~~ 279 (1189)
T KOG2041|consen 229 RPRLAVCYANGRMQIMRSENDP--EPVVVDTG--MKIVGAKWNHNGA-------------VLAVCGND 279 (1189)
T ss_pred CCEEEEEEcCceehhhhhcCCC--CCeEEecc--cEeecceecCCCc-------------EEEEccCc
Confidence 6789999999999998766642 33333233 5689999999998 88888865
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=4.1e-10 Score=104.06 Aligned_cols=214 Identities=14% Similarity=0.207 Sum_probs=145.1
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
+..+.+|...|..++--.+.+-+++++.|++|++|.+.......... ........
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-------------------------aCQfTY~a 782 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-------------------------ACQFTYQA 782 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-------------------------eeeeEhhh
Confidence 45688999999999888788899999999999999986542111000 00011124
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-----cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-----AHDDAINSVVAGFDS-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-----~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~ 307 (473)
|+.+|.++.|-.+.++++++ ||-|.+||.--++.+..+. +..+.|.|+.--... .++.++...+|+++|.+.
T Consensus 783 Hkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 783 HKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred ccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc
Confidence 99999999999988777654 7899999987777765432 122334444322223 444458899999999885
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE-EecCCEEEEEeCC
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL-AAAGNLVFSGSAD 386 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~s~~~d 386 (473)
.+-.... .+....+.+..+.+++..+.|+.++++-.+|.|.+.|.++++... ..+........+ +|..+.|+....|
T Consensus 861 ce~~~E~-kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN-swrpmecdllqlaapsdq~L~~sald 938 (1034)
T KOG4190|consen 861 CEWTCEL-KVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN-SWRPMECDLLQLAAPSDQALAQSALD 938 (1034)
T ss_pred ccceeeE-EeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec-cCCcccchhhhhcCchhHHHHhhccc
Confidence 4321111 111223445678999999999999999999999999999876543 222222223333 4667788888888
Q ss_pred CcEEE-EecCC
Q 012007 387 RNICL-WRREE 396 (473)
Q Consensus 387 g~i~i-wd~~~ 396 (473)
.++.+ |-...
T Consensus 939 HslaVnWhald 949 (1034)
T KOG4190|consen 939 HSLAVNWHALD 949 (1034)
T ss_pred ceeEeeehhcC
Confidence 88888 87655
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=7.3e-10 Score=102.46 Aligned_cols=283 Identities=13% Similarity=0.187 Sum_probs=176.9
Q ss_pred eeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc---------cccccccCcccEEEEEEeCCCCEEEEEeCCCe
Q 012007 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK---------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGK 184 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~---------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 184 (473)
...+.||+..|.++.. +.+-+++++.|++|++|.+.. ..-++..|+.+|..+.|-.+-++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 3457789998888764 366789999999999997542 344678899999999999998888765 788
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEE
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWR 263 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd 263 (473)
|.+||.--+....+...... -+....|.|+.- -+..+++.| +...+|+++|
T Consensus 806 iHlWDPFigr~Laq~~dapk---------------------------~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~D 857 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPK---------------------------EGAGGNIKCLEN-VDRHILIAGCSAESTVKLFD 857 (1034)
T ss_pred ceeecccccchhHhhhcCcc---------------------------cCCCceeEeccc-Ccchheeeeccchhhheeee
Confidence 99999765543322111100 012233444421 134455554 7888999999
Q ss_pred cCCCeeeEEee-----cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCC
Q 012007 264 ISDCKCLESIN-----AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337 (473)
Q Consensus 264 ~~~~~~~~~~~-----~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 337 (473)
.+.++...+++ +....+.+++..+.| .++++-.+|.|.+.|.+.+.....+ ...+.....++ .|..+
T Consensus 858 aRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw------rpmecdllqla-apsdq 930 (1034)
T KOG4190|consen 858 ARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSW------RPMECDLLQLA-APSDQ 930 (1034)
T ss_pred cccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccC------Ccccchhhhhc-CchhH
Confidence 99887766664 345678899998887 8999999999999999855422211 11122222222 24455
Q ss_pred EEEEeCCCCcEEE-EecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCC-CceeEEEEec--CCCCce
Q 012007 338 VVYCGSSDGLVNF-WECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREES-GAHSCLAVLT--GHTGPV 413 (473)
Q Consensus 338 ~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~--~h~~~V 413 (473)
.|+....|..+.+ |..-.+....+. +....+..-+..-|.-|+++.....+.+|.-... .....+..++ ...+..
T Consensus 931 ~L~~saldHslaVnWhaldgimh~q~-kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~l 1009 (1034)
T KOG4190|consen 931 ALAQSALDHSLAVNWHALDGIMHLQD-KPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTL 1009 (1034)
T ss_pred HHHhhcccceeEeeehhcCCeeeecc-CCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCcc
Confidence 6777777777877 765443322111 1111111122233666777777777888853220 0111122222 235677
Q ss_pred eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEE
Q 012007 414 KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKV 449 (473)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~i 449 (473)
++++.-|-.. .++.|...|.|.+
T Consensus 1010 Tala~LPLN~-------------afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1010 TALAPLPLNC-------------AFLAGNEHGAIAL 1032 (1034)
T ss_pred ceeeeccccc-------------hhhccCCCCceee
Confidence 8899888776 5778888888765
No 274
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=4.6e-08 Score=91.12 Aligned_cols=236 Identities=13% Similarity=0.112 Sum_probs=150.4
Q ss_pred CCcEEEeeCCcc-ccccccCcccEEEEEEeCCC--CEEEE-----EeCCCeEEEEeCCCCCeeeEEeeccccccceeEee
Q 012007 142 SKNIRVWKNLKE-FSGFKSNSGLVKAIIISGDS--NKIFT-----GHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKS 213 (473)
Q Consensus 142 dg~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~--~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 213 (473)
.+.+.+|++... ....+-|...|+.+.++|.+ ..||+ .|.-+.|+||...............+ .
T Consensus 145 ~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF------F-- 216 (566)
T KOG2315|consen 145 SNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF------F-- 216 (566)
T ss_pred cceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc------c--
Confidence 467999987641 12233467889999999873 34443 34556899998762221111000000 0
Q ss_pred cCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC-EEEEE--eCC---------CCEEEEEcCCCeeeEEeecCCCcee
Q 012007 214 SVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG-LLYSG--SWD---------KTLKVWRISDCKCLESINAHDDAIN 281 (473)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~--s~d---------g~v~vwd~~~~~~~~~~~~~~~~v~ 281 (473)
..+. -.+.|++-|. +|+.+ .-| .++++.++....+.-.+. ..++|.
T Consensus 217 --------------------kadk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVh 274 (566)
T KOG2315|consen 217 --------------------KADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVH 274 (566)
T ss_pred --------------------ccce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCce
Confidence 1111 2356766554 22222 222 358888887444443333 578999
Q ss_pred EEEEcCCC---EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC---CcEEEEecCC
Q 012007 282 SVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD---GLVNFWECEK 355 (473)
Q Consensus 282 ~l~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd~~~ 355 (473)
++.|++++ -++-|-.-..+.|+|++. ...+.-.+++=+++-|+|.|++|+.++.+ |.|.|||..+
T Consensus 275 dv~W~~s~~EF~VvyGfMPAkvtifnlr~---------~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 275 DVTWSPSGREFAVVYGFMPAKVTIFNLRG---------KPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred EEEECCCCCEEEEEEecccceEEEEcCCC---------CEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 99999998 344566678899999872 12223345667889999999999887664 7899999998
Q ss_pred cccccceeecCcceEEEEEecCCEEEEEeC------CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 356 HLSHGGVLRGHKMAVLCLAAAGNLVFSGSA------DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 356 ~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
......+......+..|+|||.+|+++.. |+.++||++.. ..+....- ......+.|-|-.
T Consensus 346 -~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG----~~l~~~~f-~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 346 -RKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG----SLLHEKMF-KSELLQVEWRPFN 412 (566)
T ss_pred -hhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC----ceeehhhh-hHhHhheeeeecC
Confidence 44555666777888999999999999875 68899999876 22322211 1146677777543
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=5.8e-08 Score=93.70 Aligned_cols=307 Identities=15% Similarity=0.138 Sum_probs=183.1
Q ss_pred cceeeeeeecccEEEEEec--------------CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCC---C-
Q 012007 114 GLIGSIVRKEGHIYSLAAS--------------GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGD---S- 173 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--------------g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~---~- 173 (473)
+++.++..|+..|+.+.|. .-+||++...|.|.+||.. ..+..+..|..+|..++|-+. .
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Sr 125 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSR 125 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcch
Confidence 5678888899999988752 1268888889999999965 445567778899999999653 3
Q ss_pred CEEEEEeCCCeEEEEeCCCCCeeeEEeeccc--------ccc-ceeEeecCCCcceE---------EEeecceeeEeecc
Q 012007 174 NKIFTGHQDGKIRIWKVSRKNASVHKRVGSL--------PTF-KDYVKSSVNPKNYV---------EVRRNRSVLKIRHY 235 (473)
Q Consensus 174 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 235 (473)
..|+.-.....|.+|+..+++.......... |.. ..+......+..+. ....+...+...|.
T Consensus 126 d~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~S 205 (1062)
T KOG1912|consen 126 DVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHS 205 (1062)
T ss_pred heeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCcc
Confidence 4677777788999999988875433222111 110 01111000000000 00000000111111
Q ss_pred C-------------------------CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-
Q 012007 236 D-------------------------AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS- 289 (473)
Q Consensus 236 ~-------------------------~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~- 289 (473)
+ ....++|+|.-+.++-......+.++|++-..++.......+.+.-+.+-|+.
T Consensus 206 dl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 206 DLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR 285 (1062)
T ss_pred chhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC
Confidence 1 01235667765555555667889999999888988888777777778887775
Q ss_pred --EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEE-----------EEccC-CCEEEEeCCCCcEEEEecCC
Q 012007 290 --LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTAL-----------AVNQE-SAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 290 --~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l-----------~~~~~-~~~l~~~~~dg~i~iwd~~~ 355 (473)
.|+++-.||.+.+|-.+................-...+.++ +..|. ...++.--.+|.+.+|.+.+
T Consensus 286 rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 286 RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred cceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 79999999999999766422211110000001111222222 22232 23344444567788887763
Q ss_pred cccccc------------------------------eeecCcceEEEEE-------------ecC-------CEEEEEeC
Q 012007 356 HLSHGG------------------------------VLRGHKMAVLCLA-------------AAG-------NLVFSGSA 385 (473)
Q Consensus 356 ~~~~~~------------------------------~~~~~~~~v~~~~-------------~~~-------~~l~s~~~ 385 (473)
+..... ...+|.....+.. +-+ .++|.|..
T Consensus 366 ~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~ 445 (1062)
T KOG1912|consen 366 GRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTN 445 (1062)
T ss_pred CCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecC
Confidence 221110 0012333222221 111 37889999
Q ss_pred CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 386 DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.|+|.++|+.+ ....+.+..|++.|.++.|.....
T Consensus 446 sGTV~vvdvst---~~v~~~fsvht~~VkgleW~g~ss 480 (1062)
T KOG1912|consen 446 SGTVDVVDVST---NAVAASFSVHTSLVKGLEWLGNSS 480 (1062)
T ss_pred CceEEEEEecc---hhhhhhhcccccceeeeeecccee
Confidence 99999999998 466677788999999999988765
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=5.4e-07 Score=96.13 Aligned_cols=259 Identities=9% Similarity=0.045 Sum_probs=151.8
Q ss_pred EEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE
Q 012007 165 KAIIISGD-SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243 (473)
Q Consensus 165 ~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 243 (473)
..++++++ ++.+++-..++.|++||..... ............. .. ......-.....|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~--------dG----------~~~~a~f~~P~GIav 631 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLR--------DG----------SFEDATFNRPQGLAY 631 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCC--------CC----------chhccccCCCcEEEE
Confidence 36788775 5566666677889999986432 2111100000000 00 000012334678999
Q ss_pred cCCCCEEEEEeC-CCCEEEEEcCCCeeeEEeecC-----------------CCceeEEEEcC-CC-EEEEEeCCCcEEEE
Q 012007 244 NAEQGLLYSGSW-DKTLKVWRISDCKCLESINAH-----------------DDAINSVVAGF-DS-LVFTGSADGTVKVW 303 (473)
Q Consensus 244 ~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~-----------------~~~v~~l~~~~-~~-~l~s~~~dg~i~vw 303 (473)
+++++.|+++.. .+.|+++|+.++.. .++.+. -..-..+++++ ++ ++++...++.|++|
T Consensus 632 d~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~ 710 (1057)
T PLN02919 632 NAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEY 710 (1057)
T ss_pred eCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEE
Confidence 998887777654 56799999877653 333110 11235788888 45 55667778999999
Q ss_pred eCcccCCCcce--eeeeeec------cCCccEEEEEEccCCCE-EEEeCCCCcEEEEecCCcccccc------------e
Q 012007 304 RRELQGKGTKH--CLAQVLL------KHENAVTALAVNQESAV-VYCGSSDGLVNFWECEKHLSHGG------------V 362 (473)
Q Consensus 304 d~~~~~~~~~~--~~~~~~~------~~~~~v~~l~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~------------~ 362 (473)
|...+...... -...... ..-.....|+++|++.. +++-..++.|++||+.++..... .
T Consensus 711 d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~ 790 (1057)
T PLN02919 711 NISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFK 790 (1057)
T ss_pred ECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccc
Confidence 98632110000 0000000 01134567999999884 45556678999999875431100 0
Q ss_pred e-----------ecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEE----------ecCCCCceeEEEEecC
Q 012007 363 L-----------RGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV----------LTGHTGPVKCLAVEED 421 (473)
Q Consensus 363 ~-----------~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~h~~~V~~l~~~~~ 421 (473)
+ ..|. .-.+++++|+++++-..++.|++||..++........ ..+.-.....|+++++
T Consensus 791 fG~~dG~g~~~~l~~P-~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 791 FGDHDGVGSEVLLQHP-LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred ccCCCCchhhhhccCC-ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 0 0011 1245667788888888999999999987321111100 0112235678999999
Q ss_pred CCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 422 RDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+. ++++-+.++.|++||+.++..
T Consensus 870 G~-------------lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 870 GR-------------LFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CC-------------EEEEECCCCEEEEEECCCCcc
Confidence 87 888888999999999987653
No 277
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.02 E-value=1.2e-06 Score=80.75 Aligned_cols=242 Identities=10% Similarity=0.088 Sum_probs=140.0
Q ss_pred EEecCCEEEEeeC----------CCcEEEeeCC--ccccccccC-------cccEEEEEEeCCCCEEEEEe-C-CCeEEE
Q 012007 129 LAASGDLLYTGSD----------SKNIRVWKNL--KEFSGFKSN-------SGLVKAIIISGDSNKIFTGH-Q-DGKIRI 187 (473)
Q Consensus 129 ~~~~g~~l~tg~~----------dg~i~vwd~~--~~~~~~~~h-------~~~V~~l~~s~~~~~l~s~~-~-dg~i~v 187 (473)
+++||+.|+++.. +..|.|||.. +.+..+... ...-..++++|||++|+... . +..|-+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998777755 7899999976 333333321 22344789999999999776 3 689999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISD 266 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~ 266 (473)
.|+.+++......+... ...+ -...-..+..+.|+.++... ..+|....=.
T Consensus 133 vD~~~~kvv~ei~vp~~---~~vy----------------------~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~--- 184 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDC---YHIF----------------------PTANDTFFMHCRDGSLAKVGYGTKGNPKIKP--- 184 (352)
T ss_pred EECCCCcEEEEEeCCCC---cEEE----------------------EecCCccEEEeecCceEEEEecCCCceEEee---
Confidence 99999987665543210 0000 00111111222333333222 1222211000
Q ss_pred CeeeEEeecCCCceeEE-EEcC-CC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeec-------cCCccEEEEEEccCC
Q 012007 267 CKCLESINAHDDAINSV-VAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLL-------KHENAVTALAVNQES 336 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l-~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~~~ 336 (473)
...+.....++..- .+.+ ++ +++.... |.|.+.|+........ .....+. -....+.-+++++++
T Consensus 185 ---~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 185 ---TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-PAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred ---eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec-ceeeeccccccccccCCCcceeEEEcCCC
Confidence 00111100000000 2233 55 4444444 9999999653321111 1111111 123444559999999
Q ss_pred CEEEEeC----------CCCcEEEEecCCcccccceeecCcceEEEEEecCC-EEEEEe-CCCcEEEEecCCCCceeEEE
Q 012007 337 AVVYCGS----------SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-LVFSGS-ADRNICLWRREESGAHSCLA 404 (473)
Q Consensus 337 ~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~ 404 (473)
+.+++.. ..+.|.++|..+.+.......++...-..+++|++ +|++.. .++.|.++|..+ .+.+.
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t---~k~i~ 336 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET---GKELS 336 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC---CeEEe
Confidence 9888743 12479999999988877777788888889999999 777666 578899999988 45555
Q ss_pred Ee
Q 012007 405 VL 406 (473)
Q Consensus 405 ~~ 406 (473)
.+
T Consensus 337 ~i 338 (352)
T TIGR02658 337 SV 338 (352)
T ss_pred ee
Confidence 54
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.00 E-value=8.6e-07 Score=94.59 Aligned_cols=253 Identities=9% Similarity=0.036 Sum_probs=147.8
Q ss_pred EEEec-CCEEEEeeCCCcEEEeeCCcccccccc---------------CcccEEEEEEeCCCCEEEEEeC-CCeEEEEeC
Q 012007 128 SLAAS-GDLLYTGSDSKNIRVWKNLKEFSGFKS---------------NSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKV 190 (473)
Q Consensus 128 ~~~~~-g~~l~tg~~dg~i~vwd~~~~~~~~~~---------------h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~ 190 (473)
++..+ +.++++-..++.|++||.........+ +-.....|++.++++.|+.+.. .+.|+++|.
T Consensus 574 avd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~ 653 (1057)
T PLN02919 574 AIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 653 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEec
Confidence 34433 556677677888999986533221111 1123578999998887766654 467999998
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
.++........+.... ...... .... ..-..-..++++| ++.++++.+.++.|++||..++..
T Consensus 654 ~~~~V~tlag~G~~g~-------~~~gg~------~~~~---~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 654 VNETVRTLAGNGTKGS-------DYQGGK------KGTS---QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred CCCEEEEEeccCcccC-------CCCCCh------hhhH---hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 7764322111100000 000000 0000 0012335789999 555666667788999999987654
Q ss_pred eEEeec---------------CCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcce-------eeeeeec----
Q 012007 270 LESINA---------------HDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKH-------CLAQVLL---- 321 (473)
Q Consensus 270 ~~~~~~---------------~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~~---- 321 (473)
.. +.+ .-.....|++++++ ++++-+.++.|++||+..+...... .....+.
T Consensus 718 ~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 718 RV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred EE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 32 111 01234568898886 5556667899999998743210000 0000000
Q ss_pred ----cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec--------------CcceEEEEEecCCEEEEE
Q 012007 322 ----KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG--------------HKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 322 ----~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~l~s~ 383 (473)
..-.....++++++|.++++-..++.|++||..++......-.+ ....-.+++++|+++++-
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 01112468899999998888899999999998764322100000 011235667789998988
Q ss_pred eCCCcEEEEecCCC
Q 012007 384 SADRNICLWRREES 397 (473)
Q Consensus 384 ~~dg~i~iwd~~~~ 397 (473)
+.++.|++||+.++
T Consensus 877 t~Nn~Irvid~~~~ 890 (1057)
T PLN02919 877 TNNSLIRYLDLNKG 890 (1057)
T ss_pred CCCCEEEEEECCCC
Confidence 89999999999874
No 279
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=3.4e-07 Score=88.54 Aligned_cols=201 Identities=12% Similarity=0.015 Sum_probs=113.7
Q ss_pred CCeeEEEEcCCCCE---EEEEeCCC--CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEe-CCC----cEEEEe
Q 012007 236 DAVSCLSLNAEQGL---LYSGSWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS-ADG----TVKVWR 304 (473)
Q Consensus 236 ~~v~~l~~~~~~~~---l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~-~dg----~i~vwd 304 (473)
..+..-.|+|||+. +++...+| .|.+.++..++.... ....+......|+||| .|+..+ .+| .+.+|+
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 34556689999874 23444444 478888877754332 2234445567899998 554433 333 334466
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEE--ecCCcccccceeecC--cceEEEEEecCCE
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFW--ECEKHLSHGGVLRGH--KMAVLCLAAAGNL 379 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~--~~~v~~~~~~~~~ 379 (473)
+..+.. .................+|+|||+.|+..+ .+|...+| ++.........+..+ ......++|||++
T Consensus 264 ~~~g~~---g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 264 LETGAI---GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred cccCCC---CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence 543211 111122222223446789999999776654 56655555 443211111122222 2234678899998
Q ss_pred EEEEeCC---CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC--CCcEEEEEcCC
Q 012007 380 VFSGSAD---RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWRVSE 454 (473)
Q Consensus 380 l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~--Dg~v~iW~i~~ 454 (473)
|+..+.+ ..|.+||+.++.. ..+......+....|+||++. +++++.. +..|.+|++..
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~------------L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLH------------LVYSAGNSNESELYLISLIT 404 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCE------------EEEEECCCCCceEEEEECCC
Confidence 8876543 3699999987432 222222345678999999883 3444443 34688888876
Q ss_pred CC
Q 012007 455 HA 456 (473)
Q Consensus 455 ~~ 456 (473)
++
T Consensus 405 g~ 406 (428)
T PRK01029 405 KK 406 (428)
T ss_pred CC
Confidence 54
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.97 E-value=3.7e-07 Score=95.51 Aligned_cols=242 Identities=14% Similarity=0.135 Sum_probs=154.7
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEE----eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIW----KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
..+.|.++.+-++...|+.+..+|.|.+. +........... -.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---------------------------------vd 120 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS---------------------------------VD 120 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE---------------------------------Ec
Confidence 45789999999999999999999999999 544443322221 55
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCc-----eeEEEEcCCCEEEEEeCCCcEE--EEeCccc
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA-----INSVVAGFDSLVFTGSADGTVK--VWRRELQ 308 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-----v~~l~~~~~~~l~s~~~dg~i~--vwd~~~~ 308 (473)
..|.+++|+||+..|+..+.+++|.+.+ ++.+.+.+...+... -..+-|.....-+=|+..+... +-|..
T Consensus 121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~-- 197 (928)
T PF04762_consen 121 SGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT-- 197 (928)
T ss_pred CcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC--
Confidence 7899999999999999999999998886 567776665543221 1222232222111111111100 00000
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC---C---CcEEEEecCCcccccceeecCcceEEEEEecCCEEEE
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS---D---GLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFS 382 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 382 (473)
....-...+. ....-..|+|-.||.++|+.+. . ..|+||+-+............-....+|.|.|++||+
T Consensus 198 ---~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 198 ---VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIAS 273 (928)
T ss_pred ---CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEE
Confidence 0000011122 4556678999999999998774 2 4799999774222212222222345678889999999
Q ss_pred EeC---CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 383 GSA---DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 383 ~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
... ...|.+|..+.-..++..-.+......|..|+|++++. +||..-.|. |.+|...+.
T Consensus 274 ~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-------------iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE-------------ILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred EEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC-------------EEEEEecCC-ceEEEeeCC
Confidence 864 45688898776433333333334567899999999998 888877665 999988764
No 281
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.4e-08 Score=89.50 Aligned_cols=247 Identities=14% Similarity=0.114 Sum_probs=167.7
Q ss_pred eecccEEEEEec-CCEEEEeeCCCcEEEeeCC-----ccccccccCcccEEEEEEeCCCCEEEEEeC-CCeEEEEeCCCC
Q 012007 121 RKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVSRK 193 (473)
Q Consensus 121 ~h~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~-----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~ 193 (473)
-|.+.|+.+.+. .+++.+++.||.++.|.-. +-+..+..|-+.|.+++.+-++.++.|.+. |..++++|+++-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 367777777776 7899999999999999744 345567789999999999999999999777 999999999987
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC--eeeE
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC--KCLE 271 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~--~~~~ 271 (473)
....-.....+|.......+ ..+.+. ..-++.-.++.+.++|-... +...
T Consensus 87 DminmiKL~~lPg~a~wv~s--------------------kGd~~s--------~IAVs~~~sg~i~VvD~~~d~~q~~~ 138 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTS--------------------KGDKIS--------LIAVSLFKSGKIFVVDGFGDFCQDGY 138 (558)
T ss_pred chhhhcccccCCCceEEecC--------------------CCCeee--------eEEeecccCCCcEEECCcCCcCccce
Confidence 76554444444322111100 111111 12223346788999997643 3344
Q ss_pred EeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcc-cCCC--------cceeeeeeeccCCccEEEEEEccCCCEEEE
Q 012007 272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRREL-QGKG--------TKHCLAQVLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~-~~~~--------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
.-+.|..+|.++.+.+.+ .+++....|.|..|.... .... ........+.......+++.|+|++..+.+
T Consensus 139 fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist 218 (558)
T KOG0882|consen 139 FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST 218 (558)
T ss_pred ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence 445799999999998887 777888899999998762 0000 001112223345567789999999999999
Q ss_pred eCCCCcEEEEecCCcccccce-------------------------------eecCcc---eEEEEEecCCEEEEEeCCC
Q 012007 342 GSSDGLVNFWECEKHLSHGGV-------------------------------LRGHKM---AVLCLAAAGNLVFSGSADR 387 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~~~~~~-------------------------------~~~~~~---~v~~~~~~~~~l~s~~~dg 387 (473)
-..|..|++++.+++...... +..|.. .-.++.-.|++|+-|+-=|
T Consensus 219 l~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 219 LNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG 298 (558)
T ss_pred cCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence 999999999998764321110 111221 1234445589999888665
Q ss_pred cEEEEecCC
Q 012007 388 NICLWRREE 396 (473)
Q Consensus 388 ~i~iwd~~~ 396 (473)
|++.++.+
T Consensus 299 -ikvin~~t 306 (558)
T KOG0882|consen 299 -IKVINLDT 306 (558)
T ss_pred -EEEEEeec
Confidence 88998887
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.95 E-value=1.6e-07 Score=79.57 Aligned_cols=192 Identities=11% Similarity=0.024 Sum_probs=128.3
Q ss_pred CCEEEEeeCCCcEEEeeCCcc---ccccccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 133 GDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~---~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
-.+||.||.-|...+|..... ......|...|+-+.=.- ..-.+..++.|.++++.+++.+......
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--------- 154 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--------- 154 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee---------
Confidence 348999999999999975521 222223333332221111 1235667788989999888765432222
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCC--eeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-eeeEE--eecCCCceeEE
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDA--VSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLES--INAHDDAINSV 283 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~-~~~~~--~~~~~~~v~~l 283 (473)
|... +.++.++++++++++.+....|..|.+... +.+.. .....+.-.+.
T Consensus 155 -------------------------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 155 -------------------------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred -------------------------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 3333 778999999999999999999999998643 32222 22334445667
Q ss_pred EEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC--CEEEEeCCCCcEEEEecCCcccc
Q 012007 284 VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES--AVVYCGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 284 ~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 359 (473)
.|+... .++++..||++.|||++...... .........|.+++..+.|++.| .+|+..-.-+.+.+.|+++....
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm-~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPM-AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccch-hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 777665 89999999999999998644321 12223445689999999999866 35555555678999999876544
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=6.3e-09 Score=99.58 Aligned_cols=224 Identities=16% Similarity=0.158 Sum_probs=151.6
Q ss_pred EEEeeCCCcEEEeeCCcc-----ccccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 136 LYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 136 l~tg~~dg~i~vwd~~~~-----~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
+++-+ ...-.+|++.+. .-.+.+|..+|+.+-|.++. ..|++++.|-.+..||+.+.........
T Consensus 85 iVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-------- 155 (1081)
T KOG0309|consen 85 IVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-------- 155 (1081)
T ss_pred EEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee--------
Confidence 44333 345568875522 22457899999999998865 4789999999999999987653221111
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-eeeEEeecCCCceeEEEEcCC
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINSVVAGFD 288 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~~~~ 288 (473)
.-......++|+-....+.+.+....|.+||++.| .++..+++|...|+.+.|..-
T Consensus 156 -----------------------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~ 212 (1081)
T KOG0309|consen 156 -----------------------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRF 212 (1081)
T ss_pred -----------------------cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhh
Confidence 12334567888875555666666788999999865 567889999999999988654
Q ss_pred --CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE--eCCCCcEEEE---------ecCC
Q 012007 289 --SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC--GSSDGLVNFW---------ECEK 355 (473)
Q Consensus 289 --~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~~~dg~i~iw---------d~~~ 355 (473)
+.+.+++.||+|+.||...... ..........+|..-.+.|-|.-.+. .-.+..+.++ +..+
T Consensus 213 ~~s~~~s~~~d~tvkfw~y~kSt~-----e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~ 287 (1081)
T KOG0309|consen 213 KYSEIMSSSNDGTVKFWDYSKSTT-----ESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFD 287 (1081)
T ss_pred hhhhhcccCCCCceeeeccccccc-----ccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcccc
Confidence 3899999999999999873322 12223334556666666664432222 1112234443 3334
Q ss_pred cccccceeecCcceEEEEEec------------CCEEEEEeCCCcEEEEecCC
Q 012007 356 HLSHGGVLRGHKMAVLCLAAA------------GNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 356 ~~~~~~~~~~~~~~v~~~~~~------------~~~l~s~~~dg~i~iwd~~~ 396 (473)
.......+.||...|..|-|- .-.|++-+.|..+++|-+.+
T Consensus 288 ~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 288 LNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 556667888999988776541 23699999999999998864
No 284
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.93 E-value=9.2e-09 Score=88.75 Aligned_cols=243 Identities=15% Similarity=0.228 Sum_probs=147.5
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
....|+++.|...|.||++|...|.|.++.-+...-........+..... . ...+....-...|.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~-------E--------FDYLkSleieEKin 89 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL-------E--------FDYLKSLEIEEKIN 89 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhccccc-------c--------hhhhhhccHHHHhh
Confidence 34679999999999999999999999999765443111111000000000 0 00001112345677
Q ss_pred EEEEcCCC--CEEEEEeCCCCEEEEEcCCCe-------------------------------------ee-----EEe-e
Q 012007 240 CLSLNAEQ--GLLYSGSWDKTLKVWRISDCK-------------------------------------CL-----ESI-N 274 (473)
Q Consensus 240 ~l~~~~~~--~~l~s~s~dg~v~vwd~~~~~-------------------------------------~~-----~~~-~ 274 (473)
.|.|..++ ..++..+.|.+|++|.+.... .+ +.. .
T Consensus 90 ~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaN 169 (460)
T COG5170 90 AIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYAN 169 (460)
T ss_pred heeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccc
Confidence 88887643 356666779999999874320 00 001 3
Q ss_pred cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCC-----ccEEEEEEccCC-CEEEEeCCCCcE
Q 012007 275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHE-----NAVTALAVNQES-AVVYCGSSDGLV 348 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~v~~l~~~~~~-~~l~~~~~dg~i 348 (473)
+|.-.++++.+..+...+..+.|-.|.+|+++..+. ... +....+|. .-|++..|+|.. ..+.-.++.|.|
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~--sFn-IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDG--SFN-IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCC--ceE-EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 566677888888887666677889999999874331 111 12223332 357888899854 556667778999
Q ss_pred EEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 349 NFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
++-|++..... |..-+++...-. ..-..-+.+-...|..+.|+++++
T Consensus 247 kl~DlRq~alc--------------------------dn~~klfe~~~D--~v~~~ff~eivsSISD~kFs~ngr----- 293 (460)
T COG5170 247 KLNDLRQSALC--------------------------DNSKKLFELTID--GVDVDFFEEIVSSISDFKFSDNGR----- 293 (460)
T ss_pred Eehhhhhhhhc--------------------------cCchhhhhhccC--cccchhHHHHhhhhcceEEcCCCc-----
Confidence 99998753221 111122221110 011222334456789999999998
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
++++-+. -+|+|||+...+.+++.+
T Consensus 294 --------yIlsRdy-ltvkiwDvnm~k~pikTi 318 (460)
T COG5170 294 --------YILSRDY-LTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred --------EEEEecc-ceEEEEecccccCCceee
Confidence 7777665 589999999888777655
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.92 E-value=3.8e-08 Score=88.07 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=107.3
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee----eEEeecCCCceeEEEEcCC-CEEEEE---eCCCcEEEEeCcccC
Q 012007 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC----LESINAHDDAINSVVAGFD-SLVFTG---SADGTVKVWRRELQG 309 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~----~~~~~~~~~~v~~l~~~~~-~~l~s~---~~dg~i~vwd~~~~~ 309 (473)
...+..++.+.+||++..+....++++..... +...... ..-+++.+..+ ..+..+ +....+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 34456778899999998888877777754332 2222211 12223333222 233333 3334455554431
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCc
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRN 388 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~ 388 (473)
.....+.+|-+.++.++++||+++|+++..|..|++-.............||..-|..++.. +..|++|+.|++
T Consensus 142 -----~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~t 216 (390)
T KOG3914|consen 142 -----GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKT 216 (390)
T ss_pred -----cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCc
Confidence 12345678999999999999999999999999999988887777777888999999888854 667899999999
Q ss_pred EEEEecCCC
Q 012007 389 ICLWRREES 397 (473)
Q Consensus 389 i~iwd~~~~ 397 (473)
|++||+.++
T Consensus 217 lr~Wd~~sg 225 (390)
T KOG3914|consen 217 LRLWDITSG 225 (390)
T ss_pred EEEEecccC
Confidence 999999985
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.91 E-value=3.1e-08 Score=83.53 Aligned_cols=156 Identities=18% Similarity=0.241 Sum_probs=99.3
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee-eEEeec-CCCceeEEEEcCCCEEEEEeC------CCcEEEEeC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC-LESINA-HDDAINSVVAGFDSLVFTGSA------DGTVKVWRR 305 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~-~~~~v~~l~~~~~~~l~s~~~------dg~i~vwd~ 305 (473)
|.++-.+-+.+-.++.+++++.||.+.+++.+.-.. .+.+.. |.+. .+.++...+.++.... -+..+.|++
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~ 166 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTL 166 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecc
Confidence 444333334444567899999999999999765211 111111 1111 1112222222232222 344566666
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe---cCCEEE
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA---AGNLVF 381 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~ 381 (473)
+. ...+.... .....|++++-+|. ...+++|+.||.+-+||.+....+...+..|+.++..+.+ ++..|+
T Consensus 167 ~p-----~~t~~~~~-~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 167 DP-----IKTLIPSK-KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred cc-----cccccccc-cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 52 11111111 12234999999994 5778889999999999999887777888899999877765 378999
Q ss_pred EEeCCCcEEEEecCC
Q 012007 382 SGSADRNICLWRREE 396 (473)
Q Consensus 382 s~~~dg~i~iwd~~~ 396 (473)
++++||.+..||..+
T Consensus 241 t~sedGslw~wdas~ 255 (319)
T KOG4714|consen 241 TCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCcEEEEcCCC
Confidence 999999999999874
No 287
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.86 E-value=9e-07 Score=78.94 Aligned_cols=224 Identities=13% Similarity=0.071 Sum_probs=131.6
Q ss_pred CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEE
Q 012007 182 DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV 261 (473)
Q Consensus 182 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~v 261 (473)
+|.|..||..+++......... -.....+. ..+++..+++++.++.|..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~------------------------------~~~~~~~~-~~~~~~~v~~~~~~~~l~~ 50 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP------------------------------GIGGPVAT-AVPDGGRVYVASGDGNLYA 50 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS------------------------------SCSSEEET-EEEETTEEEEEETTSEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCC------------------------------CCCCccce-EEEeCCEEEEEcCCCEEEE
Confidence 6889999998887766554321 01111111 2235677888889999999
Q ss_pred EEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceee-eeeeccCCccEEEEEEccCCCEEE
Q 012007 262 WRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCL-AQVLLKHENAVTALAVNQESAVVY 340 (473)
Q Consensus 262 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~ 340 (473)
||..+|+.+..+.... .+.......++.++.++.++.|..+|..++.. .... ........ ..........+..++
T Consensus 51 ~d~~tG~~~W~~~~~~-~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~--~W~~~~~~~~~~~-~~~~~~~~~~~~~~~ 126 (238)
T PF13360_consen 51 LDAKTGKVLWRFDLPG-PISGAPVVDGGRVYVGTSDGSLYALDAKTGKV--LWSIYLTSSPPAG-VRSSSSPAVDGDRLY 126 (238)
T ss_dssp EETTTSEEEEEEECSS-CGGSGEEEETTEEEEEETTSEEEEEETTTSCE--EEEEEE-SSCTCS-TB--SEEEEETTEEE
T ss_pred EECCCCCEEEEeeccc-cccceeeecccccccccceeeeEecccCCcce--eeeeccccccccc-cccccCceEecCEEE
Confidence 9999999988887532 22222234456777777888999999775442 1111 10001111 112222222377888
Q ss_pred EeCCCCcEEEEecCCcccccceeecCcc----------eEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC
Q 012007 341 CGSSDGLVNFWECEKHLSHGGVLRGHKM----------AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT 410 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 410 (473)
++..++.|..+|.+++...-........ ....+...+..++.++.++.+.-+|+.++ +.+.... .
T Consensus 127 ~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg---~~~w~~~--~ 201 (238)
T PF13360_consen 127 VGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATG---EKLWSKP--I 201 (238)
T ss_dssp EEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTT---EEEEEEC--S
T ss_pred EEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCC---CEEEEec--C
Confidence 8888999999999887654322221111 01223334447777887886444499884 3232222 2
Q ss_pred CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 411 GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 411 ~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
..+..+ ....+. .|+.++.|+.|..||+.+++..+
T Consensus 202 ~~~~~~-~~~~~~-------------~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 202 SGIYSL-PSVDGG-------------TLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp S-ECEC-EECCCT-------------EEEEEETTTEEEEEETTTTEEEE
T ss_pred CCccCC-ceeeCC-------------EEEEEeCCCEEEEEECCCCCEEe
Confidence 223332 234444 67777799999999999987544
No 288
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.85 E-value=3.2e-06 Score=75.22 Aligned_cols=199 Identities=11% Similarity=0.157 Sum_probs=134.0
Q ss_pred EEEEEecCCEEEEeeC-CCcEEEeeCCc-----cccccccCccc----------EEEEEEeCCCCEEEEEeC-CCeEEEE
Q 012007 126 IYSLAASGDLLYTGSD-SKNIRVWKNLK-----EFSGFKSNSGL----------VKAIIISGDSNKIFTGHQ-DGKIRIW 188 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~-dg~i~vwd~~~-----~~~~~~~h~~~----------V~~l~~s~~~~~l~s~~~-dg~i~vw 188 (473)
-.+++.+|++|+++.. -|.|.++.+.. .......|.+. +....+.|++++|+++.. --.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 3466777999999876 57899986532 12223334444 889999999999998754 2379999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCC
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDC 267 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~ 267 (473)
+++.+.......... .-...-..|.|+|++++.+... -+++|.+|.....
T Consensus 173 ~~~dg~L~~~~~~~v-----------------------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 173 DLDDGKLTPADPAEV-----------------------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EcccCcccccccccc-----------------------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 999776543332211 1344567799999999988876 4789999998763
Q ss_pred -eeeEEeec---------CCCceeEEEEcCCCEEEEEeCC--CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC
Q 012007 268 -KCLESINA---------HDDAINSVVAGFDSLVFTGSAD--GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE 335 (473)
Q Consensus 268 -~~~~~~~~---------~~~~v~~l~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 335 (473)
..+..++. ......+|.++++|.++-++.- ..|.+|.+...+ ....+......+......+.|++.
T Consensus 224 ~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~--g~L~~~~~~~teg~~PR~F~i~~~ 301 (346)
T COG2706 224 VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG--GKLELVGITPTEGQFPRDFNINPS 301 (346)
T ss_pred CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC--CEEEEEEEeccCCcCCccceeCCC
Confidence 22333321 2345667888999955555543 367777765332 334444455555566789999999
Q ss_pred CCEEEEeCCCC-cEEEEecCC
Q 012007 336 SAVVYCGSSDG-LVNFWECEK 355 (473)
Q Consensus 336 ~~~l~~~~~dg-~i~iwd~~~ 355 (473)
+++|+++..++ .|.+|....
T Consensus 302 g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 302 GRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCEEEEEccCCCcEEEEEEcC
Confidence 99999887754 688887653
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.84 E-value=5.1e-08 Score=87.27 Aligned_cols=159 Identities=13% Similarity=0.217 Sum_probs=107.7
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe-eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 164 VKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA-SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 164 V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
+..+..++.+++||.+..+....++++..... ........ -...-+.+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~------------------------------v~~~~~ai~ 114 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC------------------------------VPKRPTAIS 114 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee------------------------------cccCcceee
Confidence 34445677788888888887777777665442 11111100 122233444
Q ss_pred EcCCCCEEEEEe---CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 243 LNAEQGLLYSGS---WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 243 ~~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
|..+......+. ....+.+|....+.+ ..+-+|-..+..+++++|+ .|+++..|..|++-... .......
T Consensus 115 ~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-----a~f~Ies 188 (390)
T KOG3914|consen 115 FIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-----ATFVIES 188 (390)
T ss_pred eeeccceEEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecC-----cccchhh
Confidence 444444444444 444455555554443 3445799999999999998 89999999999998765 3444455
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 359 (473)
...+|..-|..++.-++. .|++++.|++|++||+.++..+
T Consensus 189 fclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 189 FCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcc
Confidence 677899999999998764 5899999999999999987665
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.83 E-value=9.7e-06 Score=72.63 Aligned_cols=210 Identities=15% Similarity=0.150 Sum_probs=128.6
Q ss_pred EEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE
Q 012007 165 KAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243 (473)
Q Consensus 165 ~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 243 (473)
.+++|.+ ++.++++--..+.|..|+..++..... .......+++
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~-----------------------------------~~~~~~G~~~ 47 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI-----------------------------------DLPGPNGMAF 47 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-----------------------------------ESSSEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE-----------------------------------ecCCCceEEE
Confidence 3678887 666666766789999999987754321 1122566777
Q ss_pred c-CCCCEEEEEeCCCCEEEEEcCCCeeeEEeec-----CCCceeEEEEcCCCEEEEEeCC---------CcEEEEeCccc
Q 012007 244 N-AEQGLLYSGSWDKTLKVWRISDCKCLESINA-----HDDAINSVVAGFDSLVFTGSAD---------GTVKVWRRELQ 308 (473)
Q Consensus 244 ~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-----~~~~v~~l~~~~~~~l~s~~~d---------g~i~vwd~~~~ 308 (473)
. ++ ..|+.+..+ .+.++|..+++....... .....+.+++.++|.|+.+... |.|..++..
T Consensus 48 ~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-- 123 (246)
T PF08450_consen 48 DRPD-GRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-- 123 (246)
T ss_dssp ECTT-SEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--
T ss_pred EccC-CEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--
Confidence 7 55 556666654 456669988865444332 3457888999999955554332 345555543
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEE-EeCCCCcEEEEecCCccc-c--ccee---ecCcceE--EEEEecCCE
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVY-CGSSDGLVNFWECEKHLS-H--GGVL---RGHKMAV--LCLAAAGNL 379 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~-~--~~~~---~~~~~~v--~~~~~~~~~ 379 (473)
. . .......-...+.|+|+|+++.|+ +-+..+.|..|++..... . ...+ ....... +++..+|++
T Consensus 124 ~---~---~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 124 G---K---VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp S---E---EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred C---e---EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 1 1 122222345578999999998765 567788899999863222 1 1111 1111112 555566888
Q ss_pred EEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe-cCCC
Q 012007 380 VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE-EDRD 423 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~ 423 (473)
.++....+.|.+++.+. +.+..+.-....+++++|. ++..
T Consensus 198 ~va~~~~~~I~~~~p~G----~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 198 WVADWGGGRIVVFDPDG----KLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEEEETTTEEEEEETTS----CEEEEEE-SSSSEEEEEEESTTSS
T ss_pred EEEEcCCCEEEEECCCc----cEEEEEcCCCCCEEEEEEECCCCC
Confidence 88887889999999874 3444444334579999995 4433
No 291
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.1e-06 Score=81.91 Aligned_cols=234 Identities=12% Similarity=0.097 Sum_probs=141.1
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE
Q 012007 164 VKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243 (473)
Q Consensus 164 V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 243 (473)
=+-+.|||-|.||+|-..-| |.+|--.+-.....+. | ..|.-+.|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~---------------------------------H-p~Vq~idf 257 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY---------------------------------H-PGVQFIDF 257 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc---------------------------------C-CCceeeec
Confidence 46789999999999998887 7899654443322221 4 35788999
Q ss_pred cCCCCEEEEEeC-----------CCCEEEEEcCCCeeeEEeec--CCCceeE-EEEcCCCEEEEEeCCCcEEEEeCcccC
Q 012007 244 NAEQGLLYSGSW-----------DKTLKVWRISDCKCLESINA--HDDAINS-VVAGFDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 244 ~~~~~~l~s~s~-----------dg~v~vwd~~~~~~~~~~~~--~~~~v~~-l~~~~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
+|..+||++=+. ...++|||+.+|...+.+.. ....++- ..|+.++..++.-....|.||+....
T Consensus 258 SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf- 336 (698)
T KOG2314|consen 258 SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSF- 336 (698)
T ss_pred CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCce-
Confidence 999999998652 25699999999999988876 3333443 46888885555555578888876421
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC--------------------------------------------
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-------------------------------------------- 345 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-------------------------------------------- 345 (473)
.+.....-.-..|....|+|.+.+||--...
T Consensus 337 -----~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 337 -----MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred -----eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEE
Confidence 1111111112334445555554444322110
Q ss_pred -------------CcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeC---CCcEEEEecC-CCCceeEEEEe
Q 012007 346 -------------GLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSA---DRNICLWRRE-ESGAHSCLAVL 406 (473)
Q Consensus 346 -------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~---dg~i~iwd~~-~~~~~~~~~~~ 406 (473)
..+.|+.++....+.... .-...+..+++ .|+.+++-+. ..++.+|.++ +.....++..+
T Consensus 412 vdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~ 490 (698)
T KOG2314|consen 412 VDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL 490 (698)
T ss_pred EEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh
Confidence 012222222211111111 12234455554 4666655432 3578999888 44445556555
Q ss_pred cCCCCceeEEEEecCCCCCcccccCCCccEEEEEe---eCCCcEEEEEcCC
Q 012007 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG---SLDKSVKVWRVSE 454 (473)
Q Consensus 407 ~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~---s~Dg~v~iW~i~~ 454 (473)
.. ...+.+.|+|.|+ +++.+ |..|.+.++|+.-
T Consensus 491 dk--~~~N~vfwsPkG~-------------fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 491 DK--KFANTVFWSPKGR-------------FVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred cc--cccceEEEcCCCc-------------EEEEEEecccccceEEEecch
Confidence 54 4578999999998 45443 4578899999874
No 292
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=3.8e-07 Score=88.30 Aligned_cols=231 Identities=11% Similarity=0.064 Sum_probs=153.1
Q ss_pred CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCC------------CEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDS------------NKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~------------~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
+.++|-|+. ..|.|-|.. +.+..+..|...|+.+.|.|.. -+||++...|.|.+||.........
T Consensus 26 ~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~ 104 (1062)
T KOG1912|consen 26 SGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW 104 (1062)
T ss_pred cceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh
Confidence 446666665 477788854 6788888999999999998731 2577788889999999987654333
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC---CC-CEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA---EQ-GLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
.. .|.+.+..++|-+ +. ..|++-....+|.+|+..+|+.+....
T Consensus 105 l~--------------------------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 105 LS--------------------------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred hc--------------------------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 22 2778888899876 33 466666667899999999999998887
Q ss_pred cCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCC-CcceeeeeeeccCCc------------c-------------
Q 012007 275 AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK-GTKHCLAQVLLKHEN------------A------------- 326 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~------------~------------- 326 (473)
.......|+.+.|-. .+..-+..|.+.+.+.-...+ .......+....|.. .
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity 232 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY 232 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence 777778888877654 444555566666665432111 111111222222211 0
Q ss_pred EEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce-eecCcceEEEEEec--CCEEEEEeCCCcEEEEecCC
Q 012007 327 VTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV-LRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 327 v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~ 396 (473)
...++|+|.-+.++.......+.++|++-......+ +.........+-|+ ...|++...||.+.+|-.+.
T Consensus 233 ~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 233 CAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred HHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 123567887665555666778999998754333222 22233455666666 56899999999999998764
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.82 E-value=4.1e-07 Score=77.23 Aligned_cols=189 Identities=11% Similarity=-0.001 Sum_probs=130.7
Q ss_pred EEEEeeCCCcEEEeeCCccccccccCccc--EEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE-eeccccccceeE
Q 012007 135 LLYTGSDSKNIRVWKNLKEFSGFKSNSGL--VKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK-RVGSLPTFKDYV 211 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~~~~~~~~h~~~--V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~ 211 (473)
-+..++.|.++++.++......+..|... +..+++++|++++++.+....|..|.+.....-... ...
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a--------- 200 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA--------- 200 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec---------
Confidence 46677888899998877555555556554 889999999999999999999999998765432222 111
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE-----EeecCCCceeEEEEc
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE-----SINAHDDAINSVVAG 286 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----~~~~~~~~v~~l~~~ 286 (473)
...+.-.+..|+.....+|++..||++.|||++...... +-..|.+++..+.|+
T Consensus 201 ---------------------~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fs 259 (344)
T KOG4532|consen 201 ---------------------PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFS 259 (344)
T ss_pred ---------------------ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEec
Confidence 144555688899999999999999999999998754332 224588999999999
Q ss_pred CCC---EEEEEeCCCcEEEEeCcccCCCccee-eeeeeccCCcc-EEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 287 FDS---LVFTGSADGTVKVWRRELQGKGTKHC-LAQVLLKHENA-VTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 287 ~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~-v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
+.| +|+..-.-+.+.+.|++....-.... .......|... |..-.|+.++.-+.+...+ .+.-|++.
T Consensus 260 l~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 260 LYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred CCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeecc
Confidence 876 67777778899999998643211110 01122334433 7777787777666555443 34445443
No 294
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.81 E-value=2.8e-06 Score=78.66 Aligned_cols=244 Identities=18% Similarity=0.180 Sum_probs=156.4
Q ss_pred cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
+....-++..++|||.|.+|++....| |.+|.-.......... | .
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~---------------------------------~-~ 72 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR---------------------------------H-P 72 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee---------------------------------c-C
Confidence 333567899999999999999987764 8899887765333332 3 4
Q ss_pred CeeEEEEcCCCCEEEEEeCC---------------CCEEEEEcCCCeeeEEeecCCCc--ee-EEEEcCCCEEEEEeCCC
Q 012007 237 AVSCLSLNAEQGLLYSGSWD---------------KTLKVWRISDCKCLESINAHDDA--IN-SVVAGFDSLVFTGSADG 298 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~d---------------g~v~vwd~~~~~~~~~~~~~~~~--v~-~l~~~~~~~l~s~~~dg 298 (473)
.|..+.|+|.+++|.+=+.. ..+.+||+.++..+..+.....+ .+ -+.|+-+..+++--...
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~ 152 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS 152 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC
Confidence 58889999999999886543 34999999999999998866555 44 56677666333222456
Q ss_pred cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC--CEEEE-----eCCCCcEEEEecCCccccc-ceeecCcceE
Q 012007 299 TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES--AVVYC-----GSSDGLVNFWECEKHLSHG-GVLRGHKMAV 370 (473)
Q Consensus 299 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v 370 (473)
.+.|+++. ... . ......+. ...|....|+|.+ ..|+. ...++.+++|.+....... ..+..-...-
T Consensus 153 sl~i~e~t-~n~-~-~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 153 SLYIHEIT-DNI-E-EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred eEEEEecC-Ccc-c-cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 78999862 111 1 11111111 3568888999864 34443 4567889999887433221 1121122222
Q ss_pred EEEEecCCEEEEEe-----------CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEE
Q 012007 371 LCLAAAGNLVFSGS-----------ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439 (473)
Q Consensus 371 ~~~~~~~~~l~s~~-----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~ 439 (473)
+.+...|++|+.-- ....++|+++.. .-+.....-.++|...+|.|.+.. +.++
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e----~~i~V~~~~~~pVhdf~W~p~S~~-----------F~vi 292 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE----RSIPVEKDLKDPVHDFTWEPLSSR-----------FAVI 292 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecc----cccceeccccccceeeeecccCCc-----------eeEE
Confidence 34444566655321 134678888874 222233356789999999999873 3566
Q ss_pred EeeCCCcEEEEEcCCC
Q 012007 440 SGSLDKSVKVWRVSEH 455 (473)
Q Consensus 440 s~s~Dg~v~iW~i~~~ 455 (473)
+|-.+-.+.++++...
T Consensus 293 ~g~~pa~~s~~~lr~N 308 (561)
T COG5354 293 SGYMPASVSVFDLRGN 308 (561)
T ss_pred ecccccceeecccccc
Confidence 6667888888888754
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.81 E-value=5.6e-06 Score=71.54 Aligned_cols=225 Identities=17% Similarity=0.157 Sum_probs=120.8
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCccc-------cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEe
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKEF-------SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKR 200 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~~-------~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 200 (473)
.++.+|++||.-- |..|.|-...... ...+...-.=..++|+||+.+||.+...|+|+++|+.....-....
T Consensus 4 ~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 4 ALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred eecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence 4556677777654 4566666433222 2223333456889999999999999999999999998654322211
Q ss_pred eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC------CCEEEEEeCCCCEEEEEcCC-----Cee
Q 012007 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE------QGLLYSGSWDKTLKVWRISD-----CKC 269 (473)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~------~~~l~s~s~dg~v~vwd~~~-----~~~ 269 (473)
....+. .-..+|..|.|.+. ...|++-..+|.++-|-+.. .+.
T Consensus 83 ~~~~~~--------------------------d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e 136 (282)
T PF15492_consen 83 AMSFPG--------------------------DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQE 136 (282)
T ss_pred ccccCC--------------------------ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCccee
Confidence 110000 13345666666542 22566777788888777532 233
Q ss_pred eEEeec---CCCceeEEEEcCCC-EEEEEeC-CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE--EEEe
Q 012007 270 LESINA---HDDAINSVVAGFDS-LVFTGSA-DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV--VYCG 342 (473)
Q Consensus 270 ~~~~~~---~~~~v~~l~~~~~~-~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--l~~~ 342 (473)
.+++.. +...|.++.++|.. +|++|+. ...-..+ ......+++-..-.+..+ .+..
T Consensus 137 ~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s-----------------~a~~~GLtaWRiL~~~Pyyk~v~~ 199 (282)
T PF15492_consen 137 NHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMS-----------------KASSCGLTAWRILSDSPYYKQVTS 199 (282)
T ss_pred eEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccc-----------------cccccCceEEEEcCCCCcEEEccc
Confidence 444432 46689999999986 4444443 3210000 011112222222111111 0111
Q ss_pred CCCCc------EEEEecCCccccc-ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 343 SSDGL------VNFWECEKHLSHG-GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 343 ~~dg~------i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
..|+. -.+|.+-+..... ..........++++|||.+||+...+|.|.+|++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 200 SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 11111 1122211100000 011122334578899999999999999999999987
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.81 E-value=4.1e-06 Score=80.71 Aligned_cols=261 Identities=10% Similarity=0.051 Sum_probs=145.6
Q ss_pred cCCEEEEeeCCCcEEEeeCCc--cccccccCcccEEE-EEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 132 SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKA-IIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~~V~~-l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
++..++.++.+|.+..+|... .+-..... +.+.+ .... +..++.+..+|.|..+|..+++..-....... ..
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~- 193 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVP-SL- 193 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCC-cc-
Confidence 455677777888888888542 22222221 12221 1222 33677778889999999998886554432210 00
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCC-------cee
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD-------AIN 281 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-------~v~ 281 (473)
...+...++ . .+..++.++.++.+..+|..+|+.+........ ...
T Consensus 194 ---------------------~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~ 246 (394)
T PRK11138 194 ---------------------TLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLV 246 (394)
T ss_pred ---------------------cccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhccc
Confidence 000001111 1 124567777889999999999887665432110 001
Q ss_pred EEEEc---CCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc
Q 012007 282 SVVAG---FDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS 358 (473)
Q Consensus 282 ~l~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 358 (473)
.+... .++.++.++.+|.+..+|...++. .... .. . ....+.. .+..|+.++.+|.+..+|..++..
T Consensus 247 ~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~--~W~~--~~-~---~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 247 DVDTTPVVVGGVVYALAYNGNLVALDLRSGQI--VWKR--EY-G---SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred ccCCCcEEECCEEEEEEcCCeEEEEECCCCCE--EEee--cC-C---CccCcEE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence 11111 256788888899999999875432 1110 01 1 1111222 456777888899999999987654
Q ss_pred ccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeE-EEEecCCCCCcccccCCCccEE
Q 012007 359 HGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKC-LAVEEDRDHDHEYHQKGDQRWT 437 (473)
Q Consensus 359 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~~~~~~~~~~~~~ 437 (473)
.-................+.+|+.++.||.|.+.|..++ +.+....-....+.+ ..+. ++ .
T Consensus 317 ~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG---~~~~~~~~~~~~~~s~P~~~-~~--------------~ 378 (394)
T PRK11138 317 LWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDG---RFVAQQKVDSSGFLSEPVVA-DD--------------K 378 (394)
T ss_pred EEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCC---CEEEEEEcCCCcceeCCEEE-CC--------------E
Confidence 321111001111122234778889999999999999884 444444322222322 2222 22 5
Q ss_pred EEEeeCCCcEEEEEc
Q 012007 438 VYSGSLDKSVKVWRV 452 (473)
Q Consensus 438 l~s~s~Dg~v~iW~i 452 (473)
|+.++.||.|..++.
T Consensus 379 l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 379 LLIQARDGTVYAITR 393 (394)
T ss_pred EEEEeCCceEEEEeC
Confidence 888899999988875
No 297
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.80 E-value=5.7e-06 Score=75.96 Aligned_cols=211 Identities=10% Similarity=0.072 Sum_probs=135.9
Q ss_pred eCCCcEEEeeCCccccccccCcc--cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccc---c--------
Q 012007 140 SDSKNIRVWKNLKEFSGFKSNSG--LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP---T-------- 206 (473)
Q Consensus 140 ~~dg~i~vwd~~~~~~~~~~h~~--~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~---~-------- 206 (473)
.-||.=.+|.+.-.-..++.|+. .-.+=..+.||+.++- +..|.|.++|.++........-.... .
T Consensus 243 D~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~ps 321 (668)
T COG4946 243 DHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPS 321 (668)
T ss_pred cccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHH
Confidence 34555555543322223333443 1223334568877765 45678999998877654322210111 0
Q ss_pred ---------cceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC-CEEEEEcCCCeeeEEeecC
Q 012007 207 ---------FKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK-TLKVWRISDCKCLESINAH 276 (473)
Q Consensus 207 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~ 276 (473)
..+++......+.++........+.++|...|.-..+.-+++-++.|..|| .+-|+|..+++. ..+...
T Consensus 322 kyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~ 400 (668)
T COG4946 322 KYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKD 400 (668)
T ss_pred HhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCC
Confidence 011112222222222223333455667888899888888888999999999 899999987764 445556
Q ss_pred CCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC----cEEEE
Q 012007 277 DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG----LVNFW 351 (473)
Q Consensus 277 ~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~iw 351 (473)
-+.|.++..+++| .++++.....|.+.|++++. ....-....+-|+.+.|+|+++++|-+--+| .|+++
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngn------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikly 474 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLY 474 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEE
Confidence 7889999999998 67788888889999987543 1222334456799999999999999887776 48899
Q ss_pred ecCCccc
Q 012007 352 ECEKHLS 358 (473)
Q Consensus 352 d~~~~~~ 358 (473)
|+..++.
T Consensus 475 dm~~~Ki 481 (668)
T COG4946 475 DMDGGKI 481 (668)
T ss_pred ecCCCeE
Confidence 9887543
No 298
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.79 E-value=2.8e-06 Score=81.47 Aligned_cols=231 Identities=13% Similarity=0.078 Sum_probs=136.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
+..++.++.+|.|..+|..+++.......... .. .... .++..+++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~-----------------------------~~---~~p~--v~~~~v~v 110 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDER-----------------------------LS---GGVG--ADGGLVFV 110 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCC-----------------------------cc---cceE--EcCCEEEE
Confidence 55888889999999999988876554443210 00 1111 24678888
Q ss_pred EeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEE
Q 012007 253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV 332 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 332 (473)
++.++.|..+|..+|+.+....... .+.+.....++.++.++.+|.|..||.+.++..-.............. .....
T Consensus 111 ~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~-~sp~~ 188 (377)
T TIGR03300 111 GTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS-ASPVI 188 (377)
T ss_pred EcCCCEEEEEECCCCcEeeeeccCc-eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC-CCCEE
Confidence 9999999999999999887765433 222211123567888888999999998754321110000000000000 01111
Q ss_pred ccCCCEEEEeCCCCcEEEEecCCcccccceeecCcc---------eE-EEEEecCCEEEEEeCCCcEEEEecCCCCceeE
Q 012007 333 NQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM---------AV-LCLAAAGNLVFSGSADRNICLWRREESGAHSC 402 (473)
Q Consensus 333 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 402 (473)
. +..++.+..+|.+..+|.+++...-........ .+ ......+..+++++.+|.+..||..++ +.
T Consensus 189 ~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG---~~ 263 (377)
T TIGR03300 189 A--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG---RV 263 (377)
T ss_pred E--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC---cE
Confidence 1 246778888899999998876543211110000 00 111224678888889999999999874 33
Q ss_pred EEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 403 LAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 403 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
+..... ........ .+. .++.++.||.|..+|..+++..++.
T Consensus 264 ~W~~~~--~~~~~p~~--~~~-------------~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 264 LWKRDA--SSYQGPAV--DDN-------------RLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred EEeecc--CCccCceE--eCC-------------EEEEECCCCeEEEEECCCCcEEEcc
Confidence 333221 11122222 222 5777788999999999888765543
No 299
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=2.4e-08 Score=87.43 Aligned_cols=147 Identities=16% Similarity=0.255 Sum_probs=111.4
Q ss_pred CCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
|-- ++.+.+-.|-+-|+..........++.|.++.|...+++++.|+.+|.|.+.|+..+..-.
T Consensus 225 gyh-fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~--------------- 288 (425)
T KOG2695|consen 225 GYH-FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN--------------- 288 (425)
T ss_pred eee-ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC---------------
Confidence 434 4444456777778776665555577889999999989999999999999999998663211
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCee---eEEeecCCCceeEEEE--c
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC---LESINAHDDAINSVVA--G 286 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~---~~~~~~~~~~v~~l~~--~ 286 (473)
......+-|.+.|+++..-. ++.+|++.+.+|+|++||++.-++ +..+.+|...-.-+-+ .
T Consensus 289 -------------~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~ 355 (425)
T KOG2695|consen 289 -------------GWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK 355 (425)
T ss_pred -------------CcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc
Confidence 11223334999999998877 788999999999999999988777 8888888654433332 2
Q ss_pred C-CCEEEEEeCCCcEEEEeCccc
Q 012007 287 F-DSLVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 287 ~-~~~l~s~~~dg~i~vwd~~~~ 308 (473)
+ ++.+++++.|...+||.++.+
T Consensus 356 ~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 356 EEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred cccceEEEccCeeEEEEEecccC
Confidence 3 358999999999999999743
No 300
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=7e-06 Score=78.98 Aligned_cols=190 Identities=6% Similarity=-0.033 Sum_probs=111.4
Q ss_pred cEEEEEEeCCCCE-EEEEeCC---CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 163 LVKAIIISGDSNK-IFTGHQD---GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 163 ~V~~l~~s~~~~~-l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
.+..-.|+|||+. ++..+.+ ..|.++|+.+++...... ..+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---------------------------------~~g~~ 235 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---------------------------------SQGML 235 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---------------------------------CCCcE
Confidence 6788999999985 5544433 468889988775433221 23345
Q ss_pred eEEEEcCCCCEEEEE-eCC--CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCC--cEEEEeCcccCCC
Q 012007 239 SCLSLNAEQGLLYSG-SWD--KTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADG--TVKVWRRELQGKG 311 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~-s~d--g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg--~i~vwd~~~~~~~ 311 (473)
....|+|||+.|+.. +.+ ..|.++|+.+++.. .+..+........|+|++ ++++....+ .|.+.|+..+.
T Consensus 236 ~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-- 312 (419)
T PRK04043 236 VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-- 312 (419)
T ss_pred EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC--
Confidence 567799999876654 333 46888888777643 343333333455799998 344444445 45556664321
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCC---------CcEEEEecCCcccccceeecCcceEEEEEecCCEEEE
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD---------GLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFS 382 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 382 (473)
...+ ...+. ....|+|+|+.|+..... ..|.+.|+.++... ....+.......++|||++|+.
T Consensus 313 -~~rl--t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 313 -VEQV--VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMF 384 (419)
T ss_pred -eEeC--ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEE
Confidence 1111 11111 124899999988766543 26788888765332 1211222334678999997776
Q ss_pred EeCC-C--cEEEEecCC
Q 012007 383 GSAD-R--NICLWRREE 396 (473)
Q Consensus 383 ~~~d-g--~i~iwd~~~ 396 (473)
...+ + .+.+.++..
T Consensus 385 ~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 385 IKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEccCCcEEEEEEecCC
Confidence 6543 2 355556554
No 301
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=2.6e-06 Score=83.74 Aligned_cols=223 Identities=13% Similarity=0.177 Sum_probs=144.9
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCC-ccccccccCccc-EEEEEEeCCCCEEEEEeCCCe-----EEEEeCCCCCeee
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGL-VKAIIISGDSNKIFTGHQDGK-----IRIWKVSRKNASV 197 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~-V~~l~~s~~~~~l~s~~~dg~-----i~vwd~~~~~~~~ 197 (473)
.|.|++.++..+|.|+.+|.|.+.+.. +.+..++.+... |..+....+..+|++.+.|+. |+||+++..+...
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 788999999999999999999998865 444788888777 555555555578998887754 8999997653111
Q ss_pred E-EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC----CCeeeEE
Q 012007 198 H-KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS----DCKCLES 272 (473)
Q Consensus 198 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~----~~~~~~~ 272 (473)
. .... ..+......-....++.+++.+.+-+.+|+|-.+|.|..+.-. .+.....
T Consensus 107 sP~c~~--------------------~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 107 SPQCLY--------------------EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred Ccceee--------------------eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee
Confidence 0 0000 0000000000145678999999999999999999999998531 1222222
Q ss_pred eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 273 INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 273 ~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
......+|+.+.+..++ .++-...-..|.+|.+.. ..........|...+.|..+++....+++++. ..+.+|
T Consensus 167 ~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-----r~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY 240 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-----RTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFY 240 (933)
T ss_pred eccCCCCceeeEEecCCceeEEEEecceeEEEEecC-----CCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEE
Confidence 22356799999998777 323333456789998861 11334557788889999999987664555543 469999
Q ss_pred ecCCcccccceeecCcceEEEE
Q 012007 352 ECEKHLSHGGVLRGHKMAVLCL 373 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v~~~ 373 (473)
|............+|.....++
T Consensus 241 ~sd~~~~cfaf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 241 DSDGRGPCFAFEVGEKKEMLVF 262 (933)
T ss_pred cCCCcceeeeecCCCeEEEEEE
Confidence 9875433322222555444433
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=3.9e-08 Score=86.18 Aligned_cols=150 Identities=14% Similarity=0.159 Sum_probs=110.0
Q ss_pred CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc---cccceeec
Q 012007 289 SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL---SHGGVLRG 365 (473)
Q Consensus 289 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~ 365 (473)
++-++.+.+-.|-+-|++++- .......+.|.++.|...+++++.|+.+|.|..+|++... .......-
T Consensus 225 gyhfs~G~sqqv~L~nvetg~--------~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly 296 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGH--------QQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY 296 (425)
T ss_pred eeeecccccceeEEEEeeccc--------ccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE
Confidence 344777778888888887542 1122356789999999989999999999999999998641 11123335
Q ss_pred CcceEEEEE---ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 366 HKMAVLCLA---AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 366 ~~~~v~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
|...++++. +++++|++.+.+|+|++||.+..+...-+..+.||...-.-+-++-+.+. -.++++|
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-----------g~I~s~G 365 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-----------GSIFSVG 365 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-----------ceEEEcc
Confidence 777887764 67999999999999999999974444458889999654444444333221 0788899
Q ss_pred CCCcEEEEEcCCCCC
Q 012007 443 LDKSVKVWRVSEHAP 457 (473)
Q Consensus 443 ~Dg~v~iW~i~~~~~ 457 (473)
.|...+||.+..+..
T Consensus 366 dDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 366 DDCYTRIWSLDSGHL 380 (425)
T ss_pred CeeEEEEEecccCce
Confidence 999999999997653
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.73 E-value=5.2e-08 Score=59.22 Aligned_cols=38 Identities=29% Similarity=0.669 Sum_probs=36.1
Q ss_pred eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 401 SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 401 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+++..+.+|.+.|++|+|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-------------~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-------------FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-------------EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-------------cceeeCCCCEEEEEC
Confidence 67889999999999999999988 899999999999997
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.71 E-value=4.2e-05 Score=68.54 Aligned_cols=210 Identities=10% Similarity=0.043 Sum_probs=127.1
Q ss_pred cCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEe-CCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccccee
Q 012007 132 SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIIS-GDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDY 210 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (473)
++.++++--..+.|..|+............+ ...+++. +++ .|+.+..++ +.++|..+++...........
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~----- 82 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGG----- 82 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTC-----
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCC-----
Confidence 4667777777889999987654443322223 6777777 565 555556554 555698887654433321000
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC--------CCEEEEEcCCCeeeEEeecCCCceeE
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD--------KTLKVWRISDCKCLESINAHDDAINS 282 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d--------g~v~vwd~~~~~~~~~~~~~~~~v~~ 282 (473)
......+.+++.++|++.++.... |.|..++.. ++..... ..-...+.
T Consensus 83 ----------------------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNG 138 (246)
T PF08450_consen 83 ----------------------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNG 138 (246)
T ss_dssp ----------------------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEE
T ss_pred ----------------------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccc
Confidence 023457889999999976665543 457777766 4543333 33556789
Q ss_pred EEEcCCC--EEEEEeCCCcEEEEeCcccCC-CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc
Q 012007 283 VVAGFDS--LVFTGSADGTVKVWRRELQGK-GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 283 l~~~~~~--~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 359 (473)
|+|++++ ++++-+..+.|..+++..... .........+.......-.+++..+|++.++....+.|.++|.+. ...
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G-~~~ 217 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG-KLL 217 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS-CEE
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc-cEE
Confidence 9999998 445667788888888864332 111122222223334578899999999888887889999999883 333
Q ss_pred cceeecCcceEEEEEe
Q 012007 360 GGVLRGHKMAVLCLAA 375 (473)
Q Consensus 360 ~~~~~~~~~~v~~~~~ 375 (473)
...... ...++++++
T Consensus 218 ~~i~~p-~~~~t~~~f 232 (246)
T PF08450_consen 218 REIELP-VPRPTNCAF 232 (246)
T ss_dssp EEEE-S-SSSEEEEEE
T ss_pred EEEcCC-CCCEEEEEE
Confidence 323323 225555555
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.70 E-value=1e-05 Score=77.89 Aligned_cols=232 Identities=12% Similarity=0.076 Sum_probs=133.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
+..++.++.+|.+..+|.++++..-........ ...++ . .+..++.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~----------------------------~ssP~----v--~~~~v~v 165 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA----------------------------LSRPV----V--SDGLVLV 165 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCce----------------------------ecCCE----E--ECCEEEE
Confidence 447788889999999999998865544321100 11111 1 2456777
Q ss_pred EeCCCCEEEEEcCCCeeeEEeecCCCce-----eEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCC-cc
Q 012007 253 GSWDKTLKVWRISDCKCLESINAHDDAI-----NSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHE-NA 326 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~~~~~~v-----~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~ 326 (473)
+..++.|..+|.++|+.+.........+ ..-.. .++.++.++.+|.+..+|...+...-..........+. ..
T Consensus 166 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 166 HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhc
Confidence 8889999999999999988776431111 01111 13467778889999888877543211100000000000 00
Q ss_pred EEEEEEcc--CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEE
Q 012007 327 VTALAVNQ--ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLA 404 (473)
Q Consensus 327 v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 404 (473)
...+..+| .+..+++++.+|.+..+|..++...-....+ ....+...+..|+.++.+|.+..+|..++ +.+.
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~~~~~~vy~~~~~g~l~ald~~tG---~~~W 318 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG---SVNDFAVDGGRIYLVDQNDRVYALDTRGG---VELW 318 (394)
T ss_pred ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC---CccCcEEECCEEEEEcCCCeEEEEECCCC---cEEE
Confidence 01111122 2456777778899999999876543221111 11223456788888889999999999874 2222
Q ss_pred EecCC-CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 405 VLTGH-TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 405 ~~~~h-~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
....- .....+..+. ++ .|+.++.||.|.+.|..+++...+
T Consensus 319 ~~~~~~~~~~~sp~v~-~g--------------~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 319 SQSDLLHRLLTAPVLY-NG--------------YLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred cccccCCCcccCCEEE-CC--------------EEEEEeCCCEEEEEECCCCCEEEE
Confidence 21110 1112222222 22 678888999999999888765443
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.69 E-value=3.4e-06 Score=85.99 Aligned_cols=240 Identities=14% Similarity=0.134 Sum_probs=148.3
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
..|.++.|..+++-++.+..+|.|.+-|.++........ -...|.++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---------------------------------vd~GI~aa 115 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---------------------------------VDNGISAA 115 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---------------------------------ccCceEEE
Confidence 689999999999999999999999999877765433222 56789999
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecC-----CCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH-----DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-----~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
+|+||+..++..+.++++.+-+ .+..++.....+ .+....+-|.....-+-|+. |.....+... ....
T Consensus 116 swS~Dee~l~liT~~~tll~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~-----~ek~ 188 (1265)
T KOG1920|consen 116 SWSPDEELLALITGRQTLLFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIE-----KEKA 188 (1265)
T ss_pred eecCCCcEEEEEeCCcEEEEEe-ccccchhccccccccccccccceecccccceeeecch-hhhccccccc-----cccc
Confidence 9999999999999877776654 333433322211 11222223322222222221 1111111110 0000
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEe-----CCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEe---CCCc
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCG-----SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGS---ADRN 388 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~---~dg~ 388 (473)
.......+.=+.|.|--||.++++. .....|++||.+.................++.|.|.++++-. .|+.
T Consensus 189 -~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 189 -LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred -ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCc
Confidence 0000112233568999999999883 333789999987433333333344456677888899988854 4668
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEE---eeCCCcEEEEEcCCC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYS---GSLDKSVKVWRVSEH 455 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s---~s~Dg~v~iW~i~~~ 455 (473)
|.+|..+.-........+......|..++|+.++. +|+. ......|++|-+.+.
T Consensus 268 IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd-------------iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 268 IVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD-------------ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred EEEEecCCccccccccCCcccccchheeeecCCCC-------------ceeeeecccccceEEEEEecCe
Confidence 99999876433333333444445599999999988 6666 444445999998763
No 307
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=1.8e-05 Score=76.16 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=104.5
Q ss_pred CeeEEEEcCCCCE-EEEEeCC---CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCC--CcEEEEeCccc
Q 012007 237 AVSCLSLNAEQGL-LYSGSWD---KTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSAD--GTVKVWRRELQ 308 (473)
Q Consensus 237 ~v~~l~~~~~~~~-l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~d--g~i~vwd~~~~ 308 (473)
.+..-.|+|+|+. ++..+.+ ..|.++|+.+++...... ..+......|+|++ ++++.+.+ ..|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5667899999984 6544433 469999998886654433 44556667899998 44444444 45666676432
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CC--cEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeC
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DG--LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
. ...+..+........|+|||+.|+..+. .+ .|.++|+.++........+.. ...++++|++|+....
T Consensus 268 ~-------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 268 T-------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred c-------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEc
Confidence 1 1122222322345689999987766543 33 577778876543222222222 2478999998877664
Q ss_pred C---------CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCC
Q 012007 386 D---------RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDH 424 (473)
Q Consensus 386 d---------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 424 (473)
. ..|.+.|+.++.. ..+... .......|+||++.
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~ 381 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGS 381 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCE
Confidence 3 2678888877432 223222 22345889999983
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.1e-06 Score=85.66 Aligned_cols=188 Identities=13% Similarity=0.073 Sum_probs=126.1
Q ss_pred cccEEEEEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 123 EGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 123 ~~~V~~~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
...+.|.+..+++|+-|+-+|.|++.+..........|+.. ..+|.++++|+.||+|.|-.+.+.+......
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-- 110 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-- 110 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe--
Confidence 34566788889999999999999999876555555556554 5689999999999999999988776544333
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-----CCEEEEEeCCCCEEEEEcCC--CeeeEEeec
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-----QGLLYSGSWDKTLKVWRISD--CKCLESINA 275 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~s~s~dg~v~vwd~~~--~~~~~~~~~ 275 (473)
...++.+++++|+ .+.+++|+.-| +.++.-+= .+.-..+..
T Consensus 111 -------------------------------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 111 -------------------------------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred -------------------------------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 5578999999997 56899999888 77765321 111114556
Q ss_pred CCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 276 HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 276 ~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
..++|.++.|. |.+++-..|--|++||+....................--..+.|.++.++ +.|- ..+|+|..++
T Consensus 159 ~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 159 GEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VIGW-GDSVKICSIK 233 (846)
T ss_pred CccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EEec-CCeEEEEEEe
Confidence 67899999995 33444445556899998743321111111111111122345778776554 4443 3468888877
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=1.3e-06 Score=85.10 Aligned_cols=184 Identities=12% Similarity=0.137 Sum_probs=129.0
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
...+.|++++ +++|+-|..+|.|++.+..... ...+ .|...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~---------------------------------~~s~~--- 79 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNF---------------------------------DHSSS--- 79 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-cccc---------------------------------ccccc---
Confidence 4567788875 4599999999999999876442 1101 13332
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC------CEEEEEeCCCcEEEEeCcccCCCcce
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD------SLVFTGSADGTVKVWRRELQGKGTKH 314 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~------~~l~s~~~dg~i~vwd~~~~~~~~~~ 314 (473)
..+|.++++|+.||+|.|-.+-+.+....+. ...++.+++++|+ +.+++|+.-| +.++..+.-+...
T Consensus 80 ---~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~-- 152 (846)
T KOG2066|consen 80 ---ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD-- 152 (846)
T ss_pred ---ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc--
Confidence 5689999999999999999998888777665 4468999999998 3899999999 8888765433211
Q ss_pred eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE-----EEEEec-CCEEEEEeCCCc
Q 012007 315 CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV-----LCLAAA-GNLVFSGSADRN 388 (473)
Q Consensus 315 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~-~~~l~s~~~dg~ 388 (473)
...+....++|.++.|. |+++|-++.+| |++||+........+...+...- ..+.|. ...|+.|= ..+
T Consensus 153 --~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW-~d~ 226 (846)
T KOG2066|consen 153 --SVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGW-GDS 226 (846)
T ss_pred --ceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEec-CCe
Confidence 11456678899999996 67888887766 99999987655544444442221 234444 44555554 447
Q ss_pred EEEEecCC
Q 012007 389 ICLWRREE 396 (473)
Q Consensus 389 i~iwd~~~ 396 (473)
|+|..++.
T Consensus 227 v~i~~I~~ 234 (846)
T KOG2066|consen 227 VKICSIKK 234 (846)
T ss_pred EEEEEEec
Confidence 88888873
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.66 E-value=5.8e-08 Score=58.98 Aligned_cols=37 Identities=32% Similarity=0.601 Sum_probs=33.6
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.+..+.+|.+.|++|+|+|++++|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567889999999999999999999999999999997
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.61 E-value=3.4e-05 Score=68.75 Aligned_cols=183 Identities=14% Similarity=0.133 Sum_probs=112.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
++.++++++.++.|..||..+++.......... .... . ...+..++
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-----------------------------~~~~---~--~~~~~~v~ 80 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-----------------------------ISGA---P--VVDGGRVY 80 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-----------------------------GGSG---E--EEETTEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-----------------------------ccce---e--eecccccc
Confidence 455888889999999999999987665554211 0111 1 12456677
Q ss_pred EEeCCCCEEEEEcCCCeeeEEe-ecCCC-----ceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCC-
Q 012007 252 SGSWDKTLKVWRISDCKCLESI-NAHDD-----AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHE- 324 (473)
Q Consensus 252 s~s~dg~v~vwd~~~~~~~~~~-~~~~~-----~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~- 324 (473)
+++.++.|+.+|..+|+.+... ..... ......+. ++.++++..++.|..+|++++... .. .......
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~--w~--~~~~~~~~ 155 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLL--WK--YPVGEPRG 155 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEE--EE--EESSTT-S
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEE--EE--eecCCCCC
Confidence 7778889999999999998884 33211 11222222 557888888999999998754321 11 1111101
Q ss_pred -c------cEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE-EEecCCEEEEEeCCCcEEEEecCC
Q 012007 325 -N------AVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC-LAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 325 -~------~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
. .+..-....++ .++.+..++.+..+|+.++...- ... ...... ...++..|++++.++.|..||+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EEC--SS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-Eec--CCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 1 11222222244 77777777764444998876442 221 222333 567788888888999999999998
Q ss_pred C
Q 012007 397 S 397 (473)
Q Consensus 397 ~ 397 (473)
+
T Consensus 232 G 232 (238)
T PF13360_consen 232 G 232 (238)
T ss_dssp T
T ss_pred C
Confidence 4
No 312
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.9e-05 Score=76.35 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=98.5
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC-ccccc--cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL-KEFSG--FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~-~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.+|++..+++++.|+.-|.+++|+-. ..... ..+-.+.+..+..+++..++|.|+..|.|.++-+..........+.
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 45888889999999999999999743 22222 2234566777788888888999999999999988764332222221
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC----eeeEEeecCCC
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC----KCLESINAHDD 278 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~----~~~~~~~~~~~ 278 (473)
... ..|...|+|++|++++..|++|...|+|.+-.+... ...+.+-.-..
T Consensus 118 ~~d--------------------------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds 171 (726)
T KOG3621|consen 118 PCD--------------------------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS 171 (726)
T ss_pred ccc--------------------------ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence 110 028899999999999999999999999999888762 11222333455
Q ss_pred ceeEEEEcCCCEEEE
Q 012007 279 AINSVVAGFDSLVFT 293 (473)
Q Consensus 279 ~v~~l~~~~~~~l~s 293 (473)
.|..+.....-+|++
T Consensus 172 ~IVQlD~~q~~LLVS 186 (726)
T KOG3621|consen 172 EIVQLDYLQSYLLVS 186 (726)
T ss_pred ceEEeecccceehHh
Confidence 676666654434443
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.57 E-value=3.4e-06 Score=83.39 Aligned_cols=194 Identities=11% Similarity=0.154 Sum_probs=136.4
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc
Q 012007 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN 325 (473)
Q Consensus 246 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 325 (473)
++..++.|+....+..+|+++.+..+........|.-+.. .+..+++|...|+|.+-|.+ .......+..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~-Nnr~lf~G~t~G~V~LrD~~------s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY-NNRNLFCGDTRGTVFLRDPN------SFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe-cCcEEEeecccceEEeecCC------cCceeeeeecccc
Confidence 4456778888888999999998887776655545555543 33489999999999999986 3445788899999
Q ss_pred cEEEEEEccCCCEEEEeCC---------CCcEEEEecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecC
Q 012007 326 AVTALAVNQESAVVYCGSS---------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 326 ~v~~l~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~ 395 (473)
.|.++.. .|+.|++++. |..|++||++....+.-+...-......+.|. ...+++++..|...+-|..
T Consensus 219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccc
Confidence 9987766 4778887764 56689999987544322211112233445554 5678888889999999843
Q ss_pred CCC-ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 396 ESG-AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 396 ~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
+-. +..-+..+......+..+++++++. .++.|..+|.|.+|. ...++.....
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-------------alafgd~~g~v~~wa-~~~~P~Fn~~ 350 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGD-------------ALAFGDHEGHVNLWA-DRPQPQFNEY 350 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCc-------------eEEEecccCcEeeec-CCCCCccCCC
Confidence 311 1123333444455699999999998 899999999999999 5555554443
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.8e-06 Score=74.37 Aligned_cols=256 Identities=9% Similarity=0.116 Sum_probs=143.8
Q ss_pred EEEeeCC--ccccccccCcccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceE
Q 012007 145 IRVWKNL--KEFSGFKSNSGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYV 221 (473)
Q Consensus 145 i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (473)
|++.+.. +...-+..|...|..++|+|..+ ++..++.+.+|+|.|+++........
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~--------------------- 233 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI--------------------- 233 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---------------------
Confidence 5555422 33445666888999999999877 78889999999999999876554443
Q ss_pred EEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCee-eEEeec--CCCceeEEEEcC-------CCE
Q 012007 222 EVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKC-LESINA--HDDAINSVVAGF-------DSL 290 (473)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~--~~~~v~~l~~~~-------~~~ 290 (473)
-...+++++|.-+ .++++.|...|.|.|||++..+- +..+.+ ...+|..++.-+ .++
T Consensus 234 ------------a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~ggl 301 (463)
T KOG1645|consen 234 ------------AYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGL 301 (463)
T ss_pred ------------ccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccce
Confidence 3378999999874 56899999999999999986542 222221 223444443222 234
Q ss_pred EEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-C------cEEE-EecCCcccccce
Q 012007 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-G------LVNF-WECEKHLSHGGV 362 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g------~i~i-wd~~~~~~~~~~ 362 (473)
++.... .+..|+...... .... ....+..+.+.++.+++..+.++..... . .|-. -|...+...-..
T Consensus 302 Lv~~lt--~l~f~ei~~s~~--~~p~-vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~ 376 (463)
T KOG1645|consen 302 LVFALT--VLQFYEIVFSAE--CLPC-VLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGK 376 (463)
T ss_pred EEeeeh--hhhhhhhhcccc--CCCc-ccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeee
Confidence 443333 245666543211 1111 1112234566667777644444333221 1 0111 011111111111
Q ss_pred eecC---------cceEEEEEecCCEEE-EEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCC
Q 012007 363 LRGH---------KMAVLCLAAAGNLVF-SGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKG 432 (473)
Q Consensus 363 ~~~~---------~~~v~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~ 432 (473)
..++ .....--.++.++++ .|...+.+.+||..+ ...++.+.- ..+|.+++........
T Consensus 377 r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s---~evvQ~l~~-~epv~Dicp~~~n~~s------- 445 (463)
T KOG1645|consen 377 RRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS---FEVVQTLAL-SEPVLDICPNDTNGSS------- 445 (463)
T ss_pred cccccCCcccccccccceeccccccEEEEecCCcceeEEeccch---hheeeeccc-CcceeecceeecCCcc-------
Confidence 1111 111111123345444 455667899999998 566666654 4788888876653311
Q ss_pred CccEEEEEeeCCCcEEEEEcCC
Q 012007 433 DQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 433 ~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+|+.-. |..++|++.+.
T Consensus 446 ----yLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 446 ----YLALLT-DDRVHIYKNES 462 (463)
T ss_pred ----hhhhee-cceEEEEecCC
Confidence 566665 55788887653
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.4e-06 Score=79.37 Aligned_cols=224 Identities=15% Similarity=0.143 Sum_probs=151.6
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
|...|+.+.-. -.+++.+++.||.++.|.-..-....... ....|...|.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVK-----------------------------hFraHL~~I~ 57 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVK-----------------------------HFRAHLGVIL 57 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehh-----------------------------hhHHHHHHHH
Confidence 67777776654 34599999999999999765422111000 0112778889
Q ss_pred EEEEcCCCCEEEEEeC-CCCEEEEEcCCCeeeEEeec--CCCceeEEEEcCCC---EEE-EEeCCCcEEEEeCcccCCCc
Q 012007 240 CLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINA--HDDAINSVVAGFDS---LVF-TGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~~~~~---~l~-s~~~dg~i~vwd~~~~~~~~ 312 (473)
+++.+-++-++.+.+. |..++++|+++...+.-++. -.+.+..+ .++.. .++ +.-.+|.+.++|-....
T Consensus 58 sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~--- 133 (558)
T KOG0882|consen 58 SLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDF--- 133 (558)
T ss_pred hhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCc---
Confidence 9999999999999777 99999999988766544332 22222222 23332 333 34457899999976322
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLW 392 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iw 392 (473)
........-|..+|..+.+.+.+..+++....|.|..|..+...+. .. +. ..|
T Consensus 134 -~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf---Pr----------------------~~-l~~ 186 (558)
T KOG0882|consen 134 -CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF---PR----------------------TN-LNF 186 (558)
T ss_pred -CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC---cc----------------------cc-ccc
Confidence 2233455668999999999999999999999999999997742221 10 01 124
Q ss_pred ecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 393 RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
.+.. ..-+..+.......+++.|+|++. .+.+-+.|..|+++.+..++....
T Consensus 187 ~~K~---eTdLy~f~K~Kt~pts~Efsp~g~-------------qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 187 ELKH---ETDLYGFPKAKTEPTSFEFSPDGA-------------QISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred cccc---cchhhcccccccCccceEEccccC-------------cccccCcccEEEEEEeccchhhhh
Confidence 4443 222333334456789999999998 799999999999999998764433
No 316
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.53 E-value=0.00015 Score=65.64 Aligned_cols=269 Identities=15% Similarity=0.224 Sum_probs=152.7
Q ss_pred cEEEeeCCcc-ccccccCcccEEEEEEeCCCCEEEEEeC----------CCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 144 NIRVWKNLKE-FSGFKSNSGLVKAIIISGDSNKIFTGHQ----------DGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 144 ~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
.+.|+|..+. +.... ..+-.-.+..+|+++.++++.. .-.|.+||..+........+...+...
T Consensus 18 rv~viD~d~~k~lGmi-~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~---- 92 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMI-DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ---- 92 (342)
T ss_dssp EEEEEETTTTEEEEEE-EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B------
T ss_pred eEEEEECCCCcEEEEe-ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe----
Confidence 5777774422 11111 2233445678999998887542 346999999988765554443211100
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC--CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCE
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLESINAHDDAINSVVAGFDSL 290 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~ 290 (473)
.......+.++.+++++++... -..|.|.|+...+.+.++.... ...+--..+.-
T Consensus 93 ---------------------~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~~~~ 149 (342)
T PF06433_consen 93 ---------------------VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSGNRG 149 (342)
T ss_dssp ---------------------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEETTE
T ss_pred ---------------------ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecCCCc
Confidence 1112334678889998888643 3569999999999988887432 22232233346
Q ss_pred EEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE-EEEEccCCCEEEEeCCCCcEEEEecCCcccc-c--------
Q 012007 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT-ALAVNQESAVVYCGSSDGLVNFWECEKHLSH-G-------- 360 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~-------- 360 (473)
+.+-|.||.+....+...++.. ......+.....++. .-++...+..++.-+.+|.|+--|+...... .
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~ 228 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTD 228 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-H
T ss_pred eEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCc
Confidence 8888999999999988665533 222223333333332 3344555555555778888888877643211 0
Q ss_pred ----ceeecCcceEEEEEecCCEEEEEe--------CCC--cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCc
Q 012007 361 ----GVLRGHKMAVLCLAAAGNLVFSGS--------ADR--NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426 (473)
Q Consensus 361 ----~~~~~~~~~v~~~~~~~~~l~s~~--------~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 426 (473)
.......-...++....+.|++-- .|+ .|-++|+.+ .+.+..+.. ..++.+|+.+.+.+-
T Consensus 229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t---~krv~Ri~l-~~~~~Si~Vsqd~~P-- 302 (342)
T PF06433_consen 229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT---HKRVARIPL-EHPIDSIAVSQDDKP-- 302 (342)
T ss_dssp HHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT---TEEEEEEEE-EEEESEEEEESSSS---
T ss_pred cccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC---CeEEEEEeC-CCccceEEEccCCCc--
Confidence 011112223455555444444322 122 266667776 566666653 346889999988763
Q ss_pred ccccCCCccEEEEE-eeCCCcEEEEEcCCCCC
Q 012007 427 EYHQKGDQRWTVYS-GSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 427 ~~~~~~~~~~~l~s-~s~Dg~v~iW~i~~~~~ 457 (473)
+|++ ...++.+.+||..+++.
T Consensus 303 ----------~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 303 ----------LLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp ----------EEEEEETTTTEEEEEETTT--E
T ss_pred ----------EEEEEcCCCCeEEEEeCcCCcE
Confidence 5554 45689999999998854
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.47 E-value=3.8e-06 Score=83.09 Aligned_cols=183 Identities=13% Similarity=0.173 Sum_probs=129.3
Q ss_pred cCCEEEEeeCCCcEEEeeCCccc--cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 132 SGDLLYTGSDSKNIRVWKNLKEF--SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~~~~--~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
++..++.|+-...+..+|..+.. +...-..+.|+-++. ++++|++|...|+|.+-|..+.+......
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~--------- 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD--------- 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee---------
Confidence 35566777766677777765332 222222333655554 67899999999999999998877655443
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC---------CCCEEEEEcCCCeeeEEeecCCCce
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW---------DKTLKVWRISDCKCLESINAHDDAI 280 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~---------dg~v~vwd~~~~~~~~~~~~~~~~v 280 (473)
.|.+.|..+.. .|++|++++. |.-|+|||++..+.+.-+..+.++
T Consensus 215 -----------------------aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P- 268 (1118)
T KOG1275|consen 215 -----------------------AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP- 268 (1118)
T ss_pred -----------------------ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-
Confidence 38888887654 6889999875 456899999988877766655554
Q ss_pred eEEEEcCC--CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 281 NSVVAGFD--SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 281 ~~l~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
.-+.+.|. ..+++++..|...+.|...-.+ ...-..........+..+.++++++.++.|..+|.|.+|.-
T Consensus 269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN--P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN--PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hhhhhcccccceEEEEecccceeeccccccCC--CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 34556665 3888999999999999442221 11122333444556999999999999999999999999973
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=2.9e-05 Score=76.69 Aligned_cols=204 Identities=18% Similarity=0.335 Sum_probs=134.2
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCc-eeEEEEcCC-CEEEEEeCCCc-----EEEEeCcccC
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA-INSVVAGFD-SLVFTGSADGT-----VKVWRRELQG 309 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-v~~l~~~~~-~~l~s~~~dg~-----i~vwd~~~~~ 309 (473)
.|+| |++.+..++.|+.+|.|.+.+ +..+.++.++++... |..+....+ .+|++.+.|+. |++|+++..+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4554 568889999999999988887 345556888888777 444444333 37777776654 8999998654
Q ss_pred CCc-ceeee-eeec-----cCCccEEEEEEccCCCEEEEeCCCCcEEEEecC--C-cccccceeecCcceEEEEEe--cC
Q 012007 310 KGT-KHCLA-QVLL-----KHENAVTALAVNQESAVVYCGSSDGLVNFWECE--K-HLSHGGVLRGHKMAVLCLAA--AG 377 (473)
Q Consensus 310 ~~~-~~~~~-~~~~-----~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~--~-~~~~~~~~~~~~~~v~~~~~--~~ 377 (473)
+.. ..+.. .... ....++.+++.+.+-..+++|-.+|.|..+.-+ . .............+|+.+.. ++
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 333 22220 1111 235678999999999999999999999998532 1 11111222234456766654 45
Q ss_pred CE-EEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 378 NL-VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 378 ~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.. ++++. -..|.+|.+... . ..+..+..|...+.|-.+++... .|++++. ..|.+|+.....
T Consensus 184 ~s~lFv~T-t~~V~~y~l~gr-~-p~~~~ld~~G~~lnCss~~~~t~-------------qfIca~~-e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 184 KSVLFVAT-TEQVMLYSLSGR-T-PSLKVLDNNGISLNCSSFSDGTY-------------QFICAGS-EFLYFYDSDGRG 246 (933)
T ss_pred ceeEEEEe-cceeEEEEecCC-C-cceeeeccCCccceeeecCCCCc-------------cEEEecC-ceEEEEcCCCcc
Confidence 55 44444 457999999852 2 34566778888999999998765 3555543 358888887665
Q ss_pred CCcc
Q 012007 457 PDLK 460 (473)
Q Consensus 457 ~~~~ 460 (473)
+.+.
T Consensus 247 ~cfa 250 (933)
T KOG2114|consen 247 PCFA 250 (933)
T ss_pred eeee
Confidence 5544
No 319
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=2e-07 Score=91.44 Aligned_cols=197 Identities=15% Similarity=0.206 Sum_probs=131.8
Q ss_pred CccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 151 LKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 151 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
.+..+.+..|....+|++|+.+.+.|+.|+..|.|+++++.++.......
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n------------------------------ 1140 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN------------------------------ 1140 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc------------------------------
Confidence 35566778899999999999999999999999999999999987543332
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCC--CEEEEEcCC-CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCc
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDK--TLKVWRISD-CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg--~v~vwd~~~-~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~ 306 (473)
+|..+|+-+.-+.+|..+++.+.-. -..+|++.. +...+++.. -.++.|+... .-+.|+......+||+.
T Consensus 1141 --cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvq 1214 (1516)
T KOG1832|consen 1141 --CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQ 1214 (1516)
T ss_pred --ccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecc
Confidence 3999999999888998877765433 477999864 455555542 3456676554 33445555778899998
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcce-EEEEEecCCEEEEEeC
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMA-VLCLAAAGNLVFSGSA 385 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~s~~~ 385 (473)
+..... .......+....-.+..|+|+..+++ .|| .+||.+...... .+...... --.|.|+|..++.-+.
T Consensus 1215 T~~~l~--tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh-~FD~ft~~~~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1215 TCSPLQ--TYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIH-RFDQFTDYGGGGFHPSGNEVIINSE 1286 (1516)
T ss_pred cCcHHH--HhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHh-hhhhheecccccccCCCceEEeech
Confidence 543211 11111112222336788999888775 355 579998753332 22211111 1346778888887663
Q ss_pred CCcEEEEecCC
Q 012007 386 DRNICLWRREE 396 (473)
Q Consensus 386 dg~i~iwd~~~ 396 (473)
|||+++
T Consensus 1287 -----IwD~RT 1292 (1516)
T KOG1832|consen 1287 -----IWDMRT 1292 (1516)
T ss_pred -----hhhhHH
Confidence 899887
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.45 E-value=6.8e-05 Score=76.92 Aligned_cols=228 Identities=11% Similarity=0.058 Sum_probs=129.8
Q ss_pred cccEEEEEe--cCCEEEEeeCCCcEEEeeCCcccccccc-CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 123 EGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFKS-NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 123 ~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
.+.|.++.+ ++.-++.+..+|.|.+-|.........+ -.+.|.+++|+||+..++....++++.+-.- +.......
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhcc
Confidence 356777776 4677888888899999987654444443 4578999999999999999888887766432 11111111
Q ss_pred eecc-ccccceeEe-ecCCCcceEEEeecc--------eeeE---eeccCCeeEEEEcCCCCEEEEEe----CC-CCEEE
Q 012007 200 RVGS-LPTFKDYVK-SSVNPKNYVEVRRNR--------SVLK---IRHYDAVSCLSLNAEQGLLYSGS----WD-KTLKV 261 (473)
Q Consensus 200 ~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~---~~~~~~v~~l~~~~~~~~l~s~s----~d-g~v~v 261 (473)
.... ......++. .-......+.....+ .... +.-.+.=..|.|--||.++++.. .+ ..|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 1100 000000000 000000000000000 0000 00112234688999999999842 23 78999
Q ss_pred EEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEE---eCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCC
Q 012007 262 WRISDCKCLESINAHDDAINSVVAGFDS-LVFTG---SADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337 (473)
Q Consensus 262 wd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 337 (473)
||-+ |..-..-....+.-.+++|-|.| .+++- ..|+.|.++..+.-. ..............|..++|+.++.
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~---hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR---HGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc---ccccccCCcccccchheeeecCCCC
Confidence 9976 44322222334445678999988 44443 346679999765211 1111222333344599999999999
Q ss_pred EEEE---eCCCCcEEEEecCC
Q 012007 338 VVYC---GSSDGLVNFWECEK 355 (473)
Q Consensus 338 ~l~~---~~~dg~i~iwd~~~ 355 (473)
.|++ ......|++|-+.+
T Consensus 303 iLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ceeeeecccccceEEEEEecC
Confidence 9988 45555699998765
No 321
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.38 E-value=0.00038 Score=66.06 Aligned_cols=256 Identities=11% Similarity=0.165 Sum_probs=129.9
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeee-EEeecccc-ccceeEeecCCCcceEEEee---------cce-ee
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASV-HKRVGSLP-TFKDYVKSSVNPKNYVEVRR---------NRS-VL 230 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~-~~ 230 (473)
.|+.+.|.++..-|+.|...|.|.||.+...+.-. ........ ....+ .....+..+.++.. ..+ .+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRF-SLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S---GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccc-cccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999998899999999999999876553322 00000000 00000 00000111111111 111 11
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee--c------CCCceeEEEEc-----CCC----EEEE
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN--A------HDDAINSVVAG-----FDS----LVFT 293 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~------~~~~v~~l~~~-----~~~----~l~s 293 (473)
.....++|++++.+ |=.+++.|..+|.+.|.|++....+..-. . ....++++.|. .|+ .+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 22247899999997 55699999999999999998887776532 1 23456777664 233 7889
Q ss_pred EeCCCcEEEEeCcccCCC-cceeeeeeeccCCccEEEEE-EccC-C-------------------CEEEEeCCCCcEEEE
Q 012007 294 GSADGTVKVWRRELQGKG-TKHCLAQVLLKHENAVTALA-VNQE-S-------------------AVVYCGSSDGLVNFW 351 (473)
Q Consensus 294 ~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~l~-~~~~-~-------------------~~l~~~~~dg~i~iw 351 (473)
|...|.+.+|.+...... ...........+.+.|..|. ++.+ | .-++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 999999999988632211 12222223335666666665 3221 0 123333446789999
Q ss_pred ecCCcccccceeecC-cceEEEEE-----ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC----CCCceeEEEEecC
Q 012007 352 ECEKHLSHGGVLRGH-KMAVLCLA-----AAGNLVFSGSADRNICLWRREESGAHSCLAVLTG----HTGPVKCLAVEED 421 (473)
Q Consensus 352 d~~~~~~~~~~~~~~-~~~v~~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~~V~~l~~~~~ 421 (473)
...+.+...+.+..+ .....++. ..+..|++-..+|.|++|.+-. .+.+....- +...+....++++
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~---Lkei~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS---LKEIKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-----EEEEEE-SS---HHHHTT-EE-TT
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC---chHhhcccCCCccccccccccEECCC
Confidence 887655443343221 11122332 2467788889999999999988 344443332 2234566777888
Q ss_pred CC
Q 012007 422 RD 423 (473)
Q Consensus 422 ~~ 423 (473)
|.
T Consensus 318 Gd 319 (395)
T PF08596_consen 318 GD 319 (395)
T ss_dssp S-
T ss_pred CC
Confidence 87
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.33 E-value=1.3e-05 Score=77.36 Aligned_cols=162 Identities=19% Similarity=0.188 Sum_probs=107.5
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
+...|.--+++..+++++.|+.-|.|++|+-..++....-. +....+..+..++.. ++++|+..|.|.++-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 45556666677788999999999999999966554433222 233444555566666 7788888999999988753332
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc---ccccceeecCcceEEEEEecCCEEEEEeCCCc
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH---LSHGGVLRGHKMAVLCLAAAGNLVFSGSADRN 388 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 388 (473)
........-..|...|++++|++++..+++|...|+|.+-.+... ......+......|..++.-..+|++++--..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~ 191 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC 191 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh
Confidence 222222223347889999999999999999999999998877651 11223334455677777766666655554433
Q ss_pred EEEEecCC
Q 012007 389 ICLWRREE 396 (473)
Q Consensus 389 i~iwd~~~ 396 (473)
+ +++++.
T Consensus 192 ~-Lc~tE~ 198 (726)
T KOG3621|consen 192 I-LCQTEA 198 (726)
T ss_pred h-eeecch
Confidence 3 444443
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.31 E-value=0.0016 Score=55.74 Aligned_cols=138 Identities=15% Similarity=0.138 Sum_probs=83.4
Q ss_pred CCEEEEeeCCCcEEEeeCCcccccccc-CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 133 GDLLYTGSDSKNIRVWKNLKEFSGFKS-NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
..+++.|+..+.+.--|....-..++. -...|.+-+.- -|++++.|+..|.+++.++.++.....+...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--------- 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--------- 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh---------
Confidence 345555665555555553322111111 12223332222 3668999999999999999998655444321
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeE-EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CC
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSC-LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DS 289 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~ 289 (473)
+.|.+ -...+++.+++.|+.|++.+..|.++..++...+.......+-+..+ ++
T Consensus 93 ------------------------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~ 148 (354)
T KOG4649|consen 93 ------------------------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDG 148 (354)
T ss_pred ------------------------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCc
Confidence 22222 23467899999999999999999999999988775554444444445 34
Q ss_pred EEEEEeCCCcEEEEe
Q 012007 290 LVFTGSADGTVKVWR 304 (473)
Q Consensus 290 ~l~s~~~dg~i~vwd 304 (473)
.|+.+...|.+.-..
T Consensus 149 sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 149 SLYAAITAGAVLAVT 163 (354)
T ss_pred eEEEEeccceEEEEc
Confidence 555555555544433
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.26 E-value=0.0014 Score=58.77 Aligned_cols=188 Identities=16% Similarity=0.164 Sum_probs=111.2
Q ss_pred EEEeCCCCEEEEEeC-----CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 167 IIISGDSNKIFTGHQ-----DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 167 l~~s~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
-+|++||++|++.-. .|.|-|||.... ......... |.-.-..+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E~~s------------------------------~GIGPHel 104 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGEFPS------------------------------HGIGPHEL 104 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeEecC------------------------------CCcChhhE
Confidence 479999999998644 488999999832 222111111 22233456
Q ss_pred EEcCCCCEEEEEe------------------CCCCEEEEEcCCCeeeEEee----cCCCceeEEEEcCCCEEEEEeCC-C
Q 012007 242 SLNAEQGLLYSGS------------------WDKTLKVWRISDCKCLESIN----AHDDAINSVVAGFDSLVFTGSAD-G 298 (473)
Q Consensus 242 ~~~~~~~~l~s~s------------------~dg~v~vwd~~~~~~~~~~~----~~~~~v~~l~~~~~~~l~s~~~d-g 298 (473)
.+.||++.|+++. .+-.+...|..+|+.+.... .|...|..+++..++.++.+... |
T Consensus 105 ~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg 184 (305)
T PF07433_consen 105 LLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQG 184 (305)
T ss_pred EEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCC
Confidence 7788887777763 23456667788888877643 37778999999999866665432 2
Q ss_pred -------cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecCCcccccceeecCcceE
Q 012007 299 -------TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHLSHGGVLRGHKMAV 370 (473)
Q Consensus 299 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 370 (473)
.|-+++.... .............-...+-+|++++++.++++ +-..+.+.+||..++...... .-..+
T Consensus 185 ~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~---~l~D~ 260 (305)
T PF07433_consen 185 DPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV---PLPDA 260 (305)
T ss_pred CCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc---ccCce
Confidence 1333432210 00000001112334567899999999987755 456778999999886543221 12234
Q ss_pred EEEEec-CCEEEEEeCCCcEE
Q 012007 371 LCLAAA-GNLVFSGSADRNIC 390 (473)
Q Consensus 371 ~~~~~~-~~~l~s~~~dg~i~ 390 (473)
+.+++. +.++++.+ .|.+.
T Consensus 261 cGva~~~~~f~~ssG-~G~~~ 280 (305)
T PF07433_consen 261 CGVAPTDDGFLVSSG-QGQLI 280 (305)
T ss_pred eeeeecCCceEEeCC-CccEE
Confidence 555554 33555544 45433
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.21 E-value=0.0036 Score=60.11 Aligned_cols=113 Identities=15% Similarity=0.158 Sum_probs=78.0
Q ss_pred ccCCeeEEEEcC-CCCEEEEE----eCCCC----EEEEEcCCCee--e--EEeecCCCceeEEEEcCCC-EEEEEeCCCc
Q 012007 234 HYDAVSCLSLNA-EQGLLYSG----SWDKT----LKVWRISDCKC--L--ESINAHDDAINSVVAGFDS-LVFTGSADGT 299 (473)
Q Consensus 234 ~~~~v~~l~~~~-~~~~l~s~----s~dg~----v~vwd~~~~~~--~--~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~ 299 (473)
......++.|+. +...+.+. +.+|. -.+|++...+. + ..+ .....|.+++++|+. .++.|+.||.
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgS 282 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGS 282 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCe
Confidence 334446667776 33444443 33444 34566654432 1 122 356788999999987 9999999999
Q ss_pred EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC
Q 012007 300 VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 300 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
|.+||...+ ........-..+.++|+|+|.++++|+..|.+.+||+.-
T Consensus 283 iiLyD~~~~--------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 283 IILYDTTRG--------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEEcCCC--------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 999998632 111223345678999999999999999999999999864
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=7.7e-05 Score=73.56 Aligned_cols=107 Identities=12% Similarity=0.152 Sum_probs=77.3
Q ss_pred EEEEEecCCEEEEee----CCCcEEEe-eCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEe
Q 012007 126 IYSLAASGDLLYTGS----DSKNIRVW-KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKR 200 (473)
Q Consensus 126 V~~~~~~g~~l~tg~----~dg~i~vw-d~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 200 (473)
|.++.|...++|+++ ..|.|-|| |..++.... .-.-.+++++|+|..-.|+.|-.-|.+.+|...+.+......
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecCCCCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 344555555666554 35788888 444332221 122346779999998889999889999999987665322111
Q ss_pred eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
.|..+|..+.|+++|+.|+++..-|.|.+|.+.
T Consensus 99 --------------------------------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 --------------------------------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred --------------------------------CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 299999999999999999999999999999875
No 327
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.17 E-value=0.0046 Score=55.49 Aligned_cols=220 Identities=12% Similarity=0.108 Sum_probs=129.1
Q ss_pred EEEEEEeC-CCCEEEEEeCCCe-EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 164 VKAIIISG-DSNKIFTGHQDGK-IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 164 V~~l~~s~-~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
...++.+| ....++.+-.-|. ..+||..+++........ ....+.+| -
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~------------------------~gRHFyGH------g 56 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP------------------------PGRHFYGH------G 56 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC------------------------CCCEEecC------E
Confidence 45677788 4455566655554 678999888765433321 11122244 5
Q ss_pred EEcCCCCEEEEEe-----CCCCEEEEEcC-CCeeeEEeecCCCceeEEEEcCCC-EEEEEeC-------CC---------
Q 012007 242 SLNAEQGLLYSGS-----WDKTLKVWRIS-DCKCLESINAHDDAINSVVAGFDS-LVFTGSA-------DG--------- 298 (473)
Q Consensus 242 ~~~~~~~~l~s~s-----~dg~v~vwd~~-~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~-------dg--------- 298 (473)
.|++||++|++.- ..|.|-|||.. +.+.+.++..|.-.-..+.+.|++ .|+++.. .|
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 7999999999974 34789999998 678888898887777778888888 5554421 12
Q ss_pred --cEEEEeCcccCCCcceeeeeee--ccCCccEEEEEEccCCCEEEEeCCCC-------cEEEEecCCcccccc----ee
Q 012007 299 --TVKVWRRELQGKGTKHCLAQVL--LKHENAVTALAVNQESAVVYCGSSDG-------LVNFWECEKHLSHGG----VL 363 (473)
Q Consensus 299 --~i~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~----~~ 363 (473)
.+.+.|..++.. .....+ ..|...|..+++.++|..++..-..| .|-+++......... ..
T Consensus 137 ~psL~~ld~~sG~l----l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 137 QPSLVYLDARSGAL----LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQW 212 (305)
T ss_pred CCceEEEecCCCce----eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHH
Confidence 233333332211 111123 34778899999999988776654433 244454433211111 11
Q ss_pred ecCcceEEEE--EecCCEEEEE-eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 364 RGHKMAVLCL--AAAGNLVFSG-SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 364 ~~~~~~v~~~--~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
..-...+-++ +.++.++++. =..+.+.+||..+ ...+....- ..+..++..+++
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t---g~~~~~~~l--~D~cGva~~~~~ 269 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT---GRLLGSVPL--PDACGVAPTDDG 269 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC---CCEeecccc--CceeeeeecCCc
Confidence 1222344444 4567666554 4667899999988 344544332 234555555554
No 328
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.15 E-value=0.00046 Score=65.46 Aligned_cols=206 Identities=12% Similarity=0.125 Sum_probs=113.3
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe-------------------------------------------eeEEe
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK-------------------------------------------CLESI 273 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~-------------------------------------------~~~~~ 273 (473)
.|+.+.|.++...|++|...|.|.||.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999998999999999999998653211 11222
Q ss_pred ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec------cCCccEEEEEEcc-----CC---CEE
Q 012007 274 NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL------KHENAVTALAVNQ-----ES---AVV 339 (473)
Q Consensus 274 ~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~~~v~~l~~~~-----~~---~~l 339 (473)
....++|++++.+.-|+++.|..+|.+.|.|+|... ......+. .....|+++.|.- |+ -.+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPa----vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPA----VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTE----EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCe----EEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 344678999999988999999999999999997321 11111111 2345678888762 33 478
Q ss_pred EEeCCCCcEEEEecCC--ccc----ccceeecCcceEEEEEe---c---------------------CCEEEEEeCCCcE
Q 012007 340 YCGSSDGLVNFWECEK--HLS----HGGVLRGHKMAVLCLAA---A---------------------GNLVFSGSADRNI 389 (473)
Q Consensus 340 ~~~~~dg~i~iwd~~~--~~~----~~~~~~~~~~~v~~~~~---~---------------------~~~l~s~~~dg~i 389 (473)
++|+..|.+.+|.+-- ... .......+...+..+.+ + ..++++++ +..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccce
Confidence 8999999999997641 111 11111234455544432 1 12444444 6789
Q ss_pred EEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 390 CLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 390 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+++...+. +.........-....+.+-+-.. ......|++-..||.|+++.+...+..
T Consensus 238 rv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~--------~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 238 RVFKPPKS---KGAHKSFDDPFLCSSASVVPTIS--------RNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EEE-TT------EEEEE-SS-EEEEEEEEEEEE---------EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred EEEeCCCC---cccceeeccccccceEEEEeecc--------cCCceEEEEEECCCcEEEEECCCchHh
Confidence 99998773 33332222222334444532100 001117888889999999999876544
No 329
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.15 E-value=0.00054 Score=64.03 Aligned_cols=182 Identities=15% Similarity=0.170 Sum_probs=112.7
Q ss_pred CCEEEEEcCCCeeeEEeecC-CCceeEEE---EcC-----CCEEEEEeC----------CCcEEEEeCcccCCCcceeee
Q 012007 257 KTLKVWRISDCKCLESINAH-DDAINSVV---AGF-----DSLVFTGSA----------DGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 257 g~v~vwd~~~~~~~~~~~~~-~~~v~~l~---~~~-----~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~ 317 (473)
..|++.|..+.+.+..+.-. ...+.+++ +.. ..++++|+. .|.|.++++............
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888887777665422 23344443 332 336776654 288999998753110111222
Q ss_pred eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc-cccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 318 QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL-SHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.......++|++++-- ++.++++. ++.|.+|++.... ............+.++...++++++|.....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 2233457889999877 44444333 4789999998765 333333334457888888899999999999999886654
Q ss_pred CCc-eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 397 SGA-HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 397 ~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
... ...+.. ......++++.|-+++. .++.+..+|.|.++.....
T Consensus 159 ~~~~l~~va~-d~~~~~v~~~~~l~d~~-------------~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 159 ENNKLILVAR-DYQPRWVTAAEFLVDED-------------TIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp TTE-EEEEEE-ESS-BEEEEEEEE-SSS-------------EEEEEETTSEEEEEEE-SS
T ss_pred cCCEEEEEEe-cCCCccEEEEEEecCCc-------------EEEEEcCCCeEEEEEECCC
Confidence 221 223332 23355689999987765 7999999999999999743
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.14 E-value=2.3e-06 Score=81.40 Aligned_cols=198 Identities=20% Similarity=0.227 Sum_probs=123.8
Q ss_pred cccEEEEEEeCCC--CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 161 SGLVKAIIISGDS--NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 161 ~~~V~~l~~s~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
...+.|+++.-+. ..++.|..+|.|-+-.+......... ...++...+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E------------------------------~tp~~ar~C 105 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAE------------------------------VTPGYARPC 105 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccce------------------------------ecccccccc
Confidence 3457777775443 47888999999998877654322111 111388899
Q ss_pred eEEEEcC-CCCEEEEEe----CCCCEEEEEcCCC--eeeEE--eec-CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcc
Q 012007 239 SCLSLNA-EQGLLYSGS----WDKTLKVWRISDC--KCLES--INA-HDDAINSVVAGFDS-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 239 ~~l~~~~-~~~~l~s~s----~dg~v~vwd~~~~--~~~~~--~~~-~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~ 307 (473)
++++|++ |.+.||+|- .|..+.|||+.++ .+... +.+ ......+++|..+. ++++|.....++++|++.
T Consensus 106 t~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 106 TSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred cccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh
Confidence 9999998 566777763 4567999999876 22222 222 33455678887665 778888888999999973
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEe-cCCcccccceeecCc----ceEEEEEec---CC
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWE-CEKHLSHGGVLRGHK----MAVLCLAAA---GN 378 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~----~~v~~~~~~---~~ 378 (473)
.. .....-....+..+.+.| .+.++++- .||.|.+|| .++-+.+........ ..+..+++. ..
T Consensus 186 s~-------~~~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg 257 (783)
T KOG1008|consen 186 SL-------DSVSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG 257 (783)
T ss_pred hh-------hhhhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc
Confidence 21 111122234566788888 66777554 499999999 333222222221111 135555554 34
Q ss_pred EEEEEeC-CCcEEEEecCC
Q 012007 379 LVFSGSA-DRNICLWRREE 396 (473)
Q Consensus 379 ~l~s~~~-dg~i~iwd~~~ 396 (473)
++++... .++|+++++..
T Consensus 258 lla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 258 LLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hhhhhccCcceEEEecccc
Confidence 5555554 47899999863
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=3.5e-05 Score=69.54 Aligned_cols=155 Identities=15% Similarity=0.169 Sum_probs=102.8
Q ss_pred EEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC
Q 012007 259 LKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES 336 (473)
Q Consensus 259 v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 336 (473)
|++.+..+.+....+..+...|..++++|.. ++..++.+..|+|.|+++ .........+ ..+++++|.-+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet------~~~vssy~a~-~~~wSC~wDlde 247 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET------SCVVSSYIAY-NQIWSCCWDLDE 247 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc------ceeeeheecc-CCceeeeeccCC
Confidence 7777777777777778888999999999875 788999999999999973 2334444455 789999998754
Q ss_pred -CEEEEeCCCCcEEEEecCCcccccceeec--CcceEEEEEe--------cCCEEEEEeCCCcEEEEecCCCCc-eeEEE
Q 012007 337 -AVVYCGSSDGLVNFWECEKHLSHGGVLRG--HKMAVLCLAA--------AGNLVFSGSADRNICLWRREESGA-HSCLA 404 (473)
Q Consensus 337 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~--------~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~ 404 (473)
.+|++|..+|.|.|||++....+...+.+ ...+|..+++ .|.+|+....+ +..|++..... ..++.
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vl 325 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVL 325 (463)
T ss_pred cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccc
Confidence 78999999999999999876554443333 1233444332 35566666544 66787754221 22222
Q ss_pred EecCCCCceeEEEEecCCC
Q 012007 405 VLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 405 ~~~~h~~~V~~l~~~~~~~ 423 (473)
.+ +..+...+++.++..+
T Consensus 326 el-e~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 326 EL-EPPGICISMQYHGVSN 343 (463)
T ss_pred cc-CCCcceeeeeecCccc
Confidence 22 2244555555555433
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=3e-06 Score=83.53 Aligned_cols=172 Identities=13% Similarity=0.199 Sum_probs=119.7
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCC-cEEEEeCcccCC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADG-TVKVWRRELQGK 310 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg-~i~vwd~~~~~~ 310 (473)
|....+|++|+-+.+.|+.|+..|.|+++++.+|........|..+|+-+.-+.+| +|.+.+... -..+|+....
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~-- 1177 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST-- 1177 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc--
Confidence 77889999999999999999999999999999999999999999999999988887 333333333 5789998621
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecC-----cceEEEEEecCCEEEEEeC
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGH-----KMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~l~s~~~ 385 (473)
...... -..-.++.|+.....-+.|+......+||+++...+...+.+- ......|+|+..+++-
T Consensus 1178 ---~~~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln--- 1247 (1516)
T KOG1832|consen 1178 ---GGPRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN--- 1247 (1516)
T ss_pred ---cCcccc----ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---
Confidence 111111 2334678888765555667666789999999876655444322 2234556677777663
Q ss_pred CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 386 DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
|| .+||++.. ..+..+...+.. -.-.|+|.+.
T Consensus 1248 dG--vLWDvR~~---~aIh~FD~ft~~-~~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1248 DG--VLWDVRIP---EAIHRFDQFTDY-GGGGFHPSGN 1279 (1516)
T ss_pred Cc--eeeeeccH---HHHhhhhhheec-ccccccCCCc
Confidence 44 47999873 444444433321 2335888887
No 333
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.09 E-value=0.00062 Score=69.22 Aligned_cols=136 Identities=15% Similarity=0.227 Sum_probs=94.6
Q ss_pred CCCCEEEEEcCCCeeeEEeecCCCc-eeEEEEcC------CCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccE
Q 012007 255 WDKTLKVWRISDCKCLESINAHDDA-INSVVAGF------DSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAV 327 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~~~~~~~-v~~l~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 327 (473)
....|+-.|++.|+.+..++.+... |..++-.. ....+.|-.+..|..||.|..+..... ............
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-~~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-SQSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee-ccccccccCCCc
Confidence 4578999999999999999988765 66654321 226788889999999999965411000 011122345567
Q ss_pred EEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE--EEecCCEEEEEeCCCcEEEEec
Q 012007 328 TALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC--LAAAGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 328 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~s~~~dg~i~iwd~ 394 (473)
+|++-..+| +||+|+.+|.||+||-- +......+.+-..+|.. ++.||++|++.+ +..+.+++.
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 788877766 58899999999999943 34444555565666755 457899988877 557777775
No 334
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.07 E-value=0.0081 Score=54.76 Aligned_cols=245 Identities=13% Similarity=0.130 Sum_probs=131.7
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccc
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
....++.|+.|+.+| +.+++... .......+...|..+...++-+.|++-+ |+.+.++++..-...........+..
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 344688999999998 88888721 1111112333499999999887777764 59999999876554332110000000
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEE---EcCCCCEEEEEeCCCCEEEEEcCCC-----eeeEEeecCCCc
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS---LNAEQGLLYSGSWDKTLKVWRISDC-----KCLESINAHDDA 279 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~---~~~~~~~l~s~s~dg~v~vwd~~~~-----~~~~~~~~~~~~ 279 (473)
. ...........+...+ -......|+++- ...|.+|..... +..+++.. .+.
T Consensus 81 ~------------------~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~l-p~~ 140 (275)
T PF00780_consen 81 R------------------SLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISL-PDP 140 (275)
T ss_pred c------------------cccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEc-CCC
Confidence 0 0000111233344444 112333444444 558888887552 45555553 467
Q ss_pred eeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee---------eccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 280 INSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV---------LLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 280 v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
+..+.|. ++.++.|. .....+.|+..+.. ..+... ......++..+... ++.+|++- |..-.+
T Consensus 141 ~~~i~~~-~~~i~v~~-~~~f~~idl~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~f 212 (275)
T PF00780_consen 141 PSSIAFL-GNKICVGT-SKGFYLIDLNTGSP---SELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVF 212 (275)
T ss_pred cEEEEEe-CCEEEEEe-CCceEEEecCCCCc---eEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEE
Confidence 8888887 44555555 44577888874321 111100 00111233333443 45666553 334444
Q ss_pred EecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 351 WECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
.|..........+. -......+.....||++.+.+ .|.||++.+ .++++.+..
T Consensus 213 v~~~G~~~r~~~i~-W~~~p~~~~~~~pyli~~~~~-~iEV~~~~~---~~lvQ~i~~ 265 (275)
T PF00780_consen 213 VNKNGEPSRKSTIQ-WSSAPQSVAYSSPYLIAFSSN-SIEVRSLET---GELVQTIPL 265 (275)
T ss_pred EcCCCCcCcccEEE-cCCchhEEEEECCEEEEECCC-EEEEEECcC---CcEEEEEEC
Confidence 45543222212222 233556677778888888765 599999999 466666654
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.05 E-value=2.3e-06 Score=81.46 Aligned_cols=206 Identities=14% Similarity=0.164 Sum_probs=133.6
Q ss_pred ccCCeeEEEEcCC--CCEEEEEeCCCCEEEEEcCCCee--eEEeecCCCceeEEEEcCCC--EEEEEe----CCCcEEEE
Q 012007 234 HYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISDCKC--LESINAHDDAINSVVAGFDS--LVFTGS----ADGTVKVW 303 (473)
Q Consensus 234 ~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~v~~l~~~~~~--~l~s~~----~dg~i~vw 303 (473)
....+.|+++.-+ ..++++|..+|.|-+-.++...- ....+.+....++++|.+-. .|++|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 4566788887653 45889999999999988865322 34456778889999998763 666663 36679999
Q ss_pred eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe-cCCEEEE
Q 012007 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA-AGNLVFS 382 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s 382 (473)
|+...-....... ....+......+++|..+.+++++|.....++++|++........+......-..+.| .++|+++
T Consensus 135 di~s~ltvPke~~-~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCcccc-ccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence 9975411111111 1111233445688999899999999999999999998432222222111111234454 6788887
Q ss_pred EeCCCcEEEEec-CCCCceeEEEEecCCCC----ceeEEEEecCCCCCcccccCCCccEEEEEeeCC-CcEEEEEcCCC
Q 012007 383 GSADRNICLWRR-EESGAHSCLAVLTGHTG----PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD-KSVKVWRVSEH 455 (473)
Q Consensus 383 ~~~dg~i~iwd~-~~~~~~~~~~~~~~h~~----~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D-g~v~iW~i~~~ 455 (473)
-. ||.|.+||. .+ ...++..+..... .+..++|.|.... ++++...| ++|+.+++...
T Consensus 214 ~~-dg~iAiwD~~rn--ienpl~~i~~~~N~~~~~l~~~aycPtrtg------------lla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRN--IENPLQIILRNENKKPKQLFALAYCPTRTG------------LLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred cc-cCceeeccchhh--hccHHHHHhhCCCCcccceeeEEeccCCcc------------hhhhhccCcceEEEeccccc
Confidence 77 999999993 32 1233333332222 3899999998764 67777754 67899998653
No 336
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.01 E-value=0.0096 Score=59.03 Aligned_cols=273 Identities=12% Similarity=0.140 Sum_probs=139.5
Q ss_pred CCEEEEeeCCCcEEEeeCCcc--ccccccCcc------cE--EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 133 GDLLYTGSDSKNIRVWKNLKE--FSGFKSNSG------LV--KAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~--~~~~~~h~~------~V--~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
+..++.++.++.|.-.|.... +-.+..... .+ ..+... ++..++.++.+|.|..+|.++++..-.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 555666776777777775422 111111111 11 111221 2257888889999999999999876655432
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe---------CCCCEEEEEcCCCeeeEEe
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS---------WDKTLKVWRISDCKCLESI 273 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s---------~dg~v~vwd~~~~~~~~~~ 273 (473)
..... .+ .... ...+ .+..++.++ .++.|..+|..+|+.+..+
T Consensus 140 ~~~~~-~~----------------------~i~s---sP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 140 DQVPP-GY----------------------TMTG---APTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CCcCc-ce----------------------EecC---CCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence 11000 00 0000 0111 123444443 4678999999999988776
Q ss_pred ecCCC--------------------cee-EEEEcC-CCEEEEEeCCC------------------cEEEEeCcccCCCcc
Q 012007 274 NAHDD--------------------AIN-SVVAGF-DSLVFTGSADG------------------TVKVWRRELQGKGTK 313 (473)
Q Consensus 274 ~~~~~--------------------~v~-~l~~~~-~~~l~s~~~dg------------------~i~vwd~~~~~~~~~ 313 (473)
+.... .+. ...+.+ .+.++.++.++ .|.-+|..+++. .
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~--~ 269 (488)
T cd00216 192 YTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV--K 269 (488)
T ss_pred eccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE--E
Confidence 54211 011 123332 35778787665 677778765442 1
Q ss_pred eeeeeeeccCC--------cc-EEEEEEccCCC---EEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEE
Q 012007 314 HCLAQVLLKHE--------NA-VTALAVNQESA---VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVF 381 (473)
Q Consensus 314 ~~~~~~~~~~~--------~~-v~~l~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 381 (473)
.... ...+. .+ +..+. .-++. .+++++.+|.+..+|.+++...-...... ..++.+...++
T Consensus 270 W~~~--~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~~~vy 342 (488)
T cd00216 270 WFYQ--TTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE----QPMAYDPGLVY 342 (488)
T ss_pred EEee--CCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec----cccccCCceEE
Confidence 1111 11111 11 11111 01332 68888999999999998876543222110 01111223333
Q ss_pred EE------------------eCCCcEEEEecCCCCceeEEEEecCC--C------Cce--eEEEEecCCCCCcccccCCC
Q 012007 382 SG------------------SADRNICLWRREESGAHSCLAVLTGH--T------GPV--KCLAVEEDRDHDHEYHQKGD 433 (473)
Q Consensus 382 s~------------------~~dg~i~iwd~~~~~~~~~~~~~~~h--~------~~V--~~l~~~~~~~~~~~~~~~~~ 433 (473)
.+ ..+|.|.-.|+.+++ .+-..... . .+. ..++.. +.
T Consensus 343 v~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~--g~---------- 407 (488)
T cd00216 343 LGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATA--GN---------- 407 (488)
T ss_pred EccccccccCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEec--CC----------
Confidence 32 235667777777642 22222111 0 111 112222 22
Q ss_pred ccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 434 QRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 434 ~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
+|+.++.||.|+.+|..+++..++.
T Consensus 408 ---~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 408 ---LVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred ---eEEEECCCCeEEEEECCCCceeeEE
Confidence 6888889999999999998877663
No 337
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.98 E-value=0.011 Score=56.99 Aligned_cols=49 Identities=18% Similarity=0.384 Sum_probs=36.0
Q ss_pred cEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 144 NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 144 ~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
.|+||+.. +.+..+.-..+.|.++.|+.+. .|+.-..||.++++|+...
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc
Confidence 48888854 4444444444899999998865 5556679999999998643
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.96 E-value=0.0059 Score=53.87 Aligned_cols=201 Identities=13% Similarity=0.099 Sum_probs=106.2
Q ss_pred ccCCeeEEEEcCCCC-EEEEEeCCCCEEEEEcCCCeeeEEeecC-CCceeEEEEcCCCEEEEEe-CCCcEEEEeCcccCC
Q 012007 234 HYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKCLESINAH-DDAINSVVAGFDSLVFTGS-ADGTVKVWRRELQGK 310 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~l~s~~-~dg~i~vwd~~~~~~ 310 (473)
-.+.++.|+|+|+.+ ++++....+.|..++. +|+.++.+... .+....|++..++.++... .++.+.++++.....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence 445699999999755 6666677788888886 58888887644 3567888888777555554 588999998854322
Q ss_pred Ccceeee-----eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC---ccccc-cee------ecCcceEEEEEe
Q 012007 311 GTKHCLA-----QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK---HLSHG-GVL------RGHKMAVLCLAA 375 (473)
Q Consensus 311 ~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~-~~~------~~~~~~v~~~~~ 375 (473)
....... .....++..+..++|++.++.|+.+-...-..+|.+.. ..... ... .........++.
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 1111111 11124567799999999887777777666666776543 11100 000 001112233333
Q ss_pred c---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC------CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc
Q 012007 376 A---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHT------GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446 (473)
Q Consensus 376 ~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~------~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~ 446 (473)
+ +.+++.......|..+|... .....+....+.. ..--.|+|.+++. |+..++-+.
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~--------------LYIvsEpNl 243 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQG-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN--------------LYIVSEPNL 243 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT----------------EEEEETTTE
T ss_pred cCCCCeEEEEECCCCeEEEECCCC-CEEEEEEeCCcccCcccccCCccEEEECCCCC--------------EEEEcCCce
Confidence 3 66788888888999999543 2222222222211 2457899999986 555556665
Q ss_pred EEEE
Q 012007 447 VKVW 450 (473)
Q Consensus 447 v~iW 450 (473)
.+++
T Consensus 244 fy~f 247 (248)
T PF06977_consen 244 FYRF 247 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5544
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00031 Score=69.49 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=82.1
Q ss_pred EEEEEeCCCCEEEEEeC----CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 165 KAIIISGDSNKIFTGHQ----DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 165 ~~l~~s~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
+-..|+|...+++.++. .|.|-||-- +++...... -.-.+++
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~Vt---------------------------------~P~hatS 64 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDVT---------------------------------YPVHATS 64 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-CCCCCcccc---------------------------------cceehhh
Confidence 44568888888887764 477777732 332111000 1123567
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCc
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~ 306 (473)
++|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++| .++++..-|.+.+|...
T Consensus 65 LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 65 LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9999998889999999999999988877766677899999999999998 89999999999999876
No 340
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.92 E-value=0.0012 Score=49.29 Aligned_cols=101 Identities=26% Similarity=0.312 Sum_probs=70.2
Q ss_pred eeEEEEcC---C-CCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcc
Q 012007 238 VSCLSLNA---E-QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 238 v~~l~~~~---~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
|++|++.. + .+.|++|+.|..|++|+ ..+.+.++.. .+.|.+++....+.++.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~------ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQ------ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcc------
Confidence 45666554 2 26899999999999997 4466777764 4568888877778999999999999998531
Q ss_pred eeeeeeeccCCccEEEEEEcc-C--C-CEEEEeCCCCcEEE
Q 012007 314 HCLAQVLLKHENAVTALAVNQ-E--S-AVVYCGSSDGLVNF 350 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~-~--~-~~l~~~~~dg~i~i 350 (473)
.......+..++++++.. + | .-|++|-.+|.|-+
T Consensus 73 ---RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 ---RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 111112334466666544 2 2 46889989998753
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.88 E-value=0.0026 Score=61.29 Aligned_cols=219 Identities=12% Similarity=0.111 Sum_probs=104.3
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccc
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPT 206 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 206 (473)
.+.+|+|+++++++ ||.-.|+....... ...+.-...+|.+.+ .+|+-...+.|.|+.--.........
T Consensus 38 ls~npngr~v~V~g-~geY~iyt~~~~r~---k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~------ 106 (443)
T PF04053_consen 38 LSHNPNGRFVLVCG-DGEYEIYTALAWRN---KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIK------ 106 (443)
T ss_dssp EEE-TTSSEEEEEE-TTEEEEEETTTTEE---EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT----------
T ss_pred EEECCCCCEEEEEc-CCEEEEEEccCCcc---cccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEc------
Confidence 35667899988855 67778877322111 123556678898855 56666778889996322221111111
Q ss_pred cceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEc
Q 012007 207 FKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286 (473)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~ 286 (473)
....+..|-. |.+|...+.+ .|.+||+.+++.++.+... .|..+.|+
T Consensus 107 ---------------------------~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 107 ---------------------------LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp ----------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred ---------------------------CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 1112333322 7777777654 8999999999999999754 48999999
Q ss_pred CCCEEEEEeCCCcEEEEeCccc------CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc
Q 012007 287 FDSLVFTGSADGTVKVWRRELQ------GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG 360 (473)
Q Consensus 287 ~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 360 (473)
+++.+++-..+..+.+++.... ..+. .........-...|.+.+|..+ -++++ +.. .|+.+ -.+....
T Consensus 154 ~~g~~val~t~~~i~il~~~~~~~~~~~~~g~-e~~f~~~~E~~~~IkSg~W~~d-~fiYt-T~~-~lkYl--~~Ge~~~ 227 (443)
T PF04053_consen 154 DDGELVALVTKDSIYILKYNLEAVAAIPEEGV-EDAFELIHEISERIKSGCWVED-CFIYT-TSN-HLKYL--VNGETGI 227 (443)
T ss_dssp TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB--GGGEEEEEEE-S--SEEEEETT-EEEEE--TT-EEEEE--ETTEEEE
T ss_pred CCCCEEEEEeCCeEEEEEecchhcccccccCc-hhceEEEEEecceeEEEEEEcC-EEEEE-cCC-eEEEE--EcCCcce
Confidence 9984443344667888876532 0000 0011122222566778888765 33333 333 55552 2211110
Q ss_pred ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecC
Q 012007 361 GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 361 ~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
-........+....+..+.++....|+.|..+.+.
T Consensus 228 i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 228 IAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 01111223334444445677777777777777654
No 342
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.85 E-value=0.032 Score=53.82 Aligned_cols=107 Identities=9% Similarity=0.086 Sum_probs=74.7
Q ss_pred eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEec
Q 012007 315 CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 315 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~ 394 (473)
............|.+++++|+...|+.|+.||.|.+||...+.... ....-.....++.|+|.++++|+..|.+.+||+
T Consensus 250 rvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 250 RVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred EEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 3344455778899999999999999999999999999987653321 111222344667778999999999999999998
Q ss_pred CCCCc----------ee---EEEEecCCCCceeEEEEecCC
Q 012007 395 EESGA----------HS---CLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 395 ~~~~~----------~~---~~~~~~~h~~~V~~l~~~~~~ 422 (473)
.-... .. .+..+-.+...+..+.|.+..
T Consensus 329 ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 329 ALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP 369 (545)
T ss_pred ecCccceeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence 64210 01 111222345567888998543
No 343
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.82 E-value=0.021 Score=51.98 Aligned_cols=225 Identities=12% Similarity=0.154 Sum_probs=121.6
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEE
Q 012007 171 GDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLL 250 (473)
Q Consensus 171 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 250 (473)
..++.|+.|..+| |.++++......... .+...|..+...++-+.|
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i---------------------------------~~~~~I~ql~vl~~~~~l 50 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI---------------------------------LKLSSITQLSVLPELNLL 50 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE---------------------------------eecceEEEEEEecccCEE
Confidence 3567999999998 889988222111111 133448889999988877
Q ss_pred EEEeCCCCEEEEEcCCCeeeEEe--------------ecCCCceeEEE--EcCC-CEEEEEeCCCcEEEEeCcccCCCcc
Q 012007 251 YSGSWDKTLKVWRISDCKCLESI--------------NAHDDAINSVV--AGFD-SLVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 251 ~s~s~dg~v~vwd~~~~~~~~~~--------------~~~~~~v~~l~--~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
++-+ |+.+.++++......... ......+...+ -... ...+.......|.+|..........
T Consensus 51 lvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~ 129 (275)
T PF00780_consen 51 LVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS 129 (275)
T ss_pred EEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc
Confidence 7776 599999998764433311 01122333333 1122 2444555566999998764211110
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec------------CcceEEEEEec-CCEE
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG------------HKMAVLCLAAA-GNLV 380 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~-~~~l 380 (473)
..... ..-...+..++|. ++.++.|..++ ..+.|+.++... ..... ...++..+..+ +.+|
T Consensus 130 -~~~ke-~~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L 203 (275)
T PF00780_consen 130 -KLLKE-ISLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFL 203 (275)
T ss_pred -ceeEE-EEcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCce-EEeCccCCcchhhhcccCCCceEEEEeCCceEE
Confidence 11122 2234778889998 55677776544 777888753221 11110 11223333333 5555
Q ss_pred EEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 381 FSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 381 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
++- |..-.+.|..........-.+ .....++++... +|+..+. +.|.||++.+++.
T Consensus 204 l~~--~~~g~fv~~~G~~~r~~~i~W---~~~p~~~~~~~p---------------yli~~~~-~~iEV~~~~~~~l 259 (275)
T PF00780_consen 204 LCY--DNIGVFVNKNGEPSRKSTIQW---SSAPQSVAYSSP---------------YLIAFSS-NSIEVRSLETGEL 259 (275)
T ss_pred EEe--cceEEEEcCCCCcCcccEEEc---CCchhEEEEECC---------------EEEEECC-CEEEEEECcCCcE
Confidence 543 333444454431111111222 234556666443 5666655 4599999999853
No 344
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=4.3e-05 Score=64.08 Aligned_cols=142 Identities=20% Similarity=0.187 Sum_probs=89.4
Q ss_pred EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcce
Q 012007 290 LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMA 369 (473)
Q Consensus 290 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (473)
.+..-+.||.|+-++++.... .......+... ...-.-+..+++|+.+|.|.+|.....-........-...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~-----s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~ 103 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKE-----SCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES 103 (238)
T ss_pred hhccccCCcccccchhhhhhh-----hhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhccccc
Confidence 455667888888888763211 11111111111 1122234678999999999999876322222222223334
Q ss_pred EEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC-CceeEEEEecCCCCCcccccCCCccEEEEEe--eC
Q 012007 370 VLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHT-GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG--SL 443 (473)
Q Consensus 370 v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~--s~ 443 (473)
+.+.-|. +.+..+++.||.|+.|++.- .+.+.....|+ .++..+.....++ +++.+ |.
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p---~k~~g~~g~h~~~~~e~~ivv~sd~-------------~i~~a~~S~ 167 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKP---NKVLGYVGQHNFESGEELIVVGSDE-------------FLKIADTSH 167 (238)
T ss_pred ceeccccccccceeEEeccCCceeeecccc---CceeeeeccccCCCcceeEEecCCc-------------eEEeecccc
Confidence 4454443 56889999999999999887 56666666676 5666666666655 67777 88
Q ss_pred CCcEEEEEcCCC
Q 012007 444 DKSVKVWRVSEH 455 (473)
Q Consensus 444 Dg~v~iW~i~~~ 455 (473)
|..++.|++...
T Consensus 168 d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 168 DRVLKKWNVEKI 179 (238)
T ss_pred chhhhhcchhhh
Confidence 888999988754
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.75 E-value=0.0034 Score=61.76 Aligned_cols=152 Identities=11% Similarity=0.052 Sum_probs=87.4
Q ss_pred CeeEEEEcCCCCEEEEEeCCC----CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 237 AVSCLSLNAEQGLLYSGSWDK----TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg----~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
...-+.++++|+++++.+.+. ++...+..+...+..+... .+. .+.+++ +... .++.|.+.|.+...+.
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~ie--a~vkdGK~~~V--~gn~V~VID~~t~~~~ 309 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RIE--EAVKAGKFKTI--GGSKVPVVDGRKAANA 309 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HHH--HhhhCCCEEEE--CCCEEEEEECCccccC
Confidence 344578899999998886422 2333332222211111110 000 122344 3332 3678999998741100
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCCccc------------ccceeecCcceEEEEEecCC
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEKHLS------------HGGVLRGHKMAVLCLAAAGN 378 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------------~~~~~~~~~~~v~~~~~~~~ 378 (473)
.. .......-......+.++|||+++++++ .+.+|.|+|+.+... ......+-.-..+.|..+|+
T Consensus 310 -~~-~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ 387 (635)
T PRK02888 310 -GS-ALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN 387 (635)
T ss_pred -Cc-ceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC
Confidence 11 1222223345678899999999877665 488999999986432 11111222223466666788
Q ss_pred EEEEEeCCCcEEEEecCC
Q 012007 379 LVFSGSADRNICLWRREE 396 (473)
Q Consensus 379 ~l~s~~~dg~i~iwd~~~ 396 (473)
...+-.-|..|..|++..
T Consensus 388 aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 388 AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeEeecceeEEEehHH
Confidence 888888999999999875
No 346
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.72 E-value=0.022 Score=56.51 Aligned_cols=238 Identities=16% Similarity=0.126 Sum_probs=121.2
Q ss_pred CEEEEeeCCCcEEEeeCCc--cccccccCcc-----cE-EEEEEeCCCCEEEEEe---------CCCeEEEEeCCCCCee
Q 012007 134 DLLYTGSDSKNIRVWKNLK--EFSGFKSNSG-----LV-KAIIISGDSNKIFTGH---------QDGKIRIWKVSRKNAS 196 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~-----~V-~~l~~s~~~~~l~s~~---------~dg~i~vwd~~~~~~~ 196 (473)
..++.++.+|.|.-+|... .+-.+..... .+ ....+. + ..++.++ .+|.|...|..+++..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 6777777788888887542 2222211111 01 111222 2 3455543 4678999999998876
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeecc-CCe-eEEEEcCCCCEEEEEeCCC-----------------
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY-DAV-SCLSLNAEQGLLYSGSWDK----------------- 257 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v-~~l~~~~~~~~l~s~s~dg----------------- 257 (473)
-........... ... ... ......+. ..+ ...++.+.+..++.++.++
T Consensus 189 W~~~~~~~~~~~--~~~-~~~----------~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~ 255 (488)
T cd00216 189 WRFYTTEPDPNA--FPT-WGP----------DRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYT 255 (488)
T ss_pred eEeeccCCCcCC--CCC-CCC----------CcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCce
Confidence 655442110000 000 000 00000010 111 1244555567777777655
Q ss_pred -CEEEEEcCCCeeeEEeecCCCcee--------EEE-Ec-CCC----EEEEEeCCCcEEEEeCcccCCCcceeeeeeecc
Q 012007 258 -TLKVWRISDCKCLESINAHDDAIN--------SVV-AG-FDS----LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK 322 (473)
Q Consensus 258 -~v~vwd~~~~~~~~~~~~~~~~v~--------~l~-~~-~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 322 (473)
.|.-+|..+|+.+..++.-..... .+. .. -++ .++.++.+|.+...|.++++..-.... .
T Consensus 256 ~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~--~--- 330 (488)
T cd00216 256 DSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE--V--- 330 (488)
T ss_pred eeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe--e---
Confidence 799999999999887653211111 111 00 112 578888999999999886542111110 0
Q ss_pred CCccEEEEEEccCCCEEEEe------------------CCCCcEEEEecCCcccccceeec-C--------cceEEEEEe
Q 012007 323 HENAVTALAVNQESAVVYCG------------------SSDGLVNFWECEKHLSHGGVLRG-H--------KMAVLCLAA 375 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~-~--------~~~v~~~~~ 375 (473)
...++.+| ..++.+ ..+|.|.-.|+.+++..-....+ + ......+..
T Consensus 331 ----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~ 404 (488)
T cd00216 331 ----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT 404 (488)
T ss_pred ----ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe
Confidence 01122233 222221 23566777777665433222111 0 001122345
Q ss_pred cCCEEEEEeCCCcEEEEecCCC
Q 012007 376 AGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 376 ~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
.+.+|++++.||.|+.+|..++
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCC
Confidence 6789999999999999999984
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.66 E-value=0.0093 Score=57.59 Aligned_cols=223 Identities=9% Similarity=0.083 Sum_probs=109.8
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
..-....+.++|+|++++.+ .||.-.|+........ ..+.-.
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k-------------------------------------~~G~g~ 72 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNK-------------------------------------AFGSGL 72 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEE-------------------------------------EEEE-S
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccc-------------------------------------ccCcee
Confidence 34457899999999999984 5667777773322211 223345
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
...|.+. +.+|+-...++|.|+.--+.+....++.. ..+..|.. |.++....++.|.+||+..+ ..+..
T Consensus 73 ~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~~i~~yDw~~~------~~i~~ 141 (443)
T PF04053_consen 73 SFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSDFICFYDWETG------KLIRR 141 (443)
T ss_dssp EEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETTEEEEE-TTT--------EEEE
T ss_pred EEEEecC-ccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCCCEEEEEhhHc------ceeeE
Confidence 6788884 45777777889999743232322234322 23444443 54444445558999999732 22333
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc---------cc-ccceeecCcceEEEEEecCCEEEEEeCCCcE
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH---------LS-HGGVLRGHKMAVLCLAAAGNLVFSGSADRNI 389 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~-~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i 389 (473)
.. -.+|..+.|++++.+++..+.+ .+.|++.... .. .......-...|.+..|++..++-.+.. .|
T Consensus 142 i~--v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~l 217 (443)
T PF04053_consen 142 ID--VSAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HL 217 (443)
T ss_dssp ES--S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EE
T ss_pred Ee--cCCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eE
Confidence 32 2248999999999999988765 6777765432 00 1111211134555666666644444433 55
Q ss_pred EEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 390 CLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 390 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+. +.. +....+..+ ..++.=+...+... .++....|+.|..+.+..
T Consensus 218 kY--l~~-Ge~~~i~~l---d~~~yllgy~~~~~-------------~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 218 KY--LVN-GETGIIAHL---DKPLYLLGYLPKEN-------------RLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EE--EET-TEEEEEEE----SS--EEEEEETTTT-------------EEEEE-TT--EEEEE--H
T ss_pred EE--EEc-CCcceEEEc---CCceEEEEEEccCC-------------EEEEEECCCCEEEEEECH
Confidence 55 222 112333333 34566677777555 688888999999888763
No 348
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.62 E-value=0.031 Score=51.22 Aligned_cols=210 Identities=8% Similarity=0.022 Sum_probs=114.3
Q ss_pred EEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCee-eEEeeccccccceeEee
Q 012007 135 LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNAS-VHKRVGSLPTFKDYVKS 213 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~ 213 (473)
++.+--..+.|.-|+..........+.+.+.++..-..+..|+++... +.+++.+.+... ........
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~--------- 107 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHG--VRLLDPDTGGKITLLAEPEDG--------- 107 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccc--cEEEeccCCceeEEeccccCC---------
Confidence 455555667777777653333333344445666555555566665443 566777555432 11111000
Q ss_pred cCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC---------CCCEEEEEcC-CCeeeEEeecCCCceeEE
Q 012007 214 SVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW---------DKTLKVWRIS-DCKCLESINAHDDAINSV 283 (473)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~---------dg~v~vwd~~-~~~~~~~~~~~~~~v~~l 283 (473)
.-....+.+...|+|.+-++... ...=.+|.+. .+..++.+..+-..-+.|
T Consensus 108 -------------------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGl 168 (307)
T COG3386 108 -------------------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGL 168 (307)
T ss_pred -------------------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCce
Confidence 01234456677777765444332 0112455544 566666666666777899
Q ss_pred EEcCCC-EEE-EEeCCCcEEEEeCcc-cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-cEEEEecCCcccc
Q 012007 284 VAGFDS-LVF-TGSADGTVKVWRREL-QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-LVNFWECEKHLSH 359 (473)
Q Consensus 284 ~~~~~~-~l~-s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~ 359 (473)
+|+|++ .++ +=+..+.|.-|++.. .................+..-.++...+|.+.+++..+| .|.+|+.. +...
T Consensus 169 a~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~ 247 (307)
T COG3386 169 AFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL 247 (307)
T ss_pred EECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE
Confidence 999999 444 444558888887762 111111121222323456666788888888776555554 89999988 4444
Q ss_pred cceeecCcceEEEEEec
Q 012007 360 GGVLRGHKMAVLCLAAA 376 (473)
Q Consensus 360 ~~~~~~~~~~v~~~~~~ 376 (473)
...... ...+.+.++-
T Consensus 248 ~~i~lP-~~~~t~~~Fg 263 (307)
T COG3386 248 GEIKLP-VKRPTNPAFG 263 (307)
T ss_pred EEEECC-CCCCccceEe
Confidence 333322 2344444443
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.62 E-value=0.073 Score=51.37 Aligned_cols=180 Identities=8% Similarity=0.005 Sum_probs=89.6
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe------eeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccC
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK------CLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~------~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
+.|-++.|..+. .|++...||.++++|+.... .+.........+....+...|.++. ..++.+.+.+-....
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL-t~~~~~~~v~n~~~~ 158 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL-TGNNRFYVVNNIDEP 158 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEE-CCCCeEEEEeCcccc
Confidence 678899998864 55566789999999986322 1111111122222333444564443 334444444221110
Q ss_pred CCcce--e-eeeee--ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEe
Q 012007 310 KGTKH--C-LAQVL--LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 310 ~~~~~--~-~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 384 (473)
..... . +.... ..+........++.+....+....++.+.+.+-..... ........-++++|++++||.-.
T Consensus 159 ~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t 235 (410)
T PF04841_consen 159 VKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFT 235 (410)
T ss_pred chhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEE
Confidence 00000 0 00000 00111101123444555555555566676554332111 11112334467788999999999
Q ss_pred CCCcEEEEecCCCCceeEEEEecCC-CCceeEEEEecCCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGH-TGPVKCLAVEEDRD 423 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~ 423 (473)
.+|.+.+...+- .+.+..+.-. ......+.|.-+..
T Consensus 236 ~~g~l~v~ssDf---~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 236 DSGNLWVVSSDF---SEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred CCCCEEEEECcc---cceeEEeecCcCCCCcEEEEECCCc
Confidence 999999887654 2333333322 34567788877653
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.62 E-value=0.059 Score=50.33 Aligned_cols=188 Identities=13% Similarity=0.152 Sum_probs=104.0
Q ss_pred CCEEEEEeC----------CCCEEEEEcCCC----eeeEEe--ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCC
Q 012007 247 QGLLYSGSW----------DKTLKVWRISDC----KCLESI--NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 247 ~~~l~s~s~----------dg~v~vwd~~~~----~~~~~~--~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~ 310 (473)
..+|++|+. .|.|.++++... ..+..+ ....++|.+++.- ++.|++ +.++.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~-~~g~~l~v~~l~~~~- 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVV-AVGNKLYVYDLDNSK- 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEE-EETTEEEEEEEETTS-
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEE-eecCEEEEEEccCcc-
Confidence 467777753 288999999884 122222 2347889999866 445443 345899999987432
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc-ccccce-eecCcceEEEEEe--cCCEEEEEeCC
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH-LSHGGV-LRGHKMAVLCLAA--AGNLVFSGSAD 386 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~-~~~~~~~v~~~~~--~~~~l~s~~~d 386 (473)
.............++++... ++++++|.....+.++..+.. ...... .......+++..+ +++.++++..+
T Consensus 119 ---~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 119 ---TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp ---SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred ---cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence 11222222233466666665 558999988888888755431 111111 1122344555543 56799999999
Q ss_pred CcEEEEecCCC-----C---ceeEEEEecCCCCceeEE---EEecC--CCCCcccccCCCccEEEEEeeCCCcEEEE
Q 012007 387 RNICLWRREES-----G---AHSCLAVLTGHTGPVKCL---AVEED--RDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450 (473)
Q Consensus 387 g~i~iwd~~~~-----~---~~~~~~~~~~h~~~V~~l---~~~~~--~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW 450 (473)
|.+.++..... . .......+. ....|+++ .+.|. .. .......++-++.+|.|.+.
T Consensus 194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~-------~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 194 GNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSS-------ESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS--------TTEEEEEEEEETTS-EEEE
T ss_pred CeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCC-------cccccceEEEEecCCEEEEE
Confidence 99999988631 1 122233332 23567777 55552 11 00012357788889998843
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.62 E-value=0.03 Score=49.48 Aligned_cols=203 Identities=8% Similarity=0.091 Sum_probs=103.6
Q ss_pred cccCcccEEEEEEeCCCCE-EEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 157 FKSNSGLVKAIIISGDSNK-IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
+.+-...+..|+|.|+.+. +++....+.|...+.+ ++......+. -.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~-------------------------------g~ 64 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD-------------------------------GF 64 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S-------------------------------S-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC-------------------------------CC
Confidence 3344456999999998664 5555667888777864 4544443332 23
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe------eeEEee-----cCCCceeEEEEcCCC-EEEEEeCCCcEEEE
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK------CLESIN-----AHDDAINSVVAGFDS-LVFTGSADGTVKVW 303 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~------~~~~~~-----~~~~~v~~l~~~~~~-~l~s~~~dg~i~vw 303 (473)
+....|++..++.++++--.++.+.++++.... ....+. .+...+-.++|.+.+ .|+++-...-..+|
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~ 144 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLY 144 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhE
Confidence 456678887777666666568899999884321 112221 244568999998875 66677777777777
Q ss_pred eCcccCCCcceee--e---eeeccCCccEEEEEEccC-CCEEEEeCCCCcEEEEecCCcccccceeec---------Ccc
Q 012007 304 RRELQGKGTKHCL--A---QVLLKHENAVTALAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVLRG---------HKM 368 (473)
Q Consensus 304 d~~~~~~~~~~~~--~---~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~ 368 (473)
.+........... . .........+.+++++|. +.+++.+..+..|.++|..........+.. ...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~Qp 224 (248)
T PF06977_consen 145 EVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQP 224 (248)
T ss_dssp EEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SE
T ss_pred EEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCc
Confidence 7653110000000 0 001223445789999995 567777778888888885543221112221 123
Q ss_pred eEEEEEecCCEEEEEeCCCcEEEE
Q 012007 369 AVLCLAAAGNLVFSGSADRNICLW 392 (473)
Q Consensus 369 ~v~~~~~~~~~l~s~~~dg~i~iw 392 (473)
.-.++.++|++.+++ +-+..++|
T Consensus 225 EGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 225 EGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEEE-TT--EEEEE-TTTEEEEE
T ss_pred cEEEECCCCCEEEEc-CCceEEEe
Confidence 346677777555544 44444443
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.046 Score=52.31 Aligned_cols=223 Identities=13% Similarity=0.124 Sum_probs=139.0
Q ss_pred EEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 164 VKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 164 V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
-..+++++.++.++.. ..++.|.+.|............+ .....++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG---------------------------------~~P~~~~ 122 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG---------------------------------LGPVGLA 122 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec---------------------------------cCCceEE
Confidence 4577888888755544 44588999997666544433322 1456789
Q ss_pred EcCCCCEEEEEeC---CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEE-EEeCCCcEEEEeCcccCCCcceeee
Q 012007 243 LNAEQGLLYSGSW---DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 243 ~~~~~~~l~s~s~---dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~-s~~~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
++++++.++++.. ++++.+.|-.+.+.+.....-..+ ..+++.|++ .++ +-..++.|.+.|........ ...
T Consensus 123 ~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~ 199 (381)
T COG3391 123 VDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSV 199 (381)
T ss_pred ECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--ccc
Confidence 9999988888876 688999999999888886654445 888999998 344 44478999999965322100 000
Q ss_pred eeeccCCccEEEEEEccCCCEEEEeCCC---CcEEEEecCCcccccceeecC--cceEEEEEecCCEEEEEeCC-CcEEE
Q 012007 318 QVLLKHENAVTALAVNQESAVVYCGSSD---GLVNFWECEKHLSHGGVLRGH--KMAVLCLAAAGNLVFSGSAD-RNICL 391 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~s~~~d-g~i~i 391 (473)
.....-......+.+++++.++++.... +.+...|..+........... ...-..+.|+|..+.+.... +.+.+
T Consensus 200 ~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 200 GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 1112223344678999999876665443 588888887754433211111 22345677889988887444 78888
Q ss_pred EecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 392 WRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 392 wd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
.|..+............-...+..+++.+..
T Consensus 280 id~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 280 IDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EeCCCCceeeeecccccccccceeccceeec
Confidence 8887732222222222222235555555543
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.59 E-value=0.045 Score=51.86 Aligned_cols=52 Identities=8% Similarity=0.065 Sum_probs=37.2
Q ss_pred CCcEEEeeCCcc-ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q 012007 142 SKNIRVWKNLKE-FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 142 dg~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
.+.+.|||+... ...+......+....|+|+|++++-.. ++.|.+++..++.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence 356778887643 333333367899999999999998875 6789999987774
No 354
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0017 Score=61.18 Aligned_cols=139 Identities=22% Similarity=0.238 Sum_probs=95.1
Q ss_pred EEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--------EEEEEeCCCcEEEEeCcccCCCcceeeeeee
Q 012007 249 LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--------LVFTGSADGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 249 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
+|.++..-..|+-.|++.|+.+.+++.+.+ |+-+.+.|+. .-+.|-.|..|.-||.+..++. .+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~----kl~~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN----KLAVV 422 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc----eeeee
Confidence 344555566788999999999999998877 7777777764 3456778899999999865432 11112
Q ss_pred ccC----CccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE--EEEecCCEEEEEeCCCcEEEEec
Q 012007 321 LKH----ENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL--CLAAAGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 321 ~~~----~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~~~dg~i~iwd~ 394 (473)
..| .....|++-..+| ++++|+.+|.|++||- .+......+.+-..+|. .++.+|++|++.+ +.++.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 222 2334555555444 7889999999999997 44445556666666664 4567899888776 556777665
Q ss_pred C
Q 012007 395 E 395 (473)
Q Consensus 395 ~ 395 (473)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 4
No 355
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.58 E-value=0.088 Score=51.21 Aligned_cols=247 Identities=11% Similarity=0.120 Sum_probs=126.5
Q ss_pred ccEEEEEEeCCCCEEEEE-eCCC----eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 162 GLVKAIIISGDSNKIFTG-HQDG----KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
-.+..+.++|+|++||-+ +..| .|++.|+.+++...... ...
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i---------------------------------~~~ 170 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI---------------------------------ENP 170 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE---------------------------------EEE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc---------------------------------ccc
Confidence 345578899999988855 3444 49999999985433221 111
Q ss_pred CeeEEEEcCCCCEEEEEeCCC-----------CEEEEEcCCCeee--EEeecCCCc--eeEEEEcCCC-EEE-EEeCC--
Q 012007 237 AVSCLSLNAEQGLLYSGSWDK-----------TLKVWRISDCKCL--ESINAHDDA--INSVVAGFDS-LVF-TGSAD-- 297 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg-----------~v~vwd~~~~~~~--~~~~~~~~~--v~~l~~~~~~-~l~-s~~~d-- 297 (473)
....+.|.++++.|+-...+. .|+.|.+.+...- ..+...... ...+..++++ +++ .....
T Consensus 171 ~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~ 250 (414)
T PF02897_consen 171 KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS 250 (414)
T ss_dssp ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS
T ss_pred ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc
Confidence 122389999988766655333 3788888765332 333333332 5567778887 333 33332
Q ss_pred -CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC---CCCcEEEEecCCccc--ccceeecCcc--e
Q 012007 298 -GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS---SDGLVNFWECEKHLS--HGGVLRGHKM--A 369 (473)
Q Consensus 298 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~~~--~ 369 (473)
..+.+.++.... ........+......+....-+.++.+++... .++.|...++..... ....+..+.. .
T Consensus 251 ~s~v~~~d~~~~~--~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~ 328 (414)
T PF02897_consen 251 ESEVYLLDLDDGG--SPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS 328 (414)
T ss_dssp EEEEEEEECCCTT--TSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE
T ss_pred CCeEEEEeccccC--CCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee
Confidence 346666765321 00111222233333343333333444444432 245677777776442 1224444443 5
Q ss_pred EEEEEecCCEEEEEe-CCC--cEEEEecC-CCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC--
Q 012007 370 VLCLAAAGNLVFSGS-ADR--NICLWRRE-ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL-- 443 (473)
Q Consensus 370 v~~~~~~~~~l~s~~-~dg--~i~iwd~~-~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~-- 443 (473)
+..+...+++|+... .++ .|+++++. + .........-.+.|..+...++... .+|...|.
T Consensus 329 l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~~~~~~~~p~~g~v~~~~~~~~~~~-----------~~~~~ss~~~ 394 (414)
T PF02897_consen 329 LEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---KESREIPLPEAGSVSGVSGDFDSDE-----------LRFSYSSFTT 394 (414)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEETT-T---EEEEEEESSSSSEEEEEES-TT-SE-----------EEEEEEETTE
T ss_pred EEEEEEECCEEEEEEEECCccEEEEEECCCC---cEEeeecCCcceEEeccCCCCCCCE-----------EEEEEeCCCC
Confidence 667777666655544 443 58888888 4 2333332223445666555554432 23333332
Q ss_pred CCcEEEEEcCCCCC
Q 012007 444 DKSVKVWRVSEHAP 457 (473)
Q Consensus 444 Dg~v~iW~i~~~~~ 457 (473)
-++|..||+.+++.
T Consensus 395 P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 395 PPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEEETTTTCE
T ss_pred CCEEEEEECCCCCE
Confidence 35677788777653
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.55 E-value=0.011 Score=58.33 Aligned_cols=180 Identities=9% Similarity=0.049 Sum_probs=108.9
Q ss_pred EEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCC----CcEEEEeCcccCCCccee
Q 012007 242 SLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSAD----GTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 242 ~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~d----g~i~vwd~~~~~~~~~~~ 315 (473)
=+.+||+.+... -..+.+.+.|.++.+....+.... ....+.+++++ ++++.+.+ ..+..-+..
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~--------- 268 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA--------- 268 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccc---------
Confidence 355677655433 345668888988877777665433 33556777777 55555422 122222221
Q ss_pred eeeeeccCCccEEEE------EEccCCCEEEEeCCCCcEEEEecCC----c-ccccceeecCcceEEEEEecCCEEEEEe
Q 012007 316 LAQVLLKHENAVTAL------AVNQESAVVYCGSSDGLVNFWECEK----H-LSHGGVLRGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l------~~~~~~~~l~~~~~dg~i~iwd~~~----~-~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 384 (473)
....+..+ ++.++|++...+ ++.|.+.|.++ . .....+..+....-+.++|||+++++++
T Consensus 269 -------e~d~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVan 339 (635)
T PRK02888 269 -------ERDWVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANG 339 (635)
T ss_pred -------cCceEEEEchHHHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeC
Confidence 01111111 334577777663 67899999887 2 2333334444445578899999877765
Q ss_pred -CCCcEEEEecCCCCc---------eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 385 -ADRNICLWRREESGA---------HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 385 -~dg~i~iwd~~~~~~---------~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.+.+|.|.|+.+... ...+....- ...-...+|.+++. ...|--.|..|-.|++..
T Consensus 340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~-------------aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGN-------------AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCC-------------EEEeEeecceeEEEehHH
Confidence 488999999987321 111222222 22235678888876 788888899999999986
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.51 E-value=0.016 Score=43.36 Aligned_cols=99 Identities=21% Similarity=0.287 Sum_probs=66.6
Q ss_pred EEEEEEeC---CC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 164 VKAIIISG---DS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 164 V~~l~~s~---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
|++|++.. || +.|++|+.|..||+|+-+.- .... ...+.|.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--~~Ei---------------------------------~e~~~v~ 46 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--VAEI---------------------------------TETDKVT 46 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--EEEE---------------------------------ecccceE
Confidence 66777654 33 68999999999999985421 1111 2556788
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEc-CC--C--EEEEEeCCCcEE
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG-FD--S--LVFTGSADGTVK 301 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~-~~--~--~l~s~~~dg~i~ 301 (473)
+|.-... ..++-+..+|+|-+|+- .+.+..++... .+.++.+. .+ + .|++|-.+|.|-
T Consensus 47 ~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 47 SLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 8877665 67888999999999975 33444454333 35666543 33 3 788998888874
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.50 E-value=0.00028 Score=41.63 Aligned_cols=38 Identities=39% Similarity=0.642 Sum_probs=33.3
Q ss_pred eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 401 SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 401 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
.++..+..|...|.++.|.+... ++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-------------YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-------------EEEEecCCCeEEEcC
Confidence 45666778899999999999887 899999999999996
No 359
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.47 E-value=0.058 Score=46.61 Aligned_cols=100 Identities=13% Similarity=0.199 Sum_probs=70.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
..+++.|+..+.+..-|..+++....... ...|.+-+.- -|++++.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il---------------------------------g~RiE~sa~v-vgdfVV~ 68 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL---------------------------------GVRIECSAIV-VGDFVVL 68 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh---------------------------------CceeeeeeEE-ECCEEEE
Confidence 35778888888888888888876544332 2223222222 4678999
Q ss_pred EeCCCCEEEEEcCCCeeeEEeecCCC-ceeEEEEcCC-CEEEEEeCCCcEEEEeCcc
Q 012007 253 GSWDKTLKVWRISDCKCLESINAHDD-AINSVVAGFD-SLVFTGSADGTVKVWRREL 307 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~~~~~-~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~ 307 (473)
|...|.+++.+.++|.....+..-+. .+.. ...++ +++..|+.|+..+..|.+.
T Consensus 69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a-~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRA-QCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred EEccCcEEEEEecchhheeeeeehhhhccce-EEcCCCceEEEecCCCcEEEecccc
Confidence 99999999999999988777664332 2222 23444 5999999999999999873
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.096 Score=48.04 Aligned_cols=209 Identities=12% Similarity=0.093 Sum_probs=116.4
Q ss_pred EEeCCCCE-EEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC
Q 012007 168 IISGDSNK-IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE 246 (473)
Q Consensus 168 ~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 246 (473)
.|.++... +.+--..+.|.-|+..+++..... +.+.+.++..-..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~----------------------------------~p~~~~~~~~~d~ 76 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP----------------------------------SPGGFSSGALIDA 76 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE----------------------------------CCCCcccceeecC
Confidence 35555553 444445677888887755432221 3344455555455
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeeeEEeec-----CCCceeEEEEcCCCEEEEEeCCC----------cEEEEeCcccCCC
Q 012007 247 QGLLYSGSWDKTLKVWRISDCKCLESINA-----HDDAINSVVAGFDSLVFTGSADG----------TVKVWRRELQGKG 311 (473)
Q Consensus 247 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-----~~~~v~~l~~~~~~~l~s~~~dg----------~i~vwd~~~~~~~ 311 (473)
+..|+++. .-+.+++..++..+..+.. .....+.+...+++.+..+.... .-.+|.+...
T Consensus 77 ~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~--- 151 (307)
T COG3386 77 GGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD--- 151 (307)
T ss_pred CCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC---
Confidence 55565554 3467777766555333221 22456677888888666665541 1134433311
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CCcEEEEecCC--ccccc---ceee-cCcce--EEEEEecCCEEEE
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DGLVNFWECEK--HLSHG---GVLR-GHKMA--VLCLAAAGNLVFS 382 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~~--~~~~~---~~~~-~~~~~--v~~~~~~~~~l~s 382 (473)
.........+-..-+.|+|+||++.|+.... .+.|.-|++.. ..... .... ...+. -.++.-+|.+.++
T Consensus 152 --g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 152 --GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred --CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEe
Confidence 1122233333445578999999988777755 47888887752 11110 0111 11111 2555666777765
Q ss_pred EeCCC-cEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 383 GSADR-NICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 383 ~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
+..+| .|.+|+.+. +++..+.-....+++++|--.
T Consensus 230 a~~~g~~v~~~~pdG----~l~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 230 AVWGGGRVVRFNPDG----KLLGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred cccCCceEEEECCCC----cEEEEEECCCCCCccceEeCC
Confidence 55554 899998873 455555555577888998764
No 361
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.40 E-value=0.027 Score=53.37 Aligned_cols=238 Identities=12% Similarity=0.056 Sum_probs=119.5
Q ss_pred eCCCCEEEEEe---------CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 170 SGDSNKIFTGH---------QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 170 s~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
|||+++++... ..+.+.|||+.+++...... ....+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~---------------------------------~~~~~~~ 47 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP---------------------------------PPPKLQD 47 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS----------------------------------EETTBSE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC---------------------------------Ccccccc
Confidence 57777776642 23568888988865332221 2456788
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecC-----------------CCceeEEEEcCCC-EEE-EEeCCCcEE
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH-----------------DDAINSVVAGFDS-LVF-TGSADGTVK 301 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-----------------~~~v~~l~~~~~~-~l~-s~~~dg~i~ 301 (473)
..|+|+|+.++-.. ++.|.++++.+++..+.-... -+.-..+.|+|++ .|+ .--.+..|+
T Consensus 48 ~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~ 126 (353)
T PF00930_consen 48 AKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVP 126 (353)
T ss_dssp EEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-
T ss_pred ceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCc
Confidence 99999999998887 578999998777544322111 1123567899987 333 333344444
Q ss_pred EEeCcccCCCc-------------------------------ceeeee---eeccCCccEEEEEEccCCCEEEEe--CCC
Q 012007 302 VWRRELQGKGT-------------------------------KHCLAQ---VLLKHENAVTALAVNQESAVVYCG--SSD 345 (473)
Q Consensus 302 vwd~~~~~~~~-------------------------------~~~~~~---~~~~~~~~v~~l~~~~~~~~l~~~--~~d 345 (473)
.+.+-...... ...... ........+..+.|.+++..|+.. ..+
T Consensus 127 ~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~ 206 (353)
T PF00930_consen 127 EYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD 206 (353)
T ss_dssp EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT
T ss_pred eEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccC
Confidence 33321110000 000000 012234557888899888734332 222
Q ss_pred C---cEEEEecCCcccccceeecCcce-----EEEEE-ec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeE
Q 012007 346 G---LVNFWECEKHLSHGGVLRGHKMA-----VLCLA-AA-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKC 415 (473)
Q Consensus 346 g---~i~iwd~~~~~~~~~~~~~~~~~-----v~~~~-~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~ 415 (473)
. .+.++|..++............. ...+. ++ +.+|.....||.-+||-+...+ .....+....-.|+.
T Consensus 207 q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~--~~~~~lT~G~~~V~~ 284 (353)
T PF00930_consen 207 QNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG--GKPRQLTSGDWEVTS 284 (353)
T ss_dssp STEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS--SEEEESS-SSS-EEE
T ss_pred CCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc--cceeccccCceeecc
Confidence 2 35566765533221111111111 23333 34 4566666678766555554321 223355544556755
Q ss_pred -EEEecCCCCCcccccCCCccEEEEEeeCC--CcEEEEEcCCC
Q 012007 416 -LAVEEDRDHDHEYHQKGDQRWTVYSGSLD--KSVKVWRVSEH 455 (473)
Q Consensus 416 -l~~~~~~~~~~~~~~~~~~~~~l~s~s~D--g~v~iW~i~~~ 455 (473)
+.|++++.. +++++..+ +.-.+|.+.-.
T Consensus 285 i~~~d~~~~~------------iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 285 ILGWDEDNNR------------IYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEEECTSSE------------EEEEESSGGTTSBEEEEEETT
T ss_pred cceEcCCCCE------------EEEEecCCCCCceEEEEEEeC
Confidence 667777653 45555543 34555655544
No 362
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.39 E-value=0.00028 Score=41.64 Aligned_cols=35 Identities=26% Similarity=0.598 Sum_probs=28.0
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34456777888888888888888888888888885
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00097 Score=64.12 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=76.2
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCcee-EEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN-SVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~-~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++..|...++ +++|.|+| .++.|-.||+|++.|++.+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~-- 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR-- 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc--
Confidence 4467889999999999999999999999997 888889987777777 99999999 889999999999999985432
Q ss_pred ceeeeeeeccCCccEEEEEEcc
Q 012007 313 KHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
+......-...|.++-|.+
T Consensus 97 ---l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 ---LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ---eeccccccccchheeeccc
Confidence 2232334456677777763
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00092 Score=64.26 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=71.2
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee-
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS- 239 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 239 (473)
.-.|.-+.|+|.-.++|++..+|.|.+..+.-.+ ...... +...++
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR-lwtip~--------------------------------p~~~v~~ 66 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQR-LWTIPI--------------------------------PGENVTA 66 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccce-eEeccC--------------------------------CCCccce
Confidence 4568889999999999999999998887776222 111110 445555
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEcC
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGF 287 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~~ 287 (473)
+++|.|||+.|++|-.||+|++.|++++..+.... .-...|.++.|.+
T Consensus 67 sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 67 SLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 99999999999999999999999999988776632 2455677777753
No 365
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.34 E-value=0.12 Score=47.27 Aligned_cols=254 Identities=12% Similarity=0.113 Sum_probs=132.7
Q ss_pred ceeeeeeecccEEEEEecCCEEEEee----------CCCcEEEeeCCcc--ccc--cc-cCc----ccEEEEEEeCCCCE
Q 012007 115 LIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNLKE--FSG--FK-SNS----GLVKAIIISGDSNK 175 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~g~~l~tg~----------~dg~i~vwd~~~~--~~~--~~-~h~----~~V~~l~~s~~~~~ 175 (473)
+.+.+..--..-..++++++.++++. ..-.|.+||.... ... +. .|. .....++++.|+++
T Consensus 29 ~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~ 108 (342)
T PF06433_consen 29 LLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKF 108 (342)
T ss_dssp EEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSE
T ss_pred EEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcE
Confidence 34444333222345788899888753 2347999996532 111 11 111 12345678888888
Q ss_pred EEEEeC--CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE
Q 012007 176 IFTGHQ--DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG 253 (473)
Q Consensus 176 l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 253 (473)
++.... -..|.|-|+..++........ .+..+--. ...-|.+-
T Consensus 109 ~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----------------------------------GC~~iyP~-~~~~F~~l 153 (342)
T PF06433_consen 109 LYVQNFTPATSVTVVDLAAKKVVGEIDTP----------------------------------GCWLIYPS-GNRGFSML 153 (342)
T ss_dssp EEEEEESSSEEEEEEETTTTEEEEEEEGT----------------------------------SEEEEEEE-ETTEEEEE
T ss_pred EEEEccCCCCeEEEEECCCCceeeeecCC----------------------------------CEEEEEec-CCCceEEE
Confidence 877543 457888898887765433321 11112111 22457778
Q ss_pred eCCCCEEEEEcC-CCeeeEEe----ecCCCce-eEEEEc-CCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec---c-
Q 012007 254 SWDKTLKVWRIS-DCKCLESI----NAHDDAI-NSVVAG-FDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL---K- 322 (473)
Q Consensus 254 s~dg~v~vwd~~-~~~~~~~~----~~~~~~v-~~l~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~- 322 (473)
+.||.+.-..+. .|+..... ....+++ ..-.+. .++.++-.+.+|.|+-.|+...... ......... .
T Consensus 154 C~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~-~~~~~~~~t~~e~~ 232 (342)
T PF06433_consen 154 CGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK-FGKPWSLLTDAEKA 232 (342)
T ss_dssp ETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE-EEEEEESS-HHHHH
T ss_pred ecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc-ccCcccccCccccc
Confidence 889999888886 45544222 1112222 122222 3345666788898888887633210 000000000 0
Q ss_pred ---CCccEEEEEEccCCCEEEEeC--------CCC--cEEEEecCCcccccceeecCcceEEEEEecCC-EEEEE-eCCC
Q 012007 323 ---HENAVTALAVNQESAVVYCGS--------SDG--LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-LVFSG-SADR 387 (473)
Q Consensus 323 ---~~~~v~~l~~~~~~~~l~~~~--------~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~-~~dg 387 (473)
..+.-.-+++++..+.|++.. .|+ .|-++|+.+++........+......++-+.+ +|++. ..++
T Consensus 233 ~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 233 DGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp TTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTT
T ss_pred cCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCC
Confidence 012233477777665555532 122 36677888877666555555554556666543 66554 4689
Q ss_pred cEEEEecCCCCceeEEEEec
Q 012007 388 NICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~ 407 (473)
.+.+||..++ +.+..+.
T Consensus 313 ~l~v~D~~tG---k~~~~~~ 329 (342)
T PF06433_consen 313 TLDVYDAATG---KLVRSIE 329 (342)
T ss_dssp EEEEEETTT-----EEEEE-
T ss_pred eEEEEeCcCC---cEEeehh
Confidence 9999999994 5555544
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.31 E-value=0.0079 Score=61.47 Aligned_cols=99 Identities=12% Similarity=0.161 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEcCCC--eeeEE-e--ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeecc
Q 012007 248 GLLYSGSWDKTLKVWRISDC--KCLES-I--NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK 322 (473)
Q Consensus 248 ~~l~s~s~dg~v~vwd~~~~--~~~~~-~--~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 322 (473)
..-+.|-.+..+..||.+-. +++.. . -.......|++-..+|+|++|+.+|.||+||.. + ......+.+
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g-----~~AKT~lp~ 616 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-G-----KRAKTALPG 616 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-c-----hhhhhcCCC
Confidence 34566777889999999853 22211 1 124456889999999999999999999999942 1 223344556
Q ss_pred CCccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 323 HENAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
-..+|..|..+.||++|++.+ +..|.+++.
T Consensus 617 lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 617 LGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 689999999999999987665 456777764
No 367
>PHA02713 hypothetical protein; Provisional
Probab=97.27 E-value=0.049 Score=54.92 Aligned_cols=188 Identities=7% Similarity=0.063 Sum_probs=96.7
Q ss_pred CCCEEEEEeCC------CCEEEEEcCCCeee--EEeecCCCceeEEEEcCCCEEEEEeCCC-----cEEEEeCcccCCCc
Q 012007 246 EQGLLYSGSWD------KTLKVWRISDCKCL--ESINAHDDAINSVVAGFDSLVFTGSADG-----TVKVWRRELQGKGT 312 (473)
Q Consensus 246 ~~~~l~s~s~d------g~v~vwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~ 312 (473)
++.+.+.|+.+ ..+..||..+..-. ..+...... .+++...+...+.|+.++ .+..||....
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~---- 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-FSLAVIDDTIYAIGGQNGTNVERTIECYTMGDD---- 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-eeEEEECCEEEEECCcCCCCCCceEEEEECCCC----
Confidence 55666777753 34778888765432 112111111 123333344566676654 3778887632
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-----------------------cEEEEecCCccc-ccceeecCcc
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-----------------------LVNFWECEKHLS-HGGVLRGHKM 368 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----------------------~i~iwd~~~~~~-~~~~~~~~~~ 368 (473)
.+.....+.........+++ ++.+.+.|+.++ .+..||.++..- ....+.....
T Consensus 378 ~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~ 455 (557)
T PHA02713 378 KWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI 455 (557)
T ss_pred eEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence 22222222221222222222 577777777553 477788765321 1111111111
Q ss_pred eEEEEEecCCEEEEEeCC------CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 369 AVLCLAAAGNLVFSGSAD------RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 369 ~v~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
.......++++.+.|+.+ ..+..||..+.+.+..+..+.........+++ ++. +.+.||
T Consensus 456 ~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~-------------iyv~Gg 520 (557)
T PHA02713 456 RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNT-------------IMMLHC 520 (557)
T ss_pred cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCE-------------EEEEee
Confidence 222345667777777754 24678888762246666655544333333333 333 888999
Q ss_pred CCC--cEEEEEcCCC
Q 012007 443 LDK--SVKVWRVSEH 455 (473)
Q Consensus 443 ~Dg--~v~iW~i~~~ 455 (473)
.|| .+..||+.+.
T Consensus 521 ~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 521 YESYMLQDTFNVYTY 535 (557)
T ss_pred ecceeehhhcCcccc
Confidence 888 6777776654
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0029 Score=64.76 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=62.2
Q ss_pred ecccEEEEEecCCEEEEeeCCCcEEEeeCCcccc---ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFS---GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 122 h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~~~~~---~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
-.+.+.+.+.-+.+++.|+..|.|-..|....+. .-..-.++|++++|+.+|..++.|-.+|.|.+||+..++....
T Consensus 88 ~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 88 IAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred CCcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 3455667777788999999999999988664433 2223358999999999999999999999999999998776554
Q ss_pred Ee
Q 012007 199 KR 200 (473)
Q Consensus 199 ~~ 200 (473)
..
T Consensus 168 i~ 169 (1206)
T KOG2079|consen 168 IT 169 (1206)
T ss_pred ee
Confidence 44
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.25 E-value=0.039 Score=55.53 Aligned_cols=192 Identities=15% Similarity=0.128 Sum_probs=104.9
Q ss_pred EEEecCCEEEEee------CCCcEEEe--eCCccccccccCcccEEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCeeeE
Q 012007 128 SLAASGDLLYTGS------DSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQD-GKIRIWKVSRKNASVH 198 (473)
Q Consensus 128 ~~~~~g~~l~tg~------~dg~i~vw--d~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g~i~vwd~~~~~~~~~ 198 (473)
+++++|+.+|.-- .|+.-.|| +.......+.. ....+.-.|+|||+.|++.... ..+++.+-........
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~ 434 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLAR 434 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCCCceEEE
Confidence 4677888766554 24444455 54332222221 2237888999999888887543 2233333222111111
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEE---EEcCCCee-e---E
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV---WRISDCKC-L---E 271 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~v---wd~~~~~~-~---~ 271 (473)
..+.. .. ... .....|..+.|+|||..++... ++.|++ -....|.. + .
T Consensus 435 ~~vd~----------------------ge-~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~ 489 (591)
T PRK13616 435 TPVDA----------------------SA-VAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPR 489 (591)
T ss_pred EeccC----------------------ch-hhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccE
Confidence 11100 00 000 1356799999999999888876 577777 44344531 1 1
Q ss_pred Eeec-CCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 272 SINA-HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 272 ~~~~-~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
.+.. -...+..+.|..++.|+++..++.-.+|.+...+..... .........+.+|+-+++ .++....+|.+.+
T Consensus 490 ~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~---~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 490 EVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDA---LPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred EeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccc---cCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 1222 233468889999997777777776777776654432111 011112456777777763 4666666775444
No 370
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.022 Score=54.85 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=91.9
Q ss_pred CcccEEEEEEeCCCCEEEEEeC---C-CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQ---D-GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~---d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
-...+..-+|++++..++-... . ..+.++++.++....... ..
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---------------------------------~~ 237 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---------------------------------FN 237 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---------------------------------cC
Confidence 3455666788888876654422 2 358888888776443332 22
Q ss_pred CCeeEEEEcCCCCEEEEE-eCCCC--EEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCC
Q 012007 236 DAVSCLSLNAEQGLLYSG-SWDKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~-s~dg~--v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~ 310 (473)
..-..-+|+|||++|+.. ..||. |.+.|+..... ..+....+.-..=.|+|+| .+++.+..|.-.||-....+.
T Consensus 238 g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 238 GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 233346799999877655 45555 66677766663 3344333333345688998 566777778766665543332
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CCc--EEEEecCCc
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DGL--VNFWECEKH 356 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~--i~iwd~~~~ 356 (473)
.. ..+......-..-.|+|+|++|+..+. +|. |.+.|+.+.
T Consensus 317 ~~-----~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 317 QV-----TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred ce-----eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 11 111112222226789999998887664 344 555665543
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.21 E-value=0.056 Score=54.48 Aligned_cols=190 Identities=13% Similarity=0.084 Sum_probs=99.2
Q ss_pred cCcccEEEEEEeCCCCEEEEEe------CCC--eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 159 SNSGLVKAIIISGDSNKIFTGH------QDG--KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 159 ~h~~~V~~l~~s~~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
+....+...+++|+|+.++..- .|. .|.+++..... ....
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt------------------------------ 394 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVL------------------------------ 394 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeee------------------------------
Confidence 3345688999999999887655 243 34444442211 1110
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCC------------CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCC
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWD------------KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSAD 297 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~d------------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~d 297 (473)
.....+.-.|+|+|..|++.... +.+.+.++..+.... .....|..+.|++|| .++... +
T Consensus 395 ---~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~ 467 (591)
T PRK13616 395 ---EGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-G 467 (591)
T ss_pred ---cCCCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-C
Confidence 11236677899998877777532 223333443332222 234579999999999 444333 5
Q ss_pred CcEEEEeCcccCCCc-ceeeeeee-ccCCccEEEEEEccCCCEEEEeCCCCcEEEEec--CCcccccceeec--CcceEE
Q 012007 298 GTVKVWRRELQGKGT-KHCLAQVL-LKHENAVTALAVNQESAVVYCGSSDGLVNFWEC--EKHLSHGGVLRG--HKMAVL 371 (473)
Q Consensus 298 g~i~vwd~~~~~~~~-~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~--~~~~v~ 371 (473)
|.|.+=-+.....+. .......+ ..-...+..+.|..++.++ ++..++...+|.+ ...... .+.. ....+.
T Consensus 468 g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~--~~~~~n~~~~v~ 544 (591)
T PRK13616 468 GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD--ALPSRNLSAPVV 544 (591)
T ss_pred CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccc--ccCCCCccCceE
Confidence 777763222111111 11111112 2233346889999998855 5555554455544 322111 1122 244556
Q ss_pred EEEecCCEEEEEeCCCcEE
Q 012007 372 CLAAAGNLVFSGSADRNIC 390 (473)
Q Consensus 372 ~~~~~~~~l~s~~~dg~i~ 390 (473)
.++-...-++....++.+.
T Consensus 545 ~vaa~~~~iyv~~~~g~~~ 563 (591)
T PRK13616 545 AVAASPSTVYVTDARAVLQ 563 (591)
T ss_pred EEecCCceEEEEcCCceEE
Confidence 6665555566666666443
No 372
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.13 E-value=0.21 Score=47.06 Aligned_cols=197 Identities=12% Similarity=0.120 Sum_probs=87.9
Q ss_pred CCEEEEee-CCCcEEEeeCCcc------cccccc---Cc----ccEEEEEEeCCCCEEEEEeCC------CeEEEEeCCC
Q 012007 133 GDLLYTGS-DSKNIRVWKNLKE------FSGFKS---NS----GLVKAIIISGDSNKIFTGHQD------GKIRIWKVSR 192 (473)
Q Consensus 133 g~~l~tg~-~dg~i~vwd~~~~------~~~~~~---h~----~~V~~l~~s~~~~~l~s~~~d------g~i~vwd~~~ 192 (473)
.++|+..+ ..+.|.|.|+... .+.+.. +. ..-..+..-|+|+.++++-.| |-+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 45666665 6789999997521 122211 11 122333345688888875332 4577777776
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-----------------
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW----------------- 255 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~----------------- 255 (473)
.+..-....... ....-..+-|.|..+.++|..+
T Consensus 167 f~v~g~We~~~~-----------------------------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 167 FEVKGRWEKDRG-----------------------------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp --EEEE--SB-T-----------------------------T------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred ccccceeccCCC-----------------------------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 554433322110 1122345556666666666542
Q ss_pred ---CCCEEEEEcCCCeeeEEeecCCC--ceeEEEEcCC--C--EEEEEeCCCcEEEEeCcccCCCcceeeeee-------
Q 012007 256 ---DKTLKVWRISDCKCLESINAHDD--AINSVVAGFD--S--LVFTGSADGTVKVWRRELQGKGTKHCLAQV------- 319 (473)
Q Consensus 256 ---dg~v~vwd~~~~~~~~~~~~~~~--~v~~l~~~~~--~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------- 319 (473)
..++.+||+.+.+.++++..... ....|.|..+ . -++.+.-..+|..|-....+.=.....+..
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 46799999999999999875432 3556666544 2 233333445555554321111000011110
Q ss_pred ---------eccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCCccc
Q 012007 320 ---------LLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEKHLS 358 (473)
Q Consensus 320 ---------~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~ 358 (473)
+..-..-|+.|.++.|.++|+.++ .+|.|+.||+.....
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 001134579999999999887654 589999999976443
No 373
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.09 E-value=0.25 Score=46.13 Aligned_cols=299 Identities=12% Similarity=0.108 Sum_probs=122.9
Q ss_pred EEEecCC-EEEEeeCCCcEEEe--eCC-ccccccccCc-ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 128 SLAASGD-LLYTGSDSKNIRVW--KNL-KEFSGFKSNS-GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 128 ~~~~~g~-~l~tg~~dg~i~vw--d~~-~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
|+..+|+ +|+.+..||.-.+| |+. ..+..+.... .......++++++.|+-...+..|+.-|+.+.+......+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 4555675 55555557766666 554 3344444333 22334667788888876666678888999988765444432
Q ss_pred cccccceeEeecCC--CcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCce
Q 012007 203 SLPTFKDYVKSSVN--PKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI 280 (473)
Q Consensus 203 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v 280 (473)
.. +..+.....+ ...++-+... .......-.|... ..++-+--...|.-.|+.+|+....+. ....+
T Consensus 122 ~~--~~g~gt~v~n~d~t~~~g~e~~-------~~d~~~l~~~~~f-~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wl 190 (386)
T PF14583_consen 122 DD--WKGYGTWVANSDCTKLVGIEIS-------REDWKPLTKWKGF-REFYEARPHCRIFTIDLKTGERKVVFE-DTDWL 190 (386)
T ss_dssp TT--EEEEEEEEE-TTSSEEEEEEEE-------GGG-----SHHHH-HHHHHC---EEEEEEETTT--EEEEEE-ESS-E
T ss_pred cc--cccccceeeCCCccEEEEEEEe-------ehhccCccccHHH-HHHHhhCCCceEEEEECCCCceeEEEe-cCccc
Confidence 11 1111111000 0011000000 0000000000000 000111112346667888877654444 45567
Q ss_pred eEEEEcCCC-EEEEEeCC----C-cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE-----eCCCCcEE
Q 012007 281 NSVVAGFDS-LVFTGSAD----G-TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC-----GSSDGLVN 349 (473)
Q Consensus 281 ~~l~~~~~~-~l~s~~~d----g-~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-----~~~dg~i~ 349 (473)
.-+.++|.. .+++=+.. . .-+||-++..+... ..+... .....+..=-|.|||..|.- +..+..|.
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~--~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV--KKVHRR-MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc--eeeecC-CCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 788888875 33333332 2 23778776544321 111111 12334455568888876543 22344577
Q ss_pred EEecCCcccccceeecCcceEEEEEecCCEEEEEeCCC----------------cEEEEecCCCCceeEEEE-------e
Q 012007 350 FWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADR----------------NICLWRREESGAHSCLAV-------L 406 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg----------------~i~iwd~~~~~~~~~~~~-------~ 406 (473)
-+|+.+..... ........-.-.+++|++++-=+.|. -|+++++..+.. ..+.. +
T Consensus 268 ~~d~~t~~~~~-~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~-~~l~~h~~sw~v~ 345 (386)
T PF14583_consen 268 GYDPDTGERRR-LMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF-RKLARHDTSWKVL 345 (386)
T ss_dssp EE-TTT--EEE-EEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE-EEEEE-------B
T ss_pred eeCCCCCCceE-EEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce-eeeeeccCcceee
Confidence 77777653321 11111122233346788776544442 456677765322 22222 1
Q ss_pred cCCCC-ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 407 TGHTG-PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 407 ~~h~~-~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.++.. .=-...|+||++. +|+++...|...||-+.-
T Consensus 346 ~~~~q~~hPhp~FSPDgk~------------VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 346 DGDRQVTHPHPSFSPDGKW------------VLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp TTBSSTT----EE-TTSSE------------EEEEE-TTSS-EEEEEE-
T ss_pred cCCCccCCCCCccCCCCCE------------EEEECCCCCCccEEEEeC
Confidence 22111 1145788888874 889999999988886643
No 374
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.09 E-value=0.32 Score=47.31 Aligned_cols=199 Identities=13% Similarity=0.093 Sum_probs=105.0
Q ss_pred eeEEEEcCCCCEEEEE-eCCC----CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCC----------cE
Q 012007 238 VSCLSLNAEQGLLYSG-SWDK----TLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADG----------TV 300 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~-s~dg----~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg----------~i 300 (473)
+..+.++|++++++.+ +..| .|+++|+++++.+...-.. .....+.|.+++ ++++...+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467899999988865 4444 4999999999876543111 112238999986 444443332 25
Q ss_pred EEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC---C-CcEEEEecCCc----ccccceeecCcceEEE
Q 012007 301 KVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS---D-GLVNFWECEKH----LSHGGVLRGHKMAVLC 372 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---d-g~i~iwd~~~~----~~~~~~~~~~~~~v~~ 372 (473)
..|++.+.. ..-.++............+..++++++|+.... + ..+.+.|+... ................
T Consensus 205 ~~~~~gt~~--~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 205 YRHKLGTPQ--SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEETTS-G--GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEECCCCh--HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 666664321 111122222222223678889999998775432 2 45777788763 2222233333333334
Q ss_pred EEecCCEEEEEe----CCCcEEEEecCCCCceeEEEEecCCCC--ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc
Q 012007 373 LAAAGNLVFSGS----ADRNICLWRREESGAHSCLAVLTGHTG--PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446 (473)
Q Consensus 373 ~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~ 446 (473)
+...+..|+.-+ .++.|.-.++.......-...+..|.. .+..+....+. +++..-.++.
T Consensus 283 v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~--------------Lvl~~~~~~~ 348 (414)
T PF02897_consen 283 VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY--------------LVLSYRENGS 348 (414)
T ss_dssp EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE--------------EEEEEEETTE
T ss_pred EEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE--------------EEEEEEECCc
Confidence 444455444333 235677777776443222224445554 45555544332 5666666654
Q ss_pred --EEEEEcC
Q 012007 447 --VKVWRVS 453 (473)
Q Consensus 447 --v~iW~i~ 453 (473)
|+++++.
T Consensus 349 ~~l~v~~~~ 357 (414)
T PF02897_consen 349 SRLRVYDLD 357 (414)
T ss_dssp EEEEEEETT
T ss_pred cEEEEEECC
Confidence 7788887
No 375
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.93 E-value=0.14 Score=51.52 Aligned_cols=186 Identities=15% Similarity=0.187 Sum_probs=97.1
Q ss_pred CCCEEEEEeCC------CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCCCc-----EEEEeCcccCCCc
Q 012007 246 EQGLLYSGSWD------KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSADGT-----VKVWRRELQGKGT 312 (473)
Q Consensus 246 ~~~~l~s~s~d------g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~ 312 (473)
++.+.++|+.| .++..||..+.+-.. .+...... ..++...+.+.++|+.||. +-.||.+..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~-~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~---- 406 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD-FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN---- 406 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc-ceeEEECCEEEEEeccccccccccEEEecCCCC----
Confidence 45778888888 347778877655222 22211111 1223333347778888864 667776532
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC------cEEEEecCCccc-ccceeecCcceEEEEEecCCEEEEEeC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG------LVNFWECEKHLS-HGGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg------~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
.+.....+.......-...+ +|.+.++|+.++ .+..||..+..- ....+..-.........++.+.+.||.
T Consensus 407 ~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGF 484 (571)
T ss_pred cccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCc
Confidence 23332222222222222222 577788887654 467788765321 111111112222344567888888888
Q ss_pred CCc-----EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc-----EEEEEcCC
Q 012007 386 DRN-----ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS-----VKVWRVSE 454 (473)
Q Consensus 386 dg~-----i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~-----v~iW~i~~ 454 (473)
|+. |..||..+ ..+..+.........+....+. +. +.+.|+.||. |..||...
T Consensus 485 ~~~~~~~~VE~ydp~~-~~W~~v~~m~~~rs~~g~~~~~--~~-------------ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 485 DGTSALSSVERYDPET-NQWTMVAPMTSPRSAVGVVVLG--GK-------------LYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cCCCccceEEEEcCCC-CceeEcccCccccccccEEEEC--CE-------------EEEEecccCccccceeEEcCCCC
Confidence 763 77788877 3344444333333332222222 22 7888888875 55565443
No 376
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.90 E-value=0.073 Score=51.31 Aligned_cols=156 Identities=14% Similarity=0.104 Sum_probs=92.3
Q ss_pred CCeeEEEEcCCCCEEEEEe---CC-CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccC
Q 012007 236 DAVSCLSLNAEQGLLYSGS---WD-KTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s---~d-g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~ 309 (473)
..+..-+|++++..++-.. .. ..+.++|+.+++....+. ..+.-..-.|+|++ ++++...||...||-.....
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 3445556888777654432 22 359999999887655554 22333455789998 67777888876666444322
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCc--EEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCC
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGL--VNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD 386 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d 386 (473)
+. ...+....+.-+.=.|+|||+.++-.+ ..|. |.++|.+..........+.......++++|++|+..+..
T Consensus 272 ~~-----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 272 KN-----LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred Cc-----ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 21 111222222233567999998876654 4454 566666654433333333333466788999988877743
Q ss_pred -Cc--EEEEecCCC
Q 012007 387 -RN--ICLWRREES 397 (473)
Q Consensus 387 -g~--i~iwd~~~~ 397 (473)
|. |.+.|+.++
T Consensus 347 ~g~~~i~~~~~~~~ 360 (425)
T COG0823 347 GGQWDIDKNDLASG 360 (425)
T ss_pred CCceeeEEeccCCC
Confidence 44 666666664
No 377
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.85 E-value=0.61 Score=46.71 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.3
Q ss_pred EEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 437 TVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 437 ~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
+++.++.||.++.+|..+++..++.
T Consensus 474 lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 474 LVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred EEEEECCCCeEEEEECCCCCEeEEE
Confidence 5677888999999999999887764
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.026 Score=53.66 Aligned_cols=143 Identities=13% Similarity=0.187 Sum_probs=94.4
Q ss_pred CCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC-
Q 012007 171 GDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG- 248 (473)
Q Consensus 171 ~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~- 248 (473)
.+.++|+ ++.....++-.|++.++.+..... ...|.-+.+.|+.+
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~---------------------------------~~di~mv~~t~d~K~ 389 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKF---------------------------------EDDINMVDITPDFKF 389 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeec---------------------------------cCCcceeeccCCcch
Confidence 3444444 344455677778888876655543 22255666666432
Q ss_pred ------EEEEEeCCCCEEEEEcCCC-e-eeEEeecC----CCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 249 ------LLYSGSWDKTLKVWRISDC-K-CLESINAH----DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 249 ------~l~s~s~dg~v~vwd~~~~-~-~~~~~~~~----~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
.-+.|-.|..|.-||.+-. + .+...+.| .....|.+-..+|++++|+.+|.|++||.- ....
T Consensus 390 ~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri------~~~A 463 (644)
T KOG2395|consen 390 AQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRI------GRRA 463 (644)
T ss_pred hcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhh------hhhh
Confidence 2345667889999998732 2 22222222 345677888888999999999999999973 2223
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
...+.+-..+|..+..+.+|++|++.+ +.++.+.++
T Consensus 464 KTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 464 KTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred hhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 345667788999999999999987665 456666664
No 379
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.77 E-value=0.0048 Score=52.12 Aligned_cols=137 Identities=18% Similarity=0.247 Sum_probs=80.2
Q ss_pred EEEeeCCCcEEEeeCCcccccc---ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 136 LYTGSDSKNIRVWKNLKEFSGF---KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 136 l~tg~~dg~i~vwd~~~~~~~~---~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
|..-+.||.|+-+++.+..... ..|... .....-+..|+.|+.+|.|.+|+............
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~----------- 98 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVC----------- 98 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhh-----------
Confidence 3444567888888765322211 112222 11122345799999999999998863221110000
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeE-EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCC-CceeEEE-EcCCC
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSC-LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD-DAINSVV-AGFDS 289 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~-~~~~~ 289 (473)
.-...|.+ +.-..++.+.++++.||.|+.|++.-.+.+.....|. ..+..+. ...+.
T Consensus 99 --------------------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~ 158 (238)
T KOG2444|consen 99 --------------------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDE 158 (238)
T ss_pred --------------------cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCc
Confidence 01122222 2222356689999999999999999888887777776 3443333 33444
Q ss_pred EEEEE--eCCCcEEEEeCc
Q 012007 290 LVFTG--SADGTVKVWRRE 306 (473)
Q Consensus 290 ~l~s~--~~dg~i~vwd~~ 306 (473)
.+... +.|..++.|++.
T Consensus 159 ~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 159 FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eEEeeccccchhhhhcchh
Confidence 55555 777777777765
No 380
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.75 E-value=0.44 Score=43.55 Aligned_cols=157 Identities=10% Similarity=0.051 Sum_probs=76.0
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
-...+..+.-+++|.+++++.....+.-||--...-...-......|..+.|.+++.|......|.|++=+..... ..
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~--~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG--ET 220 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE--EE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc--cc
Confidence 3466788888999999988876655667875432122222234578999999999977667789999887721110 11
Q ss_pred eee-eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe-cCCEEEEEeCCCcEEE
Q 012007 314 HCL-AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA-AGNLVFSGSADRNICL 391 (473)
Q Consensus 314 ~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~i 391 (473)
... ..........+..++|.+++...++|+....++--|--+..+.......-......+.+ +.+.-++-+.+|.|.-
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~ 300 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLR 300 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEE
Confidence 111 11111233458999999998888877765333333322211111111112223444443 3445555566887765
Q ss_pred E
Q 012007 392 W 392 (473)
Q Consensus 392 w 392 (473)
|
T Consensus 301 ~ 301 (302)
T PF14870_consen 301 Y 301 (302)
T ss_dssp E
T ss_pred e
Confidence 5
No 381
>PHA02713 hypothetical protein; Provisional
Probab=96.73 E-value=0.061 Score=54.24 Aligned_cols=144 Identities=5% Similarity=-0.030 Sum_probs=76.0
Q ss_pred CCCEEEEEeCCC-----CEEEEEcCCCeee--EEeecCCCceeEEEEcCCCEEEEEeCCC--------------------
Q 012007 246 EQGLLYSGSWDK-----TLKVWRISDCKCL--ESINAHDDAINSVVAGFDSLVFTGSADG-------------------- 298 (473)
Q Consensus 246 ~~~~l~s~s~dg-----~v~vwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~l~s~~~dg-------------------- 298 (473)
++++.+.||.++ .+..||..+.+-. ..+....... +++...+...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence 567777777654 4788998765322 2222111111 22222233555566542
Q ss_pred ---cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC------CcEEEEecCC--cccccceeecCc
Q 012007 299 ---TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD------GLVNFWECEK--HLSHGGVLRGHK 367 (473)
Q Consensus 299 ---~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d------g~i~iwd~~~--~~~~~~~~~~~~ 367 (473)
.+..||.+.. .+.....+....... +++. -++++.+.|+.+ ..+..||.++ .......+....
T Consensus 430 ~~~~ve~YDP~td----~W~~v~~m~~~r~~~-~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 430 SSNKVIRYDTVNN----IWETLPNFWTGTIRP-GVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred ccceEEEECCCCC----eEeecCCCCcccccC-cEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 4667776532 222222221111111 1222 245666667654 2467899876 233333343344
Q ss_pred ceEEEEEecCCEEEEEeCCC--cEEEEecCC
Q 012007 368 MAVLCLAAAGNLVFSGSADR--NICLWRREE 396 (473)
Q Consensus 368 ~~v~~~~~~~~~l~s~~~dg--~i~iwd~~~ 396 (473)
........++.+.++|+.|+ .+..||..+
T Consensus 504 ~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 504 SALHTILHDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred ccceeEEECCEEEEEeeecceeehhhcCccc
Confidence 44455566899999999888 677888876
No 382
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.71 E-value=0.44 Score=48.10 Aligned_cols=144 Identities=18% Similarity=0.229 Sum_probs=77.3
Q ss_pred CCCEEEEEeCCCC-----EEEEEcCCCee--eEEeecCCCceeEEEEcCCCEEEEEeCCC------cEEEEeCcccCCCc
Q 012007 246 EQGLLYSGSWDKT-----LKVWRISDCKC--LESINAHDDAINSVVAGFDSLVFTGSADG------TVKVWRRELQGKGT 312 (473)
Q Consensus 246 ~~~~l~s~s~dg~-----v~vwd~~~~~~--~~~~~~~~~~v~~l~~~~~~~l~s~~~dg------~i~vwd~~~~~~~~ 312 (473)
+|.+.++|+.||. |..||..+.+- +..+.... .-.+++.......++|+.++ .+..||..+.
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r-~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~---- 454 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR-SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN---- 454 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcce-eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC----
Confidence 6778888888865 67777765432 22121111 11122222233566666554 4677777642
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc-----EEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeCC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL-----VNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSAD 386 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~d 386 (473)
.+.....+..-..... ++. -++.+.+.|+.|+. |..||..+..-. ..........+-+...++...++|+.|
T Consensus 455 ~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~ 532 (571)
T KOG4441|consen 455 TWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFD 532 (571)
T ss_pred ceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEeccc
Confidence 2322222222222222 222 25677888887763 777887753222 222333344445556678888888877
Q ss_pred C-----cEEEEecCC
Q 012007 387 R-----NICLWRREE 396 (473)
Q Consensus 387 g-----~i~iwd~~~ 396 (473)
| +|..||..+
T Consensus 533 ~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 533 GNNNLNTVECYDPET 547 (571)
T ss_pred CccccceeEEcCCCC
Confidence 6 366676665
No 383
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.67 E-value=0.27 Score=46.88 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=51.8
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCc-eeEEEEecCCCC--C---cccccCCCccEEEEEeeC
Q 012007 370 VLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGP-VKCLAVEEDRDH--D---HEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 370 v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~--~---~~~~~~~~~~~~l~s~s~ 443 (473)
..+++|++++.++...=|.|.++|+.. ...++.++|..+. +.-+........ . ..........++++-+-.
T Consensus 312 ~i~~sP~~~laA~tDslGRV~LiD~~~---~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 312 SICLSPSGRLAAVTDSLGRVLLIDVAR---GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCC---ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 356678888888887779999999998 4666666665442 111111111110 0 000001112345666777
Q ss_pred CCcEEEEEcCCCCCCc
Q 012007 444 DKSVKVWRVSEHAPDL 459 (473)
Q Consensus 444 Dg~v~iW~i~~~~~~~ 459 (473)
-|.|.||.+..+.+..
T Consensus 389 Rg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVA 404 (415)
T ss_pred CCeEEEEecCCCCEEE
Confidence 8999999999886543
No 384
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.69 Score=44.33 Aligned_cols=194 Identities=19% Similarity=0.189 Sum_probs=120.0
Q ss_pred eeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeC---CCcEEEEeCcccCCCc
Q 012007 238 VSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSA---DGTVKVWRRELQGKGT 312 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~---dg~i~vwd~~~~~~~~ 312 (473)
-..+++++.++.++... .++.|.+.|..+.+.+....... ....+++.+++ .++.+.. ++.+.+.|.....
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~--- 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK--- 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe---
Confidence 34677888887555544 45899999988877777665433 56678888887 5544444 6778888765321
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCCccccc-----ceeecCcceEEEEEecCCEEEEEeCC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEKHLSHG-----GVLRGHKMAVLCLAAAGNLVFSGSAD 386 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~l~s~~~d 386 (473)
.. ........+ ..+++.|+|..++... .++.|.+.|........ ....+.......+.++|.++.+....
T Consensus 152 --~~-~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 152 --VT-ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred --EE-EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence 12 222222233 8899999999666655 78899999976543221 11222233456778888866665544
Q ss_pred ---CcEEEEecCCCCceeEEEE-ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe-eCCCcEEEEEcCCC
Q 012007 387 ---RNICLWRREESGAHSCLAV-LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG-SLDKSVKVWRVSEH 455 (473)
Q Consensus 387 ---g~i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~-s~Dg~v~iW~i~~~ 455 (473)
+.+...|..+. ..... ...-......+.+.|++. .+... +..+.|.+-|....
T Consensus 228 ~~~~~v~~id~~~~---~v~~~~~~~~~~~~~~v~~~p~g~-------------~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 228 SGSNNVLKIDTATG---NVTATDLPVGSGAPRGVAVDPAGK-------------AAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred CCCceEEEEeCCCc---eEEEeccccccCCCCceeECCCCC-------------EEEEEecCCCeEEEEeCCCC
Confidence 58888888773 33332 111111456788999988 44444 33466777666553
No 385
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.45 Score=42.30 Aligned_cols=168 Identities=7% Similarity=0.047 Sum_probs=104.5
Q ss_pred ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 158 KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 158 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
.+-...|.++.|+|+.+.|++......-.||=...++.........+ ..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-------------------------------~D 130 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-------------------------------SD 130 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-------------------------------CC
Confidence 44455599999999999999988877777776667776665554422 22
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE----------eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCc
Q 012007 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES----------INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~----------~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~ 306 (473)
...|.+..++.+.++--.++.+.++.+.....+.. ..........++|.+.+ .|+.+-...-+.||.+.
T Consensus 131 pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 131 PETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred hhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 23466666777777666777788777654422211 11124567789998876 77777777778888765
Q ss_pred ccCCCcceeeeeeecc----CCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCc
Q 012007 307 LQGKGTKHCLAQVLLK----HENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~----~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~ 356 (473)
................ .-..|.++.|++ .+.+|+-+.+++.+.-.|....
T Consensus 211 ~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 211 QSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 2221111100000000 123467788887 4566777777777777777643
No 386
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.58 E-value=0.0077 Score=37.55 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=30.7
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
....|.+++|+|..++||.|+.||.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 4457999999999999999999999999998 5554
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.52 E-value=0.63 Score=42.52 Aligned_cols=155 Identities=12% Similarity=0.149 Sum_probs=80.8
Q ss_pred cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 159 SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 159 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
.-.+.+..+.-++||++++++.......-||-....-..+.+ .....|
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r--------------------------------~~~~ri 189 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR--------------------------------NSSRRI 189 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----------------------------------SSS-E
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc--------------------------------Ccccee
Confidence 345778999999999999888766666778765433322222 145789
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEc-CCCeeeEE----eecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcc
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRI-SDCKCLES----INAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~-~~~~~~~~----~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
..|.|.|++.+.+.+ ..|.|+.=+. ...+.... +....-.+..+++.+++.+.+++..|.+.+ ..+ ++ ..
T Consensus 190 q~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~D-gG--kt 264 (302)
T PF14870_consen 190 QSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STD-GG--KT 264 (302)
T ss_dssp EEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESS-TT--SS
T ss_pred hhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCC-CC--cc
Confidence 999999997766644 7888888772 22222211 112233478899998887777777775533 222 11 22
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
.........-...+..|.|.+..+-++. +.+|.|.-|
T Consensus 265 W~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 265 WQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp -EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred ceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 3222333344566888888766555554 467776544
No 388
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.48 E-value=0.091 Score=44.76 Aligned_cols=124 Identities=13% Similarity=0.167 Sum_probs=77.9
Q ss_pred CcEEEeeCCccccccccCcccEEEEEEeCCCCEEE-EEeCCCeEEEEe--CCCCCeeeEEeeccccccceeEeecCCCcc
Q 012007 143 KNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIF-TGHQDGKIRIWK--VSRKNASVHKRVGSLPTFKDYVKSSVNPKN 219 (473)
Q Consensus 143 g~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (473)
|.++.|-....+..+...-+--+.++|+.+.+.+. +-+.+-.|.-|| ..++.......+
T Consensus 139 g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i------------------ 200 (310)
T KOG4499|consen 139 GELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVI------------------ 200 (310)
T ss_pred cEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCccee------------------
Confidence 45556655444444444444456788987776554 445567787788 455543222111
Q ss_pred eEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC
Q 012007 220 YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289 (473)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~ 289 (473)
+.++..+.. ..-.--.++...+|++.++.-..++|...|..+|+.+.+++.....|++++|.-.+
T Consensus 201 -~dlrk~~~~----e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 201 -FDLRKSQPF----ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred -EEeccCCCc----CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence 111111000 01111234456688888888888999999999999999999999999999997653
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.14 Score=45.12 Aligned_cols=194 Identities=17% Similarity=0.189 Sum_probs=103.6
Q ss_pred EEeCCCCEEEEEeCC-----CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 168 IISGDSNKIFTGHQD-----GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 168 ~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
.|++||.+|+..-.| |.|-|||...+- .++.+.+ .|.-.-..+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~f----qrvgE~~---------------------------t~GiGpHev~ 168 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGF----QRVGEFS---------------------------THGIGPHEVT 168 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccccc----ceecccc---------------------------cCCcCcceeE
Confidence 589999999876544 789999987432 1122221 1444456788
Q ss_pred EcCCCCEEEEEeC------------------CCCEEEEEcCCCeeeEEe--e--cCCCceeEEEEcCCCEEEEEeC-CCc
Q 012007 243 LNAEQGLLYSGSW------------------DKTLKVWRISDCKCLESI--N--AHDDAINSVVAGFDSLVFTGSA-DGT 299 (473)
Q Consensus 243 ~~~~~~~l~s~s~------------------dg~v~vwd~~~~~~~~~~--~--~~~~~v~~l~~~~~~~l~s~~~-dg~ 299 (473)
|.+||+.++.+.. .-.+.+.|..+|+.+.+. . .+...|..++..+++.+..|+. .|.
T Consensus 169 lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~ 248 (366)
T COG3490 169 LMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGP 248 (366)
T ss_pred EecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCC
Confidence 8999998887752 112334444455544332 2 2344677777777775555543 111
Q ss_pred ----EEEEeCcccCCCc--ceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCCcccccceeecCcceEEE
Q 012007 300 ----VKVWRRELQGKGT--KHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 300 ----i~vwd~~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
--+.-....++.. ..............|-+|+.+.+..+++..+ ..+...+||..++...... .-..+..
T Consensus 249 ~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a---~l~daaG 325 (366)
T COG3490 249 RNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA---ALPDAAG 325 (366)
T ss_pred CccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecc---ccccccc
Confidence 0000000000000 0000111122334567788887555555444 4556789999887544211 1122344
Q ss_pred EEecCCEEEEEeCCCcEEEEecC
Q 012007 373 LAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 373 ~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
+.....-+++.+.+|.+.++...
T Consensus 326 va~~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 326 VAAAKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred ceeccCceEEecCCceEEecccc
Confidence 55565666666778888888543
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.013 Score=60.21 Aligned_cols=102 Identities=22% Similarity=0.403 Sum_probs=74.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
.+..++.|+..|.|-..|+...-....... .-..+|++++|+.+|..++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne-------------------------------~v~~~Vtsvafn~dg~~l~ 146 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNE-------------------------------RVQGPVTSVAFNQDGSLLL 146 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCC-------------------------------ccCCcceeeEecCCCceec
Confidence 445788888888888888765411000000 1567899999999999999
Q ss_pred EEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEE---cCC-CEEEEEeCCCcEEEEeCc
Q 012007 252 SGSWDKTLKVWRISDCKCLESINAHDDAINSVVA---GFD-SLVFTGSADGTVKVWRRE 306 (473)
Q Consensus 252 s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~---~~~-~~l~s~~~dg~i~vwd~~ 306 (473)
.|-.+|.|.+||+..++.++.+..|..+...+.+ ..+ ..++++...|. +|.+.
T Consensus 147 ~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 147 AGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 9999999999999999999988877766666543 233 36778777776 66543
No 391
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.19 E-value=1.9 Score=44.76 Aligned_cols=305 Identities=16% Similarity=0.156 Sum_probs=156.4
Q ss_pred cccEEEEEec--------CCEEEEeeCCCcEEEeeCC--ccc-----cccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 123 EGHIYSLAAS--------GDLLYTGSDSKNIRVWKNL--KEF-----SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 123 ~~~V~~~~~~--------g~~l~tg~~dg~i~vwd~~--~~~-----~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
+..|.|+..+ .++++.|..+..+.+--.. ..+ .....-...|.-.++-.|..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 3557777543 2289999887766654211 111 111222355667777777889999999999887
Q ss_pred EeCCCCC--eeeEE--eeccccccceeEeecCCCcceEEEeecceeeEeeccCC----------eeE-EEEcC--CCCEE
Q 012007 188 WKVSRKN--ASVHK--RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA----------VSC-LSLNA--EQGLL 250 (473)
Q Consensus 188 wd~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------v~~-l~~~~--~~~~l 250 (473)
+.++... ..... .++..|.. +..........+.....++.....+.+. +.. +.|+. -...|
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~--Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPIS--LRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEcccceEccccccccCCCCcE--EEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceE
Confidence 6554433 22222 12222211 1111111122222222222222222221 111 11222 12345
Q ss_pred EEEeCCCCEEEEEcCCCee--eEEeecCCCceeEEEEcCCC-EEEEEeC-----------CC---cEEEEeCcccCCCcc
Q 012007 251 YSGSWDKTLKVWRISDCKC--LESINAHDDAINSVVAGFDS-LVFTGSA-----------DG---TVKVWRRELQGKGTK 313 (473)
Q Consensus 251 ~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~v~~l~~~~~~-~l~s~~~-----------dg---~i~vwd~~~~~~~~~ 313 (473)
+++. .+.+++.-+..-+. ++++.. ......+++.+.. .+++.+. .. .++++|-.+ .
T Consensus 688 ~~~~-~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT-----f 760 (1096)
T KOG1897|consen 688 ASAN-GGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT-----F 760 (1096)
T ss_pred EEec-CCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCc-----e
Confidence 5554 45677776654332 233332 2344556665533 2222221 11 244555432 1
Q ss_pred eeeeeeeccCC---ccEEEEEEccC-CCEEEEeCC----------CCcEEEEecCCcccccceeec--CcceEEEEE-ec
Q 012007 314 HCLAQVLLKHE---NAVTALAVNQE-SAVVYCGSS----------DGLVNFWECEKHLSHGGVLRG--HKMAVLCLA-AA 376 (473)
Q Consensus 314 ~~~~~~~~~~~---~~v~~l~~~~~-~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~-~~ 376 (473)
..+........ ..|.++.|..| +.++++|+. .|.|.+|.......+ ..... -.+.+.++. ++
T Consensus 761 ~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L-~~v~e~~v~Gav~aL~~fn 839 (1096)
T KOG1897|consen 761 EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL-ELVAETVVKGAVYALVEFN 839 (1096)
T ss_pred eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce-eeeeeeeeccceeehhhhC
Confidence 11111111111 23445558777 677777753 477888877652222 12222 234445553 56
Q ss_pred CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 377 GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 377 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
|++||.- ...|++|+..+ .+.++.-..|..++..+...-.+. .++.|..-+++.+-.....
T Consensus 840 gkllA~I--n~~vrLye~t~---~~eLr~e~~~~~~~~aL~l~v~gd-------------eI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 840 GKLLAGI--NQSVRLYEWTT---ERELRIECNISNPIIALDLQVKGD-------------EIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred CeEEEec--CcEEEEEEccc---cceehhhhcccCCeEEEEEEecCc-------------EEEEeeccceEEEEEEecc
Confidence 7777654 45799999988 456666677888899999888887 7888888888777655443
No 392
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.19 E-value=0.023 Score=35.41 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=28.5
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
...|.+++|+|...+||.+..+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.18 E-value=0.71 Score=39.58 Aligned_cols=138 Identities=12% Similarity=0.103 Sum_probs=77.5
Q ss_pred CCeeEEEEcCCCCEEEEEeC-C---------CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEE
Q 012007 236 DAVSCLSLNAEQGLLYSGSW-D---------KTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVW 303 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~-d---------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vw 303 (473)
...+.-..+|+|++ +.|.. | |.++.|-. +..+..+...-..-+.++|..+. +.++-+.+-+|.-|
T Consensus 109 nR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCCCce-eeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 44555667888887 44432 1 22333322 11122222223344667787665 55666777888788
Q ss_pred eC--cccCCCcceeeeeeecc----CCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecC
Q 012007 304 RR--ELQGKGTKHCLAQVLLK----HENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAG 377 (473)
Q Consensus 304 d~--~~~~~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 377 (473)
|. .++.......+ ..+.. .....-.+++..+|++.++.-..++|...|..+++.+..+.. ....++|.++-|
T Consensus 186 dyd~~tG~~snr~~i-~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl-Pt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVI-FDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL-PTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCccee-EEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc-CCCceEEEEecC
Confidence 84 33322121111 11111 111123455677888888888889999999998876654433 366777777765
Q ss_pred C
Q 012007 378 N 378 (473)
Q Consensus 378 ~ 378 (473)
.
T Consensus 264 k 264 (310)
T KOG4499|consen 264 K 264 (310)
T ss_pred C
Confidence 5
No 394
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.07 E-value=0.00073 Score=67.52 Aligned_cols=193 Identities=14% Similarity=0.169 Sum_probs=100.3
Q ss_pred CCcEEEeeCCccc---cccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCC--CCeeeEEeeccccccceeEeecC
Q 012007 142 SKNIRVWKNLKEF---SGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSR--KNASVHKRVGSLPTFKDYVKSSV 215 (473)
Q Consensus 142 dg~i~vwd~~~~~---~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~ 215 (473)
.+.|++-+..... ...++..+.|-.++|-.. -..+. -.-|.+.|||++- ++......+....
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~---------- 177 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPIT---------- 177 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecC----------
Confidence 3567776654322 345677888888888432 12222 2336788998864 2221111111000
Q ss_pred CCcceEEEeecceeeEeeccCCeeEEEEcC---CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEE
Q 012007 216 NPKNYVEVRRNRSVLKIRHYDAVSCLSLNA---EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF 292 (473)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~ 292 (473)
.-...+.-+.|.| +.-++..+-.++.|++........ ..+..|...+..+++...+++.
T Consensus 178 -----------------p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~ 239 (1283)
T KOG1916|consen 178 -----------------PYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLK 239 (1283)
T ss_pred -----------------cCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhh
Confidence 0112223344443 556666677777877766544322 3344577777666655444321
Q ss_pred EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC----cccccceeecCc-
Q 012007 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK----HLSHGGVLRGHK- 367 (473)
Q Consensus 293 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~- 367 (473)
.. ..+|||..++..+.||.+++|-+.- ...+....+.|.
T Consensus 240 l~------------------------------------~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 240 LA------------------------------------SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred he------------------------------------eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 11 1677888888888888877775431 111222334444
Q ss_pred ceEEEEEec---------C--CEEEEEe-CCCcEEEEecCCCCceeEE
Q 012007 368 MAVLCLAAA---------G--NLVFSGS-ADRNICLWRREESGAHSCL 403 (473)
Q Consensus 368 ~~v~~~~~~---------~--~~l~s~~-~dg~i~iwd~~~~~~~~~~ 403 (473)
.+-.|+-++ + .++++++ .+..+++|.... ++|+
T Consensus 284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~---w~Cl 328 (1283)
T KOG1916|consen 284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP---WQCL 328 (1283)
T ss_pred CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc---hhhh
Confidence 333444332 1 1344444 345699998765 5665
No 395
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.95 E-value=2.1 Score=42.96 Aligned_cols=70 Identities=16% Similarity=0.073 Sum_probs=44.6
Q ss_pred EEEEcCCCCEEEEEeCC-----C-----------CEEEEEcCCCeeeEEeecCCCceeE---------EEEcCCC----E
Q 012007 240 CLSLNAEQGLLYSGSWD-----K-----------TLKVWRISDCKCLESINAHDDAINS---------VVAGFDS----L 290 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~d-----g-----------~v~vwd~~~~~~~~~~~~~~~~v~~---------l~~~~~~----~ 290 (473)
.+++.++..+++.+... + .|.-.|+++|+....++.....+.. +....++ .
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~ 317 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL 317 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence 34666666666665421 2 5778899999988777643222211 2222233 6
Q ss_pred EEEEeCCCcEEEEeCcccC
Q 012007 291 VFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~~~ 309 (473)
++.+..+|.+.+.|.++++
T Consensus 318 v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 318 LAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEEeCCCceEEEEECCCCc
Confidence 7789999999999988654
No 396
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.88 E-value=0.037 Score=55.96 Aligned_cols=176 Identities=11% Similarity=0.180 Sum_probs=102.6
Q ss_pred ecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCccc-CCCcceeeeeeeccCCccEEEEEEcc---CCCEEEEeCCCCc
Q 012007 274 NAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQ-GKGTKHCLAQVLLKHENAVTALAVNQ---ESAVVYCGSSDGL 347 (473)
Q Consensus 274 ~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg~ 347 (473)
++..+.|-.+.|.... .+. -.-|.+.|||+..- ++......+.........+.-+.|.| +.-++.++-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 4455566666664332 222 33467888987641 22122223333344445555566655 6677888888899
Q ss_pred EEEEecCCcccccceeecCcce-------------EEEEEecCCEEEEEeCCCcEEEEecCC--CCceeEEEEecCCC-C
Q 012007 348 VNFWECEKHLSHGGVLRGHKMA-------------VLCLAAAGNLVFSGSADRNICLWRREE--SGAHSCLAVLTGHT-G 411 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~h~-~ 411 (473)
|++....+... ..+.+|... +..+++||..|+.+..||.+++|.+.- .....|+..++.|. .
T Consensus 207 i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~ 284 (1283)
T KOG1916|consen 207 IRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH 284 (1283)
T ss_pred eeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence 98877654322 344445433 345889999999999999999997642 22356777888887 4
Q ss_pred ceeEEEEecCCCCCcccccCCCccEE-EEEee-CCCcEEEEEcCCCCCC
Q 012007 412 PVKCLAVEEDRDHDHEYHQKGDQRWT-VYSGS-LDKSVKVWRVSEHAPD 458 (473)
Q Consensus 412 ~V~~l~~~~~~~~~~~~~~~~~~~~~-l~s~s-~Dg~v~iW~i~~~~~~ 458 (473)
+-.|.-++.+... ....+.|. +++++ ....+++|.-..-+..
T Consensus 285 p~vC~lc~~~~~~-----~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 285 PRVCWLCHKQEIL-----VVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred Cceeeeecccccc-----CCccceeEEEEecccCCcceeEeeccchhhh
Confidence 4444444443321 11222333 33443 4566999987765544
No 397
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.88 E-value=1.8 Score=41.55 Aligned_cols=75 Identities=11% Similarity=0.133 Sum_probs=50.6
Q ss_pred cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe----cC----------------C-EE
Q 012007 322 KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA----AG----------------N-LV 380 (473)
Q Consensus 322 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~----~~----------------~-~l 380 (473)
.....+.+|+.+|.+++.++...=|.|.++|+.+... ....+|-...-+.|-. .. . ++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v-vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV-VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh-hhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 3445578899999999999988889999999987543 3455555544433321 11 1 23
Q ss_pred EEEeCCCcEEEEecCCC
Q 012007 381 FSGSADRNICLWRREES 397 (473)
Q Consensus 381 ~s~~~dg~i~iwd~~~~ 397 (473)
+-+-.-|.|.||.++.+
T Consensus 384 IyaprRg~lEvW~~~~g 400 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQG 400 (415)
T ss_pred EEeccCCeEEEEecCCC
Confidence 33456788889988873
No 398
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.76 E-value=2.6 Score=43.72 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=53.8
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK-NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
-.|..|.++++|++|+..|..|.+ |-.+-.. .....+.-+ . .....-...-........+...|..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g-----~-------~~i~Crt~~v~~~~~~~~~~~~i~q 151 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDG-----K-------KEINCRTVPVDERFFTSNSSLEIKQ 151 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCC-----C-------cceeEEEEEechhhccCCCCceEEE
Confidence 468999999999999998887644 4433211 000000000 0 0000000000111111135567899
Q ss_pred EEEcCC---CCEEEEEeCCCCEEEEEcCCC
Q 012007 241 LSLNAE---QGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 241 l~~~~~---~~~l~s~s~dg~v~vwd~~~~ 267 (473)
+.|+|. +..|++-..|+++++||+...
T Consensus 152 v~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 152 VRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 999995 578999999999999999754
No 399
>PHA03098 kelch-like protein; Provisional
Probab=95.73 E-value=0.95 Score=45.72 Aligned_cols=187 Identities=10% Similarity=0.076 Sum_probs=86.5
Q ss_pred CCCEEEEEeCCC------CEEEEEcCCCeeeEE--eecCCCceeEEEEcCCCEEEEEeCC-----CcEEEEeCcccCCCc
Q 012007 246 EQGLLYSGSWDK------TLKVWRISDCKCLES--INAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKGT 312 (473)
Q Consensus 246 ~~~~l~s~s~dg------~v~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~ 312 (473)
++..++.|+.++ .+..||..+.+-... +....... +++...+..++.|+.+ ..+..||....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~---- 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVFNNRIYVIGGIYNSISLNTVESWKPGES---- 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEECCEEEEEeCCCCCEecceEEEEcCCCC----
Confidence 455666666542 577888876654221 11111112 2222333466666655 24667776532
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCC------CcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSD------GLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
.+.....+....... +++. -++.+++.|+.+ ..+..||..+..-. ............+...++.+++.|+.
T Consensus 369 ~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 369 KWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred ceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCc
Confidence 122111111111111 1222 256666677632 35788887653211 11111111122334456777777764
Q ss_pred CC--------cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC-----CcEEEEEc
Q 012007 386 DR--------NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD-----KSVKVWRV 452 (473)
Q Consensus 386 dg--------~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D-----g~v~iW~i 452 (473)
++ .+.+||..+ ..+..+..+.........+.+ ++. +++.||.+ ..|.+||.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~r~~~~~~~~--~~~-------------iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVT-NKWTELSSLNFPRINASLCIF--NNK-------------IYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred cCCCCCcccceEEEecCCC-CceeeCCCCCcccccceEEEE--CCE-------------EEEEcCCcCCcccceeEEEeC
Confidence 32 378888876 234433322211111112222 343 66777654 46777876
Q ss_pred CCC
Q 012007 453 SEH 455 (473)
Q Consensus 453 ~~~ 455 (473)
...
T Consensus 511 ~~~ 513 (534)
T PHA03098 511 KTN 513 (534)
T ss_pred CCC
Confidence 654
No 400
>PHA03098 kelch-like protein; Provisional
Probab=95.66 E-value=1.1 Score=45.17 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=71.1
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC------CcEEEEeCcccCCCc
Q 012007 246 EQGLLYSGSWD-----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD------GTVKVWRRELQGKGT 312 (473)
Q Consensus 246 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~ 312 (473)
++.+++.||.+ ..+..||..+.+-.. .+...... .+++...+..++.|+.+ ..+..||+...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~---- 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN---- 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEECCEEEEECCcCCCCcccceEEEEeCCCC----
Confidence 56677777765 347778876654221 12111111 12222333455555532 35778887632
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC--------cEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG--------LVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.+.....+....... +++. .++.+++.|+.++ .+.+||..+..-. ................++.+++.|
T Consensus 417 ~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~G 494 (534)
T PHA03098 417 KWSKGSPLPISHYGG-CAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVG 494 (534)
T ss_pred eeeecCCCCccccCc-eEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEc
Confidence 122211111111111 2222 2456666666432 3788888753211 111111111112233477777777
Q ss_pred eCC-----CcEEEEecCCCCceeEEEE
Q 012007 384 SAD-----RNICLWRREESGAHSCLAV 405 (473)
Q Consensus 384 ~~d-----g~i~iwd~~~~~~~~~~~~ 405 (473)
+.+ +.|.+||..+ ..+..+..
T Consensus 495 G~~~~~~~~~v~~yd~~~-~~W~~~~~ 520 (534)
T PHA03098 495 GDKYEYYINEIEVYDDKT-NTWTLFCK 520 (534)
T ss_pred CCcCCcccceeEEEeCCC-CEEEecCC
Confidence 754 4688888876 33444443
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.48 E-value=1.6 Score=42.71 Aligned_cols=118 Identities=13% Similarity=0.119 Sum_probs=68.9
Q ss_pred eccCCeeEEEEcCC----CCEEEEEeCCCCEEEEEcC-----CCeeeEEeecC-C--C--ceeEEEEcCCC-EEEEEeCC
Q 012007 233 RHYDAVSCLSLNAE----QGLLYSGSWDKTLKVWRIS-----DCKCLESINAH-D--D--AINSVVAGFDS-LVFTGSAD 297 (473)
Q Consensus 233 ~~~~~v~~l~~~~~----~~~l~s~s~dg~v~vwd~~-----~~~~~~~~~~~-~--~--~v~~l~~~~~~-~l~s~~~d 297 (473)
|....|..+.|.|- -..|++......|.||.+. ..+.+..-..+ . - --..+.|+|.. .|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 45567899999984 3356666677899999884 22322221111 1 1 12346788887 33333333
Q ss_pred CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCC
Q 012007 298 GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEK 355 (473)
Q Consensus 298 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~ 355 (473)
..=.+++++.... .++.-....+-|.|.+|.+||+.|+++- ..=.-+|||-..
T Consensus 134 dvSV~~sV~~d~s-----rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDSS-----RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCCc-----eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 3334556553221 2222235568899999999998776653 333457888543
No 402
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=0.32 Score=50.90 Aligned_cols=137 Identities=9% Similarity=-0.045 Sum_probs=84.3
Q ss_pred CCeeEEEEcCCCCEEEEE--eCCCCEEEEEcCCCeeeE-----Eee------cCCCceeEEEEcCCC--EEEEEeCCCcE
Q 012007 236 DAVSCLSLNAEQGLLYSG--SWDKTLKVWRISDCKCLE-----SIN------AHDDAINSVVAGFDS--LVFTGSADGTV 300 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~--s~dg~v~vwd~~~~~~~~-----~~~------~~~~~v~~l~~~~~~--~l~s~~~dg~i 300 (473)
-++..+...+|+...++. +.+-.|..||+++...-. -+. .......++.|.|.- ..+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345555666676654444 334478999997533211 111 122345667787764 66778889999
Q ss_pred EEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc--ccceeecCcceEEEEEecCC
Q 012007 301 KVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS--HGGVLRGHKMAVLCLAAAGN 378 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~ 378 (473)
++..+.... ............++++|+|.|+.++.|-..|++.-|...-... +..........|+++.|-+.
T Consensus 181 ~V~~~~~~~------~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 181 RVKSTKQLA------QNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhh------hhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecc
Confidence 998775221 1111234456789999999999999999999999987653211 11111112467888888654
No 403
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.02 E-value=4.3 Score=41.07 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=36.4
Q ss_pred CcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q 012007 143 KNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 143 g~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
-.|+||+.. ..+..+.-..+.+-.+.|+.+. .|+....||+++||++-...
T Consensus 64 ~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 64 PYIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eeEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhh
Confidence 358888865 4444444444588999999777 55556899999999986543
No 404
>PHA02790 Kelch-like protein; Provisional
Probab=95.01 E-value=3.5 Score=40.98 Aligned_cols=184 Identities=12% Similarity=0.103 Sum_probs=88.2
Q ss_pred CCCEEEEEeCCC-----CEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC--CcEEEEeCcccCCCcceee
Q 012007 246 EQGLLYSGSWDK-----TLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD--GTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 246 ~~~~l~s~s~dg-----~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~ 316 (473)
++.++++|+.++ .+..||..+.+-.. .+....... +++...+...+.|+.+ ..+..||... ..+..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~~~~~iYviGG~~~~~sve~ydp~~----n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVPANNKLYVVGGLPNPTSVERWFHGD----AAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEEECCEEEEECCcCCCCceEEEECCC----CeEEE
Confidence 445667777543 46778887654322 222111111 2222233355566653 3577787642 12222
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEeCCCC---cEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeCCCcEEEE
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCGSSDG---LVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSADRNICLW 392 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iw 392 (473)
...+.........+. -++++.+.|+.++ .+..||.++..-. ...+............++.+.+.|+ .+.+|
T Consensus 346 ~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~y 420 (480)
T PHA02790 346 MPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFY 420 (480)
T ss_pred CCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEe
Confidence 222221121222222 2567777777653 4677887653211 1111111112233355677667664 57789
Q ss_pred ecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC-----CcEEEEEcCCC
Q 012007 393 RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD-----KSVKVWRVSEH 455 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D-----g~v~iW~i~~~ 455 (473)
|..+ +.+..+..+....... +++.. ++. +.+.||.+ .+|..||....
T Consensus 421 dp~~-~~W~~~~~m~~~r~~~-~~~v~-~~~-------------IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 421 CESS-NTWTLIDDPIYPRDNP-ELIIV-DNK-------------LLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cCCC-CcEeEcCCCCCCcccc-EEEEE-CCE-------------EEEECCcCCCcccceEEEEECCCC
Confidence 8876 4455554443222222 23332 333 77777754 35677776644
No 405
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.99 E-value=4.4 Score=42.63 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=72.1
Q ss_pred EEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-CcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec-
Q 012007 330 LAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-HKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT- 407 (473)
Q Consensus 330 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 407 (473)
.++.|-..++++| ....+++||+.+.....+.... -...|..+...+..+++|...-.+.++..+... ..+..+.
T Consensus 939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~--n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRRED--NQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCC--CeEEEEeC
Confidence 3555655566554 4568999999865444333222 366778888899999999877777776655432 2222332
Q ss_pred -CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 408 -GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 408 -~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.-...|+++.+-..+. +|.+..=|.+.+-++......
T Consensus 1016 D~~pR~Vt~~~~lD~~t--------------vagaDrfGNi~~vR~P~d~~e 1053 (1205)
T KOG1898|consen 1016 DPVPRHVTALELLDYDT--------------VAGADRFGNIAVVRIPPDVSE 1053 (1205)
T ss_pred CCccceeeEEEEecCCc--------------eeeccccCcEEEEECCCcchh
Confidence 2345688888777664 777777777777777654433
No 406
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.70 E-value=2.9 Score=37.10 Aligned_cols=177 Identities=12% Similarity=0.039 Sum_probs=98.2
Q ss_pred CCeeEEEEcCCCCEEEEEeCCC--CEEEEEcCCCeeeEEeecCC-CceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCc
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDK--TLKVWRISDCKCLESINAHD-DAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
.-...+.|..++.++-+.+.-| .|+.+|+.+++.+....-.. -.-..++...+......=.++...+||..+-.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~--- 121 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK--- 121 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTE---
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccce---
Confidence 3456788877777777777665 69999999998876655332 23344555555555555678899999986321
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee-ecCcceE---EEEEe-cCCEEEEEeCCC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL-RGHKMAV---LCLAA-AGNLVFSGSADR 387 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v---~~~~~-~~~~l~s~~~dg 387 (473)
....+ .....=..++ .++..|+.+.....|+++|..+......+. .....++ ..+-+ +|...|=.=...
T Consensus 122 ---~~~~~-~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td 195 (264)
T PF05096_consen 122 ---KIGTF-PYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTD 195 (264)
T ss_dssp ---EEEEE-E-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSS
T ss_pred ---EEEEE-ecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCC
Confidence 11221 1223445666 456667777667789999987643322111 1122222 22333 344444444455
Q ss_pred cEEEEecCCCCceeEEEEec---------------CCCCceeEEEEecCCCC
Q 012007 388 NICLWRREESGAHSCLAVLT---------------GHTGPVKCLAVEEDRDH 424 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~---------------~h~~~V~~l~~~~~~~~ 424 (473)
.|...|..++ ..+..+. ......+.||+.|....
T Consensus 196 ~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 196 RIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp EEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred eEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 6777777774 3333221 11356899999998774
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.60 E-value=3.2 Score=37.14 Aligned_cols=150 Identities=15% Similarity=0.071 Sum_probs=88.2
Q ss_pred cEEEEEEeCCCCEEEEEe---CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 163 LVKAIIISGDSNKIFTGH---QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
.+...+++++++.++... ....++++........ .. ....+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~--~~---------------------------------~g~~l~ 69 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP--VL---------------------------------TGGSLT 69 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee--ec---------------------------------cCCccc
Confidence 689999999998877655 3344555554332211 10 122566
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEE-cCCCeee-EEeecC--CCceeEEEEcCCC-EEE---EEeCCCcEEEEeCcccCCC
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWR-ISDCKCL-ESINAH--DDAINSVVAGFDS-LVF---TGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd-~~~~~~~-~~~~~~--~~~v~~l~~~~~~-~l~---s~~~dg~i~vwd~~~~~~~ 311 (473)
.-.|++++...+....+...+++. ..+++.. ..+... ...|..+.+++|+ .++ ....++.|.+--+......
T Consensus 70 ~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g 149 (253)
T PF10647_consen 70 RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG 149 (253)
T ss_pred cccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC
Confidence 678899977666666666667764 3333222 122211 1289999999999 333 3344677777665433322
Q ss_pred cce---eeeeeeccCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 312 TKH---CLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 312 ~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
... ............++.+.|.+++.+++.+...+.
T Consensus 150 ~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 150 VPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred CcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 111 112222234568899999999988777665443
No 408
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=1.3 Score=44.55 Aligned_cols=163 Identities=15% Similarity=0.149 Sum_probs=87.9
Q ss_pred ccccccccceeeeeeecccEEEEEec-CCEEEEeeCCCcEEEeeCCcccccc-----ccCcccEEEEEEeCCCCEEEEEe
Q 012007 107 NLLSSCNGLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNLKEFSGF-----KSNSGLVKAIIISGDSNKIFTGH 180 (473)
Q Consensus 107 ~~~~~~~~~~~~l~~h~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~~~~~~-----~~h~~~V~~l~~s~~~~~l~s~~ 180 (473)
.+....+.+.+.+.-..+.+..+.|+ ..-|++-..||+++||+........ ......|..+.+..+|=.+.+
T Consensus 67 ~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt-- 144 (829)
T KOG2280|consen 67 RIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT-- 144 (829)
T ss_pred EEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--
Confidence 34444555666666666789999998 5578888999999999976443333 223445666666666633333
Q ss_pred CCCeEEE-EeCCCCCeeeEEeecccccc------ceeEeecCCCcceE-------------EEeecceeeEeeccCCeeE
Q 012007 181 QDGKIRI-WKVSRKNASVHKRVGSLPTF------KDYVKSSVNPKNYV-------------EVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 181 ~dg~i~v-wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~v~~ 240 (473)
.+|.+.+ -+.+.... ......|.. .............+ ................+..
T Consensus 145 ~~g~v~~i~~~~~~~~---~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~k 221 (829)
T KOG2280|consen 145 VSGQVILINGVEEPKL---RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVK 221 (829)
T ss_pred cCCcEEEEcCCCcchh---hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEE
Confidence 3444433 33322111 111111100 00000000000111 1111111111112355677
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
+..+|+.++|+-=..+|.|.+-+....+++..+.
T Consensus 222 i~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 222 ISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 8889999999998999999999887777766665
No 409
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=1.4 Score=41.71 Aligned_cols=137 Identities=9% Similarity=0.061 Sum_probs=85.9
Q ss_pred eEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc---c
Q 012007 281 NSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH---L 357 (473)
Q Consensus 281 ~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---~ 357 (473)
+.+.|...+..+.+...|.+.=|-+...+ ...+...-...+++|.++.|++|.+.||+--.|..|.+++.... .
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpn---dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPN---DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCC---CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 44555544544444445556666554222 12223333445679999999999999999999999999998432 2
Q ss_pred cccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 358 SHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
......+.....|..|.|. ..-+|.-. +..+-+|..... ...++..+.|.-.|+...|.++..
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~y~v~pe--krslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTEIAFIT-DQGIEFYQVLPE--KRSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred HHHHHhccCcceeEEEEEecCeeEEEEe-cCCeEEEEEchh--hhhhhhhhhcccCccEEEEccccc
Confidence 2222233334457777765 34455555 334777876652 344556667888899999999876
No 410
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.56 E-value=0.0045 Score=58.05 Aligned_cols=141 Identities=11% Similarity=0.168 Sum_probs=101.8
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeecccccc
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
..+.+.-++.++.+-.+..||-.+....-...++....++|.-++..++ .+-..+.+.+||+.+........-+
T Consensus 42 w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg----- 116 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG----- 116 (615)
T ss_pred EecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC-----
Confidence 3445556888888889999987655544444567778889988886554 4566789999999865422111100
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF 287 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~ 287 (473)
.|.... +.|++....++.+...|.+.|++..+.+.+.....|...+.++++.+
T Consensus 117 -------------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 117 -------------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred -------------------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 022222 67888888999999999999999988777777766889999999999
Q ss_pred CCEEEEEeCCCcEE
Q 012007 288 DSLVFTGSADGTVK 301 (473)
Q Consensus 288 ~~~l~s~~~dg~i~ 301 (473)
+++.+.++.|..+.
T Consensus 170 Ed~vil~dcd~~L~ 183 (615)
T KOG2247|consen 170 EDYVILCDCDNTLS 183 (615)
T ss_pred cceeeecCcHHHHH
Confidence 99888877765543
No 411
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.51 E-value=1.9 Score=43.93 Aligned_cols=120 Identities=11% Similarity=0.088 Sum_probs=72.5
Q ss_pred cEEEEEEcc--CCCEEEEeCCCCcEEEEecCCcc----------cc--------cceeecCcceEEEEEe----cCCEEE
Q 012007 326 AVTALAVNQ--ESAVVYCGSSDGLVNFWECEKHL----------SH--------GGVLRGHKMAVLCLAA----AGNLVF 381 (473)
Q Consensus 326 ~v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~----------~~--------~~~~~~~~~~v~~~~~----~~~~l~ 381 (473)
.|+.|.... +...|+.+..||.|.+|..+.-. .. -.....-...+..++. ..++||
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 355554443 55789999999999999763200 00 0011111223344443 367888
Q ss_pred EEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 382 SGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 382 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
+++....|.||-............-..|...|-+|+|-++.. ...+-..|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~-------d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDL-------DPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCC-------CCccceEEEEEeccCcEEEEEE
Confidence 888888888887654211111111123566799999999874 2222246888999999999988
No 412
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.40 E-value=3.7 Score=37.01 Aligned_cols=232 Identities=13% Similarity=0.103 Sum_probs=116.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 164 VKAIIISGDSNKIFTGHQDGKIRIWKVSRKN-----ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 164 V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
-..|+++|.+.+-++...-+...+||..... ......+...+.. ......
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~-------------------------~~~~~P 79 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPL-------------------------AAEGTP 79 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCC-------------------------CCCCCc
Confidence 3578899988777777777889999986221 1111111100000 012234
Q ss_pred eEEEEcCCC------------CEEEEEeCCCCEEEEEcCCCee-----eEEee-cCCC-ceeEEEEcCC---C-EEEEEe
Q 012007 239 SCLSLNAEQ------------GLLYSGSWDKTLKVWRISDCKC-----LESIN-AHDD-AINSVVAGFD---S-LVFTGS 295 (473)
Q Consensus 239 ~~l~~~~~~------------~~l~s~s~dg~v~vwd~~~~~~-----~~~~~-~~~~-~v~~l~~~~~---~-~l~s~~ 295 (473)
+.+.|+... ..++.+++||+|.-|...-+.. ...+. .... .-..+++... . +.++--
T Consensus 80 TGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF 159 (336)
T TIGR03118 80 TGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF 159 (336)
T ss_pred cEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc
Confidence 444444322 2367889999999998532221 11222 1112 2334555422 2 444445
Q ss_pred CCCcEEEEeCcccCCCcceeee------------eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee
Q 012007 296 ADGTVKVWRRELQGKGTKHCLA------------QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL 363 (473)
Q Consensus 296 ~dg~i~vwd~~~~~~~~~~~~~------------~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 363 (473)
..++|.++|-............ ....+..--|+-..-.++.+.=+.|..-|.|-+||+..........
T Consensus 160 ~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as 239 (336)
T TIGR03118 160 RQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS 239 (336)
T ss_pred CCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEecc
Confidence 6899999986532110000000 0000011112222223333333344556789999987543221111
Q ss_pred ecCcc--eEEEEEe------cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC------CceeEEEEecCCC
Q 012007 364 RGHKM--AVLCLAA------AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT------GPVKCLAVEEDRD 423 (473)
Q Consensus 364 ~~~~~--~v~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~------~~V~~l~~~~~~~ 423 (473)
.+.-. .-+.++| .+.+|+---.||+|..||..++ +.+..+..-. ..++.|+|.....
T Consensus 240 ~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG---~~~g~L~~~~G~pi~i~GLWgL~fGng~~ 310 (336)
T TIGR03118 240 SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG---AQLGQLLDPDNHPVKVDGLWSLTFGNGVS 310 (336)
T ss_pred CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC---ceeeeecCCCCCeEEecCeEEeeeCCCcC
Confidence 11111 2233433 4778887778999999999874 3344443322 2467888887543
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.39 E-value=1.9 Score=43.49 Aligned_cols=114 Identities=11% Similarity=0.130 Sum_probs=70.5
Q ss_pred ccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe----cCCEEEEEeCCCcEEEEecC-----
Q 012007 325 NAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA----AGNLVFSGSADRNICLWRRE----- 395 (473)
Q Consensus 325 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~s~~~dg~i~iwd~~----- 395 (473)
..++-+.-+.-++..++-+....+.|||.+...............|..+.| +++.+++.|..+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344455555555655555556689999998755332222244566766654 68888888889999998532
Q ss_pred -CCCceeEEEEe--cCCC-CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 396 -ESGAHSCLAVL--TGHT-GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 396 -~~~~~~~~~~~--~~h~-~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.+..+..+..+ ..|+ .+|.+..|.++|. |+.|+ ++.+.|++-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--------------LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--------------LVVGS-GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCe--------------EEEEe-CCEEEEECCC
Confidence 11223333332 3444 5899999999996 44443 3467777643
No 414
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=0.61 Score=48.99 Aligned_cols=156 Identities=10% Similarity=-0.039 Sum_probs=90.9
Q ss_pred ccEEEEEEeCCCCEEEEE--eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 162 GLVKAIIISGDSNKIFTG--HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
-+|..+...+|+...+.. +.+-.|..+|+.............+. .....+.......
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~---------------------~s~ts~ek~vf~~ 159 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLK---------------------NSATSFEKPVFQL 159 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccc---------------------cccchhccccccc
Confidence 456666667776654443 33447888998765432211100000 0001111334456
Q ss_pred EEEEcCCC-CEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeee
Q 012007 240 CLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 240 ~l~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
++.|+|.- ...++...|+.|++..+........--.....+++++|+|.| +++.|-..|++.-|......+....++
T Consensus 160 ~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~P- 238 (1405)
T KOG3630|consen 160 KNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEP- 238 (1405)
T ss_pred cccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCC-
Confidence 78888843 235566778899888775433222212245678999999999 899999999999997653321111111
Q ss_pred eeeccCCccEEEEEEccCCCEEEE
Q 012007 318 QVLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
.......|.+|+|-....++++
T Consensus 239 --p~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 239 --PVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred --CcCCCcceeEEEEecceeEEEE
Confidence 1111578999999877666655
No 415
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.06 E-value=1.9 Score=43.48 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=69.8
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEc--CCC-EEEEEeCCCcEEEEeCccc---CCC
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAG--FDS-LVFTGSADGTVKVWRRELQ---GKG 311 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~--~~~-~l~s~~~dg~i~vwd~~~~---~~~ 311 (473)
.-+.-+.-++..++-+....+.|||.+.+....+-. ...+.|.++.|. |++ .+++.+....|.+|--... ...
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 334444444444444445679999999887544333 357789999985 444 7778888889988853210 111
Q ss_pred cceeeeee--eccCC-ccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 312 TKHCLAQV--LLKHE-NAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 312 ~~~~~~~~--~~~~~-~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
........ +..+. .+|.+..|.++|.+++.+ ++.+.|+|-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 11222221 22333 578899999999877655 357888874
No 416
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.04 E-value=9.2 Score=40.17 Aligned_cols=214 Identities=8% Similarity=0.048 Sum_probs=106.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE-E--EEcCCCCE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC-L--SLNAEQGL 249 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l--~~~~~~~~ 249 (473)
+..|+.++.++.|.-.|..+++..-........... ..........+... ....... + .-...+..
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~-~~~~~cRGvay~~~----------p~~~~~~~~~~~p~~~~~r 262 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG-RQHQTCRGVSYYDA----------PAAAAGPAAPAAPADCARR 262 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc-cccccccceEEecC----------CcccccccccccccccCCE
Confidence 447777888888989998888876655443211100 00000000000000 0000000 0 00013467
Q ss_pred EEEEeCCCCEEEEEcCCCeeeEEeecCCCcee-------------EEEEcC---CCEEEEEeC----------CCcEEEE
Q 012007 250 LYSGSWDKTLKVWRISDCKCLESINAHDDAIN-------------SVVAGF---DSLVFTGSA----------DGTVKVW 303 (473)
Q Consensus 250 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~-------------~l~~~~---~~~l~s~~~----------dg~i~vw 303 (473)
++.++.|+.|.-.|.++|+.+..+... +.|. .+...| ++.+++|+. +|.|+-+
T Consensus 263 V~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 263 IILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 888999999999999999988776421 1110 011111 356666643 6889999
Q ss_pred eCcccCCCcceeee-----------eeeccCCccE-EEEEEccCCCEEEEeCCC------------------CcEEEEec
Q 012007 304 RRELQGKGTKHCLA-----------QVLLKHENAV-TALAVNQESAVVYCGSSD------------------GLVNFWEC 353 (473)
Q Consensus 304 d~~~~~~~~~~~~~-----------~~~~~~~~~v-~~l~~~~~~~~l~~~~~d------------------g~i~iwd~ 353 (473)
|.++++..=..... .........+ ..++++++..+++.+..+ +.|.-.|.
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence 98765431111000 0000000111 345666665555554322 23444455
Q ss_pred CCcccccceee-cCc---------ceEEEEEe-cCC---EEEEEeCCCcEEEEecCCCC
Q 012007 354 EKHLSHGGVLR-GHK---------MAVLCLAA-AGN---LVFSGSADRNICLWRREESG 398 (473)
Q Consensus 354 ~~~~~~~~~~~-~~~---------~~v~~~~~-~~~---~l~s~~~dg~i~iwd~~~~~ 398 (473)
++++..-.... .|. .....+.. +|+ .++.++.+|.+.++|.++++
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 55433211111 121 11223333 453 79999999999999999854
No 417
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.97 E-value=9.4 Score=40.06 Aligned_cols=240 Identities=10% Similarity=0.078 Sum_probs=118.4
Q ss_pred cEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEE
Q 012007 144 NIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEV 223 (473)
Q Consensus 144 ~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (473)
.||+++-......+.. .+.++....+.+...++.++.++.+...++...........
T Consensus 471 ~iRl~ss~~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~---------------------- 527 (1096)
T KOG1897|consen 471 SIRLVSSAGLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHK---------------------- 527 (1096)
T ss_pred cEEEEcchhhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeh----------------------
Confidence 4666665534444443 34455555555666777777777777777665542111111
Q ss_pred eecceeeEeeccCCeeEEEEcCC---C---CEEEEEeCCCCEEEEEcC-CCeeeEEe--ec--CCCceeEEEEcC-CCEE
Q 012007 224 RRNRSVLKIRHYDAVSCLSLNAE---Q---GLLYSGSWDKTLKVWRIS-DCKCLESI--NA--HDDAINSVVAGF-DSLV 291 (473)
Q Consensus 224 ~~~~~~~~~~~~~~v~~l~~~~~---~---~~l~s~s~dg~v~vwd~~-~~~~~~~~--~~--~~~~v~~l~~~~-~~~l 291 (473)
.....|.|+.++|- . ++++.|.++..+.+.-.- +...+... .. -...|....+-. .++|
T Consensus 528 ---------~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yL 598 (1096)
T KOG1897|consen 528 ---------EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYL 598 (1096)
T ss_pred ---------eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEE
Confidence 14568999999973 2 378999988876665432 33222221 11 112233334434 4489
Q ss_pred EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE
Q 012007 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL 371 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 371 (473)
+++..||.+..|-+..... ...-.+...-...++.--.|+..++.-+.+..|.-..+|..+...............+.
T Consensus 599 lvalgdG~l~~fv~d~~tg--~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c 676 (1096)
T KOG1897|consen 599 LVALGDGALLYFVLDINTG--QLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMC 676 (1096)
T ss_pred EEEcCCceEEEEEEEcccc--eEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhc
Confidence 9999999998886653211 00001111112334444455554443334445555556654432221111111111223
Q ss_pred EEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 372 CLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 372 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
.+..+ +..|+.+. .+.+.+..++.-+. -.++++.- ......+++.+
T Consensus 677 ~f~s~a~~d~l~~~~-~~~l~i~tid~iqk-l~irtvpl-~~~prrI~~q~ 724 (1096)
T KOG1897|consen 677 PFNSDAYPDSLASAN-GGALTIGTIDEIQK-LHIRTVPL-GESPRRICYQE 724 (1096)
T ss_pred ccccccCCceEEEec-CCceEEEEecchhh-cceeeecC-CCChhheEecc
Confidence 33322 44555555 45677777665221 11222222 23456666665
No 418
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.97 E-value=2.8 Score=39.99 Aligned_cols=107 Identities=8% Similarity=0.100 Sum_probs=59.8
Q ss_pred CCeeEEEEcCCCCEEEEEe-----------CCC-CEEEEEcCC--Cee--eEEeecCCCceeEEEEcCCCEEEEEeCCCc
Q 012007 236 DAVSCLSLNAEQGLLYSGS-----------WDK-TLKVWRISD--CKC--LESINAHDDAINSVVAGFDSLVFTGSADGT 299 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s-----------~dg-~v~vwd~~~--~~~--~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~ 299 (473)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++. ...+.........+++.+++ |+++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 3456789999998776642 223 677776543 332 23333334456788888888 555555543
Q ss_pred EEEEeCcccCCCc-c-eeeeeeecc----CCccEEEEEEccCCCEEEEeC
Q 012007 300 VKVWRRELQGKGT-K-HCLAQVLLK----HENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 300 i~vwd~~~~~~~~-~-~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~ 343 (473)
.++.|........ . ..+...+.. +......++|.|||.+.++-+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4444554322211 1 122222222 234477899999998766544
No 419
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.86 E-value=2 Score=44.45 Aligned_cols=28 Identities=25% Similarity=0.111 Sum_probs=21.7
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
-.|..|.++++|.+|+..|..| |.|..+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 3688899999999999988754 555554
No 420
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=4.6 Score=36.11 Aligned_cols=157 Identities=12% Similarity=0.098 Sum_probs=94.1
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec--CCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA--HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
-.+-+..+.++. ++.+.+.++.-++|.|+.+...-..+.. -.+.-.++.. ..++...+..|.-+.+.|+....
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-sGn~aYVadlddgfLivdvsdps-- 159 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-SGNYAYVADLDDGFLIVDVSDPS-- 159 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-cCCEEEEeeccCcEEEEECCCCC--
Confidence 445566677754 6788888888999999987654333221 1133334444 34466677767777788987432
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcc-eEEEEEecCCEEEEEeCCCcEE
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM-AVLCLAAAGNLVFSGSADRNIC 390 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~s~~~dg~i~ 390 (473)
...+..........-..++.+ |++-+.+..|+-+.+-|+.....+...-.-... .+..+++.+++....-.+--+.
T Consensus 160 -sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvl 236 (370)
T COG5276 160 -SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVL 236 (370)
T ss_pred -CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceE
Confidence 222223333333334566665 667777888999999999876555322221122 5666777666655555555677
Q ss_pred EEecCCCC
Q 012007 391 LWRREESG 398 (473)
Q Consensus 391 iwd~~~~~ 398 (473)
+-|..+..
T Consensus 237 ivd~s~~s 244 (370)
T COG5276 237 IVDVSGPS 244 (370)
T ss_pred EEecCCCC
Confidence 77777643
No 421
>PHA02790 Kelch-like protein; Provisional
Probab=93.85 E-value=4.9 Score=39.94 Aligned_cols=141 Identities=11% Similarity=0.056 Sum_probs=67.1
Q ss_pred CCCEEEEEeCC--CCEEEEEcCCCeee--EEeecCCCceeEEEEcCCCEEEEEeCCC---cEEEEeCcccCCCcceeeee
Q 012007 246 EQGLLYSGSWD--KTLKVWRISDCKCL--ESINAHDDAINSVVAGFDSLVFTGSADG---TVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 246 ~~~~l~s~s~d--g~v~vwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~ 318 (473)
++.+.+.|+.+ ..+..||..+.+-. ..+...... .+++...+...+.|+.++ .+..||.+.. .+....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~----~W~~~~ 392 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVASINNVIYVIGGHSETDTTTEYLLPNHD----QWQFGP 392 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEEECCEEEEecCcCCCCccEEEEeCCCC----EEEeCC
Confidence 56666777653 35788887654322 222211111 122333333555666543 4667887532 222222
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeCC-----CcEEEE
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSAD-----RNICLW 392 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~iw 392 (473)
.+.........++ -++.+.+.| |.+.+||.++..-. ...+............+++..+.||.+ ..|..|
T Consensus 393 ~m~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Y 467 (480)
T PHA02790 393 STYYPHYKSCALV--FGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVY 467 (480)
T ss_pred CCCCccccceEEE--ECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEE
Confidence 2211111112222 345666666 35778887653211 111111122233345678888888754 346677
Q ss_pred ecCC
Q 012007 393 RREE 396 (473)
Q Consensus 393 d~~~ 396 (473)
|..+
T Consensus 468 d~~~ 471 (480)
T PHA02790 468 NNRT 471 (480)
T ss_pred ECCC
Confidence 7665
No 422
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.81 E-value=5.9 Score=40.58 Aligned_cols=104 Identities=12% Similarity=0.051 Sum_probs=67.7
Q ss_pred CCCEEEEEeCCCCEEEEEcCC-------C----e---------eeEEeecCCCceeEEEEc--CCC-EEEEEeCCCcEEE
Q 012007 246 EQGLLYSGSWDKTLKVWRISD-------C----K---------CLESINAHDDAINSVVAG--FDS-LVFTGSADGTVKV 302 (473)
Q Consensus 246 ~~~~l~s~s~dg~v~vwd~~~-------~----~---------~~~~~~~~~~~v~~l~~~--~~~-~l~s~~~dg~i~v 302 (473)
+...|+.+..||.|.+|.+++ . + +...+. -...+++++++ ... +||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 556899999999999997631 1 0 111122 23478889887 444 7777777888888
Q ss_pred EeCcccCCCcceeeeeeeccCCccEEEEEEccCC---C---EEEEeCCCCcEEEEec
Q 012007 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQES---A---VVYCGSSDGLVNFWEC 353 (473)
Q Consensus 303 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~---~l~~~~~dg~i~iwd~ 353 (473)
|-......... ......+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~---~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFY---HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccc---cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 86653211111 11122366678889987643 2 7888999999999887
No 423
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.74 E-value=6 Score=37.06 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=38.9
Q ss_pred cCCEEEEEeCCCcEEEEecCCCCceeEEEE-ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEE
Q 012007 376 AGNLVFSGSADRNICLWRREESGAHSCLAV-LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVK 448 (473)
Q Consensus 376 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~ 448 (473)
.|.+|++.-..+.|....++.......... +......+..|++.||+. ++++-+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-------------Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-------------LYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-------------EEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-------------EEEEECCCCeEe
Confidence 356777777677888888865332222222 344555899999999998 677767788764
No 424
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.67 E-value=4.9 Score=35.80 Aligned_cols=205 Identities=14% Similarity=0.195 Sum_probs=101.0
Q ss_pred EEEecCCEEEEeeC-----CCcEEEeeCCcc---ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEE-eCCCCCeeeE
Q 012007 128 SLAASGDLLYTGSD-----SKNIRVWKNLKE---FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW-KVSRKNASVH 198 (473)
Q Consensus 128 ~~~~~g~~l~tg~~-----dg~i~vwd~~~~---~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw-d~~~~~~~~~ 198 (473)
.+++||.+|+..-. -|.|-|||.... +..+..|.-.-..+.|.+||+.|+.+. |-|..- |....+....
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh
Confidence 57889999887643 378999997643 445667777778899999999888763 334443 2211111000
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCC-----EEEEEcCCCeeeEEe
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT-----LKVWRISDCKCLESI 273 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~-----v~vwd~~~~~~~~~~ 273 (473)
.... .++........+++ +..+-...+.-.|..++..+||..++.+-..|. -.+=-...++.+.-+
T Consensus 198 sMeP------Slvlld~atG~lie---kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~ 268 (366)
T COG3490 198 SMEP------SLVLLDAATGNLIE---KHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFL 268 (366)
T ss_pred hcCc------cEEEEeccccchhh---hccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCccc
Confidence 0000 00000000000000 000000013445777888888776665543332 111112234444333
Q ss_pred ec-------CCCceeEEEEcCC-CEEEEEe-CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC
Q 012007 274 NA-------HDDAINSVVAGFD-SLVFTGS-ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 274 ~~-------~~~~v~~l~~~~~-~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
.. ....|-+|+.+.+ ++++..+ ..+...+||..++.. .. ...-..+..++- ...-+++.+.
T Consensus 269 ~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v-----v~---~a~l~daaGva~--~~~gf~vssg 338 (366)
T COG3490 269 DLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV-----VS---EAALPDAAGVAA--AKGGFAVSSG 338 (366)
T ss_pred CCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE-----Ee---ccccccccccee--ccCceEEecC
Confidence 22 2235667777644 4544444 455678899875431 00 000111222222 3334566677
Q ss_pred CCcEEEEec
Q 012007 345 DGLVNFWEC 353 (473)
Q Consensus 345 dg~i~iwd~ 353 (473)
+|.+.++.-
T Consensus 339 ~G~~~~~s~ 347 (366)
T COG3490 339 QGRIIFYSR 347 (366)
T ss_pred CceEEeccc
Confidence 888888854
No 425
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.60 E-value=7.3 Score=37.54 Aligned_cols=283 Identities=10% Similarity=0.042 Sum_probs=137.3
Q ss_pred CCEEEEeeCCCcEEEeeCCccc-c-----ccccCcccEEEEEEeC-----CCCEEEEEeCCCeEEEEeCCCCCeeeEEee
Q 012007 133 GDLLYTGSDSKNIRVWKNLKEF-S-----GFKSNSGLVKAIIISG-----DSNKIFTGHQDGKIRIWKVSRKNASVHKRV 201 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~~-~-----~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 201 (473)
.+.|++|+..|.++||+....- . .-..-..+|..|+.-. +...||. -.-..+.||.+......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~----- 110 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGT----- 110 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCC-----
Confidence 4689999999999999864211 1 1112346788887632 2234444 45567888877322110
Q ss_pred ccccccceeEeecCCCcceEEEeecceeeEeecc--CCeeEEEEcC----C-CCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 202 GSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY--DAVSCLSLNA----E-QGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~~~----~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
........+. ....|. .....++.-+ . ..++.+-+.||.+.+++-+.....+.+.
T Consensus 111 -------------~~~g~~~~L~-----~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp 172 (418)
T PF14727_consen 111 -------------VEHGNQYQLE-----LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP 172 (418)
T ss_pred -------------cccCcEEEEE-----EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC
Confidence 0000000000 001121 1222233322 1 4688889999999999976554444444
Q ss_pred cCCCceeEEEEcCC-CEEEEEeCCCcEEEEeCcccCCC----------------cceeeeeeeccCCccEEEEE---Ecc
Q 012007 275 AHDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKG----------------TKHCLAQVLLKHENAVTALA---VNQ 334 (473)
Q Consensus 275 ~~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~----------------~~~~~~~~~~~~~~~v~~l~---~~~ 334 (473)
. ---.-.+.+.+. +.+++++.+..+..|....-... .+.........-...+..|. ++.
T Consensus 173 ~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~ 251 (418)
T PF14727_consen 173 D-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSS 251 (418)
T ss_pred C-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCC
Confidence 3 111223344444 47888888888888865311000 00000111111122333333 222
Q ss_pred CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe----cC---CEEEEEeCCCcEEEEecCCCCceeEEEEec
Q 012007 335 ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA----AG---NLVFSGSADRNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 335 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~----~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 407 (473)
....+++-+ ...+.+.+-.........+.........+.. .+ ..++.++.++++.||.=.+ ++..-.
T Consensus 252 ~~~~IvvLg-er~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~-----L~WsA~ 325 (418)
T PF14727_consen 252 SESDIVVLG-ERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT-----LVWSAQ 325 (418)
T ss_pred CCceEEEEe-cceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe-----EEEecC
Confidence 222222222 2345555443322222222222211111111 22 2588899999999996433 222222
Q ss_pred CCCCceeEEEEec--CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 408 GHTGPVKCLAVEE--DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 408 ~h~~~V~~l~~~~--~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
....+| +|.... +-+. +|++-+.+|.+.+-=+.+.....
T Consensus 326 l~~~PV-al~v~~~~~~~G------------~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 326 LPHVPV-ALSVANFNGLKG------------LIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred CCCCCE-EEEecccCCCCc------------eEEEEcCCCcEEEEEeCCCCccc
Confidence 222333 343332 1111 89999999999998887765433
No 426
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=2 Score=40.67 Aligned_cols=104 Identities=10% Similarity=0.097 Sum_probs=70.7
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee----EEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL----ESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~----~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
..++|.++.|++|.+.|++--.|.+|.+++....+.. .+.+.....|...+|....-++..+..| +.+|-..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~--- 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVL--- 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEc---
Confidence 5679999999999999999999999999987433322 2333445568888888776555554443 5566544
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeC
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
...........|...|.-..|.++.+.++.++
T Consensus 141 --pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 141 --PEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred --hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 22223445566777888888888776554443
No 427
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.47 E-value=0.76 Score=40.00 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=51.6
Q ss_pred ccEEEEEecCCEEEEeeCCCcEEEeeCCccccc---------cc-------cCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 124 GHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSG---------FK-------SNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 124 ~~V~~~~~~g~~l~tg~~dg~i~vwd~~~~~~~---------~~-------~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
..+..+..++++|++-+.+|.+++||+.+.... +. .....|..+.++.+|.-|++-+ +|....
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~ 91 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYS 91 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEE
Confidence 355668889999999999999999997643221 11 3557789999998997777654 578899
Q ss_pred EeCCCC
Q 012007 188 WKVSRK 193 (473)
Q Consensus 188 wd~~~~ 193 (473)
|+.+-+
T Consensus 92 y~~~L~ 97 (219)
T PF07569_consen 92 YSPDLG 97 (219)
T ss_pred eccccc
Confidence 987644
No 428
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.24 E-value=0.76 Score=38.40 Aligned_cols=38 Identities=8% Similarity=-0.024 Sum_probs=32.3
Q ss_pred CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 411 GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 411 ~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
..|..++|+|.|- ...++++|+....+|.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl-------~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGL-------GPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCC-------CCCCceEEEEEcCCCeEEEEecCCC
Confidence 3799999999886 4566789999999999999997754
No 429
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.20 E-value=0.42 Score=28.92 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=26.4
Q ss_pred ccEEEEEEccCC---CEEEEeCCCCcEEEEecCCc
Q 012007 325 NAVTALAVNQES---AVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 325 ~~v~~l~~~~~~---~~l~~~~~dg~i~iwd~~~~ 356 (473)
++|.++.|+|+. .+|+.+-.-|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468899999844 58888888899999999853
No 430
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.17 E-value=13 Score=39.13 Aligned_cols=63 Identities=8% Similarity=-0.028 Sum_probs=43.7
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCc--------eeEEEEc-----------------CCCEEEEEeCCCcEE
Q 012007 247 QGLLYSGSWDKTLKVWRISDCKCLESINAHDDA--------INSVVAG-----------------FDSLVFTGSADGTVK 301 (473)
Q Consensus 247 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--------v~~l~~~-----------------~~~~l~s~~~dg~i~ 301 (473)
+..|+.++.++.|.-.|..+|+.+..+...... ...+.+. .++.++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567888888899999999999988877543211 1112221 123788888999999
Q ss_pred EEeCcccC
Q 012007 302 VWRRELQG 309 (473)
Q Consensus 302 vwd~~~~~ 309 (473)
-.|.++++
T Consensus 274 ALDA~TGk 281 (764)
T TIGR03074 274 ALDADTGK 281 (764)
T ss_pred EEECCCCC
Confidence 88887554
No 431
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.16 E-value=6.1 Score=35.41 Aligned_cols=163 Identities=11% Similarity=0.059 Sum_probs=103.0
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecC-CCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH-DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
-...+.++.|+|+.+.|++......-.||=..+|+.++++... -.....|.+..++ ++++--.++.+.++.+..+...
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 4455999999999999999888888888877889999887632 2233456666666 4444455777877776543211
Q ss_pred c---c-eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc--cceeecCc-------ceEEEEEec--
Q 012007 312 T---K-HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH--GGVLRGHK-------MAVLCLAAA-- 376 (473)
Q Consensus 312 ~---~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~-------~~v~~~~~~-- 376 (473)
. . ..........+.....++|.|....|+.+-+-.=+.||........ ......+. ..+..+.++
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCC
Confidence 1 0 1111122222667889999999988888887777777766532211 01111111 112333444
Q ss_pred -CCEEEEEeCCCcEEEEecCC
Q 012007 377 -GNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 377 -~~~l~s~~~dg~i~iwd~~~ 396 (473)
+.+|+-+.+++.+.-.|...
T Consensus 244 ~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 244 TNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CCcEEEEecCCceEEEEecCC
Confidence 67788888888888888765
No 432
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.16 E-value=8.6 Score=37.06 Aligned_cols=146 Identities=19% Similarity=0.228 Sum_probs=80.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-----CC
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-----EQ 247 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~ 247 (473)
...|++|+..|.++||+......... ...+...-..+|..+..-. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~----------------------------~lllE~~l~~PILqv~~G~F~s~~~~ 88 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE----------------------------DLLLETQLKDPILQVECGKFVSGSED 88 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc----------------------------cEEEEEecCCcEEEEEeccccCCCCc
Confidence 45899999999999999855432110 0111112444555555432 22
Q ss_pred CEEEEEeCCCCEEEEEcCC--Ce-------eeEEeecCCC--ceeEEEEcC------CCEEEEEeCCCcEEEEeCcccCC
Q 012007 248 GLLYSGSWDKTLKVWRISD--CK-------CLESINAHDD--AINSVVAGF------DSLVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 248 ~~l~s~s~dg~v~vwd~~~--~~-------~~~~~~~~~~--~v~~l~~~~------~~~l~s~~~dg~i~vwd~~~~~~ 310 (473)
..||+ -.-..+.||.+.. +. .+..+..|.- ....+++.+ ..++.+-+.||.+.+|+-+.
T Consensus 89 ~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~--- 164 (418)
T PF14727_consen 89 LQLAV-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES--- 164 (418)
T ss_pred ceEEE-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc---
Confidence 23333 3446677776621 11 1222222221 122222211 13788899999999998652
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
..... .....--.-.++|.+....+++++.+..|..|...
T Consensus 165 ---~~f~~-~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 165 ---FAFSR-FLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ---EEEEE-EcCCCCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 11111 12222223457888888889999999999998753
No 433
>PLN02153 epithiospecifier protein
Probab=93.08 E-value=7.9 Score=36.45 Aligned_cols=51 Identities=8% Similarity=-0.007 Sum_probs=26.8
Q ss_pred CcEEEEecCCcccccce----eecCcceEEEEEecCCEEEEEeCC--------------CcEEEEecCC
Q 012007 346 GLVNFWECEKHLSHGGV----LRGHKMAVLCLAAAGNLVFSGSAD--------------RNICLWRREE 396 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~l~s~~~d--------------g~i~iwd~~~ 396 (473)
..|.+||..+..-.... .........+...++.+++.|+.. +.|..||..+
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~ 285 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET 285 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc
Confidence 45888888753211111 111112223445567777787742 2567777766
No 434
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.07 E-value=6.3 Score=35.28 Aligned_cols=137 Identities=10% Similarity=-0.008 Sum_probs=76.6
Q ss_pred EEEecCCEEEEee---CCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe-CCCCCeeeEEeecc
Q 012007 128 SLAASGDLLYTGS---DSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK-VSRKNASVHKRVGS 203 (473)
Q Consensus 128 ~~~~~g~~l~tg~---~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~~~~~ 203 (473)
+++++|+.+|.-. ....++++.......... ....+..-.|++++...+....+...+++. ...+.... ..+..
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~-~~v~~ 107 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP-VEVDW 107 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee-EEecc
Confidence 5666666554444 233455554443333322 223677888999986666666566666664 22222111 11110
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe---CCCCEEEEEcC---CC------eeeE
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS---WDKTLKVWRIS---DC------KCLE 271 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s---~dg~v~vwd~~---~~------~~~~ 271 (473)
. .-...|..+.++|||..++... .++.|.+--+. .+ ..+.
T Consensus 108 ~----------------------------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~ 159 (253)
T PF10647_consen 108 P----------------------------GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR 159 (253)
T ss_pred c----------------------------ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE
Confidence 0 0112899999999999887766 34677776553 23 1112
Q ss_pred EeecCCCceeEEEEcCCCEEEEE
Q 012007 272 SINAHDDAINSVVAGFDSLVFTG 294 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~~l~s~ 294 (473)
........+..+.|.+++.|+..
T Consensus 160 ~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 160 VAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred ecccccCcceeeeecCCCEEEEE
Confidence 22233568899999999844433
No 435
>PRK13684 Ycf48-like protein; Provisional
Probab=92.41 E-value=9.6 Score=35.75 Aligned_cols=153 Identities=8% Similarity=0.005 Sum_probs=77.9
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEE-EEcCCCeeeEEe-ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCc
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKV-WRISDCKCLESI-NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~v-wd~~~~~~~~~~-~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
...+.++.+.+++.+++++. .|.+.. +| ..++.-..+ ..-...+.++.+.+++.++..+..|.+.+=..+. + .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~-G--~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDD-L--E 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCC-C--C
Confidence 34678888999887666555 455443 22 122222222 2334678888888888655566777765322221 1 1
Q ss_pred ceeeeeee-ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee--ecCcceEEEEE-ecCCEEEEEeCCCc
Q 012007 313 KHCLAQVL-LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL--RGHKMAVLCLA-AAGNLVFSGSADRN 388 (473)
Q Consensus 313 ~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~-~~~~~l~s~~~dg~ 388 (473)
........ ......+.++.+.+++..++++ .+|.|.. ....+..-.... ..-......+. .+++..+..+..|.
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~ 324 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGV 324 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCce
Confidence 11111111 1122457889999987766555 5665543 233222211111 11111233333 34555566666888
Q ss_pred EEEEec
Q 012007 389 ICLWRR 394 (473)
Q Consensus 389 i~iwd~ 394 (473)
|..|+-
T Consensus 325 il~~~~ 330 (334)
T PRK13684 325 LLRYVG 330 (334)
T ss_pred EEEecC
Confidence 887763
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.35 E-value=3.3 Score=39.93 Aligned_cols=97 Identities=9% Similarity=0.110 Sum_probs=62.9
Q ss_pred EEEeCCCCEEEEEcCC-CeeeEEee----cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc
Q 012007 251 YSGSWDKTLKVWRISD-CKCLESIN----AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN 325 (473)
Q Consensus 251 ~s~s~dg~v~vwd~~~-~~~~~~~~----~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 325 (473)
++|-.+..|.-.|.+- |..+.... .......+..-...|++++++..|-|++||.- .......+.+...
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi------g~rAKtalP~lG~ 604 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI------GKRAKTALPGLGD 604 (776)
T ss_pred EEeecccceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhh------cchhhhcCccccc
Confidence 3444566666666653 32222211 12334455555667899999999999999963 2222344566678
Q ss_pred cEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 326 AVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 326 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
+|..+....+|.++++.+. .++.+-|++
T Consensus 605 aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 605 AIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 8999999999998887765 467777764
No 437
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.35 E-value=3.8 Score=39.53 Aligned_cols=140 Identities=19% Similarity=0.185 Sum_probs=84.3
Q ss_pred CCCEEE-EEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--------EEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 246 EQGLLY-SGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--------LVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 246 ~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--------~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
+..+|+ .|+.-..++-.|++.|+.+..+..|.+. -+.+.|.. .-+.|-.+..|.-.|.+..+. +...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN--Ki~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN--KIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCC--ceee
Confidence 344443 4555667888899999999999988775 45566642 345566666676667775442 1111
Q ss_pred eeeeccCCccEEEEEEc----cCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEE
Q 012007 317 AQVLLKHENAVTALAVN----QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNIC 390 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~ 390 (473)
.. ....++.-.|+ ....++++++..|.|++||.-. ......+.+-...| ..++.+|.++++.+. ..+.
T Consensus 554 ~e----sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yll 627 (776)
T COG5167 554 VE----SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLL 627 (776)
T ss_pred ee----ehhccccccccccccccCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeec-ceEE
Confidence 11 11112222222 2446899999999999999643 22223344444444 445567888877764 4677
Q ss_pred EEecC
Q 012007 391 LWRRE 395 (473)
Q Consensus 391 iwd~~ 395 (473)
+-|+.
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 77765
No 438
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.22 E-value=0.75 Score=27.85 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=25.7
Q ss_pred CCeeEEEEcCCC---CEEEEEeCCCCEEEEEcCC
Q 012007 236 DAVSCLSLNAEQ---GLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 236 ~~v~~l~~~~~~---~~l~s~s~dg~v~vwd~~~ 266 (473)
++|.+++|+|+. .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999843 5888888889999999985
No 439
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.19 E-value=5.4 Score=37.35 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=55.2
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee---eEEe----ecCCCceeEEEEcCC----CEEEEEeC-------CC
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC---LESI----NAHDDAINSVVAGFD----SLVFTGSA-------DG 298 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~---~~~~----~~~~~~v~~l~~~~~----~~l~s~~~-------dg 298 (473)
..+.|+|.|++.+|++ ...|.|++++ ..+.. +..+ .........++++|+ +.|+.... ..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3468999999877664 6699999999 44443 2222 123456788999985 44443333 12
Q ss_pred cEEEEeCcccCC----Ccceeeeeeecc---CCccEEEEEEccCCCEEEEeCC
Q 012007 299 TVKVWRRELQGK----GTKHCLAQVLLK---HENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 299 ~i~vwd~~~~~~----~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
..+|........ .....+...... ....-..|+|.|+|.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 233333322111 011222222222 2334567999999976666544
No 440
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.16 E-value=1 Score=39.17 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=47.2
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe-------e-------cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCc
Q 012007 243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESI-------N-------AHDDAINSVVAGFDSLVFTGSADGTVKVWRRE 306 (473)
Q Consensus 243 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-------~-------~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~ 306 (473)
+..++.+|++.+.+|.+++||+.+++.+..- . .....|..+.+..+|..+..-.+|....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 4457889999999999999999998765432 1 24456777788877854445556888888875
No 441
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.11 E-value=11 Score=35.96 Aligned_cols=194 Identities=11% Similarity=0.090 Sum_probs=83.6
Q ss_pred CCCEEEEEe-CCCCEEEEEcCC----CeeeEEeec---CC----CceeEEEEcCCC-EEEEE--eC----CCcEEEEeCc
Q 012007 246 EQGLLYSGS-WDKTLKVWRISD----CKCLESINA---HD----DAINSVVAGFDS-LVFTG--SA----DGTVKVWRRE 306 (473)
Q Consensus 246 ~~~~l~s~s-~dg~v~vwd~~~----~~~~~~~~~---~~----~~v~~l~~~~~~-~l~s~--~~----dg~i~vwd~~ 306 (473)
+.++|+..+ ..+.|+|.|+.+ .+..+.+.. +. ..-..+...|++ .++++ .. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 678899999873 344444432 11 122233344666 55543 22 2346666654
Q ss_pred ccCCCcceeeeeeec---cCCccEEEEEEccCCCEEEEeCC--------------------CCcEEEEecCCccccccee
Q 012007 307 LQGKGTKHCLAQVLL---KHENAVTALAVNQESAVVYCGSS--------------------DGLVNFWECEKHLSHGGVL 363 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~ 363 (473)
+.+ ...... ....--..+-|.|..+.+++... ...+.+||+.+.+..+.+-
T Consensus 166 tf~------v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id 239 (461)
T PF05694_consen 166 TFE------VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID 239 (461)
T ss_dssp T--------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred ccc------ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence 211 111111 11223456778888788777542 3579999999865554444
Q ss_pred ecCcc-eEEEEEe--c--CCE-EEEEeCCCcEEEEecCCCCceeEEEE--ecC-----C------------CCceeEEEE
Q 012007 364 RGHKM-AVLCLAA--A--GNL-VFSGSADRNICLWRREESGAHSCLAV--LTG-----H------------TGPVKCLAV 418 (473)
Q Consensus 364 ~~~~~-~v~~~~~--~--~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~-----h------------~~~V~~l~~ 418 (473)
.+... ..+.+.+ + ..+ ++.+.-..+|..|-....+.+....+ +.. - ..-|+.|.+
T Consensus 240 Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 240 LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 44332 2333332 3 233 33333444555554432233332222 111 0 245799999
Q ss_pred ecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 419 EEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+.|.+. +.+++=.+|.|+.|||+....
T Consensus 320 SlDDrf------------LYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 320 SLDDRF------------LYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp -TTS-E------------EEEEETTTTEEEEEE-SSTTS
T ss_pred ccCCCE------------EEEEcccCCcEEEEecCCCCC
Confidence 999882 455555799999999998654
No 442
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.00 E-value=5.1 Score=39.48 Aligned_cols=150 Identities=12% Similarity=0.129 Sum_probs=84.0
Q ss_pred CceeEEEEcCCCE-EEEEe--CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC----CCEEEEeCCCCcEEE
Q 012007 278 DAINSVVAGFDSL-VFTGS--ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE----SAVVYCGSSDGLVNF 350 (473)
Q Consensus 278 ~~v~~l~~~~~~~-l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~l~~~~~dg~i~i 350 (473)
.++..++|..... +++.- .+|.+++=|.. ..+.-.-|..+.|.|- ...|++......|.+
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~-------------viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtV 86 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK-------------VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTV 86 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCcc-------------EeeccceeeeeeecCcccCCCCceEEEeccceEEE
Confidence 4778888876553 33321 34444443322 2344456899999984 334555556788999
Q ss_pred EecCCc-ccccceeecC------cceE----EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe
Q 012007 351 WECEKH-LSHGGVLRGH------KMAV----LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE 419 (473)
Q Consensus 351 wd~~~~-~~~~~~~~~~------~~~v----~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~ 419 (473)
|-+.-. ....+.+... ..++ +-|.|....|++-.....-.++++.... ......+ .-.+.|.|.+|.
T Consensus 87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~-srVkaDi-~~~G~IhCACWT 164 (671)
T PF15390_consen 87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS-SRVKADI-KTSGLIHCACWT 164 (671)
T ss_pred EEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC-ceEEEec-cCCceEEEEEec
Confidence 987521 1111111111 1111 2345556677776666555667766532 2333334 346789999999
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.||++ ++++.|..=.-+|||=..
T Consensus 165 ~DG~R------------LVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 165 KDGQR------------LVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CcCCE------------EEEEeCCeEEEEEecCch
Confidence 99984 444444445577888543
No 443
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=91.89 E-value=21 Score=38.54 Aligned_cols=152 Identities=15% Similarity=0.192 Sum_probs=91.3
Q ss_pred EEEEEeC---------CCcEEEEeCcc----cCCC-cceeee-eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 290 LVFTGSA---------DGTVKVWRREL----QGKG-TKHCLA-QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 290 ~l~s~~~---------dg~i~vwd~~~----~~~~-~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
+|++|.. -|.+.++|+-. .++. +...+. ......++.|..++-- +|.++. + ...+|.+|+++
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G~l~~-~-~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RGHLLS-S-QGQKIIVRKLD 1124 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-ccEEEE-c-cCcEEEEEEec
Confidence 6777643 58899999743 1211 111111 2233456677766543 455443 3 34589999994
Q ss_pred Ccccc-cceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec--CCCCceeEEEEecCCCCCcccccC
Q 012007 355 KHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT--GHTGPVKCLAVEEDRDHDHEYHQK 431 (473)
Q Consensus 355 ~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~ 431 (473)
....+ ..-+..-...+.++..-+++|+.|.--..|.+...... ...+..+. ...-.+.++.|--++..
T Consensus 1125 r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqee--p~rlsL~srd~~~l~v~s~EFLVdg~~------- 1195 (1366)
T KOG1896|consen 1125 RDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEE--PYRLSLLSRDFEPLNVYSTEFLVDGSN------- 1195 (1366)
T ss_pred cCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccC--ceEEEEeecCCchhhceeeeeEEcCCe-------
Confidence 43322 22233333444555555889999988888888777652 12222222 22336888999988874
Q ss_pred CCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 432 GDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 432 ~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
..++.+..|+.|+++-.....+
T Consensus 1196 ----L~flvsDa~rNi~vy~Y~Pe~~ 1217 (1366)
T KOG1896|consen 1196 ----LSFLVSDADRNIHVYMYAPENI 1217 (1366)
T ss_pred ----eEEEEEcCCCcEEEEEeCCCCc
Confidence 3789999999999998876543
No 444
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.30 E-value=8.2 Score=36.80 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=65.8
Q ss_pred ceeEEEEcCCCEEEEEeC------------CC-cEEEEeCccc-CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC
Q 012007 279 AINSVVAGFDSLVFTGSA------------DG-TVKVWRRELQ-GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 279 ~v~~l~~~~~~~l~s~~~------------dg-~i~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
....|++.+++.|+++.. .+ .|.+++-..+ ++.. ....+.......+.|++.+++ |+++..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---~~~vfa~~l~~p~Gi~~~~~G--lyV~~~ 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---KSNVFAEELSMVTGLAVAVGG--VYVATP 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---eeEEeecCCCCccceeEecCC--EEEeCC
Confidence 455677777775555532 22 5666643221 1111 112222223456889999888 444555
Q ss_pred CCcEEEEecCCcc-------cccceee------cCcceEEEEEecCCEEEEEeCC-------------------CcEEEE
Q 012007 345 DGLVNFWECEKHL-------SHGGVLR------GHKMAVLCLAAAGNLVFSGSAD-------------------RNICLW 392 (473)
Q Consensus 345 dg~i~iwd~~~~~-------~~~~~~~------~~~~~v~~~~~~~~~l~s~~~d-------------------g~i~iw 392 (473)
....++.|..... .+...+. .|...-..+.++|.+.++-+.. |.|.-+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 4434444553211 1111111 1333346667788766654421 334444
Q ss_pred ecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 393 RREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+..+. .....-.++ .....++|++++.
T Consensus 170 ~pdg~---~~e~~a~G~-rnp~Gl~~d~~G~ 196 (367)
T TIGR02604 170 NPDGG---KLRVVAHGF-QNPYGHSVDSWGD 196 (367)
T ss_pred ecCCC---eEEEEecCc-CCCccceECCCCC
Confidence 44441 111112233 3457899999887
No 445
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.28 E-value=1.7 Score=46.73 Aligned_cols=167 Identities=14% Similarity=0.232 Sum_probs=89.9
Q ss_pred eCCCCEEEEEcCCCeeeEEeecCCCceeEEEE-cCC--------CEEEEEeCCCcEEEEeCcccCCCccee---eeeeec
Q 012007 254 SWDKTLKVWRISDCKCLESINAHDDAINSVVA-GFD--------SLVFTGSADGTVKVWRRELQGKGTKHC---LAQVLL 321 (473)
Q Consensus 254 s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~-~~~--------~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~~ 321 (473)
+-|+.+.+|+.+++.....+.+-...|..+.. -|. .+++..+.--.|.++-+.......... ....+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 34789999999998888888777777766643 221 144444455566666544322111110 011222
Q ss_pred cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCcee
Q 012007 322 KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHS 401 (473)
Q Consensus 322 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 401 (473)
.....|.++....+|+.+++| .|| .+|.+.-...- -..+......|++-. .-..+.= .
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~--gWf~~rc~Kiclt~s--------~ls~lvP---------s 233 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAED--GWFGSRCRKICLTKS--------VLSSLVP---------S 233 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccC--chhhcccccccCchh--------HHHHhhh---------h
Confidence 335668888877788877665 455 45543211000 000000111111100 0000000 0
Q ss_pred EEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 402 CLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 402 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.+.....+..+|..|++..... ++++-+..|+|.+|++...
T Consensus 234 ~~~~~~~~~dpI~qi~ID~SR~-------------IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 234 LLSVPGSSKDPIRQITIDNSRN-------------ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hhcCCCCCCCcceeeEeccccc-------------eeeeeccCceEEEEEccCC
Confidence 1111135677899999988877 8999999999999999873
No 446
>PLN02193 nitrile-specifier protein
Probab=91.19 E-value=17 Score=36.05 Aligned_cols=152 Identities=11% Similarity=0.064 Sum_probs=70.6
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCeeeEEeec----CCCceeEEEEcCCCEEEEEeCCC-----cEEEEeCcccCCC
Q 012007 246 EQGLLYSGSWD-----KTLKVWRISDCKCLESINA----HDDAINSVVAGFDSLVFTGSADG-----TVKVWRRELQGKG 311 (473)
Q Consensus 246 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~ 311 (473)
++.+.+.|+.+ ..+.++|+.+.+-...-.. ....-.+++...+.+++.|+.++ .+..||+...
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~--- 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDK--- 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCC---
Confidence 34555666644 3588888877543221110 11111222333344555666543 3566776532
Q ss_pred cceeeeee---eccCCccEEEEEEccCCCEEEEeCCC----CcEEEEecCCcccccc-ee---ecCcceEEEEEecCCEE
Q 012007 312 TKHCLAQV---LLKHENAVTALAVNQESAVVYCGSSD----GLVNFWECEKHLSHGG-VL---RGHKMAVLCLAAAGNLV 380 (473)
Q Consensus 312 ~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~-~~---~~~~~~v~~~~~~~~~l 380 (473)
.+..... ........ .++. -++++++.++.+ ..+.+||+.+..-... .. ........+...+++++
T Consensus 305 -~W~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iy 381 (470)
T PLN02193 305 -KWFHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIV 381 (470)
T ss_pred -EEEeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEE
Confidence 1111111 00111111 1222 256677777655 4588899875322110 00 11112223445567788
Q ss_pred EEEeCC--------------CcEEEEecCCCCceeEEE
Q 012007 381 FSGSAD--------------RNICLWRREESGAHSCLA 404 (473)
Q Consensus 381 ~s~~~d--------------g~i~iwd~~~~~~~~~~~ 404 (473)
+.|+.+ +.+.+||+.+ ..+..+.
T Consensus 382 v~GG~~~~~~~~~~~~~~~~ndv~~~D~~t-~~W~~~~ 418 (470)
T PLN02193 382 IFGGEIAMDPLAHVGPGQLTDGTFALDTET-LQWERLD 418 (470)
T ss_pred EECCccCCccccccCccceeccEEEEEcCc-CEEEEcc
Confidence 888753 2477888876 3344443
No 447
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.11 E-value=3.2 Score=39.35 Aligned_cols=171 Identities=11% Similarity=0.082 Sum_probs=93.9
Q ss_pred eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeecc-CCccEE-EEEEccCCCEEEEeCCCCc
Q 012007 270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK-HENAVT-ALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~-~l~~~~~~~~l~~~~~dg~ 347 (473)
+..+......|..+...|++..+-.-...++.++++........ .+.....+ ....|+ .+..-..|.-+++++.||.
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence 34455556677888889998322222237788888763221111 11111011 001122 1222335666888999999
Q ss_pred EEEE-ecCCcccc----cceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 348 VNFW-ECEKHLSH----GGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 348 i~iw-d~~~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
|.-| |.++.... ...++-....+..+.++ .+-+++-+..|++.++.... .+.+-.-. --..+.-++++|
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~---~~~lL~~~-~~~~~~~~~~Sp 367 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS---EKLLLFER-AYQAPQLVAMSP 367 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeeccc---Ccceehhh-hhcCcceeeeCc
Confidence 9877 55543221 11111122334444444 45677778888888876554 22222111 123567789999
Q ss_pred CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 421 DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
.+. ++++- ..|.++++.+++..+.+
T Consensus 368 ~~~-------------~Ll~e-~~gki~~~~l~Nr~Pei 392 (733)
T COG4590 368 NQA-------------YLLSE-DQGKIRLAQLENRNPEI 392 (733)
T ss_pred ccc-------------hheee-cCCceEEEEecCCCCCc
Confidence 987 56655 45679999998877654
No 448
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.90 E-value=4.3 Score=43.80 Aligned_cols=79 Identities=16% Similarity=0.325 Sum_probs=55.7
Q ss_pred cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCC-------Cccee------------eeeeeccCCccEEEEEEccC
Q 012007 275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK-------GTKHC------------LAQVLLKHENAVTALAVNQE 335 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~~------------~~~~~~~~~~~v~~l~~~~~ 335 (473)
...-.|+|+....+|.++.++.|| .+|.+--... ..+.+ +......+..+|..|++...
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 345678899988888888888888 5555421110 00111 11112356789999999999
Q ss_pred CCEEEEeCCCCcEEEEecCC
Q 012007 336 SAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~ 355 (473)
...+++-+..|+|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 99999999999999999865
No 449
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.73 E-value=4.9 Score=43.50 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=43.9
Q ss_pred cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCC
Q 012007 322 KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 322 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
-+..++.+..+......+ .+...+.+.+|+.............+... ..++..++++..||.+.+||...+
T Consensus 196 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 196 LIEYESLQVLYYSPTKIL-IGFNRGLVVIKDRASKYVQSAYLPNGQLE----SRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccccceeeeecCCCcc-eeeeeeeeeehhcccccchhhcccccccC----ccCCceEEEEEecCCEEeeecCCC
Confidence 345556666555444433 34455677777765433322222222211 778999999999999999999874
No 450
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.60 E-value=8.2 Score=37.63 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=25.1
Q ss_pred ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 412 PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 412 ~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.|.+++..+..+ ++++...+|.|.+|++..+
T Consensus 191 ~I~~v~~d~~r~-------------~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 191 KIVQVAVDPSRR-------------LLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp -EEEEEEETTTT-------------EEEEEESSE-EEEEEE-SS
T ss_pred ceeeEEecCCcC-------------EEEEEeCCCcEEEEEEeCC
Confidence 488999988876 8999999999999999863
No 451
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.25 E-value=13 Score=33.34 Aligned_cols=273 Identities=14% Similarity=0.117 Sum_probs=148.4
Q ss_pred cccEEEEEecCCEEEEeeCCCcEEEeeCCcccc----ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 123 EGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFS----GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 123 ~~~V~~~~~~g~~l~tg~~dg~i~vwd~~~~~~----~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
.+-+..+.+.+++.+.+..+.-++|.|....-. .+..-.+--.++.. .|++...+..|.-+.+.|+.+......
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCcee
Confidence 344566778899999999988999999653321 12212244455555 466888888666677889887654322
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee---eEEeec
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC---LESINA 275 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~---~~~~~~ 275 (473)
...... .......++. .|++-+.+.+|+-+.+-|+.+... +....
T Consensus 164 agrya~-----------------------------~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n- 211 (370)
T COG5276 164 AGRYAL-----------------------------PGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN- 211 (370)
T ss_pred eeeecc-----------------------------CCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-
Confidence 221111 1111234444 468888889999999999976432 22222
Q ss_pred CCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc--cEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 276 HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN--AVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 276 ~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
....+.++..+++.-+++... --+.+-|...... .. ..-...... .++.+.. .+++.+....+.-+.+-|+
T Consensus 212 ~g~g~~sv~vsdnr~y~vvy~-egvlivd~s~~ss--p~--~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idi 284 (370)
T COG5276 212 TGPGTYSVSVSDNRAYLVVYD-EGVLIVDVSGPSS--PT--VFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDI 284 (370)
T ss_pred cCCceEEEEecCCeeEEEEcc-cceEEEecCCCCC--ce--EeeccccCCcccccceec--ccceeeeeccccCceeEec
Confidence 223677777776654444333 3345555542111 11 111111111 2222333 4566666666777777777
Q ss_pred CCcccc--cceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccC
Q 012007 354 EKHLSH--GGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQK 431 (473)
Q Consensus 354 ~~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~ 431 (473)
.+.... ...+.........+...+.++..+..+ +..+-+.... +......+....+.+.+.+-+.+
T Consensus 285 snp~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~---s~m~~~~g~~ti~~s~~v~~~~q-------- 352 (370)
T COG5276 285 SNPPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPP---SMMDKRPGRPTIGQSCDVSVDTQ-------- 352 (370)
T ss_pred cCCCCCchhccccCCCccccceEEecCeeEeccCC-ceEEEeCCCh---hhcccccCcceEeeecceEEEee--------
Confidence 653322 111111112334455556777766655 4555555441 11222222222334444444444
Q ss_pred CCccEEEEEeeCCCcEEEEEcC
Q 012007 432 GDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 432 ~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.+.+...++.+.||+..
T Consensus 353 -----~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 353 -----IIYSTDYNGGLSIIEYL 369 (370)
T ss_pred -----EEEEeecCCCEEEEEec
Confidence 68888899999999863
No 452
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.09 E-value=18 Score=34.59 Aligned_cols=16 Identities=6% Similarity=0.262 Sum_probs=10.7
Q ss_pred EEEEecCCEEEEEeCC
Q 012007 371 LCLAAAGNLVFSGSAD 386 (473)
Q Consensus 371 ~~~~~~~~~l~s~~~d 386 (473)
.++..++.+++.|+..
T Consensus 338 ~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 338 VSVSWNNGVLLIGGET 353 (376)
T ss_pred EEEEeCCEEEEEcCCC
Confidence 3556677777777754
No 453
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.00 E-value=11 Score=32.19 Aligned_cols=144 Identities=10% Similarity=0.126 Sum_probs=79.2
Q ss_pred CEEEEEeCCCCEEEEEcC--CCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCC------cEEEE-eCccc--CCC----
Q 012007 248 GLLYSGSWDKTLKVWRIS--DCKCLESINAHDDAINSVVAGFDS-LVFTGSADG------TVKVW-RRELQ--GKG---- 311 (473)
Q Consensus 248 ~~l~s~s~dg~v~vwd~~--~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg------~i~vw-d~~~~--~~~---- 311 (473)
+.|+.+.....|.+|++. ..+.+..+.. -+.|..+.++..| ++++--.+. .+|+| +.+.. +..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555666889999987 3455666664 3788899988777 777764432 45554 22211 000
Q ss_pred --------------cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc---ce--e------ecC
Q 012007 312 --------------TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG---GV--L------RGH 366 (473)
Q Consensus 312 --------------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~--~------~~~ 366 (473)
....+.....+-...+.+++..|-..-|+.|+ ++.+.+|.+....... .. + ..-
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 00001111122345667788777433344554 4578888875432200 00 0 111
Q ss_pred cceEEEEEecCCEEEEEeCCCcEEEEec
Q 012007 367 KMAVLCLAAAGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 367 ~~~v~~~~~~~~~l~s~~~dg~i~iwd~ 394 (473)
......++..+.|+|..+. -.++++.+
T Consensus 187 ~~~p~~v~ic~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAICEGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred CceEEEEEEEeeEEEEecC-CEEEEEEE
Confidence 2234556677889888874 46777655
No 454
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.90 E-value=7.5 Score=37.73 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=50.8
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
.|..+..++.|..++-.+.+|.+.++=.+....-..++..+..|+|-.+.-+..+++.+. .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~--~----------------- 165 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSST--S----------------- 165 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCC--c-----------------
Confidence 467788899999999888888666553332222233333334455544443333333221 1
Q ss_pred eeeeccCCccEEEEEEccCC---CEEEEeCCCCcEEEEecCC
Q 012007 317 AQVLLKHENAVTALAVNQES---AVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~---~~l~~~~~dg~i~iwd~~~ 355 (473)
-.+..++|+|+. ..|..-+.|..|++||+..
T Consensus 166 --------ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 166 --------LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred --------eeeeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 123345566643 4455556667777777654
No 455
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=89.86 E-value=18 Score=34.22 Aligned_cols=212 Identities=11% Similarity=0.087 Sum_probs=88.6
Q ss_pred EEeCCCCEEEEEe-CCC--eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEc
Q 012007 168 IISGDSNKIFTGH-QDG--KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN 244 (473)
Q Consensus 168 ~~s~~~~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 244 (473)
+|.+||+.|+-++ .|| .+.+.|+.+++..+..... . .......++
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~-------------------------------g-~~~~g~~~s 89 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP-------------------------------G-DNTFGGFLS 89 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---------------------------------B-TTT-EE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC-------------------------------C-CCccceEEe
Confidence 5678886655544 454 5667778777654333211 1 111134456
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEE--cCCCEEEEEeC----C-------------------Cc
Q 012007 245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA--GFDSLVFTGSA----D-------------------GT 299 (473)
Q Consensus 245 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~--~~~~~l~s~~~----d-------------------g~ 299 (473)
++.+.++-...+..|+-.|+.+.+....+......+-...| ..++..++|.. | ..
T Consensus 90 ~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~ 169 (386)
T PF14583_consen 90 PDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCR 169 (386)
T ss_dssp TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred cCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence 77777655555568888999888765555555555543443 33343333221 0 11
Q ss_pred EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC----c-EEEEecCCcccccceeecCc-ceE---
Q 012007 300 VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG----L-VNFWECEKHLSHGGVLRGHK-MAV--- 370 (473)
Q Consensus 300 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg----~-i~iwd~~~~~~~~~~~~~~~-~~v--- 370 (473)
|...|+.+++ ...+......+..+.|+|...-++.=|.+| . -+||-+++.......+..+. ..+
T Consensus 170 i~~idl~tG~-------~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gH 242 (386)
T PF14583_consen 170 IFTIDLKTGE-------RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGH 242 (386)
T ss_dssp EEEEETTT---------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEE
T ss_pred EEEEECCCCc-------eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccc
Confidence 2222332111 122333445667788999654444433222 1 36675543221111211121 111
Q ss_pred EEEEecCCEEEE-----EeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 371 LCLAAAGNLVFS-----GSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 371 ~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
--+.++|..|.- ++.+..|.-+|..+++. ..+... .....+-.++|+.
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~~~~~----p~~~H~~ss~Dg~ 295 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RRLMEM----PWCSHFMSSPDGK 295 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-EEEEEE-----SEEEEEE-TTSS
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-eEEEeC----CceeeeEEcCCCC
Confidence 235667765443 22344566777777432 222222 2344566667766
No 456
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.78 E-value=14 Score=32.90 Aligned_cols=156 Identities=7% Similarity=-0.047 Sum_probs=84.5
Q ss_pred ccEEEEEEeCCCCEEEEEeCCC--eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 162 GLVKAIIISGDSNKIFTGHQDG--KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
.-...+.|..+|.++-+.+.-| .|+.+|+.+++......+...- --.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~-------------------------------FgE 93 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY-------------------------------FGE 93 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---------------------------------EE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-------------------------------cce
Confidence 4466788877887888888776 6999999998876555543211 011
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
.++... +++..-.-.++...+||..+.+.+.++.- ...=+.++.. +..|+.......|.++|...... ... +.
T Consensus 94 Git~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~d-g~~Li~SDGS~~L~~~dP~~f~~--~~~-i~- 166 (264)
T PF05096_consen 94 GITILG-DKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTSD-GKRLIMSDGSSRLYFLDPETFKE--VRT-IQ- 166 (264)
T ss_dssp EEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEEC-SSCEEEE-SSSEEEEE-TTT-SE--EEE-EE-
T ss_pred eEEEEC-CEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEcC-CCEEEEECCccceEEECCcccce--EEE-EE-
Confidence 222221 22222333568899999999999988864 3455777743 33566666677899998764322 111 11
Q ss_pred eccCC---ccEEEEEEccCCCEEEEeCCCCcEEEEecCCc
Q 012007 320 LLKHE---NAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 320 ~~~~~---~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 356 (473)
..... ..++.+.|. +|...|=.-....|...|..++
T Consensus 167 V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 167 VTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp -EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred EEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence 11112 234445554 4444443444445555555554
No 457
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=88.97 E-value=27 Score=35.01 Aligned_cols=249 Identities=10% Similarity=0.114 Sum_probs=110.6
Q ss_pred CCEEEEeeCCCcEEEeeCCccc----cccccC-cccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccc
Q 012007 133 GDLLYTGSDSKNIRVWKNLKEF----SGFKSN-SGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPT 206 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~~----~~~~~h-~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 206 (473)
+..++.+..+|.+..-.+...- ....+. .....++.+..+| .+|+.|+.-|.=.++.+...........
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~----- 296 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL----- 296 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----
T ss_pred CCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-----
Confidence 6688888899988877543211 111222 4455677776555 4777777755444444432222222111
Q ss_pred cceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC----CC------EEEEEe---CCCCEEEEEcCCCeeeE--
Q 012007 207 FKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE----QG------LLYSGS---WDKTLKVWRISDCKCLE-- 271 (473)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~------~l~s~s---~dg~v~vwd~~~~~~~~-- 271 (473)
..-++|..+++.+. .. .|++++ .+|.+++..- |-...
T Consensus 297 --------------------------~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~ 348 (504)
T PF10433_consen 297 --------------------------PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGL 348 (504)
T ss_dssp ------------------------------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--
T ss_pred --------------------------cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceee
Confidence 14456777766431 11 555554 5677888753 22222
Q ss_pred E--eecC--CCceeEEEEcC--CCEEEEEeCCCcEEEEeCcccCCCcceeeee--eeccCCccEEEEEEccCCCEEEEeC
Q 012007 272 S--INAH--DDAINSVVAGF--DSLVFTGSADGTVKVWRRELQGKGTKHCLAQ--VLLKHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 272 ~--~~~~--~~~v~~l~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
. ...- -..++.+.... +.+++....+ .-+++.+...+......... .+......+.+-.+. +..++=.+
T Consensus 349 ~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt 425 (504)
T PF10433_consen 349 ELASSELPGVTGIWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT 425 (504)
T ss_dssp EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE
T ss_pred eeeccCCCCceEEEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe
Confidence 1 1111 23344444333 2355555444 44455553100000000000 111112223222222 33333333
Q ss_pred CCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec----CCCCceeEEEEe
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT----GHTGPVKCLAVE 419 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~h~~~V~~l~~~ 419 (473)
. ..|++.+.................|.+.+.++.+++.+-.++.+.++.+..... ...... .....|.|+...
T Consensus 426 ~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~eis~l~i~ 502 (504)
T PF10433_consen 426 P-KGIRLIDLEDGKLTQEWKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNKI--SVSDNDETILELDNEISCLSIE 502 (504)
T ss_dssp S-SEEEEEESSSTSEEEEEE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTEE--EEEEE----EE-SS-EEEEE--
T ss_pred c-CeEEEEECCCCeEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCce--eeeeeccccccCCCceEEEEeC
Confidence 3 347777765543333333345566777788888888888899999999887321 111111 145678888877
Q ss_pred c
Q 012007 420 E 420 (473)
Q Consensus 420 ~ 420 (473)
|
T Consensus 503 p 503 (504)
T PF10433_consen 503 P 503 (504)
T ss_dssp -
T ss_pred C
Confidence 6
No 458
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.90 E-value=16 Score=32.48 Aligned_cols=199 Identities=7% Similarity=0.000 Sum_probs=0.0
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
..++-.+||..-+++...+.|--.|..+|+....--+....-..|...|++-...+.....|.-.|.++. .......
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~---evt~f~l 141 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTL---EVTRFPL 141 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCccc---ceEEeec
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCC
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
....-........|.+.|++-+++...-.=++=-.+..........+..-.-+|..++|..-++.-.++.|-..|... .
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~-~ 220 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA-G 220 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc-C
Q ss_pred ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 399 AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 399 ~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
..+.+..-.+....-..+--+|.+. +-+|....+.+..+|-..
T Consensus 221 ~aev~p~P~~~~~gsRriwsdpig~-------------~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 221 HAEVVPQPNALKAGSRRIWSDPIGR-------------AWITTWGTGSLHRFDPSV 263 (353)
T ss_pred CcceecCCCcccccccccccCccCc-------------EEEeccCCceeeEeCccc
No 459
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.09 E-value=2.8 Score=39.69 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=94.4
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee-EEee-cCCC----cee-EEEEcCCC-EEEEEeCCCcEEEE-e
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL-ESIN-AHDD----AIN-SVVAGFDS-LVFTGSADGTVKVW-R 304 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~-~~~~-~~~~----~v~-~l~~~~~~-~l~s~~~dg~i~vw-d 304 (473)
-...|..+-..|||+.|+.-+. .++.++++.+.... +++- ...+ .|+ .+.....+ .++++..||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 3456778889999999988775 68889988654321 1111 1011 121 11112233 67788889988877 5
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEe
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 384 (473)
.+.++. ........+.-....+..+.-..+.+-+++-+.+|++.++..................+..+++.+.+|++-.
T Consensus 298 vr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~ 376 (733)
T COG4590 298 VRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED 376 (733)
T ss_pred eecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec
Confidence 553332 2222222222223344444444455677888888988887654433332222233556788999999888765
Q ss_pred CCCcEEEEecCC
Q 012007 385 ADRNICLWRREE 396 (473)
Q Consensus 385 ~dg~i~iwd~~~ 396 (473)
.|.|+++.+++
T Consensus 377 -~gki~~~~l~N 387 (733)
T COG4590 377 -QGKIRLAQLEN 387 (733)
T ss_pred -CCceEEEEecC
Confidence 56799998887
No 460
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.94 E-value=25 Score=33.48 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=41.3
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCC-CceeEEEEcCCCEEEEEeCCCcEEEEeCccc
Q 012007 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHD-DAINSVVAGFDSLVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 246 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~ 308 (473)
+|+ ++.++.++.++.+|..+|+.+....... ..+..-....++.++.++.++.+...|..++
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG 173 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTG 173 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCC
Confidence 554 8888889999999998999988877655 1122222233456666666777777766533
No 461
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.74 E-value=17 Score=31.21 Aligned_cols=127 Identities=14% Similarity=0.282 Sum_probs=69.5
Q ss_pred EEecC-CEEEEeeCCCcEEEeeCCcc----ccccccCcccEEEEEEeCCCCEEEEEeCC---C---eEEEE---eCCC-C
Q 012007 129 LAASG-DLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIISGDSNKIFTGHQD---G---KIRIW---KVSR-K 193 (473)
Q Consensus 129 ~~~~g-~~l~tg~~dg~i~vwd~~~~----~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g---~i~vw---d~~~-~ 193 (473)
+...| +.|+.+.....|.+|++... +..|. --+.|..+.++..|+||+|--.+ . .+|+| +... .
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 33345 55555455678999997622 22232 23789999999999999996443 2 55664 3321 1
Q ss_pred -CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 194 -NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 194 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
........+. +.. +...-........+.+.-...+.|++..|-..-|+.|+ ++.+.+|.+...
T Consensus 102 ~~~v~vRiaG~-~v~---------~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 102 NSPVRVRIAGH-RVT---------PSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred CCcEEEEEccc-ccc---------cCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 1111111110 000 00000001123344444667888999988544455665 468999987543
No 462
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=87.73 E-value=31 Score=34.21 Aligned_cols=147 Identities=15% Similarity=0.209 Sum_probs=77.4
Q ss_pred cccEEEEEec-CCEEEEeeCCCcEEEeeCCc--ccccccc-CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 123 EGHIYSLAAS-GDLLYTGSDSKNIRVWKNLK--EFSGFKS-NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 123 ~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~--~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
...|.++.+| ...+..|+.||-. .||..+ .+..-.. ...+|..+..+-.| .|..|+.+| |.+.+.+.......
T Consensus 164 d~~V~aLv~D~~g~lWvgT~dGL~-~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~ 240 (671)
T COG3292 164 DTPVVALVFDANGRLWVGTPDGLS-YFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASNW 240 (671)
T ss_pred CccceeeeeeccCcEEEecCCcce-EEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccccc
Confidence 4557777777 4477888888754 455332 1221112 22566666666566 567777776 66666655221110
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee-eEEeecC-
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC-LESINAH- 276 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~~- 276 (473)
... + ....|..+.-..+| .+..|+..|-.+. ....... +...+.|
T Consensus 241 ~~~--l-----------------------------p~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l 287 (671)
T COG3292 241 GPM--L-----------------------------PSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHL 287 (671)
T ss_pred CCC--C-----------------------------cchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCC
Confidence 000 0 22233333333333 5667776664433 3332222 2222222
Q ss_pred -CCceeEEEEcCCCEEEEEeCCCcEEEEeC
Q 012007 277 -DDAINSVVAGFDSLVFTGSADGTVKVWRR 305 (473)
Q Consensus 277 -~~~v~~l~~~~~~~l~s~~~dg~i~vwd~ 305 (473)
-..|+++....++.+-+++.+|.+++-+-
T Consensus 288 ~~S~vnsL~~D~dGsLWv~t~~giv~~~~a 317 (671)
T COG3292 288 GVSTVNSLWLDTDGSLWVGTYGGIVRYLTA 317 (671)
T ss_pred ccccccceeeccCCCEeeeccCceEEEecc
Confidence 24566777777788888888888777553
No 463
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.71 E-value=10 Score=41.10 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=26.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
.....++|++...+++.+...|.|+++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 4566789999999999999999999997543
No 464
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.35 E-value=26 Score=31.87 Aligned_cols=135 Identities=13% Similarity=0.139 Sum_probs=73.1
Q ss_pred CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC------CCCcEEEEecCCcccccceeec-----
Q 012007 297 DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS------SDGLVNFWECEKHLSHGGVLRG----- 365 (473)
Q Consensus 297 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~----- 365 (473)
-..|++||.... .+ .....+-.+.|++|.|..+.++++.|. ....+..||+.+..-. .+.+
T Consensus 15 C~~lC~yd~~~~----qW--~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~--~~~~~~s~~ 86 (281)
T PF12768_consen 15 CPGLCLYDTDNS----QW--SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS--SLGGGSSNS 86 (281)
T ss_pred CCEEEEEECCCC----Ee--ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee--ecCCccccc
Confidence 346899997532 11 122223567899999987777777664 3557888998764321 1111
Q ss_pred CcceEEEEEe---cCC-EEEEEe-CCCc--EEEEecCCCCceeEEEE-ecCCCCceeEEEEecC-CCCCcccccCCCccE
Q 012007 366 HKMAVLCLAA---AGN-LVFSGS-ADRN--ICLWRREESGAHSCLAV-LTGHTGPVKCLAVEED-RDHDHEYHQKGDQRW 436 (473)
Q Consensus 366 ~~~~v~~~~~---~~~-~l~s~~-~dg~--i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~~~~~-~~~~~~~~~~~~~~~ 436 (473)
-..++..+.+ ++. +.+.|. .++. |..||-.. +..+.. ..+-...|..+.+-+- ...........+.+.
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~---W~~i~~~~~~~~t~I~~l~~~~l~~~~~~~~~~~~~~~~ 163 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS---WSSIGSDILGSGTTIRGLQVLPLNSSSHDNSSLFDSDQV 163 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCc---eEeccccccCCCCEEEEEEEEeccccccccccccCCCcE
Confidence 1245666655 443 444443 3443 55565433 555554 3333567888887776 211111111234445
Q ss_pred EEEEee
Q 012007 437 TVYSGS 442 (473)
Q Consensus 437 ~l~s~s 442 (473)
++++|.
T Consensus 164 Llv~G~ 169 (281)
T PF12768_consen 164 LLVTGS 169 (281)
T ss_pred EEEEee
Confidence 677766
No 465
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.01 E-value=29 Score=32.27 Aligned_cols=105 Identities=15% Similarity=0.132 Sum_probs=47.4
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCee---eEEeecCCCc--eeEEEEcCCCEEEEEeC-----CCcEEEEeCcccCC
Q 012007 246 EQGLLYSGSWD-----KTLKVWRISDCKC---LESINAHDDA--INSVVAGFDSLVFTGSA-----DGTVKVWRRELQGK 310 (473)
Q Consensus 246 ~~~~l~s~s~d-----g~v~vwd~~~~~~---~~~~~~~~~~--v~~l~~~~~~~l~s~~~-----dg~i~vwd~~~~~~ 310 (473)
++.+++.|+.+ ..+..+|+.+.+- ...+..-..+ -.+++...+.+.+.|+. ...+..||+...
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~-- 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ-- 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCC--
Confidence 44566666654 2466777766542 1222111111 11223333345555553 235777887632
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC----cEEEEecCC
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG----LVNFWECEK 355 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~iwd~~~ 355 (473)
.+.....+... ......+..-++++.+.|+.++ .+.+||.++
T Consensus 150 --~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 150 --EWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred --CeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 22222211111 1111122233566777777654 256788775
No 466
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.98 E-value=37 Score=33.32 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=55.4
Q ss_pred cEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEE
Q 012007 326 AVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405 (473)
Q Consensus 326 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 405 (473)
.|..+..++.|..++..+.+|.+.++=.+. .-....+...+..|+|=. +.+.+ .+.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~r-wG~~s~~eDgk~~v~CRt-----------------~~i~~-----~~ft 161 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKR-WGKNSEFEDGKSTVNCRT-----------------TPVAE-----RFFT 161 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhh-cCccceecCCCceEEEEe-----------------ecccc-----eeec
Confidence 567788999999999999999665543222 222223333333333321 11111 1111
Q ss_pred ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 406 ~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
-.. .-.+..++|+|+.-. |. -|..-+.|..||+|++.+....+..
T Consensus 162 ss~-~ltl~Qa~WHP~S~~--------D~--hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 162 SST-SLTLKQAAWHPSSIL--------DP--HLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred cCC-ceeeeeccccCCccC--------Cc--eEEEEecCcEEEEEecCCcchhhcc
Confidence 111 123566788887620 00 4555667888888888876655443
No 467
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.94 E-value=5.4 Score=23.69 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.4
Q ss_pred CCCCEEEEEe-CCCCEEEEEcCCCeeeEEeec
Q 012007 245 AEQGLLYSGS-WDKTLKVWRISDCKCLESINA 275 (473)
Q Consensus 245 ~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~ 275 (473)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4677777765 578899999999888887765
No 468
>PRK10115 protease 2; Provisional
Probab=85.66 E-value=50 Score=34.59 Aligned_cols=111 Identities=12% Similarity=0.002 Sum_probs=62.3
Q ss_pred ccEEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 162 GLVKAIIISGDSNKIFTGHQD-----GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
-.+..+.|+|||++|+-+... -.|++-|+.++...... ...
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~----------------------------------i~~ 172 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL----------------------------------LDN 172 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc----------------------------------ccC
Confidence 457788999999988865332 34888888766421110 011
Q ss_pred CeeEEEEcCCCCEEEEEeCC------CCEEEEEcCCC--eeeEEeecCCCcee-EEEEcCCC-EEEEE---eCCCcEEEE
Q 012007 237 AVSCLSLNAEQGLLYSGSWD------KTLKVWRISDC--KCLESINAHDDAIN-SVVAGFDS-LVFTG---SADGTVKVW 303 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~d------g~v~vwd~~~~--~~~~~~~~~~~~v~-~l~~~~~~-~l~s~---~~dg~i~vw 303 (473)
.-..++|.+|++.|+-...+ ..|+.+++.++ +-...+........ .+..+.++ +++.. ..++.+.++
T Consensus 173 ~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~ 252 (686)
T PRK10115 173 VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLL 252 (686)
T ss_pred cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEE
Confidence 11458999988766555432 35788888877 33333333222232 22333344 33332 234678888
Q ss_pred eCc
Q 012007 304 RRE 306 (473)
Q Consensus 304 d~~ 306 (473)
+..
T Consensus 253 ~~~ 255 (686)
T PRK10115 253 DAE 255 (686)
T ss_pred ECc
Confidence 864
No 469
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.34 E-value=3 Score=42.23 Aligned_cols=38 Identities=26% Similarity=0.692 Sum_probs=28.8
Q ss_pred CeeEEEEcC----CCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 237 AVSCLSLNA----EQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 237 ~v~~l~~~~----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
.+..++++. +..+|++.+.|+++++||+.+++++....
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 344555555 67899999999999999999999976653
No 470
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.00 E-value=36 Score=32.34 Aligned_cols=197 Identities=16% Similarity=0.187 Sum_probs=102.7
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEc----CCC---EEEEEe-CC---CcEEEEeCcccCCCcc
Q 012007 245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG----FDS---LVFTGS-AD---GTVKVWRRELQGKGTK 313 (473)
Q Consensus 245 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~----~~~---~l~s~~-~d---g~i~vwd~~~~~~~~~ 313 (473)
|...+++....++-+.+||+ .|+.++.+.. +.++.+... -.+ -|+.++ .+ ..|++|.+.... ..
T Consensus 66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~--g~ 140 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT--GE 140 (381)
T ss_dssp GGG-EEEEEETTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT--TE
T ss_pred cccceEEEEeCCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC--Cc
Confidence 35567888888889999998 5666666642 344444321 122 244443 32 469999876311 11
Q ss_pred eeeee----eeccCCccEEEEEEc--c-CCC-EEEEeCCCCcEEEEecCC---cc---cccceeec-CcceEEEEEecCC
Q 012007 314 HCLAQ----VLLKHENAVTALAVN--Q-ESA-VVYCGSSDGLVNFWECEK---HL---SHGGVLRG-HKMAVLCLAAAGN 378 (473)
Q Consensus 314 ~~~~~----~~~~~~~~v~~l~~~--~-~~~-~l~~~~~dg~i~iwd~~~---~~---~~~~~~~~-~~~~v~~~~~~~~ 378 (473)
...+. .+......+..+|+- + ++. +++....+|.+..|.+.. +. ...+.+.. ....-+.+.-...
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETG 220 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTT
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccC
Confidence 11100 011122346777763 3 343 666778889998887742 11 11122222 2222222233366
Q ss_pred EEEEEeCCCcEEEEecCCCC--ceeEEEEecC--CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 379 LVFSGSADRNICLWRREESG--AHSCLAVLTG--HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 379 ~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+|+.|-++.-|.-|+.+... ....+....+ ...-|-.|++-.... ...++|+|.=.+++..||+...
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~---------g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSD---------GKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CC---------C-EEEEEEEGGGTEEEEEESST
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCC---------CCeEEEEEcCCCCeEEEEecCC
Confidence 89999999777777776322 2344444333 345678888765432 2234677777788999999875
Q ss_pred C
Q 012007 455 H 455 (473)
Q Consensus 455 ~ 455 (473)
.
T Consensus 292 ~ 292 (381)
T PF02333_consen 292 P 292 (381)
T ss_dssp T
T ss_pred C
Confidence 4
No 471
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.85 E-value=0.14 Score=48.42 Aligned_cols=137 Identities=12% Similarity=0.122 Sum_probs=86.9
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
...|-+.+.-++.++.+..|..||- .++...... ..+....++|..++ .++.+-..+.+.+||+.... ...+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey---tqqL- 112 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY---TQQL- 112 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh---HHHH-
Confidence 4557777666888888889999984 344443333 23344566776665 56667788999999986321 1111
Q ss_pred eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-CcceEEEEEec-CCEEEEEeCC
Q 012007 318 QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-HKMAVLCLAAA-GNLVFSGSAD 386 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~-~~~l~s~~~d 386 (473)
..-..+.. .-+.|++....++.+...|.+.|++....... ...| |...++++++. ..+.+.++.|
T Consensus 113 E~gg~~s~--sll~wsKg~~el~ig~~~gn~viynhgtsR~i--iv~Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 113 ESGGTSSK--SLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI--IVMGKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred hccCcchH--HHHhhccCCccccccccccceEEEeccchhhh--hhhcccccceeEEEecccceeeecCcH
Confidence 11111222 22788998899999999999999998764332 2334 77777777765 4455555544
No 472
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.38 E-value=6.8 Score=39.72 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=41.2
Q ss_pred ecCCEEEEEeCCCcEEEEecCC----CCceeEEEE--------ecC-----------CCCceeEEEEec----CCCCCcc
Q 012007 375 AAGNLVFSGSADRNICLWRREE----SGAHSCLAV--------LTG-----------HTGPVKCLAVEE----DRDHDHE 427 (473)
Q Consensus 375 ~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~--------~~~-----------h~~~V~~l~~~~----~~~~~~~ 427 (473)
.+...|+.+..||.+....... +........ +.+ -...+..++++. +..
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 231 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDT---- 231 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTT----
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCC----
Confidence 3778888888999988887764 111111100 000 123455566655 333
Q ss_pred cccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+|++.+.|+++|+|++.++..
T Consensus 232 ---------~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 232 ---------FLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp ---------EEEEEETTSEEEEEETTTTCE
T ss_pred ---------EEEEEeCCCeEEEEECCCCeE
Confidence 899999999999999998876
No 473
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=84.38 E-value=38 Score=32.20 Aligned_cols=158 Identities=19% Similarity=0.227 Sum_probs=79.5
Q ss_pred CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc
Q 012007 255 WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
.++.|.+||.++.. +...|. .+..++..+.+++-+..........++...+..|..+..
T Consensus 296 dN~~i~~~d~Rd~n------------~~~~W~---~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L~------ 354 (465)
T KOG2714|consen 296 DNDLIVTEDFRDRN------------TSGNWI---EIAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGSPLG------ 354 (465)
T ss_pred CCceEEEeeccCCC------------ccceEE---EecCCccccceEeeeccccccCCCCeEEEEEEecCCCcc------
Confidence 35678888887654 112221 345566677777777654443345555566666665521
Q ss_pred CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCC-------ceeEEEEec
Q 012007 335 ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESG-------AHSCLAVLT 407 (473)
Q Consensus 335 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~ 407 (473)
++=.+...+.+++|......-......+. ....|+ +.++.-..++..-.|.-+... ....+..+.
T Consensus 355 ---~idv~~~~~~~~~~~~tr~rGm~s~~pg~-~~~~s~----k~l~Le~~~~~~s~~~gNd~~~~gd~~d~~vfi~Kl~ 426 (465)
T KOG2714|consen 355 ---LIDVCSDGGHVRVWNSTRFRGMISTQPGS-TPEASF----KKLALEEGDEFSSMSSGNDSGPVGDGDDQQVFIQKLV 426 (465)
T ss_pred ---eeehhhhCCcceEEeecccccccccCCCC-Cccccc----ceeeehhccccceeeecccccccCCchhhhhhhhhhc
Confidence 33344555678999876432222222211 111111 112222223333333222110 011222222
Q ss_pred -CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 408 -GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 408 -~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
...+.|..+++.-+. ++++=+.+..|.+|.+.+.
T Consensus 427 ~s~~~~i~~ls~gGdR--------------lfv~rs~~~~v~vw~~~~~ 461 (465)
T KOG2714|consen 427 PSAGGLIVRLSSGGDR--------------LFVVRSVESPVTVWEVLEC 461 (465)
T ss_pred cccCCcEEEEecCCee--------------EEEEEeccCceeEEEecCC
Confidence 234567777766554 7888888899999998754
No 474
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.29 E-value=18 Score=28.38 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=59.5
Q ss_pred EEEEEeCCCcEEEEeCcccCCCcc-eeeeeeeccCCccEEEEEEcc-----CCCEEEEeCCCCcEEEEecCCccccccee
Q 012007 290 LVFTGSADGTVKVWRRELQGKGTK-HCLAQVLLKHENAVTALAVNQ-----ESAVVYCGSSDGLVNFWECEKHLSHGGVL 363 (473)
Q Consensus 290 ~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 363 (473)
.|+.++.-|+|.|++......... ......+..-...|++|+-.+ +...|+.|+. ..|..||+...... ..
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~--Fy 88 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDL--FY 88 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchh--hh
Confidence 677788889999998764322111 111223344566778876544 3466777765 57999999864433 22
Q ss_pred ecCcceEEEEEe------cCCEEEEEeCCCcEEEEecCC
Q 012007 364 RGHKMAVLCLAA------AGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 364 ~~~~~~v~~~~~------~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+.-...+.++.. ...++++|+ +..|.-||...
T Consensus 89 ke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G 126 (136)
T PF14781_consen 89 KEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG 126 (136)
T ss_pred hhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence 222334444433 245555555 66777777665
No 475
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.70 E-value=31 Score=30.55 Aligned_cols=135 Identities=12% Similarity=0.116 Sum_probs=69.6
Q ss_pred EEEEEcCCCeeeEEeec-CCCceeEEEEcCCC-EEEEEeC-C--CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc
Q 012007 259 LKVWRISDCKCLESINA-HDDAINSVVAGFDS-LVFTGSA-D--GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN 333 (473)
Q Consensus 259 v~vwd~~~~~~~~~~~~-~~~~v~~l~~~~~~-~l~s~~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 333 (473)
-.+||+.+++.. .+.. ......+-.+.++| ++.+|+. + ..+++++......................-.....-
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 457888776543 2221 22222223456777 5556554 2 357888764311111111111112233444556667
Q ss_pred cCCCEEEEeCCCC-cEEEEecCCccc-ccc--ee-------ecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 334 QESAVVYCGSSDG-LVNFWECEKHLS-HGG--VL-------RGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 334 ~~~~~l~~~~~dg-~i~iwd~~~~~~-~~~--~~-------~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+||+.|+.|+.+. ...+|.-..... ... .+ ...--+.+-+.++|++++.+..+. .|||..+
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~ 198 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKT 198 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCC
Confidence 8999999988875 344554321100 000 11 112234567788999999988654 4567776
No 476
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=83.38 E-value=3.8 Score=21.98 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=15.9
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEe
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVW 148 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vw 148 (473)
.|.+++....+++.+..-+.+|+|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 455666666677777666677665
No 477
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.35 E-value=10 Score=31.58 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=25.6
Q ss_pred ccEEEEEEccCC------CEEEEeCCCCcEEEEecCC
Q 012007 325 NAVTALAVNQES------AVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 325 ~~v~~l~~~~~~------~~l~~~~~dg~i~iwd~~~ 355 (473)
..+.+++|+|.| -+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 4788899999999997654
No 478
>PLN02153 epithiospecifier protein
Probab=83.34 E-value=40 Score=31.65 Aligned_cols=68 Identities=7% Similarity=0.010 Sum_probs=33.9
Q ss_pred CCCEEEEeCCC-----------CcEEEEecCCccccc-ceee---cCcceEEEEEecCCEEEEEeCC-------------
Q 012007 335 ESAVVYCGSSD-----------GLVNFWECEKHLSHG-GVLR---GHKMAVLCLAAAGNLVFSGSAD------------- 386 (473)
Q Consensus 335 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~-~~~~---~~~~~v~~~~~~~~~l~s~~~d------------- 386 (473)
++++++.|+.+ ..|.+||.++..-.. .... ...........++++++.|+.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~ 216 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYES 216 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceec
Confidence 45666666653 247778876532110 0000 1111122334567766665532
Q ss_pred CcEEEEecCCCCceeEE
Q 012007 387 RNICLWRREESGAHSCL 403 (473)
Q Consensus 387 g~i~iwd~~~~~~~~~~ 403 (473)
..|.+||..+ ..+..+
T Consensus 217 ~~v~~yd~~~-~~W~~~ 232 (341)
T PLN02153 217 NAVQFFDPAS-GKWTEV 232 (341)
T ss_pred CceEEEEcCC-CcEEec
Confidence 3588888876 334444
No 479
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.25 E-value=43 Score=31.85 Aligned_cols=193 Identities=19% Similarity=0.280 Sum_probs=100.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCE--
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL-- 249 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-- 249 (473)
...+++...+++-+.+||++...... ...+.. ..-+-...+.+ .++.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~-~~~Gr~----------------------------NNVDvrygf~l--~g~~vD 115 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQS-LPVGRP----------------------------NNVDVRYGFPL--NGKTVD 115 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEE-E-SS-E----------------------------EEEEEEEEEEE--TTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEe-ecCCCc----------------------------ceeeeecceec--CCceEE
Confidence 45678888888889999998764322 111100 01111222333 2222
Q ss_pred EEEEe-CC---CCEEEEEcC--CCeeeEEeec-------CCCceeEEEE--cC-CC--EEEEEeCCCcEEEEeCcccCCC
Q 012007 250 LYSGS-WD---KTLKVWRIS--DCKCLESINA-------HDDAINSVVA--GF-DS--LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 250 l~s~s-~d---g~v~vwd~~--~~~~~~~~~~-------~~~~v~~l~~--~~-~~--~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
|+.++ .+ .+|++|.+. ++. +..+.. ....+..+|. ++ ++ +++....+|.+..|.+...+..
T Consensus 116 lavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g 194 (381)
T PF02333_consen 116 LAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG 194 (381)
T ss_dssp EEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS
T ss_pred EEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC
Confidence 33443 22 458888775 333 333221 1123556664 33 23 7778889999999988654332
Q ss_pred c-ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc-cee---ec--CcceE--EEEEe--cC--C
Q 012007 312 T-KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG-GVL---RG--HKMAV--LCLAA--AG--N 378 (473)
Q Consensus 312 ~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~---~~--~~~~v--~~~~~--~~--~ 378 (473)
. ...++..+. -.+.+..|.......+|+.+-++.-|.-|+.+-..... ..+ .+ ....+ +++-. ++ -
T Consensus 195 ~v~~~lVR~f~-~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gY 273 (381)
T PF02333_consen 195 KVSATLVREFK-VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGY 273 (381)
T ss_dssp SEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EE
T ss_pred cEeeEEEEEec-CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeE
Confidence 2 223334433 34578999999988999999888877777765221111 111 11 11222 33322 33 2
Q ss_pred EEEEEeCCCcEEEEecCCC
Q 012007 379 LVFSGSADRNICLWRREES 397 (473)
Q Consensus 379 ~l~s~~~dg~i~iwd~~~~ 397 (473)
+|++.-.+++..||+....
T Consensus 274 LivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 274 LIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEGGGTEEEEEESSTT
T ss_pred EEEEcCCCCeEEEEecCCC
Confidence 4555556788999998864
No 480
>PRK10115 protease 2; Provisional
Probab=82.37 E-value=68 Score=33.59 Aligned_cols=66 Identities=8% Similarity=0.027 Sum_probs=38.2
Q ss_pred EEEecCCEEEEeeCC-C----cEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCC------CeEEEEeCCCC
Q 012007 128 SLAASGDLLYTGSDS-K----NIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQD------GKIRIWKVSRK 193 (473)
Q Consensus 128 ~~~~~g~~l~tg~~d-g----~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d------g~i~vwd~~~~ 193 (473)
.++++|++|+.+.+. | .|++-|+...........+.-..++|.+|++.|+-...+ ..|+.+++.++
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 456788888776443 2 466667643221111111112569999999877665443 35777777766
No 481
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=81.59 E-value=79 Score=33.77 Aligned_cols=204 Identities=14% Similarity=0.061 Sum_probs=99.5
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcC---C------Ceee---EEeecCCCceeEEEE---cCCCEEEEEeCCCcE
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRIS---D------CKCL---ESINAHDDAINSVVA---GFDSLVFTGSADGTV 300 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~---~------~~~~---~~~~~~~~~v~~l~~---~~~~~l~s~~~dg~i 300 (473)
+.+..+........|+..+.+|.+...... . |..+ ..+......+.++.. .++..++..+.+|.+
T Consensus 535 D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~Gyi 614 (800)
T TIGR01063 535 DFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVV 614 (800)
T ss_pred CeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEE
Confidence 344444444555666666767876665442 1 2222 122222333444443 344588999999999
Q ss_pred EEEeCcccCCCcc-eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc--------ceeecCcceEE
Q 012007 301 KVWRRELQGKGTK-HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG--------GVLRGHKMAVL 371 (473)
Q Consensus 301 ~vwd~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~v~ 371 (473)
+-.++........ ......+.. ...+..+........++..+..|.+..+....-.... ..+. ....+.
T Consensus 615 KRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv 692 (800)
T TIGR01063 615 KKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVV 692 (800)
T ss_pred EEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEE
Confidence 9987753221111 111111222 3444444444444556666777877666543211100 0111 112232
Q ss_pred EEE-e-cCCEEEEEeCCCcEEEEecCCC------CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC
Q 012007 372 CLA-A-AGNLVFSGSADRNICLWRREES------GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 372 ~~~-~-~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~ 443 (473)
++. . ++..++..+..|.++...+..- +.......+....+.+..+....+.. .++..+.
T Consensus 693 ~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~~-------------~v~liT~ 759 (800)
T TIGR01063 693 SLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDD-------------ELMLITS 759 (800)
T ss_pred EEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEEecCCC-------------eEEEEec
Confidence 222 2 3457888888998888765421 11112222333233443433333322 3555567
Q ss_pred CCcEEEEEcCC
Q 012007 444 DKSVKVWRVSE 454 (473)
Q Consensus 444 Dg~v~iW~i~~ 454 (473)
+|.+..+.+.+
T Consensus 760 ~G~~lrf~~~e 770 (800)
T TIGR01063 760 AGKLIRTSVQD 770 (800)
T ss_pred CCeEEEeeHhh
Confidence 88887777664
No 482
>PLN02193 nitrile-specifier protein
Probab=80.93 E-value=62 Score=32.11 Aligned_cols=69 Identities=6% Similarity=0.001 Sum_probs=36.2
Q ss_pred CCCEEEEeCCCC-----cEEEEecCCccccc-ce---eecCcceEEEEEecCCEEEEEeCC----CcEEEEecCCCCcee
Q 012007 335 ESAVVYCGSSDG-----LVNFWECEKHLSHG-GV---LRGHKMAVLCLAAAGNLVFSGSAD----RNICLWRREESGAHS 401 (473)
Q Consensus 335 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~-~~---~~~~~~~v~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~ 401 (473)
++++++.|+.++ .+..||+.+..-.. .. .............++++++.++.+ ..+.+||+.+ ..+.
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t-~~W~ 356 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQ-DKWT 356 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCC-CEEE
Confidence 456666776543 36677776532110 00 001111122334577888877765 4588999887 3344
Q ss_pred EEE
Q 012007 402 CLA 404 (473)
Q Consensus 402 ~~~ 404 (473)
.+.
T Consensus 357 ~~~ 359 (470)
T PLN02193 357 QVE 359 (470)
T ss_pred Eec
Confidence 443
No 483
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.93 E-value=51 Score=32.29 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=61.7
Q ss_pred CCCceeEEEEcCCCEEEEEeC-CCcEEEEeCcccCCCcceeeeeee-ccCCccEEEEEEccCC------CEEEEeC----
Q 012007 276 HDDAINSVVAGFDSLVFTGSA-DGTVKVWRRELQGKGTKHCLAQVL-LKHENAVTALAVNQES------AVVYCGS---- 343 (473)
Q Consensus 276 ~~~~v~~l~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~------~~l~~~~---- 343 (473)
.-..-+.|+|.|++.++.... .|.|++++...........+.... .........|+++|+- .+|+...
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 345678899999997777776 599999975432110100111111 1236778999999874 3444432
Q ss_pred ------CCCcEEEEecCCc----cccccee------ecCcceEEEEEecCCEEEEEeCC
Q 012007 344 ------SDGLVNFWECEKH----LSHGGVL------RGHKMAVLCLAAAGNLVFSGSAD 386 (473)
Q Consensus 344 ------~dg~i~iwd~~~~----~~~~~~~------~~~~~~v~~~~~~~~~l~s~~~d 386 (473)
....|.-|.+... .....++ ..|...-+.+.+||.++++.+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444544311 0011111 24777778888999876655543
No 484
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.60 E-value=14 Score=36.09 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=25.2
Q ss_pred CccEEEEEEccCCCEEEEeCCCCcEEEEecCC
Q 012007 324 ENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 324 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
+..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34589999999889999999999999999964
No 485
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=80.47 E-value=50 Score=30.75 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=33.6
Q ss_pred CCCEEEEeCC-----CCcEEEEecCCcccc-cceeec-CcceEEEEEecCCEEEEEeCCCc----EEEEecCC
Q 012007 335 ESAVVYCGSS-----DGLVNFWECEKHLSH-GGVLRG-HKMAVLCLAAAGNLVFSGSADRN----ICLWRREE 396 (473)
Q Consensus 335 ~~~~l~~~~~-----dg~i~iwd~~~~~~~-~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~----i~iwd~~~ 396 (473)
++.+.+.|+. ...+..||+.+..-. ...+.. ......+...++++.+.|+.++. +.+||..+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 4566666664 235788888753211 111111 11222334567788888876643 56788876
No 486
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=79.99 E-value=8.1 Score=40.07 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=50.9
Q ss_pred CCCCEEEEEcCCCeeeEEeecCCCceeEEEE-cCCC--------EEEEEeCCCcEEEEeCcccCCCcceeee---eeecc
Q 012007 255 WDKTLKVWRISDCKCLESINAHDDAINSVVA-GFDS--------LVFTGSADGTVKVWRRELQGKGTKHCLA---QVLLK 322 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~-~~~~--------~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~ 322 (473)
.|+.+.+|+..++...+.+..-...|..+.. -|.. .++.......+.++-+....+.....+. .....
T Consensus 100 ~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnTgl~vsv 179 (1263)
T COG5308 100 NDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNTGLVVSV 179 (1263)
T ss_pred cCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEecceEEec
Confidence 4788999999877665555443444444432 2210 1111222233333333222211111111 11222
Q ss_pred CCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 323 HENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
..-.|.|+.-+.+|+.+++|-.| +.+|.+.
T Consensus 180 qGinV~civs~e~GrIFf~g~~d--~nvyEl~ 209 (1263)
T COG5308 180 QGINVRCIVSEEDGRIFFGGEND--PNVYELV 209 (1263)
T ss_pred cCceeEEEEeccCCcEEEecCCC--CCeEEEE
Confidence 34568888888899999888777 7777753
No 487
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.28 E-value=27 Score=35.99 Aligned_cols=261 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred cccccCcccEEEEEEeCCCCEEE----EEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIF----TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~----s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
..+..-++.+..+.|..-+.+|. -|+.|.-|.|..............-..|.+.+-+.+..
T Consensus 10 ~~fpt~sg~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s~~~d~s~l~~F~ip~f~dkl~s~~--------------- 74 (1243)
T COG5290 10 STFPTASGDEDELGFDSVGDWIYITCVLGSTDKGIEVAKESSIYDESGLKRFEIPFFPDKLLSFK--------------- 74 (1243)
T ss_pred ccCCCCCCChHHhcccccCceEEEEeecCCCCCCeeeeeeccccchhheeEeccCCcchHhhhhh---------------
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccC
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~ 309 (473)
|-..++.+.|.-++.-++..-.|.+ .....+..+..-.+.|...+|+.|. .+.....+..|.+++.....
T Consensus 75 ---hf~~~~~~~f~~~~gDii~~~~dp~------p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ 145 (1243)
T COG5290 75 ---HFHVLTFEYFLIDEGDIIHLVNDPT------PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDP 145 (1243)
T ss_pred ---hhhhhheeeEEecCCcEEEEEcCCC------cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEeccccc
Q ss_pred CCcceeeeeeeccCCccE-----------------------------------------EEEEEccCCCEEEEeCCCCc-
Q 012007 310 KGTKHCLAQVLLKHENAV-----------------------------------------TALAVNQESAVVYCGSSDGL- 347 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v-----------------------------------------~~l~~~~~~~~l~~~~~dg~- 347 (473)
..........+......| .-+.|--|..+.+++.....
T Consensus 146 ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~p 225 (1243)
T COG5290 146 ISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERP 225 (1243)
T ss_pred cchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceeeecchhccc
Q ss_pred ---EEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCc-----EEEEecCCCCceeEEEEecCCCCceeEEEEe
Q 012007 348 ---VNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRN-----ICLWRREESGAHSCLAVLTGHTGPVKCLAVE 419 (473)
Q Consensus 348 ---i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~ 419 (473)
+++|..+................++|.|+|..+++-+.||. |.++..+. -.+-....-.+....+..++|+
T Consensus 226 rra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG-LrHGef~lr~~~dEk~~~~~wn 304 (1243)
T COG5290 226 RRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG-LRHGEFDLRVGCDEKAFLENWN 304 (1243)
T ss_pred ccceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCC-cccCCccccCCchhhhhhhhhh
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
-... +........|++|...+
T Consensus 305 ~~s~--------------vlav~~~n~~~lwttkN 325 (1243)
T COG5290 305 LLST--------------VLAVAEGNLLKLWTTKN 325 (1243)
T ss_pred HHHH--------------HHHHhhcceEEEEEccc
No 488
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.39 E-value=42 Score=28.71 Aligned_cols=170 Identities=12% Similarity=0.068 Sum_probs=79.2
Q ss_pred CCCEEEEEeC--CCCEEEEEcCCCeeeEEeecCCCcee--EEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec
Q 012007 246 EQGLLYSGSW--DKTLKVWRISDCKCLESINAHDDAIN--SVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 246 ~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~v~--~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
++.++.+.+. ...|++||+.+++.+.+-+-....+. .+.-..+......=.+|.-..+|.++-+. +-. .
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~-----lg~--~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE-----LGR--F 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh-----hcc--c
Confidence 4456666553 34699999999998776553311111 11111222333344577777888763221 111 1
Q ss_pred cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee-cCcceEEE---EEe-cCCEEEEEeCCCcEEEEecCC
Q 012007 322 KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR-GHKMAVLC---LAA-AGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 322 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~---~~~-~~~~l~s~~~dg~i~iwd~~~ 396 (473)
..++.=..++. |+.-|+.+....+++.-|.++......+.. ....+|.. +-+ +|.+.|-.=.+..|...+.++
T Consensus 128 ~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 128 SYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred ccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCC
Confidence 11233344443 455566666566777777654322222111 11122221 111 333333333333333333333
Q ss_pred CCc---------eeEEEEecCCCCceeEEEEecCCCC
Q 012007 397 SGA---------HSCLAVLTGHTGPVKCLAVEEDRDH 424 (473)
Q Consensus 397 ~~~---------~~~~~~~~~h~~~V~~l~~~~~~~~ 424 (473)
+.. ...+..-..|....+.|++.|++..
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r 242 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR 242 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcCCe
Confidence 211 1111222245567889999998863
No 489
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=77.06 E-value=5.9 Score=22.04 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=21.5
Q ss_pred CEEEEEeCCCCEEEEEcCCCeeeEEe
Q 012007 248 GLLYSGSWDKTLKVWRISDCKCLESI 273 (473)
Q Consensus 248 ~~l~s~s~dg~v~vwd~~~~~~~~~~ 273 (473)
..++.++.+|.+..+|.++|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36888889999999999998877553
No 490
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=74.43 E-value=40 Score=26.52 Aligned_cols=106 Identities=13% Similarity=0.198 Sum_probs=62.6
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCC--------eeeEEeecCCCceeEEEEcC---CC---EEEEEeCCCcEEEEeC
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDC--------KCLESINAHDDAINSVVAGF---DS---LVFTGSADGTVKVWRR 305 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~--------~~~~~~~~~~~~v~~l~~~~---~~---~l~s~~~dg~i~vwd~ 305 (473)
.-.|......|++++.-|.|.|++.... ..+..+. -...|++|+..+ +. .|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3456666778888888999999987532 2344444 345677776433 22 555554 567889998
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEcc----CCCEEEEeCCCCcEEEEecCC
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQ----ESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~l~~~~~dg~i~iwd~~~ 355 (473)
..... ...+.-...|.++.+-. ...++++| .+..|.-||.+.
T Consensus 81 ~~N~d-------~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G 126 (136)
T PF14781_consen 81 ENNSD-------LFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEG 126 (136)
T ss_pred ccCch-------hhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCC
Confidence 74221 12233346677776642 23344444 455666666554
No 491
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=74.35 E-value=72 Score=29.41 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=40.1
Q ss_pred CCEEEEeeCCCcEEEeeCCc--cccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCC
Q 012007 133 GDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRK 193 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~ 193 (473)
+++|+.|+++|...+. ..+ ....-..+...|+++...+.-+.|++-+ ....++++++..-
T Consensus 13 ~~~lL~GTe~Gly~~~-~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L 75 (302)
T smart00036 13 GKWLLVGTEEGLYVLN-ISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSAL 75 (302)
T ss_pred CcEEEEEeCCceEEEE-cccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHh
Confidence 4689999999865555 332 1112223567899999998887777654 3345999998543
No 492
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=74.31 E-value=14 Score=21.52 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=21.3
Q ss_pred CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC--CcEEEE
Q 012007 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD--KSVKVW 450 (473)
Q Consensus 408 ~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D--g~v~iW 450 (473)
...+.-....|+||++. ++++...+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~------------i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKY------------IYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSE------------EEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCE------------EEEEecCCCCCCcCEE
Confidence 34556788999999984 66676677 777776
No 493
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=73.94 E-value=1.1e+02 Score=31.42 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=29.3
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
.+.|..|.|.++++.+++.-.+|.|.+||.+..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~ 161 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSEN 161 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecccc
Confidence 577999999999999999999999999999433
No 494
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=72.24 E-value=9.7 Score=22.26 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=23.2
Q ss_pred EEEEEeCCCCEEEEEcCCCeeeEEeec
Q 012007 249 LLYSGSWDKTLKVWRISDCKCLESINA 275 (473)
Q Consensus 249 ~l~s~s~dg~v~vwd~~~~~~~~~~~~ 275 (473)
.++.++.||.|.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466779999999999999999988764
No 495
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=71.98 E-value=94 Score=29.70 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=9.5
Q ss_pred EEecCCEEEEEeCC
Q 012007 373 LAAAGNLVFSGSAD 386 (473)
Q Consensus 373 ~~~~~~~l~s~~~d 386 (473)
...++++++.|+.+
T Consensus 276 ~~~~~~iyv~GG~~ 289 (376)
T PRK14131 276 GYSNGVLLVAGGAN 289 (376)
T ss_pred eeECCEEEEeeccC
Confidence 34567788888754
No 496
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=71.84 E-value=39 Score=33.56 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=81.2
Q ss_pred CCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC
Q 012007 276 HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 276 ~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
....|..+.+...+.+..|+.||-.+ ||.. ..+...........+|..+..+-.++ |.+|+.+| |.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dGL~~-fd~~-----~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDGLSY-FDAG-----RGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCcEEEecCCcceE-Eccc-----cceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhh
Confidence 45678888888888999999888654 4432 11111122222335566666665665 55676665 77777665
Q ss_pred cccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCc
Q 012007 356 HLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQ 434 (473)
Q Consensus 356 ~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~ 434 (473)
.........-....|..+..| ...+..|+..|..+ ......+...+.....--...|.++....++.
T Consensus 235 ~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs----------- 302 (671)
T COG3292 235 WRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS----------- 302 (671)
T ss_pred ccccccCCCCcchheeeeecccCCCEEEeeccccee-EecCCCCccccccccCCccccccceeeccCCC-----------
Confidence 222211222233445555555 44677777766332 23333222222222222234567777777775
Q ss_pred cEEEEEeeCCCcEEE
Q 012007 435 RWTVYSGSLDKSVKV 449 (473)
Q Consensus 435 ~~~l~s~s~Dg~v~i 449 (473)
|-.++.+|.+++
T Consensus 303 ---LWv~t~~giv~~ 314 (671)
T COG3292 303 ---LWVGTYGGIVRY 314 (671)
T ss_pred ---EeeeccCceEEE
Confidence 677777765554
No 497
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.74 E-value=64 Score=27.66 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=20.7
Q ss_pred CCCEEEEEeCC--CeEEEEeCCCCCeeeEEeec
Q 012007 172 DSNKIFTGHQD--GKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 172 ~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~ 202 (473)
+|.++.+.+.- ..|++||+.+++......+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~ 87 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA 87 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC
Confidence 44556665543 36888999888877666655
No 498
>PRK13684 Ycf48-like protein; Provisional
Probab=71.62 E-value=90 Score=29.29 Aligned_cols=154 Identities=9% Similarity=0.050 Sum_probs=82.8
Q ss_pred CCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc
Q 012007 277 DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 277 ~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 356 (473)
...+.++.+.+++.++..+..|.+..- .+.++ ..... ....-...++++.+.++++.++++ ..|.+++=....+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg--~tW~~--~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQ--TAWTP--HQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCC--CeEEE--eeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC
Confidence 456788888888866666777765432 11111 11211 223345678999999999877765 4576654222322
Q ss_pred ccccceeec---CcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccC
Q 012007 357 LSHGGVLRG---HKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQK 431 (473)
Q Consensus 357 ~~~~~~~~~---~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~ 431 (473)
..-...... ....+..+. +++.. +.++.+|.|. ...+.+..++.+.....-....+.+.|..++.
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~-------- 315 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK-------- 315 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc--------
Confidence 211111110 112334443 34554 4555577554 44454444444332122234578888887765
Q ss_pred CCccEEEEEeeCCCcEEEEEc
Q 012007 432 GDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 432 ~~~~~~l~s~s~Dg~v~iW~i 452 (473)
. +..+..|.|.-|+-
T Consensus 316 -----~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 316 -----G-FVLGQRGVLLRYVG 330 (334)
T ss_pred -----e-EEECCCceEEEecC
Confidence 4 44567888887764
No 499
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=71.55 E-value=91 Score=29.31 Aligned_cols=227 Identities=10% Similarity=0.035 Sum_probs=0.0
Q ss_pred EEEecCCEEEEeeCC-CcEEEee---CCccccccccCc--ccEEEEEEeCCCCEEEEEeCC-----------CeEEEEeC
Q 012007 128 SLAASGDLLYTGSDS-KNIRVWK---NLKEFSGFKSNS--GLVKAIIISGDSNKIFTGHQD-----------GKIRIWKV 190 (473)
Q Consensus 128 ~~~~~g~~l~tg~~d-g~i~vwd---~~~~~~~~~~h~--~~V~~l~~s~~~~~l~s~~~d-----------g~i~vwd~ 190 (473)
+...++++.+.|+.. ..+.++| ..+.-..+..-. .........-+++..+.|+.+ ..+..||.
T Consensus 13 ~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~ 92 (346)
T TIGR03547 13 GAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDP 92 (346)
T ss_pred EEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEEC
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE-cCCCCEEEEEeCC-------------
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL-NAEQGLLYSGSWD------------- 256 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~l~s~s~d------------- 256 (473)
.+..-....... ....-..... .-++++.+.|+.+
T Consensus 93 ~~~~W~~~~~~~-------------------------------p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~ 141 (346)
T TIGR03547 93 KKNSWQKLDTRS-------------------------------PVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSA 141 (346)
T ss_pred CCCEEecCCCCC-------------------------------CCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhh
Q ss_pred --------------------------CCEEEEEcCCC--eeeEEeecCCCceeEEEEcCCCEEEEEeCC------CcEEE
Q 012007 257 --------------------------KTLKVWRISDC--KCLESINAHDDAINSVVAGFDSLVFTGSAD------GTVKV 302 (473)
Q Consensus 257 --------------------------g~v~vwd~~~~--~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d------g~i~v 302 (473)
..|.+||..+. ..+..+......-.+++...+.+++.|+.+ ..+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 221 (346)
T TIGR03547 142 ADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQ 221 (346)
T ss_pred cCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEE
Q ss_pred EeCcccCCCcceeeeeeecc-----CCccEEEEEEccCCCEEEEeCCC----------------------CcEEEEecC-
Q 012007 303 WRRELQGKGTKHCLAQVLLK-----HENAVTALAVNQESAVVYCGSSD----------------------GLVNFWECE- 354 (473)
Q Consensus 303 wd~~~~~~~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~l~~~~~d----------------------g~i~iwd~~- 354 (473)
+++.... ..+.....+.. +.......+...++++++.|+.+ ..+.+||.+
T Consensus 222 y~~~~~~--~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~ 299 (346)
T TIGR03547 222 YLFTGGK--LEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN 299 (346)
T ss_pred EEecCCC--ceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecC
Q ss_pred CcccccceeecCcceEEEEEecCCEEEEEeCCC
Q 012007 355 KHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADR 387 (473)
Q Consensus 355 ~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 387 (473)
........+........++..++++++.|+.+.
T Consensus 300 ~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 300 GKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred CcccccCCCCCCceeeEEEEcCCEEEEEeccCC
No 500
>PRK05560 DNA gyrase subunit A; Validated
Probab=70.84 E-value=1.5e+02 Score=31.69 Aligned_cols=158 Identities=11% Similarity=0.030 Sum_probs=78.7
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEc---CC------Ceee---EEeecCCCceeEEEEc---CCCEEEEEeCCCcE
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRI---SD------CKCL---ESINAHDDAINSVVAG---FDSLVFTGSADGTV 300 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~---~~------~~~~---~~~~~~~~~v~~l~~~---~~~~l~s~~~dg~i 300 (473)
+.+..+........|+..+..|.+..... .. |..+ ..+......+.++.+. .+..++..+.+|.+
T Consensus 537 D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~Gyi 616 (805)
T PRK05560 537 DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTV 616 (805)
T ss_pred CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEE
Confidence 34444444445566666666777666543 22 2332 1223233344445554 33488999999999
Q ss_pred EEEeCcccCCCc-ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc--------cceeecCcceEE
Q 012007 301 KVWRRELQGKGT-KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH--------GGVLRGHKMAVL 371 (473)
Q Consensus 301 ~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~v~ 371 (473)
+--++....... .......+.. ...+..+........++..+..|.+..+....-... ...+.. ...+.
T Consensus 617 KRi~l~~~~~~~r~G~~~ikLke-~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv 694 (805)
T PRK05560 617 KKTSLSEFSNIRSNGIIAINLDE-GDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVV 694 (805)
T ss_pred EEEEhHHhhhcccCCceeeccCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEE
Confidence 987764321101 1111112222 334444444444456667777787777665321110 011111 12232
Q ss_pred E-EEec--CCEEEEEeCCCcEEEEecC
Q 012007 372 C-LAAA--GNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 372 ~-~~~~--~~~l~s~~~dg~i~iwd~~ 395 (473)
. +..+ +.+++..+..|.++...+.
T Consensus 695 ~~~~v~~~~~~il~vTk~G~iKr~~l~ 721 (805)
T PRK05560 695 SMDVVREDSQEILTVTENGYGKRTPVS 721 (805)
T ss_pred EEEEEcCCCcEEEEEEeCCeEEEEEHH
Confidence 2 2222 3468888888988877654
Done!