Query 012007
Match_columns 473
No_of_seqs 919 out of 2880
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 19:46:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 6.6E-45 2.3E-49 339.8 38.5 285 114-453 23-320 (321)
2 1vyh_C Platelet-activating fac 100.0 3.8E-45 1.3E-49 353.4 37.4 282 116-452 101-409 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 4.3E-44 1.5E-48 337.4 39.4 286 115-451 47-340 (340)
4 4gqb_B Methylosome protein 50; 100.0 7.3E-44 2.5E-48 335.3 39.7 284 122-456 29-333 (344)
5 2hes_X YDR267CP; beta-propelle 100.0 1.7E-43 5.8E-48 331.8 38.3 298 114-454 5-328 (330)
6 3fm0_A Protein CIAO1; WDR39,SG 100.0 3E-43 1E-47 332.3 39.6 300 114-459 6-340 (345)
7 3frx_A Guanine nucleotide-bind 100.0 7E-43 2.4E-47 326.1 39.0 284 114-455 8-318 (319)
8 2pbi_B Guanine nucleotide-bind 100.0 4.8E-43 1.7E-47 331.9 37.7 289 114-451 55-354 (354)
9 2ynn_A Coatomer subunit beta'; 100.0 1.4E-42 4.9E-47 321.7 39.5 289 114-455 4-303 (304)
10 4g56_B MGC81050 protein; prote 100.0 5.8E-43 2E-47 331.6 37.0 290 121-461 40-350 (357)
11 2xzm_R RACK1; ribosome, transl 100.0 1.9E-42 6.7E-47 326.6 39.0 287 114-455 12-341 (343)
12 4ery_A WD repeat-containing pr 100.0 2.5E-42 8.5E-47 321.5 39.1 286 114-453 14-311 (312)
13 3iz6_a 40S ribosomal protein R 100.0 1.4E-43 4.7E-48 339.2 30.8 295 115-456 58-377 (380)
14 2ynn_A Coatomer subunit beta'; 100.0 1.6E-41 5.5E-46 314.7 35.8 252 153-457 5-262 (304)
15 1nr0_A Actin interacting prote 100.0 7.2E-41 2.5E-45 340.1 39.2 303 115-457 139-570 (611)
16 4aow_A Guanine nucleotide-bind 100.0 2.4E-40 8.2E-45 311.5 39.4 287 114-456 29-339 (340)
17 1erj_A Transcriptional repress 100.0 2.7E-40 9.3E-45 317.8 38.6 294 119-456 60-391 (393)
18 1nr0_A Actin interacting prote 100.0 6.5E-40 2.2E-44 333.1 40.9 287 114-456 50-357 (611)
19 3zwl_B Eukaryotic translation 100.0 1.5E-39 5.1E-44 309.3 39.8 293 111-457 20-349 (369)
20 3dm0_A Maltose-binding peripla 100.0 3.7E-39 1.3E-43 332.7 38.5 285 115-454 374-693 (694)
21 2ymu_A WD-40 repeat protein; u 100.0 6.1E-39 2.1E-43 324.3 38.4 278 114-451 294-577 (577)
22 1sq9_A Antiviral protein SKI8; 100.0 2.6E-39 8.8E-44 311.4 32.7 302 114-455 7-396 (397)
23 1vyh_C Platelet-activating fac 100.0 4.2E-39 1.4E-43 311.1 34.0 258 146-458 92-373 (410)
24 3ei3_B DNA damage-binding prot 100.0 1.9E-38 6.6E-43 303.9 36.2 287 114-454 64-382 (383)
25 4e54_B DNA damage-binding prot 100.0 3E-39 1E-43 314.9 29.0 292 114-457 110-433 (435)
26 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-38 4.1E-43 303.8 31.5 297 119-460 4-367 (372)
27 3ow8_A WD repeat-containing pr 100.0 2.9E-38 9.8E-43 294.8 32.5 251 155-458 26-283 (321)
28 1gxr_A ESG1, transducin-like e 100.0 2.9E-37 9.9E-42 289.8 38.6 279 118-453 46-336 (337)
29 2ymu_A WD-40 repeat protein; u 100.0 1.8E-37 6.3E-42 313.5 39.9 280 114-453 253-538 (577)
30 3k26_A Polycomb protein EED; W 100.0 7.2E-38 2.5E-42 297.5 33.6 289 118-453 13-365 (366)
31 3v7d_B Cell division control p 100.0 3.7E-37 1.3E-41 302.8 39.3 287 115-460 113-427 (464)
32 3gre_A Serine/threonine-protei 100.0 2.9E-38 1E-42 308.2 30.8 297 114-451 53-437 (437)
33 4gqb_B Methylosome protein 50; 100.0 1.5E-37 5.2E-42 292.2 33.0 240 117-396 76-331 (344)
34 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-37 5E-42 303.0 33.6 280 120-460 130-420 (435)
35 4a11_B DNA excision repair pro 100.0 9.7E-37 3.3E-41 294.1 38.8 296 114-458 34-369 (408)
36 4aez_A CDC20, WD repeat-contai 100.0 5.6E-37 1.9E-41 295.6 36.8 287 120-462 88-388 (401)
37 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-36 6.3E-41 296.2 40.9 280 115-458 110-395 (445)
38 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.2E-37 1.4E-41 290.2 34.8 259 153-456 7-285 (345)
39 2pm7_B Protein transport prote 100.0 4.1E-37 1.4E-41 284.0 33.7 253 155-454 3-285 (297)
40 3vl1_A 26S proteasome regulato 100.0 3.8E-37 1.3E-41 298.6 35.2 280 128-454 104-419 (420)
41 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-36 3.8E-41 282.9 36.9 285 114-459 9-301 (313)
42 1got_B GT-beta; complex (GTP-b 100.0 7.1E-37 2.4E-41 288.1 35.9 251 152-457 46-304 (340)
43 4gga_A P55CDC, cell division c 100.0 1.2E-36 4.1E-41 295.1 38.0 280 128-460 110-401 (420)
44 3i2n_A WD repeat-containing pr 100.0 3.5E-37 1.2E-41 291.8 33.5 289 116-456 11-355 (357)
45 2pm9_A Protein WEB1, protein t 100.0 7.9E-38 2.7E-42 302.8 29.6 283 128-459 19-342 (416)
46 2pm9_A Protein WEB1, protein t 100.0 3.3E-38 1.1E-42 305.5 24.6 287 121-455 65-415 (416)
47 3dwl_C Actin-related protein 2 100.0 4.5E-38 1.5E-42 300.6 25.1 292 120-452 8-377 (377)
48 1r5m_A SIR4-interacting protei 100.0 2.5E-36 8.5E-41 292.8 36.1 280 120-456 42-363 (425)
49 2pm7_B Protein transport prote 100.0 1.8E-36 6.1E-41 279.7 33.4 257 116-404 2-293 (297)
50 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.1E-36 2.1E-40 292.5 38.9 280 114-455 150-443 (445)
51 2hes_X YDR267CP; beta-propelle 100.0 3.1E-36 1.1E-40 282.4 35.0 257 153-455 6-281 (330)
52 4ggc_A P55CDC, cell division c 100.0 1.7E-35 5.7E-40 275.7 38.5 276 129-457 31-318 (318)
53 4h5i_A Guanine nucleotide-exch 100.0 6.9E-36 2.4E-40 283.8 35.7 290 124-460 15-349 (365)
54 1r5m_A SIR4-interacting protei 100.0 3.4E-36 1.2E-40 291.8 33.9 293 122-453 107-424 (425)
55 4ery_A WD repeat-containing pr 100.0 6E-36 2E-40 278.3 33.6 250 154-457 16-271 (312)
56 4g56_B MGC81050 protein; prote 100.0 1.3E-36 4.5E-41 288.0 29.1 271 135-457 18-304 (357)
57 3vl1_A 26S proteasome regulato 100.0 4.1E-36 1.4E-40 291.3 33.2 274 128-456 63-367 (420)
58 1gxr_A ESG1, transducin-like e 100.0 8.3E-36 2.9E-40 279.9 34.1 279 127-458 15-300 (337)
59 3bg1_A Protein SEC13 homolog; 100.0 1.5E-36 5.1E-41 282.8 27.6 262 117-411 7-308 (316)
60 3bg1_A Protein SEC13 homolog; 100.0 8.9E-37 3E-41 284.3 25.2 253 156-454 8-293 (316)
61 3iz6_a 40S ribosomal protein R 100.0 1.3E-36 4.4E-41 290.8 26.0 265 144-457 47-332 (380)
62 2pbi_B Guanine nucleotide-bind 100.0 3.5E-35 1.2E-39 277.9 34.5 252 152-458 55-319 (354)
63 1yfq_A Cell cycle arrest prote 100.0 1E-35 3.5E-40 280.1 30.7 277 118-452 6-322 (342)
64 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-35 4.1E-40 279.7 30.4 297 116-456 4-339 (351)
65 3dw8_B Serine/threonine-protei 100.0 1.9E-35 6.4E-40 289.0 32.7 314 121-452 26-444 (447)
66 3frx_A Guanine nucleotide-bind 100.0 6.1E-35 2.1E-39 272.2 33.6 249 154-455 10-268 (319)
67 1erj_A Transcriptional repress 100.0 6.4E-35 2.2E-39 280.3 34.2 238 125-396 125-389 (393)
68 3mkq_A Coatomer beta'-subunit; 100.0 1E-34 3.5E-39 305.3 38.7 290 115-457 5-305 (814)
69 2xzm_R RACK1; ribosome, transl 100.0 1.2E-34 4.3E-39 273.1 33.7 257 153-457 13-288 (343)
70 3mmy_A MRNA export factor; mRN 100.0 5E-35 1.7E-39 277.9 31.2 287 115-456 31-348 (368)
71 2j04_B YDR362CP, TAU91; beta p 100.0 8.4E-36 2.9E-40 294.4 25.3 284 117-455 201-518 (524)
72 3jrp_A Fusion protein of prote 100.0 1.7E-34 5.7E-39 275.6 33.1 255 153-454 3-287 (379)
73 3sfz_A APAF-1, apoptotic pepti 100.0 9.7E-35 3.3E-39 319.0 35.8 290 116-454 608-913 (1249)
74 3v7d_B Cell division control p 100.0 7.5E-34 2.6E-38 279.2 38.3 303 113-452 152-461 (464)
75 1pgu_A Actin interacting prote 100.0 9.9E-34 3.4E-38 288.1 39.1 295 114-460 151-578 (615)
76 2aq5_A Coronin-1A; WD40 repeat 100.0 4.1E-34 1.4E-38 275.7 33.6 280 129-455 40-343 (402)
77 3sfz_A APAF-1, apoptotic pepti 100.0 5.2E-34 1.8E-38 313.3 36.7 290 114-457 648-1037(1249)
78 3jrp_A Fusion protein of prote 100.0 8.5E-34 2.9E-38 270.7 32.0 260 114-405 2-296 (379)
79 2oaj_A Protein SNI1; WD40 repe 100.0 9.6E-34 3.3E-38 298.3 33.9 200 118-358 12-245 (902)
80 2oaj_A Protein SNI1; WD40 repe 100.0 2.4E-33 8E-38 295.4 35.4 317 118-452 146-659 (902)
81 1pgu_A Actin interacting prote 100.0 1.3E-33 4.5E-38 287.2 32.0 286 122-457 17-331 (615)
82 4aow_A Guanine nucleotide-bind 100.0 6.7E-33 2.3E-37 260.6 34.1 252 154-456 31-288 (340)
83 2j04_B YDR362CP, TAU91; beta p 100.0 3.5E-34 1.2E-38 282.9 24.9 266 119-455 129-429 (524)
84 3gre_A Serine/threonine-protei 100.0 4.7E-34 1.6E-38 278.4 24.6 270 130-458 36-363 (437)
85 3mkq_A Coatomer beta'-subunit; 100.0 3.1E-33 1.1E-37 294.0 32.2 252 153-457 5-262 (814)
86 1k8k_C P40, ARP2/3 complex 41 100.0 8.7E-33 3E-37 263.2 32.1 249 157-454 4-274 (372)
87 3k26_A Polycomb protein EED; W 100.0 2.7E-33 9.2E-38 265.9 26.8 256 156-457 13-321 (366)
88 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-33 4.8E-38 272.0 24.5 259 128-453 22-296 (588)
89 3dwl_C Actin-related protein 2 100.0 2.5E-34 8.7E-39 274.6 18.9 250 157-454 7-281 (377)
90 3zwl_B Eukaryotic translation 100.0 7E-32 2.4E-36 256.3 35.0 254 155-458 26-308 (369)
91 3dm0_A Maltose-binding peripla 100.0 2E-32 6.8E-37 282.5 32.8 252 156-456 377-634 (694)
92 1sq9_A Antiviral protein SKI8; 100.0 1.9E-32 6.5E-37 263.4 28.7 257 154-457 9-325 (397)
93 3odt_A Protein DOA1; ubiquitin 100.0 5.4E-32 1.9E-36 251.2 30.6 244 152-458 9-259 (313)
94 3i2n_A WD repeat-containing pr 100.0 1E-32 3.5E-37 261.0 25.9 253 156-458 13-295 (357)
95 4h5i_A Guanine nucleotide-exch 100.0 3.5E-32 1.2E-36 258.2 28.6 243 118-396 68-343 (365)
96 3dw8_B Serine/threonine-protei 100.0 4.6E-32 1.6E-36 265.0 30.2 257 158-457 25-376 (447)
97 1yfq_A Cell cycle arrest prote 100.0 3.4E-32 1.2E-36 256.0 28.1 257 156-458 6-286 (342)
98 3jro_A Fusion protein of prote 100.0 1.2E-32 4.3E-37 285.8 26.9 254 155-455 3-286 (753)
99 3vu4_A KMHSV2; beta-propeller 100.0 5.2E-32 1.8E-36 256.2 28.4 292 116-462 12-344 (355)
100 3lrv_A PRE-mRNA-splicing facto 100.0 3.9E-32 1.3E-36 256.0 27.0 272 130-454 45-333 (343)
101 2xyi_A Probable histone-bindin 100.0 1E-31 3.5E-36 261.2 30.7 264 155-455 122-411 (430)
102 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.4E-31 4.8E-36 261.9 31.8 247 160-456 101-393 (450)
103 1p22_A F-BOX/WD-repeat protein 100.0 4.3E-31 1.5E-35 257.3 34.3 240 156-456 128-367 (435)
104 3jro_A Fusion protein of prote 100.0 2.8E-32 9.6E-37 283.1 26.8 249 116-396 2-285 (753)
105 3ei3_B DNA damage-binding prot 100.0 7.9E-32 2.7E-36 257.9 27.6 251 154-457 66-342 (383)
106 4aez_A CDC20, WD repeat-contai 100.0 8.3E-31 2.8E-35 252.5 33.6 236 122-397 133-381 (401)
107 4e54_B DNA damage-binding prot 100.0 2.1E-31 7.2E-36 259.4 29.2 263 155-458 113-391 (435)
108 4gq1_A NUP37; propeller, trans 100.0 7.1E-32 2.4E-36 259.0 22.2 248 161-453 89-388 (393)
109 3mmy_A MRNA export factor; mRN 100.0 1.4E-30 4.7E-35 247.3 29.2 254 152-458 30-308 (368)
110 2xyi_A Probable histone-bindin 100.0 1.7E-30 5.8E-35 252.6 30.0 251 116-396 121-410 (430)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 6.3E-31 2.2E-35 253.4 25.9 247 115-397 73-343 (402)
112 4gga_A P55CDC, cell division c 100.0 2E-29 6.9E-34 244.3 32.6 236 120-396 144-395 (420)
113 3lrv_A PRE-mRNA-splicing facto 100.0 1.6E-30 5.5E-35 245.0 23.3 236 169-460 44-298 (343)
114 1l0q_A Surface layer protein; 100.0 1E-28 3.5E-33 236.9 35.2 263 134-456 3-277 (391)
115 3vu4_A KMHSV2; beta-propeller 100.0 4.3E-29 1.5E-33 236.2 31.3 241 152-456 10-273 (355)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.3E-29 1.1E-33 245.0 30.7 273 161-452 4-337 (450)
117 2j04_A TAU60, YPL007P, hypothe 100.0 5.7E-31 1.9E-35 253.9 17.6 250 121-443 83-350 (588)
118 2w18_A PALB2, fancn, partner a 100.0 3.5E-30 1.2E-34 233.6 21.6 266 135-452 56-355 (356)
119 3bws_A Protein LP49; two-domai 100.0 1E-28 3.5E-33 240.2 33.2 268 128-454 129-432 (433)
120 4a11_B DNA excision repair pro 100.0 2.7E-28 9.3E-33 234.9 32.1 276 142-459 22-328 (408)
121 4ggc_A P55CDC, cell division c 100.0 1.7E-27 5.9E-32 221.4 33.3 236 120-396 64-315 (318)
122 1l0q_A Surface layer protein; 100.0 1.7E-26 5.9E-31 221.4 35.6 297 114-457 23-345 (391)
123 3f3f_A Nucleoporin SEH1; struc 100.0 6.7E-27 2.3E-31 219.8 29.6 212 232-457 8-252 (351)
124 4gq1_A NUP37; propeller, trans 100.0 5.3E-28 1.8E-32 232.0 21.7 228 129-396 97-389 (393)
125 1nir_A Nitrite reductase; hemo 99.9 5.1E-26 1.8E-30 226.3 28.3 283 126-460 142-464 (543)
126 3bws_A Protein LP49; two-domai 99.9 3.3E-26 1.1E-30 222.6 25.2 242 162-456 123-392 (433)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.6E-25 9E-30 214.5 27.5 244 133-423 143-410 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.8E-25 2.3E-29 211.6 28.3 261 134-455 76-388 (415)
129 2w18_A PALB2, fancn, partner a 99.9 2.2E-25 7.6E-30 202.2 23.0 197 120-353 133-355 (356)
130 1ri6_A Putative isomerase YBHE 99.9 5.1E-24 1.7E-28 200.0 27.6 272 135-454 7-308 (343)
131 3u4y_A Uncharacterized protein 99.9 6.1E-23 2.1E-27 191.9 32.0 275 133-456 10-306 (331)
132 2ojh_A Uncharacterized protein 99.9 1.6E-23 5.4E-28 192.0 23.9 246 138-423 17-284 (297)
133 2ecf_A Dipeptidyl peptidase IV 99.9 4E-23 1.4E-27 214.8 27.0 271 128-454 43-413 (741)
134 1nir_A Nitrite reductase; hemo 99.9 3.9E-22 1.3E-26 198.3 31.0 301 115-457 171-517 (543)
135 1pby_B Quinohemoprotein amine 99.9 1.1E-21 3.7E-26 183.6 27.2 268 134-457 2-313 (337)
136 3hfq_A Uncharacterized protein 99.9 3.2E-21 1.1E-25 181.6 29.6 267 142-454 15-317 (347)
137 3vgz_A Uncharacterized protein 99.9 1.2E-20 4.2E-25 177.8 32.7 265 128-423 47-326 (353)
138 2oit_A Nucleoporin 214KDA; NH2 99.9 2.3E-21 8E-26 187.6 28.3 313 125-462 40-413 (434)
139 1xfd_A DIP, dipeptidyl aminope 99.9 2E-22 7E-27 208.9 21.2 283 128-455 23-394 (723)
140 2z3z_A Dipeptidyl aminopeptida 99.9 3.8E-21 1.3E-25 198.8 25.5 268 133-456 35-393 (706)
141 1k32_A Tricorn protease; prote 99.9 1.4E-20 4.8E-25 202.5 29.4 314 114-456 43-463 (1045)
142 1ri6_A Putative isomerase YBHE 99.9 4E-20 1.4E-24 173.3 28.4 270 122-423 36-335 (343)
143 2z3z_A Dipeptidyl aminopeptida 99.9 8E-21 2.7E-25 196.3 25.6 290 124-456 82-437 (706)
144 2oit_A Nucleoporin 214KDA; NH2 99.9 1E-20 3.5E-25 183.1 23.6 224 143-397 23-279 (434)
145 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-20 4.1E-25 196.1 25.3 287 127-454 114-459 (741)
146 1xfd_A DIP, dipeptidyl aminope 99.9 5E-20 1.7E-24 190.9 29.2 267 127-423 66-422 (723)
147 3vgz_A Uncharacterized protein 99.9 2.1E-19 7E-24 169.3 29.9 240 161-456 40-305 (353)
148 3scy_A Hypothetical bacterial 99.9 4.1E-19 1.4E-23 168.1 32.0 272 135-454 15-337 (361)
149 1k32_A Tricorn protease; prote 99.9 3.7E-20 1.3E-24 199.3 27.6 288 115-454 195-502 (1045)
150 2ojh_A Uncharacterized protein 99.9 6.1E-20 2.1E-24 168.0 23.6 225 178-457 17-261 (297)
151 3o4h_A Acylamino-acid-releasin 99.9 4.9E-20 1.7E-24 186.0 24.0 262 124-453 22-314 (582)
152 1jmx_B Amine dehydrogenase; ox 99.8 2.9E-19 9.9E-24 167.9 24.9 234 166-456 4-327 (349)
153 3u4y_A Uncharacterized protein 99.8 1.3E-18 4.5E-23 162.4 26.1 237 168-457 4-255 (331)
154 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.4E-18 4.8E-23 164.7 26.0 246 161-455 39-342 (365)
155 1pby_B Quinohemoprotein amine 99.8 8.5E-19 2.9E-23 163.8 23.4 236 127-408 39-319 (337)
156 3hfq_A Uncharacterized protein 99.8 6.6E-18 2.3E-22 158.8 28.2 245 127-395 45-316 (347)
157 3pe7_A Oligogalacturonate lyas 99.8 4E-18 1.4E-22 162.9 26.8 284 116-455 23-383 (388)
158 1jmx_B Amine dehydrogenase; ox 99.8 1.5E-18 5.2E-23 163.0 23.5 245 129-407 7-333 (349)
159 1z68_A Fibroblast activation p 99.8 4.6E-19 1.6E-23 183.6 20.4 275 128-454 22-391 (719)
160 3scy_A Hypothetical bacterial 99.8 2.1E-17 7.1E-22 156.4 29.9 271 127-419 55-360 (361)
161 3o4h_A Acylamino-acid-releasin 99.8 8.8E-19 3E-23 176.8 19.0 228 161-452 21-274 (582)
162 1z68_A Fibroblast activation p 99.8 4.4E-18 1.5E-22 176.2 24.1 286 126-456 64-445 (719)
163 2oiz_A Aromatic amine dehydrog 99.8 1.2E-16 4E-21 150.9 27.9 265 141-455 29-335 (361)
164 1q7f_A NHL, brain tumor CG1071 99.8 8.7E-16 3E-20 140.1 30.6 247 158-457 26-283 (286)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.1E-16 7.1E-21 149.7 24.8 241 127-396 45-341 (365)
166 2gop_A Trilobed protease; beta 99.7 1.3E-15 4.5E-20 143.0 28.4 248 132-453 23-330 (347)
167 3azo_A Aminopeptidase; POP fam 99.7 3.6E-16 1.2E-20 160.2 25.4 287 118-452 18-365 (662)
168 3c5m_A Oligogalacturonate lyas 99.7 7.3E-17 2.5E-21 154.4 18.3 286 128-453 42-381 (396)
169 3azo_A Aminopeptidase; POP fam 99.7 3.5E-16 1.2E-20 160.3 23.8 225 131-396 88-369 (662)
170 3fvz_A Peptidyl-glycine alpha- 99.7 2.4E-15 8.4E-20 140.1 27.0 199 234-455 89-323 (329)
171 4a5s_A Dipeptidyl peptidase 4 99.7 2.1E-16 7.1E-21 163.9 21.5 250 128-417 23-370 (740)
172 2dg1_A DRP35, lactonase; beta 99.7 4.6E-15 1.6E-19 138.4 26.4 246 133-423 17-292 (333)
173 1q7f_A NHL, brain tumor CG1071 99.7 2.1E-14 7E-19 131.0 29.5 231 123-396 29-280 (286)
174 4a5s_A Dipeptidyl peptidase 4 99.7 7.6E-16 2.6E-20 159.7 22.0 246 162-456 17-355 (740)
175 3pe7_A Oligogalacturonate lyas 99.7 2.2E-15 7.4E-20 143.8 21.7 251 153-456 22-331 (388)
176 2oiz_A Aromatic amine dehydrog 99.7 2E-14 6.7E-19 135.6 26.1 267 116-423 44-360 (361)
177 2xdw_A Prolyl endopeptidase; a 99.7 4.3E-14 1.5E-18 145.9 30.7 282 126-456 76-416 (710)
178 2z2n_A Virginiamycin B lyase; 99.7 1.5E-12 5.2E-17 119.0 37.8 275 123-455 14-296 (299)
179 3e5z_A Putative gluconolactona 99.7 4.5E-14 1.6E-18 129.4 27.5 242 155-461 21-291 (296)
180 1qks_A Cytochrome CD1 nitrite 99.7 1.4E-13 4.8E-18 136.5 31.9 275 129-455 163-478 (567)
181 2bkl_A Prolyl endopeptidase; m 99.7 2.2E-14 7.5E-19 147.6 25.8 278 125-456 71-399 (695)
182 1rwi_B Serine/threonine-protei 99.6 7.1E-14 2.4E-18 126.1 23.4 237 163-456 25-266 (270)
183 3fvz_A Peptidyl-glycine alpha- 99.6 2.7E-13 9.3E-18 126.2 26.1 243 124-396 24-322 (329)
184 3e5z_A Putative gluconolactona 99.6 2.5E-13 8.4E-18 124.5 24.9 244 116-396 20-286 (296)
185 3no2_A Uncharacterized protein 99.6 4.1E-13 1.4E-17 121.3 24.5 213 172-423 4-225 (276)
186 1yr2_A Prolyl oligopeptidase; 99.6 3.2E-13 1.1E-17 139.9 27.0 279 125-456 110-443 (741)
187 3dsm_A Uncharacterized protein 99.6 7.3E-13 2.5E-17 123.2 26.0 257 141-456 15-303 (328)
188 3c5m_A Oligogalacturonate lyas 99.6 1.6E-14 5.6E-19 137.9 14.9 235 163-456 37-331 (396)
189 2qc5_A Streptogramin B lactona 99.6 4.7E-11 1.6E-15 109.1 36.2 271 124-452 20-298 (300)
190 2dg1_A DRP35, lactonase; beta 99.6 3.5E-12 1.2E-16 118.8 28.9 238 116-387 37-301 (333)
191 2mad_H Methylamine dehydrogena 99.6 1.3E-11 4.6E-16 116.3 33.1 265 144-458 48-354 (373)
192 1rwi_B Serine/threonine-protei 99.6 6.7E-13 2.3E-17 119.6 23.1 228 129-396 31-264 (270)
193 2gop_A Trilobed protease; beta 99.6 1E-12 3.6E-17 123.1 23.9 219 162-454 15-291 (347)
194 2z2n_A Virginiamycin B lyase; 99.5 3.8E-11 1.3E-15 109.7 33.4 239 159-453 12-254 (299)
195 3sjl_D Methylamine dehydrogena 99.5 6.7E-12 2.3E-16 117.0 28.1 280 130-457 41-366 (386)
196 1qks_A Cytochrome CD1 nitrite 99.5 7.6E-11 2.6E-15 116.9 34.5 278 126-408 201-547 (567)
197 2xdw_A Prolyl endopeptidase; a 99.5 7.9E-12 2.7E-16 128.9 28.6 206 234-456 123-370 (710)
198 3dsm_A Uncharacterized protein 99.5 2.3E-11 7.8E-16 113.0 28.4 230 126-395 46-301 (328)
199 3no2_A Uncharacterized protein 99.5 2.1E-11 7.3E-16 110.0 26.0 240 133-417 5-272 (276)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 6.6E-11 2.3E-15 109.0 29.2 242 161-455 17-300 (314)
201 2bkl_A Prolyl endopeptidase; m 99.5 6.4E-12 2.2E-16 129.3 23.3 200 234-453 119-348 (695)
202 3hrp_A Uncharacterized protein 99.5 3.4E-11 1.2E-15 115.1 26.6 233 162-452 131-408 (409)
203 1xip_A Nucleoporin NUP159; bet 99.4 2.5E-12 8.5E-17 120.4 16.6 171 127-341 43-230 (388)
204 3c75_H MADH, methylamine dehyd 99.4 7.7E-11 2.6E-15 111.9 26.7 279 131-458 82-406 (426)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 5.3E-11 1.8E-15 109.6 25.0 234 130-396 26-299 (314)
206 2qc5_A Streptogramin B lactona 99.4 8.6E-10 2.9E-14 100.6 32.8 238 160-453 18-259 (300)
207 3g4e_A Regucalcin; six bladed 99.4 4.9E-10 1.7E-14 102.5 29.7 219 160-423 11-254 (297)
208 1yr2_A Prolyl oligopeptidase; 99.4 5.9E-11 2E-15 122.9 25.1 202 234-453 161-392 (741)
209 3iuj_A Prolyl endopeptidase; h 99.4 9.5E-11 3.2E-15 120.3 25.4 241 160-456 127-407 (693)
210 3g4e_A Regucalcin; six bladed 99.4 5.1E-10 1.8E-14 102.3 26.9 221 133-384 25-260 (297)
211 1xip_A Nucleoporin NUP159; bet 99.4 9.8E-12 3.4E-16 116.3 15.1 180 163-382 39-230 (388)
212 3hrp_A Uncharacterized protein 99.3 1.5E-09 5.2E-14 103.7 28.4 231 125-394 132-408 (409)
213 3dr2_A Exported gluconolactona 99.3 7.5E-10 2.6E-14 101.6 24.2 222 129-387 52-298 (305)
214 2mad_H Methylamine dehydrogena 99.3 6.4E-09 2.2E-13 98.0 30.8 245 116-405 60-356 (373)
215 3dr2_A Exported gluconolactona 99.3 6.4E-10 2.2E-14 102.1 23.3 214 160-423 43-289 (305)
216 3sjl_D Methylamine dehydrogena 99.3 4.8E-10 1.6E-14 104.5 21.9 269 114-421 70-384 (386)
217 2ghs_A AGR_C_1268P; regucalcin 99.3 5.5E-09 1.9E-13 96.8 28.7 213 164-423 51-284 (326)
218 2ghs_A AGR_C_1268P; regucalcin 99.3 4.4E-09 1.5E-13 97.5 26.8 222 128-385 55-291 (326)
219 1mda_H Methylamine dehydrogena 99.2 4.8E-10 1.6E-14 104.7 19.6 260 144-457 47-349 (368)
220 3q7m_A Lipoprotein YFGL, BAMB; 99.2 8.2E-09 2.8E-13 97.7 28.4 288 132-451 52-375 (376)
221 2qe8_A Uncharacterized protein 99.2 4.1E-09 1.4E-13 98.4 25.4 263 124-447 17-314 (343)
222 3hxj_A Pyrrolo-quinoline quino 99.1 9.4E-09 3.2E-13 95.2 22.2 263 125-456 61-326 (330)
223 1yiq_A Quinohemoprotein alcoho 99.1 1.5E-08 5.2E-13 103.4 25.0 281 131-423 119-530 (689)
224 3iuj_A Prolyl endopeptidase; h 99.1 6.7E-09 2.3E-13 106.5 21.6 233 128-397 135-406 (693)
225 2hz6_A Endoplasmic reticulum t 99.1 1.1E-10 3.6E-15 110.3 6.2 202 172-422 8-215 (369)
226 1kb0_A Quinohemoprotein alcoho 99.1 7.3E-08 2.5E-12 98.1 26.9 288 130-423 125-532 (677)
227 2ece_A 462AA long hypothetical 99.0 1.5E-07 5.2E-12 88.4 25.6 226 168-423 88-393 (462)
228 3c75_H MADH, methylamine dehyd 99.0 4.1E-08 1.4E-12 93.1 22.1 253 115-406 111-409 (426)
229 1yiq_A Quinohemoprotein alcoho 99.0 7.6E-08 2.6E-12 98.2 24.5 239 173-461 121-512 (689)
230 1kb0_A Quinohemoprotein alcoho 99.0 9.9E-08 3.4E-12 97.2 24.1 238 172-460 127-513 (677)
231 2ece_A 462AA long hypothetical 99.0 1.7E-07 6E-12 88.0 22.9 220 131-384 93-399 (462)
232 3hxj_A Pyrrolo-quinoline quino 99.0 1.3E-08 4.4E-13 94.2 15.4 251 133-452 30-282 (330)
233 2qe8_A Uncharacterized protein 98.9 2.2E-08 7.7E-13 93.4 16.2 235 162-455 17-279 (343)
234 2hz6_A Endoplasmic reticulum t 98.9 3E-10 1E-14 107.2 2.5 190 246-460 8-198 (369)
235 1mda_H Methylamine dehydrogena 98.9 4.5E-08 1.6E-12 91.3 16.8 256 114-420 57-366 (368)
236 1npe_A Nidogen, entactin; glyc 98.9 3.6E-06 1.2E-10 75.2 28.8 219 162-423 36-263 (267)
237 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1.2E-06 3.9E-11 82.8 25.5 234 173-460 53-302 (376)
238 4a2l_A BT_4663, two-component 98.8 1.6E-05 5.6E-10 82.8 34.8 281 124-454 310-614 (795)
239 4a2l_A BT_4663, two-component 98.8 3.4E-05 1.2E-09 80.4 37.0 282 126-455 175-481 (795)
240 2fp8_A Strictosidine synthase; 98.8 1.8E-06 6.1E-11 79.6 24.0 256 163-457 20-316 (322)
241 2iwa_A Glutamine cyclotransfer 98.8 2.3E-06 7.7E-11 75.5 22.6 200 233-456 16-239 (266)
242 1k3i_A Galactose oxidase precu 98.7 9.1E-07 3.1E-11 90.0 20.2 267 128-443 192-530 (656)
243 1fwx_A Nitrous oxide reductase 98.7 4.2E-06 1.4E-10 81.5 22.9 216 172-423 100-400 (595)
244 1fwx_A Nitrous oxide reductase 98.7 1.5E-05 5E-10 77.7 26.4 270 127-406 90-440 (595)
245 3v9f_A Two-component system se 98.7 5.8E-05 2E-09 78.5 33.0 280 124-455 258-569 (781)
246 1kv9_A Type II quinohemoprotei 98.7 9.3E-06 3.2E-10 82.5 26.2 267 132-408 116-497 (668)
247 2fp8_A Strictosidine synthase; 98.6 1.7E-05 6E-10 72.9 24.9 231 129-396 26-313 (322)
248 1kv9_A Type II quinohemoprotei 98.6 5.4E-06 1.8E-10 84.3 23.1 238 173-460 117-494 (668)
249 3v9f_A Two-component system se 98.6 0.00014 4.7E-09 75.6 33.9 290 124-454 211-524 (781)
250 1npe_A Nidogen, entactin; glyc 98.6 8.2E-05 2.8E-09 66.2 27.7 195 237-456 37-240 (267)
251 2p4o_A Hypothetical protein; p 98.6 0.00022 7.7E-09 64.8 31.1 222 162-423 32-270 (306)
252 3nol_A Glutamine cyclotransfer 98.6 1.3E-05 4.5E-10 69.8 21.1 173 238-423 45-237 (262)
253 2iwa_A Glutamine cyclotransfer 98.6 1.9E-05 6.5E-10 69.5 22.1 194 163-396 22-237 (266)
254 2p4o_A Hypothetical protein; p 98.6 4.1E-05 1.4E-09 69.8 25.3 190 129-355 39-242 (306)
255 2ad6_A Methanol dehydrogenase 98.5 6.5E-05 2.2E-09 74.7 26.7 286 131-423 113-519 (571)
256 3nok_A Glutaminyl cyclase; bet 98.5 9.6E-05 3.3E-09 64.4 23.6 174 237-424 56-248 (268)
257 1w6s_A Methanol dehydrogenase 98.5 9E-05 3.1E-09 73.8 26.4 180 240-423 245-528 (599)
258 3mbr_X Glutamine cyclotransfer 98.4 0.00015 5.1E-09 62.6 23.4 176 236-424 21-217 (243)
259 3nol_A Glutamine cyclotransfer 98.4 6E-05 2.1E-09 65.6 20.5 159 162-359 43-205 (262)
260 2ad6_A Methanol dehydrogenase 98.4 9.4E-05 3.2E-09 73.6 24.9 153 173-359 115-339 (571)
261 1w6s_A Methanol dehydrogenase 98.4 0.00012 4E-09 72.9 24.7 158 167-359 111-346 (599)
262 3tc9_A Hypothetical hydrolase; 98.4 0.00014 4.8E-09 69.6 24.4 152 163-354 138-300 (430)
263 1flg_A Protein (quinoprotein e 98.4 0.00064 2.2E-08 67.7 29.7 180 240-423 250-541 (582)
264 3qqz_A Putative uncharacterize 98.3 0.00044 1.5E-08 60.5 24.1 205 157-394 22-251 (255)
265 2xe4_A Oligopeptidase B; hydro 98.3 8.9E-05 3E-09 76.5 21.8 190 127-353 179-398 (751)
266 3nok_A Glutaminyl cyclase; bet 98.2 5.1E-05 1.7E-09 66.1 16.3 188 114-342 44-252 (268)
267 3v64_C Agrin; beta propeller, 98.2 0.003 1E-07 58.5 29.4 224 135-398 46-277 (349)
268 2xe4_A Oligopeptidase B; hydro 98.2 0.00048 1.7E-08 71.0 26.0 196 163-394 175-398 (751)
269 1k3i_A Galactose oxidase precu 98.2 6.4E-05 2.2E-09 76.4 19.2 239 166-455 190-498 (656)
270 3v65_B Low-density lipoprotein 98.2 0.0021 7.2E-08 60.5 28.4 225 134-398 88-320 (386)
271 2p9w_A MAL S 1 allergenic prot 98.2 0.0014 4.7E-08 59.1 25.4 209 162-396 13-265 (334)
272 2xbg_A YCF48-like protein; pho 98.2 0.0035 1.2E-07 57.5 32.9 270 124-451 36-319 (327)
273 3v64_C Agrin; beta propeller, 98.2 0.0036 1.2E-07 58.0 29.1 196 236-455 73-276 (349)
274 3mbr_X Glutamine cyclotransfer 98.2 0.00033 1.1E-08 60.4 20.2 191 114-344 10-223 (243)
275 2xbg_A YCF48-like protein; pho 98.2 0.0017 5.9E-08 59.5 26.5 230 124-394 80-320 (327)
276 3qqz_A Putative uncharacterize 98.1 0.0021 7.2E-08 56.2 24.7 187 234-423 25-236 (255)
277 1flg_A Protein (quinoprotein e 98.1 0.00043 1.5E-08 68.9 22.8 29 173-201 117-145 (582)
278 3p5b_L Low density lipoprotein 98.1 0.0061 2.1E-07 57.6 31.0 226 135-398 85-322 (400)
279 3v65_B Low-density lipoprotein 98.1 0.0037 1.3E-07 58.7 27.6 197 235-455 115-319 (386)
280 4hw6_A Hypothetical protein, I 98.1 0.0021 7.1E-08 61.5 25.7 153 163-354 140-303 (433)
281 3sov_A LRP-6, low-density lipo 98.0 0.0052 1.8E-07 56.0 26.5 219 143-399 13-241 (318)
282 1ijq_A LDL receptor, low-densi 98.0 0.0078 2.7E-07 54.8 31.2 218 143-398 10-240 (316)
283 1ijq_A LDL receptor, low-densi 98.0 0.0097 3.3E-07 54.2 31.1 200 235-456 29-240 (316)
284 3tc9_A Hypothetical hydrolase; 98.0 0.0039 1.3E-07 59.6 24.8 147 128-306 143-300 (430)
285 2ism_A Putative oxidoreductase 97.9 0.011 3.8E-07 54.7 27.1 226 163-423 32-327 (352)
286 3kya_A Putative phosphatase; s 97.9 0.015 5.2E-07 55.9 27.6 251 163-459 140-480 (496)
287 3p5b_L Low density lipoprotein 97.9 0.019 6.6E-07 54.1 30.3 201 234-456 110-322 (400)
288 3m0c_C LDL receptor, low-densi 97.9 0.03 1E-06 57.6 30.6 226 135-398 397-634 (791)
289 4hw6_A Hypothetical protein, I 97.8 0.0083 2.8E-07 57.3 24.9 188 134-354 153-373 (433)
290 3sov_A LRP-6, low-density lipo 97.8 0.018 6.1E-07 52.4 25.8 196 237-456 36-240 (318)
291 3amr_A 3-phytase; beta-propell 97.8 0.0075 2.6E-07 54.9 21.7 194 246-453 39-262 (355)
292 3amr_A 3-phytase; beta-propell 97.7 0.014 4.6E-07 53.2 22.4 192 133-355 40-263 (355)
293 3m0c_C LDL receptor, low-densi 97.7 0.054 1.9E-06 55.7 29.4 200 234-455 422-633 (791)
294 2g8s_A Glucose/sorbosone dehyd 97.6 0.042 1.4E-06 50.8 25.6 48 376-423 288-335 (353)
295 2vpj_A Kelch-like protein 12; 97.6 0.012 4E-07 53.1 20.7 187 246-455 62-279 (301)
296 2p9w_A MAL S 1 allergenic prot 97.6 0.016 5.5E-07 52.2 20.7 160 236-396 13-215 (334)
297 1n7d_A LDL receptor, low-densi 97.6 0.00082 2.8E-08 68.5 13.9 240 143-420 386-635 (699)
298 3ott_A Two-component system se 97.5 0.11 3.7E-06 53.6 31.5 254 123-423 21-291 (758)
299 2vpj_A Kelch-like protein 12; 97.5 0.036 1.2E-06 49.8 23.3 150 246-403 112-284 (301)
300 2xn4_A Kelch-like protein 2; s 97.5 0.031 1.1E-06 50.2 22.3 187 246-455 61-277 (302)
301 3ei3_A DNA damage-binding prot 97.5 0.17 5.7E-06 54.5 33.8 177 257-455 807-1000(1158)
302 3ii7_A Kelch-like protein 7; p 97.4 0.066 2.2E-06 48.2 26.7 154 246-407 101-282 (306)
303 3ii7_A Kelch-like protein 7; p 97.4 0.035 1.2E-06 50.0 21.2 187 246-455 55-273 (306)
304 1zgk_A Kelch-like ECH-associat 97.4 0.07 2.4E-06 48.1 23.0 152 246-405 121-295 (308)
305 2xn4_A Kelch-like protein 2; s 97.3 0.052 1.8E-06 48.8 21.9 144 246-396 108-276 (302)
306 1n7d_A LDL receptor, low-densi 97.3 0.0019 6.4E-08 65.8 13.2 197 236-454 406-614 (699)
307 2xzh_A Clathrin heavy chain 1; 97.2 0.1 3.5E-06 46.7 28.2 197 241-460 72-296 (365)
308 3pbp_A Nucleoporin NUP82; beta 97.2 0.056 1.9E-06 50.3 20.2 113 237-351 67-208 (452)
309 4a0p_A LRP6, LRP-6, low-densit 97.2 0.24 8.3E-06 49.5 30.6 222 135-398 8-239 (628)
310 3kya_A Putative phosphatase; s 97.1 0.18 6.3E-06 48.4 23.6 200 127-354 144-409 (496)
311 3a9g_A Putative uncharacterize 97.1 0.17 5.7E-06 46.7 29.7 228 162-423 29-324 (354)
312 4a0p_A LRP6, LRP-6, low-densit 97.1 0.27 9.4E-06 49.2 28.8 196 236-456 37-239 (628)
313 3s94_A LRP-6, low-density lipo 97.1 0.29 9.9E-06 48.9 28.6 217 143-397 18-244 (619)
314 1zgk_A Kelch-like ECH-associat 97.0 0.18 6.2E-06 45.4 22.7 187 246-455 70-288 (308)
315 3ei3_A DNA damage-binding prot 96.9 0.61 2.1E-05 50.2 31.3 184 234-423 552-749 (1158)
316 3sre_A PON1, serum paraoxonase 96.9 0.25 8.7E-06 45.3 21.8 181 237-423 51-279 (355)
317 3ott_A Two-component system se 96.8 0.54 1.9E-05 48.3 35.0 272 124-453 146-447 (758)
318 4asc_A Kelch repeat and BTB do 96.7 0.32 1.1E-05 43.8 23.9 152 245-404 44-228 (315)
319 4asc_A Kelch repeat and BTB do 96.7 0.35 1.2E-05 43.6 21.7 144 246-396 98-277 (315)
320 2uvk_A YJHT; unknown function, 96.7 0.22 7.7E-06 45.8 19.9 139 257-397 168-343 (357)
321 2woz_A Kelch repeat and BTB do 96.6 0.39 1.3E-05 43.3 21.1 153 244-404 54-238 (318)
322 1tl2_A L10, protein (tachylect 96.6 0.054 1.8E-06 45.5 13.1 106 238-348 90-203 (236)
323 1bpo_A Protein (clathrin); cla 96.5 0.59 2E-05 43.7 31.5 197 241-460 71-295 (494)
324 2ism_A Putative oxidoreductase 96.4 0.54 1.8E-05 43.2 22.8 104 236-342 31-152 (352)
325 3pbp_A Nucleoporin NUP82; beta 96.4 0.31 1E-05 45.4 18.5 111 244-355 29-158 (452)
326 3sre_A PON1, serum paraoxonase 96.4 0.17 5.7E-06 46.5 16.5 157 279-454 51-252 (355)
327 1tl2_A L10, protein (tachylect 96.0 0.15 5.2E-06 42.8 12.9 110 236-350 41-158 (236)
328 3s94_A LRP-6, low-density lipo 96.0 1.4 4.9E-05 43.9 32.9 191 126-355 42-243 (619)
329 2woz_A Kelch repeat and BTB do 95.9 0.89 3.1E-05 40.9 20.9 144 246-396 109-287 (318)
330 3qhy_B Beta-lactamase inhibito 95.9 0.85 2.9E-05 40.4 19.6 219 126-396 26-246 (282)
331 2zwa_A Leucine carboxyl methyl 95.7 1.1 3.9E-05 45.4 20.7 147 246-396 451-635 (695)
332 3qhy_B Beta-lactamase inhibito 95.6 1.1 3.8E-05 39.6 22.2 224 162-456 24-248 (282)
333 1xi4_A Clathrin heavy chain; a 95.6 0.99 3.4E-05 48.8 19.7 196 242-460 72-295 (1630)
334 2xzh_A Clathrin heavy chain 1; 95.5 1.3 4.3E-05 39.8 29.2 253 143-455 49-333 (365)
335 3das_A Putative oxidoreductase 95.2 1.7 6E-05 39.5 30.0 232 163-423 33-320 (347)
336 2g8s_A Glucose/sorbosone dehyd 95.2 1.9 6.4E-05 39.6 24.5 31 325-355 271-308 (353)
337 3das_A Putative oxidoreductase 95.1 1.1 3.7E-05 40.9 16.3 148 273-423 27-214 (347)
338 3a9g_A Putative uncharacterize 94.8 2.3 8E-05 38.9 25.4 200 128-355 35-296 (354)
339 2be1_A Serine/threonine-protei 94.7 0.64 2.2E-05 42.2 13.7 107 174-309 11-132 (339)
340 2be1_A Serine/threonine-protei 94.6 0.15 5E-06 46.5 9.2 144 248-393 11-181 (339)
341 1cru_A Protein (soluble quinop 94.5 3.4 0.00012 39.3 29.6 107 163-293 28-159 (454)
342 2zwa_A Leucine carboxyl methyl 94.5 2.6 8.9E-05 42.7 19.0 149 245-398 396-579 (695)
343 1bpo_A Protein (clathrin); cla 94.4 3.4 0.00012 38.7 31.1 254 142-455 47-332 (494)
344 2uvk_A YJHT; unknown function, 94.3 3.1 0.00011 37.9 21.7 138 298-456 168-344 (357)
345 1cru_A Protein (soluble quinop 94.2 4 0.00014 38.9 19.1 109 235-343 26-162 (454)
346 1xi4_A Clathrin heavy chain; a 93.8 6.4 0.00022 42.9 20.4 253 143-455 48-332 (1630)
347 3kci_A Probable E3 ubiquitin-p 88.4 15 0.00053 33.8 30.6 246 125-396 54-345 (389)
348 3s25_A Hypothetical 7-bladed b 87.9 14 0.00048 32.7 23.3 126 242-384 151-280 (302)
349 3no0_A DNA gyrase subunit A; D 86.8 15 0.00053 32.0 22.6 213 111-354 8-245 (276)
350 3sbq_A Nitrous-oxide reductase 85.9 27 0.00091 34.0 16.0 125 280-406 325-487 (638)
351 3mvd_K Regulator of chromosome 85.9 23 0.00077 33.1 30.0 243 125-396 76-374 (423)
352 3s25_A Hypothetical 7-bladed b 84.5 21 0.00073 31.6 26.4 136 242-396 110-255 (302)
353 4gq2_M Nucleoporin NUP120; bet 82.9 15 0.00051 38.7 13.5 39 236-274 236-274 (950)
354 3l6v_A GYRA, DNA gyrase subuni 80.6 34 0.0012 31.3 26.6 159 170-354 4-179 (370)
355 4d9s_A UVB-resistance protein 79.9 38 0.0013 31.4 37.0 290 124-455 16-358 (406)
356 4gq2_M Nucleoporin NUP120; bet 79.9 64 0.0022 33.9 18.0 32 412-456 237-268 (950)
357 3kci_A Probable E3 ubiquitin-p 79.3 39 0.0013 31.1 35.5 204 237-456 106-347 (389)
358 3b7f_A Glycosyl hydrolase, BNR 77.9 42 0.0014 30.8 25.1 109 237-351 116-258 (394)
359 1suu_A DNA gyrase subunit A; t 77.9 37 0.0013 30.1 25.2 199 171-396 6-231 (312)
360 1zi0_A DNA gyrase subunit A; b 77.3 39 0.0013 30.0 26.7 245 172-455 2-278 (307)
361 1wp5_A Topoisomerase IV; broke 77.3 40 0.0014 30.1 24.2 160 234-396 37-225 (323)
362 2wg3_C Hedgehog-interacting pr 71.6 70 0.0024 30.3 29.0 29 163-191 15-44 (463)
363 4fhn_B Nucleoporin NUP120; pro 71.5 14 0.00048 39.8 9.6 38 237-274 239-276 (1139)
364 3sbq_A Nitrous-oxide reductase 69.6 19 0.00064 35.0 8.7 72 325-396 323-408 (638)
365 3no0_A DNA gyrase subunit A; D 68.5 59 0.002 28.2 23.7 160 234-396 66-246 (276)
366 2wg3_C Hedgehog-interacting pr 67.8 72 0.0024 30.2 12.6 109 278-386 14-159 (463)
367 3uc1_A DNA gyrase subunit A; D 64.4 79 0.0027 28.2 22.7 194 133-354 53-278 (327)
368 3uc1_A DNA gyrase subunit A; D 61.4 90 0.0031 27.9 26.0 207 234-455 40-280 (327)
369 4d9s_A UVB-resistance protein 61.3 1E+02 0.0035 28.4 30.4 243 125-396 69-357 (406)
370 4fhn_B Nucleoporin NUP120; pro 60.0 1.8E+02 0.0062 31.3 15.4 20 437-456 251-270 (1139)
371 1suu_A DNA gyrase subunit A; t 57.6 1E+02 0.0035 27.3 27.8 201 131-355 6-231 (312)
372 3mvd_K Regulator of chromosome 57.5 1.2E+02 0.0041 28.0 33.8 200 237-455 128-375 (423)
373 3f7f_A Nucleoporin NUP120; nuc 55.0 19 0.00065 36.1 6.1 38 236-275 222-259 (729)
374 3b7f_A Glycosyl hydrolase, BNR 49.0 1.5E+02 0.0053 26.8 19.2 100 247-351 22-143 (394)
375 3f7f_A Nucleoporin NUP120; nuc 46.4 32 0.0011 34.5 6.2 37 368-407 222-258 (729)
376 1zi0_A DNA gyrase subunit A; b 45.2 1.6E+02 0.0055 25.9 26.8 149 246-396 108-277 (307)
377 1zvt_A Topoisomerase IV subuni 43.6 1.5E+02 0.0052 25.2 13.4 152 172-355 1-163 (256)
378 1wp5_A Topoisomerase IV; broke 39.3 2.1E+02 0.007 25.4 26.5 241 132-396 4-277 (323)
379 3zwu_A Alkaline phosphatase PH 37.0 1.3E+02 0.0045 29.5 8.8 20 234-253 529-548 (592)
380 3q6k_A 43.2 kDa salivary prote 36.1 2.5E+02 0.0087 25.6 23.3 156 236-423 152-336 (381)
381 4hvt_A Ritya.17583.B, post-pro 35.7 3.5E+02 0.012 27.1 19.4 197 240-455 133-382 (711)
382 3of7_A Regulator of chromosome 33.9 3E+02 0.01 25.8 29.6 155 237-396 205-405 (473)
383 3al9_A Plexin-A2; beta-propell 33.7 79 0.0027 30.6 6.7 71 280-350 402-476 (539)
384 4a9v_A PHOX; hydrolase, beta-p 31.3 2.6E+02 0.0089 27.3 9.6 20 235-254 530-549 (592)
385 1q47_A Semaphorin 3A; beta pro 30.3 1.9E+02 0.0064 27.6 8.6 61 290-350 423-487 (495)
386 4hvt_A Ritya.17583.B, post-pro 29.2 4.5E+02 0.015 26.4 25.3 59 296-356 318-382 (711)
387 4a9v_A PHOX; hydrolase, beta-p 26.1 2.8E+02 0.0095 27.1 8.8 58 279-342 477-548 (592)
388 3l6v_A GYRA, DNA gyrase subuni 25.0 3.9E+02 0.013 24.2 26.6 201 131-354 5-264 (370)
389 1q47_A Semaphorin 3A; beta pro 21.6 2.5E+02 0.0084 26.8 7.7 53 135-187 423-487 (495)
390 3of7_A Regulator of chromosome 21.2 5.1E+02 0.017 24.2 25.6 160 278-455 148-342 (473)
391 3nvq_A Semaphorin-7A; beta-pro 20.2 3E+02 0.01 26.9 7.9 62 290-351 382-445 (590)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.6e-45 Score=339.77 Aligned_cols=285 Identities=18% Similarity=0.270 Sum_probs=251.3
Q ss_pred cceeeeeeecccEEEEEec------CCEEEEeeCCCcEEEeeCCc----cccccccCcccEEEEEEeCCCCEEEEEeCCC
Q 012007 114 GLIGSIVRKEGHIYSLAAS------GDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~------g~~l~tg~~dg~i~vwd~~~----~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 183 (473)
.+...+.+|.+.|++++++ +++|++|+.|++|+||+... ....+.+|...|.+++|++++.++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 3456678999999999974 56999999999999998642 2345789999999999999999999999999
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEE
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd 263 (473)
.|++||+.+++...... .|...+.+++|+|++++|++|+.|+.|++||
T Consensus 103 ~i~lWd~~~~~~~~~~~--------------------------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~ 150 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSID--------------------------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150 (321)
T ss_dssp EEEEEETTTTEEEEEEE--------------------------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEE
T ss_pred cEEEEECCCCCEEEEEe--------------------------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 99999998876543332 2677889999999999999999999999999
Q ss_pred cCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe
Q 012007 264 ISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG 342 (473)
Q Consensus 264 ~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 342 (473)
+++++....+..|...|.+++|+|++ +|++|+.||.|++||++.+ .....+.+|...|.+++|+|++++|+++
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~spd~~~l~s~ 224 (321)
T 3ow8_A 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG------KLLHTLEGHAMPIRSLTFSPDSQLLVTA 224 (321)
T ss_dssp TTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCCCEEEECTTSCEEEEE
T ss_pred cCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC------cEEEEEcccCCceeEEEEcCCCCEEEEE
Confidence 99999999999999999999999998 8999999999999999732 3456678899999999999999999999
Q ss_pred CCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 343 SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
+.|+.|++||++.... ...+.+|...|.++++ ++.+|++|+.|++|++||+.+ ..++..+.+|.+.|.+++|+|
T Consensus 225 s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 225 SDDGYIKIYDVQHANL-AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT---RTCVHTFFDHQDQVWGVKYNG 300 (321)
T ss_dssp CTTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECT
T ss_pred cCCCeEEEEECCCcce-eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC---CEEEEEEcCCCCcEEEEEECC
Confidence 9999999999987543 4567889988877664 689999999999999999988 678899999999999999999
Q ss_pred CCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 421 DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
++. +|++++.||.|+|||..
T Consensus 301 ~g~-------------~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 301 NGS-------------KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSS-------------EEEEEETTCCEEEEECC
T ss_pred CCC-------------EEEEEeCCCeEEEEeCC
Confidence 998 89999999999999964
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-45 Score=353.45 Aligned_cols=282 Identities=22% Similarity=0.377 Sum_probs=249.8
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
...+.+|.+.|+++.++ +.+|++|+.||+|+|||.. +....+.+|.+.|.+++|+|++++|++|+.||+|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 45678999999998875 7899999999999999965 4567889999999999999999999999999999999998
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
+.+...... +|...|.+++|+|++++|++|+.|++|++||+++++++.
T Consensus 181 ~~~~~~~~~--------------------------------~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~ 228 (410)
T 1vyh_C 181 GFECIRTMH--------------------------------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 228 (410)
T ss_dssp SSCEEECCC--------------------------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCceeEEEc--------------------------------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 765432221 489999999999999999999999999999999999999
Q ss_pred EeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC---------------
Q 012007 272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE--------------- 335 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--------------- 335 (473)
.+.+|...|.++.+++++ ++++|+.|+.|++||++.. .....+..|...|.+++|+|+
T Consensus 229 ~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK------ECKAELREHRHVVECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC------ceeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence 999999999999999988 8999999999999999743 234567789999999999996
Q ss_pred -----CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 336 -----SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 336 -----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
+.+|++|+.|+.|++||++++... ..+.+|...|.++.+ ++++|++|+.||.|++||+.+ ..++..+.+
T Consensus 303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~---~~~~~~~~~ 378 (410)
T 1vyh_C 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN---KRCMKTLNA 378 (410)
T ss_dssp -----CCEEEEEETTSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT---SCCCEEEEC
T ss_pred ccCCCCCEEEEEeCCCeEEEEECCCCceE-EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceEEEEcC
Confidence 678999999999999999886543 567789988877664 689999999999999999987 567788899
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
|...|++++|+|++. +|++|+.||+|+||++
T Consensus 379 h~~~v~~l~~~~~~~-------------~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 379 HEHFVTSLDFHKTAP-------------YVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CSSCEEEEEECSSSS-------------CEEEEETTSEEEEEC-
T ss_pred CCCcEEEEEEcCCCC-------------EEEEEeCCCcEEEEeC
Confidence 999999999999998 8999999999999986
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.3e-44 Score=337.40 Aligned_cols=286 Identities=20% Similarity=0.337 Sum_probs=243.5
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
...+|.+|.+.|.++.++ +++|++|+.||+|+|||.. +.+..+..|...|.+++|+|++++|++|+.|+.|++|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 367889999999998874 8899999999999999965 456677889999999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
.+........ ....+|...|.++.|++++ .+++++.|++|++||+++++.+
T Consensus 127 ~~~~~~~~~~----------------------------~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~ 177 (340)
T 1got_B 127 KTREGNVRVS----------------------------RELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQT 177 (340)
T ss_dssp TTCSBSCEEE----------------------------EEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEE
T ss_pred ccCCCcceeE----------------------------EEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEE
Confidence 8754211110 1122599999999999876 4899999999999999999999
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
..+.+|...|.+++|+|++ ++++|+.|+.|++||++.. .....+.+|...|++++|+|++++|++++.||.|+
T Consensus 178 ~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~ 251 (340)
T 1got_B 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC------eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEE
Confidence 9999999999999999988 8999999999999999743 23466788999999999999999999999999999
Q ss_pred EEecCCccccccee-ecCcceEE--EEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCc
Q 012007 350 FWECEKHLSHGGVL-RGHKMAVL--CLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426 (473)
Q Consensus 350 iwd~~~~~~~~~~~-~~~~~~v~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 426 (473)
+||++......... ..+...+. ++++++++|++|+.|+.|++||+.+ ...+..+.+|.+.|++++|+|++.
T Consensus 252 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~---~~~~~~~~~h~~~v~~~~~s~dg~--- 325 (340)
T 1got_B 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK---ADRAGVLAGHDNRVSCLGVTDDGM--- 325 (340)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECTTSS---
T ss_pred EEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc---CcEeeEeecCCCcEEEEEEcCCCC---
Confidence 99998754432211 12223454 4556799999999999999999988 567788899999999999999998
Q ss_pred ccccCCCccEEEEEeeCCCcEEEEE
Q 012007 427 EYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 427 ~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+|++|+.||.|+|||
T Consensus 326 ----------~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 ----------AVATGSWDSFLKIWN 340 (340)
T ss_dssp ----------CEEEEETTSCEEEEC
T ss_pred ----------EEEEEcCCccEEecC
Confidence 899999999999996
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.3e-44 Score=335.34 Aligned_cols=284 Identities=20% Similarity=0.212 Sum_probs=226.5
Q ss_pred ecccEEEEE--ecCCEEEEeeCCCcEEEeeCC-----c--------cccccccCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 122 KEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL-----K--------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 122 h~~~V~~~~--~~g~~l~tg~~dg~i~vwd~~-----~--------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
|+..|.++. +||++|++++ |+++++||.. . .......|...|.+++|++++ .|++|+.||.|+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~ 106 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVE 106 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence 455566665 5689999888 6788888721 0 111122356789999999986 788999999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
|||+.+++....... ...+|.+.|.+++|+|++++|++|+.|++|++||+++
T Consensus 107 lWd~~~~~~~~~~~~----------------------------~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 107 LWELDENETLIVSKF----------------------------CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EEEECTTSSCEEEEE----------------------------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEeccCCCceeEeec----------------------------cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 999998865443321 1225999999999999999999999999999999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeC
Q 012007 267 CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGS 343 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~ 343 (473)
++++..+.+|...|.+++|++++ +|++++.|+.|++||++.... ........+...+.+++|+|+ +++|++|+
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP----ASQIGCSAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC----EEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce----eeeeecceeeccceeeeecCCCCcceEEec
Confidence 99999999999999999999886 789999999999999975331 111123455667999999994 57899999
Q ss_pred CCCcEEEEecCCcccccceeecCcceEEEEEe--cC-CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AG-NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
.||.|++||++++.. ...+.+|...|.++.+ ++ ++|++|+.|++|+|||+.++ + +..+.+|.+.|++++|+|
T Consensus 235 ~dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 235 ENGTVSLVDTKSTSC-VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSP 309 (344)
T ss_dssp TTSEEEEEESCC--C-CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECS
T ss_pred cCCcEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeC
Confidence 999999999997644 4677899999988775 55 68999999999999999873 3 345789999999999999
Q ss_pred CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 421 DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
++.. +|+|||.||+|++|++....
T Consensus 310 ~~~~------------llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 310 LNHS------------LLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSTT------------EEEEEETTSCEEEEECCC--
T ss_pred CCCe------------EEEEEcCCCeEEEEECCCCC
Confidence 9874 78899999999999998654
No 5
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-43 Score=331.84 Aligned_cols=298 Identities=19% Similarity=0.285 Sum_probs=232.3
Q ss_pred cceeeeeeecccEEEEEecCCEEEEeeCCCcEEEeeCCc----ccccc-cc-CcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 114 GLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK----EFSGF-KS-NSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~~----~~~~~-~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
.++.++.+|.+.|.++++++++||+|+.|++|+|||+.. ....+ .+ |.+.|.+++|+|++++|++|+.|+.|++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 357789999999999999988999999999999999763 22333 34 9999999999999999999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD- 266 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~- 266 (473)
||+........ . ........+|...|.+++|+|++++|++|+.|++|++||+..
T Consensus 85 w~~~~~~~~~~-~------------------------~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~ 139 (330)
T 2hes_X 85 WAKEESADRTF-E------------------------MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139 (330)
T ss_dssp EEC-------C-C------------------------CEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred EEcccCcCccc-c------------------------ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence 99864321000 0 000112235999999999999999999999999999999943
Q ss_pred ---CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC--CCEEE
Q 012007 267 ---CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE--SAVVY 340 (473)
Q Consensus 267 ---~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~ 340 (473)
.+++..+.+|...|.+++|+|++ +|++++.|+.|++||.... .......+.+|...|.+++|+|+ +.+|+
T Consensus 140 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 140 GEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD----DWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT----EEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred CCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC----CeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 35678889999999999999987 8999999999999997632 22345677899999999999998 67899
Q ss_pred EeCCCCcEEEEecCCcc-------cccceee-cCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEE-EEecCCC
Q 012007 341 CGSSDGLVNFWECEKHL-------SHGGVLR-GHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCL-AVLTGHT 410 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~-------~~~~~~~-~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~h~ 410 (473)
+++.|+.|++||++... .....+. .|...|.++++. +.+|++++.||.|++|+..++. ...+ ....+|.
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~h~ 294 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGE-WKVFAKRALCHG 294 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTE-EEEEEEESCTTT
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCc-eEEEeccccccc
Confidence 99999999999987532 1112233 388889888875 5689999999999999987632 2333 3446788
Q ss_pred C-ceeEEEEec--CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 411 G-PVKCLAVEE--DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 411 ~-~V~~l~~~~--~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
. .|.+++|+| ++. +|++|+.||+|+||++..
T Consensus 295 ~~~v~~v~~~~~~~~~-------------~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 295 VYEINVVKWLELNGKT-------------ILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEC-----C-------------CEEEEETTSEEEEEEC--
T ss_pred cceEEEEEEecCCCce-------------EEEEecCCCcEEEEEecc
Confidence 7 899999999 565 799999999999999864
No 6
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3e-43 Score=332.26 Aligned_cols=300 Identities=21% Similarity=0.277 Sum_probs=239.4
Q ss_pred cceeeeeeecc-cEEEEEe--cCCEEEEeeCCCcEEEeeCCcc-----ccccccCcccEEEEEEeCCCCEEEEEeCCCeE
Q 012007 114 GLIGSIVRKEG-HIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKI 185 (473)
Q Consensus 114 ~~~~~l~~h~~-~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~-----~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 185 (473)
.++.++.+|.+ .|+++++ +|++||+|+.|++|+|||.... .....+|...|.+++|+|++++|++|+.|+.|
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 45778889987 7877665 5899999999999999986532 12346899999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
++|++.......... ..+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 86 ~iw~~~~~~~~~~~~------------------------------~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~ 135 (345)
T 3fm0_A 86 CIWKKNQDDFECVTT------------------------------LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135 (345)
T ss_dssp EEEEECCC-EEEEEE------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred EEEEccCCCeEEEEE------------------------------ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence 999987664322221 12499999999999999999999999999999998
Q ss_pred CC---eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE
Q 012007 266 DC---KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 266 ~~---~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
++ +++..+..|...|.+++|+|++ +|++++.|+.|++||.+.. .......+.+|...|++++|+|++++|++
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~----~~~~~~~~~~h~~~v~~l~~sp~g~~l~s 211 (345)
T 3fm0_A 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED----DWVCCATLEGHESTVWSLAFDPSGQRLAS 211 (345)
T ss_dssp TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETT----EEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCC----CEEEEEEecCCCCceEEEEECCCCCEEEE
Confidence 75 4567788999999999999998 8999999999999998632 22334667899999999999999999999
Q ss_pred eCCCCcEEEEecCCcccc--------------cceee-cCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCc-----
Q 012007 342 GSSDGLVNFWECEKHLSH--------------GGVLR-GHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGA----- 399 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~~~--------------~~~~~-~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~----- 399 (473)
++.|+.|++||....... ...+. .|...|.++++ ++.+|++++.|+.|++|+......
T Consensus 212 ~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 291 (345)
T 3fm0_A 212 CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT 291 (345)
T ss_dssp EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC
T ss_pred EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee
Confidence 999999999996432111 11122 27777777665 588999999999999999875321
Q ss_pred e-eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 400 H-SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 400 ~-~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
. .......+|...|++++|+|++.. +|++|+.||+|++|++...++..
T Consensus 292 ~~~~~~~~~~h~~~V~~v~~~p~~~~------------~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 292 FSLTAHLHQAHSQDVNCVAWNPKEPG------------LLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EEEEEEETTSSSSCEEEEEECSSSTT------------EEEEEETTSCEEEEEECC-----
T ss_pred EEEEeeecccccCcEeEeEEeCCCce------------EEEEcCCCCcEEEEEecCCCCcc
Confidence 1 122345689999999999998743 89999999999999998877543
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7e-43 Score=326.06 Aligned_cols=284 Identities=22% Similarity=0.399 Sum_probs=238.1
Q ss_pred cceeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCC-------ccccccccCcccEEEEEEeCCCCEEEEEeCCC
Q 012007 114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL-------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~-------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 183 (473)
.+..+|.+|.+.|.+++++ +++|++|+.|++|++|+.. ..+..+.+|...|.+++|++++++|++|+.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 4567899999999999875 4799999999999999864 23567889999999999999999999999999
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEE
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd 263 (473)
+|++||+.+++...... +|...|.+++|+|++.+|++|+.|++|++||
T Consensus 88 ~v~~wd~~~~~~~~~~~--------------------------------~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 88 TLRLWDVATGETYQRFV--------------------------------GHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135 (319)
T ss_dssp EEEEEETTTTEEEEEEE--------------------------------CCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCCeeEEEc--------------------------------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 99999998876443322 4999999999999999999999999999999
Q ss_pred cCCCeeeEEeecCCCceeEEEEcCCC-------EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC
Q 012007 264 ISDCKCLESINAHDDAINSVVAGFDS-------LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES 336 (473)
Q Consensus 264 ~~~~~~~~~~~~~~~~v~~l~~~~~~-------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 336 (473)
++ ++++..+.+|...|.++.+.|.. .+++++.|+.|++||++. ......+.+|...|.+++|+|++
T Consensus 136 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 136 IK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ------FQIEADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp TT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT------TEEEEEECCCCSCEEEEEECTTS
T ss_pred CC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc------chhheeecCCCCcEEEEEEcCCC
Confidence 96 56778888999999999998853 799999999999999963 23455677899999999999999
Q ss_pred CEEEEeCCCCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec-------
Q 012007 337 AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT------- 407 (473)
Q Consensus 337 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------- 407 (473)
++|++++.||.|++||+++..... .+..+ ..+ .++++++.+|++++.+ .+++|++.. ...+..+.
T Consensus 209 ~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~---~~~~~~~~~~~~~~~ 282 (319)
T 3frx_A 209 TLIASAGKDGEIMLWNLAAKKAMY-TLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDP---QYLVDDLRPEFAGYS 282 (319)
T ss_dssp SEEEEEETTCEEEEEETTTTEEEE-EEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETT---EEEEEEECCCCTTCC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE-EecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCc---CeeeeccCccccccc
Confidence 999999999999999998765443 33332 345 4556678999888855 599999987 44444443
Q ss_pred -CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 408 -GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 408 -~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.|...|.+++|+|+++ +|++|+.||.|+||++.+.
T Consensus 283 ~~~~~~v~~~~~spdg~-------------~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 283 KAAEPHAVSLAWSADGQ-------------TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp GGGCCCEEEEEECTTSS-------------EEEEEETTSCEEEEEEEEC
T ss_pred cCcCcceeEEEECCCCC-------------EEEEeecCceEEEEEEeec
Confidence 2456789999999999 8999999999999998754
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.8e-43 Score=331.90 Aligned_cols=289 Identities=18% Similarity=0.282 Sum_probs=243.8
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
....+|.+|.+.|++++++ +++|++|+.||+|+|||.. +....+..|...|.+++|+|++.+|++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 3467899999999999875 8899999999999999965 44556777889999999999999999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
+......... .......+|...|.+++|++++..|++++.|++|++||++++++
T Consensus 135 ~~~~~~~~~~--------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~ 188 (354)
T 2pbi_B 135 LTFDKNENMA--------------------------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL 188 (354)
T ss_dssp CCCCTTCCSG--------------------------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred Eecccccccc--------------------------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE
Confidence 8654211000 00112235999999999999999999999999999999999999
Q ss_pred eEEeecCCCceeEEEEcCC---CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 270 LESINAHDDAINSVVAGFD---SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
+..+.+|...|.++.+++. .+|++|+.||.|++||++.+. ....+..|...|++++|+|++.+|++++.|+
T Consensus 189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 262 (354)
T 2pbi_B 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ------CVQAFETHESDVNSVRYYPSGDAFASGSDDA 262 (354)
T ss_dssp EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCC
Confidence 9999999999999999874 389999999999999997432 3556788999999999999999999999999
Q ss_pred cEEEEecCCcccccceeecC--cceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 347 LVNFWECEKHLSHGGVLRGH--KMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~--~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
.|++||++...... .+..+ ...+ .++++++.+|++|+.|+.|++||+.+ ...+..+.+|.+.|++++|+|++
T Consensus 263 ~v~lwd~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~---~~~~~~l~~h~~~v~~l~~spdg 338 (354)
T 2pbi_B 263 TCRLYDLRADREVA-IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK---GSRVSILFGHENRVSTLRVSPDG 338 (354)
T ss_dssp CEEEEETTTTEEEE-EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT---CSEEEEECCCSSCEEEEEECTTS
T ss_pred eEEEEECCCCcEEE-EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC---CceEEEEECCCCcEEEEEECCCC
Confidence 99999998754332 22222 2234 45567799999999999999999987 46778889999999999999999
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
. +|++|+.||+|+||+
T Consensus 339 ~-------------~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 339 T-------------AFCSGSWDHTLRVWA 354 (354)
T ss_dssp S-------------CEEEEETTSEEEEEC
T ss_pred C-------------EEEEEcCCCCEEecC
Confidence 8 899999999999995
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-42 Score=321.73 Aligned_cols=289 Identities=18% Similarity=0.255 Sum_probs=243.9
Q ss_pred cceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.+..++.+|.+.|.++++ ++++|++|+.||+|+|||.. ..+..+..|...|.+++|++++++|++|+.|+.|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 346789999999999886 48899999999999999976 45677888999999999999999999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-e
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-K 268 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~-~ 268 (473)
+.+++...... +|.+.|.+++|+|++++|++|+.|++|++||++++ .
T Consensus 84 ~~~~~~~~~~~--------------------------------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~ 131 (304)
T 2ynn_A 84 YNTGEKVVDFE--------------------------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (304)
T ss_dssp TTTCCEEEEEE--------------------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE
T ss_pred CCCCcEEEEEe--------------------------------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc
Confidence 99886544332 49999999999999999999999999999999887 5
Q ss_pred eeEEeecCCCceeEEEEcCC-C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc--CCCEEEEeCC
Q 012007 269 CLESINAHDDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ--ESAVVYCGSS 344 (473)
Q Consensus 269 ~~~~~~~~~~~v~~l~~~~~-~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~ 344 (473)
....+.+|...|.+++|+|. + .|++|+.|+.|++||++... ........|...+..+.|+| ++.+|++++.
T Consensus 132 ~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 206 (304)
T 2ynn_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (304)
T ss_dssp EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS-----CSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-----ccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence 66778899999999999984 3 89999999999999997432 22333456778899999987 7789999999
Q ss_pred CCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 345 DGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
|+.|++||++++.. ...+.+|...+.++. +++.+|++|+.||+|++||+.+ .+++..+..|...+.+++|+|++
T Consensus 207 D~~i~iWd~~~~~~-~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~~~ 282 (304)
T 2ynn_A 207 DLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST---YKVEKTLNVGLERSWCIATHPTG 282 (304)
T ss_dssp TSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT---CCEEEEECCSSSSEEEEEECTTC
T ss_pred CCeEEEEeCCCCcc-ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC---CceeeeccCCCccEEEEEECCCC
Confidence 99999999987543 457788988887665 5688999999999999999998 67888899999999999999987
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
... ++++|+.| .+.+|++...
T Consensus 283 ~~~-----------~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 283 RKN-----------YIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp GGG-----------CEEEEETT-EEEEEECC--
T ss_pred Cce-----------EEEEecCC-ceEEEEeccC
Confidence 521 47777655 5778887653
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.8e-43 Score=331.64 Aligned_cols=290 Identities=20% Similarity=0.247 Sum_probs=227.2
Q ss_pred eecccEEEEEe--cCCEEEEeeC------CCcEEEeeCCcc------ccccccCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 121 RKEGHIYSLAA--SGDLLYTGSD------SKNIRVWKNLKE------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 121 ~h~~~V~~~~~--~g~~l~tg~~------dg~i~vwd~~~~------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
.|++.|.+++| ||++||+|+. |+.|++|+.... .....+|...|.+++|+|++. +++++.||.|+
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~ 118 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVE 118 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEE
Confidence 57888888765 6999999998 778999975422 233456889999999999984 56778999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
|||+.+++...... ....+|...|.+++|+|++++|++|+.|+.|++||+++
T Consensus 119 lWd~~~~~~~~~~~----------------------------~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~ 170 (357)
T 4g56_B 119 LWEILEKESLLVNK----------------------------FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170 (357)
T ss_dssp EC--------CCCC----------------------------EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EeeccccceeEEEe----------------------------eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 99998765432211 11224999999999999999999999999999999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeC
Q 012007 267 CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGS 343 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~ 343 (473)
++++..+.+|...|.+++|++++ ++++++.||.|++||++.... ........+...+++++|+|+ +.+|++|+
T Consensus 171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP----ATRIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC----BCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce----eeeeeeccccccccchhhhhcccceEEEee
Confidence 99999999999999999999875 789999999999999975332 112234567788999999997 57899999
Q ss_pred CCCcEEEEecCCcccccceeecCcceEEEEEe--cC-CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AG-NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
.|+.|++||+++... ...+.+|...|.++++ ++ ++|++|+.|++|+|||+++ .+++.. .+|.+.|++|+|+|
T Consensus 247 ~d~~i~~wd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~---~~~~~~-~~H~~~V~~vafsP 321 (357)
T 4g56_B 247 ETGNVSLVNIKNPDS-AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF---SEVFRD-LSHRDFVTGVAWSP 321 (357)
T ss_dssp SSSCEEEEESSCGGG-CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS---CEEEEE-CCCSSCEEEEEECS
T ss_pred cccceeEEECCCCcE-eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC---CcEeEE-CCCCCCEEEEEEeC
Confidence 999999999988644 4567789888887775 44 6899999999999999988 455544 48999999999998
Q ss_pred -CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 421 -DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 421 -~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
++. +|+|||.||+|++|++....+....
T Consensus 322 ~d~~-------------~l~s~s~Dg~v~iW~~~~~~~~~~~ 350 (357)
T 4g56_B 322 LDHS-------------KFTTVGWDHKVLHHHLPSEGRTENL 350 (357)
T ss_dssp SSTT-------------EEEEEETTSCEEEEECC--------
T ss_pred CCCC-------------EEEEEcCCCeEEEEECCCCCccccc
Confidence 566 8999999999999999876554443
No 11
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.9e-42 Score=326.56 Aligned_cols=287 Identities=16% Similarity=0.268 Sum_probs=232.8
Q ss_pred cceeeeeeecccEEEEEe--------cCCEEEEeeCCCcEEEeeCCc---------cccccccCcccEEEEEEeCCCCEE
Q 012007 114 GLIGSIVRKEGHIYSLAA--------SGDLLYTGSDSKNIRVWKNLK---------EFSGFKSNSGLVKAIIISGDSNKI 176 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--------~g~~l~tg~~dg~i~vwd~~~---------~~~~~~~h~~~V~~l~~s~~~~~l 176 (473)
.+...|.+|.+.|.++.+ ++++|++|+.|++|+|||+.. ....+.+|...|.+++|+|++.+|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 456789999999999987 688999999999999999642 245678999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC
Q 012007 177 FTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD 256 (473)
Q Consensus 177 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d 256 (473)
++|+.|+.|++||+.+++...... +|...|.+++|+|++++|++|+.|
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~--------------------------------~h~~~v~~v~~sp~~~~l~s~~~d 139 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFV--------------------------------GHQSEVYSVAFSPDNRQILSAGAE 139 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEE--------------------------------CCCSCEEEEEECSSTTEEEEEETT
T ss_pred EEEcCCCcEEEEECCCCcEEEEEc--------------------------------CCCCcEEEEEECCCCCEEEEEcCC
Confidence 999999999999998876543322 499999999999999999999999
Q ss_pred CCEEEEEcCCCeeeEEee---cCCCceeEEEEcCCC-----------EEEEEeCCCcEEEEeCcccCCCcceeeeeeecc
Q 012007 257 KTLKVWRISDCKCLESIN---AHDDAINSVVAGFDS-----------LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK 322 (473)
Q Consensus 257 g~v~vwd~~~~~~~~~~~---~~~~~v~~l~~~~~~-----------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 322 (473)
++|++||+.... ..... .|...|.++.|+|++ ++++++.||.|++||.. ......+..
T Consensus 140 ~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-------~~~~~~~~~ 211 (343)
T 2xzm_R 140 REIKLWNILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-------FQIRYTFKA 211 (343)
T ss_dssp SCEEEEESSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-------TEEEEEEEC
T ss_pred CEEEEEeccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-------CceeEEEcC
Confidence 999999997433 33332 688999999999874 79999999999999953 123456778
Q ss_pred CCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee-ecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCcee
Q 012007 323 HENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL-RGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHS 401 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 401 (473)
|...|.+++|+|++++|++|+.||.|++||+.........+ .++.....++++++.+++++ .|+.|++|++.+....
T Consensus 212 h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~- 289 (343)
T 2xzm_R 212 HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKA- 289 (343)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSC-
T ss_pred ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCC-
Confidence 99999999999999999999999999999995433333333 23333334555678777655 5888999999874322
Q ss_pred EEEEec-----------CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 402 CLAVLT-----------GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 402 ~~~~~~-----------~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.+..+. +|...|++++|+|++. +|++|+.||.|++|++.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-------------~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 290 PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK-------------KLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC-------------CEEEEETTSEEEEEEEEEE
T ss_pred ceEEeecCcchhhhhhcCCCCceEEEEECCCCC-------------eEEEecCCceEEEEEEEcc
Confidence 122222 7888999999999998 7999999999999998754
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.5e-42 Score=321.47 Aligned_cols=286 Identities=24% Similarity=0.459 Sum_probs=245.8
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.+..++.+|.+.|.++.++ +++|++|+.||.|++|+.. +....+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 4467888999999998865 8899999999999999965 45667888999999999999999999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
+.+++...... +|...|.+++|+|++++|++|+.|+.|++||+++++.
T Consensus 94 ~~~~~~~~~~~--------------------------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 141 (312)
T 4ery_A 94 VSSGKCLKTLK--------------------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141 (312)
T ss_dssp TTTCCEEEEEE--------------------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCcEEEEEc--------------------------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence 98876543322 4889999999999999999999999999999999999
Q ss_pred eEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcE
Q 012007 270 LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 348 (473)
+..+..|...|.++.|++++ ++++++.||.|++||++.. .........+...+..++|+|++++|++++.||.|
T Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 216 (312)
T 4ery_A 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence 99999999999999999987 8999999999999999732 22333445677789999999999999999999999
Q ss_pred EEEecCCcccccceeecCcceE----EEEE-ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 349 NFWECEKHLSHGGVLRGHKMAV----LCLA-AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~v----~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
++||+++.... ..+.+|.... ..+. .++.+|++|+.||.|++||+.+ ...+..+.+|...|.+++|+|++.
T Consensus 217 ~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~p~~~ 292 (312)
T 4ery_A 217 KLWDYSKGKCL-KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT---KEIVQKLQGHTDVVISTACHPTEN 292 (312)
T ss_dssp EEEETTTTEEE-EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT---CCEEEEECCCSSCEEEEEECSSSS
T ss_pred EEEECCCCcEE-EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC---chhhhhhhccCCcEEEEeecCcCC
Confidence 99999876443 3455555432 2333 4588999999999999999988 577889999999999999999998
Q ss_pred CCcccccCCCccEEEEEee--CCCcEEEEEcC
Q 012007 424 HDHEYHQKGDQRWTVYSGS--LDKSVKVWRVS 453 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s--~Dg~v~iW~i~ 453 (473)
+|++++ .|++|++|+..
T Consensus 293 -------------~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 293 -------------IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp -------------EEEEEECTTTCCEEEEECC
T ss_pred -------------ceEEEEccCCccEEEecCC
Confidence 888887 69999999964
No 13
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-43 Score=339.16 Aligned_cols=295 Identities=19% Similarity=0.367 Sum_probs=243.7
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
...+|.+|.+.|+++.++ +++|++|+.||+|+|||.. +....+..|...|.+++|+|++++|++|+.|+.|++|++
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 467899999999998864 8899999999999999965 456678899999999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
.+....... . .......+|...|.++.|.|+ +..|++|+.|++|++||+++++.
T Consensus 138 ~~~~~~~~~----~---------------------~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~ 192 (380)
T 3iz6_a 138 SSQADRDGN----M---------------------PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR 192 (380)
T ss_dssp CCCSSCCCS----S---------------------TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE
T ss_pred CCCccccCC----c---------------------cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE
Confidence 764311000 0 000122359999999999996 45799999999999999999998
Q ss_pred eEEe-----ecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe
Q 012007 270 LESI-----NAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG 342 (473)
Q Consensus 270 ~~~~-----~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 342 (473)
+..+ .+|...|.++.+.+ ++ +|++|+.|+.|++||++.. ......+.+|...|.+++|+|++.+|+++
T Consensus 193 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~-----~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 267 (380)
T 3iz6_a 193 ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT-----SRAVRTYHGHEGDINSVKFFPDGQRFGTG 267 (380)
T ss_dssp EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT-----CCCCEEECCCSSCCCEEEECTTSSEEEEE
T ss_pred EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC-----CcceEEECCcCCCeEEEEEecCCCeEEEE
Confidence 8877 57889999999976 43 8999999999999999732 23456778899999999999999999999
Q ss_pred CCCCcEEEEecCCcccccceeecC-------c--ceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe----cCC
Q 012007 343 SSDGLVNFWECEKHLSHGGVLRGH-------K--MAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL----TGH 409 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~~~-------~--~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~h 409 (473)
+.||.|++||++++.... .+..+ . ....+++++|++|++|+.||.|++||+..+ +.+..+ .+|
T Consensus 268 s~D~~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~~~~h 343 (380)
T 3iz6_a 268 SDDGTCRLFDMRTGHQLQ-VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVLNLGTLQNSH 343 (380)
T ss_dssp CSSSCEEEEETTTTEEEE-EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEEEECCSCSSC
T ss_pred cCCCeEEEEECCCCcEEE-EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEEEEecccCCC
Confidence 999999999998765432 22211 1 234667788999999999999999999873 444444 689
Q ss_pred CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 410 ~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.+.|++++|+|++. +|++|+.||+|+||++....
T Consensus 344 ~~~v~~l~~s~dg~-------------~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 344 EGRISCLGLSSDGS-------------ALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCCCCEEEECSSSS-------------EEEEECTTSCEEEEECCSSS
T ss_pred CCceEEEEECCCCC-------------EEEEeeCCCCEEEEecCCCc
Confidence 99999999999998 89999999999999998654
No 14
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-41 Score=314.65 Aligned_cols=252 Identities=23% Similarity=0.329 Sum_probs=222.1
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
....+.+|.+.|.+++|+|++++|++|+.||.|++||+.++.......
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-------------------------------- 52 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-------------------------------- 52 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------------------
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee--------------------------------
Confidence 355788999999999999999999999999999999998876443322
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
.|...|.+++|++++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ +|++|+.|+.|++||++.
T Consensus 53 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~---- 128 (304)
T 2ynn_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN---- 128 (304)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG----
T ss_pred ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC----
Confidence 388899999999999999999999999999999999999999999999999999998 899999999999999973
Q ss_pred cceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe----cCCEEEEEeCC
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA----AGNLVFSGSAD 386 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~s~~~d 386 (473)
.......+.+|...|.+++|+| ++.+|++|+.|+.|++||++..........+|...+..+.+ ++.+|++|+.|
T Consensus 129 -~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D 207 (304)
T 2ynn_A 129 -NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (304)
T ss_dssp -TTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred -CcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence 3344567789999999999999 67899999999999999998765554455566666655553 57899999999
Q ss_pred CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
++|++||+++ ..++..+.+|...|.+++|+|++. +|++|+.||+|++||+.+++.
T Consensus 208 ~~i~iWd~~~---~~~~~~~~~h~~~v~~~~~~p~~~-------------~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 208 LTIKIWDYQT---KSCVATLEGHMSNVSFAVFHPTLP-------------IIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp SEEEEEETTT---TEEEEEEECCSSCEEEEEECSSSS-------------EEEEEETTSCEEEEETTTCCE
T ss_pred CeEEEEeCCC---CccceeeCCCCCCEEEEEECCCCC-------------EEEEEcCCCeEEEEECCCCce
Confidence 9999999998 578899999999999999999998 899999999999999987653
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.2e-41 Score=340.13 Aligned_cols=303 Identities=19% Similarity=0.268 Sum_probs=239.4
Q ss_pred ceeeeeeecccEEEEEec--CC-EEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 115 LIGSIVRKEGHIYSLAAS--GD-LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~-~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
....+.+|.+.|.+++|+ +. +|++|+.|++|++||.. +....+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd 218 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence 345688999999998876 44 69999999999999965 44567889999999999999999999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
+.+++......... ....+|.+.|.+++|+|++++|++++.|++|++||+.++++
T Consensus 219 ~~~g~~~~~~~~~~-------------------------~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 219 GVDGTKTGVFEDDS-------------------------LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp TTTCCEEEECBCTT-------------------------SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCCcEeeeecccc-------------------------ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 98876543321100 00114999999999999999999999999999999988765
Q ss_pred eEE-------------------------------------------eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeC
Q 012007 270 LES-------------------------------------------INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRR 305 (473)
Q Consensus 270 ~~~-------------------------------------------~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~ 305 (473)
+.. +.+|...|.+++|+|++ +|++++.|+.|++||+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~ 353 (611)
T 1nr0_A 274 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353 (611)
T ss_dssp EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Confidence 543 34788999999999998 8999999999999998
Q ss_pred cccCCCcce-----------------ee-----------------------------------e----------------
Q 012007 306 ELQGKGTKH-----------------CL-----------------------------------A---------------- 317 (473)
Q Consensus 306 ~~~~~~~~~-----------------~~-----------------------------------~---------------- 317 (473)
..+...... .+ .
T Consensus 354 ~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~ 433 (611)
T 1nr0_A 354 STGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 433 (611)
T ss_dssp TTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSE
T ss_pred CCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCce
Confidence 643210000 00 0
Q ss_pred --------eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCC
Q 012007 318 --------QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADR 387 (473)
Q Consensus 318 --------~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg 387 (473)
.....|...+.+++|+|++++|++|+.|+.|++||+...........+|...|.+++ ++|++|++++.|+
T Consensus 434 v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~ 513 (611)
T 1nr0_A 434 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 513 (611)
T ss_dssp EEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCC
Confidence 000123456889999999999999999999999999764322112257887776655 5799999999999
Q ss_pred cEEEEecCCCCceeEEEE--ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 388 NICLWRREESGAHSCLAV--LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+|++|++.+.. +++.. +.+|...|++++|+|+++ +|++|+.|++|++|++..+..
T Consensus 514 ~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~-------------~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 514 KVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNV-------------RLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp CEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSS-------------EEEEEETTSCEEEEETTCTTS
T ss_pred CEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCC-------------EEEEEECCCcEEEEECCCccc
Confidence 99999998621 23332 345999999999999998 899999999999999987653
No 16
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.4e-40 Score=311.51 Aligned_cols=287 Identities=21% Similarity=0.374 Sum_probs=234.1
Q ss_pred cceeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCCc-------cccccccCcccEEEEEEeCCCCEEEEEeCCC
Q 012007 114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK-------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~~-------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 183 (473)
.+..+|.||.+.|++++++ +++||||+.||+|+|||+.. ....+.+|...|.+++|+|++++|++|+.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 4577899999999999975 57999999999999999642 2456788999999999999999999999999
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEE
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd 263 (473)
.|++|+........... .+...+..+.+++++.+|++|+.|+.+++||
T Consensus 109 ~i~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d 156 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFV--------------------------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156 (340)
T ss_dssp EEEEEETTTTEEEEEEE--------------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cceEEeecccceeeeec--------------------------------CCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence 99999998775443332 2677888999999999999999999999999
Q ss_pred cCCCeee-EEeecCCCceeEEEEcCCC---EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE
Q 012007 264 ISDCKCL-ESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV 339 (473)
Q Consensus 264 ~~~~~~~-~~~~~~~~~v~~l~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 339 (473)
+...... .....|...+.++.+++++ ++++++.|+.|++||++. ......+.+|...|++++|+|++++|
T Consensus 157 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l 230 (340)
T 4aow_A 157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN------CKLKTNHIGHTGYLNTVTVSPDGSLC 230 (340)
T ss_dssp TTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT------TEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred eCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC------CceeeEecCCCCcEEEEEECCCCCEE
Confidence 9766543 4456789999999998764 788999999999999963 23456678899999999999999999
Q ss_pred EEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEE---------EecCC
Q 012007 340 YCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLA---------VLTGH 409 (473)
Q Consensus 340 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~h 409 (473)
++++.||.|++||+++..... .+.. ...+.++.+. +.++++++.|+.|++||+++. ..+. ...+|
T Consensus 231 ~s~s~Dg~i~iwd~~~~~~~~-~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~h 305 (340)
T 4aow_A 231 ASGGKDGQAMLWDLNEGKHLY-TLDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGK---IIVDELKQEVISTSSKAE 305 (340)
T ss_dssp EEEETTCEEEEEETTTTEEEE-EEEC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTT---EEEEEECCC-------CC
T ss_pred EEEeCCCeEEEEEeccCceee-eecC-CceEEeeecCCCCceeeccCCCEEEEEECCCC---eEEEeccccceeeeccCC
Confidence 999999999999999865543 3333 3345555443 335566667999999999873 3333 33478
Q ss_pred CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 410 ~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
...|++++|+|+++ +|++|+.||.|+|||+.++.
T Consensus 306 ~~~v~~l~~s~dg~-------------~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 306 PPQCTSLAWSADGQ-------------TLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCEEEEEECTTSS-------------EEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCCCC-------------EEEEEeCCCEEEEEeCCCcC
Confidence 89999999999998 89999999999999999875
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-40 Score=317.79 Aligned_cols=294 Identities=23% Similarity=0.397 Sum_probs=230.5
Q ss_pred eeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc--cccccccCc------------------ccEEEEEEeCCCCEE
Q 012007 119 IVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNS------------------GLVKAIIISGDSNKI 176 (473)
Q Consensus 119 l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~------------------~~V~~l~~s~~~~~l 176 (473)
..+|.+.|.++.+ +|++||+|+ |+.++||+... .+..+..|. ..|.+++|+|++++|
T Consensus 60 ~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 60 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred ecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 3479999988776 588999987 68999998652 333333332 249999999999999
Q ss_pred EEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC
Q 012007 177 FTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD 256 (473)
Q Consensus 177 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d 256 (473)
++|+.||.|++||+.+++..... .+|...|.+++|+|++++|++|+.|
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~--------------------------------~~h~~~v~~~~~~p~~~~l~s~s~d 186 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMIL--------------------------------QGHEQDIYSLDYFPSGDKLVSGSGD 186 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEE--------------------------------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEcCCCeEEEEECCCCcEEEEE--------------------------------ccCCCCEEEEEEcCCCCEEEEecCC
Confidence 99999999999999877543322 1499999999999999999999999
Q ss_pred CCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCCCcce-eeeeeeccCCccEEEEEEc
Q 012007 257 KTLKVWRISDCKCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKH-CLAQVLLKHENAVTALAVN 333 (473)
Q Consensus 257 g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~ 333 (473)
++|++||++++++...+. +...+.+++++| ++ +|++|+.||.|++||++.+...... .......+|...|.+++|+
T Consensus 187 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 265 (393)
T 1erj_A 187 RTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265 (393)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred CcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC
Confidence 999999999999888876 566799999998 55 8999999999999998743210000 0011225789999999999
Q ss_pred cCCCEEEEeCCCCcEEEEecCCccc-----------ccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCce
Q 012007 334 QESAVVYCGSSDGLVNFWECEKHLS-----------HGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAH 400 (473)
Q Consensus 334 ~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~ 400 (473)
|++++|++++.|+.|++||+++... ....+.+|...|.++.+ ++.+|++|+.|+.|++||+.+ .
T Consensus 266 ~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~---~ 342 (393)
T 1erj_A 266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS---G 342 (393)
T ss_dssp TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT---C
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC---C
Confidence 9999999999999999999975321 22356688888877665 689999999999999999988 5
Q ss_pred eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 401 SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 401 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.++..+.+|...|.+++|++... ......+|++|+.||+|+||++....
T Consensus 343 ~~~~~l~~h~~~v~~v~~~~~~~-------~~p~~~~l~sgs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 343 NPLLMLQGHRNSVISVAVANGSS-------LGPEYNVFATGSGDCKARIWKYKKIA 391 (393)
T ss_dssp CEEEEEECCSSCEEEEEECSSCT-------TCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred eEEEEECCCCCCEEEEEecCCcC-------cCCCCCEEEEECCCCcEEECcccccC
Confidence 67888899999999999987432 11111189999999999999987654
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.5e-40 Score=333.11 Aligned_cols=287 Identities=18% Similarity=0.228 Sum_probs=241.5
Q ss_pred cceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc----cccccccCcccEEEEEEeCCCCEEEEEeCC----C
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIISGDSNKIFTGHQD----G 183 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~----~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g 183 (473)
.....+.+|.+.|.++++ +|++||+|+.||+|+|||... ....+.+|.+.|.+++|+|++++|++++.+ +
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence 356678899999988775 589999999999999999742 234677899999999999999999998875 4
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC-EEEEEeCCCCEEEE
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVW 262 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~s~dg~v~vw 262 (473)
.|++||... .... +.+|...|.+++|+|++. .|++|+.|++|++|
T Consensus 130 ~v~~wd~~~--~~~~--------------------------------l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lw 175 (611)
T 1nr0_A 130 HVFLFDTGT--SNGN--------------------------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 175 (611)
T ss_dssp EEEETTTCC--BCBC--------------------------------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred EEEEeeCCC--Ccce--------------------------------ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEE
Confidence 788888532 1111 114999999999999987 69999999999999
Q ss_pred EcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeee-------ccCCccEEEEEEcc
Q 012007 263 RISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVL-------LKHENAVTALAVNQ 334 (473)
Q Consensus 263 d~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~v~~l~~~~ 334 (473)
|..+++++..+.+|...|.+++|+|++ +|++++.|+.|++||+..+.. ...+ .+|...|.+++|+|
T Consensus 176 d~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~------~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 176 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK------TGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp ETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE------EEECBCTTSSSCSSSSCEEEEEECT
T ss_pred ECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE------eeeeccccccccccCCCEEEEEECC
Confidence 999999999999999999999999998 899999999999999864321 1222 27999999999999
Q ss_pred CCCEEEEeCCCCcEEEEecCCcccccceee--cCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCc
Q 012007 335 ESAVVYCGSSDGLVNFWECEKHLSHGGVLR--GHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGP 412 (473)
Q Consensus 335 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 412 (473)
++++|++++.|++|++||++++........ .+......+.+++..+++++.|+.|++|+... ..+...+.+|...
T Consensus 250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~---~~~~~~~~gh~~~ 326 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL---GSIDQVRYGHNKA 326 (611)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT---TEEEEEECCCSSC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC---CCcceEEcCCCCC
Confidence 999999999999999999987654432221 23445677778999999999999999999887 4577788999999
Q ss_pred eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 413 VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 413 V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
|++++|+|+++ +|++++.|++|++||+..+.
T Consensus 327 v~~l~~spdg~-------------~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 327 ITALSSSADGK-------------TLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp EEEEEECTTSS-------------EEEEEETTSCEEEEETTTCC
T ss_pred EEEEEEeCCCC-------------EEEEEeCCCcEEEEECCCCc
Confidence 99999999998 89999999999999998764
No 19
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-39 Score=309.34 Aligned_cols=293 Identities=13% Similarity=0.204 Sum_probs=248.5
Q ss_pred ccccceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 111 SCNGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 111 ~~~~~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
........+.+|.+.|.++++ ++++|++|+.||.|+|||.. +.+..+.+|.+.|.+++|+|++++|++++.||.|+
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred ccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 334446678999999999887 48899999999999999965 56677889999999999999999999999999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC-----CCEEE
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD-----KTLKV 261 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-----g~v~v 261 (473)
+||+.+++...... +...|.+++|+|++++|++++.+ +.|++
T Consensus 100 iwd~~~~~~~~~~~---------------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~ 146 (369)
T 3zwl_B 100 LWDVSNGQCVATWK---------------------------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI 146 (369)
T ss_dssp EEETTTCCEEEEEE---------------------------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEE
T ss_pred EEECCCCcEEEEee---------------------------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEE
Confidence 99999876544332 77889999999999999999999 99999
Q ss_pred EEcCCCe-----------eeEEeecCCC--ceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccE
Q 012007 262 WRISDCK-----------CLESINAHDD--AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAV 327 (473)
Q Consensus 262 wd~~~~~-----------~~~~~~~~~~--~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 327 (473)
||+.... .+..+..|.. .+.+++|++++ .+++++.||.|++||++. .......+..|...|
T Consensus 147 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~v 221 (369)
T 3zwl_B 147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN-----NYEYVDSIDLHEKSI 221 (369)
T ss_dssp EEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT-----TTEEEEEEECCSSCE
T ss_pred EEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC-----CcEeEEEEecCCCce
Confidence 9997653 3445556666 89999999987 899999999999999973 234556777899999
Q ss_pred EEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCC--------------cEEEEe
Q 012007 328 TALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADR--------------NICLWR 393 (473)
Q Consensus 328 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg--------------~i~iwd 393 (473)
.+++|+|++.+|++++.||.|++||+++................+++++++++++++.++ .+++||
T Consensus 222 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred eEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 999999999999999999999999998865554333333334455667899999999988 899999
Q ss_pred cCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 394 REESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+.+ ...+..+.+|...|++++|+|++. +|++++.||.|++|++..+..
T Consensus 302 ~~~---~~~~~~~~~~~~~v~~~~~s~~~~-------------~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 302 KIF---EEEIGRVQGHFGPLNTVAISPQGT-------------SYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp TTT---CCEEEEEECCSSCEEEEEECTTSS-------------EEEEEETTSEEEEEEECHHHH
T ss_pred cCC---CcchhheecccCcEEEEEECCCCC-------------EEEEEcCCCeEEEEECccccc
Confidence 988 577888899999999999999998 899999999999999987543
No 20
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.7e-39 Score=332.74 Aligned_cols=285 Identities=22% Similarity=0.388 Sum_probs=230.8
Q ss_pred ceeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCCc-------cccccccCcccEEEEEEeCCCCEEEEEeCCCe
Q 012007 115 LIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK-------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGK 184 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~~-------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 184 (473)
+.+.+.+|.+.|.+++++ +++|++|+.||+|+|||+.. ....+.+|...|.+++|+|++++|++|+.||.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 456789999999999975 57999999999999998653 23467889999999999999999999999999
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
|+|||+.++...... .+|...|.+++|+|++++|++|+.|++|++||+
T Consensus 454 v~vwd~~~~~~~~~~--------------------------------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~ 501 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRF--------------------------------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501 (694)
T ss_dssp EEEEETTTTEEEEEE--------------------------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred EEEEECCCCcceeEE--------------------------------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence 999999887543322 249999999999999999999999999999998
Q ss_pred CCCeeeEEe---ecCCCceeEEEEcCCC---EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE
Q 012007 265 SDCKCLESI---NAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV 338 (473)
Q Consensus 265 ~~~~~~~~~---~~~~~~v~~l~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 338 (473)
......... .+|...|.+++|+|++ .+++++.|+.|++||++.. .....+.+|...|++++|+|++++
T Consensus 502 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~------~~~~~~~~h~~~v~~v~~spdg~~ 575 (694)
T 3dm0_A 502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC------KLRSTLAGHTGYVSTVAVSPDGSL 575 (694)
T ss_dssp TSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC------cEEEEEcCCCCCEEEEEEeCCCCE
Confidence 655443322 4688899999999985 7999999999999999632 245667889999999999999999
Q ss_pred EEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC---------
Q 012007 339 VYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH--------- 409 (473)
Q Consensus 339 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h--------- 409 (473)
|++++.||.|++||++++...............++++++.+|++++ |+.|+|||+.+ ...+..+..+
T Consensus 576 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~ 651 (694)
T 3dm0_A 576 CASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLES---KSIVEDLKVDLKAEAEKAD 651 (694)
T ss_dssp EEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTT---TEEEEEECCCCC-------
T ss_pred EEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCC---CCChhhhcccccccccccc
Confidence 9999999999999998865543332222233345566777777766 66799999998 3444444322
Q ss_pred ----------CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 410 ----------TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 410 ----------~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
...|++++|+|++. +|++|+.||+|+||++..
T Consensus 652 ~~~~~~~~~~~~~~~~l~~spdg~-------------~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 652 NSGPAATKRKVIYCTSLNWSADGS-------------TLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ---------CCCCEEEEEECTTSS-------------EEEEEETTSEEEEEEC--
T ss_pred ccccccCCceeEEeeeEEEcCCCC-------------EEEEEcCCCeEEEEeccC
Confidence 12378999999999 899999999999999863
No 21
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.1e-39 Score=324.30 Aligned_cols=278 Identities=26% Similarity=0.445 Sum_probs=242.0
Q ss_pred cceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
..+..+.+|.+.|.++++ ++++|++++.||.|++||.. ..+..+.+|...|.+++|+|++++|++|+.||.|++||.
T Consensus 294 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC
Confidence 345678889999988776 58899999999999999965 456678889999999999999999999999999999996
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
... ..... .+|...|.+++|+|++++|++++.|+.|++||. +++.+
T Consensus 374 ~~~-~~~~~--------------------------------~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~ 419 (577)
T 2ymu_A 374 NGQ-LLQTL--------------------------------TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL 419 (577)
T ss_dssp TCC-EEEEE--------------------------------ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEE
T ss_pred CCC-EEEEe--------------------------------cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEE
Confidence 432 22111 148899999999999999999999999999995 67888
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
..+..|...|.+++|+|++ +|++++.|+.|++||... .....+.+|...|++++|+|++++|++++.|+.|+
T Consensus 420 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~ 492 (577)
T 2ymu_A 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 492 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-------CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 8999999999999999988 899999999999999641 23456778999999999999999999999999999
Q ss_pred EEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcc
Q 012007 350 FWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 427 (473)
+||... .....+.+|...|.+++ +++++|++++.||.|++||.. .+++..+.+|.+.|++++|+|+++
T Consensus 493 iw~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~----~~~~~~~~~h~~~v~~~~fs~dg~---- 562 (577)
T 2ymu_A 493 LWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQTLTGHSSSVWGVAFSPDGQ---- 562 (577)
T ss_dssp EEETTS--CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----SCEEEEEECCSSCEEEEEECTTSS----
T ss_pred EEcCCC--CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC----CCEEEEEcCCCCCEEEEEEcCCCC----
Confidence 999653 33457788998887765 579999999999999999964 367888999999999999999998
Q ss_pred cccCCCccEEEEEeeCCCcEEEEE
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+|+|++.|++|++||
T Consensus 563 ---------~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 563 ---------TIASASSDKTVKLWN 577 (577)
T ss_dssp ---------CEEEEETTSCEEEEC
T ss_pred ---------EEEEEeCCCEEEEeC
Confidence 799999999999997
No 22
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.6e-39 Score=311.38 Aligned_cols=302 Identities=14% Similarity=0.158 Sum_probs=242.1
Q ss_pred cceeeeeeecccEEEEEecCCEEEEeeCCCcEEEeeCCc--------cccccccCcccEEEEEEeCC----C---CEEEE
Q 012007 114 GLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIISGD----S---NKIFT 178 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~~--------~~~~~~~h~~~V~~l~~s~~----~---~~l~s 178 (473)
.....+.+|.+.|.++++++++|++|+.||.|+|||... .+..+.+|...|.+++|+++ + ++|++
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 345678899999999999999999999999999998652 36677889999999999999 9 99999
Q ss_pred EeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec-----cCCeeEEEEc----CCCCE
Q 012007 179 GHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH-----YDAVSCLSLN----AEQGL 249 (473)
Q Consensus 179 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~----~~~~~ 249 (473)
++.||.|++||+.+++....... .....| ...|.+++|+ |++++
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 139 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIF---------------------------EKLDLLDSDMKKHSFWALKWGASNDRLLSH 139 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEE---------------------------EEECCSCTTGGGSCEEEEEEECCC----CE
T ss_pred EcCCCCEEEEEccCCcccccccc---------------------------eeecccccccCCCcEEEEEEeeccCCCCce
Confidence 99999999999987653100000 001125 5899999999 99999
Q ss_pred -EEEEeCCCCEEEEEcCC------CeeeE-----Ee-------ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCC
Q 012007 250 -LYSGSWDKTLKVWRISD------CKCLE-----SI-------NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 250 -l~s~s~dg~v~vwd~~~------~~~~~-----~~-------~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~ 310 (473)
|++++.||.|++||+.+ ++.+. .+ ..|...|.+++|++++++++++.||.|++||++..
T Consensus 140 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-- 217 (397)
T 1sq9_A 140 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL-- 217 (397)
T ss_dssp EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT--
T ss_pred EEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC--
Confidence 99999999999999998 66666 66 44889999999999888889999999999999732
Q ss_pred Ccceeeeeeecc---C---CccEEEEEEccCCCEEEEeCCC---CcEEEEecCCcccccceeec-------------Ccc
Q 012007 311 GTKHCLAQVLLK---H---ENAVTALAVNQESAVVYCGSSD---GLVNFWECEKHLSHGGVLRG-------------HKM 368 (473)
Q Consensus 311 ~~~~~~~~~~~~---~---~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~-------------~~~ 368 (473)
.....+.. | ...|.+++|+|++.+|++++.| |.|++||+++.... ..+.+ |..
T Consensus 218 ----~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 292 (397)
T 1sq9_A 218 ----RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHSSQASLGEFAHSS 292 (397)
T ss_dssp ----EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC--------CCBSBSS
T ss_pred ----ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc-ceeccCcccccccccccccCC
Confidence 23455556 8 8999999999999999999999 99999999876443 45555 888
Q ss_pred eEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEec------CC---------------CCceeEEEEecCCCCC
Q 012007 369 AVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLT------GH---------------TGPVKCLAVEEDRDHD 425 (473)
Q Consensus 369 ~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~h---------------~~~V~~l~~~~~~~~~ 425 (473)
.+.++.+ ++++|++++.||.|++||+.+ .+++..+. +| ...|++++|+|++...
T Consensus 293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~ 369 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKT---KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 369 (397)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTT---TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCC---CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence 8877665 599999999999999999988 56777777 77 9999999999997200
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.. ......+|++++.||.|++|++..+
T Consensus 370 ~~---~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 370 GM---GADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp ST---TCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cc---cccccceEEEecCCCcEEEEEcCCC
Confidence 00 0000008999999999999999875
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.2e-39 Score=311.14 Aligned_cols=258 Identities=24% Similarity=0.411 Sum_probs=226.5
Q ss_pred EEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEe
Q 012007 146 RVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224 (473)
Q Consensus 146 ~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (473)
..|... .....+.+|.++|++++|+|++++|++|+.||.|++||+.+++......
T Consensus 92 ~~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~------------------------ 147 (410)
T 1vyh_C 92 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK------------------------ 147 (410)
T ss_dssp CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC------------------------
T ss_pred cccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe------------------------
Confidence 345433 2345678999999999999999999999999999999999876543322
Q ss_pred ecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEE
Q 012007 225 RNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVW 303 (473)
Q Consensus 225 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vw 303 (473)
+|.+.|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ +|++|+.|+.|++|
T Consensus 148 --------~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~w 219 (410)
T 1vyh_C 148 --------GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219 (410)
T ss_dssp --------CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred --------ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 499999999999999999999999999999999999999999999999999999987 89999999999999
Q ss_pred eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-------
Q 012007 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA------- 376 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~------- 376 (473)
|++.+. ....+.+|...|.++.++|++.+|++++.|+.|++||+++... ...+.+|...+.++.+.
T Consensus 220 d~~~~~------~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~ 292 (410)
T 1vyh_C 220 EVQTGY------CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSS 292 (410)
T ss_dssp ETTTCC------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGG
T ss_pred ECCCCc------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce-eeEecCCCceEEEEEEcCcccccc
Confidence 997432 3456788999999999999999999999999999999987543 35677888888887764
Q ss_pred ---------------CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 377 ---------------GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 377 ---------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
+.+|++|+.|+.|++||+.+ ..++..+.+|...|++++|+|++. +|++|
T Consensus 293 ~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~---~~~~~~~~~h~~~v~~v~~~~~g~-------------~l~s~ 356 (410)
T 1vyh_C 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST---GMCLMTLVGHDNWVRGVLFHSGGK-------------FILSC 356 (410)
T ss_dssp GGGCCSCC-------CCEEEEEETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECSSSS-------------CEEEE
T ss_pred hhhhccccccccCCCCCEEEEEeCCCeEEEEECCC---CceEEEEECCCCcEEEEEEcCCCC-------------EEEEE
Confidence 56999999999999999998 578888999999999999999998 89999
Q ss_pred eCCCcEEEEEcCCCCCC
Q 012007 442 SLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 442 s~Dg~v~iW~i~~~~~~ 458 (473)
+.||.|++||+..+...
T Consensus 357 s~D~~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 357 ADDKTLRVWDYKNKRCM 373 (410)
T ss_dssp ETTTEEEEECCTTSCCC
T ss_pred eCCCeEEEEECCCCceE
Confidence 99999999999876543
No 24
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.9e-38 Score=303.95 Aligned_cols=287 Identities=15% Similarity=0.163 Sum_probs=230.7
Q ss_pred cceeeeeeecccEEEEEec--C-CEEEEeeCCCcEEEeeCCc--ccccc--ccCcccEEEEEEeC-CCCEEEEEeCCCeE
Q 012007 114 GLIGSIVRKEGHIYSLAAS--G-DLLYTGSDSKNIRVWKNLK--EFSGF--KSNSGLVKAIIISG-DSNKIFTGHQDGKI 185 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g-~~l~tg~~dg~i~vwd~~~--~~~~~--~~h~~~V~~l~~s~-~~~~l~s~~~dg~i 185 (473)
.+...+.+|.+.|.+++++ + ++|++|+.||.|+|||... ....+ .+|.+.|.+++|+| ++++|++++.||.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 4567889999999999876 5 7999999999999999762 23333 46999999999999 77999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
++||+.+.... ..... .+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus 144 ~iwd~~~~~~~-~~~~~-----------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~- 192 (383)
T 3ei3_B 144 TLRDFSGSVIQ-VFAKT-----------------------------DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL- 192 (383)
T ss_dssp EEEETTSCEEE-EEECC-----------------------------CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-
T ss_pred EEEECCCCceE-EEecc-----------------------------CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-
Confidence 99999853221 11110 025688999999999999999999999999999
Q ss_pred CCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEe
Q 012007 266 DCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCG 342 (473)
Q Consensus 266 ~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~ 342 (473)
+++.+..+..|...|.+++|+|++ ++++++.|+.|++||++.... .......+ .|...|.+++|+| ++.+|+++
T Consensus 193 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 193 DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD--KNSYIAEM-PHEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS--TTCEEEEE-ECSSCEEEEEECTTTSCEEEEE
T ss_pred CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc--ccceEEEe-cCCCceEEEEEcCCCCCEEEEE
Confidence 678889999999999999999987 799999999999999985332 11222223 6999999999999 99999999
Q ss_pred CCCCcEEEEecCCcccccceeecCc-------c----------eE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEE
Q 012007 343 SSDGLVNFWECEKHLSHGGVLRGHK-------M----------AV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCL 403 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~~~~-------~----------~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 403 (473)
+.|+.|++||+++..... .+.+|. . .+ .++++++++ +|+.|+.|++||+.+ .+++
T Consensus 270 ~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~---~~~~ 343 (383)
T 3ei3_B 270 DQRNEIRVYSSYDWSKPD-QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS---GGLV 343 (383)
T ss_dssp ESSSEEEEEETTBTTSCS-EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT---CCEE
T ss_pred cCCCcEEEEECCCCcccc-ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC---Ccee
Confidence 999999999998755442 333222 1 11 334456666 778999999999988 4667
Q ss_pred EEecC--CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 404 AVLTG--HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 404 ~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
..+.+ |...+..++|+|++. +|++|+ ||.|+||++.+
T Consensus 344 ~~l~~~~~~~~~~~~~~s~~g~-------------~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 344 HQLRDPNAAGIISLNKFSPTGD-------------VLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEECBTTBCSCCCEEEECTTSS-------------EEEEEE-TTEEEEEECC-
T ss_pred eeecCCCCCceEEEEEEecCcc-------------EEEEec-CCcEEEEecCC
Confidence 77776 567788889999998 899997 99999999875
No 25
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3e-39 Score=314.88 Aligned_cols=292 Identities=16% Similarity=0.182 Sum_probs=223.7
Q ss_pred cceeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCCc----cccccccCcccEEEEEEeC-CCCEEEEEeCCCeE
Q 012007 114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIISG-DSNKIFTGHQDGKI 185 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~~----~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i 185 (473)
.+.....+|...|+|++|+ +++||+|+.||.|+|||... ....+.+|.+.|++|+|+| ++++|++|+.||+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 3455677899999999985 56999999999999999652 2345678999999999998 68899999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
++||+++.......... .+...+.+++|++++.+|++|+.||.|++||++
T Consensus 190 ~iwd~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~ 239 (435)
T 4e54_B 190 RLQDFKGNILRVFASSD------------------------------TINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 239 (435)
T ss_dssp EEEETTSCEEEEEECCS------------------------------SCSCCCCCEEEETTTTEEEEECSSSBEEEEESS
T ss_pred EEeeccCCceeEEeccC------------------------------CCCccEEEEEECCCCCEEEEEeCCCcEeeeccC
Confidence 99999765432211110 144567899999999999999999999999985
Q ss_pred CCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC
Q 012007 266 DCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 266 ~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
++.+..+.+|...|.+++|+|++ ++++|+.|+.|++||++.... ........+|...|++++|+|++.+|++++
T Consensus 240 -~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 240 -GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG---KASFLYSLPHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp -SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS---SSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred -cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc---cceEEEeeeccccccceeECCCCCeeEEEc
Confidence 56677888999999999999886 788999999999999975432 112234567999999999999999999999
Q ss_pred CCCcEEEEecCCcccccceeecCcc-------e-EEEEEecCCEEEEEe------------CCCcEEEEecCCCCceeEE
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKM-------A-VLCLAAAGNLVFSGS------------ADRNICLWRREESGAHSCL 403 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~-------~-v~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~ 403 (473)
.||.|++||+++..... .+..|.. . -..+.+++.+++++. .++.|++||..+ ..++
T Consensus 316 ~D~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~---g~~~ 391 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPL-GLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS---GKMM 391 (435)
T ss_dssp SSSCEEEEESSSSSSEE-EECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS---CCEE
T ss_pred CCCEEEEEECCCCccce-EEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC---CcEE
Confidence 99999999998754332 2222221 1 123334455555443 346799999988 3555
Q ss_pred EEe-cCCCCceeEE-EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 404 AVL-TGHTGPVKCL-AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 404 ~~~-~~h~~~V~~l-~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
..+ .+|...|.++ +|+|++. +|++|+ |+.|+||++.++++
T Consensus 392 ~~l~~~~~~~v~s~~~fspdg~-------------~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 392 CQLYDPESSGISSLNEFNPMGD-------------TLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEECCSSCCCCCCEEEECTTSS-------------CEEEEC-SSEEEECCCC----
T ss_pred EEEeCCCCCcEEEEEEECCCCC-------------EEEEEc-CCcEEEEECCcCee
Confidence 554 4788889887 6999998 788876 88999999988754
No 26
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-38 Score=303.79 Aligned_cols=297 Identities=16% Similarity=0.185 Sum_probs=237.1
Q ss_pred eeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc----cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 119 IVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 119 l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~----~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
+..|.+.|.++++ ++++|++|+.||.|++||... .+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 3457888888776 588999999999999998653 5677889999999999999999999999999999999977
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee---
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC--- 269 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~--- 269 (473)
++....... ..|...|.+++|+|++++|++++.|+.|++||+..++.
T Consensus 84 ~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 133 (372)
T 1k8k_C 84 RTWKPTLVI------------------------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 133 (372)
T ss_dssp TEEEEEEEC------------------------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred CeeeeeEEe------------------------------ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee
Confidence 653332221 13888999999999999999999999999999988762
Q ss_pred eE-EeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCC------------CcceeeeeeeccCCccEEEEEEccC
Q 012007 270 LE-SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK------------GTKHCLAQVLLKHENAVTALAVNQE 335 (473)
Q Consensus 270 ~~-~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~~~~v~~l~~~~~ 335 (473)
.. ....|...|.+++|++++ +|++++.||.|++||++.... .........+..|...|.+++|+|+
T Consensus 134 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 213 (372)
T ss_dssp EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC
Confidence 23 335689999999999987 899999999999999752210 0122345566689999999999999
Q ss_pred CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCC--CC-------------
Q 012007 336 SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREE--SG------------- 398 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~--~~------------- 398 (473)
+.+|++++.||.|++||+++... ...+..|...+.++ ++++.+|++| .|+.|++|++.. +.
T Consensus 214 ~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 291 (372)
T 1k8k_C 214 GSRVAWVSHDSTVCLADADKKMA-VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQS 291 (372)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTE-EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC---
T ss_pred CCEEEEEeCCCEEEEEECCCCce-eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccc
Confidence 99999999999999999987644 35666787777655 5568888877 899999999977 21
Q ss_pred ----------------ceeEE------EEe-cCCCCceeEEEEec-CC---CCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 399 ----------------AHSCL------AVL-TGHTGPVKCLAVEE-DR---DHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 399 ----------------~~~~~------~~~-~~h~~~V~~l~~~~-~~---~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
..... ..+ .+|...|++++|.+ ++ . +|+||+.||.|++|+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-------------~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 292 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-------------QFCTTGMDGGMSIWD 358 (372)
T ss_dssp -----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-------------EEEEEETTSEEEEEE
T ss_pred hhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee-------------eEEEecCCCceEEEE
Confidence 01111 233 48999999999775 44 5 899999999999999
Q ss_pred cCCCCCCcc
Q 012007 452 VSEHAPDLK 460 (473)
Q Consensus 452 i~~~~~~~~ 460 (473)
+..++..++
T Consensus 359 ~~~~~~~~~ 367 (372)
T 1k8k_C 359 VRSLESALK 367 (372)
T ss_dssp HHHHHHHCT
T ss_pred ecChhHhhh
Confidence 987655444
No 27
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-38 Score=294.83 Aligned_cols=251 Identities=22% Similarity=0.302 Sum_probs=216.3
Q ss_pred cccccCcccEEEEEEeCC----CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 155 SGFKSNSGLVKAIIISGD----SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
..+.+|.+.|.+++|+++ +.+|++|+.|++|+||++..........
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~------------------------------ 75 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS------------------------------ 75 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEE------------------------------
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeee------------------------------
Confidence 356789999999999875 5799999999999999987664332222
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccC
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~ 309 (473)
..+|...|.+++|++++.++++++.|++|++||+.+++.+..+..|...+.+++|+|++ +|++++.||.|++||++...
T Consensus 76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~ 155 (321)
T 3ow8_A 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155 (321)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence 12599999999999999999999999999999999999999999999999999999998 89999999999999997432
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCC
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADR 387 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg 387 (473)
....+..|...|.+++|+|++++|++++.||.|++||++++.. ...+.+|...+.++. +++++|++|+.|+
T Consensus 156 ------~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 156 ------KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp ------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCCCEEEECTTSCEEEEECTTS
T ss_pred ------eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-EEEEcccCCceeEEEEcCCCCEEEEEcCCC
Confidence 2345667888999999999999999999999999999987644 356678887775554 5799999999999
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.|++||+.. ..++..+.+|...|.+++|+|++. +|++++.|++|+|||+.++...
T Consensus 229 ~i~iwd~~~---~~~~~~~~~h~~~v~~~~~sp~~~-------------~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 229 YIKIYDVQH---ANLAGTLSGHASWVLNVAFCPDDT-------------HFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp CEEEEETTT---CCEEEEECCCSSCEEEEEECTTSS-------------EEEEEETTSCEEEEETTTTEEE
T ss_pred eEEEEECCC---cceeEEEcCCCCceEEEEECCCCC-------------EEEEEeCCCcEEEEeCCCCEEE
Confidence 999999988 567888999999999999999998 8999999999999999876543
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.9e-37 Score=289.83 Aligned_cols=279 Identities=17% Similarity=0.291 Sum_probs=233.7
Q ss_pred eeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCcc-----ccccc--cCcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 118 SIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-----FSGFK--SNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 118 ~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~-----~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
...+|.+.|.++++ ++++|++++ ||.|++||.... +..+. .|...|.+++|+|++++|++++.||.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 34479999988876 488999999 999999997532 22222 789999999999999999999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
|+.+++....... ..|...|.+++|+|++++|++++.|+.|++||+++++
T Consensus 125 d~~~~~~~~~~~~------------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 125 DLAAPTPRIKAEL------------------------------TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp ECCCC--EEEEEE------------------------------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred ECCCCCcceeeec------------------------------ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 9987753222221 1388899999999999999999999999999999999
Q ss_pred eeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 269 ~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
.+..+..|...+.+++|+|++ .+++++.||.|++||++... . . ....+...+.+++|+|++++|++++.|+.
T Consensus 175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~-~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 247 (337)
T 1gxr_A 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-----Q-L-QQHDFTSQIFSLGYCPTGEWLAVGMESSN 247 (337)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----E-E-EEEECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc-----e-E-eeecCCCceEEEEECCCCCEEEEEcCCCc
Confidence 999999999999999999988 89999999999999997432 1 1 22357788999999999999999999999
Q ss_pred EEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 348 VNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
|++||+++... ..+..|...+.++.+ ++++|++++.||.|++||+.++ ..+.. ..|...|.+++|+|++.
T Consensus 248 i~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~---~~~~~-~~~~~~v~~~~~s~~~~-- 319 (337)
T 1gxr_A 248 VEVLHVNKPDK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQ-SKESSSVLSCDISVDDK-- 319 (337)
T ss_dssp EEEEETTSSCE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEE-EECSSCEEEEEECTTSC--
T ss_pred EEEEECCCCCe--EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC---eEEEE-ecCCCcEEEEEECCCCC--
Confidence 99999987644 356678888876665 5899999999999999999884 33333 35788999999999998
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+|++++.||.|++|++.
T Consensus 320 -----------~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 320 -----------YIVTGSGDKKATVYEVI 336 (337)
T ss_dssp -----------EEEEEETTSCEEEEEEE
T ss_pred -----------EEEEecCCCeEEEEEEe
Confidence 89999999999999973
No 29
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.8e-37 Score=313.46 Aligned_cols=280 Identities=26% Similarity=0.443 Sum_probs=243.9
Q ss_pred cceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
..+..+.+|.+.|.++++ ++++|++++.|+.|++||.. +.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~ 332 (577)
T 2ymu_A 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 332 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 456678889999998876 58899999999999999965 456678899999999999999999999999999999998
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
....... ..+|...|.+++|+|++++|++|+.|+.|++||. +++.+
T Consensus 333 ~~~~~~~---------------------------------~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~ 378 (577)
T 2ymu_A 333 NGQHLQT---------------------------------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLL 378 (577)
T ss_dssp TSCEEEE---------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEE
T ss_pred CCCeeEE---------------------------------EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEE
Confidence 6543211 1138899999999999999999999999999995 67888
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
..+..|...|.+++|+|++ +|++++.|+.|++||.. ......+..|...|++++|+|++++|++++.|+.|+
T Consensus 379 ~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-------CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-------CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence 8999999999999999998 89999999999999963 123566788999999999999999999999999999
Q ss_pred EEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcc
Q 012007 350 FWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 427 (473)
+||... .....+.+|...+.+++ +++++|++++.|+.|++||... +++..+.+|...|++++|+|+++
T Consensus 452 ~w~~~~--~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~----~~~~~~~~h~~~v~~l~~s~dg~---- 521 (577)
T 2ymu_A 452 LWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQ---- 521 (577)
T ss_dssp EEETTS--CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSS----
T ss_pred EEECCC--CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC----CEEEEEeCCCCCEEEEEEcCCCC----
Confidence 999754 23356778888887665 5799999999999999999643 67888999999999999999998
Q ss_pred cccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+|++++.||.|+|||..
T Consensus 522 ---------~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 522 ---------TIASASDDKTVKLWNRN 538 (577)
T ss_dssp ---------CEEEEETTSEEEEECTT
T ss_pred ---------EEEEEECcCEEEEEeCC
Confidence 89999999999999964
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.2e-38 Score=297.47 Aligned_cols=289 Identities=16% Similarity=0.202 Sum_probs=232.4
Q ss_pred eeeeecccEEEEEec------CCEEEEeeCCCcEEEeeCC--cccccccc-----CcccEEEEEEeCC----CCEEEEEe
Q 012007 118 SIVRKEGHIYSLAAS------GDLLYTGSDSKNIRVWKNL--KEFSGFKS-----NSGLVKAIIISGD----SNKIFTGH 180 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~------g~~l~tg~~dg~i~vwd~~--~~~~~~~~-----h~~~V~~l~~s~~----~~~l~s~~ 180 (473)
...+|.+.|.+++++ ..++++++.++.|+|||.. +.+..+.. |...|.+++|+|+ +++|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 445899999999987 3456666667799999966 23333332 6688999999999 67999999
Q ss_pred CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCE
Q 012007 181 QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTL 259 (473)
Q Consensus 181 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v 259 (473)
.||.|++||+.+++...... +|...|.+++|+| ++.+|++|+.||.|
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~--------------------------------~~~~~i~~~~~~~~~~~~l~s~~~dg~i 140 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYV--------------------------------GHGNAINELKFHPRDPNLLLSVSKDHAL 140 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEE--------------------------------SCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCCEEEEEEchhceEeeeec--------------------------------CCCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999998876543322 3899999999999 99999999999999
Q ss_pred EEEEcCCCeeeEEe---ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc----------------------
Q 012007 260 KVWRISDCKCLESI---NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK---------------------- 313 (473)
Q Consensus 260 ~vwd~~~~~~~~~~---~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~---------------------- 313 (473)
++||+++++.+..+ ..|...|.+++|+|++ +|++++.||.|++||++.......
T Consensus 141 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (366)
T 3k26_A 141 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH 220 (366)
T ss_dssp EEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred EEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence 99999999999888 6899999999999987 899999999999999974321000
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc-------------ccceeecCcceE--EEEEec--
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS-------------HGGVLRGHKMAV--LCLAAA-- 376 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~v--~~~~~~-- 376 (473)
.........|...|.+++|+ +++|++++.||.|++||+++... ....+.+|...+ .+++++
T Consensus 221 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 298 (366)
T 3k26_A 221 FPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW 298 (366)
T ss_dssp CCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT
T ss_pred cCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC
Confidence 00112233489999999999 77999999999999999876533 123444565555 455677
Q ss_pred CCEEEEEeCCCcEEEEecCCCCce-eEEEEecCC--CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 377 GNLVFSGSADRNICLWRREESGAH-SCLAVLTGH--TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 377 ~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h--~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+++|++|+.||.|++||+.++... .....+.+| ...|++++|+|++. +|++++.||.|++||+.
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-------------ILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS-------------EEEEEETTSEEEEEEC-
T ss_pred CcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC-------------eEEEEeCCCEEEEEEec
Confidence 999999999999999999985433 255677777 78999999999998 89999999999999985
No 31
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.7e-37 Score=302.77 Aligned_cols=287 Identities=21% Similarity=0.318 Sum_probs=243.2
Q ss_pred ceeeeeeeccc-EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 115 LIGSIVRKEGH-IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 115 ~~~~l~~h~~~-V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
....+.+|.+. +.++.+++++|++|+.||+|++||.. +.+..+.+|.+.|.+++|++++ +|++|+.||.|++||+.
T Consensus 113 ~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred ceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 35678899887 57899999999999999999999965 5567788999999999999988 99999999999999998
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEc--CCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN--AEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
+++...... +|...|.+++|+ +++.+|++|+.|+.|++||+.+++.
T Consensus 192 ~~~~~~~~~--------------------------------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 192 KGCCTHVFE--------------------------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp TTEEEEEEC--------------------------------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred CCcEEEEEC--------------------------------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence 876433222 489999999998 5788999999999999999987652
Q ss_pred -----------------------eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCcc
Q 012007 270 -----------------------LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA 326 (473)
Q Consensus 270 -----------------------~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
+..+.+|...+.++... ..++++++.||.|++||++. ......+.+|...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~------~~~~~~~~~~~~~ 312 (464)
T 3v7d_B 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQ------MKCLYILSGHTDR 312 (464)
T ss_dssp C------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTT------TEEEEEECCCSSC
T ss_pred cccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC-CCEEEEEeCCCeEEEEECCC------CcEEEEecCCCCC
Confidence 45677888888888532 34899999999999999963 2345667789999
Q ss_pred EEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe
Q 012007 327 VTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL 406 (473)
Q Consensus 327 v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 406 (473)
|.+++|+|++++|++|+.||.|++||++++.. ...+.+|...+.++.+++.+|++|+.||.|++||+.+. ......
T Consensus 313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~---~~~~~~ 388 (464)
T 3v7d_B 313 IYSTIYDHERKRCISASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY---SRKFSY 388 (464)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTC---CEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCC---ceeeee
Confidence 99999999999999999999999999987644 45677899999999999999999999999999999884 333333
Q ss_pred cCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 407 ~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
.|...+..++|++++. +|++|+ ||.|++||+.+++....
T Consensus 389 -~~~~~~~~~~~~~~~~-------------~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 389 -HHTNLSAITTFYVSDN-------------ILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp -ECTTCCCEEEEEECSS-------------EEEEEE-TTEEEEEETTTCCEEES
T ss_pred -cCCCCccEEEEEeCCC-------------EEEEec-CCeEEEEECCCCcEEeh
Confidence 3667788999999998 888888 89999999998876543
No 32
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=308.17 Aligned_cols=297 Identities=18% Similarity=0.276 Sum_probs=225.0
Q ss_pred cceeee-eeecccEEEEEe---cCCEEEEeeCCCcEEEeeCCc---c--c-cccc-cCcccEEEEEEeCCCCEEEEEeCC
Q 012007 114 GLIGSI-VRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLK---E--F-SGFK-SNSGLVKAIIISGDSNKIFTGHQD 182 (473)
Q Consensus 114 ~~~~~l-~~h~~~V~~~~~---~g~~l~tg~~dg~i~vwd~~~---~--~-~~~~-~h~~~V~~l~~s~~~~~l~s~~~d 182 (473)
.++..+ .+|.+.|.++++ ++++||+|+.||+|+|||... . . ..+. .|.+.|.+++|+|++++|++|+.|
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCC
Confidence 456677 789999999876 568999999999999998643 1 1 1222 589999999999999999999999
Q ss_pred CeEEEEeCC---CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee--ccCCeeEEE--EcCCCCEEEEEeC
Q 012007 183 GKIRIWKVS---RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR--HYDAVSCLS--LNAEQGLLYSGSW 255 (473)
Q Consensus 183 g~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~--~~~~~~~l~s~s~ 255 (473)
|.|++||+. .++......... .....+.. +...+.++. +++++.+|++|+.
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~----------------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCEC----------------------IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN 190 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEE----------------------EEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred CEEEEEEeccccCCceeeccccce----------------------eEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence 999999995 333322211100 00000001 566788888 6689999999999
Q ss_pred CCCEEEEEcCCCeeeEEeec--CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeee-ccCCccEEEEE
Q 012007 256 DKTLKVWRISDCKCLESINA--HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVL-LKHENAVTALA 331 (473)
Q Consensus 256 dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~ 331 (473)
|+.|++||+++++++..+.. |...|.+++|+|++ +|++|+.||.|++||++. .. ....+ ..|...|++++
T Consensus 191 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-----~~-~~~~~~~~~~~~v~~~~ 264 (437)
T 3gre_A 191 LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-----NV-LIRSWSFGDHAPITHVE 264 (437)
T ss_dssp TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-----TE-EEEEEBCTTCEEEEEEE
T ss_pred CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-----cc-EEEEEecCCCCceEEEE
Confidence 99999999999999999988 89999999999988 899999999999999973 22 23333 37788999996
Q ss_pred Ecc----CCCEEEEeCCCCcEEEEecCCccccccee-----------------------ec--CcceEEEEEe-cCCEEE
Q 012007 332 VNQ----ESAVVYCGSSDGLVNFWECEKHLSHGGVL-----------------------RG--HKMAVLCLAA-AGNLVF 381 (473)
Q Consensus 332 ~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------------------~~--~~~~v~~~~~-~~~~l~ 381 (473)
|+| ++.+|++++.||.|++||++++....... .+ |...+.++++ ++++|+
T Consensus 265 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~ 344 (437)
T 3gre_A 265 VCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILL 344 (437)
T ss_dssp ECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEE
T ss_pred eccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEE
Confidence 664 67799999999999999998654322111 12 5555655554 467999
Q ss_pred EEeCCCcEEEEecCCCCceeEEEE----------------------------------ecCCCCceeEEEEecC--CCCC
Q 012007 382 SGSADRNICLWRREESGAHSCLAV----------------------------------LTGHTGPVKCLAVEED--RDHD 425 (473)
Q Consensus 382 s~~~dg~i~iwd~~~~~~~~~~~~----------------------------------~~~h~~~V~~l~~~~~--~~~~ 425 (473)
+|+.|+.|++||+.++.....+.. ...|...|++++|.++ +.
T Consensus 345 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~-- 422 (437)
T 3gre_A 345 TDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETP-- 422 (437)
T ss_dssp EEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSE--
T ss_pred ecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCce--
Confidence 999999999999987432222211 1238999999999998 44
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEE
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+|++|+.||.|+||+
T Consensus 423 -----------~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 423 -----------LLVACDNSGLIGIFQ 437 (437)
T ss_dssp -----------EEEEEETTSCEEEEC
T ss_pred -----------EEEEEcCCceEEEeC
Confidence 899999999999995
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=292.24 Aligned_cols=240 Identities=16% Similarity=0.178 Sum_probs=200.3
Q ss_pred eeeeeecccEEEEEec-CCEEEEeeCCCcEEEeeCCc--ccc----ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 117 GSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNLK--EFS----GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~--~~~----~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.....|+..|.+++|+ .+.|++|+.||+|+|||+.. .+. .+.+|.+.|++|+|+|+|++|++|+.||.|++||
T Consensus 76 ~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 76 SAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp SEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 3445577889999986 46899999999999999653 222 3457999999999999999999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEEcCCCe
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~~~~~ 268 (473)
+.+++...... +|...|.+++|++++ .+|++|+.|++|++||+++++
T Consensus 156 ~~~~~~~~~~~--------------------------------~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~ 203 (344)
T 4gqb_B 156 LAQQVVLSSYR--------------------------------AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203 (344)
T ss_dssp TTTTEEEEEEC--------------------------------CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS
T ss_pred CCCCcEEEEEc--------------------------------CcCCceEEEEecCCCCCceeeeccccccccccccccc
Confidence 99876543332 499999999999987 578999999999999999999
Q ss_pred eeEEee--cCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeC
Q 012007 269 CLESIN--AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGS 343 (473)
Q Consensus 269 ~~~~~~--~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~ 343 (473)
++..+. .|...+.+++|+|++ +|++|+.||.|++||++.. .....+.+|...|++++|+|++ ++|++|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs 277 (344)
T 4gqb_B 204 PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST------SCVLSSAVHSQCVTGLVFSPHSVPFLASLS 277 (344)
T ss_dssp CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC------cEEEEEcCCCCCEEEEEEccCCCeEEEEEe
Confidence 888774 456678999999864 7889999999999999743 2456778999999999999997 6899999
Q ss_pred CCCcEEEEecCCcccccceeecCcceEEEEEe--cC-CEEEEEeCCCcEEEEecCC
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AG-NLVFSGSADRNICLWRREE 396 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~iwd~~~ 396 (473)
.|+.|+|||++++... .+.+|...|.++++ ++ .+|++|+.|++|++|++.+
T Consensus 278 ~D~~i~vwd~~~~~~~--~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 278 EDCSLAVLDSSLSELF--RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp TTSCEEEECTTCCEEE--EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred CCCeEEEEECCCCcEE--EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999999999876543 56789999988876 45 4788999999999999987
No 34
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-37 Score=303.04 Aligned_cols=280 Identities=25% Similarity=0.421 Sum_probs=233.4
Q ss_pred eeecccEEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeee
Q 012007 120 VRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASV 197 (473)
Q Consensus 120 ~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 197 (473)
.+|...|+++++++++|++|+.||.|++||.. +....+.+|.+.|.+++| ++++|++|+.||.|++||+.+++...
T Consensus 130 ~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 130 SETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp CSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred cCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 45667799999999999999999999999965 456778899999999999 77899999999999999999886543
Q ss_pred EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee---EEee
Q 012007 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL---ESIN 274 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~---~~~~ 274 (473)
... +|...|.+++|++ ++|++|+.||.|++||+.+++.+ ..+.
T Consensus 208 ~~~--------------------------------~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 253 (435)
T 1p22_A 208 TLI--------------------------------HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLV 253 (435)
T ss_dssp EEC--------------------------------CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEEC
T ss_pred EEc--------------------------------CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEec
Confidence 322 3889999999964 69999999999999999987665 6778
Q ss_pred cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
+|...|.++.+ ...++++|+.||.|++||++.. .....+..|...|.+++++ +.++++|+.||.|++||++
T Consensus 254 ~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 254 GHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTC------EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp CCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred CCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcC------cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECC
Confidence 89999999999 4459999999999999999743 2456677899999999994 6799999999999999999
Q ss_pred CcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCc------eeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 355 KHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGA------HSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 355 ~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
++.. ...+.+|...+.++.+++.+|++|+.||.|++||+..... ..++..+.+|.+.|++++| ++.
T Consensus 325 ~~~~-~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~----- 396 (435)
T 1p22_A 325 CGAC-LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF----- 396 (435)
T ss_dssp TCCE-EEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSS-----
T ss_pred CCCE-EEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCC-----
Confidence 8644 3567789999999999999999999999999999875221 1278889999999999999 455
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+|++|+.||.|++||+........
T Consensus 397 --------~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 397 --------QIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp --------CEEECCSSSEEEEEC---------
T ss_pred --------EEEEEeCCCEEEEEECCCCCCccc
Confidence 799999999999999988765433
No 35
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.7e-37 Score=294.11 Aligned_cols=296 Identities=15% Similarity=0.206 Sum_probs=236.5
Q ss_pred cceeeeeeecccEEEEEe---cCCEEEEeeCCCcEEEeeCCcc--cccc-------------ccCcccEEEEEEeC-CCC
Q 012007 114 GLIGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKE--FSGF-------------KSNSGLVKAIIISG-DSN 174 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~---~g~~l~tg~~dg~i~vwd~~~~--~~~~-------------~~h~~~V~~l~~s~-~~~ 174 (473)
.....+.+|.+.|.++++ ++++|++|+.||.|++||.... ...+ .+|...|.+++|+| +++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 445677889999999887 5789999999999999997632 2222 35999999999999 778
Q ss_pred EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC---CCEEE
Q 012007 175 KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE---QGLLY 251 (473)
Q Consensus 175 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~ 251 (473)
+|++++.||.|++||+.+++...... +...+.++.|.+. +.+++
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFN---------------------------------FEETVYSHHMSPVSTKHCLVA 160 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEE---------------------------------CSSCEEEEEECSSCSSCCEEE
T ss_pred EEEEEeCCCeEEEeeCCCCccceecc---------------------------------CCCceeeeEeecCCCCCcEEE
Confidence 99999999999999998876543332 6778999999984 45999
Q ss_pred EEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCc----------ceeeeee
Q 012007 252 SGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGT----------KHCLAQV 319 (473)
Q Consensus 252 s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~----------~~~~~~~ 319 (473)
+++.|+.|++||+++++.+..+..|...|.+++|+|++ ++++++.||.|++||++...... .......
T Consensus 161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
T 4a11_B 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240 (408)
T ss_dssp EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence 99999999999999999999999999999999999997 58899999999999997543110 1111223
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-----CcceEEEEE-ecCCEEEEEeCCCcEEEEe
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-----HKMAVLCLA-AAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~-~~~~~l~s~~~dg~i~iwd 393 (473)
...|...|.+++|+|++++|++++.||.|++||+++.......... .......+. ..+..+++++.|+.|++||
T Consensus 241 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 320 (408)
T 4a11_B 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320 (408)
T ss_dssp SCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred cccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence 3678899999999999999999999999999999875443221110 011112222 2356677778899999999
Q ss_pred cCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 394 REESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+.+ ..++..+.+|...|++++|+|++. +|++++.||.|++|++...++.
T Consensus 321 ~~~---~~~~~~~~~~~~~v~~~~~s~~~~-------------~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 321 VYS---GEQITMLKGHYKTVDCCVFQSNFQ-------------ELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp TTT---CCEEEEECCCSSCEEEEEEETTTT-------------EEEEEETTSCEEEEEECC----
T ss_pred CcC---CcceeeeccCCCeEEEEEEcCCCC-------------EEEEECCCCeEEEEeCCCCCcc
Confidence 998 578889999999999999999998 8999999999999999987654
No 36
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.6e-37 Score=295.62 Aligned_cols=287 Identities=19% Similarity=0.258 Sum_probs=228.8
Q ss_pred eeeccc--EEEEEecCCEEEEeeCCCcEEEeeCCc--ccccccc-CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q 012007 120 VRKEGH--IYSLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKS-NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 120 ~~h~~~--V~~~~~~g~~l~tg~~dg~i~vwd~~~--~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
.+|... +.++++++..+++++.||.|++||... ....+.. |...|.+++|+|++++|++|+.||.|++||+.+++
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence 344443 566888888899999999999999753 2333333 78999999999999999999999999999998876
Q ss_pred eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC-CCeeeEEe
Q 012007 195 ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS-DCKCLESI 273 (473)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~-~~~~~~~~ 273 (473)
...... +|...|.+++| ++.+|++|+.||.|++||++ ....+..+
T Consensus 168 ~~~~~~--------------------------------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 213 (401)
T 4aez_A 168 KLRTMA--------------------------------GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTL 213 (401)
T ss_dssp EEEEEC--------------------------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred EEEEec--------------------------------CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEE
Confidence 543332 38999999999 45799999999999999998 56778889
Q ss_pred ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeC--CCCcEE
Q 012007 274 NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGS--SDGLVN 349 (473)
Q Consensus 274 ~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~--~dg~i~ 349 (473)
..|...|.+++|++++ +|++++.||.|++||++.. .....+..|...|.+++|+|++ .++++++ .|+.|+
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~ 287 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEE
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEE
Confidence 9999999999999987 8999999999999999742 2345567899999999999976 5666654 799999
Q ss_pred EEecCCcccccceeecCcceEEEE--EecCCEEEE--EeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 350 FWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFS--GSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
+||++++....... +...+.++ ++++++|++ |+.||.|++|++.++ .......+.+|...|.+++|+|++.
T Consensus 288 i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-~~~~~~~~~~h~~~v~~~~~s~dg~-- 362 (401)
T 4aez_A 288 FWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-GLTKQVDIPAHDTRVLYSALSPDGR-- 362 (401)
T ss_dssp EEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-EEEEEEEEECCSSCCCEEEECTTSS--
T ss_pred EEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-cceeEEEecCCCCCEEEEEECCCCC--
Confidence 99998765543332 44455554 567999998 448999999999873 2344556779999999999999998
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
+|++++.||.|++|++.+++...+..
T Consensus 363 -----------~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 363 -----------ILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp -----------EEEEECTTSEEEEEECCC--------
T ss_pred -----------EEEEEeCCCcEEEEECCCCccccccc
Confidence 89999999999999999887655443
No 37
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-36 Score=296.18 Aligned_cols=280 Identities=28% Similarity=0.468 Sum_probs=243.3
Q ss_pred ceeeeeeeccc-EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 115 LIGSIVRKEGH-IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 115 ~~~~l~~h~~~-V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
....+.+|.+. +.++.++|++|++|+.||+|++||.. +.+..+.+|.+.|.+++|+ +++|++|+.||.|++||+.
T Consensus 110 ~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp CCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred eeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 45678899986 58899999999999999999999965 5567888999999999998 4599999999999999998
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
+++...... +|...|.++.|+ ++.|++|+.||.|++||+.+++.+.
T Consensus 188 ~~~~~~~~~--------------------------------~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~ 233 (445)
T 2ovr_B 188 TGECIHTLY--------------------------------GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH 233 (445)
T ss_dssp TTEEEEEEC--------------------------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE
T ss_pred cCcEEEEEC--------------------------------CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE
Confidence 876443322 488999999995 5789999999999999999999999
Q ss_pred EeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 272 SINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
.+..|...|.++.+ .+..+++|+.||.|++||++.. .....+..|...|.+++| ++.++++++.||.|++|
T Consensus 234 ~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~ 304 (445)
T 2ovr_B 234 VLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETE------TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW 304 (445)
T ss_dssp EEECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGT------EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred EEcCCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCC------cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEE
Confidence 99999999999999 4458999999999999998632 345667789999999999 78899999999999999
Q ss_pred ecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC---CCCceeEEEEecCCCCCccc
Q 012007 352 ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG---HTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~~~~~ 428 (473)
|++++... ..+.+|...+.++.+++++|++|+.||.|++||+.+ ..++..+.+ |...|++++|++ .
T Consensus 305 d~~~~~~~-~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~--~----- 373 (445)
T 2ovr_B 305 DVETGNCI-HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT---GQCLQTLQGPNKHQSAVTCLQFNK--N----- 373 (445)
T ss_dssp ETTTCCEE-EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTT---CCEEEEECSTTSCSSCEEEEEECS--S-----
T ss_pred ECCCCCEE-EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCC---CcEEEEEccCCCCCCCEEEEEECC--C-----
Confidence 99886443 567789999999999999999999999999999988 456666665 889999999964 3
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+|++|+.||.|++||+.+++..
T Consensus 374 --------~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 374 --------FVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp --------EEEEEETTSEEEEEETTTCCEE
T ss_pred --------EEEEEeCCCeEEEEECCCCcee
Confidence 8999999999999999987643
No 38
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-37 Score=290.19 Aligned_cols=259 Identities=20% Similarity=0.317 Sum_probs=216.9
Q ss_pred cccccccCcc-cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 153 EFSGFKSNSG-LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 153 ~~~~~~~h~~-~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
.+..+.+|.+ .|.+++|+|+|++|++|+.|+.|+|||+.++........ .
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~-----------------------------~ 57 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL-----------------------------S 57 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE-----------------------------C
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee-----------------------------c
Confidence 4566788987 999999999999999999999999999877643222111 1
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC--eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCccc
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC--KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~--~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~ 308 (473)
.+|...|.+++|+|++++|++|+.|++|++||+..+ +++..+.+|...|.+++|+|++ +|++|+.|+.|++||++..
T Consensus 58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~ 137 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE 137 (345)
T ss_dssp SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence 249999999999999999999999999999999876 4678889999999999999988 9999999999999999743
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc-cccceeecCcceEEEEEe--cCCEEEEEeC
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL-SHGGVLRGHKMAVLCLAA--AGNLVFSGSA 385 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 385 (473)
. .......+..|...|.+++|+|++.+|++++.|+.|++||.+... .....+.+|...|.++++ ++++|++|+.
T Consensus 138 ~---~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 138 D---EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp S---CEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred C---CeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence 2 223455678899999999999999999999999999999987643 233567789988877765 6899999999
Q ss_pred CCcEEEEecCCCC------------ceeEEEEecC-CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 386 DRNICLWRREESG------------AHSCLAVLTG-HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 386 dg~i~iwd~~~~~------------~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
|++|+||+..... ...++..+.+ |...|.+++|++++. .|++++.|+.|++|++
T Consensus 215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-------------~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-------------ALATACGDDAIRVFQE 281 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-------------CEEEEETTSCEEEEEE
T ss_pred CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-------------EEEEEeCCCeEEEEEe
Confidence 9999999974321 2345566665 889999999999998 7999999999999998
Q ss_pred CCCC
Q 012007 453 SEHA 456 (473)
Q Consensus 453 ~~~~ 456 (473)
....
T Consensus 282 ~~~~ 285 (345)
T 3fm0_A 282 DPNS 285 (345)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 7654
No 39
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.1e-37 Score=284.04 Aligned_cols=253 Identities=17% Similarity=0.226 Sum_probs=207.3
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
..+.+|.+.|.+++|+|+|++|++|+.|+.|+|||+........ ..+.+|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~------------------------------~~l~gH 52 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLI------------------------------DTLTGH 52 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCC------------------------------EEECCC
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEE------------------------------EEEccc
Confidence 45678999999999999999999999999999999975421111 112259
Q ss_pred cCCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCCCe--eeEEeecCCCceeEEEEcCC--C-EEEEEeCCCcEEEEeCcc
Q 012007 235 YDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISDCK--CLESINAHDDAINSVVAGFD--S-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 235 ~~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~-~l~s~~~dg~i~vwd~~~ 307 (473)
.+.|.+++|++ ++++|++|+.|++|++||+++++ .+..+..|...|.+++|+|+ + +|++++.|+.|++||++.
T Consensus 53 ~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~ 132 (297)
T 2pm7_B 53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE 132 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence 99999999986 38999999999999999998874 56677889999999999996 4 899999999999999974
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccC-------------CCEEEEeCCCCcEEEEecCCccc---ccceeecCcceEE
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQE-------------SAVVYCGSSDGLVNFWECEKHLS---HGGVLRGHKMAVL 371 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~-------------~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~ 371 (473)
... .....+.+|...|.+++|+|+ +++|++|+.|+.|++||+++... ....+.+|...|.
T Consensus 133 ~~~----~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~ 208 (297)
T 2pm7_B 133 NGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (297)
T ss_dssp SSC----BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred CCc----eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence 321 113456789999999999997 57999999999999999976432 3346778999998
Q ss_pred EEEec-----CCEEEEEeCCCcEEEEecCCCCceeEEEEe--cCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC
Q 012007 372 CLAAA-----GNLVFSGSADRNICLWRREESGAHSCLAVL--TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD 444 (473)
Q Consensus 372 ~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D 444 (473)
+++++ +.+|++|+.|++|+|||+...........+ ..|...|.+++|+|++. +|++++.|
T Consensus 209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-------------~las~~~D 275 (297)
T 2pm7_B 209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-------------VLALSGGD 275 (297)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-------------CEEEEETT
T ss_pred EEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC-------------EEEEEcCC
Confidence 87764 378999999999999999863221222333 57889999999999998 89999999
Q ss_pred CcEEEEEcCC
Q 012007 445 KSVKVWRVSE 454 (473)
Q Consensus 445 g~v~iW~i~~ 454 (473)
|.|+||+...
T Consensus 276 ~~v~lw~~~~ 285 (297)
T 2pm7_B 276 NKVTLWKENL 285 (297)
T ss_dssp SCEEEEEECT
T ss_pred CcEEEEEECC
Confidence 9999999864
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.8e-37 Score=298.55 Aligned_cols=280 Identities=17% Similarity=0.232 Sum_probs=227.1
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
.+.+++++|++|+.||.|++||.. +....+.+|.+.|.+++|+|++++|++|+.||.|++||+.+++......
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----- 178 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI----- 178 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-----
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-----
Confidence 345679999999999999999965 3455567899999999999999999999999999999998876543322
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec---CCCceeE
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA---HDDAINS 282 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~~~~v~~ 282 (473)
+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.. +...+.+
T Consensus 179 ---------------------------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~ 231 (420)
T 3vl1_A 179 ---------------------------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS 231 (420)
T ss_dssp ---------------------------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEE
T ss_pred ---------------------------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccE
Confidence 4999999999999999999999999999999999999988875 3344444
Q ss_pred E---------------------EEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCC-EE
Q 012007 283 V---------------------VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA-VV 339 (473)
Q Consensus 283 l---------------------~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l 339 (473)
+ +|+|++ +|++++.||.|++||++.. .........|...|++++|+|++. +|
T Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l 306 (420)
T 3vl1_A 232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK-----EQTIQLPSKFTCSCNSLTVDGNNANYI 306 (420)
T ss_dssp EEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC-----CEEEEECCTTSSCEEEEEECSSCTTEE
T ss_pred EEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC-----ceeEEcccccCCCceeEEEeCCCCCEE
Confidence 4 456777 8999999999999999743 334444557889999999999998 99
Q ss_pred EEeCCCCcEEEEecCCcccccceeec-CcceEEEEE-ecCCEEEEEeCCCcEEEEecCCCCcee------EEEEecCCCC
Q 012007 340 YCGSSDGLVNFWECEKHLSHGGVLRG-HKMAVLCLA-AAGNLVFSGSADRNICLWRREESGAHS------CLAVLTGHTG 411 (473)
Q Consensus 340 ~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~~~~~h~~ 411 (473)
++++.||.|++||+++.......+.+ |...+.++. +++++|++++.|+.|++|++....... ....+.+|.+
T Consensus 307 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (420)
T 3vl1_A 307 YAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD 386 (420)
T ss_dssp EEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC
T ss_pred EEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc
Confidence 99999999999999987654455555 666676654 468899999999999999988743221 1234567889
Q ss_pred ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 412 PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 412 ~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.|.+++|+|++.. ++ .+++++.+|.+.+|++..
T Consensus 387 ~v~~~~~s~~~~~--------~g--~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 387 AVSQFCYVSDDES--------NG--EVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCCEEEEECCSSS--------SC--EEEEEETTTEEEEEESCC
T ss_pred ceEEEEEccCCCC--------cc--eEEEEcCCceEEEEeccC
Confidence 9999999999861 01 366667789999999875
No 41
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=282.90 Aligned_cols=285 Identities=21% Similarity=0.335 Sum_probs=240.1
Q ss_pred cceeeeeeecccEEEEEe-cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 114 GLIGSIVRKEGHIYSLAA-SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~-~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
.+...+.+|.+.|.++.+ ++++|++|+.||.|++||.. +....+..|...|.+++|+|++++|++|+.||.|++|++
T Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp EEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred HHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 567889999999999885 68899999999999999965 345667789999999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
......... ....+|...|.++.| ++++|++++.|+.|++|| .++.+
T Consensus 89 ~~~~~~~~~-----------------------------~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~ 135 (313)
T 3odt_A 89 FATSGEDPL-----------------------------YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLV 135 (313)
T ss_dssp TCCTTSCC------------------------------CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEE
T ss_pred eecCCCCcc-----------------------------cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEE
Confidence 765321100 111248999999999 578999999999999999 77888
Q ss_pred EEeecCCCceeEEEEcC-C-CEEEEEeCCCcEEEEeCcccCCCcceeeeeeecc-CCccEEEEEEccCCCEEEEeCCCCc
Q 012007 271 ESINAHDDAINSVVAGF-D-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK-HENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~-~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
..+..|...+.++.+.+ + ..+++++.||.|++||... ....+.. |...|.+++|+|++. +++++.||.
T Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~ 206 (313)
T 3odt_A 136 YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL 206 (313)
T ss_dssp EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSE
T ss_pred EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCe
Confidence 89999999999999877 4 4999999999999999431 2233334 889999999999988 889999999
Q ss_pred EEEEecCCcccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 348 VNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
|++||+++... ...+.+|...+.++.+. + .|++++.||.|++||+.+ .+++..+..|...|.+++|+|++.
T Consensus 207 i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~i~~~~~~~~~~-- 279 (313)
T 3odt_A 207 IKLVDMHTGDV-LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN---GSLKQVITLPAISIWSVDCMSNGD-- 279 (313)
T ss_dssp EEEEETTTCCE-EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTT---CCEEEEEECSSSCEEEEEECTTSC--
T ss_pred EEEEECCchhh-hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCC---CceeEEEeccCceEEEEEEccCCC--
Confidence 99999987543 45667899889888765 5 799999999999999998 567888889999999999999986
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
+++++.||.|++|++..+....
T Consensus 280 ------------~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 280 ------------IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp ------------EEEEETTSCEEEEESCGGGCCC
T ss_pred ------------EEEEeCCCcEEEEeCCCCceee
Confidence 5678999999999998775443
No 42
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.1e-37 Score=288.05 Aligned_cols=251 Identities=16% Similarity=0.268 Sum_probs=215.5
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+....+.+|.+.|.+++|+|++++|++|+.||.|++||+.+++......
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~------------------------------- 94 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP------------------------------- 94 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-------------------------------
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee-------------------------------
Confidence 3456788999999999999999999999999999999998876543332
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC----eeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcc
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC----KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRREL 307 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~----~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~ 307 (473)
.|...|.+++|+|++++|++|+.|+.|++||+.+. +....+.+|...|.++.|.+++.+++++.|+.|++||++.
T Consensus 95 -~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~ 173 (340)
T 1got_B 95 -LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173 (340)
T ss_dssp -CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred -cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCC
Confidence 38889999999999999999999999999999865 4567788999999999999999999999999999999963
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeC
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSA 385 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~ 385 (473)
+ .....+.+|...|.+++|+|++++|++|+.|+.|++||+++... ...+.+|...|.++. +++++|++|+.
T Consensus 174 ~------~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 246 (340)
T 1got_B 174 G------QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAFATGSD 246 (340)
T ss_dssp T------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred C------cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee-EEEEcCCcCCEEEEEEcCCCCEEEEEcC
Confidence 2 24566788999999999999999999999999999999987543 356778888887665 56999999999
Q ss_pred CCcEEEEecCCCCceeEEEEec--CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 386 DRNICLWRREESGAHSCLAVLT--GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
||+|++||++.. ..+..+. .+...|++++|+|++. +|++|+.||.|++||+.....
T Consensus 247 d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~g~-------------~l~~g~~d~~i~vwd~~~~~~ 304 (340)
T 1got_B 247 DATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGR-------------LLLAGYDDFNCNVWDALKADR 304 (340)
T ss_dssp TSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECTTSS-------------EEEEEETTSEEEEEETTTCCE
T ss_pred CCcEEEEECCCC---cEEEEEccCCcccceEEEEECCCCC-------------EEEEECCCCeEEEEEcccCcE
Confidence 999999999873 4444443 3445799999999998 899999999999999987654
No 43
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.2e-36 Score=295.13 Aligned_cols=280 Identities=20% Similarity=0.326 Sum_probs=225.4
Q ss_pred EEEec-CCEEEEeeCCCcEEEeeCCc--ccc--ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 128 SLAAS-GDLLYTGSDSKNIRVWKNLK--EFS--GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 128 ~~~~~-g~~l~tg~~dg~i~vwd~~~--~~~--~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.++|+ +++||+|. |++|+|||... ... .+.+|...|++|+|+|+|++|++|+.||.|++||+.+++......
T Consensus 110 ~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~-- 186 (420)
T 4gga_A 110 LVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-- 186 (420)
T ss_dssp CEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--
T ss_pred eEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe--
Confidence 45554 56888876 89999999763 233 345688899999999999999999999999999999886544332
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-CeeeEEeecCCCcee
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESINAHDDAIN 281 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~v~ 281 (473)
+|...+.++.++ +.+|++|+.|+.+++||... ...+..+.+|...+.
T Consensus 187 ------------------------------~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~ 234 (420)
T 4gga_A 187 ------------------------------SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 234 (420)
T ss_dssp ------------------------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred ------------------------------CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEeccccccee
Confidence 488899988875 58999999999999999876 455678899999999
Q ss_pred EEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEE--eCCCCcEEEEecCCcc
Q 012007 282 SVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYC--GSSDGLVNFWECEKHL 357 (473)
Q Consensus 282 ~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~--~~~dg~i~iwd~~~~~ 357 (473)
.+.+.+++ ++++++.|+.+++|+...... ..........|...|.+++|+|.+ .++++ |+.|+.|++||+.++.
T Consensus 235 ~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~--~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~ 312 (420)
T 4gga_A 235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 312 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCCSS--CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE
T ss_pred eeeecCCCCeeeeeeccccceEEeeccccc--cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc
Confidence 99999988 899999999999999975432 233445677899999999999965 45554 5689999999999876
Q ss_pred cccceeecCcceEEEEEecCCEEEEEe--CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCcc
Q 012007 358 SHGGVLRGHKMAVLCLAAAGNLVFSGS--ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQR 435 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~ 435 (473)
...............+.++++.+++++ .|+.|+|||+.+ .+++..+.+|.+.|++++|+|++.
T Consensus 313 ~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~---~~~v~~l~gH~~~V~~l~~spdg~------------ 377 (420)
T 4gga_A 313 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT---MAKVAELKGHTSRVLSLTMSPDGA------------ 377 (420)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSS------------
T ss_pred cceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC---CcEEEEEcCCCCCEEEEEEcCCCC------------
Confidence 554333333333345567788887765 799999999998 678899999999999999999998
Q ss_pred EEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 436 WTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 436 ~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+|+||+.||+|+|||+.+..+..+
T Consensus 378 -~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 378 -TVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp -CEEEEETTTEEEEECCSCSSCC--
T ss_pred -EEEEEecCCeEEEEECCCCCccch
Confidence 899999999999999987655433
No 44
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=291.77 Aligned_cols=289 Identities=16% Similarity=0.218 Sum_probs=231.0
Q ss_pred eeeeeeecccEEEEEec--CC-EEEEeeC---CCcEEEeeCCccc---cccccCcccEEEEEEeCC---CCEEEEEeCCC
Q 012007 116 IGSIVRKEGHIYSLAAS--GD-LLYTGSD---SKNIRVWKNLKEF---SGFKSNSGLVKAIIISGD---SNKIFTGHQDG 183 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~-~l~tg~~---dg~i~vwd~~~~~---~~~~~h~~~V~~l~~s~~---~~~l~s~~~dg 183 (473)
...+.+|.+.|.+++++ +. ++++|+. ||.|+|||..... ....+|...|.+++|+|+ +++|++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34567899999999876 53 5667766 9999999976322 223368999999999998 69999999999
Q ss_pred eEEEEeCCCCC-eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE------cCCCCEEEEEeCC
Q 012007 184 KIRIWKVSRKN-ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL------NAEQGLLYSGSWD 256 (473)
Q Consensus 184 ~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~------~~~~~~l~s~s~d 256 (473)
.|++||+.+++ ..... .+|...|.+++| ++++++|++++.|
T Consensus 91 ~i~iwd~~~~~~~~~~~--------------------------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d 138 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSV--------------------------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRD 138 (357)
T ss_dssp CEEEECTTSCSSCSEEE--------------------------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred eEEEEeCCCCCccEEEE--------------------------------EecccceEEEeeccccccCCCccEEEEEeCC
Confidence 99999998876 22211 148999999955 6789999999999
Q ss_pred CCEEEEEcCCCe-eeEEeecCCC----ceeEEE----EcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCcc
Q 012007 257 KTLKVWRISDCK-CLESINAHDD----AINSVV----AGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA 326 (473)
Q Consensus 257 g~v~vwd~~~~~-~~~~~~~~~~----~v~~l~----~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
+.|++||+++++ .+..+..|.. .+.++. +++++ ++++++.||.|++||++... . .....|...
T Consensus 139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~--~~~~~~~~~ 211 (357)
T 3i2n_A 139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-----L--RWETNIKNG 211 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-----E--EEEEECSSC
T ss_pred CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-----e--eeecCCCCc
Confidence 999999999887 6777766554 788888 56666 89999999999999997432 1 334678899
Q ss_pred EEEEEEcc---CCCEEEEeCCCCcEEEEecCCcccccce----eecCcceEEEEEe--cCC-EEEEEeCCCcEEEEecCC
Q 012007 327 VTALAVNQ---ESAVVYCGSSDGLVNFWECEKHLSHGGV----LRGHKMAVLCLAA--AGN-LVFSGSADRNICLWRREE 396 (473)
Q Consensus 327 v~~l~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~--~~~-~l~s~~~dg~i~iwd~~~ 396 (473)
|.+++|+| ++.+|++++.||.|++||+++....... ..+|...+.++.+ ++. +|++|+.||.|++||+..
T Consensus 212 v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 99999999 9999999999999999999875443222 2378888877665 466 899999999999999986
Q ss_pred CCce----------------eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEE-EeeCCCcEEEEEcCCCC
Q 012007 397 SGAH----------------SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY-SGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 397 ~~~~----------------~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~-s~s~Dg~v~iW~i~~~~ 456 (473)
.... .++..+.+|...|++++|+|++. +|+ +++.||.|+||++.+..
T Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 292 PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR-------------GLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST-------------TEEEEEETTSEEEEEEECC--
T ss_pred CcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC-------------eEEEEecCCCcEEEEECCCcc
Confidence 4322 57888999999999999999998 566 89999999999998654
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-38 Score=302.83 Aligned_cols=283 Identities=14% Similarity=0.237 Sum_probs=231.2
Q ss_pred EEEecCC-EEEEe----------eCCCcEEEeeCCcc----ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 128 SLAASGD-LLYTG----------SDSKNIRVWKNLKE----FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 128 ~~~~~g~-~l~tg----------~~dg~i~vwd~~~~----~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
+++++|+ +|++| +.||.|+|||.... ......|...|.+++|+|++++|++|+.||.|++||+..
T Consensus 19 ~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~ 98 (416)
T 2pm9_A 19 AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNE 98 (416)
T ss_dssp CBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSS
T ss_pred eeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccc
Confidence 3445665 89999 89999999997632 223345889999999999999999999999999999987
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCe---
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCK--- 268 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~--- 268 (473)
....... .....+|...|.+++|+|+ +.+|++++.|+.|++||+.+++
T Consensus 99 ~~~~~~~----------------------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 99 ANNAINS----------------------------MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp TTSCCCE----------------------------EEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred ccccccc----------------------------hhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 2110000 0111249999999999998 8999999999999999999876
Q ss_pred ---eeEE---eecCCCceeEEEEcCC-C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccC------CccEEEEEEcc
Q 012007 269 ---CLES---INAHDDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH------ENAVTALAVNQ 334 (473)
Q Consensus 269 ---~~~~---~~~~~~~v~~l~~~~~-~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------~~~v~~l~~~~ 334 (473)
.... +..|...|.+++|+++ + ++++++.||.|++||++... ....+..+ ...|.+++|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK------EVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE------EEEEECCCCCSSCCCCCEEEEEECS
T ss_pred ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC------cceEEeccccccccCCceEEEEECC
Confidence 3333 3678999999999998 3 89999999999999997432 22333333 78999999999
Q ss_pred CC-CEEEEeCCCC---cEEEEecCCcccccceee-cCcceEEEEEe---cCCEEEEEeCCCcEEEEecCCCCceeEEEEe
Q 012007 335 ES-AVVYCGSSDG---LVNFWECEKHLSHGGVLR-GHKMAVLCLAA---AGNLVFSGSADRNICLWRREESGAHSCLAVL 406 (473)
Q Consensus 335 ~~-~~l~~~~~dg---~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 406 (473)
++ .+|++++.|+ .|++||+++.......+. +|...+.++.+ ++++|++++.||.|++||+.+ .+++..+
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~---~~~~~~~ 301 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES---AEQLSQF 301 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS---CCEEEEE
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC---Cccceee
Confidence 97 6899999998 999999998655556676 89888887775 689999999999999999988 5778888
Q ss_pred cCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 407 ~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
.+|...|++++|+|++.. +|++++.||.|++|++.......
T Consensus 302 ~~~~~~v~~~~~s~~~~~------------~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 302 PARGNWCFKTKFAPEAPD------------LFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp ECSSSCCCCEEECTTCTT------------EEEECCSSSEEEEEESCCCCCSS
T ss_pred cCCCCceEEEEECCCCCC------------EEEEEecCCcEEEEEccCCCCCc
Confidence 999999999999999832 89999999999999998876443
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-38 Score=305.49 Aligned_cols=287 Identities=14% Similarity=0.165 Sum_probs=237.6
Q ss_pred eecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc------cccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCC
Q 012007 121 RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 121 ~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~------~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~ 191 (473)
.|.+.|.++++ ++++|++|+.||.|++||... .+..+.+|.+.|.+++|+|+ +++|++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 57888988886 588999999999999999764 56678889999999999998 8999999999999999998
Q ss_pred CCCe------eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEc
Q 012007 192 RKNA------SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 192 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~ 264 (473)
+.+. ..... ....|...|.+++|+|+ +.+|++++.|+.|++||+
T Consensus 145 ~~~~~~~~~~~~~~~-----------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 195 (416)
T 2pm9_A 145 KCTESPSNYTPLTPG-----------------------------QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDL 195 (416)
T ss_dssp TTSSCTTTCCCBCCC-----------------------------CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEET
T ss_pred CCccccccccccccc-----------------------------cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEEC
Confidence 8751 11110 01148899999999998 789999999999999999
Q ss_pred CCCeeeEEeecC------CCceeEEEEcCCC--EEEEEeCCC---cEEEEeCcccCCCcceeeeeeec-cCCccEEEEEE
Q 012007 265 SDCKCLESINAH------DDAINSVVAGFDS--LVFTGSADG---TVKVWRRELQGKGTKHCLAQVLL-KHENAVTALAV 332 (473)
Q Consensus 265 ~~~~~~~~~~~~------~~~v~~l~~~~~~--~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~ 332 (473)
++++.+..+..+ ...|.+++|+|++ ++++++.|+ .|++||++... .....+. .|...|++++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~v~~~~~ 270 (416)
T 2pm9_A 196 KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-----TPLQTLNQGHQKGILSLDW 270 (416)
T ss_dssp TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-----SCSBCCCSCCSSCEEEEEE
T ss_pred CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-----CCcEEeecCccCceeEEEe
Confidence 999999988876 7899999999986 899999998 99999997432 2344555 79999999999
Q ss_pred cc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecC-CEEEEEeCCCcEEEEecCCCCceeEE-----
Q 012007 333 NQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAG-NLVFSGSADRNICLWRREESGAHSCL----- 403 (473)
Q Consensus 333 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~----- 403 (473)
+| ++.+|++++.||.|++||+++... ...+.+|...+.++. +++ .+|++++.|+.|++|++.........
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~ 349 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAEQ-LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETET 349 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCCE-EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCcc-ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccc
Confidence 99 899999999999999999987644 356677887776555 556 89999999999999999874321111
Q ss_pred ---------------------------EEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 404 ---------------------------AVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 404 ---------------------------~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.....|..++.+++|+|+++ +|++++.||.|+||++...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-------------~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 350 KQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-------------LVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-------------EECBCTTSSCBCCBCCCCC
T ss_pred cccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe-------------EEEEeCCCCeEEEEEeccC
Confidence 00112677889999999998 8999999999999998764
No 47
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-38 Score=300.63 Aligned_cols=292 Identities=15% Similarity=0.129 Sum_probs=218.8
Q ss_pred eeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 120 VRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 120 ~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
..|.+.|.++++ +|++||+|+.||.|+|||.. +.+..+.+|.+.|.+++|+|++++|++|+.||.|++||+.++
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 335566766665 58999999999999999865 456788899999999999999999999999999999999876
Q ss_pred C-eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe---e
Q 012007 194 N-ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK---C 269 (473)
Q Consensus 194 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~---~ 269 (473)
. ..... ...+|...|.+++|+|++++|++|+.|+.|++||+++++ .
T Consensus 88 ~~~~~~~------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 88 GTWKQTL------------------------------VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp -CCCCEE------------------------------ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC
T ss_pred Cceeeee------------------------------EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee
Confidence 5 11111 112489999999999999999999999999999999887 4
Q ss_pred eEEeec-CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC------------cceeeeeeeccCCccEEEEEEccC
Q 012007 270 LESINA-HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG------------TKHCLAQVLLKHENAVTALAVNQE 335 (473)
Q Consensus 270 ~~~~~~-~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~------------~~~~~~~~~~~~~~~v~~l~~~~~ 335 (473)
...+.. |...|.+++|+|++ +|++++.|+.|++||++..... ........+ .|...|.+++|+|+
T Consensus 138 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~ 216 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS 216 (377)
T ss_dssp CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT
T ss_pred eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC
Confidence 677777 99999999999987 8999999999999998632211 112333444 89999999999999
Q ss_pred CCEEEEeCCCCcEEEEecCCcccc---cceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCc-----------
Q 012007 336 SAVVYCGSSDGLVNFWECEKHLSH---GGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGA----------- 399 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~----------- 399 (473)
+++|++++.||.|++||+++.... ...+.+|...+.++ ++++++|++|+.|+.+ +|+....+.
T Consensus 217 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 295 (377)
T 3dwl_C 217 GNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTS 295 (377)
T ss_dssp SSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCC
T ss_pred CCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccc
Confidence 999999999999999999886541 45677888877655 5679999998866655 776652110
Q ss_pred ----------------e---------eEEE-------------EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 400 ----------------H---------SCLA-------------VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 400 ----------------~---------~~~~-------------~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
. ..+. ....|.+.|+++++.+... .....|+||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~---------~~~~~~~s~ 366 (377)
T 3dwl_C 296 KTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP---------GNITAFTSS 366 (377)
T ss_dssp CCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET---------TEEEEEEEE
T ss_pred ccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC---------CceEEEEee
Confidence 0 0000 1123999999999877643 111259999
Q ss_pred eCCCcEEEEEc
Q 012007 442 SLDKSVKVWRV 452 (473)
Q Consensus 442 s~Dg~v~iW~i 452 (473)
|.||.|+|||+
T Consensus 367 g~Dg~i~iWdl 377 (377)
T 3dwl_C 367 GTDGRVVLWTL 377 (377)
T ss_dssp ETTSEEEEECC
T ss_pred cCCCcEEEecC
Confidence 99999999986
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-36 Score=292.75 Aligned_cols=280 Identities=17% Similarity=0.254 Sum_probs=234.3
Q ss_pred eeecccEEEEEec--CC-EEEEeeCCCcEEEeeC----Cccc--------ccccc----------CcccEEEEEEeCCCC
Q 012007 120 VRKEGHIYSLAAS--GD-LLYTGSDSKNIRVWKN----LKEF--------SGFKS----------NSGLVKAIIISGDSN 174 (473)
Q Consensus 120 ~~h~~~V~~~~~~--g~-~l~tg~~dg~i~vwd~----~~~~--------~~~~~----------h~~~V~~l~~s~~~~ 174 (473)
..|.+.|.+++++ |+ +||+|+.||.|++|++ .... ..+.. |.+.|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 3455888887765 77 9999999999999998 4222 22222 678999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe
Q 012007 175 KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS 254 (473)
Q Consensus 175 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s 254 (473)
+|++|+.||.|++||. ++...... .+|...|.+++|+|++++|++++
T Consensus 122 ~l~~~~~dg~i~i~~~-~~~~~~~~--------------------------------~~~~~~v~~~~~~~~~~~l~~~~ 168 (425)
T 1r5m_A 122 SIVTGVENGELRLWNK-TGALLNVL--------------------------------NFHRAPIVSVKWNKDGTHIISMD 168 (425)
T ss_dssp EEEEEETTSCEEEEET-TSCEEEEE--------------------------------CCCCSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEeCCCeEEEEeC-CCCeeeec--------------------------------cCCCccEEEEEECCCCCEEEEEe
Confidence 9999999999999993 33322211 13889999999999999999999
Q ss_pred CCCCEEEEEcCCCeeeEEeecCCCc---------------eeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 255 WDKTLKVWRISDCKCLESINAHDDA---------------INSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~~~~~~~---------------v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
.|+.|++||+.+++.+..+..+... +.++.|++++.+++++.||.|++||++.. .....
T Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~------~~~~~ 242 (425)
T 1r5m_A 169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK------TPTGK 242 (425)
T ss_dssp TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS------SCSEE
T ss_pred cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC------ceeee
Confidence 9999999999999999999888776 99999999999999999999999999743 23455
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCC
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
+..|...|.+++|+|++++|++++.||.|++||+++... ...+.+|...+.++.+ ++ +|++++.|+.|++||+.+
T Consensus 243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~- 319 (425)
T 1r5m_A 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ- 319 (425)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC-SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc-ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-
Confidence 668999999999999999999999999999999987543 3556678888877765 46 999999999999999988
Q ss_pred CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 398 GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 398 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
..++..+..|...|.+++|+|++. +|++++.||.|++|++....
T Consensus 320 --~~~~~~~~~~~~~i~~~~~s~~~~-------------~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 320 --NTLLALSIVDGVPIFAGRISQDGQ-------------KYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp --TEEEEEEECTTCCEEEEEECTTSS-------------EEEEEETTSCEEEEECHHHH
T ss_pred --CcEeEecccCCccEEEEEEcCCCC-------------EEEEEECCCeEEEEECCCCc
Confidence 577888889999999999999998 89999999999999998765
No 49
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.8e-36 Score=279.74 Aligned_cols=257 Identities=19% Similarity=0.225 Sum_probs=206.0
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCC--CCEEEEEeCCCeEEE
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGD--SNKIFTGHQDGKIRI 187 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~v 187 (473)
+..+.+|.+.|.+++++ |++||+|+.|++|+|||.. +.+..+.+|.+.|.+++|+++ +++|++|+.||+|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 45678999999888764 8999999999999999964 456788999999999999864 889999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC--CCEEEEEeCCCCEEEEEcC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd~~ 265 (473)
||+.++....... ..+|...|.+++|+|+ +.+|++|+.|++|++||++
T Consensus 82 Wd~~~~~~~~~~~------------------------------~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~ 131 (297)
T 2pm7_B 82 WKEENGRWSQIAV------------------------------HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131 (297)
T ss_dssp EEBSSSCBCCCEE------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred EEcCCCceEEEEE------------------------------eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence 9998764211111 1138899999999997 8899999999999999998
Q ss_pred CCe--eeEEeecCCCceeEEEEcCC--------------CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEE
Q 012007 266 DCK--CLESINAHDDAINSVVAGFD--------------SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 266 ~~~--~~~~~~~~~~~v~~l~~~~~--------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (473)
++. ....+.+|...|.++.|+|+ .+|++|+.|+.|++||++... ........+.+|...|.+
T Consensus 132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~--~~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--QTYVLESTLEGHSDWVRD 209 (297)
T ss_dssp SSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT--TEEEEEEEECCCSSCEEE
T ss_pred CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC--ceEEEEEEecCCCCceEE
Confidence 763 24567889999999999986 389999999999999987432 122345567899999999
Q ss_pred EEEccCC---CEEEEeCCCCcEEEEecCCcccc--ccee--ecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCce
Q 012007 330 LAVNQES---AVVYCGSSDGLVNFWECEKHLSH--GGVL--RGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAH 400 (473)
Q Consensus 330 l~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~--~~~~--~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~ 400 (473)
++|+|++ .+|++++.|+.|++||++..... ...+ ..|...+.++ ++++++|++++.|+.|+||+....+.+
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w 289 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcE
Confidence 9999984 89999999999999998763211 1122 4566677655 567999999999999999998754444
Q ss_pred eEEE
Q 012007 401 SCLA 404 (473)
Q Consensus 401 ~~~~ 404 (473)
.++.
T Consensus 290 ~~~~ 293 (297)
T 2pm7_B 290 EPAG 293 (297)
T ss_dssp EEC-
T ss_pred Eecc
Confidence 4443
No 50
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.1e-36 Score=292.49 Aligned_cols=280 Identities=21% Similarity=0.435 Sum_probs=242.3
Q ss_pred cceeeeeeecccEEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 114 GLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
..+..+.+|.+.|.++.+++++|++|+.||+|++||.. +.+..+.+|...|.+++|+ +++|++|+.||.|++||+.
T Consensus 150 ~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~ 227 (445)
T 2ovr_B 150 KCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE 227 (445)
T ss_dssp CEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS
T ss_pred cEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC
Confidence 45677889999999999999999999999999999965 5567788999999999996 4589999999999999998
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
+++...... +|...|.+++| ++++|++|+.||.|++||+++++++.
T Consensus 228 ~~~~~~~~~--------------------------------~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 228 TGQCLHVLM--------------------------------GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 273 (445)
T ss_dssp SCCEEEEEE--------------------------------CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred CCcEEEEEc--------------------------------CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 876543322 48899999999 77899999999999999999999999
Q ss_pred EeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 272 SINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
.+..|...|.++.+ ....+++++.||.|++||++... ....+..|...+.++.++ +++|++++.||.|++|
T Consensus 274 ~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 274 TLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGN------CIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIW 344 (445)
T ss_dssp EECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCC------EEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred EecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCC------EEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEE
Confidence 99999999999999 44599999999999999997432 345677889999988875 6699999999999999
Q ss_pred ecCCcccccceeec---CcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe-----cCCCCceeEEEEecCCC
Q 012007 352 ECEKHLSHGGVLRG---HKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL-----TGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 352 d~~~~~~~~~~~~~---~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~h~~~V~~l~~~~~~~ 423 (473)
|++++... ..+.+ |...+.++++++++|++|+.||.|++||+.++ +.+..+ .+|.+.|++++|+|++.
T Consensus 345 d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 345 DIKTGQCL-QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG---EFIRNLVTLESGGSGGVVWRIRASNTKL 420 (445)
T ss_dssp ETTTCCEE-EEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC---CEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred ECCCCcEE-EEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCC---ceeeeeeccccCCCCceEEEEEecCCEE
Confidence 99876543 34443 88899999999999999999999999999984 445554 47888999999999988
Q ss_pred CCcccccCCCccEEEEEeeCCCc----EEEEEcCCC
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKS----VKVWRVSEH 455 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~----v~iW~i~~~ 455 (473)
++++|+.||+ |.|||+...
T Consensus 421 -------------~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 421 -------------VCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp -------------EEEEECSSSSSCCEEEEEECCCC
T ss_pred -------------EEEEcccCCCCccEEEEEECCCC
Confidence 8999999998 999999865
No 51
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-36 Score=282.43 Aligned_cols=257 Identities=22% Similarity=0.298 Sum_probs=205.9
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
.+..+.+|.+.|.+++|+++ +|++|+.|+.|++||+..+......... ..
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~----------------------------~~ 55 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD----------------------------ET 55 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC----------------------------TT
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe----------------------------cC
Confidence 45678899999999999988 9999999999999999865322111110 00
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-------CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEe
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-------CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWR 304 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-------~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd 304 (473)
+|...|.+++|+|++++|++|+.|++|++||+.. .+++..+.+|...|.+++|+|++ +|++|+.|+.|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 2889999999999999999999999999999853 45677889999999999999998 899999999999999
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc-cccceeecCcceEEEEEec----CCE
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL-SHGGVLRGHKMAVLCLAAA----GNL 379 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~----~~~ 379 (473)
++... ........+.+|...|.+++|+|++.+|++++.|+.|++||..... .....+.+|...|.++.++ +.+
T Consensus 136 ~~~~~--~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 136 TDESG--EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp CCTTC--CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred ccCCC--CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE
Confidence 95322 1223456678899999999999999999999999999999987542 3445778999999887764 568
Q ss_pred EEEEeCCCcEEEEecCCCC-----ceeEEEEecC-CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 380 VFSGSADRNICLWRREESG-----AHSCLAVLTG-HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
|++|+.|++|++||+.... ...+...+.+ |...|.+++|++++ +|++++.||.|+||++.
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--------------~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--------------LIASVGADGVLAVYEEV 279 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--------------CEEEEETTSCEEEEEEE
T ss_pred EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--------------EEEEEeCCCEEEEEEcC
Confidence 9999999999999987521 1245556655 99999999999765 59999999999999987
Q ss_pred CC
Q 012007 454 EH 455 (473)
Q Consensus 454 ~~ 455 (473)
.+
T Consensus 280 ~~ 281 (330)
T 2hes_X 280 DG 281 (330)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 52
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=275.68 Aligned_cols=276 Identities=20% Similarity=0.319 Sum_probs=221.4
Q ss_pred EEec-CCEEEEeeCCCcEEEeeCC--ccccc--cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecc
Q 012007 129 LAAS-GDLLYTGSDSKNIRVWKNL--KEFSG--FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 129 ~~~~-g~~l~tg~~dg~i~vwd~~--~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 203 (473)
++|+ +++||+|. |++|+|||.. +.+.. +.+|...|.+++|+|++++|++|+.||.|++||+.+++......
T Consensus 31 l~WS~~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~--- 106 (318)
T 4ggc_A 31 VDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--- 106 (318)
T ss_dssp EEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---
T ss_pred EEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec---
Confidence 4444 34777765 8999999975 33343 45688899999999999999999999999999999886544332
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-eeeEEeecCCCceeE
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINS 282 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~v~~ 282 (473)
+|...+.++.+ ++..+++++.++.+++|+.... ..+..+.+|...+..
T Consensus 107 -----------------------------~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (318)
T 4ggc_A 107 -----------------------------SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 155 (318)
T ss_dssp -----------------------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred -----------------------------CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEE
Confidence 37777776655 5689999999999999999765 556778899999999
Q ss_pred EEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE---EEEeCCCCcEEEEecCCccc
Q 012007 283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV---VYCGSSDGLVNFWECEKHLS 358 (473)
Q Consensus 283 l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~---l~~~~~dg~i~iwd~~~~~~ 358 (473)
+.+.+++ ++++++.||.|++||++.+.. ..........+...|.+++++|++.. +++++.++.|++||.+....
T Consensus 156 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~ 233 (318)
T 4ggc_A 156 LRWAPDGRHLASGGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233 (318)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESSCBTT--BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE
T ss_pred EEEcCCCCEEEEEecCcceeEEECCCCcc--cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc
Confidence 9999887 899999999999999985442 23334556678889999999997643 34678899999999987655
Q ss_pred ccceeecCcceEEEEEecCCEEEEEe--CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccE
Q 012007 359 HGGVLRGHKMAVLCLAAAGNLVFSGS--ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRW 436 (473)
Q Consensus 359 ~~~~~~~~~~~v~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~ 436 (473)
.............++.+++..+++++ .|+.|++||+.+ .+++..+.+|.+.|++++|+|++.
T Consensus 234 ~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~---~~~~~~l~gH~~~V~~l~~spdg~------------- 297 (318)
T 4ggc_A 234 LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT---MAKVAELKGHTSRVLSLTMSPDGA------------- 297 (318)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSS-------------
T ss_pred cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC---CcEEEEEcCCCCCEEEEEEcCCCC-------------
Confidence 54443334444566667788777654 799999999998 578899999999999999999998
Q ss_pred EEEEeeCCCcEEEEEcCCCCC
Q 012007 437 TVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 437 ~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+|+|||.||+|+|||+.+..|
T Consensus 298 ~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp CEEEEETTTEEEEECCSCCCC
T ss_pred EEEEEecCCeEEEEECCCCCC
Confidence 899999999999999987654
No 53
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.9e-36 Score=283.79 Aligned_cols=290 Identities=13% Similarity=0.107 Sum_probs=215.2
Q ss_pred ccEEEEEe--cCCEEEEeeCCC-------cEEEeeCCcc------------ccccccCcccEEEEEEeCCCCEEEEEe--
Q 012007 124 GHIYSLAA--SGDLLYTGSDSK-------NIRVWKNLKE------------FSGFKSNSGLVKAIIISGDSNKIFTGH-- 180 (473)
Q Consensus 124 ~~V~~~~~--~g~~l~tg~~dg-------~i~vwd~~~~------------~~~~~~h~~~V~~l~~s~~~~~l~s~~-- 180 (473)
-+|++++| +|++|++||.|. .|++|++... ...+..|...|.+++++. +.+++|.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~--~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK--GIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET--TEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC--CEEEEEECC
Confidence 35777665 688999998644 4999985421 123567888899988764 4777664
Q ss_pred ---------CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 181 ---------QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 181 ---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
.|+.+++|++............ ........+...+.+++|+|||++|+
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~v~fSpDg~~la 149 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTS-----------------------VDFDASTNADDYTKLVYISREGTVAA 149 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEE-----------------------ECSSCCCCTTCCEEEEEECTTSSCEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeee-----------------------eceeecCCcccCEEEEEEcCCCCEEE
Confidence 4667888887655432211100 00001112556789999999999987
Q ss_pred EEe--CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE
Q 012007 252 SGS--WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT 328 (473)
Q Consensus 252 s~s--~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 328 (473)
+++ .|++|+|||+++++++..+. |...|.+++|+|++ ++++++ ++.+++|+...+ ..........|...|.
T Consensus 150 ~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~----~~~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTG----SCIARKTDFDKNWSLS 223 (365)
T ss_dssp EEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTC----CEEEEECCCCTTEEEE
T ss_pred EEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccC----cceeeeecCCCCCCEE
Confidence 654 78999999999999998886 77889999999998 666666 555666665432 2223345567889999
Q ss_pred EEEEccCCCEEEEeCCCC----cEEEEecCCccc---ccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCc
Q 012007 329 ALAVNQESAVVYCGSSDG----LVNFWECEKHLS---HGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGA 399 (473)
Q Consensus 329 ~l~~~~~~~~l~~~~~dg----~i~iwd~~~~~~---~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~ 399 (473)
+++|+|++.++++++.|+ .+++|++..... ....+.+|...|.++ +|+|++||+|+.|++|+|||+.+
T Consensus 224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~--- 300 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD--- 300 (365)
T ss_dssp EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT---
T ss_pred EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC---
Confidence 999999999999998887 578888765332 123566788888665 46799999999999999999998
Q ss_pred eeEEEE-ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 400 HSCLAV-LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 400 ~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
.+++.. +.+|...|++|+|+||++ +|+|||.|++|+||++........
T Consensus 301 ~~~~~~~~~gH~~~V~~v~fSpdg~-------------~laS~S~D~tvrvw~ip~~~~~~~ 349 (365)
T 4h5i_A 301 LSMSKIFKQAHSFAITEVTISPDST-------------YVASVSAANTIHIIKLPLNYANYT 349 (365)
T ss_dssp TEEEEEETTSSSSCEEEEEECTTSC-------------EEEEEETTSEEEEEECCTTTTC--
T ss_pred CcEEEEecCcccCCEEEEEECCCCC-------------EEEEEeCCCeEEEEEcCCCCcCcc
Confidence 567766 579999999999999999 899999999999999976654433
No 54
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-36 Score=291.79 Aligned_cols=293 Identities=12% Similarity=0.142 Sum_probs=237.3
Q ss_pred ecccEEEEEec--CCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 122 KEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 122 h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
|.+.|.+++++ +++|++|+.||.|++||.. +.+..+..|...|.+++|+|++++|++++.||.|++||+.+++....
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 67889988875 8899999999999999954 45667888999999999999999999999999999999988765544
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCC
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 278 (473)
.......... ............+.+++|++++ .+++++.|+.|++||+.+++.+..+..|..
T Consensus 187 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 248 (425)
T 1r5m_A 187 FELKETGGSS-----------------INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG 248 (425)
T ss_dssp ECCC--------------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSS
T ss_pred eeccccCccc-----------------eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC
Confidence 3321110000 0000001123338899999874 688999999999999999999999999999
Q ss_pred ceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc
Q 012007 279 AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357 (473)
Q Consensus 279 ~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 357 (473)
.|.+++|++++ +|++++.||.|++||++... ....+..|...|.+++|+|++ ++++++.|+.|++||+++..
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGN------SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEECSSSBS------CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCc------cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence 99999999988 89999999999999987432 345566789999999999999 99999999999999998754
Q ss_pred cccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCC-----------------ceeEEEEecCCCC--ceeEE
Q 012007 358 SHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESG-----------------AHSCLAVLTGHTG--PVKCL 416 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~h~~--~V~~l 416 (473)
. ...+..|...+.++. +++++|++++.||.|++||+.+.. ...++..+.+|.. .|+++
T Consensus 322 ~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 400 (425)
T 1r5m_A 322 L-LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDL 400 (425)
T ss_dssp E-EEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEE
T ss_pred E-eEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEE
Confidence 3 355667777776665 569999999999999999998721 0117888999976 99999
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+|+|++. +|++++.||.|++|++.
T Consensus 401 ~~s~~~~-------------~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 401 SWNCAGN-------------KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECTTSS-------------EEEEEESSSCCEEEECC
T ss_pred EccCCCc-------------eEEEEecCceEEEEeec
Confidence 9999998 89999999999999985
No 55
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6e-36 Score=278.31 Aligned_cols=250 Identities=23% Similarity=0.406 Sum_probs=212.7
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
...+.+|.+.|.+++|+|++++|++|+.||.|++|++.+++...... +
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------------------------------~ 63 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------------------------------G 63 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------------------------------C
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc--------------------------------c
Confidence 44678899999999999999999999999999999998776433221 4
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
|...|.+++|+|++++|++|+.|+.|++||+++++++..+..|...|.++.|+|++ +|++|+.|+.|++||++..
T Consensus 64 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---- 139 (312)
T 4ery_A 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 139 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC----
T ss_pred CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----
Confidence 88999999999999999999999999999999999999999999999999999987 8999999999999999743
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE--EEEecCCEEEEEeCCCcEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL--CLAAAGNLVFSGSADRNIC 390 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~~~dg~i~ 390 (473)
.....+..|...|.+++|+|++.+|++++.||.|++||+++..........+...+. ++++++++|++++.|+.|+
T Consensus 140 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 217 (312)
T 4ery_A 140 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217 (312)
T ss_dssp --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred --EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 234567789999999999999999999999999999999876655444445555554 4556799999999999999
Q ss_pred EEecCCCCceeEEEEecCCCCceeE--EEEe-cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKC--LAVE-EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~--l~~~-~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+||+.+ .+++..+.+|...+.+ ..+. +++. +|++|+.||.|++||+..++.
T Consensus 218 iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~l~sg~~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 218 LWDYSK---GKCLKTYTGHKNEKYCIFANFSVTGGK-------------WIVSGSEDNLVYIWNLQTKEI 271 (312)
T ss_dssp EEETTT---TEEEEEECSSCCSSSCCCEEEECSSSC-------------EEEECCTTSCEEEEETTTCCE
T ss_pred EEECCC---CcEEEEEEecCCceEEEEEEEEeCCCc-------------EEEEECCCCEEEEEECCCchh
Confidence 999998 5778888888765433 3344 4455 899999999999999987754
No 56
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.3e-36 Score=287.97 Aligned_cols=271 Identities=16% Similarity=0.199 Sum_probs=197.1
Q ss_pred EEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeC------CCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 135 LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQ------DGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
+++.++.+.....|++.. .....|...|.+++|+|||++|++|+. |+.|++|+..++......
T Consensus 18 ~~~~~~g~~~~~~w~~p~--~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~--------- 86 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPV--TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL--------- 86 (357)
T ss_dssp ------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG---------
T ss_pred eEEecCCCccccccCCCC--CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE---------
Confidence 344445567789998642 234569999999999999999999997 778999988765422111
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE----EeecCCCceeEEE
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE----SINAHDDAINSVV 284 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~----~~~~~~~~v~~l~ 284 (473)
.....+|...|.+++|+|++. +++++.||+|+|||+.+++.+. ...+|...|.+++
T Consensus 87 -------------------~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 87 -------------------CTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp -------------------CSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred -------------------ecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 112235889999999999875 5567889999999998877543 3347999999999
Q ss_pred EcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccccc-
Q 012007 285 AGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSHGG- 361 (473)
Q Consensus 285 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~- 361 (473)
|+|++ +|++|+.|+.|++||++. ......+..|...|++++|++++ .++++++.||.|++||++++.....
T Consensus 147 ~spdg~~l~sgs~dg~v~iwd~~~------~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~ 220 (357)
T 4g56_B 147 VFSDGTQAVSGGKDFSVKVWDLSQ------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI 220 (357)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTT------TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC
T ss_pred ECCCCCEEEEEeCCCeEEEEECCC------CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee
Confidence 99998 899999999999999863 23456678899999999999987 4788999999999999987654432
Q ss_pred eeecCcceEEEEEe--c-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEE
Q 012007 362 VLRGHKMAVLCLAA--A-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTV 438 (473)
Q Consensus 362 ~~~~~~~~v~~~~~--~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l 438 (473)
....|...+.++++ + +.+|++|+.|+.|++||+.+ .+++..+.+|...|++++|+|++.. +|
T Consensus 221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~---~~~~~~~~~~~~~v~~l~~sp~~~~------------~l 285 (357)
T 4g56_B 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN---PDSAQTSAVHSQNITGLAYSYHSSP------------FL 285 (357)
T ss_dssp CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC---GGGCEEECCCSSCEEEEEECSSSSC------------CE
T ss_pred eeccccccccchhhhhcccceEEEeecccceeEEECCC---CcEeEEEeccceeEEEEEEcCCCCC------------EE
Confidence 23456666777765 3 67899999999999999998 5677888999999999999998753 79
Q ss_pred EEeeCCCcEEEEEcCCCCC
Q 012007 439 YSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 439 ~s~s~Dg~v~iW~i~~~~~ 457 (473)
++|+.||+|+|||+..++.
T Consensus 286 asgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 286 ASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp EEEETTSCEEEECTTSCEE
T ss_pred EEEeCCCEEEEEECCCCcE
Confidence 9999999999999987653
No 57
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.1e-36 Score=291.34 Aligned_cols=274 Identities=14% Similarity=0.200 Sum_probs=222.3
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCc--cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
+++++|++|++|+.||.|++||... ....+..| ..+....|++++++|++|+.||.|++||+.++......
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------ 135 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID------ 135 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET------
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec------
Confidence 6888999999999999999999763 33344444 44555678999999999999999999999876542211
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEE
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA 285 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~ 285 (473)
.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|
T Consensus 136 --------------------------~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 189 (420)
T 3vl1_A 136 --------------------------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI 189 (420)
T ss_dssp --------------------------TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred --------------------------ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence 139999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeec---cCCccEE---------------------EEEEccCCCEEE
Q 012007 286 GFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLL---KHENAVT---------------------ALAVNQESAVVY 340 (473)
Q Consensus 286 ~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~v~---------------------~l~~~~~~~~l~ 340 (473)
+|++ +|++++.||.|++||++... ....+. .+...|. +++|+|++++|+
T Consensus 190 ~~~~~~l~s~~~d~~v~iwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 263 (420)
T 3vl1_A 190 IDRGRNVLSASLDGTIRLWECGTGT------TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI 263 (420)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTE------EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE
T ss_pred cCCCCEEEEEcCCCcEEEeECCCCc------eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE
Confidence 9987 89999999999999997432 122222 3344444 455578999999
Q ss_pred EeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCC-EEEEEeCCCcEEEEecCCCCceeEEEEecC-CCCceeEE
Q 012007 341 CGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGN-LVFSGSADRNICLWRREESGAHSCLAVLTG-HTGPVKCL 416 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~V~~l 416 (473)
+++.||.|++||+++..........|...+.++.+ ++. +|++|+.||.|++||+.++. .++..+.+ |...|.++
T Consensus 264 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~ 341 (420)
T 3vl1_A 264 AGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFLINEGTPINNV 341 (420)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEEESTTSCEEEE
T ss_pred EEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--CchhhhhccCCCCceEE
Confidence 99999999999999877666666678888877765 466 99999999999999998842 23445554 67788888
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.+. ++. +|++++.||.|++|++....
T Consensus 342 ~~~-~~~-------------~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 342 YFA-AGA-------------LFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp EEE-TTE-------------EEEEETTTEEEEEEEECCTT
T ss_pred EeC-CCC-------------EEEEecCCccEEEEeccCCC
Confidence 665 555 89999999999999998753
No 58
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.3e-36 Score=279.87 Aligned_cols=279 Identities=16% Similarity=0.249 Sum_probs=229.1
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCCc--cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccc
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSL 204 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 204 (473)
.+++++|++++++..++.+.+|.... ......+|.+.|.+++|+|++++|++++ ||.|++||+.++........
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~--- 90 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ--- 90 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE---
T ss_pred EEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeec---
Confidence 45567799999998888887776543 2333457999999999999999999998 99999999987653211110
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe--eeEEeecCCCceeE
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK--CLESINAHDDAINS 282 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~--~~~~~~~~~~~v~~ 282 (473)
....+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+
T Consensus 91 ------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 91 ------------------------LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA 146 (337)
T ss_dssp ------------------------EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEE
T ss_pred ------------------------ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEE
Confidence 0011388999999999999999999999999999999877 66778889999999
Q ss_pred EEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc
Q 012007 283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG 361 (473)
Q Consensus 283 l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 361 (473)
++|++++ ++++++.||.|++||++.. .....+..|...|.+++|+|++++|++++.||.|++||+++......
T Consensus 147 ~~~~~~~~~l~~~~~dg~v~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 220 (337)
T 1gxr_A 147 LAISPDSKVCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCC------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee
Confidence 9999987 8999999999999999732 34556677999999999999999999999999999999987655433
Q ss_pred eeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEE
Q 012007 362 VLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439 (473)
Q Consensus 362 ~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~ 439 (473)
. .+...+.++ ++++++|++++.|+.|++||+.+. . ...+..|...|.+++|+|++. +|+
T Consensus 221 ~--~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~---~-~~~~~~~~~~v~~~~~~~~~~-------------~l~ 281 (337)
T 1gxr_A 221 H--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP---D-KYQLHLHESCVLSLKFAYCGK-------------WFV 281 (337)
T ss_dssp E--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS---C-EEEECCCSSCEEEEEECTTSS-------------EEE
T ss_pred e--cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---C-eEEEcCCccceeEEEECCCCC-------------EEE
Confidence 2 345555554 567999999999999999999883 2 345678999999999999998 899
Q ss_pred EeeCCCcEEEEEcCCCCCC
Q 012007 440 SGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 440 s~s~Dg~v~iW~i~~~~~~ 458 (473)
+++.||.|++|++..++..
T Consensus 282 ~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 282 STGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEETTSEEEEEETTTCCEE
T ss_pred EecCCCcEEEEECCCCeEE
Confidence 9999999999999887654
No 59
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.5e-36 Score=282.81 Aligned_cols=262 Identities=19% Similarity=0.275 Sum_probs=203.4
Q ss_pred eeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc----cccccccCcccEEEEEEeC--CCCEEEEEeCCCeEEEE
Q 012007 117 GSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIISG--DSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~----~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vw 188 (473)
..+.+|.+.|.++++ +|++||+|+.|++|+|||+.. .+..+.+|.+.|.+++|++ ++++|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 356789999998886 489999999999999999652 3567889999999999986 48899999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC--CCEEEEEeCCCCEEEEEcCC
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd~~~ 266 (473)
|+.++....... ..+|...|.+++|+|+ +.+|++|+.|++|++||++.
T Consensus 87 d~~~~~~~~~~~------------------------------~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 87 REENGTWEKSHE------------------------------HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136 (316)
T ss_dssp CCSSSCCCEEEE------------------------------ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred ECCCCcceEEEE------------------------------ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence 998764222111 1148999999999997 78999999999999999987
Q ss_pred Ce---eeEEeecCCCceeEEEEcCC------------------CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc
Q 012007 267 CK---CLESINAHDDAINSVVAGFD------------------SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN 325 (473)
Q Consensus 267 ~~---~~~~~~~~~~~v~~l~~~~~------------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 325 (473)
+. ....+.+|...|.++.|+|+ .+|++|+.|+.|++||++... .......+.+|..
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~l~~h~~ 213 (316)
T 3bg1_A 137 EGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG---QWKEEQKLEAHSD 213 (316)
T ss_dssp SSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS---CEEEEECCBCCSS
T ss_pred CCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC---ccceeeecccCCC
Confidence 53 24556789999999999986 379999999999999986321 1234556788999
Q ss_pred cEEEEEEccCC----CEEEEeCCCCcEEEEecCCc---ccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCC
Q 012007 326 AVTALAVNQES----AVVYCGSSDGLVNFWECEKH---LSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 326 ~v~~l~~~~~~----~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.|.+++|+|++ .+|++++.|++|++||++.. ......+..|...+.+++ +++++|++|+.|+.|+||+...
T Consensus 214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999999986 89999999999999998762 122234567777776665 5699999999999999999875
Q ss_pred CCceeEEEEecCCCC
Q 012007 397 SGAHSCLAVLTGHTG 411 (473)
Q Consensus 397 ~~~~~~~~~~~~h~~ 411 (473)
.+...++..+....+
T Consensus 294 ~g~~~~~~~~~~~~~ 308 (316)
T 3bg1_A 294 DGQWVCISDVNKGQG 308 (316)
T ss_dssp TSCEEEEEECC----
T ss_pred CCcEEEeeeccCCCC
Confidence 445566666654443
No 60
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.9e-37 Score=284.32 Aligned_cols=253 Identities=18% Similarity=0.221 Sum_probs=202.3
Q ss_pred ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
.+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++...... .+.+|.
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~------------------------------~l~gH~ 57 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIA------------------------------DLRGHE 57 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEE------------------------------EEECCS
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEE------------------------------EEcCCC
Confidence 45689999999999999999999999999999999765422111 122599
Q ss_pred CCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCCC--eeeEEeecCCCceeEEEEcCC--C-EEEEEeCCCcEEEEeCccc
Q 012007 236 DAVSCLSLNA--EQGLLYSGSWDKTLKVWRISDC--KCLESINAHDDAINSVVAGFD--S-LVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 236 ~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~~--~~~~~~~~~~~~v~~l~~~~~--~-~l~s~~~dg~i~vwd~~~~ 308 (473)
..|.+++|++ ++++|++|+.|++|++||++++ +.+..+.+|...|.+++|+|+ + +|++|+.|+.|++||++..
T Consensus 58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 9999999986 4899999999999999999887 456778899999999999997 4 8999999999999998742
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccC-----------------CCEEEEeCCCCcEEEEecCCcc--cccceeecCcce
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQE-----------------SAVVYCGSSDGLVNFWECEKHL--SHGGVLRGHKMA 369 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~-----------------~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~ 369 (473)
. .......+..|...|.+++|+|+ +.+|++|+.|+.|++||++... .....+.+|...
T Consensus 138 ~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~ 214 (316)
T 3bg1_A 138 G---QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW 214 (316)
T ss_dssp S---CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC
T ss_pred C---CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc
Confidence 1 12234556789999999999997 4689999999999999997532 234567789999
Q ss_pred EEEEEec--C----CEEEEEeCCCcEEEEecCCCCc-eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 370 VLCLAAA--G----NLVFSGSADRNICLWRREESGA-HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 370 v~~~~~~--~----~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
|.++++. + .+|++|+.|++|++|++..... ......+..|...|.+++|+|++. +|++++
T Consensus 215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-------------~las~~ 281 (316)
T 3bg1_A 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-------------ILAVSG 281 (316)
T ss_dssp EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-------------CEEEEE
T ss_pred eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-------------EEEEEc
Confidence 9888764 3 7899999999999999876211 111223456889999999999998 899999
Q ss_pred CCCcEEEEEcCC
Q 012007 443 LDKSVKVWRVSE 454 (473)
Q Consensus 443 ~Dg~v~iW~i~~ 454 (473)
.||+|+||+...
T Consensus 282 ~D~~v~lw~~~~ 293 (316)
T 3bg1_A 282 GDNKVTLWKESV 293 (316)
T ss_dssp SSSCEEEEEECT
T ss_pred CCCeEEEEEECC
Confidence 999999999863
No 61
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-36 Score=290.83 Aligned_cols=265 Identities=17% Similarity=0.224 Sum_probs=215.9
Q ss_pred cEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceE
Q 012007 144 NIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYV 221 (473)
Q Consensus 144 ~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (473)
.+..|+.. .....+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++......
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--------------------- 105 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK--------------------- 105 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE---------------------
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe---------------------
Confidence 34455543 3456789999999999999999999999999999999998876443332
Q ss_pred EEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe-------eeEEeecCCCceeEEEEcCCC--EEE
Q 012007 222 EVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK-------CLESINAHDDAINSVVAGFDS--LVF 292 (473)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~-------~~~~~~~~~~~v~~l~~~~~~--~l~ 292 (473)
.|...|.+++|+|++++|++|+.|+.|++||+.+.. ....+.+|.+.|.++.|.|++ .|+
T Consensus 106 -----------~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~ 174 (380)
T 3iz6_a 106 -----------LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174 (380)
T ss_dssp -----------CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred -----------cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEE
Confidence 388999999999999999999999999999996532 345678899999999998864 799
Q ss_pred EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE
Q 012007 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL 371 (473)
Q Consensus 293 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 371 (473)
+|+.|+.|++||++.+.... ........+|...|.+++|++ ++.+|++|+.|+.|++||++........+.+|...|.
T Consensus 175 s~s~D~~i~~wd~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~ 253 (380)
T 3iz6_a 175 TGSGDQTCVLWDVTTGQRIS-IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN 253 (380)
T ss_dssp EECTTSCEEEECTTTCCEEE-EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC
T ss_pred EECCCCcEEEEEcCCCcEEE-EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE
Confidence 99999999999997543100 000112257899999999987 8899999999999999999865566677888998886
Q ss_pred EEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC-------CceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 372 CLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT-------GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 372 ~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-------~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
++. +++++|++|+.||+|++||+.+ ..++..+..+. ..|++++|+|++. +|++|+
T Consensus 254 ~v~~~p~~~~l~s~s~D~~i~lwd~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-------------~l~~g~ 317 (380)
T 3iz6_a 254 SVKFFPDGQRFGTGSDDGTCRLFDMRT---GHQLQVYNREPDRNDNELPIVTSVAFSISGR-------------LLFAGY 317 (380)
T ss_dssp EEEECTTSSEEEEECSSSCEEEEETTT---TEEEEEECCCCSSSCCSSCSCSEEEECSSSS-------------EEEEEC
T ss_pred EEEEecCCCeEEEEcCCCeEEEEECCC---CcEEEEecccccccccccCceEEEEECCCCC-------------EEEEEE
Confidence 665 5689999999999999999998 45566555432 3489999999998 899999
Q ss_pred CCCcEEEEEcCCCCC
Q 012007 443 LDKSVKVWRVSEHAP 457 (473)
Q Consensus 443 ~Dg~v~iW~i~~~~~ 457 (473)
.||.|++||+..++.
T Consensus 318 ~dg~i~vwd~~~~~~ 332 (380)
T 3iz6_a 318 SNGDCYVWDTLLAEM 332 (380)
T ss_dssp TTSCEEEEETTTCCE
T ss_pred CCCCEEEEECCCCce
Confidence 999999999876653
No 62
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.5e-35 Score=277.92 Aligned_cols=252 Identities=18% Similarity=0.238 Sum_probs=213.0
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+....+.+|.+.|.+++|+|++++|++|+.||+|++||..+.+......
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~------------------------------- 103 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT------------------------------- 103 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------------------------------
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe-------------------------------
Confidence 3455788999999999999999999999999999999998776443322
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC------eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEe
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC------KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWR 304 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~------~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd 304 (473)
.|...|.+++|+|++.+|++|+.|+.+++|++... .....+..|...|.++.|++++ .|++++.|+.|++||
T Consensus 104 -~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd 182 (354)
T 2pbi_B 104 -MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD 182 (354)
T ss_dssp -CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred -cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEe
Confidence 27788999999999999999999999999998643 3456677899999999999988 899999999999999
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEcc--CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEE
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQ--ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLV 380 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l 380 (473)
++.+ .....+.+|...|.+++|+| ++.+|++|+.||.|++||++++.. ...+.+|...|.++.+ ++.+|
T Consensus 183 ~~~~------~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~l 255 (354)
T 2pbi_B 183 VESG------QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGDAF 255 (354)
T ss_dssp TTTC------CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEE
T ss_pred CCCC------eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCeEEEEEeCCCCEE
Confidence 9743 24567788999999999987 568999999999999999988644 4567789888877765 68999
Q ss_pred EEEeCCCcEEEEecCCCCceeEEEEecC--CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 381 FSGSADRNICLWRREESGAHSCLAVLTG--HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 381 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
++|+.|++|++||++.. ..+..+.. +...+.+++|+|++. +|++|+.|+.|++||+..+...
T Consensus 256 ~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~~~s~~g~-------------~l~~g~~d~~i~vwd~~~~~~~ 319 (354)
T 2pbi_B 256 ASGSDDATCRLYDLRAD---REVAIYSKESIIFGASSVDFSLSGR-------------LLFAGYNDYTINVWDVLKGSRV 319 (354)
T ss_dssp EEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECTTSS-------------EEEEEETTSCEEEEETTTCSEE
T ss_pred EEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeEEEEeCCCC-------------EEEEEECCCcEEEEECCCCceE
Confidence 99999999999999873 44444443 345789999999998 8999999999999999876543
No 63
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1e-35 Score=280.14 Aligned_cols=277 Identities=14% Similarity=0.132 Sum_probs=233.0
Q ss_pred eeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc-c----ccccccCcccEEEEEEeCCCC-EEEEEeCCCeEEEEe
Q 012007 118 SIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK-E----FSGFKSNSGLVKAIIISGDSN-KIFTGHQDGKIRIWK 189 (473)
Q Consensus 118 ~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~-~----~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd 189 (473)
...+|.+.|.++++ ++++|++|+.||.|+||+... . ...+..|...|.+++|+|+++ +|++|+.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 34578999998876 588999999999999998642 2 455668999999999999999 999999999999999
Q ss_pred C-CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee--ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 190 V-SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR--HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 190 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
+ .++.... ..+ |...|.+++|+| +++|++++.|+.|++||+++
T Consensus 86 ~~~~~~~~~---------------------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~ 131 (342)
T 1yfq_A 86 LIGSPSFQA---------------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp SSSSSSEEE---------------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHH
T ss_pred eccCCceEe---------------------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccc
Confidence 9 7764311 114 889999999999 99999999999999999987
Q ss_pred ---------CeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcc-cCCCcceeeeeeeccCCccEEEEEEcc-C
Q 012007 267 ---------CKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRREL-QGKGTKHCLAQVLLKHENAVTALAVNQ-E 335 (473)
Q Consensus 267 ---------~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~-~ 335 (473)
++++..+. |...|.++++++++ +++++.|+.|++||++. ... ........|...|.+++|+| +
T Consensus 132 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~i~~i~~~~~~ 205 (342)
T 1yfq_A 132 YGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDD----NGTIEESGLKYQIRDVALLPKE 205 (342)
T ss_dssp HTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTC----CCEEEECSCSSCEEEEEECSGG
T ss_pred cccccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccc----cceeeecCCCCceeEEEECCCC
Confidence 77777776 88999999999888 99999999999999974 221 12334557888999999999 9
Q ss_pred CCEEEEeCCCCcEEEEecCCc-----ccccceeecCcc---------eEEEEE--ecCCEEEEEeCCCcEEEEecCCCCc
Q 012007 336 SAVVYCGSSDGLVNFWECEKH-----LSHGGVLRGHKM---------AVLCLA--AAGNLVFSGSADRNICLWRREESGA 399 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~---------~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~ 399 (473)
+++|++++.||.|++|+++.. ......+..|.. .+.+++ +++++|++|+.||.|++||+.+
T Consensus 206 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~--- 282 (342)
T 1yfq_A 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT--- 282 (342)
T ss_dssp GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT---
T ss_pred CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc---
Confidence 999999999999999999875 355566777744 676665 5689999999999999999998
Q ss_pred eeEEEEecCC-CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc-EEEEEc
Q 012007 400 HSCLAVLTGH-TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS-VKVWRV 452 (473)
Q Consensus 400 ~~~~~~~~~h-~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~-v~iW~i 452 (473)
.+++..+.+| ...|++++ |++. +|++++.||. .+.|..
T Consensus 283 ~~~~~~~~~~h~~~v~~~~--~~~~-------------~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 283 RKKIKNFAKFNEDSVVKIA--CSDN-------------ILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TEEEEECCCCSSSEEEEEE--ECSS-------------EEEEEEECTHHHHCSSS
T ss_pred HhHhhhhhcccCCCceEec--CCCC-------------eEEEEecCCcccccccc
Confidence 5778889998 99999999 8888 8999999998 655554
No 64
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.2e-35 Score=279.74 Aligned_cols=297 Identities=14% Similarity=0.124 Sum_probs=216.5
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCc------cccccccCcccEEEEEEeC--CCCEEEEEeCCCeE
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIISG--DSNKIFTGHQDGKI 185 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~------~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i 185 (473)
...+.+|.+.|.++.++ +++||+|+.||.|+|||... ....+.+|...|.+++|+| ++++|++|+.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 34567899999999874 88999999999999999652 3456678999999999999 69999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC--CCEEEEEeCCCCEEEEE
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd 263 (473)
++||+..+....... ..........|...|.+++|+|+ +.+|++++.||.|++||
T Consensus 84 ~vwd~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd 140 (351)
T 3f3f_A 84 KLWEEDPDQEECSGR-----------------------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD 140 (351)
T ss_dssp EEEEECTTSCTTSSC-----------------------SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred EEEecCCCccccccc-----------------------CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence 999998764211000 00000112248999999999999 99999999999999999
Q ss_pred cCCCeeeEEee-------------cCCCceeEEEEcCC---C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCcc
Q 012007 264 ISDCKCLESIN-------------AHDDAINSVVAGFD---S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA 326 (473)
Q Consensus 264 ~~~~~~~~~~~-------------~~~~~v~~l~~~~~---~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
+++++.+..+. .|...+.++.|+|+ + .+++++.|+.+.+|+.... .......+..|...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~h~~~ 216 (351)
T 3f3f_A 141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG----KLHVAAKLPGHKSL 216 (351)
T ss_dssp CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS----CEEEEEECCCCCSC
T ss_pred CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC----ceeeeeecCCCCcc
Confidence 98877554433 57889999999986 3 8999999999988876532 22345667789999
Q ss_pred EEEEEEccCC----CEEEEeCCCCcEEEEecCCcccccceeecCcceEE--EEEecCCEEEEE----eCCCcEEEEecCC
Q 012007 327 VTALAVNQES----AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL--CLAAAGNLVFSG----SADRNICLWRREE 396 (473)
Q Consensus 327 v~~l~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~----~~dg~i~iwd~~~ 396 (473)
|++++|+|++ .+|++++.||.|++||++........ ..+..... ........+..+ .....+.+|+...
T Consensus 217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (351)
T 3f3f_A 217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLAS-EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ 295 (351)
T ss_dssp EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------------------------CCSEE
T ss_pred eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcccc-CCcccceeccCCCcccccccccccccccceeeeeccccc
Confidence 9999999998 89999999999999999865333221 11111111 112222333333 3344455555444
Q ss_pred CCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 397 SGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 397 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
..++..+.+|...|++++|+|++. +|++|+.||.|+||++..+.
T Consensus 296 ---~~~~~~~~~h~~~v~~~~~s~~~~-------------~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 296 ---VELLSEHDDHNGEVWSVSWNLTGT-------------ILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ---EEEEEEECTTSSCEEEEEECSSSC-------------CEEEEETTSCEEEEEECTTS
T ss_pred ---ccEEEEEecccccEEEEEEcCCCC-------------EEEEecCCCcEEEEecCcCc
Confidence 678889999999999999999998 89999999999999998765
No 65
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=289.01 Aligned_cols=314 Identities=13% Similarity=0.213 Sum_probs=225.0
Q ss_pred eecccEEEEEec--CCEEEEeeCCCcEEEeeCCc-------------cccccccCc------------ccEEEEEEeCCC
Q 012007 121 RKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK-------------EFSGFKSNS------------GLVKAIIISGDS 173 (473)
Q Consensus 121 ~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~-------------~~~~~~~h~------------~~V~~l~~s~~~ 173 (473)
.|.+.|.+++++ |++||+|+.||.|+|||... ....+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 457888887764 88999999999999998652 255778898 889999999998
Q ss_pred --CEEEEEeCCCeEEEEeCCCCCeeeEEeeccc--------cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE
Q 012007 174 --NKIFTGHQDGKIRIWKVSRKNASVHKRVGSL--------PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243 (473)
Q Consensus 174 --~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 243 (473)
.+|++++.||.|++||+..+........... .....+......+...............+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 7999999999999999876443211000000 000000000000000111111111223469999999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCC-CeeeE-------EeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcc
Q 012007 244 NAEQGLLYSGSWDKTLKVWRISD-CKCLE-------SINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 244 ~~~~~~l~s~s~dg~v~vwd~~~-~~~~~-------~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
+|++++|++| .|+.|++||+++ ++.+. .+..|...|.+++|+|++ +|++|+.||.|++||++.... .
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~ 262 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL--C 262 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS--S
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc--c
Confidence 9999999999 799999999984 44444 256899999999999985 899999999999999985432 1
Q ss_pred eeeeeeeccCCc------------cEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE-----------
Q 012007 314 HCLAQVLLKHEN------------AVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV----------- 370 (473)
Q Consensus 314 ~~~~~~~~~~~~------------~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v----------- 370 (473)
......+..|.. .|.+++|+|++++|++++. +.|++||++........+.+|...+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 111344555554 8999999999999999998 9999999987444556666775321
Q ss_pred ------EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEE-----------------------------ecCCCCceeE
Q 012007 371 ------LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV-----------------------------LTGHTGPVKC 415 (473)
Q Consensus 371 ------~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------------------~~~h~~~V~~ 415 (473)
.++++++++|++|+.||.|++||+.++........ ...+...|.+
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 421 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH 421 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence 67888999999999999999999988432110000 1133457899
Q ss_pred EEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 416 LAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
++|+|++. +||+++.++ +++|.-
T Consensus 422 ~~~~p~~~-------------~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 422 TAWHPKEN-------------IIAVATTNN-LYIFQD 444 (447)
T ss_dssp EEECSSSS-------------EEEEECSSC-EEEEEC
T ss_pred EEECCCCC-------------EEEEEecce-eeeecc
Confidence 99999998 899888775 888864
No 66
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.1e-35 Score=272.24 Aligned_cols=249 Identities=22% Similarity=0.374 Sum_probs=208.7
Q ss_pred ccccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 154 FSGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
...+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.......... ...+.
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~---------------------------~~~~~ 62 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP---------------------------VRSFK 62 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEE---------------------------EEEEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccccc---------------------------ceEEe
Confidence 34678999999999999965 899999999999999986433211111 11223
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
+|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.++++++++ +|++|+.|+.|++||++.
T Consensus 63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~---- 138 (319)
T 3frx_A 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---- 138 (319)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS----
T ss_pred CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----
Confidence 599999999999999999999999999999999999999999999999999999987 899999999999999862
Q ss_pred cceeeeeeeccCCccEEEEEEccC------CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEE
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQE------SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSG 383 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~ 383 (473)
.....+.+|...|.+++|.|. +.+|++++.|+.|++||+++.. ....+.+|...+.+++ +++++|++|
T Consensus 139 ---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 139 ---QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp ---CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred ---CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 134567789999999999985 4589999999999999998753 3356678988887765 569999999
Q ss_pred eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 384 SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 384 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
+.||.|++||+.+ .+++..+..+ ..|.+++|+|++. +|++++.+ .+++|++...
T Consensus 215 ~~dg~i~iwd~~~---~~~~~~~~~~-~~v~~~~~sp~~~-------------~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 215 GKDGEIMLWNLAA---KKAMYTLSAQ-DEVFSLAFSPNRY-------------WLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp ETTCEEEEEETTT---TEEEEEEECC-SCEEEEEECSSSS-------------EEEEEETT-EEEEEEETTE
T ss_pred eCCCeEEEEECCC---CcEEEEecCC-CcEEEEEEcCCCC-------------EEEEEcCC-CcEEEEeCcC
Confidence 9999999999998 4667777654 6899999999998 77777654 5999998754
No 67
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.4e-35 Score=280.34 Aligned_cols=238 Identities=24% Similarity=0.416 Sum_probs=200.8
Q ss_pred cEEEEEe--cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEe
Q 012007 125 HIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKR 200 (473)
Q Consensus 125 ~V~~~~~--~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 200 (473)
.|.++++ +|++|++|+.||.|+|||.. +.+..+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.....
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~- 203 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL- 203 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-
Confidence 3777665 58999999999999999976 456678899999999999999999999999999999999887643322
Q ss_pred eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEe------
Q 012007 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESI------ 273 (473)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~------ 273 (473)
.+...+.+++|+| ++.+|++|+.|+.|++||+++++.+..+
T Consensus 204 --------------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~ 251 (393)
T 1erj_A 204 --------------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 251 (393)
T ss_dssp --------------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----
T ss_pred --------------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC
Confidence 2667899999999 8999999999999999999999888776
Q ss_pred -ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc------ceeeeeeeccCCccEEEEEEccCCCEEEEeCCC
Q 012007 274 -NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT------KHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345 (473)
Q Consensus 274 -~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 345 (473)
.+|...|.+++|++++ +|++|+.|+.|++||++...... .......+.+|...|.+++|+|++.+|++|+.|
T Consensus 252 ~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D 331 (393)
T 1erj_A 252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 331 (393)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT
T ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC
Confidence 5789999999999998 89999999999999997532210 112334567899999999999999999999999
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEEe--------cCCEEEEEeCCCcEEEEecCC
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLAA--------AGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--------~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+.|++||++++.. ...+.+|...|.++.+ ++++|++|+.||+|+||++..
T Consensus 332 ~~v~iwd~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 332 RGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SEEEEEETTTCCE-EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CeEEEEECCCCeE-EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999987654 3577899999988875 467999999999999999865
No 68
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1e-34 Score=305.34 Aligned_cols=290 Identities=18% Similarity=0.270 Sum_probs=246.5
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
+...+.+|.+.|.+++++ |++||+|+.||.|+|||.. +.+..+.+|.+.|.+++|+|++++|++|+.||.|++||+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 467889999999998865 8899999999999999965 456778899999999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-ee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KC 269 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~-~~ 269 (473)
.+++...... +|...|.+++|+|++++|++++.||.|++||+.++ ..
T Consensus 85 ~~~~~~~~~~--------------------------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 132 (814)
T 3mkq_A 85 NTGEKVVDFE--------------------------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132 (814)
T ss_dssp TTCCEEEEEE--------------------------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE
T ss_pred CCCcEEEEEe--------------------------------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 8876544332 38999999999999999999999999999999887 77
Q ss_pred eEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc--CCCEEEEeCCC
Q 012007 270 LESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ--ESAVVYCGSSD 345 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~d 345 (473)
...+..|...|.+++|+| ++ .+++++.||.|++||+.... ........+...+.+++|+| ++.+|++++.|
T Consensus 133 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 207 (814)
T 3mkq_A 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (814)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----CSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence 788889999999999999 55 89999999999999986432 22233344558899999999 99999999999
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
|.|++||++++.. ...+.+|...+.++. +++++|++++.||.|++||+.+ ...+..+..|...|.+++|+|++.
T Consensus 208 g~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~ 283 (814)
T 3mkq_A 208 LTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST---YKVEKTLNVGLERSWCIATHPTGR 283 (814)
T ss_dssp SEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT---CSEEEEECCSSSSEEEEEECTTCG
T ss_pred CEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CcEEEEeecCCCcEEEEEEccCCC
Confidence 9999999987544 456677887776655 5689999999999999999988 577888889999999999999986
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
. ++++++.|+.+.+|++....+
T Consensus 284 ~------------~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 284 K------------NYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp G------------GEEEEEETTEEEEEECSCCSC
T ss_pred c------------eEEEEEeCCCEEEEEcCCCCc
Confidence 3 445555677899999876544
No 69
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-34 Score=273.11 Aligned_cols=257 Identities=19% Similarity=0.282 Sum_probs=204.8
Q ss_pred cccccccCcccEEEEEE-----eC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeec
Q 012007 153 EFSGFKSNSGLVKAIII-----SG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRN 226 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~-----s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (473)
....+.+|.+.|++++| ++ ++++|++|+.|++|++||+...+...... .
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~-------------------------~ 67 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG-------------------------I 67 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSE-------------------------E
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccc-------------------------c
Confidence 34568899999999999 66 89999999999999999987643210000 0
Q ss_pred ceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeC
Q 012007 227 RSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRR 305 (473)
Q Consensus 227 ~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~ 305 (473)
......+|...|.+++|+|++.+|++|+.|++|++||+++++.+..+.+|...|.+++|+|++ +|++++.|+.|++||+
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 011223599999999999999999999999999999999999999999999999999999998 8999999999999998
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEccCC----------CEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE-
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQES----------AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA- 374 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~- 374 (473)
... ..........|...|.+++|+|++ .+|++++.||.|++||... .....+.+|...+.+++
T Consensus 148 ~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~ 221 (343)
T 2xzm_R 148 LGE----CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSI 221 (343)
T ss_dssp SSC----EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEE
T ss_pred cCC----ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEE
Confidence 621 111122234788999999999987 7999999999999999543 33356778988887766
Q ss_pred -ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 375 -AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 375 -~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+++++|++|+.||.|++||+.... .....+ .+...|.+++|+|++. +++ ++.|+.|++|++.
T Consensus 222 s~~g~~l~sgs~dg~v~iwd~~~~~--~~~~~~-~~~~~v~~v~~sp~~~-------------~la-~~~d~~v~iw~~~ 284 (343)
T 2xzm_R 222 SPNGKYIATGGKDKKLLIWDILNLT--YPQREF-DAGSTINQIAFNPKLQ-------------WVA-VGTDQGVKIFNLM 284 (343)
T ss_dssp CTTSSEEEEEETTCEEEEEESSCCS--SCSEEE-ECSSCEEEEEECSSSC-------------EEE-EEESSCEEEEESS
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCc--ccceee-cCCCcEEEEEECCCCC-------------EEE-EECCCCEEEEEeC
Confidence 569999999999999999995422 222222 2455799999999987 555 5568889999998
Q ss_pred CCCC
Q 012007 454 EHAP 457 (473)
Q Consensus 454 ~~~~ 457 (473)
....
T Consensus 285 ~~~~ 288 (343)
T 2xzm_R 285 TQSK 288 (343)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7654
No 70
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=277.93 Aligned_cols=287 Identities=18% Similarity=0.255 Sum_probs=231.5
Q ss_pred ceeeeeeecccEEEEEec-----CCEEEEeeCCCcEEEeeCCc---cc-cccccCcccEEEEEEeCCCCEEEEEeCCCeE
Q 012007 115 LIGSIVRKEGHIYSLAAS-----GDLLYTGSDSKNIRVWKNLK---EF-SGFKSNSGLVKAIIISGDSNKIFTGHQDGKI 185 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~-----g~~l~tg~~dg~i~vwd~~~---~~-~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 185 (473)
.+..+.+|.+.|.+++++ |++|++|+.||.|+|||... .+ ..+.+|.+.|.+++|+|++++|++++.||.|
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA 110 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcE
Confidence 456778999999999876 37999999999999999653 22 5678899999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE--cCCCCEEEEEeCCCCEEEEE
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL--NAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~s~s~dg~v~vwd 263 (473)
++||+.+++.... .+|...|.+++| ++++.+|++++.|+.|++||
T Consensus 111 ~iwd~~~~~~~~~---------------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 157 (368)
T 3mmy_A 111 KMWDLSSNQAIQI---------------------------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157 (368)
T ss_dssp EEEETTTTEEEEE---------------------------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEEC
T ss_pred EEEEcCCCCceee---------------------------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEE
Confidence 9999988764332 249999999999 88999999999999999999
Q ss_pred cCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE----E
Q 012007 264 ISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV----V 339 (473)
Q Consensus 264 ~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~----l 339 (473)
+++++.+..+..+. .+.++.+..+ .+++++.++.+++|+++... .........+...+.++++.++... +
T Consensus 158 ~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (368)
T 3mmy_A 158 TRSSNPMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQP----SEFRRIESPLKHQHRCVAIFKDKQNKPTGF 231 (368)
T ss_dssp SSCSSCSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSC----EEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred CCCCcEEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEecccc----chhhhccccccCCCceEEEcccCCCCCCeE
Confidence 99999999988765 5666666543 78888999999999997432 1122222334455666666655544 9
Q ss_pred EEeCCCCcEEEEecCCcc--cccceeecCcc------------eEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEE
Q 012007 340 YCGSSDGLVNFWECEKHL--SHGGVLRGHKM------------AVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCL 403 (473)
Q Consensus 340 ~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~------------~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 403 (473)
++++.||.|++||++... .....+.+|.. .+.++. +++++|++|+.||.|++||+.+ ..++
T Consensus 232 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~---~~~~ 308 (368)
T 3mmy_A 232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA---RTKL 308 (368)
T ss_dssp EEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT---TEEE
T ss_pred EEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC---CcEE
Confidence 999999999999998653 33345666664 566555 5689999999999999999998 5788
Q ss_pred EEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 404 AVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 404 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
..+.+|...|++++|+|++. +|++++.|+..+.|++-..+
T Consensus 309 ~~~~~~~~~v~~~~~s~~g~-------------~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 309 KTSEQLDQPISACCFNHNGN-------------IFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp EECCCCSSCEEEEEECTTSS-------------CEEEEECCCSTTCGGGCCTT
T ss_pred EEecCCCCCceEEEECCCCC-------------eEEEEecccccccccccCCC
Confidence 99999999999999999998 89999999877776665443
No 71
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-36 Score=294.39 Aligned_cols=284 Identities=11% Similarity=0.104 Sum_probs=208.0
Q ss_pred eeeeeecccEEEEEec--------CCEEEEeeCCCcEEEeeCCcc-------------ccccccCcccEEEEEEeCCCCE
Q 012007 117 GSIVRKEGHIYSLAAS--------GDLLYTGSDSKNIRVWKNLKE-------------FSGFKSNSGLVKAIIISGDSNK 175 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~~--------g~~l~tg~~dg~i~vwd~~~~-------------~~~~~~h~~~V~~l~~s~~~~~ 175 (473)
.++.+|.+.|.+++|+ +.+||+|+.||+|+|||+... ...+.+|...|.+++|++++ .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~ 279 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T 279 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence 3466788999988875 359999999999999997532 12567899999999999865 8
Q ss_pred EEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE--EEcCCC-CEEEE
Q 012007 176 IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL--SLNAEQ-GLLYS 252 (473)
Q Consensus 176 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l--~~~~~~-~~l~s 252 (473)
|++|+.||+|++||+.++..... ...+|...|.++ .|++++ .+|++
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~-------------------------------~~~~H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSF-------------------------------YDQVHDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSE-------------------------------EEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred EEEEeCCCEEEEEECCCCCCceE-------------------------------EeecccccEEEEEEEcCCCCCeEEEE
Confidence 99999999999999986532211 112499999999 567887 89999
Q ss_pred EeCCCCEEEEEcCCCeeeEEeecCCC--ceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEE
Q 012007 253 GSWDKTLKVWRISDCKCLESINAHDD--AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~~~~~--~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (473)
|+.|++|+|||+++++++..+.+|.. .|.+++|+|++ .+++++.|+.|++||++... ....+.+|...|++
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~------~~~~l~gH~~~V~s 402 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF------AVHPLVSRETTITA 402 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT------CCEEEEECSSCEEE
T ss_pred eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc------cceeeecCCCceEE
Confidence 99999999999999888777776653 58899999977 88999999999999997432 23456689999999
Q ss_pred EEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-----CcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCceeE
Q 012007 330 LAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-----HKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAHSC 402 (473)
Q Consensus 330 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 402 (473)
++|+|++++|++|+.||+|++||+.... . ..... +...+.++ +++++.+. ... .+.+|+... ...+
T Consensus 403 va~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~-~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~--~g~~ 475 (524)
T 2j04_B 403 IGVSRLHPMVLAGSADGSLIITNAARRL-L-HGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTV--NDVS 475 (524)
T ss_dssp EECCSSCCBCEEEETTTEEECCBSCSST-T-TCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC---------
T ss_pred EEeCCCCCeEEEEECCCEEEEEechHhh-c-cccccCccceeeeEEEEeccCCCCCeEE-ccC--Cceeccccc--CCcc
Confidence 9999999999999999999999986532 1 11111 11134344 45566442 222 233333321 1356
Q ss_pred EEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 403 LAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 403 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
+..+.+|...|.+++|+|++.. + ..+|+|+.||.|+||++.-.
T Consensus 476 ~~~l~gh~~~V~~Vafsp~~~~-------~---~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 476 KAKIDAHGINITCTKWNETSAG-------G---KCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ------CCCSCCCEEECCSTTT-------T---TEEEEECTTSEEEEEECSCC
T ss_pred eeeecCCCceEEEEECCCCCCc-------c---HHHHhhccCceEEEEEcccc
Confidence 7788999999999999999631 0 07999999999999998643
No 72
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=275.61 Aligned_cols=255 Identities=18% Similarity=0.230 Sum_probs=211.3
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
.+..+.+|.+.|.+++|+|++++|++|+.||.|++||+.......... ..
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------------------------------~~ 52 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT------------------------------LT 52 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE------------------------------EC
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeE------------------------------ec
Confidence 456788999999999999999999999999999999997443222211 12
Q ss_pred eccCCeeEEEEcCC--CCEEEEEeCCCCEEEEEcCCCe--eeEEeecCCCceeEEEEcCC--C-EEEEEeCCCcEEEEeC
Q 012007 233 RHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISDCK--CLESINAHDDAINSVVAGFD--S-LVFTGSADGTVKVWRR 305 (473)
Q Consensus 233 ~~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~-~l~s~~~dg~i~vwd~ 305 (473)
+|...|.+++|+++ +.+|++|+.||.|++||+.+++ .+..+..|...|.+++|+|+ + ++++++.||.|++||+
T Consensus 53 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~ 132 (379)
T 3jrp_A 53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 132 (379)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEec
Confidence 49999999999987 9999999999999999999987 77788889999999999998 5 8999999999999999
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEcc-------------CCCEEEEeCCCCcEEEEecCCccc---ccceeecCcce
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQ-------------ESAVVYCGSSDGLVNFWECEKHLS---HGGVLRGHKMA 369 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~ 369 (473)
+.... .....+..|...|.+++|+| ++.+|++++.||.|++||++.... ....+.+|...
T Consensus 133 ~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~ 208 (379)
T 3jrp_A 133 KENGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 208 (379)
T ss_dssp CTTSC----CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred CCCCc----eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc
Confidence 75322 22345678999999999999 699999999999999999976432 33456678888
Q ss_pred EEEEEe--c---CCEEEEEeCCCcEEEEecCCCCceeEEEE--ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 370 VLCLAA--A---GNLVFSGSADRNICLWRREESGAHSCLAV--LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 370 v~~~~~--~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
+.++.+ + +++|++++.||.|++||+..+........ ...|...|++++|+|++. +|++++
T Consensus 209 v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-------------~l~~~~ 275 (379)
T 3jrp_A 209 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-------------VLALSG 275 (379)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-------------CEEEEE
T ss_pred EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC-------------EEEEec
Confidence 877664 5 78999999999999999987532223333 345889999999999998 799999
Q ss_pred CCCcEEEEEcCC
Q 012007 443 LDKSVKVWRVSE 454 (473)
Q Consensus 443 ~Dg~v~iW~i~~ 454 (473)
.||.|++|++..
T Consensus 276 ~dg~i~iw~~~~ 287 (379)
T 3jrp_A 276 GDNKVTLWKENL 287 (379)
T ss_dssp SSSSEEEEEEEE
T ss_pred CCCcEEEEeCCC
Confidence 999999999984
No 73
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.7e-35 Score=319.00 Aligned_cols=290 Identities=19% Similarity=0.294 Sum_probs=246.0
Q ss_pred eeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
...+.+|.+.|+++++ +|++||+|+.||+|+|||.. +.+..+.+|.+.|.+++|+|++++|++|+.||.|++||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 3467889999998776 58899999999999999975 5567788999999999999999999999999999999999
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCCCee
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
+++...... +|...|.+++|++ ++.++++|+.|+.|++||+.++++
T Consensus 688 ~~~~~~~~~--------------------------------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~ 735 (1249)
T 3sfz_A 688 TGKLVHTYD--------------------------------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 735 (1249)
T ss_dssp TCCEEEEEE--------------------------------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred CCceEEEEc--------------------------------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence 886544332 4899999999999 566999999999999999999999
Q ss_pred eEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeee-------eeccCCccEEEEEEccCCCEEEE
Q 012007 270 LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQ-------VLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
+..+.+|...|.+++|+|++ .+++++.||.|++||++............ ........+.+++|+|++..+++
T Consensus 736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1249)
T 3sfz_A 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815 (1249)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence 99999999999999999998 89999999999999997432211110000 11123447889999999999998
Q ss_pred eCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe
Q 012007 342 GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE 419 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~ 419 (473)
++ ++.+.+||+.+.........+|...+.++ ++++.++++++.||.|++||+.+ ...+..+.+|...|++++|+
T Consensus 816 ~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~---~~~~~~~~~h~~~v~~v~~s 891 (1249)
T 3sfz_A 816 AA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS---RLKVADCRGHLSWVHGVMFS 891 (1249)
T ss_dssp EE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT---TEEEEEECCCSSCEEEEEEC
T ss_pred Ec-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC---CceeeecCCCccceEEEEEC
Confidence 87 68999999998776666666777777555 56799999999999999999998 57788899999999999999
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
|++. +|++++.||.|++|++..
T Consensus 892 pdg~-------------~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 892 PDGS-------------SFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp TTSS-------------EEEEEETTSCEEEEEHHH
T ss_pred CCCC-------------EEEEEeCCCeEEEEEccc
Confidence 9998 899999999999999864
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.5e-34 Score=279.18 Aligned_cols=303 Identities=18% Similarity=0.309 Sum_probs=237.8
Q ss_pred ccceeeeeeecccEEEEEec-CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEe--CCCCEEEEEeCCCeEEE
Q 012007 113 NGLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIIS--GDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s--~~~~~l~s~~~dg~i~v 187 (473)
...+..+.+|.+.|.++.++ +.+|++|+.||+|++||.. +.+..+.+|.+.|.+++|+ +++++|++|+.||.|++
T Consensus 152 ~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~v 231 (464)
T 3v7d_B 152 KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231 (464)
T ss_dssp TEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEE
T ss_pred CcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEE
Confidence 34677888999999999987 4499999999999999975 4567788999999999998 57889999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
||+.+............. . .......... .......+|...|.++ ++++++|++|+.|+.|++||+.++
T Consensus 232 wd~~~~~~~~~~~~~~~~--~-~~~~~~~~~~------~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~ 300 (464)
T 3v7d_B 232 WKLPKESSVPDHGEEHDY--P-LVFHTPEENP------YFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM 300 (464)
T ss_dssp EECCCCCCC------CCS--S-EEESCGGGCT------TEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT
T ss_pred eeCCCCcccccccccCCc--c-eEeeccCCCe------EEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC
Confidence 999877543322111000 0 0000000000 0012334588888877 567899999999999999999999
Q ss_pred eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
+++..+.+|...|.++++++++ .+++|+.||.|++||++.+ .....+.+|...|.+++|+ +.+|++++.||
T Consensus 301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg 372 (464)
T 3v7d_B 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG------ELMYTLQGHTALVGLLRLS--DKFLVSAAADG 372 (464)
T ss_dssp EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCC
Confidence 9999999999999999999987 9999999999999999732 3456778899999999997 57999999999
Q ss_pred cEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEE-ecCCCCceeEEEEecCCCCC
Q 012007 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV-LTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~ 425 (473)
.|++||+++..........+...+.++++++++|++|+ ||.|++||+.+ .+++.. +.+|...|.+++|+.. .
T Consensus 373 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~---g~~~~~~~~~~~~~v~~v~~~~~-~-- 445 (464)
T 3v7d_B 373 SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS---GKLVHANILKDADQIWSVNFKGK-T-- 445 (464)
T ss_dssp EEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT---CCEEESCTTTTCSEEEEEEEETT-E--
T ss_pred cEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC---CcEEehhhccCCCcEEEEEecCC-E--
Confidence 99999998865554444555667789999999999999 89999999998 456664 6788999999999833 2
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
++++++.||.+.+|-+
T Consensus 446 -----------l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 446 -----------LVAAVEKDGQSFLEIL 461 (464)
T ss_dssp -----------EEEEEEETTEEEEEEE
T ss_pred -----------EEEEEEeCCeEEEEEe
Confidence 6777778887665543
No 75
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.9e-34 Score=288.09 Aligned_cols=295 Identities=15% Similarity=0.179 Sum_probs=227.9
Q ss_pred cceeeeeeecccEEEEEec--CC-EEEEeeCCCcEEEeeCC--ccccccccCcc---cEEEEEEeCC-CCEEEEEeCCCe
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GD-LLYTGSDSKNIRVWKNL--KEFSGFKSNSG---LVKAIIISGD-SNKIFTGHQDGK 184 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~-~l~tg~~dg~i~vwd~~--~~~~~~~~h~~---~V~~l~~s~~-~~~l~s~~~dg~ 184 (473)
..+..+.+|.+.|.++.++ ++ +|++|+.||.|++||.. +.+..+.+|.. .|.+++|+|+ +++|++++.||.
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 230 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence 3567788899999998876 54 89999999999999965 45667788998 9999999999 999999999999
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
|++||+.+++......... ..|...|.+++|+ ++.+|++++.|+.|++||+
T Consensus 231 i~vwd~~~~~~~~~~~~~~----------------------------~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~ 281 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQ----------------------------EPVQGGIFALSWL-DSQKFATVGADATIRVWDV 281 (615)
T ss_dssp EEEEETTTCCEEEECCBTT----------------------------BCCCSCEEEEEES-SSSEEEEEETTSEEEEEET
T ss_pred EEEEECCCCCEeEEecccc----------------------------cccCCceEEEEEc-CCCEEEEEcCCCcEEEEEC
Confidence 9999998876544331100 0288999999999 9999999999999999999
Q ss_pred CCCeeeEEeecC----CCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeecc------------------
Q 012007 265 SDCKCLESINAH----DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK------------------ 322 (473)
Q Consensus 265 ~~~~~~~~~~~~----~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------------------ 322 (473)
++++.+..+..+ ...+.++.+..+.++++++.||.|++||+.... ....+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~------~~~~~~~~~~~v~~~~~~~l~~~~~ 355 (615)
T 1pgu_A 282 TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE------VLKTISGHNKGITALTVNPLISGSY 355 (615)
T ss_dssp TTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE------EEEEECCCSSCEEEEETTTTEEEET
T ss_pred CCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc------EEEEEeCCCCCEEEEEecCcEEECC
Confidence 999999998876 367788888755699999999999999986321 1122222
Q ss_pred ---------------CCccEEEEEEccC----------------------------------------------------
Q 012007 323 ---------------HENAVTALAVNQE---------------------------------------------------- 335 (473)
Q Consensus 323 ---------------~~~~v~~l~~~~~---------------------------------------------------- 335 (473)
|...|.+++| ++
T Consensus 356 dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 434 (615)
T 1pgu_A 356 DGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 434 (615)
T ss_dssp TSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEET
T ss_pred CCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEec
Confidence 3333333333 22
Q ss_pred ---------------------CCEEEEeCC-CCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEE
Q 012007 336 ---------------------SAVVYCGSS-DGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICL 391 (473)
Q Consensus 336 ---------------------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~i 391 (473)
+++|++++. |+.|++||+.+.......+.+|...+.++.+ ++++|++++.||.|++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i 514 (615)
T 1pgu_A 435 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL 514 (615)
T ss_dssp TTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEE
Confidence 334444444 5555555554432211344567777777665 7999999999999999
Q ss_pred EecCCCCceeEEEEecC-CCCceeEEEEec----------CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 392 WRREESGAHSCLAVLTG-HTGPVKCLAVEE----------DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 392 wd~~~~~~~~~~~~~~~-h~~~V~~l~~~~----------~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
||+.+ .+++..+.+ |...|++++|+| ++. +|++++.||.|++|++..+.....
T Consensus 515 w~~~~---~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~-------------~l~~~~~dg~i~iw~~~~~~~~~~ 578 (615)
T 1pgu_A 515 YDLQS---REVKTSRWAFRTSKINAISWKPAEKGANEEEIEED-------------LVATGSLDTNIFIYSVKRPMKIIK 578 (615)
T ss_dssp EETTT---TEEEECCSCCCSSCEEEEEECCCC------CCSCC-------------EEEEEETTSCEEEEESSCTTCCEE
T ss_pred eeCCC---CcceeEeecCCCCceeEEEEcCccccccccccCCC-------------EEEEEcCCCcEEEEECCCCceech
Confidence 99988 577788888 999999999999 887 899999999999999998744433
No 76
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.1e-34 Score=275.71 Aligned_cols=280 Identities=17% Similarity=0.241 Sum_probs=218.8
Q ss_pred EEecCC---EEEEeeCCCcEEEeeCCc------cccccccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 129 LAASGD---LLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 129 ~~~~g~---~l~tg~~dg~i~vwd~~~------~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
++++++ ++++|+.||.|+||+..+ .+..+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++.....
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence 444444 344578899999999643 3456788999999999999 899999999999999999987743110
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEEcCCCeeeEEe--ec
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESI--NA 275 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~--~~ 275 (473)
.. .......+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+ ..
T Consensus 120 ~~-------------------------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 174 (402)
T 2aq5_A 120 LR-------------------------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV 174 (402)
T ss_dssp BC-------------------------SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT
T ss_pred cC-------------------------CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC
Confidence 00 0011223599999999999998 69999999999999999999999999 78
Q ss_pred CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeee-ccCCcc-EEEEEEccCCCEEEEe---CCCCcEE
Q 012007 276 HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVL-LKHENA-VTALAVNQESAVVYCG---SSDGLVN 349 (473)
Q Consensus 276 ~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~-v~~l~~~~~~~~l~~~---~~dg~i~ 349 (473)
|...|.+++|+|++ +|++++.||.|++||++.. . ....+ ..|... +.+++|+|++.+|++| +.|+.|+
T Consensus 175 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-----T-VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-----E-EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC-----c-eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 99999999999988 8999999999999999732 2 23344 567665 8999999999999999 8999999
Q ss_pred EEecCCcccccceee-cCcceEE--EEEecCCEEEE-EeCCCcEEEEecCCCCc-eeEEEEecCCCCceeEEEEecCCCC
Q 012007 350 FWECEKHLSHGGVLR-GHKMAVL--CLAAAGNLVFS-GSADRNICLWRREESGA-HSCLAVLTGHTGPVKCLAVEEDRDH 424 (473)
Q Consensus 350 iwd~~~~~~~~~~~~-~~~~~v~--~~~~~~~~l~s-~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~ 424 (473)
+||+++......... .|...+. ++++++++|++ |+.||.|++||+.++.. ...+..+. |...|.+++|+|++.
T Consensus 249 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~- 326 (402)
T 2aq5_A 249 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRG- 326 (402)
T ss_dssp EEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGG-
T ss_pred EEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEecccc-
Confidence 999987654333322 4444454 45667888864 55799999999998543 33444444 678999999999987
Q ss_pred CcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 425 DHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 425 ~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
++++ .|+.+++|++..+
T Consensus 327 ------------~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 327 ------------LEVN--KCEIARFYKLHER 343 (402)
T ss_dssp ------------SCGG--GTEEEEEEEEETT
T ss_pred ------------ccee--cceeEEEEEcCCC
Confidence 4543 5679999999864
No 77
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.2e-34 Score=313.25 Aligned_cols=290 Identities=20% Similarity=0.289 Sum_probs=237.8
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeC--CCCEEEEEeCCCeEEE
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISG--DSNKIFTGHQDGKIRI 187 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~v 187 (473)
..+..+.+|.+.|.+++++ |++|++|+.||.|+|||.. +.+..+.+|...|.+++|++ ++.++++|+.||.|++
T Consensus 648 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~v 727 (1249)
T 3sfz_A 648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727 (1249)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEE
T ss_pred CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEE
Confidence 4567788999999998874 8899999999999999975 55677889999999999999 5568999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
||+.++....... +|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 728 wd~~~~~~~~~~~--------------------------------~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~ 775 (1249)
T 3sfz_A 728 WDLNQKECRNTMF--------------------------------GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775 (1249)
T ss_dssp EETTSSSEEEEEC--------------------------------CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT
T ss_pred EECCCcchhheec--------------------------------CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCC
Confidence 9999876543322 48888999999999889999999999999988766
Q ss_pred eeeEEee-------------------------------------------------------cCCCceeEEEEcCCC-EE
Q 012007 268 KCLESIN-------------------------------------------------------AHDDAINSVVAGFDS-LV 291 (473)
Q Consensus 268 ~~~~~~~-------------------------------------------------------~~~~~v~~l~~~~~~-~l 291 (473)
+....+. +|...|.+++|+|++ .+
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 855 (1249)
T 3sfz_A 776 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA 855 (1249)
T ss_dssp EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEE
T ss_pred cccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEE
Confidence 5443321 677889999999987 89
Q ss_pred EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc-----------
Q 012007 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG----------- 360 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------- 360 (473)
++++.||.|++||+.. ......+.+|...|++++|+|++.+|++++.||.|++||+.+.....
T Consensus 856 ~~~~~dg~v~vwd~~~------~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 929 (1249)
T 3sfz_A 856 VIALSQYCVELWNIDS------RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929 (1249)
T ss_dssp EEECSSSCEEEEETTT------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEE
T ss_pred EEEeCCCeEEEEEcCC------CceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEE
Confidence 9999999999999863 23456678899999999999999999999999999999975321100
Q ss_pred -------------------------c--eeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCce
Q 012007 361 -------------------------G--VLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPV 413 (473)
Q Consensus 361 -------------------------~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V 413 (473)
. ..........+++++++++++|+.||.|++|++.+ ...+..+.+|...|
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~---~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAV 1006 (1249)
T ss_dssp EETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT---TSCEEECCCCSSCC
T ss_pred EcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC---CceeeecccCCCce
Confidence 0 00111233355667899999999999999999988 46677888999999
Q ss_pred eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 414 KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
++++|+|++. +|++++.||.|++|++..+..
T Consensus 1007 ~~l~~s~dg~-------------~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 1007 RHIQFTADGK-------------TLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp CCEEECSSSS-------------CEEEECSSSBEEEEETTTTEE
T ss_pred EEEEECCCCC-------------EEEEEcCCCEEEEEECCCCce
Confidence 9999999998 799999999999999887643
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-34 Score=270.67 Aligned_cols=260 Identities=20% Similarity=0.208 Sum_probs=210.4
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCC--CCEEEEEeCCCeE
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGD--SNKIFTGHQDGKI 185 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i 185 (473)
.++..+.+|.+.|.+++++ +++||+|+.||.|+|||+. +.+..+.+|.+.|.+++|+++ +++|++|+.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 3567889999999998865 8899999999999999864 345678889999999999987 8999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC--CCEEEEEeCCCCEEEEE
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd 263 (473)
++||+.+++....... ..|...|.+++|+|+ +.+|++++.|+.|++||
T Consensus 82 ~iwd~~~~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d 131 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVH------------------------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131 (379)
T ss_dssp EEEEEETTEEEEEEEE------------------------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCceeEeeee------------------------------cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence 9999987753222221 138899999999999 99999999999999999
Q ss_pred cCCCe--eeEEeecCCCceeEEEEcC-------------CC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccE
Q 012007 264 ISDCK--CLESINAHDDAINSVVAGF-------------DS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAV 327 (473)
Q Consensus 264 ~~~~~--~~~~~~~~~~~v~~l~~~~-------------~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 327 (473)
+.++. ....+..|...|.+++|+| ++ ++++++.||.|++||++... ........+..|...|
T Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 132 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--QTYVLESTLEGHSDWV 209 (379)
T ss_dssp CCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--TEEEEEEEECCCSSCE
T ss_pred cCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--cceeeEEEEecccCcE
Confidence 98873 4456678999999999999 34 89999999999999997543 2334556778899999
Q ss_pred EEEEEccC---CCEEEEeCCCCcEEEEecCCcccc----cceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCC
Q 012007 328 TALAVNQE---SAVVYCGSSDGLVNFWECEKHLSH----GGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 328 ~~l~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
.+++|+|+ +.+|++++.||.|++||++..... ......|...+.+++ +++++|++++.||.|++|++....
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 99999999 899999999999999999875321 122233666776555 579999999999999999998644
Q ss_pred ceeEEEE
Q 012007 399 AHSCLAV 405 (473)
Q Consensus 399 ~~~~~~~ 405 (473)
....+..
T Consensus 290 ~~~~~~~ 296 (379)
T 3jrp_A 290 KWEPAGE 296 (379)
T ss_dssp EEEEEEE
T ss_pred ccccccc
Confidence 4444443
No 79
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-34 Score=298.31 Aligned_cols=200 Identities=10% Similarity=0.050 Sum_probs=165.4
Q ss_pred eeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcccc-ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q 012007 118 SIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKEFS-GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
...+|.+.|.+++++ +++||+|+.||+|+||+...... ....|...|.+++|+| +++|++++.|+.|++||+.+++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 345899999988865 88999999999999999764322 2234788999999999 8899999999999999999876
Q ss_pred eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee----
Q 012007 195 ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL---- 270 (473)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~---- 270 (473)
...... |...|++++|+|++++|++|+.||.|++||++++++.
T Consensus 91 ~~~~~~---------------------------------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i 137 (902)
T 2oaj_A 91 VLTTVF---------------------------------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL 137 (902)
T ss_dssp EEEEEE---------------------------------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred EEEEEc---------------------------------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence 543322 6678999999999999999999999999999988764
Q ss_pred -------EEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeec------------------cC
Q 012007 271 -------ESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLL------------------KH 323 (473)
Q Consensus 271 -------~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------------~~ 323 (473)
..+.+|...|.+++|+|++ .+++|+.||.| +||++... ....+. .|
T Consensus 138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE------IKQSFIYELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE------EEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred ccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc------eEEEEecccCCcCCCccccccccccc
Confidence 2346788999999999973 89999999999 99997432 122222 34
Q ss_pred CccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc
Q 012007 324 ENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS 358 (473)
Q Consensus 324 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 358 (473)
...|++++|+|++.+|++++.||.|++||++++..
T Consensus 211 ~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 211 TPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp CCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 57899999999999999999999999999987543
No 80
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-33 Score=295.36 Aligned_cols=317 Identities=12% Similarity=0.133 Sum_probs=222.3
Q ss_pred eeeeecccEEEEEecC---CEEEEeeCCCcEEEeeCCc--ccccccc------------------CcccEEEEEEeCCCC
Q 012007 118 SIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKNLK--EFSGFKS------------------NSGLVKAIIISGDSN 174 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~g---~~l~tg~~dg~i~vwd~~~--~~~~~~~------------------h~~~V~~l~~s~~~~ 174 (473)
.+.+|.+.|.+++++. .+|++|+.||.| +||+.. .+..+.. |...|.+++|+|+|+
T Consensus 146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~ 224 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL 224 (902)
T ss_dssp CSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred ccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence 3467889999998864 589999999999 999763 2333433 467899999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCeeeEEeec----c-------------cccc-------------ceeEeec-CCC----cc
Q 012007 175 KIFTGHQDGKIRIWKVSRKNASVHKRVG----S-------------LPTF-------------KDYVKSS-VNP----KN 219 (473)
Q Consensus 175 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~-------------~~~~-------------~~~~~~~-~~~----~~ 219 (473)
+|++|+.||.|++||+.+++........ . .... ..++.+. .+. ..
T Consensus 225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 9999999999999999887654431110 0 0000 0111111 110 01
Q ss_pred --eEEEee--------------------cceeeEeeccCCeeEEEEcC----------CCCEEEEEeCCCCEEEEEcCCC
Q 012007 220 --YVEVRR--------------------NRSVLKIRHYDAVSCLSLNA----------EQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 220 --~~~~~~--------------------~~~~~~~~~~~~v~~l~~~~----------~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
.+.... ......+.+...|..+.+.+ +...+++++.|+.|++||+.++
T Consensus 305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g 384 (902)
T 2oaj_A 305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG 384 (902)
T ss_dssp EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence 111100 01111123567788888765 3447899999999999999777
Q ss_pred eeeEE-------e----------------------------------ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeC
Q 012007 268 KCLES-------I----------------------------------NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRR 305 (473)
Q Consensus 268 ~~~~~-------~----------------------------------~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~ 305 (473)
..... + .+|...+..++++|++ +|++|+.|++|++||+
T Consensus 385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~ 464 (902)
T 2oaj_A 385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA 464 (902)
T ss_dssp CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence 43321 2 2333344445556776 8999999999999999
Q ss_pred cccCCCcceeeeeee-----ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc-----------------------
Q 012007 306 ELQGKGTKHCLAQVL-----LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL----------------------- 357 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~-----~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~----------------------- 357 (473)
..+.......+...+ .+|...|.+++|+|++++||+|+.||+|+|||+.+..
T Consensus 465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (902)
T 2oaj_A 465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN 544 (902)
T ss_dssp SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGG
T ss_pred CCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence 754321111111111 2788999999999999999999999999999987542
Q ss_pred ---------------------cccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEE-----Eec-C
Q 012007 358 ---------------------SHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLA-----VLT-G 408 (473)
Q Consensus 358 ---------------------~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~-~ 408 (473)
.....+.+|...|.+++ ++| +||+|+.|++|+|||+++. ..+. .+. +
T Consensus 545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~---~~~~~~~~~~~~~g 620 (902)
T 2oaj_A 545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP---AIIYMENIREISGA 620 (902)
T ss_dssp GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT---EEEEEEEGGGTCSS
T ss_pred CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC---eEEEEeehhHhccc
Confidence 11345667888886655 679 9999999999999998773 3332 343 8
Q ss_pred CCCceeEEEEe-----cCC---CCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 409 HTGPVKCLAVE-----EDR---DHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 409 h~~~V~~l~~~-----~~~---~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
|.+.|++|+|+ ||+ . +|++|+.|++|++|++
T Consensus 621 h~~~V~sv~Fs~~~~~~Dg~~~~-------------~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 621 QSACVTCIEFVIMEYGDDGYSSI-------------LMVCGTDMGEVITYKI 659 (902)
T ss_dssp CCCCEEEEEEEEEECTTSSSEEE-------------EEEEEETTSEEEEEEE
T ss_pred cccceEEEEEEEEecCCCCCcce-------------EEEEEecCCcEEEEEE
Confidence 99999999999 885 4 8999999999999999
No 81
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-33 Score=287.19 Aligned_cols=286 Identities=15% Similarity=0.139 Sum_probs=232.3
Q ss_pred ecccEE--EEEecCCEEEEeeCCCcEEEeeCC------ccccccccCccc-EEEEEEeC--CCCEEEEEeCCCeEEEEeC
Q 012007 122 KEGHIY--SLAASGDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGL-VKAIIISG--DSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 122 h~~~V~--~~~~~g~~l~tg~~dg~i~vwd~~------~~~~~~~~h~~~-V~~l~~s~--~~~~l~s~~~dg~i~vwd~ 190 (473)
|.+.|. +++++|++|++++ ++.|+|||.. +....+.+|.+. |.+++|+| ++++|++|+.||.|++||+
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 344444 4666799999999 7899999975 356678899999 99999999 9999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC----CCEEEEEcCC
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD----KTLKVWRISD 266 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d----g~v~vwd~~~ 266 (473)
.++....... .........|...|.+++|+|++++|++++.+ +.|++|| .
T Consensus 96 ~~~~~~~~~~------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 96 TFDKESNSVE------------------------VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp EEEGGGTEEE------------------------EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--T
T ss_pred CCCccccccc------------------------ccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--C
Confidence 6541000000 00001112488999999999999999999987 6788887 6
Q ss_pred CeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc---cEEEEEEccC-CCEEE
Q 012007 267 CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN---AVTALAVNQE-SAVVY 340 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~-~~~l~ 340 (473)
++.+..+..|...|.++.|+|++ .+++++.|+.|++||+.. ......+..|.. .|++++|+|+ +++|+
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 223 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT------BEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC------cceeeeecccCCCCceEEEEEECCCCCCEEE
Confidence 77888999999999999999998 799999999999999863 234566778888 9999999999 99999
Q ss_pred EeCCCCcEEEEecCCcccccceee---cCcceEEEEEe-cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC----CCc
Q 012007 341 CGSSDGLVNFWECEKHLSHGGVLR---GHKMAVLCLAA-AGNLVFSGSADRNICLWRREESGAHSCLAVLTGH----TGP 412 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h----~~~ 412 (473)
+++.||.|++||++++........ +|...+.++.+ ++++|++++.|+.|++||+.+ .+.+..+..+ ...
T Consensus 224 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~ 300 (615)
T 1pgu_A 224 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT---SKCVQKWTLDKQQLGNQ 300 (615)
T ss_dssp EEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT---TEEEEEEECCTTCGGGC
T ss_pred EEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCC---CcEEEEEcCCCCcccCc
Confidence 999999999999987655443325 78888888877 799999999999999999998 4666666665 467
Q ss_pred eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 413 VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 413 V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+.++.|. ++. ++++++.||.|++|++..+..
T Consensus 301 ~~~~~~~-~~~-------------~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 301 QVGVVAT-GNG-------------RIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp EEEEEEE-ETT-------------EEEEEETTSCEEEEETTEEEE
T ss_pred eeEEEeC-CCC-------------eEEEEECCCCEEEEECCCCcE
Confidence 8888886 665 899999999999999987543
No 82
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.7e-33 Score=260.57 Aligned_cols=252 Identities=22% Similarity=0.351 Sum_probs=211.2
Q ss_pred ccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 154 FSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
..++++|.+.|++|+|+|+ +++|+||+.||+|+|||+...+....... ....
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~---------------------------~~l~ 83 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ---------------------------RALR 83 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE---------------------------EEEC
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee---------------------------EEEe
Confidence 3468999999999999997 68999999999999999987653222111 1122
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
+|...|.+++|+|++++|++|+.|+.|++|+............+...+..+.+.+++ .|++++.|+.+++||+.
T Consensus 84 ~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~----- 158 (340)
T 4aow_A 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL----- 158 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-----
T ss_pred CCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeC-----
Confidence 599999999999999999999999999999999999999888899999999998887 89999999999999986
Q ss_pred cceeeeeeeccCCccEEEEEEccCC--CEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCC
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQES--AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADR 387 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg 387 (473)
...........|...+..++|++++ .++++++.|+.|++||+++... ...+.+|...|.+++ +++++|++|+.||
T Consensus 159 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 159 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-KTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp SCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred CCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce-eeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 3334455667889999999998864 6788999999999999987544 456778998887766 5689999999999
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.|++||+.+ ..++..+..+ ..|.+++|+|++. +++++.|+.|++||+....
T Consensus 238 ~i~iwd~~~---~~~~~~~~~~-~~v~~~~~~~~~~--------------~~~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 238 QAMLWDLNE---GKHLYTLDGG-DIINALCFSPNRY--------------WLCAATGPSIKIWDLEGKI 288 (340)
T ss_dssp EEEEEETTT---TEEEEEEECS-SCEEEEEECSSSS--------------EEEEEETTEEEEEETTTTE
T ss_pred eEEEEEecc---CceeeeecCC-ceEEeeecCCCCc--------------eeeccCCCEEEEEECCCCe
Confidence 999999998 5667766654 6799999999875 6677789999999997653
No 83
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-34 Score=282.86 Aligned_cols=266 Identities=13% Similarity=0.065 Sum_probs=197.3
Q ss_pred eeeecccEEEEEe--cC---------CEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 119 IVRKEGHIYSLAA--SG---------DLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 119 l~~h~~~V~~~~~--~g---------~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
+..+.+.|++++| ++ ++||+|+.++.. -..+|+++.|++++.|++|+|
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~---------------------~~~~~~~~~laS~s~D~tI~i 187 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD---------------------EPLNEHLEMFDKEKHSSCIQI 187 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------CEEEEE
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC---------------------CccchhhhhhccCCCCceEEE
Confidence 3446788888765 34 689999876420 013689999999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC------CCEEEEEeCCCCEEE
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE------QGLLYSGSWDKTLKV 261 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~------~~~l~s~s~dg~v~v 261 (473)
||+.+++...... ....+|.+.|.+++|+|+ +.+|++++.||+|++
T Consensus 188 Wd~~~~~~~~~~~----------------------------~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvrl 239 (524)
T 2j04_B 188 FKMNTSTLHCVKV----------------------------QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINF 239 (524)
T ss_dssp EEEETTTCCEEEE----------------------------EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEE
T ss_pred EEccCCCCCceEE----------------------------EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEE
Confidence 9997765321110 011237789999999996 579999999999999
Q ss_pred EEcCCCee-----------eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEE
Q 012007 262 WRISDCKC-----------LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTAL 330 (473)
Q Consensus 262 wd~~~~~~-----------~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l 330 (473)
||+..++. ...+.+|...|.+++|++++.|++|+.||+|++||++.. ..+...+..|...|+++
T Consensus 240 Wd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~-----~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 240 LEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDP-----EVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBC-----SSCSEEEECSSSCEEEE
T ss_pred EEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCC-----CCceEEeecccccEEEE
Confidence 99976642 246778999999999998889999999999999999743 22344577899999999
Q ss_pred --EEccCC-CEEEEeCCCCcEEEEecCCcccccceeecCcc----eEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEE
Q 012007 331 --AVNQES-AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM----AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCL 403 (473)
Q Consensus 331 --~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 403 (473)
+|++++ .+|++++.|++|+|||+++..... .+.+|.. ...+++|++..|++++.|++|++||++. ..++
T Consensus 315 ~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~-~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~---~~~~ 390 (524)
T 2j04_B 315 STAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK-TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA---AFAV 390 (524)
T ss_dssp EEECCTTSCCEEEEEETTSEEEEECGGGHHHHC-EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC---TTCC
T ss_pred EEEcCCCCCeEEEEeccCCeEEEEECCCCCccc-ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc---cccc
Confidence 568887 899999999999999998754432 3444432 2367788899999999999999999988 3455
Q ss_pred EEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 404 AVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 404 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
..+.+|.+.|++|+|+|+++ +|++|+.||+|++|++...
T Consensus 391 ~~l~gH~~~V~sva~Sp~g~-------------~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 391 HPLVSRETTITAIGVSRLHP-------------MVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEEEECSSCEEEEECCSSCC-------------BCEEEETTTEEECCBSCSS
T ss_pred eeeecCCCceEEEEeCCCCC-------------eEEEEECCCEEEEEechHh
Confidence 66778999999999999998 8999999999999998653
No 84
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-34 Score=278.42 Aligned_cols=270 Identities=13% Similarity=0.259 Sum_probs=206.6
Q ss_pred EecCCEEEEeeCCCcEEEeeCC-cccccc-ccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCC---CCeeeEEeecc
Q 012007 130 AASGDLLYTGSDSKNIRVWKNL-KEFSGF-KSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSR---KNASVHKRVGS 203 (473)
Q Consensus 130 ~~~g~~l~tg~~dg~i~vwd~~-~~~~~~-~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~ 203 (473)
.++++.+++++ .|+.. +.+..+ .+|.+.|++++|+| ++++|++|+.||.|++||+.+ +...
T Consensus 36 ~~~~~~~~~~~------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~------- 102 (437)
T 3gre_A 36 GPIQEIVRSPN------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY------- 102 (437)
T ss_dssp CCCCCCCCCCC------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC-------
T ss_pred CCccccccccc------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc-------
Confidence 34455555443 37754 445566 78999999999999 999999999999999999865 2210
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC---CCeeeEEeec-----
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS---DCKCLESINA----- 275 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~---~~~~~~~~~~----- 275 (473)
......+|...|.+++|+|++++|++|+.||.|++||+. +++.+..+..
T Consensus 103 -----------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 159 (437)
T 3gre_A 103 -----------------------SSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK 159 (437)
T ss_dssp -----------------------SCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -----------------------ceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence 001122489999999999999999999999999999995 5544443332
Q ss_pred -------CCCceeEEE--EcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeecc--CCccEEEEEEccCCCEEEEeC
Q 012007 276 -------HDDAINSVV--AGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK--HENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 276 -------~~~~v~~l~--~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~ 343 (473)
+...+.++. +++++ ++++++.||.|++||++... ....+.. |...|++++|+|++.+|++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 233 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE------RLQIIENSPRHGAVSSICIDEECCVLILGT 233 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC------EEEEEECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred EEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe------eeEEEccCCCCCceEEEEECCCCCEEEEEc
Confidence 445566666 44555 89999999999999997422 3344445 889999999999999999999
Q ss_pred CCCcEEEEecCCcccccceeecCcceEEEEEe------cCCEEEEEeCCCcEEEEecCCCCceeEEEEecC---------
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA------AGNLVFSGSADRNICLWRREESGAHSCLAVLTG--------- 408 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------- 408 (473)
.||.|++||+++..........|...+.++.+ ++.+|++|+.||.|++||+.++ .++..+.+
T Consensus 234 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~ 310 (437)
T 3gre_A 234 TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG---HCQYAFINSDEQPSMEH 310 (437)
T ss_dssp TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT---EEEEEEESSSSCCCGGG
T ss_pred CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC---cEEEEEEcCCCCCccce
Confidence 99999999999865543333377778888743 3669999999999999999883 44544443
Q ss_pred -----------------CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 409 -----------------HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 409 -----------------h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
|...|++++|+ ++. +|++|+.||.|++||+.+++..
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-------------~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 311 FLPIEKGLEELNFCGIRSLNALSTISVS-NDK-------------ILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp GSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-------------EEEEEGGGTEEEEEETTCGGGC
T ss_pred ecccccccccceecccccCCceEEEEEC-Cce-------------EEEecCCCCeEEEEECCCcccc
Confidence 55667778887 444 8999999999999999887644
No 85
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.1e-33 Score=294.00 Aligned_cols=252 Identities=24% Similarity=0.326 Sum_probs=220.4
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
....+.+|.+.|.+++|+|++++|++|+.||.|++||+.++.......
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-------------------------------- 52 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-------------------------------- 52 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------------------
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe--------------------------------
Confidence 345678899999999999999999999999999999998876543332
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++ +|++++.||.|++||++.
T Consensus 53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~---- 128 (814)
T 3mkq_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN---- 128 (814)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG----
T ss_pred cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC----
Confidence 388999999999999999999999999999999999999999999999999999998 899999999999999973
Q ss_pred cceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE--EEEe--cCCEEEEEeCC
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL--CLAA--AGNLVFSGSAD 386 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--~~~~--~~~~l~s~~~d 386 (473)
.......+..|...|.+++|+| ++.+|++++.||.|++||+............+...+. ++++ ++.+|++++.|
T Consensus 129 -~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 207 (814)
T 3mkq_A 129 -NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (814)
T ss_dssp -TSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred -CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence 3345567778999999999999 8899999999999999999876555444444435554 4455 78999999999
Q ss_pred CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
|.|++||+.+ ..++..+.+|...|++++|+|++. +|++++.||.|++|++..+..
T Consensus 208 g~i~~~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~-------------~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 208 LTIKIWDYQT---KSCVATLEGHMSNVSFAVFHPTLP-------------IIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp SEEEEEETTT---TEEEEEEECCSSCEEEEEECSSSS-------------EEEEEETTSCEEEEETTTCSE
T ss_pred CEEEEEECCC---CcEEEEEcCCCCCEEEEEEcCCCC-------------EEEEEeCCCeEEEEECCCCcE
Confidence 9999999988 567888899999999999999998 899999999999999987653
No 86
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.7e-33 Score=263.16 Aligned_cols=249 Identities=14% Similarity=0.088 Sum_probs=207.5
Q ss_pred cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
+..|.++|.+++|+|++++|++|+.||.|++||+.+++...... ..+|..
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~------------------------------~~~h~~ 53 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE------------------------------LKEHNG 53 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE------------------------------EECCSS
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee------------------------------ecCCCC
Confidence 45589999999999999999999999999999998775211111 114899
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe--ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI--NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
.|.+++|+|++++|++++.|+.|++||+.+++....+ ..|...|.++.|++++ +|++++.||.|++||++... ..
T Consensus 54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--~~ 131 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN--DW 131 (372)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT--TE
T ss_pred cccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC--cc
Confidence 9999999999999999999999999999988765443 5789999999999988 89999999999999997433 11
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC-----------------cccccceeecCcceEEEEEe-
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK-----------------HLSHGGVLRGHKMAVLCLAA- 375 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~-----------------~~~~~~~~~~~~~~v~~~~~- 375 (473)
.........|...|.+++|+|++++|++++.||.|++||++. .......+.+|...+.++.+
T Consensus 132 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 211 (372)
T 1k8k_C 132 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 211 (372)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred eeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence 223344467899999999999999999999999999999641 12233445578888877665
Q ss_pred -cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 376 -AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 376 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
++++|++++.|+.|++||+.+ ..++..+..|..+|.+++|+|++. +|++| .|+.|++|++..
T Consensus 212 ~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~-------------~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 212 ANGSRVAWVSHDSTVCLADADK---KMAVATLASETLPLLAVTFITESS-------------LVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SSSSEEEEEETTTEEEEEEGGG---TTEEEEEECSSCCEEEEEEEETTE-------------EEEEE-TTSSCEEEEEET
T ss_pred CCCCEEEEEeCCCEEEEEECCC---CceeEEEccCCCCeEEEEEecCCC-------------EEEEE-eCCeEEEEEccC
Confidence 688999999999999999988 467888889999999999999987 67766 899999999987
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.7e-33 Score=265.90 Aligned_cols=256 Identities=13% Similarity=0.200 Sum_probs=212.1
Q ss_pred ccccCcccEEEEEEeCC----CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 156 GFKSNSGLVKAIIISGD----SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
...+|.+.|.+++|+|+ ...+++++.++.|++||+.+++..........
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~--------------------------- 65 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD--------------------------- 65 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC---------------------------
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc---------------------------
Confidence 34579999999999984 45677777788999999987654433221100
Q ss_pred eeccCCeeEEEEcCC----CCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeC
Q 012007 232 IRHYDAVSCLSLNAE----QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRR 305 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~ 305 (473)
..|...|.+++|+|+ +.+|++|+.||.|++||+.+++.+..+..|...|.+++|+| ++ +|++++.||.|++||+
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 027788999999998 67999999999999999999999999999999999999999 65 8999999999999999
Q ss_pred cccCCCcceeeeeee---ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc----------------------
Q 012007 306 ELQGKGTKHCLAQVL---LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG---------------------- 360 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------- 360 (473)
+... ....+ ..|...|.+++|+|++.+|++++.||.|++||+++.....
T Consensus 146 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 146 QTDT------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp TTTE------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred ecCe------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 7322 22333 6899999999999999999999999999999998643221
Q ss_pred -----ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCc-----------eeEEEEecCCCCceeEEEEecC--C
Q 012007 361 -----GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGA-----------HSCLAVLTGHTGPVKCLAVEED--R 422 (473)
Q Consensus 361 -----~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~h~~~V~~l~~~~~--~ 422 (473)
....+|...+.++.+++++|++++.|+.|++||+.+... ...+..+.+|...|++++|+|+ +
T Consensus 220 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 299 (366)
T 3k26_A 220 HFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ 299 (366)
T ss_dssp CCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred ccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence 112238888999999999999999999999999986421 2567888899999999999999 7
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
. +|++|+.||.|++||+..+++
T Consensus 300 ~-------------~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 300 K-------------MLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp S-------------EEEEECTTSCEEEEECCSSSG
T ss_pred c-------------EEEEEecCCcEEEEECCCCCC
Confidence 7 899999999999999998754
No 88
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=272.04 Aligned_cols=259 Identities=11% Similarity=0.050 Sum_probs=204.2
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccc
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
++++||+++|+++.|++|+ | .+....+.+|...|.+++|+|+| .++.+.+|+.+.... ..
T Consensus 22 ~~SpDG~~iASas~D~TV~--d-~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~---~~------- 81 (588)
T 2j04_A 22 TWARDGTLYLTTFPDISIG--Q-PKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL---LN------- 81 (588)
T ss_dssp EECTTSCEEEECSSSEEEE--E-ECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS---ST-------
T ss_pred EECCCCCEEEEEcCCceee--c-ccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCceE---ee-------
Confidence 4556799999999999999 6 44445668999999999999998 566655555432221 11
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCC-----ceeE
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD-----AINS 282 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-----~v~~ 282 (473)
..|...|.+++|+|+|.+|++++.||.|++||... ++..+. |.. .+.+
T Consensus 82 ------------------------~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~s 134 (588)
T 2j04_A 82 ------------------------SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHC 134 (588)
T ss_dssp ------------------------TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEE
T ss_pred ------------------------cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEE
Confidence 12678899999999999999999999999999544 666666 665 4999
Q ss_pred EEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc-eeeeeee----ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc
Q 012007 283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTK-HCLAQVL----LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 283 l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~----~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 356 (473)
++|+|++ +|++|+.||+|++||+..+..... ......+ .+|...|.+++|+|+| +++++.|+.|++||+...
T Consensus 135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSS
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCC
Confidence 9999999 999999999999999975321000 0122333 6788999999999999 778888999999999875
Q ss_pred ccc--ccee-ecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEE--ecCCCCCcccccC
Q 012007 357 LSH--GGVL-RGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAV--EEDRDHDHEYHQK 431 (473)
Q Consensus 357 ~~~--~~~~-~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~~~~~~~~ 431 (473)
... ...+ .+|...|.++++.|+.|++++ +++|++||+.+ ........+|...|..++| +|++.
T Consensus 213 ~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~---~~~~~~~~gh~~~V~~va~~~s~d~~-------- 280 (588)
T 2j04_A 213 SHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKN---YSISSLKTGSLENFHIIPLNHEKEST-------- 280 (588)
T ss_dssp SSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTT---TEEEEEECSCCSCCCEEEETTCSSCE--------
T ss_pred ccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCC---CeEEEEEcCCCceEEEEEeeeCCCCC--------
Confidence 532 1234 478888888777789999998 69999999987 3442333389999999999 99987
Q ss_pred CCccEEEEEeeCCCcEEEEEcC
Q 012007 432 GDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 432 ~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.|++++.||+ ++|.+.
T Consensus 281 -----~La~a~edG~-klw~~d 296 (588)
T 2j04_A 281 -----ILLMSNKTSY-KVLLED 296 (588)
T ss_dssp -----EEEECSSCEE-EEEESS
T ss_pred -----EEEEEcCCCC-EEEeec
Confidence 8999999999 999986
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-34 Score=274.61 Aligned_cols=250 Identities=11% Similarity=0.081 Sum_probs=194.8
Q ss_pred cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
+..+.+.|.+++|+|++++|++|+.||.|++||+.++....... +.+|..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~------------------------------~~~h~~ 56 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHART------------------------------FSDHDK 56 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCC------------------------------BCCCSS
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEE------------------------------EecCCc
Confidence 34467899999999999999999999999999998763111111 114999
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe---eeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK---CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~---~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
.|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+|++ +|++++.|+.|++||++...
T Consensus 57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--- 133 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN--- 133 (377)
T ss_dssp CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------
T ss_pred eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc---
Confidence 99999999999999999999999999999877 677778899999999999987 89999999999999997432
Q ss_pred ceeeeeeecc-CCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc-----------------ccccceeecCcceEEEEE
Q 012007 313 KHCLAQVLLK-HENAVTALAVNQESAVVYCGSSDGLVNFWECEKH-----------------LSHGGVLRGHKMAVLCLA 374 (473)
Q Consensus 313 ~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~~v~~~~ 374 (473)
.......+.. |...|++++|+|++++|++++.|+.|++||++.. ......+ +|...+.++.
T Consensus 134 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 134 DWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred cceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 1112344555 9999999999999999999999999999998521 1122223 7888887765
Q ss_pred --ecCCEEEEEeCCCcEEEEecCCCCc-eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 375 --AAGNLVFSGSADRNICLWRREESGA-HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 375 --~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+++++|++++.||.|++||+.++.. ...+..+.+|...|.+++|+|++. +|++|+.|+.+ +|+
T Consensus 213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-------------IVAAGYNYSPI-LLQ 278 (377)
T ss_dssp ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE-------------EEEEESSSSEE-EEC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC-------------EEEEEcCCcEE-EEE
Confidence 5689999999999999999998432 123677889999999999999998 88888776655 776
Q ss_pred cCC
Q 012007 452 VSE 454 (473)
Q Consensus 452 i~~ 454 (473)
...
T Consensus 279 ~~~ 281 (377)
T 3dwl_C 279 GNE 281 (377)
T ss_dssp CCC
T ss_pred eCC
Confidence 653
No 90
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-32 Score=256.31 Aligned_cols=254 Identities=11% Similarity=0.184 Sum_probs=215.0
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++...... +|
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------------------~h 73 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD--------------------------------GH 73 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC--------------------------------CC
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh--------------------------------hc
Confidence 3578899999999999999999999999999999998876543322 48
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCC-----CcEEEEeCccc
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSAD-----GTVKVWRRELQ 308 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~d-----g~i~vwd~~~~ 308 (473)
...|.+++|+|++++|++++.||.|++||+.+++.+..+. +...+.++.|++++ .+++++.+ |.|++||++..
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence 9999999999999999999999999999999999999888 88899999999998 88888888 99999999754
Q ss_pred CCCcce-----eeeeeeccCCc--cEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCE
Q 012007 309 GKGTKH-----CLAQVLLKHEN--AVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNL 379 (473)
Q Consensus 309 ~~~~~~-----~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~ 379 (473)
...... .....+..|.. .+.+++|+|++++|++++.||.|++||+++.......+..|...+.++.+ ++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCE
Confidence 321111 12233445555 89999999999999999999999999999855555677788888877665 6999
Q ss_pred EEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCC--------------
Q 012007 380 VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDK-------------- 445 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg-------------- 445 (473)
|++++.|+.|++||+.+ ...+..+. +...+.+++|+|++. ++++++.++
T Consensus 233 l~~~~~d~~i~v~d~~~---~~~~~~~~-~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~~~~~~~~~~ 295 (369)
T 3zwl_B 233 FITSSRDTNSFLVDVST---LQVLKKYE-TDCPLNTAVITPLKE-------------FIILGGGQEAKDVTTTSANEGKF 295 (369)
T ss_dssp EEEEETTSEEEEEETTT---CCEEEEEE-CSSCEEEEEECSSSS-------------EEEEEECCC-------------C
T ss_pred EEEecCCceEEEEECCC---Cceeeeec-CCCCceeEEecCCCc-------------eEEEeecCCCceEEEEecCCCcc
Confidence 99999999999999998 45555555 678899999999998 899998888
Q ss_pred cEEEEEcCCCCCC
Q 012007 446 SVKVWRVSEHAPD 458 (473)
Q Consensus 446 ~v~iW~i~~~~~~ 458 (473)
.|++|++..++..
T Consensus 296 ~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 296 EARFYHKIFEEEI 308 (369)
T ss_dssp EEEEEETTTCCEE
T ss_pred eeEEEecCCCcch
Confidence 8999999877544
No 91
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2e-32 Score=282.51 Aligned_cols=252 Identities=21% Similarity=0.371 Sum_probs=207.5
Q ss_pred ccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 156 GFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
.+++|.+.|++|+|++++ ++|++|+.||+|++|++.......... .....+|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~---------------------------~~~~~~h 429 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVA---------------------------QRRLTGH 429 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEE---------------------------EEEEECC
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccc---------------------------cceecCC
Confidence 467899999999999875 799999999999999997653211000 0122359
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|++++ +|++++.|+.|++||.... ..
T Consensus 430 ~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~---~~ 506 (694)
T 3dm0_A 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE---CK 506 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC---EE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC---cc
Confidence 9999999999999999999999999999999999999999999999999999998 8999999999999997521 11
Q ss_pred eeeeeeeccCCccEEEEEEccCC--CEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcE
Q 012007 314 HCLAQVLLKHENAVTALAVNQES--AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNI 389 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i 389 (473)
........+|...|.+++|+|++ .+|++++.|+.|++||+++.. ....+.+|...|.+++ +++++|++|+.||.|
T Consensus 507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i 585 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585 (694)
T ss_dssp EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 22223345788999999999986 689999999999999998754 3456778998887766 469999999999999
Q ss_pred EEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 390 CLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 390 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
++||+.+ .+++..+.. ...|.+++|+|++. +|+++ .|+.|+|||+..+.
T Consensus 586 ~iwd~~~---~~~~~~~~~-~~~v~~~~~sp~~~-------------~l~~~-~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 586 LLWDLAE---GKKLYSLEA-NSVIHALCFSPNRY-------------WLCAA-TEHGIKIWDLESKS 634 (694)
T ss_dssp EEEETTT---TEEEECCBC-SSCEEEEEECSSSS-------------EEEEE-ETTEEEEEETTTTE
T ss_pred EEEECCC---CceEEEecC-CCcEEEEEEcCCCc-------------EEEEE-cCCCEEEEECCCCC
Confidence 9999998 456666654 46799999999987 55555 56779999998764
No 92
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.9e-32 Score=263.39 Aligned_cols=257 Identities=14% Similarity=0.196 Sum_probs=208.3
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
...+.+|.+.|++++|+| ++|++|+.||.|++||+.+.+..... .......+
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~--------------------------~~~~~~~~ 60 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK--------------------------DKSYSHFV 60 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG--------------------------GGEEEEEC
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCC--------------------------CcceEEec
Confidence 446788999999999998 69999999999999999877611000 00011224
Q ss_pred ccCCeeEEEEcCC----C---CEEEEEeCCCCEEEEEcCCCee-----eEEeecC-----CCceeEEEEc----CCC-E-
Q 012007 234 HYDAVSCLSLNAE----Q---GLLYSGSWDKTLKVWRISDCKC-----LESINAH-----DDAINSVVAG----FDS-L- 290 (473)
Q Consensus 234 ~~~~v~~l~~~~~----~---~~l~s~s~dg~v~vwd~~~~~~-----~~~~~~~-----~~~v~~l~~~----~~~-~- 290 (473)
|...|.+++|+|+ + .+|++++.|+.|++||+.+++. +..+..| ...|.+++|+ +++ .
T Consensus 61 h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 140 (397)
T 1sq9_A 61 HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 140 (397)
T ss_dssp CTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEE
T ss_pred CCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceE
Confidence 9999999999999 9 9999999999999999998887 8888888 5899999999 877 7
Q ss_pred EEEEeCCCcEEEEeCcc------cCCCcceeeeeee-------ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc
Q 012007 291 VFTGSADGTVKVWRREL------QGKGTKHCLAQVL-------LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 357 (473)
|++++.||.|++||++. ..... ......+ ..|...|.+++|+|++ +|++++.||.|++||+++..
T Consensus 141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 218 (397)
T 1sq9_A 141 LVATDVKGTTYIWKFHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR 218 (397)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred EEEEeCCCcEEEEeCCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc
Confidence 99999999999999985 32211 1111133 4588999999999999 99999999999999998754
Q ss_pred cccceeec---C---cceEEEEEe--cCCEEEEEeCC---CcEEEEecCCCCceeEEEEecC-------------CCCce
Q 012007 358 SHGGVLRG---H---KMAVLCLAA--AGNLVFSGSAD---RNICLWRREESGAHSCLAVLTG-------------HTGPV 413 (473)
Q Consensus 358 ~~~~~~~~---~---~~~v~~~~~--~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~-------------h~~~V 413 (473)
.. ..+.. | ...+.++.+ ++++|++++.| +.|++||+.+ .+++..+.+ |...|
T Consensus 219 ~~-~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v 294 (397)
T 1sq9_A 219 PL-YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF---GERIGSLSVPTHSSQASLGEFAHSSWV 294 (397)
T ss_dssp EE-EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT---CCEEEEECBC--------CCBSBSSCE
T ss_pred ee-EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC---CcccceeccCcccccccccccccCCcE
Confidence 33 45556 7 777776664 69999999999 9999999988 467777887 99999
Q ss_pred eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 414 KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
.+++|+|++. +|++++.||.|++||+..++.
T Consensus 295 ~~~~~~~~~~-------------~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 295 MSLSFNDSGE-------------TLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp EEEEECSSSS-------------EEEEEETTSEEEEEETTTTEE
T ss_pred EEEEECCCCC-------------EEEEEeCCCeEEEEEcCCCce
Confidence 9999999998 899999999999999987654
No 93
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-32 Score=251.19 Aligned_cols=244 Identities=23% Similarity=0.325 Sum_probs=205.0
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+....+.+|.+.|.+++| +++++|++|+.||.|++||+.+........
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~------------------------------- 56 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY------------------------------- 56 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE-------------------------------
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee-------------------------------
Confidence 456678899999999999 899999999999999999997765433222
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC---eeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCccc
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC---KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~---~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~ 308 (473)
.|...|.+++|+|++++|++++.|+.|++|++... +.+..+..|...|.++.+ .++.+++++.||.|++||..
T Consensus 57 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d~~-- 132 (313)
T 3odt_A 57 -TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWKEG-- 132 (313)
T ss_dssp -ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETT--
T ss_pred -cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEcCC--
Confidence 38899999999999999999999999999998654 667788899999999999 45599999999999999932
Q ss_pred CCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeec-CcceEEEEE--ecCCEEEEEe
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-HKMAVLCLA--AAGNLVFSGS 384 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~--~~~~~l~s~~ 384 (473)
.....+..|...+.+++|.| ++.++++++.||.|++||.... . ..+.. |...+.++. +++. +++++
T Consensus 133 ------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~-~~~~~~~~~~i~~~~~~~~~~-~~~~~ 202 (313)
T 3odt_A 133 ------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV--I-KTFSGIHNDVVRHLAVVDDGH-FISCS 202 (313)
T ss_dssp ------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE--E-EEECSSCSSCEEEEEEEETTE-EEEEE
T ss_pred ------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce--E-EEEeccCcccEEEEEEcCCCe-EEEcc
Confidence 23456678999999999998 8999999999999999995432 2 23333 777776655 4566 99999
Q ss_pred CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.||.|++||+.+ .+++..+.+|...|++++|+|++. |++++.||.|++||+.+++..
T Consensus 203 ~dg~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~--------------l~~~~~dg~v~iwd~~~~~~~ 259 (313)
T 3odt_A 203 NDGLIKLVDMHT---GDVLRTYEGHESFVYCIKLLPNGD--------------IVSCGEDRTVRIWSKENGSLK 259 (313)
T ss_dssp TTSEEEEEETTT---CCEEEEEECCSSCEEEEEECTTSC--------------EEEEETTSEEEEECTTTCCEE
T ss_pred CCCeEEEEECCc---hhhhhhhhcCCceEEEEEEecCCC--------------EEEEecCCEEEEEECCCCcee
Confidence 999999999998 577888889999999999999984 889999999999999887543
No 94
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=261.03 Aligned_cols=253 Identities=18% Similarity=0.240 Sum_probs=202.2
Q ss_pred ccccCcccEEEEEEeCCCCEEE-EEeC---CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 156 GFKSNSGLVKAIIISGDSNKIF-TGHQ---DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~-s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
.+.+|...|.+++|+|++..++ +|+. ||.|++||+.+++......
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~------------------------------- 61 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE------------------------------- 61 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE-------------------------------
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee-------------------------------
Confidence 4567999999999999996555 5555 8999999998876543322
Q ss_pred eeccCCeeEEEEcCC---CCEEEEEeCCCCEEEEEcCCCe-eeEEeecCCCceeEEEE------cCCC-EEEEEeCCCcE
Q 012007 232 IRHYDAVSCLSLNAE---QGLLYSGSWDKTLKVWRISDCK-CLESINAHDDAINSVVA------GFDS-LVFTGSADGTV 300 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~---~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~~~v~~l~~------~~~~-~l~s~~~dg~i 300 (473)
.+|...|.+++|+|+ +.+|++|+.||.|++||+.+++ .+..+..|...|.++.| ++++ +|++++.||.|
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 248999999999998 6999999999999999999988 88899999999999965 4565 89999999999
Q ss_pred EEEeCcccCCCcceeeeeeeccC----CccEEEEE----EccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE
Q 012007 301 KVWRRELQGKGTKHCLAQVLLKH----ENAVTALA----VNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~~~----~~~v~~l~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
++||++... .....+..| ...+.+++ |+|++.+|++++.||.|++||+++.... ....|...+.+
T Consensus 142 ~vwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~v~~ 214 (357)
T 3i2n_A 142 KVWDPRQKD-----DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR--WETNIKNGVCS 214 (357)
T ss_dssp EEECTTSCS-----SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE--EEEECSSCEEE
T ss_pred EEEeCCCCC-----CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee--eecCCCCceEE
Confidence 999997433 123333333 33789998 7889999999999999999999886543 34567777777
Q ss_pred EEe-----cCCEEEEEeCCCcEEEEecCCCCceeE--EEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCC
Q 012007 373 LAA-----AGNLVFSGSADRNICLWRREESGAHSC--LAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDK 445 (473)
Q Consensus 373 ~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg 445 (473)
+.+ ++.+|++|+.||.|++||+.+...... ...+.+|...|++++|+|++.. +|++++.||
T Consensus 215 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------~l~~~~~dg 282 (357)
T 3i2n_A 215 LEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRE------------LFLTAGGAG 282 (357)
T ss_dssp EEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEE------------EEEEEETTS
T ss_pred EEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCc------------EEEEEeCCC
Confidence 665 679999999999999999987322222 2244589999999999998763 799999999
Q ss_pred cEEEEEcCCCCCC
Q 012007 446 SVKVWRVSEHAPD 458 (473)
Q Consensus 446 ~v~iW~i~~~~~~ 458 (473)
.|++|++..+...
T Consensus 283 ~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 283 GLHLWKYEYPIQR 295 (357)
T ss_dssp EEEEEEEECCSCC
T ss_pred cEEEeecCCCccc
Confidence 9999999876543
No 95
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.5e-32 Score=258.23 Aligned_cols=243 Identities=14% Similarity=0.128 Sum_probs=193.6
Q ss_pred eeeeecccEEEEEecCCEEEEee-----------CCCcEEEeeCCcc-----------ccccccCcccEEEEEEeCCCCE
Q 012007 118 SIVRKEGHIYSLAASGDLLYTGS-----------DSKNIRVWKNLKE-----------FSGFKSNSGLVKAIIISGDSNK 175 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~g~~l~tg~-----------~dg~i~vwd~~~~-----------~~~~~~h~~~V~~l~~s~~~~~ 175 (473)
.|.+|+..|.+++++++.+++|. .|+.+|+|+.... ......+...+.+++|+|||++
T Consensus 68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~ 147 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV 147 (365)
T ss_dssp ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence 46678889999999999988874 4678999974311 1112334567999999999999
Q ss_pred EEEEe--CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE
Q 012007 176 IFTGH--QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG 253 (473)
Q Consensus 176 l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 253 (473)
|++++ .|++|+|||+.+++..... .|...|.+++|+|+|++|+++
T Consensus 148 la~as~~~d~~i~iwd~~~~~~~~~~---------------------------------~~~~~V~~v~fspdg~~l~s~ 194 (365)
T 4h5i_A 148 AAIASSKVPAIMRIIDPSDLTEKFEI---------------------------------ETRGEVKDLHFSTDGKVVAYI 194 (365)
T ss_dssp EEEEESCSSCEEEEEETTTTEEEEEE---------------------------------ECSSCCCEEEECTTSSEEEEE
T ss_pred EEEEECCCCCEEEEeECCCCcEEEEe---------------------------------CCCCceEEEEEccCCceEEec
Confidence 87654 6899999999987654333 378889999999999999999
Q ss_pred eCCCCEEEEEcCCCeeeEE--eecCCCceeEEEEcCCC-EEEEEeCCC----cEEEEeCcccCCCcceeeeeeeccCCcc
Q 012007 254 SWDKTLKVWRISDCKCLES--INAHDDAINSVVAGFDS-LVFTGSADG----TVKVWRRELQGKGTKHCLAQVLLKHENA 326 (473)
Q Consensus 254 s~dg~v~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~-~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
+. +.+++|+..+++.+.. ...|...|.+++|+|++ .+++++.|+ .+++|++.... ........+..|...
T Consensus 195 s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~ 271 (365)
T 4h5i_A 195 TG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN--TSVLRSKQVTNRFKG 271 (365)
T ss_dssp CS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE--EEEEEEEEEESSCSC
T ss_pred cc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce--ecceeeeeecCCCCC
Confidence 85 5677888777766543 45688899999999998 788888777 57888875322 122234567789999
Q ss_pred EEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCC
Q 012007 327 VTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 327 v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
|++++|+|+|++||+|+.|+.|+|||++++......+.+|...|.+++ |||++|++|+.|++|+||++..
T Consensus 272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999999999999999999987766666789999987765 5799999999999999999964
No 96
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.6e-32 Score=264.95 Aligned_cols=257 Identities=14% Similarity=0.214 Sum_probs=195.8
Q ss_pred ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc--
Q 012007 158 KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY-- 235 (473)
Q Consensus 158 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 235 (473)
..|.+.|.+++|+|+|++|++|+.||.|+|||+.+........... ........+|.
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~---------------------~~~~~~~~~h~~~ 83 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE---------------------YNVYSTFQSHEPE 83 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCC---------------------EEEEEEEECCCCE
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccc---------------------eeEeccccccccc
Confidence 3467899999999999999999999999999998765210000000 00001122365
Q ss_pred ----------CCeeEEEEcCCC--CEEEEEeCCCCEEEEEcCCCeee---------------------------------
Q 012007 236 ----------DAVSCLSLNAEQ--GLLYSGSWDKTLKVWRISDCKCL--------------------------------- 270 (473)
Q Consensus 236 ----------~~v~~l~~~~~~--~~l~s~s~dg~v~vwd~~~~~~~--------------------------------- 270 (473)
..|.+++|+|++ .+|++++.|++|++||+.+++..
T Consensus 84 ~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 163 (447)
T 3dw8_B 84 FDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLM 163 (447)
T ss_dssp EEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEE
T ss_pred ccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchhee
Confidence 889999999998 79999999999999999765432
Q ss_pred ------EE-eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeee-------eeccCCccEEEEEEccC
Q 012007 271 ------ES-INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQ-------VLLKHENAVTALAVNQE 335 (473)
Q Consensus 271 ------~~-~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~~~~ 335 (473)
.. ..+|...|.+++|+|++ +|++| .|+.|++||++... .... .+..|...|++++|+|+
T Consensus 164 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 237 (447)
T 3dw8_B 164 VEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITD-----RSFNIVDIKPANMEELTEVITAAEFHPN 237 (447)
T ss_dssp EEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEE-----EEEEEEECCCSSGGGCCCCEEEEEECSS
T ss_pred eeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCC-----ceeeeeecccccccccCcceEEEEECCC
Confidence 12 35799999999999998 77777 89999999997321 1111 36689999999999999
Q ss_pred C-CEEEEeCCCCcEEEEecCCcccc---cceeecCcc------------eEEEEE--ecCCEEEEEeCCCcEEEEecCCC
Q 012007 336 S-AVVYCGSSDGLVNFWECEKHLSH---GGVLRGHKM------------AVLCLA--AAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 336 ~-~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~------------~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
+ .+|++++.||.|++||+++.... ...+.+|.. .+.++. +++++|++++. +.|++||+...
T Consensus 238 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~ 316 (447)
T 3dw8_B 238 SCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME 316 (447)
T ss_dssp CTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC
T ss_pred CCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC
Confidence 8 99999999999999999876541 355666654 666655 56999999998 99999999862
Q ss_pred CceeEEEEecCCCCc---------------eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 398 GAHSCLAVLTGHTGP---------------VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 398 ~~~~~~~~~~~h~~~---------------V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
..++..+.+|... +..++|+|++. +|++|+.||.|++||+..++.
T Consensus 317 --~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-------------~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 317 --NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-------------VVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp --SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-------------EEEEECSTTEEEEEETTTCCE
T ss_pred --ccccceeeccccccccccccccccccccceEEEECCCCC-------------EEEEeccCCEEEEEEcCCCcc
Confidence 3456666777542 23499999998 899999999999999987653
No 97
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.4e-32 Score=256.03 Aligned_cols=257 Identities=14% Similarity=0.171 Sum_probs=204.2
Q ss_pred ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
...+|.+.|.+++|+|++++|++++.||.|++|++..+...... ....+|.
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~-----------------------------~~~~~~~ 56 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-----------------------------LQSLRYK 56 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE-----------------------------EEEEECS
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc-----------------------------eeeeecC
Confidence 34579999999999999999999999999999999876521111 1112499
Q ss_pred CCeeEEEEcCCCC-EEEEEeCCCCEEEEEc-CCCeeeEEeec--CCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCC
Q 012007 236 DAVSCLSLNAEQG-LLYSGSWDKTLKVWRI-SDCKCLESINA--HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 236 ~~v~~l~~~~~~~-~l~s~s~dg~v~vwd~-~~~~~~~~~~~--~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
..|.+++|+|+++ +|++|+.||.|++||+ .+++. ..+.. |...|.+++|++...+++++.|+.|++||++.....
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc
Confidence 9999999999999 9999999999999999 77755 67778 999999999999559999999999999998741100
Q ss_pred cc---eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC-ccc-ccceeecCcceEEEEE--e-cCCEEEEE
Q 012007 312 TK---HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK-HLS-HGGVLRGHKMAVLCLA--A-AGNLVFSG 383 (473)
Q Consensus 312 ~~---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~v~~~~--~-~~~~l~s~ 383 (473)
.. ......+. |...|.+++|++++ +++++.|+.|++||+++ ... .......|...+.++. + ++++|+++
T Consensus 136 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 136 VIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp CEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred cccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE
Confidence 00 11222333 88999999999987 88999999999999987 443 2234445666676655 5 78999999
Q ss_pred eCCCcEEEEecCCCC---ceeEEEEecCCCC---------ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 384 SADRNICLWRREESG---AHSCLAVLTGHTG---------PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 384 ~~dg~i~iwd~~~~~---~~~~~~~~~~h~~---------~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+.||.|++|+++..+ .......+.+|.. .|++++|+|++. +|++++.||.|++||
T Consensus 213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-------------~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-------------FLYTAGSDGIISCWN 279 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-------------CEEEEETTSCEEEEE
T ss_pred ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC-------------EEEEecCCceEEEEc
Confidence 999999999998741 0144556666654 999999999998 899999999999999
Q ss_pred cCCCCCC
Q 012007 452 VSEHAPD 458 (473)
Q Consensus 452 i~~~~~~ 458 (473)
+.+++..
T Consensus 280 ~~~~~~~ 286 (342)
T 1yfq_A 280 LQTRKKI 286 (342)
T ss_dssp TTTTEEE
T ss_pred CccHhHh
Confidence 9877643
No 98
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=285.78 Aligned_cols=254 Identities=19% Similarity=0.241 Sum_probs=209.0
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.......... ..+|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~------------------------------l~~h 52 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT------------------------------LTGH 52 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEE------------------------------ECCC
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcccee------------------------------ccCC
Confidence 4578899999999999999999999999999999987543222211 1249
Q ss_pred cCCeeEEEEcCC--CCEEEEEeCCCCEEEEEcCCCe--eeEEeecCCCceeEEEEcCC--C-EEEEEeCCCcEEEEeCcc
Q 012007 235 YDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISDCK--CLESINAHDDAINSVVAGFD--S-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 235 ~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~-~l~s~~~dg~i~vwd~~~ 307 (473)
...|.+++|+++ +++|++|+.||.|++||+.+++ .+..+..|...|.++.|+|+ + .+++|+.||.|++||++.
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 132 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence 999999999987 9999999999999999999987 77788899999999999997 5 999999999999999975
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEcc-------------CCCEEEEeCCCCcEEEEecCCcc---cccceeecCcceEE
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQ-------------ESAVVYCGSSDGLVNFWECEKHL---SHGGVLRGHKMAVL 371 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~ 371 (473)
... ........|...|.+++|+| ++.+|++|+.||.|++||+++.. .....+.+|...|.
T Consensus 133 ~~~----~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 208 (753)
T 3jro_A 133 NGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (753)
T ss_dssp SSC----CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred CCC----cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEE
Confidence 422 22345678999999999999 58999999999999999998653 33345678888887
Q ss_pred EEEe--c---CCEEEEEeCCCcEEEEecCCCCce--eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC
Q 012007 372 CLAA--A---GNLVFSGSADRNICLWRREESGAH--SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD 444 (473)
Q Consensus 372 ~~~~--~---~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D 444 (473)
++.+ + +.+|++|+.||.|++||+.++... ..+.....|...|++++|+|++. +|++|+.|
T Consensus 209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-------------~l~s~s~D 275 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-------------VLALSGGD 275 (753)
T ss_dssp EEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC-------------CEEEECSS
T ss_pred EEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC-------------EEEEEcCC
Confidence 7765 5 789999999999999999874211 13334456889999999999998 79999999
Q ss_pred CcEEEEEcCCC
Q 012007 445 KSVKVWRVSEH 455 (473)
Q Consensus 445 g~v~iW~i~~~ 455 (473)
|.|++|++...
T Consensus 276 g~I~vwd~~~~ 286 (753)
T 3jro_A 276 NKVTLWKENLE 286 (753)
T ss_dssp SCEECCBCCSS
T ss_pred CEEEEEecCCC
Confidence 99999999854
No 99
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.2e-32 Score=256.21 Aligned_cols=292 Identities=12% Similarity=0.093 Sum_probs=209.9
Q ss_pred eeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEE-EEEeCCCeEEEEeCCC
Q 012007 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKI-FTGHQDGKIRIWKVSR 192 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~vwd~~~ 192 (473)
+..+.+|.+.|.++++ +|++|++|+.|| ++||+..........+...+..+++.++++++ ++++.|+.|++||+.+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 3455778888888876 488999998775 78999764433333333458889999988887 5677889999999988
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-eeeE
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLE 271 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~-~~~~ 271 (473)
++...... +...|.+++|+++. ++++. |+.|++||+.++ +.+.
T Consensus 91 ~~~~~~~~---------------------------------~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 91 KQDVSRIK---------------------------------VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPWKRIT 134 (355)
T ss_dssp TEEEEEEE---------------------------------CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTCCBSS
T ss_pred CcEEEEEE---------------------------------CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCceeeE
Confidence 86544332 66789999998753 44444 789999999988 7776
Q ss_pred EeecCCCceeEEEEcCCCEEEE--EeCCCcEEEEeCcccCCC---------cceee-eeeeccCCccEEEEEEccCCCEE
Q 012007 272 SINAHDDAINSVVAGFDSLVFT--GSADGTVKVWRRELQGKG---------TKHCL-AQVLLKHENAVTALAVNQESAVV 339 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~~l~s--~~~dg~i~vwd~~~~~~~---------~~~~~-~~~~~~~~~~v~~l~~~~~~~~l 339 (473)
.+.. ....+++++ ..++. |+.||.|++||++..... ....+ ...+.+|...|++++|+|++++|
T Consensus 135 ~~~~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l 210 (355)
T 3vu4_A 135 DDIR---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV 210 (355)
T ss_dssp CCEE---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred Eecc---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Confidence 6654 334445556 55554 689999999999753210 00011 56778999999999999999999
Q ss_pred EEeCCCCc-EEEEecCCcccccceeec-CcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEe---------
Q 012007 340 YCGSSDGL-VNFWECEKHLSHGGVLRG-HKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVL--------- 406 (473)
Q Consensus 340 ~~~~~dg~-i~iwd~~~~~~~~~~~~~-~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------- 406 (473)
++++.|++ |++||++++........+ |...|.+++ +++++|++++.|++|++||+....... ...+
T Consensus 211 ~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~ 289 (355)
T 3vu4_A 211 ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK-RHALKGWINMKYF 289 (355)
T ss_dssp EEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC-SEETTTTEECCCC
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc-cccccceeecccc
Confidence 99999998 999999987655444335 888887766 569999999999999999997632111 1111
Q ss_pred ------------cCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 407 ------------TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 407 ------------~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
..+......++|++++. +|++++.||.+++|++..+......+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~a~~~d~~-------------~l~~~~~dg~~~~~~~~~~~~~~~~~ 344 (355)
T 3vu4_A 290 QSEWSLCNFKLSVDKHVRGCKIAWISESS-------------LVVVWPHTRMIETFKVVFDDEMERWL 344 (355)
T ss_dssp CCSSCSEEEECCCCTTCCCCEEEESSSSE-------------EEEEETTTTEEEEEEEEEETTTTEEE
T ss_pred ccccceeEEEeccCCCCCceEEEEeCCCC-------------EEEEEeCCCeEEEEEEEcCCCCceEE
Confidence 11223347799999998 89999999999999998776544433
No 100
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-32 Score=256.02 Aligned_cols=272 Identities=8% Similarity=0.022 Sum_probs=199.2
Q ss_pred EecCCEEEEeeCCCcEEEeeCCcc--ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccc
Q 012007 130 AASGDLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 130 ~~~g~~l~tg~~dg~i~vwd~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
..++.+|++|+.||+|++||.... +..+. ...|.++.|+|+ +++++.|+.|++|+........ ....
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~--~~~~---- 113 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL--DSKT---- 113 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE--ETTT----
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe--ecCC----
Confidence 356889999999999999997533 33333 577888889888 9999999999999886421110 0000
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEE
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVV 284 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~ 284 (473)
... ......+|.+.|.+++|+| ++++|++|+.||+|++||+++++.+.... .+...+.+++
T Consensus 114 ----------~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~ 177 (343)
T 3lrv_A 114 ----------NKV------LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGV 177 (343)
T ss_dssp ----------CCE------EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEE
T ss_pred ----------cce------eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEE
Confidence 000 0011124778899999999 99999999999999999999999877664 4556899999
Q ss_pred EcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeecc-CCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce
Q 012007 285 AGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK-HENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362 (473)
Q Consensus 285 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 362 (473)
|+|++ +|++|+.||.|++||++.... ....+.. |...|++++|+|++.+|++++ |+.|++||+++.......
T Consensus 178 ~~pdg~~lasg~~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 178 LHKDSLLLALYSPDGILDVYNLSSPDQ-----ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY 251 (343)
T ss_dssp ECTTSCEEEEECTTSCEEEEESSCTTS-----CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCCC-----CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee
Confidence 99998 888999999999999985432 2134455 999999999999999999999 559999999876443211
Q ss_pred --eecCcce----EEEEEecCCEEEEEeC-CCcEEEEecCCCCceeEEEEecCCCCceeEEEEec---CCCCCcccccCC
Q 012007 363 --LRGHKMA----VLCLAAAGNLVFSGSA-DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE---DRDHDHEYHQKG 432 (473)
Q Consensus 363 --~~~~~~~----v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~~~~~~~~~ 432 (473)
+..|... ..++++++++|++++. |+.|++|++...... ... .++..++|.+ +..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~--------- 315 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--WTK-----DEESALCLQSDTADFT--------- 315 (343)
T ss_dssp CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--EEE-----EEEEECCC----CCCC---------
T ss_pred cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--eEe-----cCceeEecCccccccc---------
Confidence 1112222 4667778999999998 999999999763221 111 5677888888 555
Q ss_pred CccEEEEEeeCCCcEEEEEcCC
Q 012007 433 DQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 433 ~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.+++++.||.+.++-...
T Consensus 316 ----~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 316 ----DMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp ----EEEEEEETTEEEEEEECS
T ss_pred ----eeEEEecCCceEEEEecC
Confidence 688888899888876443
No 101
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1e-31 Score=261.21 Aligned_cols=264 Identities=18% Similarity=0.252 Sum_probs=211.9
Q ss_pred cccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 155 SGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
.....|.+.|++++|+|+ +.+|++++.||.|++|++.......... . .........+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~-~---------------------~~~~~~~~~~ 179 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS-G---------------------ECQPDLRLRG 179 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT-C---------------------CCCCSEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcc-c---------------------cCCCcEEecC
Confidence 345679999999999997 6899999999999999997631110000 0 0001112235
Q ss_pred ccCCeeEEEEcCCCC-EEEEEeCCCCEEEEEcCCCee-------eEEeecCCCceeEEEEcCC-C-EEEEEeCCCcEEEE
Q 012007 234 HYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKC-------LESINAHDDAINSVVAGFD-S-LVFTGSADGTVKVW 303 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~-~l~s~s~dg~v~vwd~~~~~~-------~~~~~~~~~~v~~l~~~~~-~-~l~s~~~dg~i~vw 303 (473)
|...|.+++|+|++. +|++|+.||.|++||+..+.. ...+..|...|.+++|+|+ + +|++++.||.|++|
T Consensus 180 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp CSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence 999999999999988 999999999999999987322 4566789999999999984 3 88999999999999
Q ss_pred eCcccCCCcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec--C-CE
Q 012007 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--G-NL 379 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~-~~ 379 (473)
|++.... ......+..|...|++++|+|++. +|++|+.||.|++||++........+.+|...+.++.+. + .+
T Consensus 260 d~~~~~~---~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 260 DTRNNNT---SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp ETTCSCS---SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred ECCCCCC---CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCE
Confidence 9985421 123445568999999999999886 788999999999999998666667788899889877764 5 57
Q ss_pred EEEEeCCCcEEEEecCCCCc-----------eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEE
Q 012007 380 VFSGSADRNICLWRREESGA-----------HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVK 448 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~ 448 (473)
|++++.|+.|+|||+..... ..++..+.+|...|++++|+|++.. +|++++.||.|+
T Consensus 337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~------------~l~s~s~dg~i~ 404 (430)
T 2xyi_A 337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW------------IICSVSEDNIMQ 404 (430)
T ss_dssp EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT------------EEEEEETTSEEE
T ss_pred EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC------------EEEEEECCCCEE
Confidence 99999999999999986321 2677888899999999999999874 799999999999
Q ss_pred EEEcCCC
Q 012007 449 VWRVSEH 455 (473)
Q Consensus 449 iW~i~~~ 455 (473)
||++...
T Consensus 405 iw~~~~~ 411 (430)
T 2xyi_A 405 VWQMAEN 411 (430)
T ss_dssp EEEECHH
T ss_pred EeEcccc
Confidence 9999753
No 102
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-31 Score=261.87 Aligned_cols=247 Identities=13% Similarity=0.098 Sum_probs=194.2
Q ss_pred CcccEEEEEEeCCCCEE-EEEeCCCeEEEEeCC--CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 160 NSGLVKAIIISGDSNKI-FTGHQDGKIRIWKVS--RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
|.+.|.+++|+|++++| ++|+.||.|++||+. +++....... ..|..
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------------------~~~~~ 150 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR------------------------------FCFSK 150 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE------------------------------EECSS
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec------------------------------ccCCC
Confidence 44579999999999996 899999999999998 5554333221 13778
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE----EeecCCCceeEEEEcCC---C-EEEEEeCCCcEEEEeCccc
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE----SINAHDDAINSVVAGFD---S-LVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~----~~~~~~~~v~~l~~~~~---~-~l~s~~~dg~i~vwd~~~~ 308 (473)
.|.+++|+|++++|++|+.||.|++|++.+++... .+.+|...|.+++|+|+ + +|++++.|+.|++||++..
T Consensus 151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 99999999999999999999999999998877554 77889999999999998 7 8999999999999998733
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee------------------------
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR------------------------ 364 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------------ 364 (473)
. .......+|...|.+++|+ ++.+|++++.|+.|++||++++........
T Consensus 231 ~-----~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 231 F-----IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp T-----CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred c-----eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 2 2333356899999999999 999999999999999999987654322211
Q ss_pred cCcceEEE--EEecCCEEEEEe-CCCcEEEEec--CCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEE
Q 012007 365 GHKMAVLC--LAAAGNLVFSGS-ADRNICLWRR--EESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439 (473)
Q Consensus 365 ~~~~~v~~--~~~~~~~l~s~~-~dg~i~iwd~--~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~ 439 (473)
.....+.+ +.+++++|++++ .|+.|++|++ ........+..+.+| +.|.+++|+|++. +++
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~-------------~v~ 370 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEF-------------QVT 370 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEE-------------EEE
T ss_pred cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcE-------------EEE
Confidence 11233444 445699999998 8999999999 553445777888888 8899999999642 344
Q ss_pred EeeC------CCcEEEEEcCCCC
Q 012007 440 SGSL------DKSVKVWRVSEHA 456 (473)
Q Consensus 440 s~s~------Dg~v~iW~i~~~~ 456 (473)
.++. +..|.+|.+....
T Consensus 371 ~~~~~~~~~~~~~i~v~~~~~~~ 393 (450)
T 2vdu_B 371 LDNKESSGVQKNFAKFIEYNLNE 393 (450)
T ss_dssp ECCTTCCSSCCCSEEEEEEETTT
T ss_pred EecccCCCCCCcceEEEEEEcCC
Confidence 4343 5568999887543
No 103
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.3e-31 Score=257.32 Aligned_cols=240 Identities=28% Similarity=0.492 Sum_probs=208.6
Q ss_pred ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
...+|...|.++.+ ++++|++|+.||.|++||+.+++...... +|.
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------------------------------~h~ 173 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT--------------------------------GHT 173 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC--------------------------------CCS
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEc--------------------------------CCC
Confidence 34457778999887 78899999999999999998876543322 499
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCccee
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
..|.+++| ++++|++|+.||.|++||+.+++.+..+..|...|.++.+++ +.+++|+.||.|++||++... ...
T Consensus 174 ~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~---~~~ 247 (435)
T 1p22_A 174 GSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPT---DIT 247 (435)
T ss_dssp SCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSS---CCE
T ss_pred CcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCC---Cce
Confidence 99999998 788999999999999999999999999999999999999974 599999999999999997533 222
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecC
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
....+.+|...|.+++| ++++|++++.||.|++||+++... ...+.+|...+.++.+++++|++|+.||.|++||+.
T Consensus 248 ~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 248 LRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred eeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE-EEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 33567789999999999 678999999999999999988644 456778999999999999999999999999999999
Q ss_pred CCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 396 ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 396 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+ ..++..+.+|...|.+++| ++. +|++|+.||.|++||+..+.
T Consensus 325 ~---~~~~~~~~~h~~~v~~~~~--~~~-------------~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 325 C---GACLRVLEGHEELVRCIRF--DNK-------------RIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp T---CCEEEEECCCSSCEEEEEC--CSS-------------EEEEEETTSCEEEEEHHHHT
T ss_pred C---CCEEEEEeCCcCcEEEEEe--cCC-------------EEEEEeCCCcEEEEECCCCC
Confidence 8 5788889999999999999 444 89999999999999997654
No 104
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=283.14 Aligned_cols=249 Identities=20% Similarity=0.215 Sum_probs=202.7
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCC--CCEEEEEeCCCeEEE
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGD--SNKIFTGHQDGKIRI 187 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~v 187 (473)
+..+.+|.+.|.+++++ |++|++|+.||.|+|||.. +....+.+|.+.|.+++|+++ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45788999999999865 8899999999999999864 446678899999999999988 999999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC--CCEEEEEeCCCCEEEEEcC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd~~ 265 (473)
||+.++........ .+|...|.+++|+|+ +.+|++|+.||.|++||+.
T Consensus 82 wd~~~~~~~~~~~~------------------------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 82 WKEENGRWSQIAVH------------------------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEEETTEEEEEEEE------------------------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EECCCCcccccccc------------------------------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 99987653222221 148999999999999 9999999999999999998
Q ss_pred CC--eeeEEeecCCCceeEEEEcCC-------------C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEE
Q 012007 266 DC--KCLESINAHDDAINSVVAGFD-------------S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 266 ~~--~~~~~~~~~~~~v~~l~~~~~-------------~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (473)
++ .....+..|...|.++.|+|. + .+++|+.||.|++||++... ........+..|...|++
T Consensus 132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--QTYVLESTLEGHSDWVRD 209 (753)
T ss_dssp SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--TEEEEEEEECCCSSCEEE
T ss_pred cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--ccceeeeeecCCCCcEEE
Confidence 77 344566789999999999993 4 89999999999999997543 233455677889999999
Q ss_pred EEEccC---CCEEEEeCCCCcEEEEecCCccc----ccceeecCcceEE--EEEecCCEEEEEeCCCcEEEEecCC
Q 012007 330 LAVNQE---SAVVYCGSSDGLVNFWECEKHLS----HGGVLRGHKMAVL--CLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 330 l~~~~~---~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~--~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
++|+|+ +.+|++++.||.|++||+++... .......|...+. ++++++++|++|+.||.|++|++..
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 999999 89999999999999999987531 1222334666665 5556799999999999999999985
No 105
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.9e-32 Score=257.94 Aligned_cols=251 Identities=12% Similarity=0.133 Sum_probs=197.2
Q ss_pred ccccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 154 FSGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
...+.+|.+.|.+++|+|++ ++|++|+.||.|++||+.+++....... .
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------~ 115 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG------------------------------M 115 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC------------------------------C
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec------------------------------C
Confidence 44667899999999999999 9999999999999999997765433321 1
Q ss_pred eccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeec---CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcc
Q 012007 233 RHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINA---HDDAINSVVAGFDS-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 233 ~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~ 307 (473)
+|...|.+++|+| ++++|++++.|+.|++||+.. +.+..+.. |...|.+++|++++ +|++++.|+.|++||++.
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 194 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG 194 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC
Confidence 3899999999999 789999999999999999986 55555544 34789999999987 999999999999999841
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEEEEecCCcccc--cceeecCcceEEEEE--e-cCCEEE
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVNFWECEKHLSH--GGVLRGHKMAVLCLA--A-AGNLVF 381 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~--~-~~~~l~ 381 (473)
.....+..|...|.+++|+|++. +|++++.|+.|++||+++.... .....+|...+.++. + ++++|+
T Consensus 195 -------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 267 (383)
T 3ei3_B 195 -------HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL 267 (383)
T ss_dssp -------CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEE
T ss_pred -------CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEE
Confidence 13456678999999999999998 9999999999999999863211 112236888887766 4 679999
Q ss_pred EEeCCCcEEEEecCCCCceeEEEEe----cCCCCce----------eEEEEecCCCCCcccccCCCccEEEEEeeCCCcE
Q 012007 382 SGSADRNICLWRREESGAHSCLAVL----TGHTGPV----------KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSV 447 (473)
Q Consensus 382 s~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~V----------~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v 447 (473)
+++.|+.|++||+.+......+... ..|...+ ..++|+|++. + +|+.||.|
T Consensus 268 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-------------~--s~s~d~~i 332 (383)
T 3ei3_B 268 TTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-------------L--LLNDKRTI 332 (383)
T ss_dssp EEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT-------------T--CTTCCCCE
T ss_pred EEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc-------------c--ccCCCCeE
Confidence 9999999999999875432222211 1233333 3455555554 3 78899999
Q ss_pred EEEEcCCCCC
Q 012007 448 KVWRVSEHAP 457 (473)
Q Consensus 448 ~iW~i~~~~~ 457 (473)
+|||+.+++.
T Consensus 333 ~iwd~~~~~~ 342 (383)
T 3ei3_B 333 DIYDANSGGL 342 (383)
T ss_dssp EEEETTTCCE
T ss_pred EEEecCCCce
Confidence 9999988764
No 106
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.3e-31 Score=252.46 Aligned_cols=236 Identities=18% Similarity=0.262 Sum_probs=196.5
Q ss_pred ecccEEEEEe--cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeee
Q 012007 122 KEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASV 197 (473)
Q Consensus 122 h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 197 (473)
|.+.|.++++ ++++|++|+.||.|++||.. +.+..+.+|...|.+++|+ +++|++|+.||.|++||+.......
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~ 210 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQI 210 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCccee
Confidence 7888998887 58899999999999999965 5567788999999999995 5699999999999999998543222
Q ss_pred EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCC
Q 012007 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD 277 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 277 (473)
.. ..+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|.
T Consensus 211 ~~-------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 259 (401)
T 4aez_A 211 GT-------------------------------LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN 259 (401)
T ss_dssp EE-------------------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS
T ss_pred eE-------------------------------EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc
Confidence 11 12489999999999999999999999999999999999999999999
Q ss_pred CceeEEEEcCCC--EEEEEe--CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE--eCCCCcEEEE
Q 012007 278 DAINSVVAGFDS--LVFTGS--ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC--GSSDGLVNFW 351 (473)
Q Consensus 278 ~~v~~l~~~~~~--~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~~~dg~i~iw 351 (473)
..|.+++|+|++ ++++++ .|+.|++||++.+. ....+ .+...|.+++|+|++++|++ |+.||.|++|
T Consensus 260 ~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~------~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA------RVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC------EEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEE
T ss_pred ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC------EEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEE
Confidence 999999999976 666765 79999999997432 12222 46778999999999999999 6689999999
Q ss_pred ecCCcccc-cceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCC
Q 012007 352 ECEKHLSH-GGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 352 d~~~~~~~-~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
|+.+.... ...+.+|...+.++. +++.+|++++.||.|++|++.++
T Consensus 333 ~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred ecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 99874332 234567888776555 56999999999999999999884
No 107
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.1e-31 Score=259.42 Aligned_cols=263 Identities=14% Similarity=0.132 Sum_probs=193.8
Q ss_pred cccccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 155 SGFKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
....+|...|+||+|+| ++++||+|+.||.|+|||+.+++....... .+
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~------------------------------~g 162 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG------------------------------IG 162 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC------------------------------CS
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc------------------------------cC
Confidence 34556888999999999 567999999999999999987754332221 24
Q ss_pred ccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeec--CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccC
Q 012007 234 HYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINA--HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 234 ~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~ 309 (473)
|.+.|++|+|+| ++++|++|+.||+|++||++++........ +...+.++++++++ +|++|+.||.|++||++..
T Consensus 163 H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~- 241 (435)
T 4e54_B 163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK- 241 (435)
T ss_dssp SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-
Confidence 999999999998 789999999999999999987654433333 34467889999987 8999999999999998621
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEEEEecCCccccc--ceeecCcceEEEEE--ecCCEEEEEe
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVNFWECEKHLSHG--GVLRGHKMAVLCLA--AAGNLVFSGS 384 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~--~~~~~l~s~~ 384 (473)
....+..|...|++++|+|++. +|++++.|+.|++||+++..... ....+|...|.+++ ++|++|++|+
T Consensus 242 ------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 242 ------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp ------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred ------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence 2355678999999999999875 78899999999999998654332 23457888887765 5799999999
Q ss_pred CCCcEEEEecCCCCceeEEEEecCCCC------ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGHTG------PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h~~------~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.||.|+|||+.+. .+...+..|.. .+....|+|++... ......++..+++++..++.|++||+.+++..
T Consensus 316 ~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~ 391 (435)
T 4e54_B 316 QKSEIRVYSASQW---DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI-VVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM 391 (435)
T ss_dssp SSSCEEEEESSSS---SSEEEECCCCCCCCSSSCCCBCEECSSSSCE-EEECCCCTTSCCSSTTCCCCEEEECSSSCCEE
T ss_pred CCCEEEEEECCCC---ccceEEecccccccccceeEEEEEcCCCCEE-EEEEcCCCCeEEEEecCCCEEEEEECCCCcEE
Confidence 9999999999883 44444444432 23445667665510 00000011112233335578999999887643
No 108
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=7.1e-32 Score=258.99 Aligned_cols=248 Identities=13% Similarity=0.081 Sum_probs=176.9
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
...+....+.+++.+|++|+.|++|++||+..++.........+ .+|.+.|.+
T Consensus 89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~---------------------------~gH~~~v~~ 141 (393)
T 4gq1_A 89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGK---------------------------SGHHNFVND 141 (393)
T ss_dssp --------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTT---------------------------TSCSSCEEE
T ss_pred CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeeccc---------------------------CCCCCceEE
Confidence 33344444455667899999999999999988765444333222 159999999
Q ss_pred EEEcC--------CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCC
Q 012007 241 LSLNA--------EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 241 l~~~~--------~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~ 310 (473)
++|+| ++++|++|+.|++|+|||++++.++..+..|...|.+++|+|++ +|++++.||.|++||++....
T Consensus 142 v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~ 221 (393)
T 4gq1_A 142 IDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS 221 (393)
T ss_dssp EEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred EEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence 99997 78999999999999999999998888888899999999999986 799999999999999975432
Q ss_pred Ccce-------------------eeeeeeccCCccEEEEEEc-cCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE
Q 012007 311 GTKH-------------------CLAQVLLKHENAVTALAVN-QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV 370 (473)
Q Consensus 311 ~~~~-------------------~~~~~~~~~~~~v~~l~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 370 (473)
.... .......+|...+.++.|. ++++.|++++.|+.+++||+...... ..+..|...+
T Consensus 222 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~-~~l~~~~~~~ 300 (393)
T 4gq1_A 222 AEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY-NEISDSTMKL 300 (393)
T ss_dssp ---------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------
T ss_pred cccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC-ceEeeecCcc
Confidence 1100 0011234677889999987 79999999999999999998754322 2222222222
Q ss_pred E--------------------EEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 371 L--------------------CLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 371 ~--------------------~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
. ++.+ ++.++++|+.||.|++||+.++ .++..+.+|..+|.+++|+|+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~---~~~~~~~~~~~~V~svafspdG~----- 372 (393)
T 4gq1_A 301 GPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK---DSNSIPIQLGMPIVDFCWHQDGS----- 372 (393)
T ss_dssp ---CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT---TCCEEEEECSSCEEEEEECTTSS-----
T ss_pred ccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC---cEEEEecCCCCcEEEEEEcCCCC-----
Confidence 1 1111 3457788889999999999884 44555667889999999999999
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+||+++.|| +.+|++.
T Consensus 373 --------~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 373 --------HLAIATEGS-VLLTRLM 388 (393)
T ss_dssp --------EEEEEESSE-EEEEEEG
T ss_pred --------EEEEEeCCC-eEEEEEe
Confidence 899998766 6677664
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-30 Score=247.30 Aligned_cols=254 Identities=17% Similarity=0.221 Sum_probs=202.5
Q ss_pred ccccccccCcccEEEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecce
Q 012007 152 KEFSGFKSNSGLVKAIIISGD---SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRS 228 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+........
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~---------------------------- 81 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA---------------------------- 81 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEE----------------------------
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEE----------------------------
Confidence 556778899999999999999 5999999999999999998733222111
Q ss_pred eeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEE--cCCC-EEEEEeCCCcEEEEeC
Q 012007 229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA--GFDS-LVFTGSADGTVKVWRR 305 (473)
Q Consensus 229 ~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~--~~~~-~l~s~~~dg~i~vwd~ 305 (473)
..+|...|.+++|+|++++|++++.||.|++||+.+++.+. +..|...|.++.| ++++ +|++++.||.|++||+
T Consensus 82 --~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 82 --QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp --EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred --eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 12499999999999999999999999999999999998776 4569999999999 7877 7999999999999999
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc---eeecCcceEEEEEecCCE---
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG---VLRGHKMAVLCLAAAGNL--- 379 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~--- 379 (473)
+... ....+..+ ..+.++.+.+ ..+++++.++.+.+|+++....... ....+...+.++.++...
T Consensus 159 ~~~~------~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (368)
T 3mmy_A 159 RSSN------PMMVLQLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT 229 (368)
T ss_dssp SCSS------CSEEEECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred CCCc------EEEEEecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC
Confidence 7433 22333333 3566666664 4788888999999999986433221 223455566667666554
Q ss_pred -EEEEeCCCcEEEEecCCCCceeEEEEecCCCC------------ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc
Q 012007 380 -VFSGSADRNICLWRREESGAHSCLAVLTGHTG------------PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446 (473)
Q Consensus 380 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~------------~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~ 446 (473)
+++++.||.|++|++........+..+.+|.. .|++++|+|++. +|++|+.||.
T Consensus 230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-------------~l~s~~~dg~ 296 (368)
T 3mmy_A 230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-------------TLATVGSDGR 296 (368)
T ss_dssp EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-------------CEEEEETTSC
T ss_pred eEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC-------------EEEEEccCCe
Confidence 99999999999999998543356677777776 799999999998 8999999999
Q ss_pred EEEEEcCCCCCC
Q 012007 447 VKVWRVSEHAPD 458 (473)
Q Consensus 447 v~iW~i~~~~~~ 458 (473)
|++||+..+...
T Consensus 297 i~iwd~~~~~~~ 308 (368)
T 3mmy_A 297 FSFWDKDARTKL 308 (368)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCcEE
Confidence 999999976543
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=1.7e-30 Score=252.57 Aligned_cols=251 Identities=16% Similarity=0.222 Sum_probs=205.0
Q ss_pred eeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCC------------ccccccccCcccEEEEEEeCCCC-EEEEE
Q 012007 116 IGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL------------KEFSGFKSNSGLVKAIIISGDSN-KIFTG 179 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~------------~~~~~~~~h~~~V~~l~~s~~~~-~l~s~ 179 (473)
+..+.+|.+.|.++.++ +.+||+|+.||.|+|||.. ..+..+.+|...|.+++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 35567899999988875 4599999999999999864 34556788999999999999998 99999
Q ss_pred eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCC
Q 012007 180 HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKT 258 (473)
Q Consensus 180 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~ 258 (473)
+.||.|++|++........... ......+|...|.+++|+| ++.+|++++.|+.
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~-------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~ 255 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVID-------------------------AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEE-------------------------CSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred eCCCeEEEEeCCCCCCCCceec-------------------------cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence 9999999999987432110000 0011224899999999999 7889999999999
Q ss_pred EEEEEcCCC---eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc
Q 012007 259 LKVWRISDC---KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN 333 (473)
Q Consensus 259 v~vwd~~~~---~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 333 (473)
|++||++++ +.+..+..|...|++++|+|++ ++++|+.||.|++||++.. ......+..|...|++++|+
T Consensus 256 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~-----~~~~~~~~~h~~~v~~i~~s 330 (430)
T 2xyi_A 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL-----KLKLHSFESHKDEIFQVQWS 330 (430)
T ss_dssp EEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-----TSCSEEEECCSSCEEEEEEC
T ss_pred EEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-----CCCeEEeecCCCCEEEEEEC
Confidence 999999987 5777888999999999999987 6889999999999999842 23456677899999999999
Q ss_pred cCC-CEEEEeCCCCcEEEEecCCcc-------------cccceeecCcceEEEEEec--CC-EEEEEeCCCcEEEEecCC
Q 012007 334 QES-AVVYCGSSDGLVNFWECEKHL-------------SHGGVLRGHKMAVLCLAAA--GN-LVFSGSADRNICLWRREE 396 (473)
Q Consensus 334 ~~~-~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~ 396 (473)
|++ .+|++++.||.|++||+.... .......+|...+.+++++ +. +|++++.||.|+||++..
T Consensus 331 p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 988 479999999999999997622 2334556788888777764 66 999999999999999875
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=6.3e-31 Score=253.40 Aligned_cols=247 Identities=15% Similarity=0.231 Sum_probs=197.6
Q ss_pred ceeeeeeecccEEEEEe---cCCEEEEeeCCCcEEEeeCCc---------cccccccCcccEEEEEEeCCC-CEEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLK---------EFSGFKSNSGLVKAIIISGDS-NKIFTGHQ 181 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~---~g~~l~tg~~dg~i~vwd~~~---------~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~ 181 (473)
.+..+.+|.+.|.++++ ++++|++|+.||.|+|||+.. .+..+.+|...|.+++|+|++ ++|++|+.
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~ 152 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence 35567889999999987 578999999999999999653 356788899999999999998 69999999
Q ss_pred CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEE
Q 012007 182 DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV 261 (473)
Q Consensus 182 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~v 261 (473)
||.|++||+.+++....... .+|...|.+++|+|++++|++++.|+.|++
T Consensus 153 dg~i~iwd~~~~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 202 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGP------------------------------DVHPDTIYSVDWSRDGALICTSCRDKRVRV 202 (402)
T ss_dssp TSCEEEEETTTTEEEEEECT------------------------------TTCCSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CCEEEEEECCCCCccEEEec------------------------------CCCCCceEEEEECCCCCEEEEEecCCcEEE
Confidence 99999999998764433210 138899999999999999999999999999
Q ss_pred EEcCCCeeeEEe-ecCCCc-eeEEEEcCCC-EEEEE---eCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC
Q 012007 262 WRISDCKCLESI-NAHDDA-INSVVAGFDS-LVFTG---SADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE 335 (473)
Q Consensus 262 wd~~~~~~~~~~-~~~~~~-v~~l~~~~~~-~l~s~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 335 (473)
||+++++.+..+ ..|... +.++.|++++ +|++| +.|+.|++||++.... ........|...+.+++|+|+
T Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~ 278 (402)
T 2aq5_A 203 IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE----PLSLQELDTSSGVLLPFFDPD 278 (402)
T ss_dssp EETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS----CSEEEECCCCSSCEEEEEETT
T ss_pred EeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC----CceEEeccCCCceeEEEEcCC
Confidence 999999999998 688776 8999999998 56666 6899999999975332 112223457788999999999
Q ss_pred CCEEE-EeCCCCcEEEEecCCcccccceeec--CcceEEE--EEecCCEEEEEeCCCcEEEEecCCC
Q 012007 336 SAVVY-CGSSDGLVNFWECEKHLSHGGVLRG--HKMAVLC--LAAAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 336 ~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~--~~~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
+++|+ +++.||.|++||+.+.......+.. |...+.+ +++++.++++ .++.+++|++.++
T Consensus 279 ~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 279 TNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp TTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred CCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 99886 5668999999999876542333333 3355544 4556776654 5679999999873
No 112
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2e-29 Score=244.27 Aligned_cols=236 Identities=22% Similarity=0.329 Sum_probs=194.4
Q ss_pred eeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe
Q 012007 120 VRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 120 ~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
.+|.+.|.+++|+ |++||+|+.||+|+|||.. +.+..+.+|...|.++.++ +.+|++|+.|+.+++||......
T Consensus 144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~ 221 (420)
T 4gga_A 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH 221 (420)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccce
Confidence 4677889998875 8899999999999999975 5577888999999999886 55999999999999999876553
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe----eeE
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK----CLE 271 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~----~~~ 271 (473)
..... .+|...+.++.|++++.++++++.|+.|++|+..+++ .+.
T Consensus 222 ~~~~~-------------------------------~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~ 270 (420)
T 4gga_A 222 HVATL-------------------------------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 270 (420)
T ss_dssp EEEEE-------------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE
T ss_pred eeEEe-------------------------------cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeee
Confidence 32221 2499999999999999999999999999999998765 356
Q ss_pred EeecCCCceeEEEEcCCC--EEEE--EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC--CC
Q 012007 272 SINAHDDAINSVVAGFDS--LVFT--GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS--SD 345 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~--~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~d 345 (473)
....|...|.+++|+|.+ ++++ |+.|+.|++||++.+. ....+ .+...+.++.|+++++.+++++ .|
T Consensus 271 ~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~------~~~~~-~~~~~v~~~~~~~~~~~lv~~sg~~d 343 (420)
T 4gga_A 271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA------CLSAV-DAHSQVCSILWSPHYKELISGHGFAQ 343 (420)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE------EEEEE-ECSSCEEEEEEETTTTEEEEEECTTT
T ss_pred eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc------cceee-ccccceeeeeecCCCCeEEEEEecCC
Confidence 677899999999999876 5554 4679999999997432 22223 3456789999999998887654 79
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCC
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+.|+|||+.+... ...+.+|...|.+++ ++|++|++|+.|++|+|||+..
T Consensus 344 ~~I~iwd~~~~~~-v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 344 NQLVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp CCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 9999999988654 457789999998776 4699999999999999999986
No 113
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-30 Score=244.97 Aligned_cols=236 Identities=9% Similarity=0.063 Sum_probs=179.9
Q ss_pred EeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC
Q 012007 169 ISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG 248 (473)
Q Consensus 169 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 248 (473)
+.+++++|++|+.||.|++||+.+++...... ...|.++.|+|+
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------------------------------~~~v~~~~~~~~-- 87 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----------------------------------TPNPRTGGEHPA-- 87 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----------------------------------EECCCTTCCCCS--
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----------------------------------cCCceeeeeCCc--
Confidence 34577899999999999999998876543332 235666778877
Q ss_pred EEEEEeCCCCEEEEEcC---------CCeeeEEee-cCCCceeEEEEcC--CC-EEEEEeCCCcEEEEeCcccCCCccee
Q 012007 249 LLYSGSWDKTLKVWRIS---------DCKCLESIN-AHDDAINSVVAGF--DS-LVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 249 ~l~s~s~dg~v~vwd~~---------~~~~~~~~~-~~~~~v~~l~~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
+++++.|++|++|+.. +++.+..+. .|...|.+++++| ++ ++++++.||.|++||++.+. .
T Consensus 88 -~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----~ 161 (343)
T 3lrv_A 88 -IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----Q 161 (343)
T ss_dssp -EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----E
T ss_pred -eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----E
Confidence 9999999999999665 455455554 6778999999999 76 89999999999999997432 2
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-CcceEEEEEe--cCCEEEEEeCCCcEEEE
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-HKMAVLCLAA--AGNLVFSGSADRNICLW 392 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~s~~~dg~i~iw 392 (473)
.......+...|++++|+|++.+|++|+.||.|++||++++......+.. |...|.++.+ ++.+|++++ |+.|++|
T Consensus 162 ~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iw 240 (343)
T 3lrv_A 162 YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCF 240 (343)
T ss_dssp EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEE
T ss_pred EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEE
Confidence 22222456668999999999999999999999999999987665345566 8989987765 688999999 5599999
Q ss_pred ecCCCCceeEEEEecCCCCcee--EEEEecCCCCCcccccCCCccEEEEEeeC-CCcEEEEEcCCCCCCcc
Q 012007 393 RREESGAHSCLAVLTGHTGPVK--CLAVEEDRDHDHEYHQKGDQRWTVYSGSL-DKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~--~l~~~~~~~~~~~~~~~~~~~~~l~s~s~-Dg~v~iW~i~~~~~~~~ 460 (473)
|+++......+..+..|...+. +++|+|++. +|++++. |+.|+||++......+.
T Consensus 241 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~l~~~s~~d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 241 DLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK-------------NMIAYSNESNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp ETTSSTTCBSSCCCBC-----CCEEEEECTTSS-------------EEEEEETTTTEEEEEEECTTTCSEE
T ss_pred EcCCCCcceeecccccccccccceEEEECCCCC-------------EEEEecCCCCcEEEEEEcccccceE
Confidence 9998543333333334555555 699999998 8999888 99999999977655443
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1e-28 Score=236.93 Aligned_cols=263 Identities=13% Similarity=0.119 Sum_probs=204.0
Q ss_pred CEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEE-EEEeCCCeEEEEeCCCCCeeeEEeecccccccee
Q 012007 134 DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKI-FTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDY 210 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (473)
.++++++.|+.|++||.. +.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++......
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~---------- 71 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---------- 71 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE----------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE----------
Confidence 468889999999999975 3444555554 58999999999987 567789999999998876544332
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~ 289 (473)
+...+.+++|+|++++|++++ .++.|++||+.+++.+..+..+ ..+.+++|++++
T Consensus 72 -----------------------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg 127 (391)
T 1l0q_A 72 -----------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG 127 (391)
T ss_dssp -----------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS
T ss_pred -----------------------CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC
Confidence 444899999999999886554 6799999999999998888755 468999999998
Q ss_pred -EE-EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE-EEeCCCCcEEEEecCCcccccceeecC
Q 012007 290 -LV-FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV-YCGSSDGLVNFWECEKHLSHGGVLRGH 366 (473)
Q Consensus 290 -~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~ 366 (473)
.+ ++++.++.|++||+.... ....+.. ...+.+++|+|++++| ++++.++.|++||+++..... .+. +
T Consensus 128 ~~l~~~~~~~~~v~~~d~~~~~------~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~-~ 198 (391)
T 1l0q_A 128 KKLYVTNNGDKTVSVINTVTKA------VINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID-TVK-V 198 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTE------EEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEE-C
T ss_pred CEEEEEeCCCCEEEEEECCCCc------EEEEEec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE-EEe-c
Confidence 45 688889999999986322 2233333 3567999999999877 677889999999998764432 222 3
Q ss_pred cceE--EEEEecCCEEEEEe---CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 367 KMAV--LCLAAAGNLVFSGS---ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 367 ~~~v--~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
...+ .++++++++|++++ .++.|++||+.+ .+.+..+..|. .+.+++|+|+++. +++++
T Consensus 199 ~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~---~~~~~~~~~~~-~~~~~~~s~dg~~------------l~~s~ 262 (391)
T 1l0q_A 199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---NKITARIPVGP-DPAGIAVTPDGKK------------VYVAL 262 (391)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT---TEEEEEEECCS-SEEEEEECTTSSE------------EEEEE
T ss_pred CCCccceEECCCCCEEEEEecCcCCCcEEEEECCC---CeEEEEEecCC-CccEEEEccCCCE------------EEEEc
Confidence 3344 44556788888888 689999999988 45666776665 4789999999972 44788
Q ss_pred eCCCcEEEEEcCCCC
Q 012007 442 SLDKSVKVWRVSEHA 456 (473)
Q Consensus 442 s~Dg~v~iW~i~~~~ 456 (473)
+.|+.|++||+..++
T Consensus 263 ~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 263 SFXNTVSVIDTATNT 277 (391)
T ss_dssp TTTTEEEEEETTTTE
T ss_pred CCCCEEEEEECCCCc
Confidence 899999999998754
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=4.3e-29 Score=236.16 Aligned_cols=241 Identities=10% Similarity=0.122 Sum_probs=182.3
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+.+.....|...|.+++|+|||++|++|+.+| +++|++.........
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~-------------------------------- 56 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ-------------------------------- 56 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE--------------------------------
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee--------------------------------
Confidence 44556688999999999999999999988775 789998765432211
Q ss_pred eeccCCeeEEEEcCCCCEE-EEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCC
Q 012007 232 IRHYDAVSCLSLNAEQGLL-YSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~ 310 (473)
+...+..+++.++++.+ ++++.|++|++||+.+++++..+. +...|.++.++++..+++ .|+.|++||+....+
T Consensus 57 --~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~~~ 131 (355)
T 3vu4_A 57 --EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNPWK 131 (355)
T ss_dssp --ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTTCC
T ss_pred --ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCCce
Confidence 22357788898888877 567788999999999999999887 667899999988764443 488999999974311
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEE--eCCCCcEEEEecCCcc--------------cc-cceeecCcceEEEE
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYC--GSSDGLVNFWECEKHL--------------SH-GGVLRGHKMAVLCL 373 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~~~dg~i~iwd~~~~~--------------~~-~~~~~~~~~~v~~~ 373 (473)
....+.. ....+++++ .++++ |+.||.|++||+++.. .. ...+.+|...|.++
T Consensus 132 -----~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~ 201 (355)
T 3vu4_A 132 -----RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV 201 (355)
T ss_dssp -----BSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEE
T ss_pred -----eeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE
Confidence 1112222 344556666 55655 6899999999998643 11 46778999998777
Q ss_pred Ee--cCCEEEEEeCCCc-EEEEecCCCCceeEEEEec-C-CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEE
Q 012007 374 AA--AGNLVFSGSADRN-ICLWRREESGAHSCLAVLT-G-HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVK 448 (473)
Q Consensus 374 ~~--~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~-~-h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~ 448 (473)
++ ++++|++|+.|++ |++||+.+ .+++..+. + |...|++++|+|++. +|++++.|++|+
T Consensus 202 ~~s~~g~~l~s~s~d~~~v~iwd~~~---~~~~~~~~~g~h~~~v~~~~~s~~~~-------------~l~s~s~d~~v~ 265 (355)
T 3vu4_A 202 RLNRKSDMVATCSQDGTIIRVFKTED---GVLVREFRRGLDRADVVDMKWSTDGS-------------KLAVVSDKWTLH 265 (355)
T ss_dssp EECTTSSEEEEEETTCSEEEEEETTT---CCEEEEEECTTCCSCEEEEEECTTSC-------------EEEEEETTCEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCC---CcEEEEEEcCCCCCcEEEEEECCCCC-------------EEEEEECCCEEE
Confidence 65 6999999999998 99999998 56777777 5 999999999999998 899999999999
Q ss_pred EEEcCCCC
Q 012007 449 VWRVSEHA 456 (473)
Q Consensus 449 iW~i~~~~ 456 (473)
|||+....
T Consensus 266 iw~~~~~~ 273 (355)
T 3vu4_A 266 VFEIFNDQ 273 (355)
T ss_dssp EEESSCCS
T ss_pred EEEccCCC
Confidence 99998753
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-29 Score=245.04 Aligned_cols=273 Identities=14% Similarity=0.115 Sum_probs=200.0
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---eeeEEeeccc----ccc------ceeEeecCCCcceEEE----
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN---ASVHKRVGSL----PTF------KDYVKSSVNPKNYVEV---- 223 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~---- 223 (473)
..++.+++|+++|++|+++ .++.|++||+.+++ .......... +.. ................
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999966665 57899999999887 3332221110 000 0000000000000000
Q ss_pred --------eecceeeEeeccCCeeEEEEcCCCCEE-EEEeCCCCEEEEEcC--CCeeeEEee--cCCCceeEEEEcCCC-
Q 012007 224 --------RRNRSVLKIRHYDAVSCLSLNAEQGLL-YSGSWDKTLKVWRIS--DCKCLESIN--AHDDAINSVVAGFDS- 289 (473)
Q Consensus 224 --------~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~s~dg~v~vwd~~--~~~~~~~~~--~~~~~v~~l~~~~~~- 289 (473)
.........+|.+.|.+++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 000001112467789999999999996 899999999999999 888888876 567899999999998
Q ss_pred EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC---CCEEEEeCCCCcEEEEecCCcccccceeecC
Q 012007 290 LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE---SAVVYCGSSDGLVNFWECEKHLSHGGVLRGH 366 (473)
Q Consensus 290 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 366 (473)
+|++++.+|.|++|++...... ......+.+|...|++++|+|+ +++|++++.|+.|++||+++.......+.+|
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEE--KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCS--SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred EEEEEeCCCcEEEEecCCcccc--cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence 8999999999999998743321 1023356789999999999999 9999999999999999998866554556689
Q ss_pred cceEEEEEe-cCCEEEEEeCCCcEEEEecCCCCceeEEEEec-------------------------CCCCceeEEEEec
Q 012007 367 KMAVLCLAA-AGNLVFSGSADRNICLWRREESGAHSCLAVLT-------------------------GHTGPVKCLAVEE 420 (473)
Q Consensus 367 ~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~h~~~V~~l~~~~ 420 (473)
...+.++.+ ++++|++|+.|+.|++||+.++ +++..+. .+...|.+++|+|
T Consensus 241 ~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 241 KHFVSSICCGKDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SSCEEEEEECSTTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CCceEEEEECCCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 988877776 6999999999999999999984 4444443 2245789999999
Q ss_pred CCCCCcccccCCCccEEEEEee-CCCcEEEEEc
Q 012007 421 DRDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRV 452 (473)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i 452 (473)
++. +|++++ .|+.|+||++
T Consensus 318 ~~~-------------~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 318 NLP-------------FVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSS-------------EEEEEETTCSEEEEEEE
T ss_pred CCC-------------EEEEEECCCCeEEEEEe
Confidence 988 788887 8999999999
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.7e-31 Score=253.92 Aligned_cols=250 Identities=12% Similarity=0.112 Sum_probs=197.9
Q ss_pred eecccEEEEEe--cCCEEEEeeCCCcEEEeeCCccccccccCcc-----cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 121 RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSG-----LVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 121 ~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~-----~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
.|++.|++++| +|++||+++.||+|+|||....+..+. |.. .|.+++|+|||++||+|+.||+|++||+.++
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 44677887765 599999999999999999776666666 665 5999999999999999999999999999887
Q ss_pred Cee-----eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe
Q 012007 194 NAS-----VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 194 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
... ....+.. ...+|.+.|.+++|+|+| +++++.|++|++||+..++
T Consensus 162 ~l~~~~~i~l~ti~~--------------------------~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 162 SENTPEFYFESSIRL--------------------------SDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp TTTCCCCEEEEEEEC--------------------------SCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred ccccccceeeeeeec--------------------------ccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence 530 1111100 001388899999999999 8889999999999998877
Q ss_pred e---eEEe-ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEE--ccCCCEEEEe
Q 012007 269 C---LESI-NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV--NQESAVVYCG 342 (473)
Q Consensus 269 ~---~~~~-~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~~~ 342 (473)
. ..++ .+|...|.+++|+ +..+++++ ++.|++||+..+ . ......+|...|..++| +|++..|+++
T Consensus 214 ~~~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~-----~-~~~~~~gh~~~V~~va~~~s~d~~~La~a 285 (588)
T 2j04_A 214 HQPVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNY-----S-ISSLKTGSLENFHIIPLNHEKESTILLMS 285 (588)
T ss_dssp SCCCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTT-----E-EEEEECSCCSCCCEEEETTCSSCEEEEEC
T ss_pred cccceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCC-----e-EEEEEcCCCceEEEEEeeeCCCCCEEEEE
Confidence 3 3566 4788999999999 67888887 699999998632 2 22223379999999999 9999999999
Q ss_pred CCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 343 SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
+.||+ ++|..+. ..+++++..+++. |+++++|+.... .+..+.+ ...|.+++|+|+|
T Consensus 286 ~edG~-klw~~d~---------------~~~spd~~l~a~~--d~~v~lW~~~g~----~l~~~~~-~~~I~~va~SPdG 342 (588)
T 2j04_A 286 NKTSY-KVLLEDE---------------LHVTADNIIAPYL--EKKFKKWSTIWN----EFNNYET-TLVIHGISLSPDG 342 (588)
T ss_dssp SSCEE-EEEESSS---------------EEEECCCSSHHHH--HHHHHHTTTTTT----SSSSSCC-EEEEEEEEECTTS
T ss_pred cCCCC-EEEeecc---------------EEECCCceEEEEc--CCEEEEEECCCC----ceeeecc-ceEEEEEEECCCC
Confidence 99999 9998761 3478888877775 999999998652 1334444 6789999999999
Q ss_pred CCCcccccCCCccEEEEEeeC
Q 012007 423 DHDHEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~ 443 (473)
+ ++|+++.
T Consensus 343 ~-------------~lA~~~~ 350 (588)
T 2j04_A 343 Y-------------SIAIVYD 350 (588)
T ss_dssp S-------------EEEEEEE
T ss_pred C-------------EEEEEEe
Confidence 8 7887763
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=3.5e-30 Score=233.56 Aligned_cols=266 Identities=14% Similarity=0.112 Sum_probs=185.4
Q ss_pred EEEEeeCCCcEEEeeCC-----ccccccccCcccEEEEEEeCCCCEEEE-EeCCCeE-EEEeCCCCCeeeEEeecccccc
Q 012007 135 LLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIISGDSNKIFT-GHQDGKI-RIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~-----~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~dg~i-~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
.++++++ ..|++|+.. +.+.++.+|..+|..|.+.||..-|+. +-.+=.+ .++-+.-... ....
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd--------~~~~ 126 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSD--------DESE 126 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--------------C
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCC--------cccc
Confidence 6777886 599999854 456778889999999999997543332 2111111 1111110000 0000
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe--CCCCEEEEEc-CCCeeeEEeecCCCceeEEE
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRI-SDCKCLESINAHDDAINSVV 284 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s--~dg~v~vwd~-~~~~~~~~~~~~~~~v~~l~ 284 (473)
......-+|...|..+ ++++++.+++ .|+.|++|++ .+++.+..+..|...+..++
T Consensus 127 ------------------~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 127 ------------------KQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILT 185 (356)
T ss_dssp ------------------CEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEE
T ss_pred ------------------ccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEE
Confidence 0000111244444443 5666666544 5999999999 55888899999999999999
Q ss_pred EcC---CC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccC---CccEEEEEEccCCCEE------------EEeCCC
Q 012007 285 AGF---DS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH---ENAVTALAVNQESAVV------------YCGSSD 345 (473)
Q Consensus 285 ~~~---~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~l------------~~~~~d 345 (473)
|++ ++ .|++++.|++|+|||++++. ....+.+| ...+.+++|+|++.++ ++|+.|
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQ------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETTTCC------EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred eeccCCCCceEEEecCCCcEEEEECCCCc------EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 988 44 99999999999999997433 23444443 3467888999999876 567889
Q ss_pred CcEEEEecCCcccccce----eecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCcee-EEEEec
Q 012007 346 GLVNFWECEKHLSHGGV----LRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK-CLAVEE 420 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~-~l~~~~ 420 (473)
++|++||..++...... ..+|.....+.+.++.++++|+.|++|+|||+.+ .+++.++.+|...+. .++|+|
T Consensus 260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~t---Gk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 260 FQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLL---GQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp EEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTT---CSEEEEECCC--CCCCEEEECS
T ss_pred cEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCC---CcEEEEecCCCCCeEEEEEECC
Confidence 99999999876544222 2467666777777799999999999999999998 678899999987655 689999
Q ss_pred CCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 421 DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
+++ +|++|+.|++|+|||+
T Consensus 337 DG~-------------~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 337 TDS-------------HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSS-------------EEEEECTTSCEEEEEE
T ss_pred CCC-------------EEEEEECCCcEEEecC
Confidence 998 8999999999999996
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1e-28 Score=240.22 Aligned_cols=268 Identities=9% Similarity=0.116 Sum_probs=208.3
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCc--ccc-----ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEe
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLK--EFS-----GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKR 200 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~--~~~-----~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 200 (473)
++++++.++++++.|+.|++||... ... .+.+|.+.|.+++|+++++++++++.|+.|++||+.+++......
T Consensus 129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~ 208 (433)
T 3bws_A 129 RFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD 208 (433)
T ss_dssp EESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE
T ss_pred EEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc
Confidence 3444567888888899999999762 222 455789999999999999999999999999999998876543332
Q ss_pred eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCc
Q 012007 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDA 279 (473)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~ 279 (473)
.|...+.+++|+|+++++++++ .|+.|++||+++++.+..+..+ ..
T Consensus 209 --------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~ 255 (433)
T 3bws_A 209 --------------------------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GL 255 (433)
T ss_dssp --------------------------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SE
T ss_pred --------------------------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CC
Confidence 2778899999999999886554 7999999999999998888764 45
Q ss_pred eeEEEEcCCC-EEEEEe--------CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE-EEEeCCCCcEE
Q 012007 280 INSVVAGFDS-LVFTGS--------ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV-VYCGSSDGLVN 349 (473)
Q Consensus 280 v~~l~~~~~~-~l~s~~--------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~dg~i~ 349 (473)
+.+++++|++ .+++++ .||.|++||++.+. . .....+...+.+++|+|+++. +++++.|+.|+
T Consensus 256 ~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~------~-~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 256 PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK------L-IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE------E-EEEEEEEECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc------E-EeeccCCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 8999999998 777777 48899999987431 1 122345568899999999975 46668999999
Q ss_pred EEecCCcccccceeecCcceE--EEEEecCCEEEEEeC---------------CCcEEEEecCCCCceeEEEEecCCCCc
Q 012007 350 FWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSA---------------DRNICLWRREESGAHSCLAVLTGHTGP 412 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~h~~~ 412 (473)
+||+++........ +...+ .++++++++|++++. ||.|++||+.+ .+.+..+.. ...
T Consensus 329 v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~---~~~~~~~~~-~~~ 402 (433)
T 3bws_A 329 VYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT---DTVKEFWEA-GNQ 402 (433)
T ss_dssp EEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT---TEEEEEEEC-SSS
T ss_pred EEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC---CcEEEEecC-CCC
Confidence 99998755443222 33444 455567888888876 57999999988 456666665 457
Q ss_pred eeEEEEecCCCCCcccccCCCccEEEEEee-CCCcEEEEEcCC
Q 012007 413 VKCLAVEEDRDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVSE 454 (473)
Q Consensus 413 V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~ 454 (473)
+.+++|+|+++ +|++++ .|+.|++|++..
T Consensus 403 ~~~~~~s~dg~-------------~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 403 PTGLDVSPDNR-------------YLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEECTTSC-------------EEEEEETTTTEEEEEEETT
T ss_pred CceEEEcCCCC-------------EEEEEECCCCeEEEEEecC
Confidence 89999999998 677665 599999999864
No 120
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.7e-28 Score=234.90 Aligned_cols=276 Identities=17% Similarity=0.208 Sum_probs=206.1
Q ss_pred CCcEEEeeC--CccccccccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCc
Q 012007 142 SKNIRVWKN--LKEFSGFKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK 218 (473)
Q Consensus 142 dg~i~vwd~--~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (473)
++.+++|+. .+....+.+|.+.|++++|+| ++++|++|+.||.|++||+.+..............
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~------------ 89 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS------------ 89 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE------------
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc------------
Confidence 345677754 355667888999999999999 99999999999999999999876543332110000
Q ss_pred ceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC----EEEE
Q 012007 219 NYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS----LVFT 293 (473)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~----~l~s 293 (473)
.......+|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+. +...+.++.+.+.+ ++++
T Consensus 90 -------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (408)
T 4a11_B 90 -------IGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAV 161 (408)
T ss_dssp -------ECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEE
T ss_pred -------ccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEE
Confidence 00000013889999999999 78899999999999999999999988887 67789999998753 8999
Q ss_pred EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEEEEecCCccccccee---------
Q 012007 294 GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVNFWECEKHLSHGGVL--------- 363 (473)
Q Consensus 294 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--------- 363 (473)
++.||.|++||++... ....+..|...|.+++|+|++. +|++++.||.|++||+++.......+
T Consensus 162 ~~~~~~v~~~d~~~~~------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 235 (408)
T 4a11_B 162 GTRGPKVQLCDLKSGS------CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235 (408)
T ss_dssp EESSSSEEEEESSSSC------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred EcCCCeEEEEeCCCcc------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence 9999999999997432 3456678999999999999998 68999999999999997654332222
Q ss_pred ------ecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC-----CCceeEEEEecCCCCCccccc
Q 012007 364 ------RGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGH-----TGPVKCLAVEEDRDHDHEYHQ 430 (473)
Q Consensus 364 ------~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~~~~~~~ 430 (473)
.+|...+.++.+ ++++|++++.||.|++||+.++.. ...+.++ ...+..........
T Consensus 236 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------- 305 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN---TLVNYGKVCNNSKKGLKFTVSCGCSS------- 305 (408)
T ss_dssp CTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB---CCCCCCCCCCCCSSCCCCEECCSSSS-------
T ss_pred eeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc---ceeccccccccccccceeEEecCCCc-------
Confidence 567778877665 688999999999999999998432 2222221 11112122222222
Q ss_pred CCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 431 KGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 431 ~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
.+++++.|+.|++||+..+....
T Consensus 306 ------~~~~~~~~~~i~v~d~~~~~~~~ 328 (408)
T 4a11_B 306 ------EFVFVPYGSTIAVYTVYSGEQIT 328 (408)
T ss_dssp ------CEEEEEETTEEEEEETTTCCEEE
T ss_pred ------eEEEEecCCEEEEEECcCCccee
Confidence 47777889999999998876543
No 121
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.7e-27 Score=221.37 Aligned_cols=236 Identities=22% Similarity=0.311 Sum_probs=193.2
Q ss_pred eeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe
Q 012007 120 VRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 120 ~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
.+|...|.++.+ ++++||+|+.||+|++||.. +.+..+.+|...+.++.+. +..|++++.++.+++|+......
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~ 141 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH 141 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCce
Confidence 467788998876 48899999999999999975 5567788999988887765 55999999999999999887654
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee----eE
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC----LE 271 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~----~~ 271 (473)
..... .+|...+.++.+.+++++|++++.|+.|++||+++++. ..
T Consensus 142 ~~~~~-------------------------------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 190 (318)
T 4ggc_A 142 HVATL-------------------------------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 190 (318)
T ss_dssp EEEEE-------------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE
T ss_pred eEEEE-------------------------------cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee
Confidence 33222 24899999999999999999999999999999987653 34
Q ss_pred EeecCCCceeEEEEcCCC----EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe--CCC
Q 012007 272 SINAHDDAINSVVAGFDS----LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG--SSD 345 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~~d 345 (473)
....+...|.++.+.+.+ .+++++.++.|++||.+... ......+...+..+.|++++..++++ +.|
T Consensus 191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d 263 (318)
T 4ggc_A 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-------CLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263 (318)
T ss_dssp EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC-------EEEEEECSSCEEEEEEETTTTEEEEEECTTT
T ss_pred eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc-------ccccccceeeeeeeeecccccceEEEEEcCC
Confidence 556788899999998876 34567889999999986432 23344567789999999999887764 479
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCC
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+.|++||++++.. ...+.+|...|.++++ ++++|++|+.||+|+|||+..
T Consensus 264 ~~i~iwd~~~~~~-~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 264 NQLVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 9999999998654 4577899999987765 699999999999999999976
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.7e-26 Score=221.37 Aligned_cols=297 Identities=11% Similarity=0.127 Sum_probs=211.6
Q ss_pred cceeeeeeecccEEEEEe--cCCEE-EEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEE
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLL-YTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRI 187 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l-~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~v 187 (473)
..+..+..|. .+.++++ +|++| ++++.|+.|++||.. +.+..+..+ ..|.+++|+|++++|+.++ .++.|++
T Consensus 23 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v 100 (391)
T 1l0q_A 23 KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSV 100 (391)
T ss_dssp EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceEECCCCCEEEEEECCCCEEEE
Confidence 3445555554 4677665 57766 677789999999975 334444444 4899999999999886554 6799999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEE-EEEeCCCCEEEEEcCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLL-YSGSWDKTLKVWRISD 266 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~s~dg~v~vwd~~~ 266 (473)
||+.+++...... +...+.+++|+|++++| ++++.|+.|++||+.+
T Consensus 101 ~d~~~~~~~~~~~---------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 101 IDTTSNTVAGTVK---------------------------------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp EETTTTEEEEEEE---------------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EECCCCeEEEEEe---------------------------------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 9999876543322 45578999999999977 6788899999999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC-EE-EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-
Q 012007 267 CKCLESINAHDDAINSVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS- 343 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~- 343 (473)
++.+..+..+. .+.+++|++++ .+ ++++.++.|++||++... ... ...+...+.+++|+|++++|++++
T Consensus 148 ~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~------~~~-~~~~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 148 KAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS------VID-TVKVEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE------EEE-EEECSSEEEEEEECTTSSEEEEEEE
T ss_pred CcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe------EEE-EEecCCCccceEECCCCCEEEEEec
Confidence 99998888654 56899999998 44 677889999999997421 122 223566899999999999998887
Q ss_pred --CCCcEEEEecCCcccccceeecCcc-eEEEEEecCCEE-EEEeCCCcEEEEecCCCCceeEEEEecCCCCcee---EE
Q 012007 344 --SDGLVNFWECEKHLSHGGVLRGHKM-AVLCLAAAGNLV-FSGSADRNICLWRREESGAHSCLAVLTGHTGPVK---CL 416 (473)
Q Consensus 344 --~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~---~l 416 (473)
.++.|++||++++... ..+..|.. ...++++++++| ++++.|+.|++||+.+ .+.+..+..|..+.. .+
T Consensus 220 ~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~---~~~~~~~~~~~~~~~~~~~~ 295 (391)
T 1l0q_A 220 DKYFNTVSMIDTGTNKIT-ARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT---NTITATMAVGKNPYASGQFI 295 (391)
T ss_dssp CSSCCEEEEEETTTTEEE-EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEECSSSEECCSSCE
T ss_pred CcCCCcEEEEECCCCeEE-EEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC---CcEEEEEECCcCCCccceee
Confidence 6899999999876543 33444443 234566778877 6778899999999998 466666666655432 24
Q ss_pred EEecCCCCCc--ccccCC-------CccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 417 AVEEDRDHDH--EYHQKG-------DQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 417 ~~~~~~~~~~--~~~~~~-------~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
.+.|++.... .+.... .....|...+.|..+++|++..+..
T Consensus 296 ~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 296 GSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp EECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred ecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 4444332110 000000 0113577888899999999987653
No 123
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=6.7e-27 Score=219.78 Aligned_cols=212 Identities=17% Similarity=0.267 Sum_probs=176.2
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC----eeeEEeecCCCceeEEEEcC---CCEEEEEeCCCcEEEEe
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC----KCLESINAHDDAINSVVAGF---DSLVFTGSADGTVKVWR 304 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~----~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~dg~i~vwd 304 (473)
.+|.+.|.+++|+|++++|++|+.||.|++||+.++ +.+..+..|...|.+++|++ ..+|++++.||.|++||
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 369999999999999999999999999999999876 56777889999999999998 34999999999999999
Q ss_pred CcccCCC---cceeeeeeeccCCccEEEEEEccC--CCEEEEeCCCCcEEEEecCCccccccee------------ecCc
Q 012007 305 RELQGKG---TKHCLAQVLLKHENAVTALAVNQE--SAVVYCGSSDGLVNFWECEKHLSHGGVL------------RGHK 367 (473)
Q Consensus 305 ~~~~~~~---~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~ 367 (473)
++..... ........+..|...|.+++|+|+ +.+|++++.||.|++||+++........ ..|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence 9754321 112445667789999999999999 9999999999999999998754432221 1466
Q ss_pred ceEEEEEe--c---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC----CCCcccccCCCccEEE
Q 012007 368 MAVLCLAA--A---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR----DHDHEYHQKGDQRWTV 438 (473)
Q Consensus 368 ~~v~~~~~--~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----~~~~~~~~~~~~~~~l 438 (473)
..+.++.+ + +.+|++++.|+.+.+|+... .....+..+.+|...|++++|+|++ . +|
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~-------------~l 233 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLIRSISWAPSIGRWYQ-------------LI 233 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCEEEEEECCCSSCSSE-------------EE
T ss_pred cceeEEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcceeEEEECCCCCCcce-------------EE
Confidence 66666654 3 88999999999997777766 3445688889999999999999997 4 89
Q ss_pred EEeeCCCcEEEEEcCCCCC
Q 012007 439 YSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 439 ~s~s~Dg~v~iW~i~~~~~ 457 (473)
++|+.||.|++||+..+..
T Consensus 234 ~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 234 ATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp EEEETTSCEEEEEEEECC-
T ss_pred EEEcCCCeEEEEeCCCCcC
Confidence 9999999999999987644
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=5.3e-28 Score=232.01 Aligned_cols=228 Identities=11% Similarity=0.102 Sum_probs=164.7
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCc-------cccccccCcccEEEEEEeC--------CCCEEEEEeCCCeEEEEeCCCC
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLK-------EFSGFKSNSGLVKAIIISG--------DSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~-------~~~~~~~h~~~V~~l~~s~--------~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
+.+++.+|++|+.|++|+|||... .+..+.+|.+.|.+|+|+| |+++||+|+.|++|+|||+.++
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 345577999999999999998542 2456889999999999998 7899999999999999999766
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEEcCCCeeeEE
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLES 272 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~ 272 (473)
...... .+|...|.+++|+|++ .+|++|+.|++|++||+++++....
T Consensus 177 ~~~~~~--------------------------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~ 224 (393)
T 4gq1_A 177 GPILAG--------------------------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE 224 (393)
T ss_dssp EEEEEE--------------------------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----
T ss_pred ceeeee--------------------------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccc
Confidence 533222 2488999999999987 4899999999999999988764332
Q ss_pred e-------------------------ecCCCceeEEEEc-CCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc
Q 012007 273 I-------------------------NAHDDAINSVVAG-FDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN 325 (473)
Q Consensus 273 ~-------------------------~~~~~~v~~l~~~-~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 325 (473)
. .+|...+.++.|. +++ .+++++.|+.+++||+...... ..+..|..
T Consensus 225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~------~~l~~~~~ 298 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY------NEISDSTM 298 (393)
T ss_dssp ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------
T ss_pred ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC------ceEeeecC
Confidence 2 3567788889876 565 8999999999999998743321 11112222
Q ss_pred cE------------------EEEEEcc--CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEE
Q 012007 326 AV------------------TALAVNQ--ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSG 383 (473)
Q Consensus 326 ~v------------------~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~ 383 (473)
.+ ....++| ++.++++|+.||.|++||+.++... ....+|...|.++ +++|++||++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~-~~~~~~~~~V~svafspdG~~LA~a 377 (393)
T 4gq1_A 299 KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN-SIPIQLGMPIVDFCWHQDGSHLAIA 377 (393)
T ss_dssp -----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC-EEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE-EEecCCCCcEEEEEEcCCCCEEEEE
Confidence 22 2233443 4456788899999999999886554 3455677777655 5679999999
Q ss_pred eCCCcEEEEecCC
Q 012007 384 SADRNICLWRREE 396 (473)
Q Consensus 384 ~~dg~i~iwd~~~ 396 (473)
+.|| +.+|++..
T Consensus 378 s~~G-v~lvrL~g 389 (393)
T 4gq1_A 378 TEGS-VLLTRLMG 389 (393)
T ss_dssp ESSE-EEEEEEGG
T ss_pred eCCC-eEEEEEeC
Confidence 9665 76776643
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=5.1e-26 Score=226.27 Aligned_cols=283 Identities=11% Similarity=0.109 Sum_probs=216.3
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC--CCCCeeeEEee
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV--SRKNASVHKRV 201 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~ 201 (473)
+..+++++.++++++.|++|.+||.. +.+..+..+.. +..++|+|||++|++++.|+.|++||+ .+.+......
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~- 219 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK- 219 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-
Confidence 44567788899999999999999965 44555653333 889999999999999999999999999 5554332222
Q ss_pred ccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC----CCCEEEEEeC-CCCEEEEEcCCCeeeEEeecC
Q 012007 202 GSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA----EQGLLYSGSW-DKTLKVWRISDCKCLESINAH 276 (473)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~ 276 (473)
+...+..++|+| +|++|++++. +++|.+||..+++++..+..+
T Consensus 220 --------------------------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~ 267 (543)
T 1nir_A 220 --------------------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 267 (543)
T ss_dssp --------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred --------------------------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence 445678999999 9999999984 899999999999999888652
Q ss_pred -----------CCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-
Q 012007 277 -----------DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG- 342 (473)
Q Consensus 277 -----------~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~- 342 (473)
...+..+.+++++ ++++...++.|.+||...... +......+...+..++|+|++++|+++
T Consensus 268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-----l~~~~i~~~~~~~~~~~spdg~~l~va~ 342 (543)
T 1nir_A 268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-----LTVTSIGAAPFLHDGGWDSSHRYFMTAA 342 (543)
T ss_dssp EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS-----CEEEEEECCSSCCCEEECTTSCEEEEEE
T ss_pred CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc-----ceeEEeccCcCccCceECCCCCEEEEEe
Confidence 2268899999876 677888899999999874322 111122355668889999999977655
Q ss_pred CCCCcEEEEecCCcccccceee---cCcceEEEE-Eec-CCEEEEEe-CCCcEEEEecCCCC----ceeEEEEecCCCCc
Q 012007 343 SSDGLVNFWECEKHLSHGGVLR---GHKMAVLCL-AAA-GNLVFSGS-ADRNICLWRREESG----AHSCLAVLTGHTGP 412 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~-~~~-~~~l~s~~-~dg~i~iwd~~~~~----~~~~~~~~~~h~~~ 412 (473)
..+++|.+||..++........ .|......+ .++ +.+++++. .|++|.+||+.+.+ .+++++.+.+|.+.
T Consensus 343 ~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~ 422 (543)
T 1nir_A 343 NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 422 (543)
T ss_dssp GGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred cCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence 5688999999998654432221 254333333 566 66667765 68999999998732 26889999999989
Q ss_pred eeEEEEecCCCCCcccccCCCccEEEEEee-------CCCcEEEEEcCCCCCCcc
Q 012007 413 VKCLAVEEDRDHDHEYHQKGDQRWTVYSGS-------LDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 413 V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s-------~Dg~v~iW~i~~~~~~~~ 460 (473)
+..++++|+++ .|++++ .+++|.|||+.+.+...+
T Consensus 423 ~~~v~~~pdg~-------------~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~ 464 (543)
T 1nir_A 423 SLFIKTHPKSS-------------HLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 464 (543)
T ss_dssp CCCEECCTTCC-------------EEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred ceEEEcCCCCC-------------cEEEecCCCCCcccCceEEEEECCCCCCCeE
Confidence 99999999999 788876 378999999998876533
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=3.3e-26 Score=222.56 Aligned_cols=242 Identities=10% Similarity=0.074 Sum_probs=187.4
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
..+.+++|+|++.++++++.|+.|++||+.+++......... ..+|...|.++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~---------------------------~~~~~~~v~~~ 175 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK---------------------------YKKKLGFVETI 175 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH---------------------------HHTTCCEEEEE
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc---------------------------ccccCCceeEE
Confidence 456699999987788888889999999999887543222111 11388899999
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EE-EEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
+|++++.++++++.|+.|++||+++++.+..+..|...+.+++|++++ .+ ++++.|+.|++||++.+. ....
T Consensus 176 ~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~------~~~~ 249 (433)
T 3bws_A 176 SIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL------EIRK 249 (433)
T ss_dssp EEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE------EEEE
T ss_pred EEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc------EEEE
Confidence 999999999999999999999999999999999999999999999987 45 566689999999987322 2222
Q ss_pred eccCCccEEEEEEccCCCEEEEeC--------CCCcEEEEecCCcccccceeecCcceE--EEEEecCCE-EEEEeCCCc
Q 012007 320 LLKHENAVTALAVNQESAVVYCGS--------SDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNL-VFSGSADRN 388 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~-l~s~~~dg~ 388 (473)
+. +...+.+++|+|++++|++++ .||.|++||++++...... .|...+ .+++++++. +++++.|+.
T Consensus 250 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~ 326 (433)
T 3bws_A 250 TD-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSK 326 (433)
T ss_dssp CC-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTE
T ss_pred ec-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCE
Confidence 32 345699999999999998887 5889999999876443222 333344 445566764 566689999
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC---------------CCcEEEEEcC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL---------------DKSVKVWRVS 453 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~---------------Dg~v~iW~i~ 453 (473)
|++||+.+ .+.+..+. +...+.+++|+|++. +|++++. ||.|++||+.
T Consensus 327 v~v~d~~~---~~~~~~~~-~~~~~~~~~~s~dg~-------------~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 327 IEVYDLKE---KKVQKSIP-VFDKPNTIALSPDGK-------------YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp EEEEETTT---TEEEEEEE-CSSSEEEEEECTTSS-------------EEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred EEEEECCC---CcEEEEec-CCCCCCeEEEcCCCC-------------EEEEEecCCCccccccccccccceEEEEEECC
Confidence 99999987 35555554 667899999999998 6666665 6799999998
Q ss_pred CCC
Q 012007 454 EHA 456 (473)
Q Consensus 454 ~~~ 456 (473)
+++
T Consensus 390 ~~~ 392 (433)
T 3bws_A 390 TDT 392 (433)
T ss_dssp TTE
T ss_pred CCc
Confidence 764
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2.6e-25 Score=214.54 Aligned_cols=244 Identities=14% Similarity=-0.003 Sum_probs=188.9
Q ss_pred CCEEEEeeCC------CcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCC---eEEEEeCCCCCeeeEEeec
Q 012007 133 GDLLYTGSDS------KNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG---KIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 133 g~~l~tg~~d------g~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~ 202 (473)
+..++.++.+ +.|++||.. .....+..|...|.+++|+|||++|++++.++ .|++||+.+++.....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~--- 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--- 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE---
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee---
Confidence 5666666554 799999976 44667778999999999999999999999885 9999999987643211
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE-EEeCCCC--EEEEEcCCCeeeEEeecCCCc
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKT--LKVWRISDCKCLESINAHDDA 279 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~--v~vwd~~~~~~~~~~~~~~~~ 279 (473)
.|...+.+++|+|+|++|+ +++.|+. |++||+.+++. ..+..|...
T Consensus 220 ------------------------------~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~ 268 (415)
T 2hqs_A 220 ------------------------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSN 268 (415)
T ss_dssp ------------------------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSC
T ss_pred ------------------------------cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCc
Confidence 2677899999999999887 6666665 99999988776 566778889
Q ss_pred eeEEEEcCCC-EEEEEeC-CC--cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC---CcEEEEe
Q 012007 280 INSVVAGFDS-LVFTGSA-DG--TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD---GLVNFWE 352 (473)
Q Consensus 280 v~~l~~~~~~-~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd 352 (473)
+.++.|+|++ .|++++. ++ .|.+||+..+. ...+..+...+.+++|+|+|++|++++.+ ..|.+||
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d 341 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 341 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEE
Confidence 9999999998 5666665 45 56667775321 12334566788999999999999888764 5899999
Q ss_pred cCCcccccceeecC-cceEEEEEecCCEEEEEeCCC---cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 353 CEKHLSHGGVLRGH-KMAVLCLAAAGNLVFSGSADR---NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 353 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+.++... .+..+ .....+++++|++|+.++.++ .|++||+.. .....+.+|.+.|.+++|+|...
T Consensus 342 ~~~~~~~--~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g----~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 342 LATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG----RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS----CCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCCCEE--EecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC----CcEEEeeCCCCCCcCCccccccc
Confidence 9875442 23333 344466778899999988877 799999875 44677889999999999999764
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=6.8e-25 Score=211.64 Aligned_cols=261 Identities=11% Similarity=0.036 Sum_probs=194.5
Q ss_pred CEEEEee----CCC----cEEEeeC--Cc--cc--cccccCcccEEEEEEeC--------------CCCEEEEEeCC---
Q 012007 134 DLLYTGS----DSK----NIRVWKN--LK--EF--SGFKSNSGLVKAIIISG--------------DSNKIFTGHQD--- 182 (473)
Q Consensus 134 ~~l~tg~----~dg----~i~vwd~--~~--~~--~~~~~h~~~V~~l~~s~--------------~~~~l~s~~~d--- 182 (473)
+++++|+ .|| .|+|||+ .. .+ ..+.+|...+..+++.+ .+..++.++.+
T Consensus 76 ~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~ 155 (415)
T 2hqs_A 76 DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGG 155 (415)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSS
T ss_pred CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCC
Confidence 4666775 467 8999998 53 23 34778888888777764 15566666654
Q ss_pred ---CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC--
Q 012007 183 ---GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK-- 257 (473)
Q Consensus 183 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg-- 257 (473)
+.|++||+....... +.+|...+.+++|+|+|++|++++.++
T Consensus 156 ~~~~~i~i~d~~g~~~~~---------------------------------l~~~~~~v~~~~~Spdg~~la~~s~~~~~ 202 (415)
T 2hqs_A 156 QFPYELRVSDYDGYNQFV---------------------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGR 202 (415)
T ss_dssp SCCEEEEEEETTSCSCEE---------------------------------EEEESSCEEEEEECTTSSEEEEEECTTSS
T ss_pred CccceEEEEcCCCCCCEE---------------------------------EeCCCCcceeeEEcCCCCEEEEEEecCCC
Confidence 799999997543221 113888999999999999999999885
Q ss_pred -CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEE-EEeCCCc--EEEEeCcccCCCcceeeeeeeccCCccEEEEEE
Q 012007 258 -TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF-TGSADGT--VKVWRRELQGKGTKHCLAQVLLKHENAVTALAV 332 (473)
Q Consensus 258 -~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 332 (473)
.|++||+.+++.. .+..|...+.+++|+|++ .|+ +++.++. |++||+..+. ...+..|...+.+++|
T Consensus 203 ~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 203 SALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-------IRQVTDGRSNNTEPTW 274 (415)
T ss_dssp CEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------EEECCCCSSCEEEEEE
T ss_pred cEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-------EEeCcCCCCcccceEE
Confidence 8999999998875 466688899999999998 455 6666665 8999986422 2445677889999999
Q ss_pred ccCCCEEEEeCC-CC--cEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCC---CcEEEEecCCCCceeEEE
Q 012007 333 NQESAVVYCGSS-DG--LVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSAD---RNICLWRREESGAHSCLA 404 (473)
Q Consensus 333 ~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~ 404 (473)
+|+|++|++++. ++ .|.+||+.++... .+..+...+ .+++++|++|+.++.+ ..|++||+.++ .. .
T Consensus 275 spdg~~l~~~s~~~g~~~i~~~d~~~~~~~--~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~---~~-~ 348 (415)
T 2hqs_A 275 FPDSQNLAFTSDQAGRPQVYKVNINGGAPQ--RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GV-Q 348 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTSSCCE--ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---CE-E
T ss_pred CCCCCEEEEEECCCCCcEEEEEECCCCCEE--EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC---CE-E
Confidence 999998887775 45 6777788765432 233344444 5667789999988764 58999999873 22 3
Q ss_pred EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCC---cEEEEEcCCC
Q 012007 405 VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDK---SVKVWRVSEH 455 (473)
Q Consensus 405 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg---~v~iW~i~~~ 455 (473)
.+..|. .+.+++|+|+++ +|++++.|+ .|++|++...
T Consensus 349 ~l~~~~-~~~~~~~spdg~-------------~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 349 VLSSTF-LDETPSLAPNGT-------------MVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp ECCCSS-SCEEEEECTTSS-------------EEEEEEEETTEEEEEEEETTSC
T ss_pred EecCCC-CcCCeEEcCCCC-------------EEEEEEcCCCccEEEEEECCCC
Confidence 455554 899999999998 788877776 7999998744
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=2.2e-25 Score=202.19 Aligned_cols=197 Identities=10% Similarity=0.041 Sum_probs=147.5
Q ss_pred eeecccEEEEEecCCEEEEee--CCCcEEEeeCC---ccccccccCcccEEEEEEeC---CCCEEEEEeCCCeEEEEeCC
Q 012007 120 VRKEGHIYSLAASGDLLYTGS--DSKNIRVWKNL---KEFSGFKSNSGLVKAIIISG---DSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 120 ~~h~~~V~~~~~~g~~l~tg~--~dg~i~vwd~~---~~~~~~~~h~~~V~~l~~s~---~~~~l~s~~~dg~i~vwd~~ 191 (473)
.+|...|.++ .+|+++.+++ .|+.|++|++. +.+..+.+|...++.++|++ ++.+|++|+.|++|+|||+.
T Consensus 133 ~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~ 211 (356)
T 2w18_A 133 SGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK 211 (356)
T ss_dssp EEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT
T ss_pred CCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC
Confidence 3455566665 3566666644 59999999973 44667778999999999999 77999999999999999999
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEE------------EEEeCCCCE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLL------------YSGSWDKTL 259 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l------------~s~s~dg~v 259 (473)
+++......... .+...+.+++|+|++.++ ++|+.|++|
T Consensus 212 TGk~l~tL~g~~-----------------------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI 262 (356)
T 2w18_A 212 TGQLLKKMHIDD-----------------------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL 262 (356)
T ss_dssp TCCEEEEEECCC--------------------------------CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred CCcEEEEEcCCC-----------------------------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence 998665543110 023467888999998876 668899999
Q ss_pred EEEEcCCCeeeEEe-----ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE-EEEEc
Q 012007 260 KVWRISDCKCLESI-----NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT-ALAVN 333 (473)
Q Consensus 260 ~vwd~~~~~~~~~~-----~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~ 333 (473)
++||..+++.+..+ .+|...+.+..++ ..++++++.|++|+|||+..+. ....+.+|...+. .++|+
T Consensus 263 klWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk------~l~tL~gH~~~vvs~vafS 335 (356)
T 2w18_A 263 IVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQ------CTALLPPVSDQHWSFVKWS 335 (356)
T ss_dssp EEEETTTTEEEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCS------EEEEECCC--CCCCEEEEC
T ss_pred EEEECCCCEEEEEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCc------EEEEecCCCCCeEEEEEEC
Confidence 99999999988765 3565555444443 3488999999999999997432 4556777877655 68999
Q ss_pred cCCCEEEEeCCCCcEEEEec
Q 012007 334 QESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 334 ~~~~~l~~~~~dg~i~iwd~ 353 (473)
|+|++|++|+.|++|+|||+
T Consensus 336 PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSSSEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEECCCcEEEecC
Confidence 99999999999999999985
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=5.1e-24 Score=200.00 Aligned_cols=272 Identities=12% Similarity=0.229 Sum_probs=186.5
Q ss_pred EEEEeeCCCcEEEeeCC--cc--ccccccCcccEEEEEEeCCCCEEEEEeCC-CeEEEEeCC--CCCeeeEEeecccccc
Q 012007 135 LLYTGSDSKNIRVWKNL--KE--FSGFKSNSGLVKAIIISGDSNKIFTGHQD-GKIRIWKVS--RKNASVHKRVGSLPTF 207 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~--~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g~i~vwd~~--~~~~~~~~~~~~~~~~ 207 (473)
++++++.|+.|++|+.. .. ......|...+.+++|+|++++|++++.+ +.|++|++. ++........
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~------ 80 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES------ 80 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc------
Confidence 34454779999999864 21 22223477789999999999999998887 999999997 4443222111
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcC---CCeeeEEeecCCCceeEE
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRIS---DCKCLESINAHDDAINSV 283 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~---~~~~~~~~~~~~~~v~~l 283 (473)
.....+.+++|+|++++|++++. ++.|.+||+. ..+.+..+..+ ..+.++
T Consensus 81 -------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~ 134 (343)
T 1ri6_A 81 -------------------------ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSA 134 (343)
T ss_dssp -------------------------ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCC
T ss_pred -------------------------ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEE
Confidence 12337889999999998877765 7889999994 44455555543 458889
Q ss_pred EEcCCC-EEEEEe-CCCcEEEEeCcccCCCcceeee--eeeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecCC--c
Q 012007 284 VAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHCLA--QVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEK--H 356 (473)
Q Consensus 284 ~~~~~~-~l~s~~-~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~--~ 356 (473)
+|+|++ .+++++ .++.|.+||+...+. ..... .........+..++|+|++++|++ +..++.|.+||+.. +
T Consensus 135 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g 212 (343)
T 1ri6_A 135 NISPDNRTLWVPALKQDRICLFTVSDDGH--LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG 212 (343)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSC--EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred EECCCCCEEEEecCCCCEEEEEEecCCCc--eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 999998 666666 899999999974221 11111 122223457889999999997654 45889999999953 2
Q ss_pred ccc-cceee----cC--cce--EEEEEecCCEEEE-EeCCCcEEEEecCC-CCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 357 LSH-GGVLR----GH--KMA--VLCLAAAGNLVFS-GSADRNICLWRREE-SGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 357 ~~~-~~~~~----~~--~~~--v~~~~~~~~~l~s-~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
... ..... ++ ... ..++++++++|++ +..++.|.+|++.. .+....+..+..+.. +.+++|+|+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~-- 289 (343)
T 1ri6_A 213 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGK-- 289 (343)
T ss_dssp CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSS--
T ss_pred cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCC--
Confidence 110 11111 11 112 3567778887774 45789999999983 122455666655544 89999999998
Q ss_pred cccccCCCccEEEEEee-CCCcEEEEEcCC
Q 012007 426 HEYHQKGDQRWTVYSGS-LDKSVKVWRVSE 454 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~ 454 (473)
+|++++ .|+.|.+|++..
T Consensus 290 -----------~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 290 -----------YLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp -----------EEEEECTTTCEEEEEEEET
T ss_pred -----------EEEEecCCCCeEEEEEEcC
Confidence 566665 689999997653
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=6.1e-23 Score=191.93 Aligned_cols=275 Identities=8% Similarity=0.116 Sum_probs=190.5
Q ss_pred CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCe-eeEEeeccccccc
Q 012007 133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVSRKNA-SVHKRVGSLPTFK 208 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~ 208 (473)
+..+++++.++.|++||.. +....+..+...+ +++|+|++++|++++. ++.|.+||+.+++. .....
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-------- 80 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-------- 80 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE--------
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc--------
Confidence 3457788889999999965 3334444555666 9999999997777666 89999999988765 22221
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC---CEEEEEcCCCeeeEEeecCCCceeEEEE
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK---TLKVWRISDCKCLESINAHDDAINSVVA 285 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~v~~l~~ 285 (473)
.+.....+++|+|++++|+++..++ .|.+||+.+++.+..+..+ ....+++|
T Consensus 81 ------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~ 135 (331)
T 3u4y_A 81 ------------------------EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAI 135 (331)
T ss_dssp ------------------------ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEE
T ss_pred ------------------------cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEE
Confidence 1444455599999999999655553 8999999999998887754 45689999
Q ss_pred cCCC--EEEEEeCCCc-EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE-EEeCCCCcEEEEecCCccc---
Q 012007 286 GFDS--LVFTGSADGT-VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV-YCGSSDGLVNFWECEKHLS--- 358 (473)
Q Consensus 286 ~~~~--~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~--- 358 (473)
+|++ ++++...++. |.+|++...+...... .........+..++|+|+++++ +++..++.|.+||+.++..
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL 213 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEeecC--CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce
Confidence 9998 4445556688 9999987433211111 1222445568999999999865 4555789999999987654
Q ss_pred ccceeecCcceEEEEEecCCEEEEEe-CCCcEEEEecCCCCceeEEEEecCC----CCc---eeEEEEecCCCCCccccc
Q 012007 359 HGGVLRGHKMAVLCLAAAGNLVFSGS-ADRNICLWRREESGAHSCLAVLTGH----TGP---VKCLAVEEDRDHDHEYHQ 430 (473)
Q Consensus 359 ~~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h----~~~---V~~l~~~~~~~~~~~~~~ 430 (473)
......+....-.+++++|++|+++. .++.|.+||+.++.. ..+..+..+ ... ...++|+|+++.
T Consensus 214 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~------ 286 (331)
T 3u4y_A 214 LNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETK------ 286 (331)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSE------
T ss_pred eeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCE------
Confidence 32222222333467788999776654 578899999987422 223333322 222 356899999982
Q ss_pred CCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 431 KGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 431 ~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+++++..++.|.+|++....
T Consensus 287 ------l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 287 ------LFISANISRELKVFTISGKV 306 (331)
T ss_dssp ------EEEEETTTTEEEEEETTSCE
T ss_pred ------EEEecCCCCcEEEEEecCCc
Confidence 44556667799999998654
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.6e-23 Score=192.05 Aligned_cols=246 Identities=12% Similarity=0.079 Sum_probs=179.0
Q ss_pred EeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC-CCeeeEEeeccccccceeEeecC
Q 012007 138 TGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR-KNASVHKRVGSLPTFKDYVKSSV 215 (473)
Q Consensus 138 tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 215 (473)
.++.|+.|++||.. .....+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~-------------- 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG-------------- 81 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT--------------
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc--------------
Confidence 34678999999976 34445667889999999999999999976 78999999988 654321110
Q ss_pred CCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe--CCCCEEEEEc--CCCeeeEEeecCCCceeEEEEcCCC-E
Q 012007 216 NPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRI--SDCKCLESINAHDDAINSVVAGFDS-L 290 (473)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s--~dg~v~vwd~--~~~~~~~~~~~~~~~v~~l~~~~~~-~ 290 (473)
.+...+.+++|+|++++|++++ .++.+.||.+ .+++ ...+..+ ..+..+.|+|++ .
T Consensus 82 -----------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~ 142 (297)
T 2ojh_A 82 -----------------FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKS 142 (297)
T ss_dssp -----------------TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSE
T ss_pred -----------------cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCE
Confidence 1346788999999999999999 3345555554 4444 3444433 348889999998 4
Q ss_pred EE-EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCCcccccceeecCcc
Q 012007 291 VF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEKHLSHGGVLRGHKM 368 (473)
Q Consensus 291 l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (473)
|+ ++..++.+++|+++.... ....+..+...+.+++|+|++++|+.++ .++.+++|++.........+..|..
T Consensus 143 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 217 (297)
T 2ojh_A 143 FTYCGIRDQVFDIYSMDIDSG-----VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY 217 (297)
T ss_dssp EEEEEEETTEEEEEEEETTTC-----CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE
T ss_pred EEEEECCCCceEEEEEECCCC-----cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc
Confidence 44 788899999999753221 1244556778899999999999877655 5899999988632223344555555
Q ss_pred eEE--EEEecCCEEEEEeCC-----------CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 369 AVL--CLAAAGNLVFSGSAD-----------RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 369 ~v~--~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.+. ++++++++|++++.+ +.|.+||+.++. ...+..+.+|...|.+++|+|+++
T Consensus 218 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~ 284 (297)
T 2ojh_A 218 GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN-VETLFDLFGGQGTMNSPNWSPDGD 284 (297)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS-CEEEEEEEESTTTSCSCCBCTTSS
T ss_pred ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC-ceeeeccCCCCcccccceECCCCC
Confidence 554 455679999888766 569999998743 344555667888999999999998
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=4e-23 Score=214.78 Aligned_cols=271 Identities=10% Similarity=0.068 Sum_probs=198.2
Q ss_pred EEEecCCEEEEeeC-CC-----cEEEeeCCcc--ccccccCc------------------------ccEEEEEEeCCCCE
Q 012007 128 SLAASGDLLYTGSD-SK-----NIRVWKNLKE--FSGFKSNS------------------------GLVKAIIISGDSNK 175 (473)
Q Consensus 128 ~~~~~g~~l~tg~~-dg-----~i~vwd~~~~--~~~~~~h~------------------------~~V~~l~~s~~~~~ 175 (473)
++++||++|++++. |+ .|++||.... ...+..+. ..|.+++|+|||++
T Consensus 43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~ 122 (741)
T 2ecf_A 43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQR 122 (741)
T ss_dssp EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSE
T ss_pred eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCE
Confidence 56678999999998 88 8999997532 22232222 34889999999999
Q ss_pred EEEEeCCCeEEEEeCCCC---CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 176 IFTGHQDGKIRIWKVSRK---NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 176 l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
|++++. +.|++||+.++ ..... ..|...+.+++|+|||++|+.
T Consensus 123 l~~~~~-~~i~~~d~~~~~~~~~~~l---------------------------------~~~~~~~~~~~~SPDG~~la~ 168 (741)
T 2ecf_A 123 LLFPLG-GELYLYDLKQEGKAAVRQL---------------------------------THGEGFATDAKLSPKGGFVSF 168 (741)
T ss_dssp EEEEET-TEEEEEESSSCSTTSCCBC---------------------------------CCSSSCEEEEEECTTSSEEEE
T ss_pred EEEEeC-CcEEEEECCCCCcceEEEc---------------------------------ccCCcccccccCCCCCCEEEE
Confidence 999886 89999999877 32211 126678999999999999999
Q ss_pred EeCCCCEEEEEcCCCeeeEEeecCCCc----------------eeEEEEcCCC-EEEEEeCCC-----------------
Q 012007 253 GSWDKTLKVWRISDCKCLESINAHDDA----------------INSVVAGFDS-LVFTGSADG----------------- 298 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~~~~~~----------------v~~l~~~~~~-~l~s~~~dg----------------- 298 (473)
++ ++.|++||+.+++.......+... +..+.|+|++ .|++++.|+
T Consensus 169 ~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~ 247 (741)
T 2ecf_A 169 IR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTD 247 (741)
T ss_dssp EE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEE
T ss_pred Ee-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCccc
Confidence 88 468999999998876655444332 4779999998 677776655
Q ss_pred ----------------cEEEEeCcc-cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-----CCcEEEEecCCc
Q 012007 299 ----------------TVKVWRREL-QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-----DGLVNFWECEKH 356 (473)
Q Consensus 299 ----------------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----dg~i~iwd~~~~ 356 (473)
.|.+||+.. +.. . .......|...+..++| |||++|++++. +..|++||+.++
T Consensus 248 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~---~-~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 248 VIEQRYPAAGDANVQVKLGVISPAEQAQT---Q-WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEEEECCBTTSCCCEEEEEEECSSTTCCC---E-EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred ceEeecCCCCCCCCeeEEEEEECCCCCce---E-EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence 788888864 321 1 11111257788999999 99999987653 567999999876
Q ss_pred ccccceeecCcc------eEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEE-EEecCCCCCcccc
Q 012007 357 LSHGGVLRGHKM------AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCL-AVEEDRDHDHEYH 429 (473)
Q Consensus 357 ~~~~~~~~~~~~------~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~~~~~~ 429 (473)
... .....+.. ....++++|+++++++.||.++||.++..+ . ...+..|...|..+ .|+|+++.
T Consensus 323 ~~~-~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~----- 393 (741)
T 2ecf_A 323 QQR-VLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGL----- 393 (741)
T ss_dssp CEE-EEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTE-----
T ss_pred ceE-EEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCE-----
Confidence 433 23333321 245778899999999999988888876322 3 66777888888887 59999973
Q ss_pred cCCCccEEEEEeeCCC--cEEEEEcCC
Q 012007 430 QKGDQRWTVYSGSLDK--SVKVWRVSE 454 (473)
Q Consensus 430 ~~~~~~~~l~s~s~Dg--~v~iW~i~~ 454 (473)
++++++.|+ .++||++..
T Consensus 394 -------l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 394 -------AYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp -------EEEEECSSCTTCBEEEEEET
T ss_pred -------EEEEEeCCCCceEEEEEEEc
Confidence 445666666 899999875
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=3.9e-22 Score=198.30 Aligned_cols=301 Identities=12% Similarity=0.075 Sum_probs=207.9
Q ss_pred ceeeee-eecccEEEEEecCCEEEEeeCCCcEEEeeC--C--ccccccccCcccEEEEEEeC----CCCEEEEEeC-CCe
Q 012007 115 LIGSIV-RKEGHIYSLAASGDLLYTGSDSKNIRVWKN--L--KEFSGFKSNSGLVKAIIISG----DSNKIFTGHQ-DGK 184 (473)
Q Consensus 115 ~~~~l~-~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~--~--~~~~~~~~h~~~V~~l~~s~----~~~~l~s~~~-dg~ 184 (473)
++.++. +|.-+...++++|++|++++.|++|++||+ . +.+..+. +...+..++|+| ||++|++++. +++
T Consensus 171 ~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~ 249 (543)
T 1nir_A 171 IVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQ 249 (543)
T ss_dssp EEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred EEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCe
Confidence 455555 444344556778999999999999999998 3 2344444 455689999999 9999999885 899
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCE-EEEEeCCCCEEEEE
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL-LYSGSWDKTLKVWR 263 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~s~dg~v~vwd 263 (473)
|.+||..+.+............. ...+.....+..+.+++++.. +++...++.|.+||
T Consensus 250 v~v~D~~t~~~~~~i~~~g~~~~---------------------~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd 308 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRGMTVD---------------------TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 308 (543)
T ss_dssp EEEEETTTCCEEEEEECCEECSS---------------------SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EEEEeccccccceeecccCcccC---------------------ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEE
Confidence 99999988876554432110000 000012337899999997664 55667889999999
Q ss_pred cCCCeeeE--EeecCCCceeEEEEcCCC-EEE-EEeCCCcEEEEeCcccCCCcceeeeeeec----cCCccEEEEEEccC
Q 012007 264 ISDCKCLE--SINAHDDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHCLAQVLL----KHENAVTALAVNQE 335 (473)
Q Consensus 264 ~~~~~~~~--~~~~~~~~v~~l~~~~~~-~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~v~~l~~~~~ 335 (473)
+.+.+.+. .+. +...+..+.|+|++ +++ ++..+++|.+||+..+. +...+. .|......+ ++|+
T Consensus 309 ~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~------l~~~i~~g~~ph~g~g~~~-~~p~ 380 (543)
T 1nir_A 309 YKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR------LSALVDVGKTPHPGRGANF-VHPK 380 (543)
T ss_dssp CTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE------EEEEEECSSSBCCTTCEEE-EETT
T ss_pred ecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe------EEEeeccCCCCCCCCCccc-CCCC
Confidence 98866544 443 56678889999998 454 45568999999997432 222222 355444333 4676
Q ss_pred -CCEEEEeC-CCCcEEEEecCCc------ccccceeecCcceE--EEEEecCCEEEEEe-------CCCcEEEEecCCCC
Q 012007 336 -SAVVYCGS-SDGLVNFWECEKH------LSHGGVLRGHKMAV--LCLAAAGNLVFSGS-------ADRNICLWRREESG 398 (473)
Q Consensus 336 -~~~l~~~~-~dg~i~iwd~~~~------~~~~~~~~~~~~~v--~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~ 398 (473)
+.+++++. .|++|.+||+.+. ......+.+|...+ ..++|++++|++++ .+++|.+||+.+..
T Consensus 381 ~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 381 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 66666665 5899999999862 34445666776543 55678899999987 27799999999854
Q ss_pred ce-eEEEE-----ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe----eCCCcEEEEEcCCCCC
Q 012007 399 AH-SCLAV-----LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG----SLDKSVKVWRVSEHAP 457 (473)
Q Consensus 399 ~~-~~~~~-----~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~----s~Dg~v~iW~i~~~~~ 457 (473)
.. +.+.. +..+...+..++|+|+++. ++++. +.|+.|.|||..+++.
T Consensus 461 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~------------~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 461 AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE------------VWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp SCCEEECHHHHHCCCSSCCEEEEEEECSSSSE------------EEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CCeEEeechhhcccCCCCCceEeccCCCCCCE------------EEEEeecCCCCCCeEEEEECCCceE
Confidence 33 22111 2456778999999999983 33332 2589999999988763
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1.1e-21 Score=183.60 Aligned_cols=268 Identities=9% Similarity=0.022 Sum_probs=188.2
Q ss_pred CEEEEeeCCCcEEEeeCCc--cccccccCc-c-cEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 134 DLLYTGSDSKNIRVWKNLK--EFSGFKSNS-G-LVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~~--~~~~~~~h~-~-~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
++|++++.++.|++||... .+..+.... . .+..++|+|++++++ ++..++.|.+||+.+++...........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---
Confidence 5789999999999999753 333333222 1 588999999998765 4556789999999887754433321100
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe------------CCCCEEEEEcCCCeeeEEeecC
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS------------WDKTLKVWRISDCKCLESINAH 276 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s------------~dg~v~vwd~~~~~~~~~~~~~ 276 (473)
.|...+.+++|+|++++|+++. .++.|.+||+.+++.+..+..
T Consensus 79 ------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~- 133 (337)
T 1pby_B 79 ------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA- 133 (337)
T ss_dssp ------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred ------------------------cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence 0223567899999999999886 579999999999998887765
Q ss_pred CCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC---------
Q 012007 277 DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG--------- 346 (473)
Q Consensus 277 ~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--------- 346 (473)
...+.+++++|++ +++++ ++.|.+||+.... ....+..+.. ...+.|+|++..++..+.++
T Consensus 134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~------~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT------LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE------EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc------Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeec
Confidence 4567889999998 56666 6899999987432 1122222210 01237889888766554333
Q ss_pred ---------------cEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC
Q 012007 347 ---------------LVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH 409 (473)
Q Consensus 347 ---------------~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h 409 (473)
.|.+||+.+..........+...+ .++++++++|+++ ++.|.+||+.+ .+.+..+..
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~---~~~~~~~~~- 278 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK---NASIKRVPL- 278 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT---TEEEEEEEC-
T ss_pred cccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC---CcCcceecC-
Confidence 468999987654322233344344 5667789999888 78999999987 345555543
Q ss_pred CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 410 ~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
...+.+++|+|+++ +|++++.|+.|++||+.+++.
T Consensus 279 ~~~~~~~~~s~dg~-------------~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 279 PHSYYSVNVSTDGS-------------TVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp SSCCCEEEECTTSC-------------EEEEESBSSEEEEEETTTCCE
T ss_pred CCceeeEEECCCCC-------------EEEEEcCCCcEEEEECcCCcE
Confidence 34678999999998 778888899999999987753
No 136
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=3.2e-21 Score=181.59 Aligned_cols=267 Identities=11% Similarity=0.175 Sum_probs=178.7
Q ss_pred CCcEEEeeCCc---ccc--ccccCcccEEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCCeeeEEeeccccccceeEee
Q 012007 142 SKNIRVWKNLK---EFS--GFKSNSGLVKAIIISGDSNKIFTGHQ---DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKS 213 (473)
Q Consensus 142 dg~i~vwd~~~---~~~--~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 213 (473)
++.|.+|++.. .+. ....+...+..++|+|+|+ |++++. ++.|++|++.++........
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~------------ 81 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV------------ 81 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE------------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee------------
Confidence 55677875431 111 2234556788899999998 665554 68999999976553222111
Q ss_pred cCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCC-C--eeeEEeecC---------CCce
Q 012007 214 SVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISD-C--KCLESINAH---------DDAI 280 (473)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~-~--~~~~~~~~~---------~~~v 280 (473)
..+...+..++|+|++++|++++ .++.|.+|++.. + +.+..+... ...+
T Consensus 82 ------------------~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~ 143 (347)
T 3hfq_A 82 ------------------VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHI 143 (347)
T ss_dssp ------------------EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCE
T ss_pred ------------------ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCc
Confidence 12667788999999999999888 678999999962 2 333333321 2247
Q ss_pred eEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecCC--c
Q 012007 281 NSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEK--H 356 (473)
Q Consensus 281 ~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~--~ 356 (473)
.+++++|++ ++++...++.|.+|++...+. ..............+..++|+|+|++|++ ...++.|.+|++.. +
T Consensus 144 ~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g 221 (347)
T 3hfq_A 144 HYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ--LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG 221 (347)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECTTSC--EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred eEEEECCCCcEEEEeCCCCEEEEEEECCCCc--EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 889999998 555666688999999973221 11111112223346788999999996655 56788999999874 2
Q ss_pred cc-ccceeecC--------cceEEEEEecCCEEE-EEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCc
Q 012007 357 LS-HGGVLRGH--------KMAVLCLAAAGNLVF-SGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426 (473)
Q Consensus 357 ~~-~~~~~~~~--------~~~v~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 426 (473)
.. ........ ...-.+++++|++|+ +...++.|.+|++...+....+..+..+...+.+++|+|+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~--- 298 (347)
T 3hfq_A 222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA--- 298 (347)
T ss_dssp EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS---
T ss_pred ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC---
Confidence 11 11111111 122366778899774 556689999999974334566777777777789999999998
Q ss_pred ccccCCCccEEEEEeeC-CCcEEEEEcCC
Q 012007 427 EYHQKGDQRWTVYSGSL-DKSVKVWRVSE 454 (473)
Q Consensus 427 ~~~~~~~~~~~l~s~s~-Dg~v~iW~i~~ 454 (473)
+|++++. ++.|.+|++..
T Consensus 299 ----------~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 299 ----------FVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp ----------EEEEEETTTTEEEEEEECT
T ss_pred ----------EEEEEEcCCCcEEEEEEeC
Confidence 6666654 58999997754
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=1.2e-20 Score=177.76 Aligned_cols=265 Identities=8% Similarity=0.032 Sum_probs=186.7
Q ss_pred EEEecCCEEEEeeC-------CCcEEEeeCCc--cccccccCcccEEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCeee
Q 012007 128 SLAASGDLLYTGSD-------SKNIRVWKNLK--EFSGFKSNSGLVKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNASV 197 (473)
Q Consensus 128 ~~~~~g~~l~tg~~-------dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~ 197 (473)
+++++|++|++++. ++.|.+||... .+..+. ....+..++|+++|++++.+ ..++.|.+||..+++...
T Consensus 47 ~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 125 (353)
T 3vgz_A 47 AYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKG 125 (353)
T ss_dssp EEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEE
Confidence 45567888888774 46899999653 233333 23457889999999966555 557999999999887655
Q ss_pred EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe--CCCCEEEEEcCCCeeeEEeec
Q 012007 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRISDCKCLESINA 275 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s--~dg~v~vwd~~~~~~~~~~~~ 275 (473)
........... ......+.+++|+|+++++++++ .++.|.+||+.+++.+..+..
T Consensus 126 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~ 182 (353)
T 3vgz_A 126 RLVLDDRKRTE-----------------------EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN 182 (353)
T ss_dssp EEESCCCCCCS-----------------------SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC
T ss_pred EEecCCCcccc-----------------------ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC
Confidence 44322100000 00111367899999999888876 478899999999999988876
Q ss_pred CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CCcEEEEec
Q 012007 276 HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DGLVNFWEC 353 (473)
Q Consensus 276 ~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~ 353 (473)
+...+.++.+++++ .+++++.++.|.+||+..... .........++...+..++|+|+++++++++. ++.|.+||.
T Consensus 183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 260 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT 260 (353)
T ss_dssp CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET
T ss_pred CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 66678899999987 788888999999999874321 01111111134567889999999997766654 589999999
Q ss_pred CCcccccceeecCcceEEEEEecCCEEEEEe-CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 354 EKHLSHGGVLRGHKMAVLCLAAAGNLVFSGS-ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 354 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.++........ ......++++++++++++. .++.|.+||..+ .+.+..+... ..+.+++|+|+++
T Consensus 261 ~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~-~~~~~~~~s~dg~ 326 (353)
T 3vgz_A 261 RNGNILAKVAA-PESLAVLFNPARNEAYVTHRQAGKVSVIDAKS---YKVVKTFDTP-THPNSLALSADGK 326 (353)
T ss_dssp TTCCEEEEEEC-SSCCCEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEEEECC-SEEEEEEECTTSC
T ss_pred CCCcEEEEEEc-CCCceEEECCCCCEEEEEECCCCeEEEEECCC---CeEEEEEecC-CCCCeEEEcCCCC
Confidence 87654433332 3334577888998666555 689999999988 4555555543 4679999999998
No 138
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=2.3e-21 Score=187.59 Aligned_cols=313 Identities=12% Similarity=0.099 Sum_probs=192.0
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCCcc------------cc-----ccccCcccEEEEEEeCCCCEEE----EEeCCC
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKE------------FS-----GFKSNSGLVKAIIISGDSNKIF----TGHQDG 183 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~~~------------~~-----~~~~h~~~V~~l~~s~~~~~l~----s~~~dg 183 (473)
...++++++.++++|+.|+ |+||+.... +. ....+.+.|.+++|+|++++|+ +|+.|+
T Consensus 40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred cEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 3457788899999999988 889863211 00 0122456799999999999999 788899
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEE
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVW 262 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vw 262 (473)
.|+|||+.+.......... .+ .......+|...|.+++|+|+ +.+|++++.||+|++|
T Consensus 119 ~v~iwd~~~~~~~~~~~~~----------------~~-----~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw 177 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKR----------------PF-----AYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL 177 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCC----------------CS-----EEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred eEEEEEccccccCCcCCcc----------------ee-----eeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence 9999998654100000000 00 000111248999999999997 8899999999999999
Q ss_pred EcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeee---eccCCccEEEEEEccCCCE
Q 012007 263 RISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQV---LLKHENAVTALAVNQESAV 338 (473)
Q Consensus 263 d~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~ 338 (473)
|++++..+.....|...|.+++|+|++ +|++|+.||.|++||++ +.. ....... ...|...|.+++|++++.+
T Consensus 178 D~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~--~~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 178 QVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE--KKVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp EESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE--EEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred EcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc--cccccCCcccCCCCceeEEEEEEecCceE
Confidence 999998877777899999999999998 89999999999999987 211 1111111 1124458999999998877
Q ss_pred EEEe-CCCC------cEEEEecCCcccc-cceee----------cCcceEEEEE--ecCCEEEEEe-CCCcEEEEecCCC
Q 012007 339 VYCG-SSDG------LVNFWECEKHLSH-GGVLR----------GHKMAVLCLA--AAGNLVFSGS-ADRNICLWRREES 397 (473)
Q Consensus 339 l~~~-~~dg------~i~iwd~~~~~~~-~~~~~----------~~~~~v~~~~--~~~~~l~s~~-~dg~i~iwd~~~~ 397 (473)
+++. ..|| .+++|++++.... ...+. +.......+. .+.+++++++ ..+.|.|+.....
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~ 334 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSD 334 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTT
T ss_pred EEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCC
Confidence 7543 3333 3899999754211 00100 1111222232 4545555544 4455666664432
Q ss_pred Cc-eeEEEE---------e--cCCCCceeEEEEecCCCCCcccccCC--CccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 398 GA-HSCLAV---------L--TGHTGPVKCLAVEEDRDHDHEYHQKG--DQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 398 ~~-~~~~~~---------~--~~h~~~V~~l~~~~~~~~~~~~~~~~--~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
+. +..... + .+.......+++.-.........+.. ....+|..-+.||.+..|.+-...+..+.+
T Consensus 335 ~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~~~~~~~~~ 413 (434)
T 2oit_A 335 QINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMINQNPGVKSL 413 (434)
T ss_dssp SSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEECSTTCCCC
T ss_pred CCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEecCcccccc
Confidence 11 111110 0 11222345555544333110000000 122378888899999999998744444443
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=2e-22 Score=208.87 Aligned_cols=283 Identities=8% Similarity=0.039 Sum_probs=186.9
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcc---cEEEEEEeCCCCEEEEEeCC---------CeEEEEeCCCC
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSG---LVKAIIISGDSNKIFTGHQD---------GKIRIWKVSRK 193 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~---~V~~l~~s~~~~~l~s~~~d---------g~i~vwd~~~~ 193 (473)
+++++|+++++ +.||+|++||.. +....+..|.. .|.+++|+|||++|++++.+ +.|++||+.++
T Consensus 23 ~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 101 (723)
T 1xfd_A 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (723)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC
Confidence 45567787766 678999999965 33344455554 49999999999999999874 78889999887
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 273 (473)
+...... .. +|...+..++|+|||++|+.++. +.|++||+.+++.....
T Consensus 102 ~~~~l~~---~~---------------------------~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 102 DPQSLDP---PE---------------------------VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp CCEECCC---TT---------------------------CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred ceEeccC---Cc---------------------------cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence 6411110 00 25556889999999999999986 79999999988877666
Q ss_pred ecCCCce------------------eEEEEcCCC-EEEEEeCCC----------------------------------cE
Q 012007 274 NAHDDAI------------------NSVVAGFDS-LVFTGSADG----------------------------------TV 300 (473)
Q Consensus 274 ~~~~~~v------------------~~l~~~~~~-~l~s~~~dg----------------------------------~i 300 (473)
..+...+ .++.|+|++ .|++++.|+ .|
T Consensus 151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 5544333 789999998 677766443 78
Q ss_pred EEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC----CCcEEEEecCCcccccceeecCcce------E
Q 012007 301 KVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS----DGLVNFWECEKHLSHGGVLRGHKMA------V 370 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~------v 370 (473)
++||+..+..............+...+..++|+|||++|++... +..|++||+.++.........+... .
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 89998643210000000111224678999999999998876543 3579999998765332222222222 4
Q ss_pred EEEEecCCEEEE--EeCCC------cEEEEecCCCCceeEEEEecCCCCceeE-EEEecCCCCCcccccCCCccEEEEEe
Q 012007 371 LCLAAAGNLVFS--GSADR------NICLWRREESGAHSCLAVLTGHTGPVKC-LAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 371 ~~~~~~~~~l~s--~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
..++++|+.|+. +..++ .|.+||...++...+...+..+...+.. ++|+|+++ .|+..
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~-------------~l~~~ 377 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN-------------KIYFL 377 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT-------------EEEEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC-------------EEEEE
Confidence 578889986664 45666 4666763232210013334433344554 69999998 56544
Q ss_pred -eCC--CcEEEEEcCCC
Q 012007 442 -SLD--KSVKVWRVSEH 455 (473)
Q Consensus 442 -s~D--g~v~iW~i~~~ 455 (473)
..+ +.++||++...
T Consensus 378 ~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 378 STEDLPRRRQLYSANTV 394 (723)
T ss_dssp ESSSCTTCCEEEEECSS
T ss_pred EcCCCCcceEEEEEeCC
Confidence 444 88999999753
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=3.8e-21 Score=198.76 Aligned_cols=268 Identities=9% Similarity=0.040 Sum_probs=188.2
Q ss_pred CCEEEEeeCCCcEEEeeCCcc-c--cccccCc-----------------ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 133 GDLLYTGSDSKNIRVWKNLKE-F--SGFKSNS-----------------GLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~-~--~~~~~h~-----------------~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
|+.+++++.|+ | +||.... . ..+..|. ..|.+++|+|| ++++.+ .++.|++||+.+
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~ 110 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA 110 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCC
Confidence 77777778788 8 9996532 2 3333332 46999999999 666655 469999999987
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-----C
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-----C 267 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-----~ 267 (473)
++..... .+...+.+++|+|+|++|+++ .|+.|++||+.+ +
T Consensus 111 ~~~~~l~---------------------------------~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 111 RKVTYLF---------------------------------DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp TEEEEEE---------------------------------CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred CceEEcc---------------------------------CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 7542221 255678889999999999986 579999999998 7
Q ss_pred eeeEEeecCCCc--------------eeEEEEcCCC-EEEEEe---------------------------------CCCc
Q 012007 268 KCLESINAHDDA--------------INSVVAGFDS-LVFTGS---------------------------------ADGT 299 (473)
Q Consensus 268 ~~~~~~~~~~~~--------------v~~l~~~~~~-~l~s~~---------------------------------~dg~ 299 (473)
+.......+... +.++.|+|++ .|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 766554444332 4889999998 677776 4467
Q ss_pred EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-----cEEEEecCCcccccceee-cCcc-----
Q 012007 300 VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-----LVNFWECEKHLSHGGVLR-GHKM----- 368 (473)
Q Consensus 300 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~-~~~~----- 368 (473)
|.+||+..+. .........|...+..++|+|||++|++++.++ .|.+||+.++........ .+..
T Consensus 237 l~~~d~~~~~----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 237 VGIYHLATGK----TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp EEEEETTTTE----EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred EEEEECCCCc----eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 9999986422 111112235677899999999999999877665 899999987633222222 2221
Q ss_pred eEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeE-EEEecCCCCCcccccCCCccEEEEEeeCCC
Q 012007 369 AVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKC-LAVEEDRDHDHEYHQKGDQRWTVYSGSLDK 445 (473)
Q Consensus 369 ~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg 445 (473)
....+++ +|++|+++..|+.++||++... ...+..+..|...+.. ++|+|+++. ++++++.++
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~--~~~~~~l~~~~~~v~~~~~~spdg~~------------l~~~~~~~~ 378 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT--GRLIRQVTKGEWEVTNFAGFDPKGTR------------LYFESTEAS 378 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETT--SCEEEECCCSSSCEEEEEEECTTSSE------------EEEEESSSC
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECC--CCEEEecCCCCeEEEeeeEEcCCCCE------------EEEEecCCC
Confidence 2257888 9999999999999999988731 3456677778878877 899999872 445555555
Q ss_pred ----cEEEEEcCCCC
Q 012007 446 ----SVKVWRVSEHA 456 (473)
Q Consensus 446 ----~v~iW~i~~~~ 456 (473)
.|..|++..+.
T Consensus 379 ~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 379 PLERHFYCIDIKGGK 393 (706)
T ss_dssp TTCBEEEEEETTCCC
T ss_pred CceEEEEEEEcCCCC
Confidence 56666665543
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=1.4e-20 Score=202.51 Aligned_cols=314 Identities=10% Similarity=0.027 Sum_probs=213.6
Q ss_pred cceeeeeeecccEEEEEe--cCCEEEEeeCC------CcEEEeeCC-ccccccccCcccE-------EEEEEeCCCCEEE
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDS------KNIRVWKNL-KEFSGFKSNSGLV-------KAIIISGDSNKIF 177 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l~tg~~d------g~i~vwd~~-~~~~~~~~h~~~V-------~~l~~s~~~~~l~ 177 (473)
+....|.+|.+.|.++++ ||++||+++.+ ..|++|+.. .....+..|...+ ..++|+|||++++
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~ 122 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLII 122 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEE
Confidence 445677889888877665 69999988643 378999875 3456778888888 9999999999777
Q ss_pred EEeCC------CeEEEEeCCCCCeeeEEeecc-----------------cc-c---------------------------
Q 012007 178 TGHQD------GKIRIWKVSRKNASVHKRVGS-----------------LP-T--------------------------- 206 (473)
Q Consensus 178 s~~~d------g~i~vwd~~~~~~~~~~~~~~-----------------~~-~--------------------------- 206 (473)
+++.+ ..|++|++.++.......... .+ .
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 77754 458888876654321110000 00 0
Q ss_pred ----------cceeE-eecCCCc-ceEEEee-cceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe
Q 012007 207 ----------FKDYV-KSSVNPK-NYVEVRR-NRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273 (473)
Q Consensus 207 ----------~~~~~-~~~~~~~-~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 273 (473)
...++ ....+.. .+..... ......+.+...+...+|+|+|++|+.+. ++.|++||+... .+..+
T Consensus 203 ~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l 280 (1045)
T 1k32_A 203 STHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKI 280 (1045)
T ss_dssp SSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEEC
T ss_pred CCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEe-CCEEEEecCCce-Eeeee
Confidence 00000 0011111 1111111 11111122223467789999999888885 899999999444 34455
Q ss_pred ec-----------CCCceeEEEEc-CCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc-cEEEEEEccCCCEE
Q 012007 274 NA-----------HDDAINSVVAG-FDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN-AVTALAVNQESAVV 339 (473)
Q Consensus 274 ~~-----------~~~~v~~l~~~-~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l 339 (473)
.. |...+.++.|+ |++ .+++++ ++.|.+|++..+. ...+..|.. .+..++|+ +++.|
T Consensus 281 ~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 281 EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-------VLKVPEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-------EEECSCCSCEEEEEECSS-SEEEE
T ss_pred ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-------eEEccCCCcceEEeeeEc-CCCeE
Confidence 44 33468999999 998 566665 8899999986321 123455666 89999999 99999
Q ss_pred EEeCCCCcEE-EEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEE
Q 012007 340 YCGSSDGLVN-FWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCL 416 (473)
Q Consensus 340 ~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l 416 (473)
+.++.++.+. +||+...... .+.+|...+ .+++++|++|++++.++.|++||+.++ +....+.+|.+.|.++
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~--~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg---~~~~~~~~~~~~v~~~ 426 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAE--KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG---KPTVIERSREAMITDF 426 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEE--ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCCCCE
T ss_pred EEEECCCceEEEEECCCCCce--EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC---ceEEeccCCCCCccce
Confidence 9888888888 8998764332 222555544 556678999999999999999999883 4555556889999999
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCCC----------cEEEEEcCCCC
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDK----------SVKVWRVSEHA 456 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg----------~v~iW~i~~~~ 456 (473)
+|+||++ +|++++.++ .|++||+..++
T Consensus 427 ~~SpDG~-------------~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 427 TISDNSR-------------FIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EECTTSC-------------EEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EECCCCC-------------eEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 9999998 777776654 89999998764
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=4e-20 Score=173.33 Aligned_cols=270 Identities=10% Similarity=0.187 Sum_probs=175.9
Q ss_pred ecccEE--EEEecCCEEEEeeCC-CcEEEeeCC--c-c---ccccccCcccEEEEEEeCCCCEEEEEeC-CCeEEEEeCC
Q 012007 122 KEGHIY--SLAASGDLLYTGSDS-KNIRVWKNL--K-E---FSGFKSNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVS 191 (473)
Q Consensus 122 h~~~V~--~~~~~g~~l~tg~~d-g~i~vwd~~--~-~---~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~ 191 (473)
|.+.+. +++++|++|++++.+ +.|++|++. . . +..+..+ +.+..++|+|++++|++++. ++.|.+||+.
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 444444 455679988888886 999999864 1 1 2233333 37899999999998877765 8899999985
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCC-Cee
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISD-CKC 269 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~-~~~ 269 (473)
.+....... .+.....+.+++|+|++++|++++ .++.|.+||+.+ ++.
T Consensus 115 ~~~~~~~~~------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 115 DGLPVGVVD------------------------------VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp TTEEEEEEE------------------------------EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCccccccc------------------------------cccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 322111110 111344688999999999888887 899999999987 644
Q ss_pred eE----Eeec-CCCceeEEEEcCCC-EEE-EEeCCCcEEEEeCcccCCCcc-eeeeeeec---cCCccEEEEEEccCCCE
Q 012007 270 LE----SINA-HDDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTK-HCLAQVLL---KHENAVTALAVNQESAV 338 (473)
Q Consensus 270 ~~----~~~~-~~~~v~~l~~~~~~-~l~-s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~---~~~~~v~~l~~~~~~~~ 338 (473)
.. .+.. ....+..++|+|++ +++ ++..++.|.+|++........ ........ .....+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 2232 34578889999998 454 455889999999963211011 11111111 11346778999999987
Q ss_pred EE-EeCCCCcEEEEecCC--c-ccccceeecC-cceEEEEEecCCEEEEEe-CCCcEEEEecCCC-CceeEEEEecCCCC
Q 012007 339 VY-CGSSDGLVNFWECEK--H-LSHGGVLRGH-KMAVLCLAAAGNLVFSGS-ADRNICLWRREES-GAHSCLAVLTGHTG 411 (473)
Q Consensus 339 l~-~~~~dg~i~iwd~~~--~-~~~~~~~~~~-~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~~-~~~~~~~~~~~h~~ 411 (473)
|+ ++..++.|.+||+.. + ......+..+ .....++++++++|++++ .++.|.+|+++.. +..+.+..+.. ..
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~ 323 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQ 323 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SS
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CC
Confidence 77 555799999999972 1 1222222222 233456777899888887 6899999966531 22344555544 24
Q ss_pred ceeEEEEecCCC
Q 012007 412 PVKCLAVEEDRD 423 (473)
Q Consensus 412 ~V~~l~~~~~~~ 423 (473)
...+++|.++.+
T Consensus 324 ~p~~i~~~~~~~ 335 (343)
T 1ri6_A 324 GPMWVVVNAHEG 335 (343)
T ss_dssp SCCEEEEEEEC-
T ss_pred CCeeEEEEcccC
Confidence 567888888764
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=8e-21 Score=196.33 Aligned_cols=290 Identities=9% Similarity=0.080 Sum_probs=190.9
Q ss_pred ccEEEEEecC-CEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC-----CCee
Q 012007 124 GHIYSLAASG-DLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR-----KNAS 196 (473)
Q Consensus 124 ~~V~~~~~~g-~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~-----~~~~ 196 (473)
..|.+++++. +.++.+. |+.|++||... ....+..+...+.+++|+|||++|+.+ .|+.|++||+.+ ++..
T Consensus 82 ~~v~~~~~spd~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~ 159 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI 159 (706)
T ss_dssp CCCEEEEETTTTEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE
T ss_pred cCceeEEECCCCeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE
Confidence 3466665542 5555554 59999999763 344455677789999999999999985 689999999987 5432
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe----------------------
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS---------------------- 254 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s---------------------- 254 (473)
........ ..... . . ....+...+.++.|+|||++|++++
T Consensus 160 ~~~~~~~~----~~~~g-~------------~-~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~ 221 (706)
T 2z3z_A 160 AVTIDGTE----TLVYG-Q------------A-VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESK 221 (706)
T ss_dssp ESCSCCBT----TEEES-S------------C-CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred EeccCCCC----CeEcc-c------------c-hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence 21111000 00000 0 0 0001223468899999999999987
Q ss_pred -----------CCCCEEEEEcCCCeeeEEee--cCCCceeEEEEcCCC-EEEEEeCCC-----cEEEEeCcccCCCccee
Q 012007 255 -----------WDKTLKVWRISDCKCLESIN--AHDDAINSVVAGFDS-LVFTGSADG-----TVKVWRRELQGKGTKHC 315 (473)
Q Consensus 255 -----------~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~~~~~-~l~s~~~dg-----~i~vwd~~~~~~~~~~~ 315 (473)
.+..|++||+.+++...... .|...+..+.|+|++ .|++++.++ .|.+||+..+..
T Consensus 222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~----- 296 (706)
T 2z3z_A 222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF----- 296 (706)
T ss_dssp EECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-----
T ss_pred EeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-----
Confidence 44679999999988655442 466789999999998 677777665 899999874311
Q ss_pred eeeee-ccCC---ccEEEEEEcc--CCCEEEEeCCCCcEEEEecCCcccccceeecCcceE---EEEEecCCEEEEEeC-
Q 012007 316 LAQVL-LKHE---NAVTALAVNQ--ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV---LCLAAAGNLVFSGSA- 385 (473)
Q Consensus 316 ~~~~~-~~~~---~~v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~s~~~- 385 (473)
..... ..+. ..+..++|+| +|++++++..|+.++||++.........+..+...+ ..++++++.|+.++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 297 VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred eeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 11111 1122 2246789999 999999999999999998762222223444555444 456778887766554
Q ss_pred CC----cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe-eCC---CcEEEEEcCCCC
Q 012007 386 DR----NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG-SLD---KSVKVWRVSEHA 456 (473)
Q Consensus 386 dg----~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~-s~D---g~v~iW~i~~~~ 456 (473)
++ .|..||+.++. ...+. |...+.+++|+|+++ +|+.. +.+ +.|++||+..++
T Consensus 377 ~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~spdg~-------------~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 377 ASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQLSPDGS-------------AIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEECTTSS-------------EEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCceEEEEEEEcCCCC----ceecc-CCCceEEEEECCCCC-------------EEEEEecCCCCCcEEEEEECCCCe
Confidence 44 56666666532 23333 667799999999998 55544 333 569999998764
No 144
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=1e-20 Score=183.05 Aligned_cols=224 Identities=15% Similarity=0.187 Sum_probs=156.5
Q ss_pred CcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEE
Q 012007 143 KNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVE 222 (473)
Q Consensus 143 g~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (473)
+.|++|+.... .+...++.+++++++.+|++++.|+ |++|+....... .... . ....
T Consensus 23 ~~vri~~~~~~-----~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~--~~~~--~----------~~~~--- 79 (434)
T 2oit_A 23 KKVRIFDSPEE-----LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ--NKPG--D----------DPNK--- 79 (434)
T ss_dssp CEEECSCCCSS-----CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC--CCTT--C----------CTTC---
T ss_pred eeEEecCCccc-----cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh--cccc--c----------Cccc---
Confidence 57899875422 2345689999999999999999988 889876421100 0000 0 0000
Q ss_pred EeecceeeEeeccCCeeEEEEcCCCCEEE----EEeCCCCEEEEEcCCC--------ee---eEEeecCCCceeEEEEcC
Q 012007 223 VRRNRSVLKIRHYDAVSCLSLNAEQGLLY----SGSWDKTLKVWRISDC--------KC---LESINAHDDAINSVVAGF 287 (473)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~----s~s~dg~v~vwd~~~~--------~~---~~~~~~~~~~v~~l~~~~ 287 (473)
.........+.+...|.+++|+|++++|+ +|+.|+.|++||+.++ +. +..+.+|...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 159 (434)
T 2oit_A 80 IVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNP 159 (434)
T ss_dssp EEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECS
T ss_pred ccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECC
Confidence 00011112234677899999999999999 7889999999998754 22 455667999999999999
Q ss_pred C-C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee-
Q 012007 288 D-S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR- 364 (473)
Q Consensus 288 ~-~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 364 (473)
+ + +|++++.||.|++||++.. ........|...|.+++|+|+|++|++|+.||.|++||.+. ... ..+.
T Consensus 160 ~~~~~las~s~Dg~v~iwD~~~~------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~-~~~~~ 231 (434)
T 2oit_A 160 TVPSMVAVCLADGSIAVLQVTET------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEK-KVIPC 231 (434)
T ss_dssp SCTTEEEEEETTSCEEEEEESSS------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEE-EEECC
T ss_pred CCCCEEEEEECCCeEEEEEcCCC------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-ccc-ccccC
Confidence 7 4 8999999999999999742 12334456888999999999999999999999999999982 211 1111
Q ss_pred ------cCcceEEEEEec--CCEEEE-EeCCC------cEEEEecCCC
Q 012007 365 ------GHKMAVLCLAAA--GNLVFS-GSADR------NICLWRREES 397 (473)
Q Consensus 365 ------~~~~~v~~~~~~--~~~l~s-~~~dg------~i~iwd~~~~ 397 (473)
.|...+.++.++ +.++++ +..|| .+++|++...
T Consensus 232 ~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 232 PPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 234477777765 444433 33443 3899999864
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=1.2e-20 Score=196.10 Aligned_cols=287 Identities=8% Similarity=0.048 Sum_probs=191.7
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCCc----cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~~----~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.++++||++|++++. +.|++||... ....+..|...+.+++|+|||++|+.++ ++.|++||+.+++........
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 356778999999987 8999999763 4667778888999999999999999987 469999999876543221110
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC-------------------------
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK------------------------- 257 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg------------------------- 257 (473)
... ... .............+..++|+|||++|++++.|+
T Consensus 192 ~~~----~~~------------g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 192 STT----IGN------------GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp CSS----EEE------------SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred ccc----eec------------cccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 000 000 000000000112357899999999999998765
Q ss_pred --------CEEEEEcCC-CeeeEEee--cCCCceeEEEEcCCC-EEEEEeC-----CCcEEEEeCcccCCCcceeeeeee
Q 012007 258 --------TLKVWRISD-CKCLESIN--AHDDAINSVVAGFDS-LVFTGSA-----DGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 258 --------~v~vwd~~~-~~~~~~~~--~~~~~v~~l~~~~~~-~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
.|.+||+.+ ++...... .|...+..++| |++ .|++++. +..|.+||+..+. .....
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~------~~~~~ 328 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ------QRVLA 328 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC------EEEEE
T ss_pred CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc------eEEEE
Confidence 789999988 77654433 47788999999 998 5655443 5679999987432 11222
Q ss_pred ccCCc----cEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE---EEEecCCEEE-EEeCCC--cEE
Q 012007 321 LKHEN----AVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL---CLAAAGNLVF-SGSADR--NIC 390 (473)
Q Consensus 321 ~~~~~----~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~---~~~~~~~~l~-s~~~dg--~i~ 390 (473)
..+.. .+..++|+|+|+++++++.||.++||.+..... ...+..|...+. .++++++.|+ +++.++ .++
T Consensus 329 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~ 407 (741)
T 2ecf_A 329 HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQ 407 (741)
T ss_dssp EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBE
T ss_pred EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEE
Confidence 22222 346789999999999999999888887652222 344555555443 4778888765 455555 899
Q ss_pred EEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC---CcEEEEEcCC
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD---KSVKVWRVSE 454 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D---g~v~iW~i~~ 454 (473)
||++...+ .....+.. ...+..++|+|+++. ++++.+.. ..+.+|+...
T Consensus 408 l~~~~~~g--~~~~~l~~-~~~~~~~~~spdg~~------------l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 408 IYAVPLQG--GQPQRLSK-APGMHSASFARNASV------------YVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp EEEEETTC--CCCEECCC-SCSEEEEEECTTSSE------------EEEEEEETTEEEEEEEEETTS
T ss_pred EEEEEcCC--CCeeeccc-CCCceEEEECCCCCE------------EEEEecCCCCCCeEEEEEcCC
Confidence 99986422 23444544 567889999999982 33333333 4688888754
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=5e-20 Score=190.89 Aligned_cols=267 Identities=10% Similarity=0.020 Sum_probs=175.1
Q ss_pred EEEEecCCEEEEeeCC---------CcEEEeeCCcc----ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 127 YSLAASGDLLYTGSDS---------KNIRVWKNLKE----FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~d---------g~i~vwd~~~~----~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
.++++||++|++++.+ +.|++||.... +.....|...+..++|+|||++|+.++. +.|++||+.++
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g 144 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK 144 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC
Confidence 4566789999999875 77889997632 2233445566999999999999999886 79999999887
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc---------CCeeEEEEcCCCCEEEEEeCCC-------
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY---------DAVSCLSLNAEQGLLYSGSWDK------- 257 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~l~s~s~dg------- 257 (473)
+........... ....++. ..+.+++|+|||++|++++.|+
T Consensus 145 ~~~~~~~~~~~~-----------------------~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~ 201 (723)
T 1xfd_A 145 QAIRVVSTGKEG-----------------------VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME 201 (723)
T ss_dssp CCEEEECCCBTT-----------------------TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred ceEEEecCCCCC-----------------------ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEE
Confidence 654322211000 0001111 2347899999999999987553
Q ss_pred ---------------------------CEEEEEcCCCeeeEEeecC------CCceeEEEEcCCC-EEEEEeC----CCc
Q 012007 258 ---------------------------TLKVWRISDCKCLESINAH------DDAINSVVAGFDS-LVFTGSA----DGT 299 (473)
Q Consensus 258 ---------------------------~v~vwd~~~~~~~~~~~~~------~~~v~~l~~~~~~-~l~s~~~----dg~ 299 (473)
.|++||+.+++....+..+ ...+..+.|+|++ ++++... +..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 281 (723)
T 1xfd_A 202 LPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSI 281 (723)
T ss_dssp ECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEE
T ss_pred eeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEE
Confidence 7999999988865666544 5678999999999 4444433 357
Q ss_pred EEEEeCcccCCCcceeeeeeeccCCccE----EEEEEccCCCEEEE--eCCCC------cEEEEe-cCCccc--ccceee
Q 012007 300 VKVWRRELQGKGTKHCLAQVLLKHENAV----TALAVNQESAVVYC--GSSDG------LVNFWE-CEKHLS--HGGVLR 364 (473)
Q Consensus 300 i~vwd~~~~~~~~~~~~~~~~~~~~~~v----~~l~~~~~~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~~ 364 (473)
|.+||+..+. ........+...+ ..++|+|+|+.|+. +..++ .|.+|| ...+.. ......
T Consensus 282 i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 356 (723)
T 1xfd_A 282 LTLCDATTGV-----CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS 356 (723)
T ss_dssp EEEEETTTCC-----EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred EEEEeCCCCc-----ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence 9999986432 1111112233333 37899999987664 45666 567777 333320 222222
Q ss_pred cCcce--EEEEEecCCEEEEEeCC---CcEEEEecCCCCceeEEEEecC---CCCceeEEEEecCCC
Q 012007 365 GHKMA--VLCLAAAGNLVFSGSAD---RNICLWRREESGAHSCLAVLTG---HTGPVKCLAVEEDRD 423 (473)
Q Consensus 365 ~~~~~--v~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~---h~~~V~~l~~~~~~~ 423 (473)
++... +.+++++|+.|+..+.+ +.++||++...+. .....+.. |...+..++|+|+++
T Consensus 357 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~spdg~ 422 (723)
T 1xfd_A 357 GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN-FNRQCLSCDLVENCTYFSASFSHSMD 422 (723)
T ss_dssp SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT-CCCBCSSTTSSSSCCCCEEEECTTSS
T ss_pred CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC-CCcceecccccCCCCeEEEEECCCCC
Confidence 23222 35788999998766555 7899999875321 12223333 677799999999988
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=2.1e-19 Score=169.34 Aligned_cols=240 Identities=12% Similarity=0.092 Sum_probs=176.2
Q ss_pred cccEEEEEEeCCCCEEEEEeC-------CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 161 SGLVKAIIISGDSNKIFTGHQ-------DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
...+..++|+|++++|++++. ++.|.+||..+++......
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------------------- 86 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------------------- 86 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE---------------------------------
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe---------------------------------
Confidence 456789999999999988874 5689999999887554433
Q ss_pred ccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCc---------eeEEEEcCCC-EEEEEe--CCCcE
Q 012007 234 HYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDA---------INSVVAGFDS-LVFTGS--ADGTV 300 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~---------v~~l~~~~~~-~l~s~~--~dg~i 300 (473)
....+..++|++++++++++ ..++.|.+||+.+++.+..+..+... +.++.+++++ .+++++ .++.|
T Consensus 87 ~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i 166 (353)
T 3vgz_A 87 NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVI 166 (353)
T ss_dssp ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEE
T ss_pred cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceE
Confidence 33446789999999966655 45789999999999998888765432 6889999987 555554 58899
Q ss_pred EEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee---cCcceE--EEEEe
Q 012007 301 KVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR---GHKMAV--LCLAA 375 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v--~~~~~ 375 (473)
.+||..... ....+..+...+..++|+|++++|++++.++.|.+||+.+......... ++...+ .++++
T Consensus 167 ~~~d~~~~~------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 167 WVVDGGNIK------LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp EEEETTTTE------EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred EEEcCCCCc------eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 999986322 2333333455678899999999999999999999999987654433222 122233 56778
Q ss_pred cCCEEEEEeC-CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 376 AGNLVFSGSA-DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 376 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
++++|++++. ++.|.+||..++ +.+..+.... ..+++|+|+++. ++++...++.|.+||+.+
T Consensus 241 dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~--~~~~~~s~dg~~------------l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 241 ARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE--SLAVLFNPARNE------------AYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp TTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS--CCCEEEETTTTE------------EEEEETTTTEEEEEETTT
T ss_pred CCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC--CceEEECCCCCE------------EEEEECCCCeEEEEECCC
Confidence 8987777665 489999999884 4444444332 267999999873 455555799999999987
Q ss_pred CC
Q 012007 455 HA 456 (473)
Q Consensus 455 ~~ 456 (473)
++
T Consensus 304 ~~ 305 (353)
T 3vgz_A 304 YK 305 (353)
T ss_dssp TE
T ss_pred Ce
Confidence 64
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=4.1e-19 Score=168.06 Aligned_cols=272 Identities=9% Similarity=0.113 Sum_probs=177.0
Q ss_pred EEEEee----CCCcEEEeeCC---cc---ccccccCcccEEEEEEeCCCCEEEEEeCC----CeEEEEeCCCC--CeeeE
Q 012007 135 LLYTGS----DSKNIRVWKNL---KE---FSGFKSNSGLVKAIIISGDSNKIFTGHQD----GKIRIWKVSRK--NASVH 198 (473)
Q Consensus 135 ~l~tg~----~dg~i~vwd~~---~~---~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~i~vwd~~~~--~~~~~ 198 (473)
+++.|+ .++.|.+|+.. .. +..+ +...+..++|+|||++|++++.+ +.|.+|++... .....
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 455553 35689998642 11 1222 66778889999999999999886 79999998763 22111
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEe----
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESI---- 273 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~---- 273 (473)
.... .+......+++ ++++|++++ .++.|.+|++.....+..+
T Consensus 93 ~~~~------------------------------~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 140 (361)
T 3scy_A 93 NTQK------------------------------TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVI 140 (361)
T ss_dssp EEEE------------------------------CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEE
T ss_pred eEec------------------------------cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeE
Confidence 1110 13445667777 788787776 5789999999754332211
Q ss_pred e--c--------CCCceeEEEEcCCC-EEEE-EeCCCcEEEEeCcccCC------Ccce-eeeeeeccCCccEEEEEEcc
Q 012007 274 N--A--------HDDAINSVVAGFDS-LVFT-GSADGTVKVWRRELQGK------GTKH-CLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 274 ~--~--------~~~~v~~l~~~~~~-~l~s-~~~dg~i~vwd~~~~~~------~~~~-~~~~~~~~~~~~v~~l~~~~ 334 (473)
. + +...+.+++|+|++ ++++ ...++.|.+|++..... .... ............+..++|+|
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp 220 (361)
T 3scy_A 141 EFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS 220 (361)
T ss_dssp ECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT
T ss_pred EccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC
Confidence 1 1 12235789999998 4544 44589999999874321 0000 00122334456678999999
Q ss_pred CCCEEEEeC-CCCcEEEEecCCcccc-cceee---cCc--ceEEEEEecCCEEEEEeCC--CcEEEEecCC-CCceeEEE
Q 012007 335 ESAVVYCGS-SDGLVNFWECEKHLSH-GGVLR---GHK--MAVLCLAAAGNLVFSGSAD--RNICLWRREE-SGAHSCLA 404 (473)
Q Consensus 335 ~~~~l~~~~-~dg~i~iwd~~~~~~~-~~~~~---~~~--~~v~~~~~~~~~l~s~~~d--g~i~iwd~~~-~~~~~~~~ 404 (473)
+++++++++ .++.|.+||+.++... ..... .+. ..-.+++++|++|+++..+ +.|.+|++.. .+....+.
T Consensus 221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~ 300 (361)
T 3scy_A 221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG 300 (361)
T ss_dssp TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE
T ss_pred CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee
Confidence 999877766 6899999998754221 11111 111 1246677899988776654 8999999962 22344555
Q ss_pred EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee-CCCcEEEEEcCC
Q 012007 405 VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVSE 454 (473)
Q Consensus 405 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~ 454 (473)
.+.. ...+.+++|+|+++ +|++++ .++.|.+|++..
T Consensus 301 ~~~~-g~~~~~~~~spdg~-------------~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 301 YQLT-GIHPRNFIITPNGK-------------YLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEEC-SSCCCEEEECTTSC-------------EEEEEETTTTEEEEEEECT
T ss_pred EecC-CCCCceEEECCCCC-------------EEEEEECCCCCEEEEEEEC
Confidence 5554 56789999999998 666666 679999987764
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=3.7e-20 Score=199.28 Aligned_cols=288 Identities=11% Similarity=0.078 Sum_probs=215.3
Q ss_pred ceeeeeeecccEEEEEecCC-EEEEeeCCCcEEEeeCC---ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAASGD-LLYTGSDSKNIRVWKNL---KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~g~-~l~tg~~dg~i~vwd~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
....+.+|.+.+.++.++++ ++++++.|+.++||... .....+..|. .+..++|+|||++|+.+ .++.|++|++
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~ 272 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP 272 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred CeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence 34556889999999999866 45677778999999632 3344455554 46778999999999887 5899999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEc-CCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN-AEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
...... .+.... .........|...+.+++|+ |+|++|++++ ++.|.+|++..++.
T Consensus 273 ~~~~l~---~l~~~~-------------------~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~ 329 (1045)
T 1k32_A 273 DTEKIE---KIEIGD-------------------LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV 329 (1045)
T ss_dssp TTCCEE---ECCCCC-------------------CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE
T ss_pred CceEee---eeccCc-------------------ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce
Confidence 443322 111000 00011122366789999999 9999999888 78999999988765
Q ss_pred eEEeecCCC-ceeEEEEcCCC-EEEEEeCCCcEE-EEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 270 LESINAHDD-AINSVVAGFDS-LVFTGSADGTVK-VWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 270 ~~~~~~~~~-~v~~l~~~~~~-~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
.. +..|.. .+..+.|+ ++ .++.++.++.+. +||+.... . ..+..|...+..++|+|+|++|++++.++
T Consensus 330 ~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~------~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~ 400 (1045)
T 1k32_A 330 LK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK------A-EKFEENLGNVFAMGVDRNGKFAVVANDRF 400 (1045)
T ss_dssp EE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC------E-EECCCCCCSEEEEEECTTSSEEEEEETTS
T ss_pred EE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC------c-eEecCCccceeeeEECCCCCEEEEECCCC
Confidence 44 556666 89999999 87 777777788888 88876321 1 22336778899999999999999999999
Q ss_pred cEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCC----------cEEEEecCCCCceeEEEEecCCCCcee
Q 012007 347 LVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADR----------NICLWRREESGAHSCLAVLTGHTGPVK 414 (473)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~~~~h~~~V~ 414 (473)
.|++||+.++... ....+|...+ .+++++|++|++++.++ .|++||+.++ . +..+..|...+.
T Consensus 401 ~v~~~d~~tg~~~-~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---~-~~~l~~~~~~~~ 475 (1045)
T 1k32_A 401 EIMTVDLETGKPT-VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---K-IFAATTENSHDY 475 (1045)
T ss_dssp EEEEEETTTCCEE-EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---E-EEECSCSSSBEE
T ss_pred eEEEEECCCCceE-EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC---c-EEEeeCCCcccC
Confidence 9999999876433 3444666554 56778899998887654 8999999873 3 667778888899
Q ss_pred EEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.++|+|+++ .|++++.++...+|+...
T Consensus 476 ~~~~spdG~-------------~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 476 APAFDADSK-------------NLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp EEEECTTSC-------------EEEEEESCCCCCEECSSS
T ss_pred CceEcCCCC-------------EEEEEecccCCcCcchhc
Confidence 999999998 788888888888887653
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=6.1e-20 Score=168.01 Aligned_cols=225 Identities=12% Similarity=0.084 Sum_probs=163.6
Q ss_pred EEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC
Q 012007 178 TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK 257 (473)
Q Consensus 178 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg 257 (473)
.++.|+.|++||+.+++..... .|...|.+++|+|++++|++++ ++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~---------------------------------~~~~~v~~~~~spdg~~l~~~~-~~ 62 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW---------------------------------QTPELFEAPNWSPDGKYLLLNS-EG 62 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE---------------------------------EESSCCEEEEECTTSSEEEEEE-TT
T ss_pred CCCcceeEEEEeCCCCceeeec---------------------------------cCCcceEeeEECCCCCEEEEEc-CC
Confidence 3467899999999887643222 3788999999999999999987 78
Q ss_pred CEEEEEcCC-CeeeEEeecC-CCceeEEEEcCCC-EEEEEe--CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEE
Q 012007 258 TLKVWRISD-CKCLESINAH-DDAINSVVAGFDS-LVFTGS--ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV 332 (473)
Q Consensus 258 ~v~vwd~~~-~~~~~~~~~~-~~~v~~l~~~~~~-~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 332 (473)
.|++||+.+ ++.......+ ...+.++.|+|++ .|++++ .++.+.||.++.... ....+.. ...+..++|
T Consensus 63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~-~~~~~~~~~ 136 (297)
T 2ojh_A 63 LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG-----TPRLMTK-NLPSYWHGW 136 (297)
T ss_dssp EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC-----CCEECCS-SSSEEEEEE
T ss_pred eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC-----ceEEeec-CCCccceEE
Confidence 999999998 8777666655 3678999999998 777777 445666766543221 1122222 334889999
Q ss_pred ccCCCEEE-EeCCCCcEEEEecCCcccccceeecCcceEEE--EEecCCEEEEEe-CCCcEEEEecCCCCceeEEEEecC
Q 012007 333 NQESAVVY-CGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC--LAAAGNLVFSGS-ADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 333 ~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
+|++++|+ ++..++.+++|+++........+..+...+.+ +++++++|+.++ .++.+++|++... ...+..+..
T Consensus 137 spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~--~~~~~~~~~ 214 (297)
T 2ojh_A 137 SPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD--GSSVERITD 214 (297)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--SSCEEECCC
T ss_pred CCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC--CCCcEEEec
Confidence 99999877 77789999999864322222344455555544 456788877666 5899999998732 234566777
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC-----------CcEEEEEcCCCCC
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD-----------KSVKVWRVSEHAP 457 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D-----------g~v~iW~i~~~~~ 457 (473)
|...+.+++|+|+++ +|++++.| +.|++|++..++.
T Consensus 215 ~~~~~~~~~~s~dg~-------------~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGD-------------KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CSEEEEEEEECTTSS-------------EEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CCcccCCeEECCCCC-------------EEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 888999999999998 67777765 5699999987653
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=4.9e-20 Score=186.00 Aligned_cols=262 Identities=11% Similarity=0.035 Sum_probs=183.4
Q ss_pred ccEEEE--EecCCEEEEeeC-CCcEEEeeCC-ccccccccCc-ccEEEEEEeCCCCEEEEEeC---CCeEEEEeCCC--C
Q 012007 124 GHIYSL--AASGDLLYTGSD-SKNIRVWKNL-KEFSGFKSNS-GLVKAIIISGDSNKIFTGHQ---DGKIRIWKVSR--K 193 (473)
Q Consensus 124 ~~V~~~--~~~g~~l~tg~~-dg~i~vwd~~-~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~---dg~i~vwd~~~--~ 193 (473)
..|+++ ++||++||+++. ||+++||++. .....+..|. ..|..++|+|| +.+++++. +...++|.+.. .
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence 345554 578999999887 9999999854 2233444555 68999999999 77887775 45566665543 2
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC-EEEEEeCCCCEEEEEcCCCeeeEE
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKCLES 272 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~ 272 (473)
.... .+. ....+...+|+|+++ .+++.+.++.+.+||+.+++....
T Consensus 101 g~~~--~l~-------------------------------~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l 147 (582)
T 3o4h_A 101 GEEQ--RLE-------------------------------AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL 147 (582)
T ss_dssp TCCE--ECT-------------------------------TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE
T ss_pred Cccc--ccc-------------------------------CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe
Confidence 2111 111 222344567888775 334444455666999999887665
Q ss_pred eecCCCceeEEEEcCCC-EEEEEeCC----CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-
Q 012007 273 INAHDDAINSVVAGFDS-LVFTGSAD----GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG- 346 (473)
Q Consensus 273 ~~~~~~~v~~l~~~~~~-~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg- 346 (473)
...+. .++.|+|+| .|++++.+ +.|++||+..+. ...+..|...+..++|+|||++|+++..++
T Consensus 148 ~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 217 (582)
T 3o4h_A 148 ARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-------LRVFDSGEGSFSSASISPGMKVTAGLETARE 217 (582)
T ss_dssp EEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-------CEEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred ecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-------ceEeecCCCccccceECCCCCEEEEccCCCe
Confidence 54333 788999998 77767766 779999986432 234567888899999999999999888888
Q ss_pred -cEEEEecCCcccccceeecCcceE--EE--------EEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeE
Q 012007 347 -LVNFWECEKHLSHGGVLRGHKMAV--LC--------LAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKC 415 (473)
Q Consensus 347 -~i~iwd~~~~~~~~~~~~~~~~~v--~~--------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~ 415 (473)
.|++||+.++... .+.+|...+ .. ++++|.++++++.|+.+++|++ . +.+. .+.+.|.+
T Consensus 218 ~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g----~~~~---~~~~~v~~ 287 (582)
T 3o4h_A 218 ARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-G----ERVE---APQGNHGR 287 (582)
T ss_dssp EEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-T----EEEC---CCSSEEEE
T ss_pred eEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-C----Ceec---cCCCceEE
Confidence 8999999876544 444554332 23 8889999999999999999999 2 2222 34467899
Q ss_pred EEEecCCCCCcccccCCCccEEEEEeeCCCc---EEEEEcC
Q 012007 416 LAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS---VKVWRVS 453 (473)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~---v~iW~i~ 453 (473)
++|+ ++. ++++++.+.. |.+|+..
T Consensus 288 ~~~s-dg~-------------~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 288 VVLW-RGK-------------LVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEE-TTE-------------EEEEEEETTEEEEEEEETTC
T ss_pred EEec-CCE-------------EEEEEcCCCCCCeEEEEcCC
Confidence 9999 776 7788777754 5566554
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=2.9e-19 Score=167.95 Aligned_cols=234 Identities=8% Similarity=0.064 Sum_probs=165.0
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC
Q 012007 166 AIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA 245 (473)
Q Consensus 166 ~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 245 (473)
.+++++++.++++++.++.|++||+.+++........ ....+..++|+|
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-------------------------------~~~~~~~~~~s~ 52 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP-------------------------------DKFGPGTAMMAP 52 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS-------------------------------SCCSSCEEEECT
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC-------------------------------CCCCCceeEECC
Confidence 3567788889999999999999999887654433211 112567899999
Q ss_pred CCCEEEE-EeCCCCEEEEEcCCCeeeEEeecCC------CceeEEEEcCCC-EEEEEeCC------------CcEEEEeC
Q 012007 246 EQGLLYS-GSWDKTLKVWRISDCKCLESINAHD------DAINSVVAGFDS-LVFTGSAD------------GTVKVWRR 305 (473)
Q Consensus 246 ~~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~------~~v~~l~~~~~~-~l~s~~~d------------g~i~vwd~ 305 (473)
+++++++ +..++.|.+||+.+++.+..+..+. ..+..++++|++ ++++++.+ +.|.+||+
T Consensus 53 dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~ 132 (349)
T 1jmx_B 53 DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 132 (349)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence 9986654 4568899999999999887776432 237889999998 77777755 89999998
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecC-------------------
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGH------------------- 366 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------- 366 (473)
..+.. ...... ..+...+.+++|+|+++ +++++. .|.+||+.++........+.
T Consensus 133 ~~~~~---~~~~~~-~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (349)
T 1jmx_B 133 ADGLE---AKPVRT-FPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS 205 (349)
T ss_dssp GGGGG---BCCSEE-EECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCC
T ss_pred CCccc---cceeee-ccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCC
Confidence 74321 111112 22334688999999999 555544 49999987654322111110
Q ss_pred --------------------------------------------------cceEEEEEe-cCCEEEEEeCCCcEEEEecC
Q 012007 367 --------------------------------------------------KMAVLCLAA-AGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 367 --------------------------------------------------~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~ 395 (473)
.....++++ ++++++++ ++.|.+||+.
T Consensus 206 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~ 283 (349)
T 1jmx_B 206 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLK 283 (349)
T ss_dssp TTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETT
T ss_pred cceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECc
Confidence 001123457 88898888 8899999998
Q ss_pred CCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 396 ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 396 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+ .+.+..+.. ...+.+++|+|+++ .|++++.++.|++||+.+++
T Consensus 284 ~---~~~~~~~~~-~~~~~~~~~s~dg~-------------~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 284 Q---RKLIKAANL-DHTYYCVAFDKKGD-------------KLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp T---TEEEEEEEC-SSCCCEEEECSSSS-------------CEEEESBSSEEEEEETTTTE
T ss_pred c---CeEEEEEcC-CCCccceEECCCCC-------------EEEEecCCCeEEEEeccccc
Confidence 8 344555443 34578999999987 56667889999999998765
No 153
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.83 E-value=1.3e-18 Score=162.37 Aligned_cols=237 Identities=11% Similarity=0.047 Sum_probs=163.3
Q ss_pred EEeCCCCE-EEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC
Q 012007 168 IISGDSNK-IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE 246 (473)
Q Consensus 168 ~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 246 (473)
.|.+++++ +++++.++.|++||+.+++....... +...+ +++|+|+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--------------------------------~~~~~-~~~~s~d 50 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL--------------------------------GYDFV-DTAITSD 50 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC--------------------------------CCCEE-EEEECSS
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc--------------------------------cCCcc-eEEEcCC
Confidence 45555555 66777899999999998876444331 34455 8999999
Q ss_pred CCEEEEEeC-CCCEEEEEcCCCee-eEEeecCCCceeEEEEcCCC-EEEEEeCCC---cEEEEeCcccCCCcceeeeeee
Q 012007 247 QGLLYSGSW-DKTLKVWRISDCKC-LESINAHDDAINSVVAGFDS-LVFTGSADG---TVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 247 ~~~l~s~s~-dg~v~vwd~~~~~~-~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
++++++++. ++.|.+||+.+++. ...+..+..+..+++++|++ +++++..++ .|.+||+.... ....+
T Consensus 51 g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~------~~~~~ 124 (331)
T 3u4y_A 51 CSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK------FISTI 124 (331)
T ss_dssp SCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE------EEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC------eEEEE
Confidence 997777765 88999999999987 77777777766669999998 566544443 89999986432 12222
Q ss_pred ccCCccEEEEEEccCCCEEEEe-CCCCc-EEEEecCCccccc----ce-eecCcceEEEEEecCCEEEEE-eCCCcEEEE
Q 012007 321 LKHENAVTALAVNQESAVVYCG-SSDGL-VNFWECEKHLSHG----GV-LRGHKMAVLCLAAAGNLVFSG-SADRNICLW 392 (473)
Q Consensus 321 ~~~~~~v~~l~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~~~----~~-~~~~~~~v~~~~~~~~~l~s~-~~dg~i~iw 392 (473)
.......+++|+|++++|+++ ..++. |.+|++....... .. ..+......+++++|++++++ ..++.|.+|
T Consensus 125 -~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 203 (331)
T 3u4y_A 125 -PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGIL 203 (331)
T ss_dssp -ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred -ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEE
Confidence 234456899999999855544 55578 9999987432211 11 112233446677789865554 568999999
Q ss_pred ecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 393 RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
|+.++.....+..+.. ...+.+++|+|+++. ++++...++.|.+||+.+++.
T Consensus 204 d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~------------l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 204 ETQNPENITLLNAVGT-NNLPGTIVVSRDGST------------VYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp ECSSTTSCEEEEEEEC-SSCCCCEEECTTSSE------------EEEECSSEEEEEEEETTTTEE
T ss_pred ECCCCcccceeeeccC-CCCCceEEECCCCCE------------EEEEEcCCCEEEEEECCCCce
Confidence 9987543222555554 366789999999982 445555688999999987654
No 154
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=1.4e-18 Score=164.67 Aligned_cols=246 Identities=11% Similarity=0.112 Sum_probs=163.6
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCC-CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVS-RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
...+..++|+|+|++|++++.+ .|.+|++. +++........ ....+.
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-------------------------------~~g~~~ 86 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-------------------------------IGGHPR 86 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-------------------------------CCSSGG
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-------------------------------cCCCCc
Confidence 3468899999999999999888 99999986 55432211100 012245
Q ss_pred EEEEcCCCCE--EEEEe-------------CCCCEEEEEcC-CCeeeEEee----cCCCceeEEEEcCCC-EEEEEe-CC
Q 012007 240 CLSLNAEQGL--LYSGS-------------WDKTLKVWRIS-DCKCLESIN----AHDDAINSVVAGFDS-LVFTGS-AD 297 (473)
Q Consensus 240 ~l~~~~~~~~--l~s~s-------------~dg~v~vwd~~-~~~~~~~~~----~~~~~v~~l~~~~~~-~l~s~~-~d 297 (473)
+++|+|+|++ ++++. .++.+.+|++. +++....+. .+...+.+++|+|++ +++++. .+
T Consensus 87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~ 166 (365)
T 1jof_A 87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA 166 (365)
T ss_dssp GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC
Confidence 5889999994 55553 68999999997 466544443 245678999999998 566554 46
Q ss_pred CcEEEEeCc-ccCCCcceeeeeeec--cCCccEEEEEEccCCCEEEEeCC-CCcEEEEecC--Ccccc-----ccee---
Q 012007 298 GTVKVWRRE-LQGKGTKHCLAQVLL--KHENAVTALAVNQESAVVYCGSS-DGLVNFWECE--KHLSH-----GGVL--- 363 (473)
Q Consensus 298 g~i~vwd~~-~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~~-----~~~~--- 363 (473)
+.|.+||+. .+. ........ .+...+..++|+|+|++|++++. ++.|.+|++. ++... ...+
T Consensus 167 ~~v~~~~~~~~g~----~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 167 NKLWTHRKLASGE----VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp TEEEEEEECTTSC----EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred CEEEEEEECCCCC----EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 899999986 221 11112222 24567899999999998887664 7899999765 23211 0111
Q ss_pred -ecCc--------ceEEE-EEecCCEEEEEeCCC------cEEEEecCCCCceeEEE-EecCCCCceeEEEEec---CCC
Q 012007 364 -RGHK--------MAVLC-LAAAGNLVFSGSADR------NICLWRREESGAHSCLA-VLTGHTGPVKCLAVEE---DRD 423 (473)
Q Consensus 364 -~~~~--------~~v~~-~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~-~~~~h~~~V~~l~~~~---~~~ 423 (473)
.+|. ..-.+ ++++|++|+++..+. .|.+|++...+....+. ....+...+..++|+| +++
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~ 322 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence 1222 23356 778899888776432 89999996322222211 2334555678899999 787
Q ss_pred CCcccccCCCccEEEEEeeC-CCcEEEEEcCCC
Q 012007 424 HDHEYHQKGDQRWTVYSGSL-DKSVKVWRVSEH 455 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~-Dg~v~iW~i~~~ 455 (473)
+|++++. ++.|.+|++...
T Consensus 323 -------------~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 323 -------------WMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -------------EEEEECSSSCEEEEEEEETT
T ss_pred -------------EEEEEEcCCCeEEEEEEchh
Confidence 6777765 589999999765
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=8.5e-19 Score=163.83 Aligned_cols=236 Identities=13% Similarity=0.091 Sum_probs=165.9
Q ss_pred EEEEecCCEE-EEeeCCCcEEEeeCCc--ccccccc-----CcccEEEEEEeCCCCEEEEEe------------CCCeEE
Q 012007 127 YSLAASGDLL-YTGSDSKNIRVWKNLK--EFSGFKS-----NSGLVKAIIISGDSNKIFTGH------------QDGKIR 186 (473)
Q Consensus 127 ~~~~~~g~~l-~tg~~dg~i~vwd~~~--~~~~~~~-----h~~~V~~l~~s~~~~~l~s~~------------~dg~i~ 186 (473)
.+++++|+++ +++..++.|.+||... .+..+.. |...+.+++|+|+|++|+++. .++.|.
T Consensus 39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~ 118 (337)
T 1pby_B 39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118 (337)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred eEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEE
Confidence 4566778765 5556688999999653 2222321 123678899999999999886 579999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
+||+.+++...... ....+.+++|+|++++|+++ ++.|.+||+.+
T Consensus 119 v~d~~~~~~~~~~~---------------------------------~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 119 LYDAETLSRRKAFE---------------------------------APRQITMLAWARDGSKLYGL--GRDLHVMDPEA 163 (337)
T ss_dssp EEETTTTEEEEEEE---------------------------------CCSSCCCEEECTTSSCEEEE--SSSEEEEETTT
T ss_pred EEECCCCcEEEEEe---------------------------------CCCCcceeEECCCCCEEEEe--CCeEEEEECCC
Confidence 99998765433222 33457789999999988888 68999999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC-EEEEEe-CCC-----------------------cEEEEeCcccCCCcceeeeeeec
Q 012007 267 CKCLESINAHDDAINSVVAGFDS-LVFTGS-ADG-----------------------TVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~-~dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
++.+..+..+... ..+.++|++ .++..+ .++ .|.+||+..... ......
T Consensus 164 ~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-----~~~~~~ 237 (337)
T 1pby_B 164 GTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-----AMREVR 237 (337)
T ss_dssp TEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-----EEEEEE
T ss_pred CcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc-----eEeecC
Confidence 9988777654311 122567776 333322 222 468899874321 123345
Q ss_pred cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCcee
Q 012007 322 KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHS 401 (473)
Q Consensus 322 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 401 (473)
.+...+.+++|+|++++++++ ++.|.+||+.+.........++.....++++++++|++++.++.|.+||+.++ +
T Consensus 238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~---~ 312 (337)
T 1pby_B 238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL---E 312 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC---C
T ss_pred CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC---c
Confidence 566788899999999999988 79999999987654433333444455677888999999999999999999884 4
Q ss_pred EEEEecC
Q 012007 402 CLAVLTG 408 (473)
Q Consensus 402 ~~~~~~~ 408 (473)
.+..+..
T Consensus 313 ~~~~~~~ 319 (337)
T 1pby_B 313 KKGQVDL 319 (337)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 4444443
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=6.6e-18 Score=158.82 Aligned_cols=245 Identities=11% Similarity=0.157 Sum_probs=157.5
Q ss_pred EEEEecCCEEEEeeC---CCcEEEeeCCc----cccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCC-Ceee
Q 012007 127 YSLAASGDLLYTGSD---SKNIRVWKNLK----EFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRK-NASV 197 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~---dg~i~vwd~~~----~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~-~~~~ 197 (473)
.+++++|+ |++++. ++.|++|++.. .+..+..+...+..++|+|+|++|++++ .++.|.+|++... ....
T Consensus 45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL 123 (347)
T ss_dssp EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence 45667788 555543 68999999642 2333445677899999999999999888 6799999999643 2221
Q ss_pred EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC-CCeee--EEee
Q 012007 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS-DCKCL--ESIN 274 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~-~~~~~--~~~~ 274 (473)
......... .+ . ...+...+.+++|+|+++++++...++.|.+|++. +++.. ..+.
T Consensus 124 ~~~~~~~~~---------~p-----------~-~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~ 182 (347)
T 3hfq_A 124 TDTVQHSGH---------GP-----------R-PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT 182 (347)
T ss_dssp EEEEECCCC---------CS-----------S-TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred cceeecCCC---------CC-----------C-ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE
Confidence 111110000 00 0 00133458899999999966666678899999998 55432 2222
Q ss_pred cC-CCceeEEEEcCCC-EEE-EEeCCCcEEEEeCcccCCCcceeeeeeeccCC------ccEEEEEEccCCCEEE-EeCC
Q 012007 275 AH-DDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHE------NAVTALAVNQESAVVY-CGSS 344 (473)
Q Consensus 275 ~~-~~~v~~l~~~~~~-~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------~~v~~l~~~~~~~~l~-~~~~ 344 (473)
.+ ......++|+|++ +++ +...++.|.+|++..... ............ ..+..++|+|+|++|+ +...
T Consensus 183 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 183 MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG--AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET
T ss_pred cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC--ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC
Confidence 22 3367889999998 344 456789999999874211 111112222111 4588999999999875 4556
Q ss_pred CCcEEEEecCCcc--cccceeecCc--ceEEEEEecCCEEEEEeCC-CcEEEEecC
Q 012007 345 DGLVNFWECEKHL--SHGGVLRGHK--MAVLCLAAAGNLVFSGSAD-RNICLWRRE 395 (473)
Q Consensus 345 dg~i~iwd~~~~~--~~~~~~~~~~--~~v~~~~~~~~~l~s~~~d-g~i~iwd~~ 395 (473)
++.|.+|++.... ........+. ..-.+++++|++|++++.+ +.|.+|+++
T Consensus 261 ~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 261 YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 8999999987321 2222233322 3346677889988888765 899999654
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=4e-18 Score=162.86 Aligned_cols=284 Identities=8% Similarity=0.003 Sum_probs=182.3
Q ss_pred eeeeeeecccEE-------EEEecCCEEEEeeC-CCc--EEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCC
Q 012007 116 IGSIVRKEGHIY-------SLAASGDLLYTGSD-SKN--IRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183 (473)
Q Consensus 116 ~~~l~~h~~~V~-------~~~~~g~~l~tg~~-dg~--i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 183 (473)
+..|..|.+.+. ++++||++|+.++. +|. |.+||.. +......++...+..++|+|||++|+.++.++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 444555555444 37788999888887 674 7777865 22333445555566788999999999999999
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE--EEcCCCCEEEEE--------
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL--SLNAEQGLLYSG-------- 253 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l--~~~~~~~~l~s~-------- 253 (473)
.|++||+.+++....... +...+... .+++++.+++..
T Consensus 103 ~l~~~d~~~g~~~~~~~~--------------------------------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 150 (388)
T 3pe7_A 103 NLMRVDLATLEENVVYQV--------------------------------PAEWVGYGTWVANSDCTKLVGIEIRREDWV 150 (388)
T ss_dssp EEEEEETTTCCEEEEEEC--------------------------------CTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred eEEEEECCCCcceeeeec--------------------------------hhhcccccceeECCCCCeeccccccCcccc
Confidence 999999998865433321 22333222 347888887743
Q ss_pred --------------eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CC-EEEEEeCC------CcEEEEeCcccCCC
Q 012007 254 --------------SWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DS-LVFTGSAD------GTVKVWRRELQGKG 311 (473)
Q Consensus 254 --------------s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d------g~i~vwd~~~~~~~ 311 (473)
..+..|.+||+.+++... +..+...+..+.|+| ++ .|+.+..+ ..|.++|.....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-- 227 (388)
T 3pe7_A 151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-- 227 (388)
T ss_dssp CCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--
T ss_pred cccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--
Confidence 244679999999886544 444666789999999 87 55555543 367777765221
Q ss_pred cceeeeeeeccCC--ccEEEEEEccCCCEEEEeCC-CC----cEEEEecCCccccc-ceeecCcc-----eEEEEEecCC
Q 012007 312 TKHCLAQVLLKHE--NAVTALAVNQESAVVYCGSS-DG----LVNFWECEKHLSHG-GVLRGHKM-----AVLCLAAAGN 378 (473)
Q Consensus 312 ~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~-~~~~~~~~-----~v~~~~~~~~ 378 (473)
...+..+. ..+..++|+|+|+.|+..+. ++ .|++||+.++.... ....++.. .-..++++|+
T Consensus 228 -----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~ 302 (388)
T 3pe7_A 228 -----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGS 302 (388)
T ss_dssp -----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEEC
T ss_pred -----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCC
Confidence 12222233 35788999999987755332 22 39999998764321 11222110 1126889998
Q ss_pred EEEEE---------eCCCcEEEEecCCCCceeEEEEecCCCC-----------ceeEEEEecCCCCCcccccCCCccEEE
Q 012007 379 LVFSG---------SADRNICLWRREESGAHSCLAVLTGHTG-----------PVKCLAVEEDRDHDHEYHQKGDQRWTV 438 (473)
Q Consensus 379 ~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~h~~-----------~V~~l~~~~~~~~~~~~~~~~~~~~~l 438 (473)
.|+.. ..+..|++||+.++. +..+..|.. .+.+++|+||++. ++
T Consensus 303 ~l~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~------------l~ 366 (388)
T 3pe7_A 303 DAPVDVQDDSGYKIENDPFLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ------------IL 366 (388)
T ss_dssp CC------------CCCCEEEEEETTTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSE------------EE
T ss_pred cceeEeeeccccccCCCCEEEEEeccCCc----eEEeccccCcccccccccccCCCCccCCCCCCE------------EE
Confidence 77754 456689999998732 233344444 5788999999983 45
Q ss_pred EEeeCCCcEEEEEcCCC
Q 012007 439 YSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 439 ~s~s~Dg~v~iW~i~~~ 455 (473)
+++..+|...||.+.-.
T Consensus 367 ~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 367 FTSDVHGKPALYLATLP 383 (388)
T ss_dssp EEECTTSSCEEEEEECC
T ss_pred EEecCCCceeEEEEECC
Confidence 55556888888877543
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=1.5e-18 Score=163.02 Aligned_cols=245 Identities=9% Similarity=0.089 Sum_probs=166.6
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCc--cccccccCc-ccEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeeccc
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNS-GLVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGSL 204 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~-~~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~ 204 (473)
++.++.++++++.++.|++||... .+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++..........
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence 345677899999999999999753 333443332 2578999999998765 445689999999988765433322100
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC------------CCEEEEEcCCCee---
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD------------KTLKVWRISDCKC--- 269 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d------------g~v~vwd~~~~~~--- 269 (473)
+. .....+.+++|+|++++|++++.+ +.|.+||+.+++.
T Consensus 87 ~~--------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 140 (349)
T 1jmx_B 87 PG--------------------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 140 (349)
T ss_dssp TT--------------------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred cc--------------------------cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce
Confidence 00 012347789999999999999865 8999999988543
Q ss_pred eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeee-------------------------------
Q 012007 270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQ------------------------------- 318 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------------------------- 318 (473)
+..+.. ...+.++++++++.+++++ +.|.+||+..+..........
T Consensus 141 ~~~~~~-~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 141 VRTFPM-PRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp SEEEEC-CSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred eeeccC-CCcccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 334443 3468899999998665554 349999986432110000000
Q ss_pred -------------------------------eeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecC
Q 012007 319 -------------------------------VLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGH 366 (473)
Q Consensus 319 -------------------------------~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 366 (473)
....+...+..++|+| ++++++++ ++.|.+||+.+.........++
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~ 295 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH 295 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC
Confidence 0001122456788899 99999988 8899999998765443333444
Q ss_pred cceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec
Q 012007 367 KMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 367 ~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 407 (473)
.....++++++++|++++.++.|.+||+.+ .+.+..+.
T Consensus 296 ~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~---~~~~~~~~ 333 (349)
T 1jmx_B 296 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDT---LEKVKNIK 333 (349)
T ss_dssp CCCEEEECSSSSCEEEESBSSEEEEEETTT---TEEEEEEE
T ss_pred CccceEECCCCCEEEEecCCCeEEEEeccc---cceeeeee
Confidence 455567788898888888899999999988 34555544
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=4.6e-19 Score=183.55 Aligned_cols=275 Identities=8% Similarity=0.029 Sum_probs=180.7
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCc--cccccccCcc---cEEEEEEeCCCCEEEEEeC---------CCeEEEEeCCCC
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSG---LVKAIIISGDSNKIFTGHQ---------DGKIRIWKVSRK 193 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~---~V~~l~~s~~~~~l~s~~~---------dg~i~vwd~~~~ 193 (473)
+++++|++++++ .|+.|++||... ....+.+|.. .|.+++|+|||++|+.++. ++.|++||+.++
T Consensus 22 ~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g 100 (719)
T 1z68_A 22 NWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG 100 (719)
T ss_dssp EESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred EECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence 566778666655 589999999753 2333333333 3999999999999998876 789999999887
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 273 (473)
+...... ....+..++|+|||+.|+.+. ++.|++||+.+++.....
T Consensus 101 ~~~~~~~---------------------------------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 101 EFVRGNE---------------------------------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp EECCSSC---------------------------------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred cccccee---------------------------------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe
Confidence 5411000 124577899999999999986 789999999888765433
Q ss_pred -ecCCCce-----------------eEEEEcCCC-EEEEEeCCC----------------------------------cE
Q 012007 274 -NAHDDAI-----------------NSVVAGFDS-LVFTGSADG----------------------------------TV 300 (473)
Q Consensus 274 -~~~~~~v-----------------~~l~~~~~~-~l~s~~~dg----------------------------------~i 300 (473)
.++...| .++.|+|++ .|++++.|. .|
T Consensus 147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 2222222 489999998 777776542 78
Q ss_pred EEEeCcccCCCcceeee--eeeccCCccEEEEEEccCCCEEEEeCCC----CcEEEEe----cCCccccccee---ecCc
Q 012007 301 KVWRRELQGKGTKHCLA--QVLLKHENAVTALAVNQESAVVYCGSSD----GLVNFWE----CEKHLSHGGVL---RGHK 367 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~---~~~~ 367 (473)
++||+..+.......+. ..+..|...+..++|+||++++++.... ..|.+|| ..++....... .+|.
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~ 306 (719)
T 1z68_A 227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT 306 (719)
T ss_dssp EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS
T ss_pred EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC
Confidence 89998643210000110 1234688889999999998877764322 2488899 76654332221 3444
Q ss_pred ce-------EEEEEecCCEEEE--EeCCC--cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccE
Q 012007 368 MA-------VLCLAAAGNLVFS--GSADR--NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRW 436 (473)
Q Consensus 368 ~~-------v~~~~~~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~ 436 (473)
.. ...++++|+.|+. +..+| .|.+|++.++. ...+..+...|..+.+. ++..
T Consensus 307 ~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~~------------ 369 (719)
T 1z68_A 307 GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-TQDS------------ 369 (719)
T ss_dssp SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-CSSE------------
T ss_pred ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-eCCE------------
Confidence 33 3467888885543 44555 46666766532 34555566678888777 6662
Q ss_pred EEEEeeC----CCcEEEEEcCC
Q 012007 437 TVYSGSL----DKSVKVWRVSE 454 (473)
Q Consensus 437 ~l~s~s~----Dg~v~iW~i~~ 454 (473)
+++++.. ++.+++|.+..
T Consensus 370 i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 370 LFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEEecCCCCCceEEEEEEeC
Confidence 4455544 58899999864
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=2.1e-17 Score=156.35 Aligned_cols=271 Identities=10% Similarity=0.138 Sum_probs=167.5
Q ss_pred EEEEecCCEEEEeeCC----CcEEEeeCCc------cccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCe
Q 012007 127 YSLAASGDLLYTGSDS----KNIRVWKNLK------EFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNA 195 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~d----g~i~vwd~~~------~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~ 195 (473)
.+++++|++|++++.+ +.|.+|++.. .+.....+......+++ ++++|++++ .++.|.+|++.....
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~ 132 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA 132 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc
Confidence 5677789999999886 7999997532 12233335566778888 788887776 578999999975432
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCee-----
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKC----- 269 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~----- 269 (473)
....... ... ..........+...+.+++|+|++++|++++ .++.|.+|++.....
T Consensus 133 ~~~~~~~--------~~~----------~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~ 194 (361)
T 3scy_A 133 LLPASDV--------IEF----------KGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKE 194 (361)
T ss_dssp BCSCSEE--------EEC----------CCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCC
T ss_pred Cccccee--------EEc----------cCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccc
Confidence 2110000 000 0000000001344578899999999776665 478999999875431
Q ss_pred -e-------EEeecCCCceeEEEEcCCC-EEEEEe-CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE
Q 012007 270 -L-------ESINAHDDAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV 339 (473)
Q Consensus 270 -~-------~~~~~~~~~v~~l~~~~~~-~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 339 (473)
+ .....+......++|+|++ ++++++ .++.|.+|++..+.. ...........+......++|+|+|++|
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~~~~~~~~~~~~~~~~i~~spdg~~l 273 (361)
T 3scy_A 195 KFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEIQTVAADTVNAQGSGDIHLSPDGKYL 273 (361)
T ss_dssp CCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEEEEEESCSSCCCCEEEEEECTTSSEE
T ss_pred ceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEeEEEecCCCCCCCcccEEECCCCCEE
Confidence 1 1122345567899999998 566555 689999999873211 1111112223344567899999999988
Q ss_pred EEeCCC--CcEEEEecC--Ccc-cccceee-cCcceEEEEEecCCEEEEEe-CCCcEEEEecCCCCceeEEEEe-cCCCC
Q 012007 340 YCGSSD--GLVNFWECE--KHL-SHGGVLR-GHKMAVLCLAAAGNLVFSGS-ADRNICLWRREESGAHSCLAVL-TGHTG 411 (473)
Q Consensus 340 ~~~~~d--g~i~iwd~~--~~~-~~~~~~~-~~~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~h~~ 411 (473)
+++..+ +.|.+|++. ++. ....... +....-.+++++|++|++++ .++.|.+|+++.. ..+..... ..+..
T Consensus 274 ~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~-~g~~~~~~~~~~~~ 352 (361)
T 3scy_A 274 YASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQA-TGLLTDIKKDIKVD 352 (361)
T ss_dssp EEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTT-TCCEEECSCCEECS
T ss_pred EEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECC-CCcEeecceeeeCC
Confidence 776654 899999986 222 1111222 22334467788899888887 6789999766531 12333222 12345
Q ss_pred ceeEEEEe
Q 012007 412 PVKCLAVE 419 (473)
Q Consensus 412 ~V~~l~~~ 419 (473)
.+.||+|.
T Consensus 353 ~p~~v~~~ 360 (361)
T 3scy_A 353 KPVCLKFV 360 (361)
T ss_dssp SEEEEEEE
T ss_pred CCeEEEEc
Confidence 68888886
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=8.8e-19 Score=176.83 Aligned_cols=228 Identities=8% Similarity=0.023 Sum_probs=163.6
Q ss_pred cccEEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc-CCe
Q 012007 161 SGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY-DAV 238 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 238 (473)
..+|.+++|+|||++||.++. ||+++||++.+++..... .|. ..+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt---------------------------------~~~~~~~ 67 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN---------------------------------REPINSV 67 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC---------------------------------SSCCSEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee---------------------------------ccccccc
Confidence 567999999999999999887 999999998655422111 144 578
Q ss_pred eEEEEcCCCCEEEEEeC---CCCEEEEEcCC---CeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCC
Q 012007 239 SCLSLNAEQGLLYSGSW---DKTLKVWRISD---CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~---dg~v~vwd~~~---~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~ 310 (473)
..++|+|+ +++++++. +....+|.+.. +... .+.... .+....|++++ .+++.+.++.+.+||+..+.
T Consensus 68 ~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~- 143 (582)
T 3o4h_A 68 LDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGG- 143 (582)
T ss_dssp CEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-
T ss_pred ccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCc-
Confidence 99999999 78887775 45566665533 3222 332222 23355666665 55555555666699986331
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC----CcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEe
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD----GLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGS 384 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~ 384 (473)
..... .+.. .+++|+|||++|++++.+ +.|++||+.++... .+..|...+ .+++|||++|+++.
T Consensus 144 -----~~~l~-~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l~~~~~~~~~~~~SpDG~~l~~~~ 213 (582)
T 3o4h_A 144 -----LRELA-RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VFDSGEGSFSSASISPGMKVTAGLE 213 (582)
T ss_dssp -----EEEEE-EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE--EECCSSCEEEEEEECTTSCEEEEEE
T ss_pred -----EEEee-cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce--EeecCCCccccceECCCCCEEEEcc
Confidence 11112 2222 789999999999988776 78999998875443 455666555 55677899999888
Q ss_pred CCC--cEEEEecCCCCceeEEEEecCCCCceeEEE--------EecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 385 ADR--NICLWRREESGAHSCLAVLTGHTGPVKCLA--------VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 385 ~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~--------~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
.++ .|++||+.++ ... .+.+|...+..++ |+||+. ++++++.||.+++|++
T Consensus 214 ~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~-------------~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 214 TAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITWLGYLPDGR-------------LAVVARREGRSAVFID 274 (582)
T ss_dssp CSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEEEEECTTSC-------------EEEEEEETTEEEEEET
T ss_pred CCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccceeEcCCCc-------------EEEEEEcCCcEEEEEE
Confidence 888 8999999873 334 6678888888788 999996 8999999999999999
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=4.4e-18 Score=176.16 Aligned_cols=286 Identities=9% Similarity=-0.000 Sum_probs=180.8
Q ss_pred EEEEEecCCEEEEeeC---------CCcEEEeeCCccccc-cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe
Q 012007 126 IYSLAASGDLLYTGSD---------SKNIRVWKNLKEFSG-FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~---------dg~i~vwd~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
-.++++||++|++++. ++.|++||+...... ...-...+..++|+|||++|+.+. ++.|++|++.+++.
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP 142 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc
Confidence 4556778999998876 789999997633210 011135689999999999999885 78999999988764
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC---------eeEEEEcCCCCEEEEEeCCC---------
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------VSCLSLNAEQGLLYSGSWDK--------- 257 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------v~~l~~~~~~~~l~s~s~dg--------- 257 (473)
........ ...+..++.+. ..+++|+|||++|++++.|.
T Consensus 143 ~~l~~~~~-----------------------~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~ 199 (719)
T 1z68_A 143 FQITFNGR-----------------------ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYS 199 (719)
T ss_dssp EECCCCCB-----------------------TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEE
T ss_pred EEEecCCC-----------------------cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEee
Confidence 32111000 00011123222 25899999999999988652
Q ss_pred -------------------------CEEEEEcCCCeee--------EEeecCCCceeEEEEcCCCEEE-EEeCC----Cc
Q 012007 258 -------------------------TLKVWRISDCKCL--------ESINAHDDAINSVVAGFDSLVF-TGSAD----GT 299 (473)
Q Consensus 258 -------------------------~v~vwd~~~~~~~--------~~~~~~~~~v~~l~~~~~~~l~-s~~~d----g~ 299 (473)
.|++||+.+++.. ..+..|...+..++|+|++.++ +.... ..
T Consensus 200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~ 279 (719)
T 1z68_A 200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSV 279 (719)
T ss_dssp ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEE
T ss_pred ccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEE
Confidence 7889999887653 1233578889999999999544 43322 24
Q ss_pred EEEEe----CcccCCCcceeeeeee----ccCCccEE-----EEEEccCCCEEEE--eCCCC--cEEEEecCCcccccce
Q 012007 300 VKVWR----RELQGKGTKHCLAQVL----LKHENAVT-----ALAVNQESAVVYC--GSSDG--LVNFWECEKHLSHGGV 362 (473)
Q Consensus 300 i~vwd----~~~~~~~~~~~~~~~~----~~~~~~v~-----~l~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~ 362 (473)
|.+|| +..+. ..... ..|...+. .++|+|+|+.|+. ...+| .|.+||+.++. ...
T Consensus 280 l~~~d~~~~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~ 351 (719)
T 1z68_A 280 LSICDFREDWQTWD------CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQ 351 (719)
T ss_dssp EEEEEECSSSSSEE------CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEE
T ss_pred EEEEcccCCCCCCc------eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEe
Confidence 88888 54322 11222 35666665 7899999985543 55555 46667776543 223
Q ss_pred eecCcceEE--EEEecCCEEEEEeCC-----CcEEEEecCCC-Cc--eeEEEE-ecCCCCceeEEEEecCCCCCcccccC
Q 012007 363 LRGHKMAVL--CLAAAGNLVFSGSAD-----RNICLWRREES-GA--HSCLAV-LTGHTGPVKCLAVEEDRDHDHEYHQK 431 (473)
Q Consensus 363 ~~~~~~~v~--~~~~~~~~l~s~~~d-----g~i~iwd~~~~-~~--~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~~~ 431 (473)
+..+...+. .+. +++.|+..+.+ +.+++|.+... +. ..++.. +.+|...+..+.|+|+++.
T Consensus 352 lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~------- 423 (719)
T 1z68_A 352 ITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKY------- 423 (719)
T ss_dssp CSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSS-------
T ss_pred cccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCE-------
Confidence 333333332 233 77777666654 88999988641 11 122211 2236677889999999873
Q ss_pred CCccEEEEEeeCC--CcEEEEEcCCCC
Q 012007 432 GDQRWTVYSGSLD--KSVKVWRVSEHA 456 (473)
Q Consensus 432 ~~~~~~l~s~s~D--g~v~iW~i~~~~ 456 (473)
++++++.+ ..+.+|++.+++
T Consensus 424 -----l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 424 -----YALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp -----EEEEECCBSSCEEEEECSSSCC
T ss_pred -----EEEEcCCCCCCeEEEEECCCCC
Confidence 45555544 468889887654
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=1.2e-16 Score=150.89 Aligned_cols=265 Identities=12% Similarity=0.123 Sum_probs=178.9
Q ss_pred CCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeC----------CCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 141 DSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ----------DGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 141 ~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
.|+.|.+||.. +.+..+..+..+ .++|+|||++|+++.. ++.|.+||..+.+...........
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~--- 103 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR--- 103 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---
Confidence 37799999954 334455555555 8999999999999863 678999999887765444332100
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC--CCCEEEEEcCCCeeeEE-eecCCCceeEEEE
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLES-INAHDDAINSVVA 285 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~ 285 (473)
..+......++++|+|++|+++.. ++.|.+||+.+++.+.. +.... ...+.+
T Consensus 104 -----------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~ 158 (361)
T 2oiz_A 104 -----------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIP 158 (361)
T ss_dssp -----------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEE
T ss_pred -----------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEE
Confidence 002345677999999999999874 57899999999998887 65322 223455
Q ss_pred cCCC--EEEEEeCCCcEEEEeCcccCCCcceee-eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc-c
Q 012007 286 GFDS--LVFTGSADGTVKVWRRELQGKGTKHCL-AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG-G 361 (473)
Q Consensus 286 ~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~ 361 (473)
.|++ .+++.+.||.+.+|+....++...... ...+.....+ ..+.+.+++..++..+.++.|.++|+....... .
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG 237 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence 6654 788889999999999864222110000 0111122222 133346677777777788999999986432110 0
Q ss_pred ee------------ecCcceEEEEEecCCEEEEEeC-----------CCcEEEEecCCCCceeEEEEecCCCCceeEEEE
Q 012007 362 VL------------RGHKMAVLCLAAAGNLVFSGSA-----------DRNICLWRREESGAHSCLAVLTGHTGPVKCLAV 418 (473)
Q Consensus 362 ~~------------~~~~~~v~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~ 418 (473)
.. .........++++++.++++.. .+.|.+||+.+ .+.+..+..+. +.+|+|
T Consensus 238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t---~~~v~~i~~~~--p~~ia~ 312 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT---KQRVARIPGRD--ALSMTI 312 (361)
T ss_dssp EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT---TEEEEEEECTT--CCEEEE
T ss_pred cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC---CcEEEEEecCC--eeEEEE
Confidence 00 0111123578888887777643 34799999998 57788887776 999999
Q ss_pred ecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 419 EEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
+|+++ +|++++. +.|.+||..++
T Consensus 313 spdg~-------------~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 313 DQQRN-------------LMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ETTTT-------------EEEEECS-SCEEEEECSSS
T ss_pred CCCCC-------------EEEEeCC-CeEEEEECCCC
Confidence 99998 7777776 99999999887
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=8.7e-16 Score=140.12 Aligned_cols=247 Identities=10% Similarity=0.139 Sum_probs=167.0
Q ss_pred ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 158 KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 158 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
.++-..+.+++++++++++++...++.|.+||... +.......... ..++...
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~--------------------------~~~~~~~ 78 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGK--------------------------RDSQLLY 78 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSS--------------------------STTCBSS
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCC--------------------------CcccccC
Confidence 34566789999999999888888899999999873 32222111000 0014456
Q ss_pred eeEEEEc-CCCCEEEEEeC-CCCEEEEEcCCCeeeEEeec-CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc
Q 012007 238 VSCLSLN-AEQGLLYSGSW-DKTLKVWRISDCKCLESINA-HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 238 v~~l~~~-~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~-~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
+..+++. +++.++++... ++.|.+|| .+++.+..+.. +...+.++++.+++ ++++...++.|.+||... .
T Consensus 79 p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----~ 152 (286)
T 1q7f_A 79 PNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-----N 152 (286)
T ss_dssp EEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-----C
T ss_pred ceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-----C
Confidence 8899994 66665555533 78999999 67777776643 34578899999988 555556688999999641 1
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee--cCcceE--EEEEecCCEEEEEeCCC-c
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR--GHKMAV--LCLAAAGNLVFSGSADR-N 388 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v--~~~~~~~~~l~s~~~dg-~ 388 (473)
.........+...+..++++++++++++...++.|++||...... ..+. ++.... ++++++|+++++...++ .
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~--~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~ 230 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL--RQIGGEGITNYPIGVGINSNGEILIADNHNNFN 230 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE--EEESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE--EEEccCCccCCCcEEEECCCCCEEEEeCCCCEE
Confidence 111111123445689999999999888888899999999864321 1222 212233 44556788888888776 9
Q ss_pred EEEEecCCCCceeEEEEecCCC--CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 389 ICLWRREESGAHSCLAVLTGHT--GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
|.+|+... ..+..+..+. ..+.+++++|++. ++++ +.|+.|++|++....+
T Consensus 231 i~~~~~~g----~~~~~~~~~~~~~~~~~i~~~~~g~-------------l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 231 LTIFTQDG----QLISALESKVKHAQCFDVALMDDGS-------------VVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEEECTTS----CEEEEEEESSCCSCEEEEEEETTTE-------------EEEE-ETTTEEEEEECSCCCC
T ss_pred EEEECCCC----CEEEEEcccCCCCcceeEEECCCCc-------------EEEE-CCCCeEEEEEcccccc
Confidence 99999654 3344443332 3478999999986 6666 5799999999876543
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=2.1e-16 Score=149.71 Aligned_cols=241 Identities=8% Similarity=0.053 Sum_probs=157.5
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCc--ccEEEEEEeCCCCE--EEEEe-------------CCCeEEE
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNS--GLVKAIIISGDSNK--IFTGH-------------QDGKIRI 187 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~--~~V~~l~~s~~~~~--l~s~~-------------~dg~i~v 187 (473)
.+++++|++|++++.+ .|.+|++. ..+.....+. +.+.+++|+|+|++ ++++. .+|.+.+
T Consensus 45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v 123 (365)
T 1jof_A 45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV 123 (365)
T ss_dssp EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence 4566789999999887 99999864 2221111111 33566899999984 55553 6899999
Q ss_pred EeCCC-CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcC
Q 012007 188 WKVSR-KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRIS 265 (473)
Q Consensus 188 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~ 265 (473)
|++.. ++........ ...+...+.+++|+|+|++|+++.. ++.|++||+.
T Consensus 124 ~~~~~~g~~~~~~~~~----------------------------~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 124 FSVSETGKLEKNVQNY----------------------------EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL 175 (365)
T ss_dssp EEECTTCCEEEEEEEE----------------------------ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EccCCCCcCcceEeeE----------------------------EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC
Confidence 99974 4322111100 0014567899999999999888764 6789999998
Q ss_pred -CCeee--EEee--cCCCceeEEEEcCCC-EEEEEe-CCCcEEEEeCcccCCCcc--eeeeeeec----cCCc------c
Q 012007 266 -DCKCL--ESIN--AHDDAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTK--HCLAQVLL----KHEN------A 326 (473)
Q Consensus 266 -~~~~~--~~~~--~~~~~v~~l~~~~~~-~l~s~~-~dg~i~vwd~~~~~~~~~--~~~~~~~~----~~~~------~ 326 (473)
+++.. ..+. .|...+..++|+|++ ++++++ .++.|.+|++........ ......+. +|.. .
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 255 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY 255 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc
Confidence 67643 3343 245678999999998 666655 478999998753111000 00111111 2222 5
Q ss_pred EEEEE-EccCCCEEEEeCCCC------cEEEEecC-Cccccc-c-eeecC--cceEEEEEe---cCCEEEEEeCC-CcEE
Q 012007 327 VTALA-VNQESAVVYCGSSDG------LVNFWECE-KHLSHG-G-VLRGH--KMAVLCLAA---AGNLVFSGSAD-RNIC 390 (473)
Q Consensus 327 v~~l~-~~~~~~~l~~~~~dg------~i~iwd~~-~~~~~~-~-~~~~~--~~~v~~~~~---~~~~l~s~~~d-g~i~ 390 (473)
+..++ |+|+|++|+++..+. .|.+|++. ++.... . ....+ ...-.+++| +|++|++++.+ +.|.
T Consensus 256 ~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~ 335 (365)
T 1jof_A 256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE 335 (365)
T ss_dssp EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred cccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEE
Confidence 88999 999999988775432 89999986 332211 0 12212 233467889 89999998865 8999
Q ss_pred EEecCC
Q 012007 391 LWRREE 396 (473)
Q Consensus 391 iwd~~~ 396 (473)
+|+++.
T Consensus 336 v~~~~~ 341 (365)
T 1jof_A 336 IYRWKD 341 (365)
T ss_dssp EEEEET
T ss_pred EEEEch
Confidence 999986
No 166
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=1.3e-15 Score=143.00 Aligned_cols=248 Identities=12% Similarity=0.101 Sum_probs=163.9
Q ss_pred cCCEEEEee---------CCCcEEEeeCCcc-ccccccCcccEEEEEEeCCCCEEEEEeCC---C--eEEEEeCCCCCee
Q 012007 132 SGDLLYTGS---------DSKNIRVWKNLKE-FSGFKSNSGLVKAIIISGDSNKIFTGHQD---G--KIRIWKVSRKNAS 196 (473)
Q Consensus 132 ~g~~l~tg~---------~dg~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g--~i~vwd~~~~~~~ 196 (473)
||+.++... .++.|.+||.... ...+ ..+..++|+|||++|+.++.+ + .|.+|++.+++..
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~ 98 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK 98 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE
Confidence 888776542 2567889986532 2223 568899999999999987754 3 3778888776533
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC--------------------
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD-------------------- 256 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-------------------- 256 (473)
.... +.. +..++|+|+++.|+.++.+
T Consensus 99 ~l~~---------------------------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 144 (347)
T 2gop_A 99 KILE---------------------------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDL 144 (347)
T ss_dssp EEEE---------------------------------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC----
T ss_pred EEEc---------------------------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCc
Confidence 2211 223 8899999999988888632
Q ss_pred -------CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCC-------cEEEEeCcccCCCcceeeeeeecc
Q 012007 257 -------KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADG-------TVKVWRRELQGKGTKHCLAQVLLK 322 (473)
Q Consensus 257 -------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~ 322 (473)
..|.+||+.+++.+..+.. . .+..+.|+|+++++++..++ ...+|.+. .+ .. ..+..
T Consensus 145 ~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~--~~----~~l~~ 215 (347)
T 2gop_A 145 GFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DG--KE----EKMFE 215 (347)
T ss_dssp -----CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TT--EE----EEEEE
T ss_pred ccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC-CC--ce----EEecc
Confidence 5699999998887455554 3 78899999999555555442 44566554 22 11 11222
Q ss_pred CCccEEEEEEccCCCEEEEeCCC--------CcEEEEecCCcccccceeecCcceEEE-EEe-cCCEEEEEeCCCcEEEE
Q 012007 323 HENAVTALAVNQESAVVYCGSSD--------GLVNFWECEKHLSHGGVLRGHKMAVLC-LAA-AGNLVFSGSADRNICLW 392 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~-~~~~l~s~~~dg~i~iw 392 (473)
+ ..+..+ +|+|+.|+.++.+ ..|.+|| ++. ......++...+.. +.+ ++ ++++++.++.++||
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~ 288 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY 288 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE
Confidence 2 444444 9999988776643 3688888 322 22233344444443 333 56 88899999999999
Q ss_pred ecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcE-EEEEcC
Q 012007 393 RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSV-KVWRVS 453 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v-~iW~i~ 453 (473)
+.+ + .... +..+.+.|.+++|++ . ++++++.++.. .||.+.
T Consensus 289 -~~~-g--~~~~-~~~~~~~v~~~~~s~--~-------------~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 289 -IWD-G--EIKP-IAKGRHWIMGFDVDE--I-------------VVYLKETATRLRELFTWD 330 (347)
T ss_dssp -EES-S--SEEE-EECSSSEEEEEEESS--S-------------EEEEEECSSSCCEEEEES
T ss_pred -EcC-C--ceEE-EecCCCeEEeeeeeC--c-------------EEEEEcCCCChHHheEeC
Confidence 874 2 2333 334577899999999 4 77777777765 888876
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.74 E-value=3.6e-16 Score=160.20 Aligned_cols=287 Identities=10% Similarity=0.029 Sum_probs=183.1
Q ss_pred eeeeecccEEEEEecCCEEE--Ee--eCCCcEEEeeC--CccccccccCcccEE---------EEEEe--CCCCE-EEEE
Q 012007 118 SIVRKEGHIYSLAASGDLLY--TG--SDSKNIRVWKN--LKEFSGFKSNSGLVK---------AIIIS--GDSNK-IFTG 179 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~g~~l~--tg--~~dg~i~vwd~--~~~~~~~~~h~~~V~---------~l~~s--~~~~~-l~s~ 179 (473)
.+.+|...|..++++++.++ .. +.++...||.. ......+..|...+. ...|+ |||++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 34567788888888877444 33 34788999973 233455666666666 66676 99988 7765
Q ss_pred eC-CCeEEEEeCC--C-CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC
Q 012007 180 HQ-DGKIRIWKVS--R-KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW 255 (473)
Q Consensus 180 ~~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~ 255 (473)
+. +..|.+|++. . +....... .+. ..|...+..++|+|||+.|++++.
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~---~~~-------------------------~~~~~~~~~~~~spDg~~l~~~~~ 149 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTP---VSA-------------------------VGGGLRWADPVLLPERGEVWCMAE 149 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSC---CCC-------------------------STTCEEEEEEEEETTTTEEEEEEE
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccC---Ccc-------------------------CCCCccccCcEECCCCCEEEEEEe
Confidence 54 5667777765 2 32211000 000 004456789999999999999987
Q ss_pred C----------CCEEEEEcCC------CeeeEEee-cCCCceeEEEEcCCC-EEEEEeCC--------CcEEEEeCcccC
Q 012007 256 D----------KTLKVWRISD------CKCLESIN-AHDDAINSVVAGFDS-LVFTGSAD--------GTVKVWRRELQG 309 (473)
Q Consensus 256 d----------g~v~vwd~~~------~~~~~~~~-~~~~~v~~l~~~~~~-~l~s~~~d--------g~i~vwd~~~~~ 309 (473)
+ ..|++||+.+ ++. ..+. .+...+..+.|+|++ .|+.++.+ ..|.+||+...+
T Consensus 150 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 150 EFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp EECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred cccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence 7 5899999987 544 4444 556778889999999 67666644 379999986211
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC--cEEEEecCCcccccceeecCcc----------eEEEEEecC
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG--LVNFWECEKHLSHGGVLRGHKM----------AVLCLAAAG 377 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~----------~v~~~~~~~ 377 (473)
...........+...+..++|+|||++++++..++ .|.+||+.++... .....+.. ....+++++
T Consensus 229 --~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 229 --RFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp --CEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred --cccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccCceEeEeCCC
Confidence 01122333445578899999999999888888888 5666666443221 12222211 124455678
Q ss_pred CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEE-EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 378 NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCL-AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 378 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
.+++++.. +.++||.++... ..+..+..|...+..+ +++.+.- ++++++.+....||.+
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~s~~~~~~-------------~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPES--GELVDAAGPWTEWAATLTVSGTRA-------------VGVAASPRTAYEVVEL 365 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTT--TEEEECCSSCCEEEEEEEEETTEE-------------EEEEEETTEEEEEEEE
T ss_pred EEEEEEEc-CccEEEEEECCC--CcEEEecCCCCeEEEEEecCCCEE-------------EEEEcCCCCCCEEEEE
Confidence 99999998 999999554211 2256677787778777 4443322 5566666655555544
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=7.3e-17 Score=154.36 Aligned_cols=286 Identities=10% Similarity=0.027 Sum_probs=170.0
Q ss_pred EEEecCCEEEEeeCC---CcEEEeeCCc-cccccccCccc-EEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 128 SLAASGDLLYTGSDS---KNIRVWKNLK-EFSGFKSNSGL-VKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 128 ~~~~~g~~l~tg~~d---g~i~vwd~~~-~~~~~~~h~~~-V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
+++++|++|+..... ..|.+||... ....+..+... ...+.|+|||++|+.++.++.|++||+.+++........
T Consensus 42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~ 121 (396)
T 3c5m_A 42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD 121 (396)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred cCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc
Confidence 466778887766543 3677778653 22333333333 334789999999999999999999999887654333311
Q ss_pred ccc-ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-----eCCCCEEEEEcCCCeeeEEeecC
Q 012007 203 SLP-TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-----SWDKTLKVWRISDCKCLESINAH 276 (473)
Q Consensus 203 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-----s~dg~v~vwd~~~~~~~~~~~~~ 276 (473)
... .....+...... .... . ....+.|+|+++.++.+ ..+..|.+||+.+++..... .+
T Consensus 122 ~~~~~~g~~l~~~~~~-~~~~-------~------~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~ 186 (396)
T 3c5m_A 122 EEWKGYGTWVANSDCT-KLVG-------I------EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QD 186 (396)
T ss_dssp TTEEEEEEEEECTTSS-EEEE-------E------EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EE
T ss_pred cccCCCCCEEEeccCC-cccc-------c------cccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cC
Confidence 100 000000000000 0000 0 00113577888877654 35678999999888765544 46
Q ss_pred CCceeEEEEcC-CC-EEEEEeCC------CcEEEEeCcccCCCcceeeeeeeccC--CccEEEEEEccCCCEEEEeCCC-
Q 012007 277 DDAINSVVAGF-DS-LVFTGSAD------GTVKVWRRELQGKGTKHCLAQVLLKH--ENAVTALAVNQESAVVYCGSSD- 345 (473)
Q Consensus 277 ~~~v~~l~~~~-~~-~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~~~~d- 345 (473)
...+..+.|+| ++ .|+..+.+ ..|.+||+.... . ..+..+ ...+..++|+|+|++|+..+.+
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN------V-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC------C-EESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc------e-eEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 67788999999 56 45555443 357888875221 1 111122 3358889999999977766443
Q ss_pred ----CcEEEEecCCcccccceeecCcceEEEEEe-cCCEEEEEe----------------CCCcEEEEecCCCCceeEEE
Q 012007 346 ----GLVNFWECEKHLSHGGVLRGHKMAVLCLAA-AGNLVFSGS----------------ADRNICLWRREESGAHSCLA 404 (473)
Q Consensus 346 ----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~----------------~dg~i~iwd~~~~~~~~~~~ 404 (473)
+.|++||+.++.... ........ ..+++ +|++++.++ .+..|++||+.++.. ..
T Consensus 260 ~~~~~~l~~~d~~~g~~~~-l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~-- 334 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEE-VMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QK-- 334 (396)
T ss_dssp TTCCEEEEEECTTTCCEEE-EEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CE--
T ss_pred CCccceEEEEECCCCCeEE-eeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EE--
Confidence 449999997654321 11111112 67888 999888765 347899999987432 22
Q ss_pred EecCCCC-----------ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 405 VLTGHTG-----------PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 405 ~~~~h~~-----------~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+..+.. .+..++|+|+++. +++++..++...||.+.
T Consensus 335 -l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~------------l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 335 -LCKHSTSWDVLDGDRQITHPHPSFTPNDDG------------VLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp -EEECCCCCCCBTTBSSTTCCCCEECTTSSE------------EEEEECTTSSCEEEEEE
T ss_pred -ccCCCCccccccccccCCCCCceEccCCCe------------EEEEecCCCCceEEEEE
Confidence 223333 2567899999872 33444456666666654
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=3.5e-16 Score=160.32 Aligned_cols=225 Identities=10% Similarity=0.036 Sum_probs=152.9
Q ss_pred ecCCE-EEEeeC-CCcEEEeeCC----cccccccc-----CcccEEEEEEeCCCCEEEEEeCC----------CeEEEEe
Q 012007 131 ASGDL-LYTGSD-SKNIRVWKNL----KEFSGFKS-----NSGLVKAIIISGDSNKIFTGHQD----------GKIRIWK 189 (473)
Q Consensus 131 ~~g~~-l~tg~~-dg~i~vwd~~----~~~~~~~~-----h~~~V~~l~~s~~~~~l~s~~~d----------g~i~vwd 189 (473)
|||+. |+.++. +..|.+|+.. .....+.. |...+..++|+|||++|+.++.| ..|++||
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 78887 666554 6677777865 55555655 67789999999999999998877 5899999
Q ss_pred CCC------CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC------
Q 012007 190 VSR------KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK------ 257 (473)
Q Consensus 190 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg------ 257 (473)
+.+ +...... . .+...+..++|+|||++|+.++.++
T Consensus 168 ~~~~~~~~~~~~~~l~--~------------------------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 168 LDGSAAADRSAVRELS--D------------------------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWE 215 (662)
T ss_dssp TTSTTTTCGGGSEESS--C------------------------------SCSSEECCCEECTTSSEEEEEEECTTCCTTT
T ss_pred CCCCccccCCceeEEE--e------------------------------cCCCcccCceECCCCCEEEEEECCCCCCCCC
Confidence 987 3321110 0 1445677889999999999887553
Q ss_pred --CEEEEEcC-CC---eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCc--EEEEeCcccCCCcceeeeeeeccCCcc--
Q 012007 258 --TLKVWRIS-DC---KCLESINAHDDAINSVVAGFDS-LVFTGSADGT--VKVWRRELQGKGTKHCLAQVLLKHENA-- 326 (473)
Q Consensus 258 --~v~vwd~~-~~---~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~-- 326 (473)
.|++||+. ++ +.......+...+..+.|+|++ +++++..++. |.+||+..+. .......+...
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~------~~~l~~~~~~~~~ 289 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA------ATQLCRREEEFAG 289 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC------EEESSCCSSBSSC
T ss_pred CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc------eeecccccccccC
Confidence 79999998 57 4444445567889999999998 6677777884 5555543211 11111122111
Q ss_pred ------EEEEEEccCCCEEEEeCCCCcEEEE--ecCCcccccceeecCcceEEEE-EecCCEEE--EEeCCCc--EEEEe
Q 012007 327 ------VTALAVNQESAVVYCGSSDGLVNFW--ECEKHLSHGGVLRGHKMAVLCL-AAAGNLVF--SGSADRN--ICLWR 393 (473)
Q Consensus 327 ------v~~l~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~--s~~~dg~--i~iwd 393 (473)
+..++|++++++++++.. +.++|| |+.++. ...+..+...+..+ ++++..++ +++.+.. |.+||
T Consensus 290 p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 290 PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE--LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE--EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred ccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc--EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence 567899999999999998 999999 544433 23455666677777 88876433 3444544 55556
Q ss_pred cCC
Q 012007 394 REE 396 (473)
Q Consensus 394 ~~~ 396 (473)
+.+
T Consensus 367 ~~~ 369 (662)
T 3azo_A 367 TVT 369 (662)
T ss_dssp TTT
T ss_pred CCC
Confidence 555
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=2.4e-15 Score=140.11 Aligned_cols=199 Identities=9% Similarity=0.054 Sum_probs=137.9
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe-eeEEe---------ecCCCceeEEEEcC-CC-EEEEEe-CCCcE
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK-CLESI---------NAHDDAINSVVAGF-DS-LVFTGS-ADGTV 300 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~-~~~~~---------~~~~~~v~~l~~~~-~~-~l~s~~-~dg~i 300 (473)
+......++++++++++++...++.|++||..... .+..+ ..+......+++.+ ++ ++++.+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 44568899999999988888888999999975442 45555 23445688999998 66 445554 58999
Q ss_pred EEEeCcccCCCcceeeeeeec----------cCCccEEEEEEccC-CCEEEEeCCCCcEEEEecCCccccccee-ecCcc
Q 012007 301 KVWRRELQGKGTKHCLAQVLL----------KHENAVTALAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVL-RGHKM 368 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~----------~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~ 368 (473)
++|+... . ....+. .+......|+++|+ +.++++...++.|++||..++....... ..+..
T Consensus 169 ~~~~~~g-~------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~ 241 (329)
T 3fvz_A 169 VQFSPSG-K------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGR 241 (329)
T ss_dssp EEECTTS-C------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTT
T ss_pred EEEcCCC-C------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCC
Confidence 9999531 1 111111 12234889999998 7778888889999999998543332211 12333
Q ss_pred eEEEE--Ee------cCCEEEEEeCCCcEEEEecCCCCceeEEEEe---cCCCCceeEEEEecCCCCCcccccCCCccEE
Q 012007 369 AVLCL--AA------AGNLVFSGSADRNICLWRREESGAHSCLAVL---TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWT 437 (473)
Q Consensus 369 ~v~~~--~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~ 437 (473)
.+..+ .+ +|+.+++...+..|++|+..++ +.+..+ .++...+.+|+++|++. +
T Consensus 242 ~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~-------------l 305 (329)
T 3fvz_A 242 NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGT-------------V 305 (329)
T ss_dssp CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSE-------------E
T ss_pred CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCC-------------E
Confidence 33333 33 3444444445568999999884 555555 46777899999999996 8
Q ss_pred EEEeeCCCcEEEEEcCCC
Q 012007 438 VYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 438 l~s~s~Dg~v~iW~i~~~ 455 (473)
+++...++.|++|++...
T Consensus 306 yvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 306 YIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEESSSCCEEEEEEEEC
T ss_pred EEEECCCCEEEEEeCCcc
Confidence 899999999999998753
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.72 E-value=2.1e-16 Score=163.89 Aligned_cols=250 Identities=11% Similarity=0.094 Sum_probs=158.9
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcc-----cEEEEEEeCCCCEEEEEeCC---------CeEEEEeCC
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSG-----LVKAIIISGDSNKIFTGHQD---------GKIRIWKVS 191 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~-----~V~~l~~s~~~~~l~s~~~d---------g~i~vwd~~ 191 (473)
.+.++|++++++ ||+|++||.. +....+.+|.. ....+.|||||++|+.++.+ +.+.+||+.
T Consensus 23 ~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~ 100 (740)
T 4a5s_A 23 RWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN 100 (740)
T ss_dssp EECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred EECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC
Confidence 556678888886 8999999965 33334455542 23458999999999998876 566799999
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
+++..... .|...+...+|+|||+.|+.+. |+.|++||+.+++..+
T Consensus 101 ~~~~~~l~---------------------------------~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~ 146 (740)
T 4a5s_A 101 KRQLITEE---------------------------------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR 146 (740)
T ss_dssp TTEECCSS---------------------------------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred CCcEEEcc---------------------------------cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE
Confidence 87643211 2667789999999999999885 6899999998877544
Q ss_pred Ee-ecCCCce-----------------eEEEEcCCC-EEEEEeCCC----------------------------------
Q 012007 272 SI-NAHDDAI-----------------NSVVAGFDS-LVFTGSADG---------------------------------- 298 (473)
Q Consensus 272 ~~-~~~~~~v-----------------~~l~~~~~~-~l~s~~~dg---------------------------------- 298 (473)
.. .++...+ ..+.|+||+ .|+.++.|.
T Consensus 147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~ 226 (740)
T 4a5s_A 147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNP 226 (740)
T ss_dssp CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCC
T ss_pred EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCC
Confidence 22 2222222 358899999 566654322
Q ss_pred --cEEEEeCcc---cCCCcceeeee--eeccCCccEEEEEEccCCCEEEEeC----CCCcEEEEecCCcc----c--ccc
Q 012007 299 --TVKVWRREL---QGKGTKHCLAQ--VLLKHENAVTALAVNQESAVVYCGS----SDGLVNFWECEKHL----S--HGG 361 (473)
Q Consensus 299 --~i~vwd~~~---~~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~----~dg~i~iwd~~~~~----~--~~~ 361 (473)
.|++||+.. +.......+.. .+.+|...+..++|+|||+.++... .+..|.+||+.++. . ...
T Consensus 227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~ 306 (740)
T 4a5s_A 227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ 306 (740)
T ss_dssp EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC
T ss_pred eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE
Confidence 466777764 21000000000 0113777899999999999666542 33479999998765 1 111
Q ss_pred e-eecCcce-------EEEEEecCCEEE-EEe-CCC--cEEEEecCCCCceeEEEEecCCCCceeEEE
Q 012007 362 V-LRGHKMA-------VLCLAAAGNLVF-SGS-ADR--NICLWRREESGAHSCLAVLTGHTGPVKCLA 417 (473)
Q Consensus 362 ~-~~~~~~~-------v~~~~~~~~~l~-s~~-~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 417 (473)
. ..+|... -..+++||+.|+ ..+ .+| .|++||+.++ ... .+......|..+.
T Consensus 307 l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~---~~~-~lT~g~~~v~~~~ 370 (740)
T 4a5s_A 307 HIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK---DCT-FITKGTWEVIGIE 370 (740)
T ss_dssp EEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS---SCE-ESCCSSSCEEEEE
T ss_pred eeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC---ceE-ecccCCEEEEEEE
Confidence 1 1334322 346789999776 555 333 5788888763 222 3333344565554
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=4.6e-15 Score=138.44 Aligned_cols=246 Identities=8% Similarity=0.070 Sum_probs=162.2
Q ss_pred CCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
+..++..+.++.+++| ..+....+..+...+.+++|+++|++++++..++.|.+||..+++......
T Consensus 17 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~------------ 83 (333)
T 2dg1_A 17 SNSAVPIISESELQTI-TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV------------ 83 (333)
T ss_dssp GGCSSCCCCGGGSCEE-ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE------------
T ss_pred ccceeEEeecccCccc-ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee------------
Confidence 3344555667788888 344455556666778999999999988888889999999998776432211
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC----CCEEEEEcCCCeeeEEee--cCCCceeEEEEc
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD----KTLKVWRISDCKCLESIN--AHDDAINSVVAG 286 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d----g~v~vwd~~~~~~~~~~~--~~~~~v~~l~~~ 286 (473)
.+...+.+++++++++++++...+ +.|.+||..+++....+. .+...+.++++.
T Consensus 84 --------------------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d 143 (333)
T 2dg1_A 84 --------------------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD 143 (333)
T ss_dssp --------------------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC
T ss_pred --------------------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC
Confidence 145678999999999888777666 689999988776543332 244578999999
Q ss_pred CCCEEEEEeCC-------CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEE-EeCCCCcEEEEecCCc-c
Q 012007 287 FDSLVFTGSAD-------GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY-CGSSDGLVNFWECEKH-L 357 (473)
Q Consensus 287 ~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~-~ 357 (473)
+++.++.++.. +.|..+|..... . ..+......+..++|+|+++.|+ +...++.|.+||+.+. .
T Consensus 144 ~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~----~---~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~ 216 (333)
T 2dg1_A 144 SKGGFYFTDFRGYSTNPLGGVYYVSPDFRT----V---TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV 216 (333)
T ss_dssp TTSCEEEEECCCBTTBCCEEEEEECTTSCC----E---EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred CCCCEEEEeccccccCCCceEEEEeCCCCE----E---EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc
Confidence 99855555442 445555543111 1 11112234578899999998654 4456789999998632 1
Q ss_pred ccc----ce---eecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC------CceeEEEEecCC
Q 012007 358 SHG----GV---LRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT------GPVKCLAVEEDR 422 (473)
Q Consensus 358 ~~~----~~---~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~------~~V~~l~~~~~~ 422 (473)
... .. ..++ ... ++++++|+++++...++.|.+||... ..+..+..+. ..+.+++|++++
T Consensus 217 ~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g----~~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 217 TIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG----YPIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp SEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTS----CEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred CcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCC----CEEEEEEcCCCccccccCcceEEECCCC
Confidence 111 00 1111 233 44455688888877789999999853 3344443332 268999999887
Q ss_pred C
Q 012007 423 D 423 (473)
Q Consensus 423 ~ 423 (473)
.
T Consensus 292 ~ 292 (333)
T 2dg1_A 292 N 292 (333)
T ss_dssp C
T ss_pred C
Confidence 5
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.70 E-value=2.1e-14 Score=130.96 Aligned_cols=231 Identities=12% Similarity=0.154 Sum_probs=156.9
Q ss_pred cccEEEEEe--cCCEEEEeeCCCcEEEeeCCcc-ccccc------cCcccEEEEEEe-CCCCEEEEEeC-CCeEEEEeCC
Q 012007 123 EGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-FSGFK------SNSGLVKAIIIS-GDSNKIFTGHQ-DGKIRIWKVS 191 (473)
Q Consensus 123 ~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~-~~~~~------~h~~~V~~l~~s-~~~~~l~s~~~-dg~i~vwd~~ 191 (473)
-....++++ +|+++++...++.|.+||.... +..+. ++...+..+++. ++++++++... ++.|++||.
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~- 107 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 107 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-
Confidence 344556654 5788888888999999986532 22222 344678999995 66766655533 889999994
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
+++....... .+...+.+++++++++++++...++.|.+||. +++.+.
T Consensus 108 ~g~~~~~~~~-------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~ 155 (286)
T 1q7f_A 108 YGQFVRKFGA-------------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLH 155 (286)
T ss_dssp TSCEEEEECT-------------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEE
T ss_pred CCcEEEEecC-------------------------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEE
Confidence 4433221110 13456789999999998887777899999996 466666
Q ss_pred Eee--cCCCceeEEEEcCCCE-EEEEeCCCcEEEEeCcccCCCcceeeeeee--ccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 272 SIN--AHDDAINSVVAGFDSL-VFTGSADGTVKVWRRELQGKGTKHCLAQVL--LKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 272 ~~~--~~~~~v~~l~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
.+. .+...+..+++.+++. +++...++.|++||... . ....+ .++...+..++++++|+++++...++
T Consensus 156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----~--~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-----Q--YLRQIGGEGITNYPIGVGINSNGEILIADNHNN 228 (286)
T ss_dssp EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-----C--EEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-----C--EEEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence 654 3445789999999884 44556689999999741 1 11222 22336789999999999888888776
Q ss_pred -cEEEEecCCcccccceeecCc--ce--EEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 347 -LVNFWECEKHLSHGGVLRGHK--MA--VLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 347 -~i~iwd~~~~~~~~~~~~~~~--~~--v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.|.+||.... .. ..+..+. .. -.+++++|+++++ +.|+.|++|++..
T Consensus 229 ~~i~~~~~~g~-~~-~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 229 FNLTIFTQDGQ-LI-SALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CEEEEECTTSC-EE-EEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEEEEECCCCC-EE-EEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 9999996542 22 2222222 12 3556677877766 6799999999865
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.70 E-value=7.6e-16 Score=159.65 Aligned_cols=246 Identities=9% Similarity=0.036 Sum_probs=159.1
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
.....+.|+|||++|+++ ||.|++||+.+++........... .+......+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~ 67 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD---------------------------EFGHSINDY 67 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT---------------------------TCCSCCCEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh---------------------------hhcccccce
Confidence 346689999999988886 999999999988754332211000 011223458
Q ss_pred EEcCCCCEEEEEeCC---------CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 242 SLNAEQGLLYSGSWD---------KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 242 ~~~~~~~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
.|+|||++|+.++.+ +.+.+||+.+++... +..+...+....|+|+| .|+.+ .++.|++|++..+..
T Consensus 68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~- 144 (740)
T 4a5s_A 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS- 144 (740)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC-
T ss_pred EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCce-
Confidence 899999999999876 567799999988653 55677789999999999 55555 578999999864321
Q ss_pred cceeeeeeeccCCccE-----------------EEEEEccCCCEEEEeCCCC----------------------------
Q 012007 312 TKHCLAQVLLKHENAV-----------------TALAVNQESAVVYCGSSDG---------------------------- 346 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v-----------------~~l~~~~~~~~l~~~~~dg---------------------------- 346 (473)
......++...+ ..+.|+|||+.|+..+.|.
T Consensus 145 ----~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~ 220 (740)
T 4a5s_A 145 ----YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK 220 (740)
T ss_dssp ----EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred ----EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence 111112222222 3589999999998874321
Q ss_pred --------cEEEEecCC---ccc--ccceee-----cCcceE--EEEEecCCEEEEEeC----CCcEEEEecCCCCc-ee
Q 012007 347 --------LVNFWECEK---HLS--HGGVLR-----GHKMAV--LCLAAAGNLVFSGSA----DRNICLWRREESGA-HS 401 (473)
Q Consensus 347 --------~i~iwd~~~---~~~--~~~~~~-----~~~~~v--~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~-~~ 401 (473)
.|++||+.+ +.. ...... +|...+ ..+++||++++.... +..|.+||+.++.. ..
T Consensus 221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~ 300 (740)
T 4a5s_A 221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN 300 (740)
T ss_dssp TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc
Confidence 477888877 521 111111 244444 457788987665532 34799999988541 00
Q ss_pred EE--EEe--cCCCCcee-----EEEEecCCCCCcccccCCCccEEEE-Eee-CCC--cEEEEEcCCCC
Q 012007 402 CL--AVL--TGHTGPVK-----CLAVEEDRDHDHEYHQKGDQRWTVY-SGS-LDK--SVKVWRVSEHA 456 (473)
Q Consensus 402 ~~--~~~--~~h~~~V~-----~l~~~~~~~~~~~~~~~~~~~~~l~-s~s-~Dg--~v~iW~i~~~~ 456 (473)
+. ..+ .+|...|. ..+|+||++ .|+ ..+ .+| .|++|++..+.
T Consensus 301 ~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~-------------~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGN-------------SFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp ECGGGCEEEECSSSCSSSSSCCCCEECTTSS-------------EEEEEEECTTSCEEEEEEETTCSS
T ss_pred eeEEEEeeeccCCceEccCcCCCceEcCCCC-------------EEEEEEEcCCCceEEEEEECCCCc
Confidence 11 111 35665555 789999998 444 444 444 57777776543
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.69 E-value=2.2e-15 Score=143.77 Aligned_cols=251 Identities=10% Similarity=0.001 Sum_probs=160.9
Q ss_pred cccccccCcccEEE-----EEEeCCCCEEEEEeC-CC--eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEe
Q 012007 153 EFSGFKSNSGLVKA-----IIISGDSNKIFTGHQ-DG--KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224 (473)
Q Consensus 153 ~~~~~~~h~~~V~~-----l~~s~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (473)
.+..+..|...... .+|+|||++|+.++. +| .|.+||+.+++......
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~------------------------ 77 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE------------------------ 77 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC------------------------
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee------------------------
Confidence 34455556555555 789999999998887 66 48888988775432211
Q ss_pred ecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEE--EcCCC-EEEE--------
Q 012007 225 RNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV--AGFDS-LVFT-------- 293 (473)
Q Consensus 225 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~--~~~~~-~l~s-------- 293 (473)
++...+..+.|+|+++.|+.++.++.|++||+.+++....+..+...+.... +++++ +++.
T Consensus 78 --------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 149 (388)
T 3pe7_A 78 --------GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDW 149 (388)
T ss_dssp --------SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred --------CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccc
Confidence 1334444678999999999999999999999999988777766666554443 37777 4432
Q ss_pred --------------EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCC------CcEEEEe
Q 012007 294 --------------GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSD------GLVNFWE 352 (473)
Q Consensus 294 --------------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d------g~i~iwd 352 (473)
...+..|.+||+..+. ...+..+...+..++|+| +++.|+....+ ..|.++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d 222 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLIN 222 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEE
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCc-------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEe
Confidence 1234678999987432 223334566789999999 99988776553 3788888
Q ss_pred cCCcccccceeecCc-ceE--EEEEecCCEEEEEeC-CC----cEEEEecCCCCceeEEEEecCCCCc---eeEEEEecC
Q 012007 353 CEKHLSHGGVLRGHK-MAV--LCLAAAGNLVFSGSA-DR----NICLWRREESGAHSCLAVLTGHTGP---VKCLAVEED 421 (473)
Q Consensus 353 ~~~~~~~~~~~~~~~-~~v--~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~h~~~---V~~l~~~~~ 421 (473)
....... .....+. ..+ ..++++|+.|+..+. ++ .|++||+.++. ...+..+.++... ...++|+|+
T Consensus 223 ~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~~~~~~~spd 300 (388)
T 3pe7_A 223 EDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE-NRQLTSMPACSHLMSNYDGSLMVGD 300 (388)
T ss_dssp TTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC-EEEEEEECCEEEEEECTTSSEEEEE
T ss_pred CCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc-eEEEEcCCCceeeeecCCCCeEccC
Confidence 7653221 2222221 123 467788987755443 22 39999998843 2344444442111 223479999
Q ss_pred CCCCcccccCCCccEEEEEe--------eCCCcEEEEEcCCCC
Q 012007 422 RDHDHEYHQKGDQRWTVYSG--------SLDKSVKVWRVSEHA 456 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~s~--------s~Dg~v~iW~i~~~~ 456 (473)
++. ++++. ..+..|++|++..++
T Consensus 301 g~~------------l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 301 GSD------------APVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp ECC------------C------------CCCCEEEEEETTTTE
T ss_pred CCc------------ceeEeeeccccccCCCCEEEEEeccCCc
Confidence 883 23222 556789999998754
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.68 E-value=2e-14 Score=135.61 Aligned_cols=267 Identities=12% Similarity=0.071 Sum_probs=172.4
Q ss_pred eeeeeeecccEEEEEecCCEEEEee----------CCCcEEEeeCC--cccccccc------CcccEEEEEEeCCCCEEE
Q 012007 116 IGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNL--KEFSGFKS------NSGLVKAIIISGDSNKIF 177 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~g~~l~tg~----------~dg~i~vwd~~--~~~~~~~~------h~~~V~~l~~s~~~~~l~ 177 (473)
+..+..+.++-..++++|++|+++. .++.|.+||.. +.+..+.. +......++|+|||++|+
T Consensus 44 ~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 44 LGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp EEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred EEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 4455444444456778899999886 36789999965 33333322 224567899999999999
Q ss_pred EEeC--CCeEEEEeCCCCCeeeE-EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEE
Q 012007 178 TGHQ--DGKIRIWKVSRKNASVH-KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSG 253 (473)
Q Consensus 178 s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~ 253 (473)
++.. ++.|.+||+.+++.... .. +. ....+.+.|++ ..+++.
T Consensus 124 v~n~~~~~~v~v~d~~~~~~~~~~i~---------------------------------~~-~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDYVEDVTA---------------------------------AA-GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEGG---------------------------------GT-TEEEEEECTTSSSEEEEE
T ss_pred EECCCCCCeEEEEECCCCcEEEEEec---------------------------------CC-CcceeEEcCCCCeeEEEE
Confidence 8874 57999999998754322 11 11 12224566754 677888
Q ss_pred eCCCCEEEEEcCC-CeeeEE------eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeec---c
Q 012007 254 SWDKTLKVWRISD-CKCLES------INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLL---K 322 (473)
Q Consensus 254 s~dg~v~vwd~~~-~~~~~~------~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~ 322 (473)
+.||.+.+|++.. ++.... +.....++ .+...+++ .++..+.++.|.++|+...... ......... .
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~-~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVK-VDGPWSLLNDEDK 247 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCE-EEEEEESCCHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCce-ecccccccCcccc
Confidence 8999999999865 554422 12222222 11223333 5566678899999998632210 000000000 0
Q ss_pred C----CccEEEEEEccCCCEEEEeCC-----------CCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCC
Q 012007 323 H----ENAVTALAVNQESAVVYCGSS-----------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADR 387 (473)
Q Consensus 323 ~----~~~v~~l~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 387 (473)
+ ......++|+|+++.++++.. .+.|.+||+.+.+.......+. ..-..++++|++|++++. +
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-S
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-C
Confidence 0 011123789999888777543 3489999999876554444444 566778899999999887 9
Q ss_pred cEEEEecCCCCce--eEEEEecCCCCceeEEEEecCCC
Q 012007 388 NICLWRREESGAH--SCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 388 ~i~iwd~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.|.+||..+ . +.+..+..+......++++|++.
T Consensus 326 ~v~v~D~~t---~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 326 NVNVYDISQ---PEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEECSS---SSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eEEEEECCC---CcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999998 5 77788766777789999999875
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.67 E-value=4.3e-14 Score=145.86 Aligned_cols=282 Identities=11% Similarity=0.039 Sum_probs=177.0
Q ss_pred EEEEEecCCEEEEeeCCC-----cEEEeeCC-cccc------c-cccCcccEEEEEEeCCCCEEEEEeCCC-----eEEE
Q 012007 126 IYSLAASGDLLYTGSDSK-----NIRVWKNL-KEFS------G-FKSNSGLVKAIIISGDSNKIFTGHQDG-----KIRI 187 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg-----~i~vwd~~-~~~~------~-~~~h~~~V~~l~~s~~~~~l~s~~~dg-----~i~v 187 (473)
+.+..++|++++....++ .|.+.+.. .... . -.+|...+..++|+|||++|+.+..++ .|++
T Consensus 76 ~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v 155 (710)
T 2xdw_A 76 YSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKF 155 (710)
T ss_dssp ECCCEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEE
T ss_pred CCCCEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 334458888776554322 23333332 1111 1 123445789999999999998776543 8999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCC---------
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT--------- 258 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~--------- 258 (473)
||+.+++...... ....+..++|+|||+.|+.++.++.
T Consensus 156 ~d~~tg~~~~~~~---------------------------------~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 156 MKVDGAKELPDVL---------------------------------ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp EETTTTEEEEEEE---------------------------------EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred EECCCCCCCcccc---------------------------------cCcccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 9999886543211 1112667999999999999988776
Q ss_pred -------EEEEEcCCCee----eEEeecCCCceeEEEEcCCC-EEEEEeC-----CCcEEEEeCcccCCCc-ceeeeeee
Q 012007 259 -------LKVWRISDCKC----LESINAHDDAINSVVAGFDS-LVFTGSA-----DGTVKVWRRELQGKGT-KHCLAQVL 320 (473)
Q Consensus 259 -------v~vwd~~~~~~----~~~~~~~~~~v~~l~~~~~~-~l~s~~~-----dg~i~vwd~~~~~~~~-~~~~~~~~ 320 (473)
|++|++.+++. +.....+...+..+.|+|++ +|+.++. +..|.+||+....... .......+
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence 99999987752 22223345567889999998 5555443 5689999986410000 00012333
Q ss_pred ccCCccEEEEEEccCCCEEEEeCCC----CcEEEEecCCccc-ccceeecCcc--eEEEEEe--cCCEEEEEeCCCc--E
Q 012007 321 LKHENAVTALAVNQESAVVYCGSSD----GLVNFWECEKHLS-HGGVLRGHKM--AVLCLAA--AGNLVFSGSADRN--I 389 (473)
Q Consensus 321 ~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~-~~~~~~~~~~--~v~~~~~--~~~~l~s~~~dg~--i 389 (473)
..+...+.. .|+++|..|+..+.. +.|.+||+.+... ....+..|.. .+..+.+ ++.++++...|+. |
T Consensus 283 ~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l 361 (710)
T 2xdw_A 283 IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361 (710)
T ss_dssp ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEE
Confidence 444555544 478888877665543 3699999876532 1123334433 4544444 4567778888885 5
Q ss_pred EEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee---CCCcEEEEEcCCCC
Q 012007 390 CLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS---LDKSVKVWRVSEHA 456 (473)
Q Consensus 390 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s---~Dg~v~iW~i~~~~ 456 (473)
.+|++.+ ...+..+..+.+.|..++++|++.. ++++.+ ..++|.+||+.+++
T Consensus 362 ~~~~~~~---g~~~~~l~~~~~~v~~~~~s~d~~~------------l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 362 QLHDLAT---GALLKIFPLEVGSVVGYSGQKKDTE------------IFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTT---CCEEEEECCCSSEEEEEECCTTCSE------------EEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCC---CCEEEecCCCCceEEEEecCCCCCE------------EEEEEeCCCCCCEEEEEECCCCc
Confidence 5566645 2455666777788999999998762 343333 45789999998765
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=1.5e-12 Score=119.01 Aligned_cols=275 Identities=9% Similarity=0.030 Sum_probs=180.1
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeCCccccccc--cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKEFSGFK--SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
...+.++..+ |++.++...++.|.+||....+..+. .+...+.++++.++|+++++...++.|..|+.. +.. ..
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~ 91 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KE 91 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EE
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EE
Confidence 4556677654 77666666678999998764443332 245679999999999888877778899999976 221 11
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE-eecCC
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-INAHD 277 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~~~ 277 (473)
.... .....+..+++.+++.++++...++.|.+||. +++.... .....
T Consensus 92 ~~~~------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~ 140 (299)
T 2z2n_A 92 YTLP------------------------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKG 140 (299)
T ss_dssp EECS------------------------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred EeCC------------------------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCC
Confidence 1100 13456788999999988887777889999998 5544332 23345
Q ss_pred CceeEEEEcCCCEEEE-EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc
Q 012007 278 DAINSVVAGFDSLVFT-GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 278 ~~v~~l~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 356 (473)
..+..+++.+++.++. ...++.|..||. .+. .. ..........+..+++++++.++++...++.|.+||. ++
T Consensus 141 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~----~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g 213 (299)
T 2z2n_A 141 SYPSFITLGSDNALWFTENQNNAIGRITE-SGD----IT-EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG 213 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECT-TCC----EE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc----EE-EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CC
Confidence 6788999998885444 445788999987 221 11 1112234456889999999998877777889999998 43
Q ss_pred ccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCc
Q 012007 357 LSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQ 434 (473)
Q Consensus 357 ~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~ 434 (473)
.........+...+.++. ++|+++++...++.|.+||... ......+..+...+.++++ +++.
T Consensus 214 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~i~~-~~g~----------- 278 (299)
T 2z2n_A 214 EITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNN---IIEEYPIQIKSAEPHGICF-DGET----------- 278 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTT---EEEEEECSSSSCCEEEEEE-CSSC-----------
T ss_pred cEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCC---ceEEEeCCCCCCccceEEe-cCCC-----------
Confidence 322111222334455555 4577666665788999999842 1122223445567899999 8776
Q ss_pred cEEEEEeeCCCcEEEEEcCCC
Q 012007 435 RWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 435 ~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
++++.. .+.|..++..+.
T Consensus 279 --l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 279 --IWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp --EEEEET-TTEEEEEEEC--
T ss_pred --EEEEec-CCcEEEEEcCcc
Confidence 555544 566777776554
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=4.5e-14 Score=129.38 Aligned_cols=242 Identities=12% Similarity=0.099 Sum_probs=162.3
Q ss_pred cccccCcccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 155 SGFKSNSGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
..+..+.....+++|+|+++ +++++..++.|..|+..++ . .... .
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~--------------------------------~ 66 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEM--------------------------------H 66 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEE--------------------------------S
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEE--------------------------------C
Confidence 34445566788999999998 7788888999999999876 2 1111 1
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecC----CCceeEEEEcCCCEEEE-----EeC--------
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH----DDAINSVVAGFDSLVFT-----GSA-------- 296 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~l~s-----~~~-------- 296 (473)
+...+.+++++++++++++...++.|.+||..+++........ ...+..+++.+++.++. |+.
T Consensus 67 ~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~ 146 (296)
T 3e5z_A 67 PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG 146 (296)
T ss_dssp SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence 4567889999999998777777789999999887754433221 23467899999985444 321
Q ss_pred -----CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC-Cccc-c-cceeecCcc
Q 012007 297 -----DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE-KHLS-H-GGVLRGHKM 368 (473)
Q Consensus 297 -----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~-~~~~-~-~~~~~~~~~ 368 (473)
.+.|..++.. +. ......+......++|+|+++.|++.+.++.|.+||+. .+.. . ...+..+..
T Consensus 147 ~~~~~~~~l~~~~~~--g~------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 218 (296)
T 3e5z_A 147 EMELPGRWVFRLAPD--GT------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG 218 (296)
T ss_dssp CCCSSSCEEEEECTT--SC------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS
T ss_pred cccCCCcEEEEECCC--CC------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC
Confidence 2345555543 11 12234455677899999999988888888999999986 2221 0 112211222
Q ss_pred e--EEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe-cCCCCCcccccCCCccEEEEEeeCCC
Q 012007 369 A--VLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE-EDRDHDHEYHQKGDQRWTVYSGSLDK 445 (473)
Q Consensus 369 ~--v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~~~~~~~~~~~~~l~s~s~Dg 445 (473)
. -++++++|+++++. ++.|.+|+... +.+..+..+.. +++++|. +++. .|+.++.+
T Consensus 219 ~p~~i~~d~~G~l~v~~--~~~v~~~~~~g----~~~~~~~~~~~-~~~~~f~~~d~~-------------~L~v~t~~- 277 (296)
T 3e5z_A 219 KTDGLRVDAGGLIWASA--GDGVHVLTPDG----DELGRVLTPQT-TSNLCFGGPEGR-------------TLYMTVST- 277 (296)
T ss_dssp CCCSEEEBTTSCEEEEE--TTEEEEECTTS----CEEEEEECSSC-CCEEEEESTTSC-------------EEEEEETT-
T ss_pred CCCeEEECCCCCEEEEc--CCeEEEECCCC----CEEEEEECCCC-ceeEEEECCCCC-------------EEEEEcCC-
Confidence 2 24556678866665 78899999864 45666666666 9999994 7776 67777766
Q ss_pred cEEEEEcCCCCCCccC
Q 012007 446 SVKVWRVSEHAPDLKG 461 (473)
Q Consensus 446 ~v~iW~i~~~~~~~~~ 461 (473)
.+|.+......++.
T Consensus 278 --~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 278 --EFWSIETNVRGLEH 291 (296)
T ss_dssp --EEEEEECSCCBCCC
T ss_pred --eEEEEEcccccccc
Confidence 36666555544444
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=1.4e-13 Score=136.50 Aligned_cols=275 Identities=9% Similarity=0.065 Sum_probs=188.1
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCc--cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC--CCCeeeEEeeccc
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS--RKNASVHKRVGSL 204 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~ 204 (473)
..+.+.++++...++.|.++|... .+..+. ....+..+.|+|||++|++++.|+.|.+||+. +.+......
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---- 237 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---- 237 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence 334456777888899999999763 343443 23456799999999999999999999999995 554433222
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEc----CCCCEEEEEeC-CCCEEEEEcCCCeeeEEeecC---
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN----AEQGLLYSGSW-DKTLKVWRISDCKCLESINAH--- 276 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~--- 276 (473)
.......++|+ |+|++++++.+ +++|.++|..+.+.+..+...
T Consensus 238 -----------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~ 288 (567)
T 1qks_A 238 -----------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 288 (567)
T ss_dssp -----------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC
T ss_pred -----------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc
Confidence 22235689999 69999888765 589999999999988877532
Q ss_pred --------CCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CC
Q 012007 277 --------DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SD 345 (473)
Q Consensus 277 --------~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d 345 (473)
...+..+..++++ +++....+|.|.++|..... .+.............+.|+|++++++++. .+
T Consensus 289 ~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~-----~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~s 363 (567)
T 1qks_A 289 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN-----NLKTTEISAERFLHDGGLDGSHRYFITAANAR 363 (567)
T ss_dssp TTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS-----EEEEEEEECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred cccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc-----cceeeeeeccccccCceECCCCCEEEEEeCCC
Confidence 1256778888775 66677778999999986321 11112223344577889999999877654 57
Q ss_pred CcEEEEecCCcccccceee----cCcc-eEEEEEecCC-EEEEEe-CCCcEEEEecCCCC----ceeEEEEecCCCCcee
Q 012007 346 GLVNFWECEKHLSHGGVLR----GHKM-AVLCLAAAGN-LVFSGS-ADRNICLWRREESG----AHSCLAVLTGHTGPVK 414 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~----~~~~-~v~~~~~~~~-~l~s~~-~dg~i~iwd~~~~~----~~~~~~~~~~h~~~V~ 414 (473)
+.|.++|+.+.+....... .|.. .+.-+.+++. +++++. .++.|.++|....+ .++.++.+......-.
T Consensus 364 n~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~ 443 (567)
T 1qks_A 364 NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSL 443 (567)
T ss_dssp TEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC
T ss_pred CeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCE
Confidence 8999999998654332222 2432 2222466644 444443 46899999988632 1556677665433335
Q ss_pred EEEEecCCCCCcccccCCCccEEEEEeeC-------CCcEEEEEcCCC
Q 012007 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL-------DKSVKVWRVSEH 455 (473)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~~l~s~s~-------Dg~v~iW~i~~~ 455 (473)
.+..+|+++ .|+.... ..+|.|+|+.+.
T Consensus 444 ~i~~~p~~~-------------~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 444 FIKTHPNSQ-------------YLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CEECCTTCS-------------EEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEeCCCCC-------------eEEEecCCCCCcccCceEEEEECCcc
Confidence 578899988 4554331 359999999877
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.65 E-value=2.2e-14 Score=147.62 Aligned_cols=278 Identities=11% Similarity=0.034 Sum_probs=175.0
Q ss_pred cEEEEEecCCEEEEeeCCC---cEEEe--eCC-cccccc-------ccCcccEEEEEEeCCCCEEE-----EEeCCCeEE
Q 012007 125 HIYSLAASGDLLYTGSDSK---NIRVW--KNL-KEFSGF-------KSNSGLVKAIIISGDSNKIF-----TGHQDGKIR 186 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg---~i~vw--d~~-~~~~~~-------~~h~~~V~~l~~s~~~~~l~-----s~~~dg~i~ 186 (473)
.+....++|++++....++ .-.|| +.. .....+ .+|...+..++|||||++|| .|+.+..|+
T Consensus 71 ~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~ 150 (695)
T 2bkl_A 71 SVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLH 150 (695)
T ss_dssp EECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEE
T ss_pred cCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEE
Confidence 3444558888877766544 34455 322 111111 24566799999999999998 344456899
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCC--------
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT-------- 258 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~-------- 258 (473)
+||+.+++....... .......++|+|||+.|+.++.|..
T Consensus 151 v~dl~tg~~~~~~~~--------------------------------~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 151 VIDVDSGEWSKVDVI--------------------------------EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEETTTCCBCSSCCB--------------------------------SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEECCCCCCcCCccc--------------------------------CcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 999998864310000 1111257899999999999998876
Q ss_pred -----EEEEEcCCCe----eeEEeecCCCceeEEEEcCCC-EEEEEeCCC----cEEEEeCcccCCCcceeeeeeeccCC
Q 012007 259 -----LKVWRISDCK----CLESINAHDDAINSVVAGFDS-LVFTGSADG----TVKVWRRELQGKGTKHCLAQVLLKHE 324 (473)
Q Consensus 259 -----v~vwd~~~~~----~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~ 324 (473)
|++|++.+++ .+.....+...+..+.++|++ +|+.++.++ .|.+|+...+ ....+..+.
T Consensus 199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-------~~~~l~~~~ 271 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-------DFRLLVKGV 271 (695)
T ss_dssp GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-------SCEEEEECS
T ss_pred CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-------ceEEeecCC
Confidence 9999998775 333444455678899999998 555555544 5666654211 122333444
Q ss_pred ccEEEEEEccCCCEEEEeC---CCCcEEEEecCCccc--ccceeecC-cceEEEEEe-cCCEEEEEeCCCcEEEEecCCC
Q 012007 325 NAVTALAVNQESAVVYCGS---SDGLVNFWECEKHLS--HGGVLRGH-KMAVLCLAA-AGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 325 ~~v~~l~~~~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~-~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
..+....+ +++.+++.+. .++.|.+||+.++.. .......+ ...+..+++ ++.++++...|+..+||.+...
T Consensus 272 ~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 272 GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC
Confidence 55566666 5555555544 257899999976532 12233333 334555554 4667788888999888876531
Q ss_pred CceeEEEEecCC-CCceeEEEEecCCCCCcccccCCCccEEEEEe---eCCCcEEEEEcCCCC
Q 012007 398 GAHSCLAVLTGH-TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG---SLDKSVKVWRVSEHA 456 (473)
Q Consensus 398 ~~~~~~~~~~~h-~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~---s~Dg~v~iW~i~~~~ 456 (473)
...+..+..+ .+.|..+++++++.. ++++. ..+++|++||+.+++
T Consensus 351 --g~~~~~l~~~~~~~v~~~~~s~d~~~------------l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 351 --GKPVRTVQLPGVGAASNLMGLEDLDD------------AYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp --CCEEEECCCSSSSEECCCBSCTTCSE------------EEEEEEETTEEEEEEEEETTTCC
T ss_pred --CCeeEEecCCCCeEEEEeecCCCCCE------------EEEEEcCCCCCCEEEEEECCCCc
Confidence 2344555554 667888899998762 33333 345789999998765
No 182
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=7.1e-14 Score=126.12 Aligned_cols=237 Identities=9% Similarity=0.033 Sum_probs=157.4
Q ss_pred cEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 163 LVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
...+++++++|++++ +...++.|.+|+..+....... ..+...+.++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~--------------------------------~~~~~~p~~i 72 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP--------------------------------FNGLYQPQGL 72 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC--------------------------------CCSCCSCCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe--------------------------------eCCcCCccee
Confidence 678999999998666 4467889999987554321100 0133467789
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
+++++++++++.. ++.|.+||....... .+. .....+..+++.+++ ++++...++.|.+|+..... . ...
T Consensus 73 ~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-----~-~~~ 144 (270)
T 1rwi_B 73 AVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-----Q-TVL 144 (270)
T ss_dssp EECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-----C-EEC
T ss_pred EECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-----e-Eee
Confidence 9999988555555 889999998765433 232 233578899999888 44455667899999754211 1 111
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCC
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
.......+..++++++++++++...++.|.+||.......... ..+......+ .++|.++++...++.|.+|+....
T Consensus 145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 1222345788999999998877777889999998764332111 1222334444 455777777777889999998762
Q ss_pred CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 398 GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 398 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
........+...+.++++++++. ++++...++.|+++++...+
T Consensus 224 ---~~~~~~~~~~~~p~~i~~~~~g~-------------l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 224 ---TSTVLPFTGLNTPLAVAVDSDRT-------------VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ---CCEECCCCSCSCEEEEEECTTCC-------------EEEEEGGGTEEEEECCCGGG
T ss_pred ---cceeeccCCCCCceeEEECCCCC-------------EEEEECCCCEEEEEcCCCcc
Confidence 22222223335689999999987 88888899999999987654
No 183
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.61 E-value=2.7e-13 Score=126.20 Aligned_cols=243 Identities=10% Similarity=0.075 Sum_probs=160.0
Q ss_pred ccEEEEE--ecCCEEEEeeCC------------------------CcEEEeeCC-cc-ccccc-cCcccEEEEEEeCCCC
Q 012007 124 GHIYSLA--ASGDLLYTGSDS------------------------KNIRVWKNL-KE-FSGFK-SNSGLVKAIIISGDSN 174 (473)
Q Consensus 124 ~~V~~~~--~~g~~l~tg~~d------------------------g~i~vwd~~-~~-~~~~~-~h~~~V~~l~~s~~~~ 174 (473)
+.+.+++ ++|+++++...+ +.|.+||.. .. +..+. ++-.....|+++++|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 3455555 458888888777 479999864 22 22222 3445789999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCC-eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEE
Q 012007 175 KIFTGHQDGKIRIWKVSRKN-ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYS 252 (473)
Q Consensus 175 ~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s 252 (473)
++++...++.|++|+..... ..........+.. ..++......|+++| ++.++++
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~-----------------------~~~~~~~P~~ia~~~~~g~lyv~ 160 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS-----------------------DQNHFCQPTDVAVEPSTGAVFVS 160 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCC-----------------------STTCCSSEEEEEECTTTCCEEEE
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCC-----------------------CccccCCCcEEEEeCCCCeEEEE
Confidence 88888889999999986542 1111110000000 001445688999999 7887777
Q ss_pred Ee-CCCCEEEEEcCCCeeeEEeecC----------CCceeEEEEcCC-C-EEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 253 GS-WDKTLKVWRISDCKCLESINAH----------DDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 253 ~s-~dg~v~vwd~~~~~~~~~~~~~----------~~~v~~l~~~~~-~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
.+ .++.|++|| .+++.+..+... -.....+++.++ + ++++...++.|++||...+. ....
T Consensus 161 d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~------~~~~ 233 (329)
T 3fvz_A 161 DGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE------FVRE 233 (329)
T ss_dssp ECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC------EEEE
T ss_pred eCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc------EEEE
Confidence 76 689999999 577777766422 234789999988 6 55666778899999986322 1222
Q ss_pred e--ccCCccEEEEEEcc------CCCEEEEeCCCCcEEEEecCCccccccee--ecCcceE--EEEEecCCEEEEEeCCC
Q 012007 320 L--LKHENAVTALAVNQ------ESAVVYCGSSDGLVNFWECEKHLSHGGVL--RGHKMAV--LCLAAAGNLVFSGSADR 387 (473)
Q Consensus 320 ~--~~~~~~v~~l~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v--~~~~~~~~~l~s~~~dg 387 (473)
+ ..+...+..++++| +++.+++...+..|++||..++......- .++.... .+++++|.++++...++
T Consensus 234 ~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~ 313 (329)
T 3fvz_A 234 IKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN 313 (329)
T ss_dssp ECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC
T ss_pred EeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC
Confidence 2 34566788999999 33333333445689999988765432211 2333334 44556787888888899
Q ss_pred cEEEEecCC
Q 012007 388 NICLWRREE 396 (473)
Q Consensus 388 ~i~iwd~~~ 396 (473)
.|++|++..
T Consensus 314 ~I~~~~~~~ 322 (329)
T 3fvz_A 314 TVWKFTLTE 322 (329)
T ss_dssp CEEEEEEEE
T ss_pred EEEEEeCCc
Confidence 999999865
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.61 E-value=2.5e-13 Score=124.46 Aligned_cols=244 Identities=8% Similarity=0.040 Sum_probs=159.1
Q ss_pred eeeeeeecccEEEEE--ecCC-EEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 116 IGSIVRKEGHIYSLA--ASGD-LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~--~~g~-~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
+..+..+.....++. ++|+ +++++..++.|.+|+.......+..+...+.+++++++|+++++...++.|.+||..+
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 344444444444444 5577 7888888999999997755666667778899999999999887777778999999977
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE----e-------------C
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG----S-------------W 255 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~----s-------------~ 255 (473)
++.......... .....+..++++++|+++++. + .
T Consensus 100 g~~~~~~~~~~~----------------------------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~ 151 (296)
T 3e5z_A 100 GEWESIADSFEG----------------------------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP 151 (296)
T ss_dssp CCEEEEECEETT----------------------------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred CcEEEEeeccCC----------------------------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence 764322110000 023456789999999988873 2 1
Q ss_pred CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc
Q 012007 256 DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 256 dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
.+.|..++.. ++ +..+..+......+++++++ .+++.+.++.|.+|++...+. .......+..+...+..+++++
T Consensus 152 ~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~p~~i~~d~ 227 (296)
T 3e5z_A 152 GRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE--TEYQGVHFTVEPGKTDGLRVDA 227 (296)
T ss_dssp SCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC--EEEEEEEECCSSSCCCSEEEBT
T ss_pred CcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc--CcCCCeEeeCCCCCCCeEEECC
Confidence 2345555544 33 44455566778899999998 557777789999999862221 1000111123455677899999
Q ss_pred CCCEEEEeCCCCcEEEEecCCcccccceeecCcc-eEEEEE-ecCCEEEEEeCCCcEEEEecCC
Q 012007 335 ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM-AVLCLA-AAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 335 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~-~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+|+++++. ++.|.+||... ... ..+..+.. ...++. ++++.|++++.++ +.-++..+
T Consensus 228 ~G~l~v~~--~~~v~~~~~~g-~~~-~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 228 GGLIWASA--GDGVHVLTPDG-DEL-GRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp TSCEEEEE--TTEEEEECTTS-CEE-EEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred CCCEEEEc--CCeEEEECCCC-CEE-EEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 99977666 78999999874 222 23333333 223342 4677888888763 55555555
No 185
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.59 E-value=4.1e-13 Score=121.28 Aligned_cols=213 Identities=11% Similarity=-0.013 Sum_probs=145.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
.+++|++++.|+.|.+||.++++........ ....+.++.+.|+|++|+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~-------------------------------~~~~~~~~~~~pdG~ilv 52 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLE-------------------------------KGWECNSVAATKAGEILF 52 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECC-------------------------------TTCCCCEEEECTTSCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCC-------------------------------ccCCCcCeEECCCCCEEE
Confidence 4578999999999999999888876554421 113578899999999888
Q ss_pred EEeCCCCEEEEEcCCCeeeEEeecCC-CceeEEEEcCCC-EEEEEeC-CCcEEEEeCcccCCCcceeeeeeeccCCccEE
Q 012007 252 SGSWDKTLKVWRISDCKCLESINAHD-DAINSVVAGFDS-LVFTGSA-DGTVKVWRRELQGKGTKHCLAQVLLKHENAVT 328 (473)
Q Consensus 252 s~s~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~~~~~-~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 328 (473)
+.++.|..||. +++.+..+..+. ..+.++.+.+++ .+++.+. ++.|..+|.. ++.............+.....
T Consensus 53 --s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~ 128 (276)
T 3no2_A 53 --SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFR 128 (276)
T ss_dssp --ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCS
T ss_pred --eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccccccc
Confidence 45788999998 899999998753 468888888888 5666565 6777777653 111000000001111223445
Q ss_pred EEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 329 ALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 329 ~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
.+++.++|+++++...++.|..||.+ ++..-..............++|++++++..++.|..+|..++ +.+..+..
T Consensus 129 ~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~ 204 (276)
T 3no2_A 129 QINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNA 204 (276)
T ss_dssp CCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEG
T ss_pred CceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecC
Confidence 66789999999999999999999987 544332222212222344567999999998889999999873 44555432
Q ss_pred C------CCceeEEEEecCCC
Q 012007 409 H------TGPVKCLAVEEDRD 423 (473)
Q Consensus 409 h------~~~V~~l~~~~~~~ 423 (473)
+ ...+..++..+++.
T Consensus 205 ~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 205 NDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp GGSBSCCCSEEEEEEECTTSC
T ss_pred CCCCCccccccccceEcCCCC
Confidence 2 12377888888887
No 186
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.59 E-value=3.2e-13 Score=139.91 Aligned_cols=279 Identities=12% Similarity=0.018 Sum_probs=173.2
Q ss_pred cEEEEEecCCEEEEeeCCCc---EEEe--eCC----cccccc-------ccCcccEEEEEEeCCCCEEEEEeCC-----C
Q 012007 125 HIYSLAASGDLLYTGSDSKN---IRVW--KNL----KEFSGF-------KSNSGLVKAIIISGDSNKIFTGHQD-----G 183 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~---i~vw--d~~----~~~~~~-------~~h~~~V~~l~~s~~~~~l~s~~~d-----g 183 (473)
.+....++|++++....++. -.+| +.. .....+ .+|...+..++|+|||++|+.+..+ .
T Consensus 110 ~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~ 189 (741)
T 1yr2_A 110 RFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWR 189 (741)
T ss_dssp EECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEE
T ss_pred ccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceE
Confidence 34445588998776655443 5556 332 122221 2234478899999999999877654 3
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCC-----
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT----- 258 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~----- 258 (473)
.|++||+.+++...... +...+..++|+|| +.|+.++.++.
T Consensus 190 ~i~v~dl~tg~~~~~~~---------------------------------~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 190 TVKFVGVADGKPLADEL---------------------------------KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp EEEEEETTTCCEEEEEE---------------------------------EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred EEEEEECCCCCCCCccC---------------------------------CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 69999999887532211 1112356889999 98888887654
Q ss_pred ---------EEEEEcCCCe----eeEEeecCCCceeEEEEcCCC-EEEEEeCC-----CcEEEEeCcccCCCcceeeeee
Q 012007 259 ---------LKVWRISDCK----CLESINAHDDAINSVVAGFDS-LVFTGSAD-----GTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 259 ---------v~vwd~~~~~----~~~~~~~~~~~v~~l~~~~~~-~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~ 319 (473)
|++|++.++. .+.....+...+..+.|+|++ +|+..+.+ ..|.+||+..+. ......
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~~~~ 311 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK----IGPVTA 311 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE----ECCCEE
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC----CcccEE
Confidence 8999997765 222222333458899999998 56655543 389999986321 010122
Q ss_pred eccCCccEEEEEEccCCCEEEEeCC----CCcEEEEecCCcc-cccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEe
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSS----DGLVNFWECEKHL-SHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWR 393 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd 393 (473)
+..+...+.... +|+++.|+..+. ++.|.+||+.+.. ........+...+..+++. +.++++...|+..+||.
T Consensus 312 l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 312 LIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp EECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEE
T ss_pred ecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEE
Confidence 333444444443 488888777665 3459999987642 2333444444455556655 55677888899888876
Q ss_pred cCCCCceeEEEEecC-CCCceeEEEEecCCCCCcccccCCCccEEEEEe---eCCCcEEEEEcCCCC
Q 012007 394 REESGAHSCLAVLTG-HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG---SLDKSVKVWRVSEHA 456 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~---s~Dg~v~iW~i~~~~ 456 (473)
+... ......+.. +.+.|..+.++|++.. ++++. ...++|++||+.+++
T Consensus 391 ~~~~--g~~~~~l~~~~~~~v~~~~~s~d~~~------------l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 391 FDLD--GKPAGAVSLPGIGSASGLSGRPGDRH------------AYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETT--SCEEEECBCSSSCEEEEEECCBTCSC------------EEEEEEETTEEEEEEEEETTTTE
T ss_pred EeCC--CCceeeccCCCCeEEEEeecCCCCCE------------EEEEEcCCCCCCEEEEEECCCCc
Confidence 6521 234444544 3667899999998763 33333 345789999997754
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.59 E-value=7.3e-13 Score=123.18 Aligned_cols=257 Identities=9% Similarity=0.059 Sum_probs=168.5
Q ss_pred CCCcEEEeeCCcc-c-ccc-c-----cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 141 DSKNIRVWKNLKE-F-SGF-K-----SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 141 ~dg~i~vwd~~~~-~-~~~-~-----~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
.++.|.+||.... + ..+ . ........+++.. ++..++...++.|.+||..+++......
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~------------ 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT------------ 81 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC------------
Confidence 3789999996522 1 111 0 1223467788753 4445555567999999999887644332
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCC-----CceeEEEEc
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHD-----DAINSVVAG 286 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~-----~~v~~l~~~ 286 (473)
.......+++++++ .++++. .++.|.+||..+++....+.... .....+++
T Consensus 82 ---------------------~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 82 ---------------------GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp ---------------------CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-
T ss_pred ---------------------CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-
Confidence 33557789998888 555555 88999999999999887776433 14556666
Q ss_pred CCCEEEEEe--CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC----------CcEEEEecC
Q 012007 287 FDSLVFTGS--ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD----------GLVNFWECE 354 (473)
Q Consensus 287 ~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----------g~i~iwd~~ 354 (473)
.++.++++. .++.|.++|+.... ....+.. ......++++++|++++++..+ +.|.++|..
T Consensus 139 ~~~~lyv~~~~~~~~v~viD~~t~~------~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 139 YGKYVYVNCWSYQNRILKIDTETDK------VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp ETTEEEEEECTTCCEEEEEETTTTE------EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred ECCEEEEEcCCCCCEEEEEECCCCe------EEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 455555554 48999999987432 1122221 2345678999999977777655 789999998
Q ss_pred Ccccccceee--cCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCC
Q 012007 355 KHLSHGGVLR--GHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKG 432 (473)
Q Consensus 355 ~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~ 432 (473)
+......... +....-+++++++++|+++.. .|.+||..++... ....+........+++++|++..
T Consensus 212 t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~-~~~~~~~~~~~p~gi~vdp~~g~-------- 280 (328)
T 3dsm_A 212 TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP-VRPFLEFRDTKYYGLTVNPNNGE-------- 280 (328)
T ss_dssp TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC-SSCSBCCCSSCEEEEEECTTTCC--------
T ss_pred CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee-eeeeecCCCCceEEEEEcCCCCe--------
Confidence 7544322222 223344667777888888765 8999999874321 11112222456889999995542
Q ss_pred CccEEEEEe----eCCCcEEEEEcCCCC
Q 012007 433 DQRWTVYSG----SLDKSVKVWRVSEHA 456 (473)
Q Consensus 433 ~~~~~l~s~----s~Dg~v~iW~i~~~~ 456 (473)
++++. ..++.|.+|+.. ++
T Consensus 281 ----lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 281 ----VYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp ----EEEEECTTSSSEEEEEEECTT-CC
T ss_pred ----EEEEcccccccCCEEEEECCC-CC
Confidence 66666 678999999987 54
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.58 E-value=1.6e-14 Score=137.92 Aligned_cols=235 Identities=7% Similarity=-0.070 Sum_probs=148.6
Q ss_pred cEEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 163 LVKAIIISGDSNKIFTGHQD---GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
.+..++|+|||++|+..... ..|.+||+.+++...... ++.....
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~--------------------------------~~~~~~~ 84 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE--------------------------------GKGDNTF 84 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC--------------------------------SSCBCTT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec--------------------------------CCCCccc
Confidence 37788999999998877543 468888988765322110 0112223
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeE-------------------EEEcCCC-EEEEE-----
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS-------------------VVAGFDS-LVFTG----- 294 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~-------------------l~~~~~~-~l~s~----- 294 (473)
.+.|+|++++|+.++.++.|++||+.+++.......+...... +.++|++ .++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 4789999999999999999999999988766555544432222 2345554 22222
Q ss_pred eCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCC------CcEEEEecCCcccccceeecC-
Q 012007 295 SADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSD------GLVNFWECEKHLSHGGVLRGH- 366 (473)
Q Consensus 295 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~- 366 (473)
..+..|.+||+..+. ...+..+...+..+.|+| ++..|+..+.+ ..|.+||+...... ......
T Consensus 165 ~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~ 236 (396)
T 3c5m_A 165 NPTCRLIKVDIETGE-------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAE 236 (396)
T ss_dssp CCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCT
T ss_pred CCcceEEEEECCCCc-------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCC
Confidence 356688999986422 112224567789999999 78766655433 46888888654321 122211
Q ss_pred cceE--EEEEecCCEEEEEeCC-----CcEEEEecCCCCceeEEEEecCCCCceeEEEEec-CCCCCcccccCCCccEEE
Q 012007 367 KMAV--LCLAAAGNLVFSGSAD-----RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE-DRDHDHEYHQKGDQRWTV 438 (473)
Q Consensus 367 ~~~v--~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~~~~~~~~~~~~~~l 438 (473)
...+ ..++++|++|+.++.+ +.|++||+.++. ...+..+.+ .. +.|+| +++ ++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~----~~-~~~s~~dg~-------------~l 297 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE-NEEVMVMPP----CS-HLMSNFDGS-------------LM 297 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC-EEEEEECCS----EE-EEEECSSSS-------------EE
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC-eEEeeeCCC----CC-CCccCCCCc-------------eE
Confidence 2223 4677889877766544 449999998743 233333322 23 89999 887 56
Q ss_pred EEee----------------CCCcEEEEEcCCCC
Q 012007 439 YSGS----------------LDKSVKVWRVSEHA 456 (473)
Q Consensus 439 ~s~s----------------~Dg~v~iW~i~~~~ 456 (473)
++++ .++.|++||+..+.
T Consensus 298 ~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 298 VGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred EEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 6544 34789999987664
No 189
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.57 E-value=4.7e-11 Score=109.07 Aligned_cols=271 Identities=8% Similarity=0.066 Sum_probs=176.4
Q ss_pred ccEEEEEe--cCCEEEEeeCCCcEEEeeCCcccccc--ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 124 GHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGF--KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 124 ~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
..+.++.. +|++.++...++.|.+||....+..+ ..+...+.++++.++++++++...++.|..||.. ++.. ..
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee
Confidence 34556665 47777776678899999876333322 2234678999999999877776667899999987 4432 11
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE-EeecCCC
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE-SINAHDD 278 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~ 278 (473)
... .....+.++++.+++.++++...++.|..||.. ++... .+.....
T Consensus 98 ~~~------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~ 146 (300)
T 2qc5_A 98 PLP------------------------------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS 146 (300)
T ss_dssp ECS------------------------------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred cCC------------------------------CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence 110 023567899999999887777668899999987 55442 2333456
Q ss_pred ceeEEEEcCCCEEE-EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc
Q 012007 279 AINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357 (473)
Q Consensus 279 ~v~~l~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 357 (473)
.+..+++.+++.++ +...++.|..||.. +. .. ......+...+..+++++++.++++....+.|.+||... .
T Consensus 147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~----~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~ 219 (300)
T 2qc5_A 147 YPAFITLGSDNALWFTENQNNSIGRITNT-GK----LE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-E 219 (300)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECTT-CC----EE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-C
T ss_pred CceeEEECCCCCEEEEecCCCeEEEECCC-Cc----EE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-c
Confidence 78899998888444 44457889999873 11 11 112223445789999999998887777778899999842 2
Q ss_pred cccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCcc
Q 012007 358 SHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQR 435 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~ 435 (473)
........+...+.++. ++|++.++...++.|..|+... . .. ...+......+.++++.+++.
T Consensus 220 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~-~~-~~~~~~~~~~~~~i~~~~~g~------------ 284 (300)
T 2qc5_A 220 ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDN-T-IQ-EYQLQTENAEPHGITFGKDGS------------ 284 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS-C-EE-EEECCSTTCCCCCEEECTTSC------------
T ss_pred EEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCC-c-EE-EEECCccCCccceeEeCCCCC------------
Confidence 22111222333444554 4577666666678999999843 1 12 222333445689999999987
Q ss_pred EEEEEeeCCCcEEEEEc
Q 012007 436 WTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 436 ~~l~s~s~Dg~v~iW~i 452 (473)
++++.. . .|..++.
T Consensus 285 -l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 285 -VWFALK-C-KIGKLNL 298 (300)
T ss_dssp -EEEECS-S-EEEEEEE
T ss_pred -EEEEcc-C-ceEEeCC
Confidence 555554 4 6666664
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=3.5e-12 Score=118.84 Aligned_cols=238 Identities=13% Similarity=0.027 Sum_probs=150.7
Q ss_pred eeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc-cccccc-cCcccEEEEEEeCCCCEEEEEeCC----CeEEE
Q 012007 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK-EFSGFK-SNSGLVKAIIISGDSNKIFTGHQD----GKIRI 187 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~-~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~d----g~i~v 187 (473)
...+..+...+.++.+ +|++++++..++.|.+||... .+..+. .+...+.+++++++|+++++...+ +.|.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 3445555555666665 478888888899999998653 233322 466789999999999888877666 68999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC------CCCEEE
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW------DKTLKV 261 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~------dg~v~v 261 (473)
||..++......... .+...+.+++++++++++++... .+.|..
T Consensus 117 ~d~~~~~~~~~~~~~------------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~ 166 (333)
T 2dg1_A 117 ATENGDNLQDIIEDL------------------------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY 166 (333)
T ss_dssp ECTTSCSCEEEECSS------------------------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEE
T ss_pred EeCCCCEEEEEEccC------------------------------ccCCcccceEECCCCCEEEEeccccccCCCceEEE
Confidence 998876543111100 13456889999999987776653 245666
Q ss_pred EEcCCCeeeEEeecCCCceeEEEEcCCC-EE-EEEeCCCcEEEEeCcccCCCcce---eeeeeeccCCccEEEEEEccCC
Q 012007 262 WRISDCKCLESINAHDDAINSVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKH---CLAQVLLKHENAVTALAVNQES 336 (473)
Q Consensus 262 wd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~v~~l~~~~~~ 336 (473)
+|..+++... +..+...+..+++++++ .+ ++...++.|.+||+...+..... ........+ ..+..++++++|
T Consensus 167 ~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G 244 (333)
T 2dg1_A 167 VSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD 244 (333)
T ss_dssp ECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC
T ss_pred EeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC
Confidence 6655444433 22233457889999997 45 45556889999998632211100 001111122 467889999999
Q ss_pred CEEEEeCCCCcEEEEecCCcccccceeecCc--------ceEEEEEecCCEEEEEeCCC
Q 012007 337 AVVYCGSSDGLVNFWECEKHLSHGGVLRGHK--------MAVLCLAAAGNLVFSGSADR 387 (473)
Q Consensus 337 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~l~s~~~dg 387 (473)
+++++...++.|.+||... ... ..+..+. ..-.+++++++.|+.++.++
T Consensus 245 ~l~v~~~~~~~v~~~d~~g-~~~-~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 245 NLYVAMYGQGRVLVFNKRG-YPI-GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CEEEEEETTTEEEEECTTS-CEE-EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CEEEEEcCCCEEEEECCCC-CEE-EEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 9888877788999999853 222 2222221 23345556777777666553
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.57 E-value=1.3e-11 Score=116.35 Aligned_cols=265 Identities=7% Similarity=0.004 Sum_probs=166.1
Q ss_pred cEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe----------CCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 144 NIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH----------QDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 144 ~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
.|.+||.. +.+..+.....+ .++++|||++|+.+. .++.|.+||..+.+......+......
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~---- 121 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF---- 121 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc----
Confidence 77888864 333334333333 999999999999886 367899999987765544432200000
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC--CCCEEEEEcCCCeeeEE-eecCCCceeEEEEcCC
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLES-INAHDDAINSVVAGFD 288 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~~~~ 288 (473)
.+......+.|+|+|++|+++.. ++.|.++| .+++.+.. +.... ++.+.++
T Consensus 122 ---------------------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~ 175 (373)
T 2mad_H 122 ---------------------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPG 175 (373)
T ss_pred ---------------------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeC
Confidence 01123457899999999999874 47899999 99998877 65322 2333344
Q ss_pred C--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCcc-EEEEEEccCCCEEEEeCCCCcEEEEecCCcccc-ccee-
Q 012007 289 S--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA-VTALAVNQESAVVYCGSSDGLVNFWECEKHLSH-GGVL- 363 (473)
Q Consensus 289 ~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~- 363 (473)
+ .+++.+.||.+.++|. .+............ ....+ .....+.+++..++..+.++.+.+.|+...... ...+
T Consensus 176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~ 253 (373)
T 2mad_H 176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID 253 (373)
T ss_pred CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeee
Confidence 3 6677788999999998 43321000000001 11122 233456666555444457789999998643211 1111
Q ss_pred -----------ecCcceEEEEEecCCEEEEEeC----------CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 364 -----------RGHKMAVLCLAAAGNLVFSGSA----------DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 364 -----------~~~~~~v~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
.........++++++.++++.. ++.|.++|..+ .+.+..+.. .....+++|+||+
T Consensus 254 ~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t---~~vv~~i~~-g~~p~~i~~s~Dg 329 (373)
T 2mad_H 254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV---GQTSSQISL-GHDVDAISVAQDG 329 (373)
T ss_pred ecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC---CEEEEEEEC-CCCcCeEEECCCC
Confidence 1111223567788887777653 35799999988 456666543 3357999999998
Q ss_pred CCCcccccCCCccEEEEEee-CCCcEEEEEcCCCCCC
Q 012007 423 DHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVSEHAPD 458 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~~~~~ 458 (473)
+. +++++. .++.|.+||+.+++..
T Consensus 330 ~~------------~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 330 GP------------DLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred Ce------------EEEEEcCCCCeEEEEECCCCCEE
Confidence 73 456655 5899999999987654
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.56 E-value=6.7e-13 Score=119.63 Aligned_cols=228 Identities=7% Similarity=0.008 Sum_probs=151.4
Q ss_pred EEecCCEEE-EeeCCCcEEEeeCCcccccc--ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 129 LAASGDLLY-TGSDSKNIRVWKNLKEFSGF--KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 129 ~~~~g~~l~-tg~~dg~i~vwd~~~~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
+.++|++++ +...++.|.+|+........ ..+...+.+|+++++|+++++.. ++.|.+||......... ..
T Consensus 31 ~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~-~~---- 104 (270)
T 1rwi_B 31 VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL-PF---- 104 (270)
T ss_dssp ECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC-CC----
T ss_pred ECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee-ec----
Confidence 345577666 54678899999865332221 22335688999999998666655 88999999876542111 00
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEE
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA 285 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~ 285 (473)
.....+..++++++++++++...++.|.+|+..+.............+.++++
T Consensus 105 ---------------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 105 ---------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp ---------------------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred ---------------------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 12356789999999987777777889999986655443322233346788999
Q ss_pred cCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee
Q 012007 286 GFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR 364 (473)
Q Consensus 286 ~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 364 (473)
.+++ ++++...++.|.+||..... .......+...+..|+++++|.++++...++.|.+||........ ...
T Consensus 158 ~~~g~l~v~~~~~~~i~~~~~~~~~------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DNSGNVYVTDTDNNRVVKLEAESNN------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTTCC------EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC
T ss_pred eCCCCEEEEECCCCEEEEEecCCCc------eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc
Confidence 9887 44455567899999976321 111122233678999999999888888888999999987643221 111
Q ss_pred cCcceE--EEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 365 GHKMAV--LCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 365 ~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.+.... .+++++|+++++...++.|++|++..
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 222334 44456688888888899999999876
No 193
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.55 E-value=1e-12 Score=123.07 Aligned_cols=219 Identities=8% Similarity=0.073 Sum_probs=146.4
Q ss_pred ccEEEEEEeCCCCEEEEEe---------CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 162 GLVKAIIISGDSNKIFTGH---------QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
..+...++ ||++|+... .++.|.+||+.+++....
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---------------------------------- 58 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---------------------------------- 58 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----------------------------------
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----------------------------------
Confidence 45677777 888877642 256799999987653111
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCC-----CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeC----------
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDK-----TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSA---------- 296 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~---------- 296 (473)
..+..++|+|+|++|+.++.++ .|.+||+.+++.......+ . +..+.|+|++ .|+.++.
T Consensus 59 ---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ---ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ---ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC------
T ss_pred ---ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence 3467899999999998887542 3888899888766555443 3 8999999998 5665553
Q ss_pred -----------------CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-------cEEEEe
Q 012007 297 -----------------DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-------LVNFWE 352 (473)
Q Consensus 297 -----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-------~i~iwd 352 (473)
...|.+||+..+. . ...+.. . .+..++|+|+| +++++..++ ...||.
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~-----~-~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~ 204 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEE-----V-IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYI 204 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTE-----E-EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEE
T ss_pred EcccceeecCcccccCccceEEEEECCCCe-----E-EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEE
Confidence 2568888886321 1 011122 2 67889999999 777775542 344444
Q ss_pred cCCcccccceeecCcceEEEEEecCCEEEEEeCC--------CcEEEEecCCCCceeEEEEecCCCCceeE-EEEecCCC
Q 012007 353 CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD--------RNICLWRREESGAHSCLAVLTGHTGPVKC-LAVEEDRD 423 (473)
Q Consensus 353 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~ 423 (473)
+.++ ... .+..+ ..+..++++|++|+.++.+ ..|.+|| + ........+|...+.. +.|+ ++
T Consensus 205 ~d~~-~~~-~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~---~~~~~l~~~~~~~~~~~~~~s-dg- 274 (347)
T 2gop_A 205 WEDG-KEE-KMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--G---KEVMGILDEVDRGVGQAKIKD-GK- 274 (347)
T ss_dssp EETT-EEE-EEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--S---SCEEESSTTCCSEEEEEEEET-TE-
T ss_pred eCCC-ceE-EeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--C---CceEeccccCCcccCCccEEc-Cc-
Confidence 4332 222 22233 5556669999988877754 3677787 3 2344445566778886 8998 64
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
++++++.|+.++|| +..
T Consensus 275 -------------~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 275 -------------VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp -------------EEEEEEETTEEEEE-EES
T ss_pred -------------EEEEEecCCcEEEE-EcC
Confidence 68888999999999 874
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=3.8e-11 Score=109.65 Aligned_cols=239 Identities=8% Similarity=0.028 Sum_probs=161.1
Q ss_pred cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 159 SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 159 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
.+...+.++++.++|+++++...++.|.+||.. +..... ... .+...+
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~-~~~------------------------------~~~~~~ 59 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEY-PLP------------------------------TPDAKV 59 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEE-ECS------------------------------STTCCE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEe-cCC------------------------------cccCce
Confidence 345679999999999877776668899999987 442211 110 134568
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCCCee-eEEeecCCCceeEEEEcCCCEE-EEEeCCCcEEEEeCcccCCCcceee
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKC-LESINAHDDAINSVVAGFDSLV-FTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~~~~~v~~l~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
.++++++++.++++...++.|..||.. ++. ...+......+..+++.+++.+ ++...++.|.+||.. +. ..
T Consensus 60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~----~~- 132 (299)
T 2z2n_A 60 MCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GK----IR- 132 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC----EE-
T ss_pred eeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CC----EE-
Confidence 899999999887777768889999986 332 1222234567889999988844 444567899999872 11 11
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEec
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~ 394 (473)
..........+..+++.+++.++++...++.|..||. ++.............+..+. ++|+++++...++.|.+|+.
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 1112234567899999999988888877889999998 43322111222233344444 45777777667889999998
Q ss_pred CCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 395 EESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 395 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
++. .. ......+...+.++++++++. ++++...++.|.+|+..
T Consensus 212 -~g~-~~-~~~~~~~~~~~~~i~~~~~g~-------------l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 212 -SGE-IT-EFKIPTPNARPHAITAGAGID-------------LWFTEWGANKIGRLTSN 254 (299)
T ss_dssp -TCC-EE-EEECSSTTCCEEEEEECSTTC-------------EEEEETTTTEEEEEETT
T ss_pred -CCc-EE-EEECCCCCCCceeEEECCCCC-------------EEEeccCCceEEEECCC
Confidence 432 12 122334556789999999987 66666577889999973
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.54 E-value=6.7e-12 Score=116.96 Aligned_cols=280 Identities=10% Similarity=0.071 Sum_probs=178.7
Q ss_pred EecCCEEEEeeC-----CCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe----------CCCeEEEEeCCC
Q 012007 130 AASGDLLYTGSD-----SKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH----------QDGKIRIWKVSR 192 (473)
Q Consensus 130 ~~~g~~l~tg~~-----dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vwd~~~ 192 (473)
.++++.+++... ++.|.+.|.. +.+..+..-..+ .++++|||++|+++. .++.|.+||..+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 356777776654 5789999865 334444433444 499999999988876 367899999999
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC--CCCEEEEEcCCCeee
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCL 270 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~ 270 (473)
.+......+..-.. .........+.|+|||++|+++.. ++.|.++|+.+++.+
T Consensus 119 ~~v~~~I~v~~g~r-------------------------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 119 LLPTADIELPDAPR-------------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp CCEEEEEEETTCCC-------------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred CeEEEEEECCCccc-------------------------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 88765554321000 001224456899999999999874 688999999999999
Q ss_pred EEeecCCCceeEEEEcCC-CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE-EEEEc-cCCCEEEEeCCCCc
Q 012007 271 ESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT-ALAVN-QESAVVYCGSSDGL 347 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~-~~~~~l~~~~~dg~ 347 (473)
.++..... . ..+... ..+++.+.||.+.+.++...++.. ......+......+. ...|. ++|++++ .+.+|.
T Consensus 174 ~tI~v~g~--~-~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~ 248 (386)
T 3sjl_D 174 RMLDVPDC--Y-HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK 248 (386)
T ss_dssp EEEECCSE--E-EEEEEETTEEEEEETTSCEEEEECCSSSCCE-EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE
T ss_pred EEEECCCc--c-eeecCCCceeEEECCCCCEEEEECCCCCeEE-EeecceeccccccccccceeEcCCCcEEE-EeCCCE
Confidence 98864321 1 222222 267788899999999987533211 100011111112221 23554 6776655 445799
Q ss_pred EEEEecCCccc-cccee------------ecCcceEEEEEecCCEEEEEeC----------CCcEEEEecCCCCceeEEE
Q 012007 348 VNFWECEKHLS-HGGVL------------RGHKMAVLCLAAAGNLVFSGSA----------DRNICLWRREESGAHSCLA 404 (473)
Q Consensus 348 i~iwd~~~~~~-~~~~~------------~~~~~~v~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~ 404 (473)
|.+.|+..... ..... .........++++++.++.... .+.|.++|+.+ .+.+.
T Consensus 249 V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t---~kv~~ 325 (386)
T 3sjl_D 249 IHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT---GERLA 325 (386)
T ss_dssp EEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT---CCEEE
T ss_pred EEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC---CeEEE
Confidence 99999865421 11111 1122334667788887777643 25799999998 45555
Q ss_pred EecCCCCceeEEEEecCCCCCcccccCCCccEEEEE-eeCCCcEEEEEcCCCCC
Q 012007 405 VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYS-GSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 405 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s-~s~Dg~v~iW~i~~~~~ 457 (473)
.+.- ...+..|++++|++. +|++ ...++.|.++|..+++.
T Consensus 326 ~i~v-g~~~~~lavs~D~~~------------~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 326 KFEM-GHEIDSINVSQDEKP------------LLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp EEEE-EEEECEEEECSSSSC------------EEEEEETTTTEEEEEETTTCCE
T ss_pred EEEC-CCCcceEEECCCCCe------------EEEEEcCCCCeEEEEECCCCcE
Confidence 5432 236889999999853 4444 55699999999988763
No 196
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.51 E-value=7.6e-11 Score=116.93 Aligned_cols=278 Identities=13% Similarity=0.115 Sum_probs=171.9
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEe----CCCCEEEEEeC-CCeEEEEeCCCCCee
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIIS----GDSNKIFTGHQ-DGKIRIWKVSRKNAS 196 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s----~~~~~l~s~~~-dg~i~vwd~~~~~~~ 196 (473)
-..+++||+++++++.|+.|.+||+. +.+..+... .....++|+ |||++++++.. ++.|.|+|..+.+..
T Consensus 201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~ 279 (567)
T 1qks_A 201 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 279 (567)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE
Confidence 44567789999999999999999984 223333332 346799999 69999887765 599999999888776
Q ss_pred eEEeecccc----------ccceeEeecCCCcceEEEeecce-------------eeEeeccCCeeEEEEcCCCCEEEEE
Q 012007 197 VHKRVGSLP----------TFKDYVKSSVNPKNYVEVRRNRS-------------VLKIRHYDAVSCLSLNAEQGLLYSG 253 (473)
Q Consensus 197 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~l~~~~~~~~l~s~ 253 (473)
......... ....+..+...+..++....... ...+.......++.|+|++++|+++
T Consensus 280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va 359 (567)
T 1qks_A 280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA 359 (567)
T ss_dssp EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEE
Confidence 655433211 11112222111111111111111 1222344556788999999998877
Q ss_pred e-CCCCEEEEEcCCCeeeEEeec-----CCCceeEEEEcCC-CEEE-EEe-CCCcEEEEeCcccCC-CcceeeeeeeccC
Q 012007 254 S-WDKTLKVWRISDCKCLESINA-----HDDAINSVVAGFD-SLVF-TGS-ADGTVKVWRRELQGK-GTKHCLAQVLLKH 323 (473)
Q Consensus 254 s-~dg~v~vwd~~~~~~~~~~~~-----~~~~v~~l~~~~~-~~l~-s~~-~dg~i~vwd~~~~~~-~~~~~~~~~~~~~ 323 (473)
. .++.|.++|+.+++.+..+.. |.+.-.. .+.|+ +.++ +.. .++.|.++|....+. ......+..+...
T Consensus 360 ~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~ 438 (567)
T 1qks_A 360 ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL 438 (567)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred eCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC
Confidence 6 578899999999998877654 3221111 24676 4444 443 468999999874221 1113334444443
Q ss_pred CccEEEEEEccCCCEEEEeCC-------CCcEEEEecCCc-----ccccceee--------cCcceE--EEEEecCCEEE
Q 012007 324 ENAVTALAVNQESAVVYCGSS-------DGLVNFWECEKH-----LSHGGVLR--------GHKMAV--LCLAAAGNLVF 381 (473)
Q Consensus 324 ~~~v~~l~~~~~~~~l~~~~~-------dg~i~iwd~~~~-----~~~~~~~~--------~~~~~v--~~~~~~~~~l~ 381 (473)
...-..+..+|++++|++... .+.|.++|+.+. ......+. .....+ ..++++|++++
T Consensus 439 g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 518 (567)
T 1qks_A 439 GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVW 518 (567)
T ss_dssp CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEE
T ss_pred CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEE
Confidence 333345778999999998763 358999999865 21111221 112233 44556788877
Q ss_pred EEe-----CCCcEEEEecCCCCceeEEEEecC
Q 012007 382 SGS-----ADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 382 s~~-----~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
.+. .++.|.|+|..+ .+.+..+..
T Consensus 519 ~s~~~~~~~~~~i~v~D~~t---~~~~~~i~~ 547 (567)
T 1qks_A 519 FSVWNGKDQESALVVVDDKT---LELKHVIKD 547 (567)
T ss_dssp EEEECCTTSCCEEEEEETTT---TEEEEEECC
T ss_pred EEeecCCCCCCcEEEEECCC---ceEEEEeCC
Confidence 763 378999999988 466666654
No 197
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.51 E-value=7.9e-12 Score=128.90 Aligned_cols=206 Identities=9% Similarity=0.013 Sum_probs=137.6
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCC-----CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCc--------
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDK-----TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGT-------- 299 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~-------- 299 (473)
|...+..++|+|||++|+.+..++ .|++||+.+++.+.....+ ..+..++|+|++ .|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 334578899999999998776543 8999999999877643322 236789999998 6777777655
Q ss_pred --------EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-----CCcEEEEecCC------ccccc
Q 012007 300 --------VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-----DGLVNFWECEK------HLSHG 360 (473)
Q Consensus 300 --------i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~~~~ 360 (473)
|++|++.... ....++.....+...+..+.|+|||++|+..+. +..|.+||+.+ +....
T Consensus 202 ~~~~~~~~v~~~~l~t~~--~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQ--SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp CCCCCCCEEEEEETTSCG--GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccCCCCEEEEEECCCCc--ccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 9999986432 111222223335566889999999999887654 56899999876 32222
Q ss_pred ceeecCc-ceEEEEEecCCEEEEEeCC----CcEEEEecCCCCceeEEEEecCCCC--ceeEEEEecCCCCCcccccCCC
Q 012007 361 GVLRGHK-MAVLCLAAAGNLVFSGSAD----RNICLWRREESGAHSCLAVLTGHTG--PVKCLAVEEDRDHDHEYHQKGD 433 (473)
Q Consensus 361 ~~~~~~~-~~v~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~~~~~~~~~~ 433 (473)
..+..+. .....++++|+.|+..+.+ +.|.+||+.++... ....+..|.. .|..++|++++.
T Consensus 280 ~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~---------- 348 (710)
T 2xdw_A 280 VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-KWKVLVPEHEKDVLEWVACVRSNF---------- 348 (710)
T ss_dssp EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCEEEEEEEETTTE----------
T ss_pred EEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-cceeccCCCCCCeEEEEEEEcCCE----------
Confidence 3333333 2334578888887776653 35999999874311 1233334433 688899986665
Q ss_pred ccEEEEEeeCCCc--EEEEEcCCCC
Q 012007 434 QRWTVYSGSLDKS--VKVWRVSEHA 456 (473)
Q Consensus 434 ~~~~l~s~s~Dg~--v~iW~i~~~~ 456 (473)
++++...|+. |.+|++..++
T Consensus 349 ---lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 349 ---LVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp ---EEEEEEETTEEEEEEEETTTCC
T ss_pred ---EEEEEEECCEEEEEEEECCCCC
Confidence 8888888985 4556654443
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.50 E-value=2.3e-11 Score=113.02 Aligned_cols=230 Identities=11% Similarity=0.023 Sum_probs=150.0
Q ss_pred EEEEEecCCEE-EEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEee
Q 012007 126 IYSLAASGDLL-YTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRV 201 (473)
Q Consensus 126 V~~~~~~g~~l-~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 201 (473)
...+.++++.+ ++...++.|.+||.. +.+..+. .......+++++++ .|+.+. .++.|.+||..+++.......
T Consensus 46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 46 AQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp EEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence 44566665544 444557899999975 3344443 34678899999898 455555 789999999998875544433
Q ss_pred ccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe--CCCCEEEEEcCCCeeeEEeecCCCc
Q 012007 202 GSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRISDCKCLESINAHDDA 279 (473)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~ 279 (473)
.... +.......+++ ++..|+++. .++.|.++|+.+++.+..+... ..
T Consensus 124 g~~~---------------------------~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~ 173 (328)
T 3dsm_A 124 PDMD---------------------------MESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQ 173 (328)
T ss_dssp TTCC---------------------------TTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SC
T ss_pred CCcc---------------------------ccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CC
Confidence 2100 01123445666 455666665 4889999999999988887753 34
Q ss_pred eeEEEEcCCCEEEEEeC-C----------CcEEEEeCcccCCCcceeeeeeec-cCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 280 INSVVAGFDSLVFTGSA-D----------GTVKVWRRELQGKGTKHCLAQVLL-KHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 280 v~~l~~~~~~~l~s~~~-d----------g~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
...+.+.+++.++.++. + +.|.++|..... ....+. ........++++|+++.|+++.. .
T Consensus 174 p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~------v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~ 245 (328)
T 3dsm_A 174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT------VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D 245 (328)
T ss_dssp BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE------EEEEEECCTTCCCEEEEECTTSCEEEEESS--S
T ss_pred ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe------EEEEEecCCCCCceeEEEecCCCEEEEEcc--E
Confidence 56788899885555444 3 689999986321 122221 11236789999999999988765 8
Q ss_pred EEEEecCCcccccc-eeec--CcceEEEEEec-CCEEEEE----eCCCcEEEEecC
Q 012007 348 VNFWECEKHLSHGG-VLRG--HKMAVLCLAAA-GNLVFSG----SADRNICLWRRE 395 (473)
Q Consensus 348 i~iwd~~~~~~~~~-~~~~--~~~~v~~~~~~-~~~l~s~----~~dg~i~iwd~~ 395 (473)
|.+||..+...... .... ....-.+++++ +.++++. ..++.|.+||..
T Consensus 246 v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 246 IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99999987554221 1221 22233455554 5566665 568899999987
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=2.1e-11 Score=110.00 Aligned_cols=240 Identities=9% Similarity=-0.002 Sum_probs=158.8
Q ss_pred CCEEEEeeCCCcEEEeeCC--ccccccccCc-ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNS-GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
+++|++++.|+.|.+||.. +.+..+..+. ..+.+++++|+|++|+ +.++.|..||. +++........
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~------- 74 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP------- 74 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC-------
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC-------
Confidence 6789999999999999974 4455555554 4789999999999888 45778999999 66655444321
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCCCeeeEEeec------CCCceeE
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINA------HDDAINS 282 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~------~~~~v~~ 282 (473)
....+.++.+.++|+++++.+. ++.|..+|. +++.+..+.. +......
T Consensus 75 ------------------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~ 129 (276)
T 3no2_A 75 ------------------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ 129 (276)
T ss_dssp ------------------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC
T ss_pred ------------------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccC
Confidence 2245778899999999999887 777888875 7887776652 1123445
Q ss_pred EEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc
Q 012007 283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG 361 (473)
Q Consensus 283 l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 361 (473)
+...+++ ++++...++.|..||.. ++. +..+.. ...+.++.+.+++++++++..++.|..+|..++...-.
T Consensus 130 v~~~~~G~~lv~~~~~~~v~~~d~~-G~~------~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 130 INKNKKGNYLVPLFATSEVREIAPN-GQL------LNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp CEECTTSCEEEEETTTTEEEEECTT-SCE------EEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred ceECCCCCEEEEecCCCEEEEECCC-CCE------EEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 5667776 78888889999999986 321 122221 23455678889999999998888999999886554322
Q ss_pred eee----c-CcceEE--EEEecCCEEEEEeCC--------CcEEEEecCCCCceeEEEEecCCC--CceeEEE
Q 012007 362 VLR----G-HKMAVL--CLAAAGNLVFSGSAD--------RNICLWRREESGAHSCLAVLTGHT--GPVKCLA 417 (473)
Q Consensus 362 ~~~----~-~~~~v~--~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~h~--~~V~~l~ 417 (473)
.-. + ....+. .+.++|+++++.... +..+++++... .+.+..+..+. +.|..++
T Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~--g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 202 VNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSE--GKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp EEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTT--SBEEEEECCTTTSCCCCEEE
T ss_pred ecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCC--CCEEEEecCcccccceeeee
Confidence 211 1 111133 334568877776421 23456666432 35555555432 3445443
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=6.6e-11 Score=108.98 Aligned_cols=242 Identities=9% Similarity=0.052 Sum_probs=153.7
Q ss_pred cccEEEEEEeCCCCEEEE-------EeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 161 SGLVKAIIISGDSNKIFT-------GHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s-------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
-....+++|+++++++++ +..++.|.+||..+++...... .. ..+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~---------------------------~~~ 68 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PE---------------------------VNG 68 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CE---------------------------ETT
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cc---------------------------cCC
Confidence 345689999999987777 5778899999987765432110 00 001
Q ss_pred ccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCeeeEE-eec----CCCceeEEEEcCCCEEEEEe-CC---------
Q 012007 234 HYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLES-INA----HDDAINSVVAGFDSLVFTGS-AD--------- 297 (473)
Q Consensus 234 ~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~----~~~~v~~l~~~~~~~l~s~~-~d--------- 297 (473)
+...+.+++++++ ++ |+.++.++.|.+||.. ++.... ... ....+.++++.+++.++.++ .+
T Consensus 69 ~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 3456889999998 65 4445545579999988 665433 221 12357899999988544444 33
Q ss_pred ------CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc----cCCCEEEE-eCCCCcEEEEecC-Cccc----ccc
Q 012007 298 ------GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN----QESAVVYC-GSSDGLVNFWECE-KHLS----HGG 361 (473)
Q Consensus 298 ------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~~~l~~-~~~dg~i~iwd~~-~~~~----~~~ 361 (473)
+.|..||.. + .. .....+......++++ ++++.|+. ...++.|.+||.. .+.. ...
T Consensus 147 ~~~~~~~~l~~~~~~--g--~~----~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~ 218 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD--G--QM----IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG 218 (314)
T ss_dssp TTSSSCEEEEEECTT--S--CE----EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred cccCCCCeEEEECCC--C--CE----EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE
Confidence 456666643 1 11 1112223456889999 99965544 4668899999976 2211 111
Q ss_pred eeecCc-ceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEE
Q 012007 362 VLRGHK-MAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTV 438 (473)
Q Consensus 362 ~~~~~~-~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l 438 (473)
.+.++. ... ++++++|+++++...++.|.+||..++ +.+..+..+...+.+++|++++.. ++
T Consensus 219 ~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~i~~~~dg~~------------l~ 283 (314)
T 1pjx_A 219 HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKT------------IF 283 (314)
T ss_dssp ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB---SCSEEEECSSSCEEEEEECTTSSE------------EE
T ss_pred ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC---cEeEEEeCCCCCceeEEECCCCCE------------EE
Confidence 122222 233 344556888888778899999998853 333444455678999999998872 44
Q ss_pred EEeeCCCcEEEEEcCCC
Q 012007 439 YSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 439 ~s~s~Dg~v~iW~i~~~ 455 (473)
++...++.|..|++...
T Consensus 284 v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 284 VTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEETTTTEEEEEECSSC
T ss_pred EEeCCCCeEEEEeCCCC
Confidence 55556789999998753
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.46 E-value=6.4e-12 Score=129.26 Aligned_cols=200 Identities=6% Similarity=-0.035 Sum_probs=131.6
Q ss_pred ccCCeeEEEEcCCCCEEEE-----EeCCCCEEEEEcCCCeeeEEeecCCCce--eEEEEcCCC-EEEEEeCCCc------
Q 012007 234 HYDAVSCLSLNAEQGLLYS-----GSWDKTLKVWRISDCKCLESINAHDDAI--NSVVAGFDS-LVFTGSADGT------ 299 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s-----~s~dg~v~vwd~~~~~~~~~~~~~~~~v--~~l~~~~~~-~l~s~~~dg~------ 299 (473)
|...+..++|+|||++|+. |+.+..|++||+.+++.+. ..+...+ ..++|+|++ .|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 4456889999999999983 4445689999999988651 1121222 678999998 7777777665
Q ss_pred -------EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC----cEEEEecCCcccccceeecCcc
Q 012007 300 -------VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG----LVNFWECEKHLSHGGVLRGHKM 368 (473)
Q Consensus 300 -------i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~ 368 (473)
|++|++..... ...++.....+...+..+.|+|+|++|+..+.++ .|.+||..++. ..........
T Consensus 197 ~~~~~~~v~~~~l~t~~~--~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~ 273 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPS--KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGA 273 (695)
T ss_dssp GGGGGCEEEEEETTSCGG--GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSC
T ss_pred cCCCCCEEEEEECCCCch--hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCc
Confidence 99999864321 1123333344556789999999999988877665 67777664432 2222222222
Q ss_pred eEEEEEecCCEEEEEeC----CCcEEEEecCCCCceeEEEEecCC-CCceeEEEEecCCCCCcccccCCCccEEEEEeeC
Q 012007 369 AVLCLAAAGNLVFSGSA----DRNICLWRREESGAHSCLAVLTGH-TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 369 ~v~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~ 443 (473)
....+.++|. |+..+. ++.|.+||+.++........+..+ ...|..++|+ ++. ++++...
T Consensus 274 ~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~-------------lv~~~~~ 338 (695)
T 2bkl_A 274 KYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH-------------LSLEYLK 338 (695)
T ss_dssp CEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE-------------EEEEEEE
T ss_pred eEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE-------------EEEEEEE
Confidence 3333446777 544443 578999999774321112223333 4568888888 444 8899999
Q ss_pred CCcEEEEEcC
Q 012007 444 DKSVKVWRVS 453 (473)
Q Consensus 444 Dg~v~iW~i~ 453 (473)
|+..+||.+.
T Consensus 339 dg~~~l~~~~ 348 (695)
T 2bkl_A 339 DATSEVRVAT 348 (695)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 9999998776
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.46 E-value=3.4e-11 Score=115.14 Aligned_cols=233 Identities=11% Similarity=0.105 Sum_probs=157.1
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
.....|+|+++++++++...++.|++||..++....... ...... +
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~---------------------------------~~~~~~-i 176 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP---------------------------------GFKGGK-P 176 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE---------------------------------TCCBCB-C
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec---------------------------------cCCCCc-e
Confidence 467899999999877777777999999998765433221 122233 8
Q ss_pred EEcCCCCEEEEEeCCC--CEEEEEcCCCeeeEEe----ecCCCceeEEEEcC-CCEEEEEeCCCcEEEEeCcccCCCcce
Q 012007 242 SLNAEQGLLYSGSWDK--TLKVWRISDCKCLESI----NAHDDAINSVVAGF-DSLVFTGSADGTVKVWRRELQGKGTKH 314 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~----~~~~~~v~~l~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~ 314 (473)
+|+++++.|+++..++ .|.+|+...+.....+ ......+.++++++ ++.|+.+..++.|..||..... .
T Consensus 177 a~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~----~ 252 (409)
T 3hrp_A 177 AVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE----V 252 (409)
T ss_dssp EECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC----E
T ss_pred eEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC----E
Confidence 9999999999998866 7888988765543333 22456678899999 6777777788899999986322 1
Q ss_pred eeeee--eccCCccE--EEEEEccC-CCEEEEeCCCCcEEEEecCCcccccceeecCc-----------------ceEEE
Q 012007 315 CLAQV--LLKHENAV--TALAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK-----------------MAVLC 372 (473)
Q Consensus 315 ~~~~~--~~~~~~~v--~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~v~~ 372 (473)
..... ..++...- ..++|+|+ +.++++-..++.|+.|+...... .+.++. ..-.+
T Consensus 253 ~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~---~~~g~~~~~g~~dg~~~~~~~~~P~gia 329 (409)
T 3hrp_A 253 TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE---WFCGSATQKTVQDGLREEALFAQPNGMT 329 (409)
T ss_dssp EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE---EEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE---EEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence 11100 11121111 28999995 66666667788999999765311 122211 22355
Q ss_pred EEecCCEEEEEe-CCCcEEEEecCCCCceeEEEEecCC---------------CCceeEEEEecCCCCCcccccCCCccE
Q 012007 373 LAAAGNLVFSGS-ADRNICLWRREESGAHSCLAVLTGH---------------TGPVKCLAVEEDRDHDHEYHQKGDQRW 436 (473)
Q Consensus 373 ~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h---------------~~~V~~l~~~~~~~~~~~~~~~~~~~~ 436 (473)
++++|+++++-. .++.|+.|++.++ . +..+.++ -.....|++++++.
T Consensus 330 ~d~dG~lyvad~~~~~~I~~~~~~~G---~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~------------- 392 (409)
T 3hrp_A 330 VDEDGNFYIVDGFKGYCLRKLDILDG---Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG------------- 392 (409)
T ss_dssp ECTTCCEEEEETTTTCEEEEEETTTT---E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-------------
T ss_pred EeCCCCEEEEeCCCCCEEEEEECCCC---E-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-------------
Confidence 666788777777 7899999997663 2 2333332 23578999999976
Q ss_pred EEEEeeCCCcEEEEEc
Q 012007 437 TVYSGSLDKSVKVWRV 452 (473)
Q Consensus 437 ~l~s~s~Dg~v~iW~i 452 (473)
++++-..++.|+.+++
T Consensus 393 lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 393 YWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEESTTCEEEEEEE
T ss_pred EEEEECCCCeEEEEEe
Confidence 7777778888988775
No 203
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.44 E-value=2.5e-12 Score=120.38 Aligned_cols=171 Identities=9% Similarity=-0.026 Sum_probs=123.5
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCCccc------------cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNLKEF------------SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~~~~------------~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
.+++....++++|+.++ ++||++.... .....+.. |+.|+| |+++|+++ .++.|++||+.+..
T Consensus 43 Lais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~ 117 (388)
T 1xip_A 43 LDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS 117 (388)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT
T ss_pred EEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh
Confidence 37777888999999985 5669743111 12234566 999999 88999998 88999999998765
Q ss_pred eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 195 ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
...... .|...+.++.+.+. .+++++.||.|.+||+.++....
T Consensus 118 ~~~~~~--------------------------------~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~--- 160 (388)
T 1xip_A 118 EFRTVT--------------------------------SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ--- 160 (388)
T ss_dssp CEEEEE--------------------------------ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---
T ss_pred ccCccc--------------------------------eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---
Confidence 322211 25566777777654 38889999999999999877653
Q ss_pred cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeee--eeec---cCCccEEEEEEccCCCEEEE
Q 012007 275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLA--QVLL---KHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~---~~~~~v~~l~~~~~~~~l~~ 341 (473)
+...|.|++|+|+| ++.|..||.+++|+........+..+. ..+. +|...|.+|.|.+++.++++
T Consensus 161 -~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 161 -LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp -EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred -ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 34689999999999 788999999999987632210010110 0112 47889999999999988876
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.43 E-value=7.7e-11 Score=111.86 Aligned_cols=279 Identities=8% Similarity=0.017 Sum_probs=178.2
Q ss_pred ecCCEEEEeeCC-----CcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe----------CCCeEEEEeCCCC
Q 012007 131 ASGDLLYTGSDS-----KNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH----------QDGKIRIWKVSRK 193 (473)
Q Consensus 131 ~~g~~l~tg~~d-----g~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vwd~~~~ 193 (473)
++++.+++.... +.|.++|.. +.+..+..-..+ .++++|||++|+.+. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 356666655542 689999965 344444433444 899999999988876 3678999999998
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC--CCCEEEEEcCCCeeeE
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLE 271 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~ 271 (473)
+......+...... ........+.|+|||++|+++.. ++.|.+.|+.+++.+.
T Consensus 160 ~vv~~I~v~g~~r~-------------------------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~ 214 (426)
T 3c75_H 160 LPIADIELPDAPRF-------------------------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDR 214 (426)
T ss_dssp CEEEEEEETTCCCC-------------------------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred cEEEEEECCCcccc-------------------------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEE
Confidence 87665543210000 01123446889999999999875 5789999999999998
Q ss_pred EeecCCCceeEEEEcCC--CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCcc-EEEEEEccCCCEEEEeCCCCcE
Q 012007 272 SINAHDDAINSVVAGFD--SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA-VTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~~dg~i 348 (473)
.+..... ....|+ ..+++.+.||.+.+.+...+.. ... ....+.....+ ...+.+.+++..++.....+.|
T Consensus 215 ~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v-~~~-~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V 288 (426)
T 3c75_H 215 MLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGET-KVT-NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKI 288 (426)
T ss_dssp EEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCC-EEE-ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEE
T ss_pred EEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcE-EEE-eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcE
Confidence 8875321 222232 3667777889888888732211 100 00011111111 1235678888877777778999
Q ss_pred EEEecCCcccc-cce------------eecCcceEEEEEecCCEEEEEeC----------CCcEEEEecCCCCceeEEEE
Q 012007 349 NFWECEKHLSH-GGV------------LRGHKMAVLCLAAAGNLVFSGSA----------DRNICLWRREESGAHSCLAV 405 (473)
Q Consensus 349 ~iwd~~~~~~~-~~~------------~~~~~~~v~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~ 405 (473)
.+.|....... ... ..........++++++.+++... ++.|.++|..+ .+.+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T---~kvv~~ 365 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET---GERINK 365 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT---CCEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC---CeEEEE
Confidence 99998543210 000 01111223578889887776642 35799999998 455555
Q ss_pred ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee-CCCcEEEEEcCCCCCC
Q 012007 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVSEHAPD 458 (473)
Q Consensus 406 ~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~~~~~ 458 (473)
+.. .....+|+|+|+++. ++++.. .++.|.|+|+.+.+..
T Consensus 366 I~v-g~~P~gia~spDg~~------------~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 366 IEL-GHEIDSINVSQDAEP------------LLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEE-EEEECEEEECCSSSC------------EEEEEETTTTEEEEEETTTCCEE
T ss_pred EEC-CCCcCeEEEccCCCE------------EEEEEcCCCCeEEEEECCCCCEE
Confidence 542 224789999999872 455555 6999999999988654
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.43 E-value=5.3e-11 Score=109.64 Aligned_cols=234 Identities=6% Similarity=0.041 Sum_probs=146.9
Q ss_pred EecCCEEEE-------eeCCCcEEEeeCC-cccccccc-----CcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCe
Q 012007 130 AASGDLLYT-------GSDSKNIRVWKNL-KEFSGFKS-----NSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 130 ~~~g~~l~t-------g~~dg~i~vwd~~-~~~~~~~~-----h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
.++|.++++ +..++.|.+||.. ..+..+.. +...+.+++++++ +++++ ++..+.|.+||.. ++.
T Consensus 26 ~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~ 103 (314)
T 1pjx_A 26 DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTF 103 (314)
T ss_dssp CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCE
T ss_pred CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCE
Confidence 345777777 6778899999854 33333322 4567999999999 65444 4445578999987 543
Q ss_pred eeE-EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC---------------CCE
Q 012007 196 SVH-KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD---------------KTL 259 (473)
Q Consensus 196 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d---------------g~v 259 (473)
... .... .. .....+.+++++++++++++...+ +.|
T Consensus 104 ~~~~~~~~--~~--------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 104 EEIAKKDS--EG--------------------------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp EECCSBCT--TS--------------------------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred EEEEeccC--CC--------------------------ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeE
Confidence 211 1000 00 023457899999999877776554 467
Q ss_pred EEEEcCCCeeeEEeecCCCceeEEEEc----CCC-EEEE-EeCCCcEEEEeCcccCCCcceeeeeeeccCC-ccEEEEEE
Q 012007 260 KVWRISDCKCLESINAHDDAINSVVAG----FDS-LVFT-GSADGTVKVWRRELQGKGTKHCLAQVLLKHE-NAVTALAV 332 (473)
Q Consensus 260 ~vwd~~~~~~~~~~~~~~~~v~~l~~~----~~~-~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~v~~l~~ 332 (473)
..||.. ++.... ..+......++++ +++ .++. ...++.|.+||+...+..........+..+. ..+..+++
T Consensus 156 ~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 156 YCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp EEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred EEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 777765 544332 2233456788898 887 4544 4567899999975211101111222233333 56788999
Q ss_pred ccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEE-EEeCCCcEEEEecCC
Q 012007 333 NQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVF-SGSADRNICLWRREE 396 (473)
Q Consensus 333 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~-s~~~dg~i~iwd~~~ 396 (473)
+++|+++++...++.|.+||.+++... ..+..+...+.++. ++++.|+ +...++.|..|++..
T Consensus 234 d~~G~l~v~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 234 DEDNNLLVANWGSSHIEVFGPDGGQPK-MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp BTTCCEEEEEETTTEEEEECTTCBSCS-EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCCcEe-EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999998888777889999998754332 23334434455555 5688555 445568899999875
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.43 E-value=8.6e-10 Score=100.59 Aligned_cols=238 Identities=11% Similarity=0.057 Sum_probs=158.8
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
....+.+|++.++|++.++...++.|.+||.. ++... .... .....+.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~------------------------------~~~~~~~ 65 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP------------------------------TPDAKVM 65 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS------------------------------STTCCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC------------------------------CCCCcce
Confidence 34678999999999887777678999999987 44322 1110 1335688
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE-EeecCCCceeEEEEcCCCEEE-EEeCCCcEEEEeCcccCCCcceeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE-SINAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
.+++.+++.++++...++.|..||.. ++... .+......+.++++.+++.++ +...++.|..||.. +. .. .
T Consensus 66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~---~~--~ 138 (300)
T 2qc5_A 66 CLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT---IY--E 138 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC---EE--E
T ss_pred eEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC---EE--E
Confidence 99999999877776667889999987 55432 222234678899998888444 44457889999875 21 11 1
Q ss_pred eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecC
Q 012007 318 QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~ 395 (473)
.........+..+++.++++++++...++.|..||... .........+......+. ++|++.++....+.|.+|+..
T Consensus 139 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 139 YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTG-KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT 217 (300)
T ss_dssp EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCC-cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence 11222456789999999999777777788999999843 222111222233444554 457777766667789999983
Q ss_pred CCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 396 ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 396 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
. . .....+..+...+.++++.+++. ++++...++.|..|+..
T Consensus 218 g-~--~~~~~~~~~~~~~~~i~~d~~g~-------------l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 218 G-E--ISEYDIPTPNARPHAITAGKNSE-------------IWFTEWGANQIGRITND 259 (300)
T ss_dssp C-C--EEEEECSSTTCCEEEEEECSTTC-------------EEEEETTTTEEEEECTT
T ss_pred C-c--EEEEECCCCCCCceEEEECCCCC-------------EEEeccCCCeEEEECCC
Confidence 2 1 11222334456789999999987 66666667889999873
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.41 E-value=4.9e-10 Score=102.45 Aligned_cols=219 Identities=11% Similarity=0.094 Sum_probs=141.4
Q ss_pred CcccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 160 NSGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 160 h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
+.....+..|++++. ++++...++.|..||..++.... . .....+
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~---------------------------------~~~~~~ 56 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V---------------------------------TMDAPV 56 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E---------------------------------ECSSCE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E---------------------------------eCCCce
Confidence 334567889999654 55566668899999998765321 1 144578
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec----CCCceeEEEEcCCCEEEEEeC----------CCcEEEEe
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA----HDDAINSVVAGFDSLVFTGSA----------DGTVKVWR 304 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~l~s~~~----------dg~i~vwd 304 (473)
.++++++++++++ +. ++.|.+||..+++....... ....++.+++.+++.++.++. .....+|.
T Consensus 57 ~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~ 134 (297)
T 3g4e_A 57 SSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYS 134 (297)
T ss_dssp EEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEE
T ss_pred EEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEE
Confidence 8999999999554 44 56799999988765433322 124578899999985555442 13345665
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCCCEEE-EeCCCCcEEEEecC--Ccccc-cc---eeecCcceE--EEEEe
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY-CGSSDGLVNFWECE--KHLSH-GG---VLRGHKMAV--LCLAA 375 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~--~~~~~-~~---~~~~~~~~v--~~~~~ 375 (473)
+...+. . ............++|+|+++.|+ +.+.++.|.+||+. ++... .. .+..+.... +++..
T Consensus 135 ~d~~g~--~----~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~ 208 (297)
T 3g4e_A 135 LFPDHH--V----KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA 208 (297)
T ss_dssp ECTTSC--E----EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT
T ss_pred EECCCC--E----EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC
Confidence 542221 1 11222334568899999998665 45667899999873 32211 01 111222233 34455
Q ss_pred cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe-cCCC
Q 012007 376 AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE-EDRD 423 (473)
Q Consensus 376 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~ 423 (473)
+|++.++...++.|.+||..+ .+.+..+..+...+++++|. |++.
T Consensus 209 ~G~lwva~~~~~~v~~~d~~t---G~~~~~i~~p~~~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 209 EGKLWVACYNGGRVIRLDPVT---GKRLQTVKLPVDKTTSCCFGGKNYS 254 (297)
T ss_dssp TSCEEEEEETTTEEEEECTTT---CCEEEEEECSSSBEEEEEEESGGGC
T ss_pred CCCEEEEEcCCCEEEEEcCCC---ceEEEEEECCCCCceEEEEeCCCCC
Confidence 688887777788899999986 35666666666789999998 7766
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.39 E-value=5.9e-11 Score=122.92 Aligned_cols=202 Identities=13% Similarity=0.042 Sum_probs=132.4
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC-----CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCc---------
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD-----KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGT--------- 299 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~--------- 299 (473)
|...+..++|+|||++|+.+..+ ..|++||+.+++.+... .+...+..++|+|+..|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccC
Confidence 33467889999999999887643 35999999999876532 1222235788999876666665543
Q ss_pred -----EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-----cEEEEecCCcc-c-ccceeecCc
Q 012007 300 -----VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-----LVNFWECEKHL-S-HGGVLRGHK 367 (473)
Q Consensus 300 -----i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~-~-~~~~~~~~~ 367 (473)
|++|++.... ....++.....+...+..+.|+|||++|+..+.++ .|.+||+.++. . .........
T Consensus 240 ~~~~~v~~~~lgt~~--~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQ--SADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp CCCCEEEEEETTSCG--GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred CCCCEEEEEECCCCc--hhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 8888875322 11122222233344688999999999888776543 89999987652 1 222322333
Q ss_pred ceEEEEEecCCEEEEEeCC----CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC
Q 012007 368 MAVLCLAAAGNLVFSGSAD----RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 368 ~~v~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~ 443 (473)
.....+.++|+.|+..+.+ +.|.+||+.++. ......+..+...+..++|. ++. ++++...
T Consensus 318 ~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~-------------lv~~~~~ 382 (741)
T 1yr2_A 318 AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNR-------------LFASYIH 382 (741)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTE-------------EEEEEEE
T ss_pred ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCE-------------EEEEEEE
Confidence 3344456889988887754 459999987742 12333344555567778887 333 7899999
Q ss_pred CCcEEEEEcC
Q 012007 444 DKSVKVWRVS 453 (473)
Q Consensus 444 Dg~v~iW~i~ 453 (473)
|+..+||.+.
T Consensus 383 dg~~~l~~~~ 392 (741)
T 1yr2_A 383 DAKSQVLAFD 392 (741)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 9998888765
No 209
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.38 E-value=9.5e-11 Score=120.30 Aligned_cols=241 Identities=11% Similarity=0.072 Sum_probs=150.2
Q ss_pred CcccEEEEEEeCCCCEEEEEe-----CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 160 NSGLVKAIIISGDSNKIFTGH-----QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
|...+..++|||||++||-+. ....|++||+.+++...... +
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~---------------------------------~ 173 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL---------------------------------K 173 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE---------------------------------E
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc---------------------------------C
Confidence 556799999999999888432 23579999999987433211 1
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCC-------------EEEEEcCCCe----eeEEeec-CCCceeEEEEcCCC-EE-EEE
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKT-------------LKVWRISDCK----CLESINA-HDDAINSVVAGFDS-LV-FTG 294 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~-------------v~vwd~~~~~----~~~~~~~-~~~~v~~l~~~~~~-~l-~s~ 294 (473)
......++|+ |++.|+.++.+.. |++|++.+.. ++..... |...+..+.+++++ +| ++.
T Consensus 174 ~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~ 252 (693)
T 3iuj_A 174 DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISA 252 (693)
T ss_dssp EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence 1113467899 9999998887743 9999997754 3333333 44557788999998 33 333
Q ss_pred eC---CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE-EEeCCC---CcEEEEecCCccc-ccceeecC
Q 012007 295 SA---DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV-YCGSSD---GLVNFWECEKHLS-HGGVLRGH 366 (473)
Q Consensus 295 ~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~d---g~i~iwd~~~~~~-~~~~~~~~ 366 (473)
.. +..|.++|+..... ....+..+....... +++++..| +....+ +.|..+|+.+... ....+..|
T Consensus 253 ~~~~~~~~i~~~d~~~~~~-----~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 253 ANSTSGNRLYVKDLSQENA-----PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp ESSSSCCEEEEEETTSTTC-----CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred ccCCCCcEEEEEECCCCCC-----ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence 32 35899999864321 122333444444444 55555544 444443 5799999886532 11233444
Q ss_pred cceEEEEEecCCEEEEEeCCC---cEEEEecCCCCceeEEEEec-CCCCceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 367 KMAVLCLAAAGNLVFSGSADR---NICLWRREESGAHSCLAVLT-GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 367 ~~~v~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
...+..+++++++|+....++ .|++|++... . ...+. ...+.+..+.+++++.. ++++.+
T Consensus 327 ~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---~-~~~l~~p~~~~~~~~~~~~d~~~------------l~~~~s 390 (693)
T 3iuj_A 327 RQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGK---R-VREVALPGLGSVSGFNGKHDDPA------------LYFGFE 390 (693)
T ss_dssp CSSCEEEEEETTEEEEEEEETTEEEEEEECTTSC---E-EEEECCSSSSEEEECCCCTTCSC------------EEEEEE
T ss_pred CCCEEEEEEECCEEEEEEEECCeeEEEEEECCCC---e-eEEeecCCCceEEeeecCCCCCE------------EEEEec
Confidence 433348889998877766544 6888988752 2 22222 34456777788877763 444433
Q ss_pred C---CCcEEEEEcCCCC
Q 012007 443 L---DKSVKVWRVSEHA 456 (473)
Q Consensus 443 ~---Dg~v~iW~i~~~~ 456 (473)
. -++|..||+..++
T Consensus 391 s~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 391 NYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CSSSCCEEEEECTTTCC
T ss_pred CCCCCCEEEEEECCCCe
Confidence 2 2789999987654
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.37 E-value=5.1e-10 Score=102.30 Aligned_cols=221 Identities=10% Similarity=0.069 Sum_probs=136.4
Q ss_pred CCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
+.++++...++.|..||..............+.+++++++|+++++ . ++.|.+||..+++..........
T Consensus 25 ~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~-------- 94 (297)
T 3g4e_A 25 NSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDND-------- 94 (297)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTT--------
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCC--------
Confidence 5577777778999999976432223334578999999999995554 4 56799999987654322211100
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC---------CCEEEEEcCCCeeeEEeecCCCceeEE
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD---------KTLKVWRISDCKCLESINAHDDAINSV 283 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~~~~~v~~l 283 (473)
.....+..++++++|+++++...+ ..-.+|.+.....+..+..+....+.+
T Consensus 95 --------------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi 154 (297)
T 3g4e_A 95 --------------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGL 154 (297)
T ss_dssp --------------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEE
T ss_pred --------------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccce
Confidence 012346789999999966654321 334566554322222333344556889
Q ss_pred EEcCCC--EEEEEeCCCcEEEEeCcc-cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc
Q 012007 284 VAGFDS--LVFTGSADGTVKVWRREL-QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG 360 (473)
Q Consensus 284 ~~~~~~--~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 360 (473)
+|++++ ++++.+.++.|.+|++.. .+..........+..+...+..++++++|++.++...++.|..||..++....
T Consensus 155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence 999998 445666788999998741 11111111222233344568899999999888877778889999998654432
Q ss_pred ceeecCcceEEEEEe---cCCEEEEEe
Q 012007 361 GVLRGHKMAVLCLAA---AGNLVFSGS 384 (473)
Q Consensus 361 ~~~~~~~~~v~~~~~---~~~~l~s~~ 384 (473)
.+..+...+.++++ +++.|++++
T Consensus 235 -~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 235 -TVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp -EEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred -EEECCCCCceEEEEeCCCCCEEEEEc
Confidence 33334344555554 445555444
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.36 E-value=9.8e-12 Score=116.34 Aligned_cols=180 Identities=6% Similarity=0.007 Sum_probs=128.1
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
.++.+++++...++++|+.++ +++|++............ . ........+.. |..|+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~----------------~------~~~~~~~~lp~-V~~l~ 94 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDST----------------P------LTFKWEKEIPD-VIFVC 94 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSC----------------C------CCCSEEEECTT-EEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccc----------------c------ccceEEeeCCC-eeEEE
Confidence 799999999999999999985 666987543210000000 0 00011223666 99999
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeecc
Q 012007 243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK 322 (473)
Q Consensus 243 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 322 (473)
| ++++|+++ .++.|++||+.+.........|...+.++.+.+.. +++++.||.|.+||+..... . .
T Consensus 95 f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~------~----~ 160 (388)
T 1xip_A 95 F--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKST------K----Q 160 (388)
T ss_dssp E--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCE------E----E
T ss_pred E--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcc------c----c
Confidence 9 89999999 78999999998776666677777888888776554 88899999999999973321 1 1
Q ss_pred CCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc-ccee------e---cCcceEEEEEec--CCEEEE
Q 012007 323 HENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH-GGVL------R---GHKMAVLCLAAA--GNLVFS 382 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~------~---~~~~~v~~~~~~--~~~l~s 382 (473)
+...|++++|+|+| ++.|..||.+++|+....... ...+ . +|...|.++.|- +.++++
T Consensus 161 ~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 161 LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 34689999999999 677889999999988764421 1222 2 367888888875 445554
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.33 E-value=1.5e-09 Score=103.73 Aligned_cols=231 Identities=9% Similarity=0.091 Sum_probs=146.4
Q ss_pred cEEEEEe--cCCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCC--eEEEEeCCCCCeeeEE
Q 012007 125 HIYSLAA--SGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG--KIRIWKVSRKNASVHK 199 (473)
Q Consensus 125 ~V~~~~~--~g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~ 199 (473)
....+++ +|+++++...++.|++||.. ..+..+........ ++|+++++.|+++..++ .|.+|+..........
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 3455555 47777777778999999976 33333333233334 99999999999988866 7888887655431111
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE----eec
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES----INA 275 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~----~~~ 275 (473)
.... ......+.+++++|++..|+.+..++.|+.||..++..... ...
T Consensus 211 g~~~----------------------------~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g 262 (409)
T 3hrp_A 211 GQLG----------------------------STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG 262 (409)
T ss_dssp EECC----------------------------TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS
T ss_pred eecc----------------------------chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccC
Confidence 0000 00234567899999666677777888999999987653322 222
Q ss_pred CCCce--eEEEEcCC-C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccC---------------CccEEEEEEccCC
Q 012007 276 HDDAI--NSVVAGFD-S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH---------------ENAVTALAVNQES 336 (473)
Q Consensus 276 ~~~~v--~~l~~~~~-~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---------------~~~v~~l~~~~~~ 336 (473)
+...- ..++++|+ + ++++-..++.|+.|+.... . ..+.++ -.....++++++|
T Consensus 263 ~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-----~---~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG 334 (409)
T 3hrp_A 263 SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-----C---EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG 334 (409)
T ss_dssp CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----E---EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-----E---EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence 22222 38999994 6 4555566788999987521 1 111111 2457899999999
Q ss_pred CEEEEeC-CCCcEEEEecCCcccccceeecC---------------cceE--EEEEecCCEEEEEeCCCcEEEEec
Q 012007 337 AVVYCGS-SDGLVNFWECEKHLSHGGVLRGH---------------KMAV--LCLAAAGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 337 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---------------~~~v--~~~~~~~~~l~s~~~dg~i~iwd~ 394 (473)
+++++-. .++.|+.||+.++... .+.++ -... .++++++.++++-..++.|+.+++
T Consensus 335 ~lyvad~~~~~~I~~~~~~~G~v~--~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 335 NFYIVDGFKGYCLRKLDILDGYVS--TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CEEEEETTTTCEEEEEETTTTEEE--EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CEEEEeCCCCCEEEEEECCCCEEE--EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 9888877 8899999996554321 22222 1122 445556777777777778887765
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=7.5e-10 Score=101.61 Aligned_cols=222 Identities=7% Similarity=0.071 Sum_probs=139.0
Q ss_pred EEecCC-EEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccc
Q 012007 129 LAASGD-LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 129 ~~~~g~-~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
+.++|+ +++++..++.|..|+.......+..+...+..++++++|+++++...++.|.+|+.+ ++......... .
T Consensus 52 ~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~--~- 127 (305)
T 3dr2_A 52 WWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA--G- 127 (305)
T ss_dssp EEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEET--T-
T ss_pred EeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC--C-
Confidence 445677 677777889999998765566666677889999999999866665566889999986 43221111000 0
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE----EeC-------------CCCEEEEEcCCCeee
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS----GSW-------------DKTLKVWRISDCKCL 270 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s----~s~-------------dg~v~vwd~~~~~~~ 270 (473)
.....+..++++++|++.++ |.. .+.|..||..+++..
T Consensus 128 -------------------------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~ 182 (305)
T 3dr2_A 128 -------------------------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ 182 (305)
T ss_dssp -------------------------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE
T ss_pred -------------------------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE
Confidence 02245678999999998876 332 245777777666544
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCC------CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSAD------GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
... .....+.+++++++ .|+.+... +.|.+|++..... .... ............++++++|++ +++.
T Consensus 183 ~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~~~--~~~~~~~~~pdgi~~d~~G~l-wv~~ 256 (305)
T 3dr2_A 183 RMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HDRR--HFASVPDGLPDGFCVDRGGWL-WSSS 256 (305)
T ss_dssp EEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-EEEE--EEECCSSSCCCSEEECTTSCE-EECC
T ss_pred EEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-cCCe--EEEECCCCCCCeEEECCCCCE-EEec
Confidence 333 34456889999998 56666554 7899999863220 0011 111112334567899999994 4555
Q ss_pred CCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCC
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADR 387 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 387 (473)
.+ .|.+|+.... ..............++.++++.|+.++.++
T Consensus 257 ~~-gv~~~~~~g~-~~~~~~~~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 257 GT-GVCVFDSDGQ-LLGHIPTPGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp SS-EEEEECTTSC-EEEEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred CC-cEEEECCCCC-EEEEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence 44 4999998543 222222222223345556788888887664
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.30 E-value=6.4e-09 Score=97.99 Aligned_cols=245 Identities=9% Similarity=-0.005 Sum_probs=153.2
Q ss_pred eeeeeeecccEEEEEecCCEEEEee----------CCCcEEEeeCCc--cccccccC-------cccEEEEEEeCCCCEE
Q 012007 116 IGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNLK--EFSGFKSN-------SGLVKAIIISGDSNKI 176 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~g~~l~tg~----------~dg~i~vwd~~~--~~~~~~~h-------~~~V~~l~~s~~~~~l 176 (473)
+..+....+.=..+++||++|+++. .++.|.+||... .+..+.-. ...-..++|+|||++|
T Consensus 60 ~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l 139 (373)
T 2mad_H 60 LGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL 139 (373)
T ss_pred EEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEE
Confidence 3444333334557888999988886 367899999652 22222111 1234589999999999
Q ss_pred EEEeC--CCeEEEEeCCCCCeeeE-EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEE
Q 012007 177 FTGHQ--DGKIRIWKVSRKNASVH-KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYS 252 (473)
Q Consensus 177 ~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s 252 (473)
+.+.. ++.|.++| .+++.... ... . .|+.+.+++ ..+++
T Consensus 140 ~v~n~~~~~~v~viD-~t~~~~~~~i~~---------------------------------~---~~~~~~~~~~~~~~~ 182 (373)
T 2mad_H 140 LFFQFAAGPAVGLVV-QGGSSDDQLLSS---------------------------------P---TCYHIHPGAPSTFYL 182 (373)
T ss_pred EEEecCCCCeEEEEE-CCCCEEeEEcCC---------------------------------C---ceEEEEeCCCceEEE
Confidence 98874 47899999 88765433 211 1 123444544 45666
Q ss_pred EeCCCCEEEEEcCCCeeeEEee-----cCCCce-eEEEEcCC-CEEEEEeCCCcEEEEeCcccCCCcceeeeeeec----
Q 012007 253 GSWDKTLKVWRISDCKCLESIN-----AHDDAI-NSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL---- 321 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~-----~~~~~v-~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---- 321 (473)
.+.||.+.++|. +++.+.... ....++ ....+.++ +.++..+.++.+.+.|+..... .....+.
T Consensus 183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~----~v~~~~~~~~~ 257 (373)
T 2mad_H 183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA----TNKAPIDALSG 257 (373)
T ss_pred EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc----eEeeeeeecCC
Confidence 778999999999 877664322 111121 12233333 3333334678899999863211 0111110
Q ss_pred ------cCCccEEEEEEccCCCEEEEeCC----------CCcEEEEecCCcccccceeecCcceEEEEEecCC-EEEEEe
Q 012007 322 ------KHENAVTALAVNQESAVVYCGSS----------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-LVFSGS 384 (473)
Q Consensus 322 ------~~~~~v~~l~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~ 384 (473)
........++++|+++.+++... ++.|.++|..+.+....+..++...-..+++||+ +++++.
T Consensus 258 ~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc
Confidence 01223445789999988887643 3579999999876665555556566778889999 777777
Q ss_pred -CCCcEEEEecCCCCceeEEEE
Q 012007 385 -ADRNICLWRREESGAHSCLAV 405 (473)
Q Consensus 385 -~dg~i~iwd~~~~~~~~~~~~ 405 (473)
.++.|.+||..+ .+.+..
T Consensus 338 ~~~~~V~ViD~~t---~~vv~~ 356 (373)
T 2mad_H 338 AGTEVLHIYDAGA---GDQDQS 356 (373)
T ss_pred CCCCeEEEEECCC---CCEEee
Confidence 589999999998 445544
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.30 E-value=6.4e-10 Score=102.06 Aligned_cols=214 Identities=9% Similarity=0.121 Sum_probs=131.7
Q ss_pred CcccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 160 NSGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 160 h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
.........|+++++ ++++...++.|..|+.. +.... .. .+...+
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~-~~--------------------------------~~~~~~ 88 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDV-LL--------------------------------DATAFT 88 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEE-EE--------------------------------ESCSCE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEE-Ee--------------------------------CCCCcc
Confidence 444567899999998 56666678999999874 33211 11 144568
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec----CCCceeEEEEcCCCEEEE-----EeC-------------
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA----HDDAINSVVAGFDSLVFT-----GSA------------- 296 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~l~s-----~~~------------- 296 (473)
..++++++|+++++...++.|.+|+.. ++....... ....++.+++.+++.++. |..
T Consensus 89 ~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~ 167 (305)
T 3dr2_A 89 NGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA 167 (305)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred ceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence 899999999866665556789999975 543222111 123467899999985554 332
Q ss_pred CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC------CcEEEEecCCcccc-cceee-cCcc
Q 012007 297 DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD------GLVNFWECEKHLSH-GGVLR-GHKM 368 (473)
Q Consensus 297 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~-~~~~~-~~~~ 368 (473)
.+.|..||...+. . ... . .......++|+|+++.|+.+... +.|.+|++...... ...+. ....
T Consensus 168 ~~~v~~~d~~~g~---~---~~~-~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 168 HHSVYRLPPDGSP---L---QRM-A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG 239 (305)
T ss_dssp CEEEEEECSSSCC---C---EEE-E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred CCeEEEEcCCCCc---E---EEE-e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence 2456666654221 1 111 1 23456789999999987777654 68999998643210 00110 0011
Q ss_pred --eEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 369 --AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 369 --~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.-+++..+|++ .++..+ .|.+|+... +.+..+..+. .+.+++|.+++.
T Consensus 240 ~pdgi~~d~~G~l-wv~~~~-gv~~~~~~g----~~~~~~~~~~-~~~~~~f~~d~~ 289 (305)
T 3dr2_A 240 LPDGFCVDRGGWL-WSSSGT-GVCVFDSDG----QLLGHIPTPG-TASNCTFDQAQQ 289 (305)
T ss_dssp CCCSEEECTTSCE-EECCSS-EEEEECTTS----CEEEEEECSS-CCCEEEECTTSC
T ss_pred CCCeEEECCCCCE-EEecCC-cEEEECCCC----CEEEEEECCC-ceeEEEEeCCCC
Confidence 12455667884 444445 499999854 3444554444 589999998876
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.29 E-value=4.8e-10 Score=104.51 Aligned_cols=269 Identities=9% Similarity=0.017 Sum_probs=164.6
Q ss_pred cceeeeeeecccEEEEEecCCEEEEee----------CCCcEEEeeCCc--cccccccC-------cccEEEEEEeCCCC
Q 012007 114 GLIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNLK--EFSGFKSN-------SGLVKAIIISGDSN 174 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g~~l~tg~----------~dg~i~vwd~~~--~~~~~~~h-------~~~V~~l~~s~~~~ 174 (473)
..+.++.....+-..+++||++|+++. .++.|.+||... .+..+.-. ...-..++|+|||+
T Consensus 70 ~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk 149 (386)
T 3sjl_D 70 RVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK 149 (386)
T ss_dssp EEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred eEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC
Confidence 344444433333378888999887775 367899999753 23333211 12456789999999
Q ss_pred EEEEEeC--CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 175 KIFTGHQ--DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 175 ~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
+|+.+.. ++.|.++|+.+.+......+.. + ...+......+++
T Consensus 150 ~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----------------------------------~-~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 150 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----------------------------------C-YHIFPTAPDTFFM 194 (386)
T ss_dssp EEEEEECSSSCEEEEEETTTTEEEEEEECCS----------------------------------E-EEEEEEETTEEEE
T ss_pred EEEEEEcCCCCeEEEEECCCCcEEEEEECCC----------------------------------c-ceeecCCCceeEE
Confidence 9998864 6899999999987665443210 0 1122224456667
Q ss_pred EeCCCCEEEEEcCC-CeeeEEeecCC----Ccee-EEEE-cCCCEEEEEeCCCcEEEEeCcccCCC--cceeeeee----
Q 012007 253 GSWDKTLKVWRISD-CKCLESINAHD----DAIN-SVVA-GFDSLVFTGSADGTVKVWRRELQGKG--TKHCLAQV---- 319 (473)
Q Consensus 253 ~s~dg~v~vwd~~~-~~~~~~~~~~~----~~v~-~l~~-~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~---- 319 (473)
.+.||.+.+.++.+ ++.......+. ..+. ...| .+++.++..+.+|.|.+.|+...... ....+...
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 274 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccc
Confidence 77788888888765 45432211111 1221 1244 46776555777899999998633210 00000000
Q ss_pred eccCCccEEEEEEccCCCEEEEeCC----------CCcEEEEecCCcccccceeecCcceEEEEEecCC-EEEEE-eCCC
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSS----------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-LVFSG-SADR 387 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~-~~dg 387 (473)
..-.......++++++++.++.... .+.|.++|+.+.+....+..++...-+.++++++ +|++. ..++
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~ 354 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDK 354 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTT
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCC
Confidence 0001123335777999988887642 2579999999987777777777666788889986 66665 4589
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
.|.++|..+ .+.+..+..- +.-+.|.+++|
T Consensus 355 ~VsViD~~t---~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 355 TLYIHDAES---GEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEEEETTT---CCEEEEECCC-CSSCCEEEECC
T ss_pred eEEEEECCC---CcEEEEecCC-CCCceeEECCc
Confidence 999999998 4556655432 22355566655
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.28 E-value=5.5e-09 Score=96.78 Aligned_cols=213 Identities=10% Similarity=0.048 Sum_probs=133.1
Q ss_pred EEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 164 VKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 164 V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
..+.+|++++. ++++...++.|..||..+++... . .....+.+++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~---------------------------------~~~~~v~~i~ 96 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H---------------------------------ALPFMGSALA 96 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E---------------------------------ECSSCEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E---------------------------------ECCCcceEEE
Confidence 46778999754 55566668899999998764321 1 1335688999
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec----CCCceeEEEEcCCCEEEEEeCC-----CcEEEEeCcccCCCcc
Q 012007 243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESINA----HDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKGTK 313 (473)
Q Consensus 243 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~ 313 (473)
|+++++++++. .+ .|.+||..+++....... ....++.+.+.+++.++.++.+ +...||.+. .+ ..
T Consensus 97 ~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g--~~ 171 (326)
T 2ghs_A 97 KISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG--KV 171 (326)
T ss_dssp EEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT--EE
T ss_pred EeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC--cE
Confidence 99998876654 44 499999988775433221 1235889999999855544432 234444443 11 11
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecC--Cc-ccc-ccee---ecCcceEEEE--EecCCEEEEE
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECE--KH-LSH-GGVL---RGHKMAVLCL--AAAGNLVFSG 383 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~--~~-~~~-~~~~---~~~~~~v~~~--~~~~~~l~s~ 383 (473)
. .+.........++|+|+++.|+. .+.++.|.+||+. ++ ... ...+ .........+ ..+|++.++.
T Consensus 172 ~----~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~ 247 (326)
T 2ghs_A 172 T----KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR 247 (326)
T ss_dssp E----EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred E----EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence 1 11122335678999999987654 4567899999985 43 211 1111 1122233334 4458777776
Q ss_pred eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe-cCCC
Q 012007 384 SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE-EDRD 423 (473)
Q Consensus 384 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~ 423 (473)
..++.|.+|+... +.+..+..+...+++++|. +++.
T Consensus 248 ~~~~~v~~~d~~g----~~~~~i~~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 248 WGEGAVDRYDTDG----NHIARYEVPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp ETTTEEEEECTTC----CEEEEEECSCSBEEEEEEESTTSC
T ss_pred eCCCEEEEECCCC----CEEEEEECCCCCcEEEEEecCCCC
Confidence 6678899999843 3455555566679999998 7766
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.26 E-value=4.4e-09 Score=97.45 Aligned_cols=222 Identities=10% Similarity=0.007 Sum_probs=134.1
Q ss_pred EEEec-CCEEEEeeCCCcEEEeeCCcc-ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 128 SLAAS-GDLLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 128 ~~~~~-g~~l~tg~~dg~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
.+.++ +.++++...++.|.+||.... ...+ .....+.+++|+++|+++++. .+ .|.+||..+++..........
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~- 130 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESD- 130 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTT-
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCC-
Confidence 34555 456777777889999987533 2222 235679999999999877654 44 499999887764322111000
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC------CCCEEEEEcCCCeeeEEeecCCCc
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW------DKTLKVWRISDCKCLESINAHDDA 279 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~ 279 (473)
.....+.+++++++|+++++... .+.|..++ +++... +..+...
T Consensus 131 ---------------------------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~ 180 (326)
T 2ghs_A 131 ---------------------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISI 180 (326)
T ss_dssp ---------------------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESS
T ss_pred ---------------------------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcc
Confidence 01235788999999987665432 23455555 555433 3233345
Q ss_pred eeEEEEcCCC-EE-EEEeCCCcEEEEeCc--ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC
Q 012007 280 INSVVAGFDS-LV-FTGSADGTVKVWRRE--LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 280 v~~l~~~~~~-~l-~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
...++|++++ .+ ++.+.++.|.+||+. .+-..........+......+..++++++|.+.++...++.|.+||...
T Consensus 181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g 260 (326)
T 2ghs_A 181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG 260 (326)
T ss_dssp EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC
Confidence 6789999998 44 455567899999975 2201111111122223345678899999998877776678899999843
Q ss_pred cccccceeecCcceEEEEEe---cCCEEEEEeC
Q 012007 356 HLSHGGVLRGHKMAVLCLAA---AGNLVFSGSA 385 (473)
Q Consensus 356 ~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~ 385 (473)
... ..+..+...+.++++ +++.|++++.
T Consensus 261 -~~~-~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 261 -NHI-ARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp -CEE-EEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred -CEE-EEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 222 233334444555554 4555555443
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.25 E-value=4.8e-10 Score=104.67 Aligned_cols=260 Identities=7% Similarity=-0.002 Sum_probs=160.5
Q ss_pred cEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe----------CCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 144 NIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH----------QDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 144 ~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
.|.+.|.. +.+..+.....+ .+.++||+++|+++. .++.|.+||..+.+......+.....+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~---- 120 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF---- 120 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC----
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc----
Confidence 77788854 444455444445 799999999999886 368899999999987766554310000
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC--CCCEEE--EEcCCCeeeEEeecCCCceeEEEEcC
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKV--WRISDCKCLESINAHDDAINSVVAGF 287 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~v~v--wd~~~~~~~~~~~~~~~~v~~l~~~~ 287 (473)
........+.++|||++|+++.. +..|.+ +|+.+ +..+..... + .+....
T Consensus 121 ---------------------~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-~-~~~p~g 174 (368)
T 1mda_H 121 ---------------------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-F-HIHPGA 174 (368)
T ss_dssp ---------------------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-C-CCEEEE
T ss_pred ---------------------ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-e-EEccCC
Confidence 00123456899999999999975 356888 88877 445542211 1 121122
Q ss_pred CCEEEEEeCCCcEEEEeCcc----cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc-ccce
Q 012007 288 DSLVFTGSADGTVKVWRREL----QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS-HGGV 362 (473)
Q Consensus 288 ~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~ 362 (473)
...+++.+.||.+.+.|+.. .++...... ....-...+. . .+++..++..+. +.|.+.|...... ....
T Consensus 175 ~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~ 248 (368)
T 1mda_H 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAA 248 (368)
T ss_dssp TTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECC
T ss_pred CeEEEEEcCCCCEEEEECccccccCCeEEEEee-eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEE
Confidence 23666777899988888864 111000000 0111122333 3 555555555555 8999999864211 1000
Q ss_pred ------------eecCcceEEEEEecCCEEEEEeC---------CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 363 ------------LRGHKMAVLCLAAAGNLVFSGSA---------DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 363 ------------~~~~~~~v~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
..........++++++.++.+.. ++.+.++|+.+ .+.+..+.... ...+|+|+++
T Consensus 249 ~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t---~~vv~~i~vg~-~p~gi~~s~D 324 (368)
T 1mda_H 249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV---GQTSGPISNGH-DSDAIIAAQD 324 (368)
T ss_dssp CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS---CCEEECCEEEE-EECEEEECCS
T ss_pred EEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC---CeEEEEEECCC-CcceEEECCC
Confidence 11112222578999888886543 23566999998 45566554332 5899999999
Q ss_pred CCCCcccccCCCccEEEEEee-CCCcEEEEEcCCCCC
Q 012007 422 RDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVSEHAP 457 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~~~~ 457 (473)
++. ++++.. .++.|.++|+.+.+.
T Consensus 325 g~~------------l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 325 GAS------------DNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp SSC------------EEEEEETTTTEEEEEESSSCEE
T ss_pred CCE------------EEEEccCCCCeEEEEECCCCcE
Confidence 874 677777 699999999988764
No 220
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.24 E-value=8.2e-09 Score=97.67 Aligned_cols=288 Identities=9% Similarity=0.069 Sum_probs=160.1
Q ss_pred cCCEEEEeeCCCcEEEeeCC--ccccccccC---------cccE-EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 132 SGDLLYTGSDSKNIRVWKNL--KEFSGFKSN---------SGLV-KAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h---------~~~V-~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
.+..|++++.++.|..+|.. +.+-.+... ...+ ..+.. ++..|+.++.++.|..+|..+++.....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 46677777777888888754 222122111 1223 22333 3458888899999999999998876655
Q ss_pred eeccccccc------eeEeecCCCcceEEEe--ecceeeEeeccCCe------eEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 200 RVGSLPTFK------DYVKSSVNPKNYVEVR--RNRSVLKIRHYDAV------SCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 200 ~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v------~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
......... .++....+ ..+..+. .............+ ..... .+..++.+..++.|..+|..
T Consensus 130 ~~~~~~~~~p~~~~~~v~v~~~~-g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~ 206 (376)
T 3q7m_A 130 KVAGEALSRPVVSDGLVLIHTSN-GQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLME 206 (376)
T ss_dssp ECSSCCCSCCEEETTEEEEECTT-SEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETT
T ss_pred eCCCceEcCCEEECCEEEEEcCC-CeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECC
Confidence 543211110 11111111 1111111 11111111111111 11112 24578888889999999999
Q ss_pred CCeeeEEeecCCCc----------eeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC
Q 012007 266 DCKCLESINAHDDA----------INSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE 335 (473)
Q Consensus 266 ~~~~~~~~~~~~~~----------v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 335 (473)
+++.+......... +.......++.++.++.++.+..+|.+.+.. . -... ......+.. +
T Consensus 207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~-----~-w~~~--~~~~~~~~~--~ 276 (376)
T 3q7m_A 207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI-----M-WKRE--LGSVNDFIV--D 276 (376)
T ss_dssp TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE-----E-EEEC--CCCEEEEEE--E
T ss_pred CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE-----E-eecc--CCCCCCceE--E
Confidence 99988776532110 1111111256888888999999999875431 1 1111 122334444 3
Q ss_pred CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeE
Q 012007 336 SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKC 415 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~ 415 (473)
+..|++++.++.|..+|..++...-................+..|+.++.+|.|.++|..++ +.+.........+..
T Consensus 277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG---~~~~~~~~~~~~~~~ 353 (376)
T 3q7m_A 277 GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDG---RFVAQQKVDSSGFQT 353 (376)
T ss_dssp TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTC---CEEEEEECCTTCBCS
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCC---cEEEEEecCCCccee
Confidence 56777888899999999987654322211111122223335788999999999999999884 444444432233322
Q ss_pred EEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 416 LAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
.....++ .|+.++.||.|..|+
T Consensus 354 ~~~~~~~--------------~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 354 EPVAADG--------------KLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCEEETT--------------EEEEEBTTSCEEEEE
T ss_pred CCEEECC--------------EEEEEeCCCEEEEEe
Confidence 1112233 588888999999987
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.23 E-value=4.1e-09 Score=98.39 Aligned_cols=263 Identities=11% Similarity=0.027 Sum_probs=156.2
Q ss_pred ccEEEEEe--cCCEEEEee--CCCcEEEeeC-Cccccc-------cccCcccEEEEEEeCCCCEEEEEeC-----CCeEE
Q 012007 124 GHIYSLAA--SGDLLYTGS--DSKNIRVWKN-LKEFSG-------FKSNSGLVKAIIISGDSNKIFTGHQ-----DGKIR 186 (473)
Q Consensus 124 ~~V~~~~~--~g~~l~tg~--~dg~i~vwd~-~~~~~~-------~~~h~~~V~~l~~s~~~~~l~s~~~-----dg~i~ 186 (473)
.....++. +|+++++.. .++.++||.+ ...+.. ...|-..+..|+++++++++++-.. ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 45556654 578887753 2343455543 222221 1235568999999999876555433 57899
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe----CCCCEEEE
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS----WDKTLKVW 262 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s----~dg~v~vw 262 (473)
+||+.+++............ .+...+..+++++++..++.+. .++.|.+|
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~--------------------------~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPIT--------------------------LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEETTTTEEEEEEECCTTTS--------------------------CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred EEECCCCeEEEEEECChhhc--------------------------ccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 99998877544333211000 1344568899998655555543 57899999
Q ss_pred EcCCCeeeEEeecCCCcee-EEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEE
Q 012007 263 RISDCKCLESINAHDDAIN-SVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340 (473)
Q Consensus 263 d~~~~~~~~~~~~~~~~v~-~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 340 (473)
|+.+++..+.+..|..... ...+..++ .+.+.+.++.++.|. ..+..|+|+|+++.|+
T Consensus 151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg~~ly 210 (343)
T 2qe8_A 151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAENEWLY 210 (343)
T ss_dssp ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTSCEEE
T ss_pred ECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------------cccceeEeccCCCEEE
Confidence 9998887776654422111 02222344 444556667665553 2357899999999888
Q ss_pred EeCCCC-cEEEEecCC---cc----c-ccc-eeecCcc--eEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 341 CGSSDG-LVNFWECEK---HL----S-HGG-VLRGHKM--AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 341 ~~~~dg-~i~iwd~~~---~~----~-~~~-~~~~~~~--~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
.+..++ .|..++... .. . ... ...++.. .-++++.+|+++++...++.|.+||..++. ...+... .
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~-~ 288 (343)
T 2qe8_A 211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVTD-E 288 (343)
T ss_dssp EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEEC-G
T ss_pred EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEEC-C
Confidence 877665 455554321 00 0 000 1112211 235677789999999899999999984422 2222221 1
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcE
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSV 447 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v 447 (473)
+...+.+++|.+++. ++++.+..+.+
T Consensus 289 ~~~~p~~va~~~~g~-------------l~v~~~~~~~~ 314 (343)
T 2qe8_A 289 KLSWTDSFNFGSDGY-------------LYFDCNQLHHS 314 (343)
T ss_dssp GGSCEEEEEECTTSC-------------EEEEECCGGGS
T ss_pred ceecCCeeEECCCCc-------------EEEEeCccccc
Confidence 245689999999876 66666644444
No 222
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.13 E-value=9.4e-09 Score=95.16 Aligned_cols=263 Identities=14% Similarity=0.110 Sum_probs=159.7
Q ss_pred cEEEEEec-CCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 125 HIYSLAAS-GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 125 ~V~~~~~~-g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.+.++..+ +..|+.++.+ |..+|.. +.+..+...........+. +..|+.++.++.|..+|.. ++.......
T Consensus 61 ~~~~~~~~~~g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~- 134 (330)
T 3hxj_A 61 IECRPSIGKDGTIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKT- 134 (330)
T ss_dssp EEECCEETTTTEECCSSCE--EEEECCCGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEEC-
T ss_pred cccceEEecCCcEEEecCc--EEEECCCCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcC-
Confidence 34556655 5566777665 8888753 2222333333333334444 4477888889999999987 554332221
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeE
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS 282 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~ 282 (473)
....+.++...+++. |+.++.++.|..+|.. ++.+..+......+.+
T Consensus 135 -------------------------------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~ 181 (330)
T 3hxj_A 135 -------------------------------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSA 181 (330)
T ss_dssp -------------------------------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred -------------------------------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceee
Confidence 223345556666665 6667888999999998 8887777766667778
Q ss_pred EEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce
Q 012007 283 VVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362 (473)
Q Consensus 283 l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 362 (473)
+....++.++.++ +.|..+| ..+. ...........+.++...+++.+. .++.++.|..+|... .... .
T Consensus 182 ~~~d~~g~l~v~t--~~l~~~d-~~g~------~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~~g-~~~~-~ 249 (330)
T 3hxj_A 182 ASIGKDGTIYFGS--DKVYAIN-PDGT------EKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINPDG-TEKW-R 249 (330)
T ss_dssp CEECTTCCEEEES--SSEEEEC-TTSC------EEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEECTTS-CEEE-E
T ss_pred eEEcCCCEEEEEe--CEEEEEC-CCCc------EEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEECCCC-CEeE-E
Confidence 8887778777777 8899998 3221 111222234557788888887644 566677888887543 2221 1
Q ss_pred eecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 363 LRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 363 ~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
..........+..+ +..|+.++.+|.|..+|. + .+.+..+......+.++...+++. |..+
T Consensus 250 ~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~---g~~~~~~~~~~~~~~~~~~d~~g~--------------l~~g 311 (330)
T 3hxj_A 250 FKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-D---GTEKWNFETGSWIIATPVIDENGT--------------IYFG 311 (330)
T ss_dssp EECSSCCCSCCEECTTSCEEEECTTCEEEEECT-T---SCEEEEEECSSCCCSCCEECTTCC--------------EEEE
T ss_pred eeCCCCccccceEcCCCeEEEecCCCCEEEECC-C---CcEEEEEEcCCccccceEEcCCCE--------------EEEE
Confidence 12111111222333 556778888889999986 3 233344444455677788777775 6778
Q ss_pred eCCCcEEEEEcCCCC
Q 012007 442 SLDKSVKVWRVSEHA 456 (473)
Q Consensus 442 s~Dg~v~iW~i~~~~ 456 (473)
+.+|.+++......+
T Consensus 312 t~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 312 TRNGKFYALFNLEHH 326 (330)
T ss_dssp CTTSCEEEEEC----
T ss_pred cCCCeEEEEeccccc
Confidence 899999998876544
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.12 E-value=1.5e-08 Score=103.36 Aligned_cols=281 Identities=14% Similarity=0.128 Sum_probs=157.9
Q ss_pred ecCCEEEEeeCCCcEEEeeCC--cccccccc--Cc---ccEEE-EEEeCCCCEEEEEe------CCCeEEEEeCCCCCee
Q 012007 131 ASGDLLYTGSDSKNIRVWKNL--KEFSGFKS--NS---GLVKA-IIISGDSNKIFTGH------QDGKIRIWKVSRKNAS 196 (473)
Q Consensus 131 ~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~--h~---~~V~~-l~~s~~~~~l~s~~------~dg~i~vwd~~~~~~~ 196 (473)
.++..|++++.|+.|..+|.. +.+-.+.. +. ..+.+ -.+. ++ .++.+. .+|.|+.||..+++..
T Consensus 119 ~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 196 (689)
T 1yiq_A 119 VWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NG-KVVIGNGGAEFGVRGYVTAYDAETGKEA 196 (689)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred EECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CC-EEEEEeCCCccCCCCEEEEEECCCCcEE
Confidence 356788888889999999864 22222211 11 11111 1111 44 455443 3789999999999876
Q ss_pred eEEeecc-ccccc---e-e-EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCC------------
Q 012007 197 VHKRVGS-LPTFK---D-Y-VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT------------ 258 (473)
Q Consensus 197 ~~~~~~~-~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~------------ 258 (473)
-...... .+... . + ............ ...++......++++++..+++.+..++.
T Consensus 197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~-------~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~g 269 (689)
T 1yiq_A 197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYV-------EQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKG 269 (689)
T ss_dssp EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHH-------HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCS
T ss_pred EEecccCCCcccccccccccccccccCCceee-------ecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCC
Confidence 6554211 00000 0 0 000000000000 00012223346788898899999987763
Q ss_pred -------EEEEEcCCCeeeEEeec--CC-------CceeEEEEcCCC----EEEEEeCCCcEEEEeCcccCCCcceeee-
Q 012007 259 -------LKVWRISDCKCLESINA--HD-------DAINSVVAGFDS----LVFTGSADGTVKVWRRELQGKGTKHCLA- 317 (473)
Q Consensus 259 -------v~vwd~~~~~~~~~~~~--~~-------~~v~~l~~~~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~- 317 (473)
|..||..+|+.+..++. |. ..+.......++ .++.++.+|.++++|.++++........
T Consensus 270 d~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~ 349 (689)
T 1yiq_A 270 DNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVP 349 (689)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred CceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccc
Confidence 99999999999988764 21 111111211233 6888999999999998765431100000
Q ss_pred ----ee-----------------eccCCcc-----------EEEEEEccCCCEEEEeCC---------------------
Q 012007 318 ----QV-----------------LLKHENA-----------VTALAVNQESAVVYCGSS--------------------- 344 (473)
Q Consensus 318 ----~~-----------------~~~~~~~-----------v~~l~~~~~~~~l~~~~~--------------------- 344 (473)
.. ....... -..++++|+..++++...
T Consensus 350 ~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~ 429 (689)
T 1yiq_A 350 QSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSM 429 (689)
T ss_dssp CSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTS
T ss_pred cccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccc
Confidence 00 0000000 123788888887776522
Q ss_pred ------------------------CCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCce
Q 012007 345 ------------------------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAH 400 (473)
Q Consensus 345 ------------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 400 (473)
+|.|..||+.+++..-....+....--.+...+.+++.|+.||.|+.||.++ .
T Consensus 430 ~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~t---G 506 (689)
T 1yiq_A 430 YQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADT---G 506 (689)
T ss_dssp CCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTT---C
T ss_pred cccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCC---C
Confidence 3779999998876543332222111135667889999999999999999999 4
Q ss_pred eEEEEecCCCC-ceeEEEEecCCC
Q 012007 401 SCLAVLTGHTG-PVKCLAVEEDRD 423 (473)
Q Consensus 401 ~~~~~~~~h~~-~V~~l~~~~~~~ 423 (473)
+.+..+....+ .-.-+.|..+++
T Consensus 507 ~~lw~~~~~~~~~~~p~ty~~~G~ 530 (689)
T 1yiq_A 507 EKLWEQPAASGVMAAPVTYSVDGE 530 (689)
T ss_dssp CEEEEEECSSCCCSCCEEEEETTE
T ss_pred ccceeeeCCCCcccCceEEEECCE
Confidence 55655553322 224567777776
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.10 E-value=6.7e-09 Score=106.53 Aligned_cols=233 Identities=15% Similarity=0.118 Sum_probs=138.9
Q ss_pred EEEecCCEEEEe-----eCCCcEEEeeCCccccccccCccc--EEEEEEeCCCCEEEEEeCCC-------------eEEE
Q 012007 128 SLAASGDLLYTG-----SDSKNIRVWKNLKEFSGFKSNSGL--VKAIIISGDSNKIFTGHQDG-------------KIRI 187 (473)
Q Consensus 128 ~~~~~g~~l~tg-----~~dg~i~vwd~~~~~~~~~~h~~~--V~~l~~s~~~~~l~s~~~dg-------------~i~v 187 (473)
++++||++||.+ +.+..|++||+..... +..+... ...++|+ |++.|+.+..+. .|++
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~-~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~ 212 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQP-LETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF 212 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSE-EEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCC-CccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence 567789988843 3345799999763321 1112222 3578999 999999888774 3889
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee-ccCCeeEEEEcCCCCEEEEEeC----CCCEEEE
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR-HYDAVSCLSLNAEQGLLYSGSW----DKTLKVW 262 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~s~----dg~v~vw 262 (473)
|++.+........... .. |...+..+.|+|||++|+.... +..|+++
T Consensus 213 ~~lgt~~~~~~~v~~~----------------------------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 213 HRLGTAQEDDRLVFGA----------------------------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVK 264 (693)
T ss_dssp EETTSCGGGCEEEESC----------------------------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEE
T ss_pred EECCCCcccceEEEec----------------------------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEE
Confidence 9987764321111110 01 2334678899999998865442 2479999
Q ss_pred EcCCCe-eeEEeecCCCceeEEEEcCCC-EEEEEeCC---CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCC
Q 012007 263 RISDCK-CLESINAHDDAINSVVAGFDS-LVFTGSAD---GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337 (473)
Q Consensus 263 d~~~~~-~~~~~~~~~~~v~~l~~~~~~-~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 337 (473)
|+.++. ....+..+...........++ +++....+ +.|..+|+...... ....+..|...+. .|+++++
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~----~~~~l~~~~~~~~--~~s~~g~ 338 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA----HWRDLIPERQQVL--TVHSGSG 338 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG----GCEEEECCCSSCE--EEEEETT
T ss_pred ECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc----ccEEEecCCCCEE--EEEEECC
Confidence 997763 345555566655554333344 44444443 57888888643210 1123344555554 8888888
Q ss_pred EEEEeCCCC---cEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCC----CcEEEEecCCC
Q 012007 338 VVYCGSSDG---LVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSAD----RNICLWRREES 397 (473)
Q Consensus 338 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~d----g~i~iwd~~~~ 397 (473)
.|+....++ .|++||+..... ..........+..++ +++..|+....+ +.|..||+.++
T Consensus 339 ~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 339 YLFAEYMVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEEEEEETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEEEEECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 877665544 688999875432 222222334444444 456555544434 78999998763
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=110.28 Aligned_cols=202 Identities=13% Similarity=0.105 Sum_probs=108.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
++..|++++.||.|+.||..+++....... +.+.+..+..++..++
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------------------------------~~~~s~p~~~~g~~~v 53 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----------------------------------DPVLQVPTHVEEPAFL 53 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----------------------------------CCSCCCC-----CCEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----------------------------------CCceecceEcCCCEEE
Confidence 466999999999999999999987654432 2222333445677788
Q ss_pred EEeCCCCEEEEEcCCCeeeEEeecCCC-cee-EEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEE
Q 012007 252 SGSWDKTLKVWRISDCKCLESINAHDD-AIN-SVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 252 s~s~dg~v~vwd~~~~~~~~~~~~~~~-~v~-~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (473)
+++.|+.|+.||.++++.+..+..+.. .+. ...+..++.+++++.|+.|+.||.++++.. ..+..+. .
T Consensus 54 ~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~------w~~~~~~----~ 123 (369)
T 2hz6_A 54 PDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQ------QTLSSAF----A 123 (369)
T ss_dssp ECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC-----------------------
T ss_pred EeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEE------EEecCCC----c
Confidence 888999999999999988776654321 111 111123567888999999999999755421 1111111 2
Q ss_pred EEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecC---CEEEEEeCCCcEEEEecCCCCceeEEEEe
Q 012007 330 LAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAG---NLVFSGSADRNICLWRREESGAHSCLAVL 406 (473)
Q Consensus 330 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 406 (473)
..++|++..+++++.|+.|+.||.+++...-.... +......+..+. ..+++++.||.|+.||..++ +.+...
T Consensus 124 ~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~ 199 (369)
T 2hz6_A 124 DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY-FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQ 199 (369)
T ss_dssp ---------EEEEEEEEEEECCCSSSSSCCCEEEE-EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEE
T ss_pred ccccccCCEEEEEecCCEEEEEECCCCCEEEeEec-ccccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEe
Confidence 34566788899999999999999988755432211 111111111211 56778889999999999884 344444
Q ss_pred cCCCCcee-EEEEecCC
Q 012007 407 TGHTGPVK-CLAVEEDR 422 (473)
Q Consensus 407 ~~h~~~V~-~l~~~~~~ 422 (473)
.. ..++. ...+++++
T Consensus 200 ~~-~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 200 NY-ASPVVAFYVWQREG 215 (369)
T ss_dssp EC-SSCEEEEEECTTSS
T ss_pred cC-CCceEEEEEecCCc
Confidence 32 33443 33444444
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.06 E-value=7.3e-08 Score=98.14 Aligned_cols=288 Identities=14% Similarity=0.083 Sum_probs=160.3
Q ss_pred EecCCEEEEeeCCCcEEEeeCC--ccccccccC-c----ccEEE-EEEeCCCCEEEEEeC------CCeEEEEeCCCCCe
Q 012007 130 AASGDLLYTGSDSKNIRVWKNL--KEFSGFKSN-S----GLVKA-IIISGDSNKIFTGHQ------DGKIRIWKVSRKNA 195 (473)
Q Consensus 130 ~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h-~----~~V~~-l~~s~~~~~l~s~~~------dg~i~vwd~~~~~~ 195 (473)
..++..|++++.|+.|..+|.. +.+-.+..+ . ..+.. ..+. ++ .++.++. +|.|+.+|..+++.
T Consensus 125 a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~ 202 (677)
T 1kb0_A 125 ALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KG-KVIIGNGGAEYGVRGYITAYDAETGER 202 (677)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred eEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CC-EEEEEecccccCCCCEEEEEECCCCcE
Confidence 3357788888889999999864 333232222 1 11111 1111 33 5555553 79999999999987
Q ss_pred eeEEeeccccccceeEeecC-CCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC-----------------
Q 012007 196 SVHKRVGSLPTFKDYVKSSV-NPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK----------------- 257 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg----------------- 257 (473)
..............+..... ....... .........+.......+++++++.+++.+..++
T Consensus 203 ~W~~~~~~~~~~~~~~~~~~~~g~~~w~-~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~ 281 (677)
T 1kb0_A 203 KWRWFSVPGDPSKPFEDESMKRAARTWD-PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (677)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTSC-GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEeccCCCCcccccccccccccccccc-ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence 76655432110000000000 0000000 0000000001223334678899899999887664
Q ss_pred --CEEEEEcCCCeeeEEeecCCC---------ceeEEEEcCC----CEEEEEeCCCcEEEEeCcccCCCcceeeee----
Q 012007 258 --TLKVWRISDCKCLESINAHDD---------AINSVVAGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQ---- 318 (473)
Q Consensus 258 --~v~vwd~~~~~~~~~~~~~~~---------~v~~l~~~~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---- 318 (473)
.|..+|..+|+.+..++.... ....+....+ ..++.++.+|.|.++|.++++.........
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~ 361 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA 361 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence 499999999999888764211 1111222223 368889999999999987654311110000
Q ss_pred -eeccCCccE------------------------EEEEEccCCCEEEEeCC-----------------------------
Q 012007 319 -VLLKHENAV------------------------TALAVNQESAVVYCGSS----------------------------- 344 (473)
Q Consensus 319 -~~~~~~~~v------------------------~~l~~~~~~~~l~~~~~----------------------------- 344 (473)
.+......+ ..++++|+..++++...
T Consensus 362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 441 (677)
T 1kb0_A 362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN 441 (677)
T ss_dssp EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence 000000011 25788998888877532
Q ss_pred --------------CCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec-CC
Q 012007 345 --------------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT-GH 409 (473)
Q Consensus 345 --------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h 409 (473)
.|.|..||+.+++..-....+....-..+..++.+++.++.||.+++||..++ +.+..+. ++
T Consensus 442 ~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG---~~lw~~~~~~ 518 (677)
T 1kb0_A 442 TAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG---EKLWEAPTGT 518 (677)
T ss_dssp CCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSS
T ss_pred cccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC---ceeeeeeCCC
Confidence 27799999988765433332222222346678889999999999999999984 5555554 33
Q ss_pred CCceeEEEEecCCC
Q 012007 410 TGPVKCLAVEEDRD 423 (473)
Q Consensus 410 ~~~V~~l~~~~~~~ 423 (473)
...-.-+.+..+++
T Consensus 519 ~~~~~p~~y~~~G~ 532 (677)
T 1kb0_A 519 GVVAAPSTYMVDGR 532 (677)
T ss_dssp CCCSCCEEEEETTE
T ss_pred CcccCCEEEEeCCE
Confidence 22334566667776
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=1.5e-07 Score=88.38 Aligned_cols=226 Identities=8% Similarity=0.039 Sum_probs=134.1
Q ss_pred EEe--CCCCEEEEE-eCCCeEEEEeCCCCC--eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 168 IIS--GDSNKIFTG-HQDGKIRIWKVSRKN--ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 168 ~~s--~~~~~l~s~-~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
.++ .++++|+.. ..++.|.|+|+.+.. ......+....... .. ....-..+.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~----------------------~~-g~s~Ph~~~ 144 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKK----------------------VS-GYSRLHTVH 144 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHH----------------------HH-CEEEEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccc----------------------cc-CCCccccee
Confidence 446 778877664 457899999997542 12221110000000 00 001233466
Q ss_pred EcCCCCEEEEEeCC------CCEEEEEcCCCeeeEEeecCCC---ceeEEEEcCCC-EEEEEe-----------------
Q 012007 243 LNAEQGLLYSGSWD------KTLKVWRISDCKCLESINAHDD---AINSVVAGFDS-LVFTGS----------------- 295 (473)
Q Consensus 243 ~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~---~v~~l~~~~~~-~l~s~~----------------- 295 (473)
..|+| +++++..+ +.|.++|.++++.+..+..... .-..+.|+|++ .+++..
T Consensus 145 ~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~ 223 (462)
T 2ece_A 145 CGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK 223 (462)
T ss_dssp ECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred ECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence 77998 77766555 7899999999999998873322 23457788887 555553
Q ss_pred --CCCcEEEEeCcccCCCcceeeeeeecc--CCccEEEEEE--ccCCCEEEEeC------CCCcEEEEecCCccc-----
Q 012007 296 --ADGTVKVWRRELQGKGTKHCLAQVLLK--HENAVTALAV--NQESAVVYCGS------SDGLVNFWECEKHLS----- 358 (473)
Q Consensus 296 --~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~--~~~~~~l~~~~------~dg~i~iwd~~~~~~----- 358 (473)
.+.+|.+||+... .....+.. .......+.| +|+++++++++ .++.|.+|....+..
T Consensus 224 ~~~~d~V~v~D~~~~------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 224 DRYGNRIHFWDLRKR------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp HHSCCEEEEEETTTT------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred hccCCEEEEEECCCC------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence 3789999999732 12222222 1234455656 99999988877 456787655432110
Q ss_pred -------cccee----e-----cCcceEEEEEecCCEEEEEeC-CCcEEEEecCCCCceeEEEEecCC-----------C
Q 012007 359 -------HGGVL----R-----GHKMAVLCLAAAGNLVFSGSA-DRNICLWRREESGAHSCLAVLTGH-----------T 410 (473)
Q Consensus 359 -------~~~~~----~-----~~~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h-----------~ 410 (473)
....+ . +....-..+++||++|+++.. .+.|.+||+......+.+..+.-. .
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~ 377 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH 377 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence 00000 0 122334668899999888775 578999999754444555444321 0
Q ss_pred ---CceeEEEEecCCC
Q 012007 411 ---GPVKCLAVEEDRD 423 (473)
Q Consensus 411 ---~~V~~l~~~~~~~ 423 (473)
+.-..++++||++
T Consensus 378 ~~~ggPr~~~lSpDGk 393 (462)
T 2ece_A 378 KLTGAPQMLEISRDGR 393 (462)
T ss_dssp CCCSCCCCEEECTTSS
T ss_pred cCCCCCCEEEEcCCCC
Confidence 1257899999998
No 228
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.03 E-value=4.1e-08 Score=93.14 Aligned_cols=253 Identities=11% Similarity=0.115 Sum_probs=151.6
Q ss_pred ceeeeeeecccEEEEEecCCEEEEee----------CCCcEEEeeCCc--cccccccC-------cccEEEEEEeCCCCE
Q 012007 115 LIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNLK--EFSGFKSN-------SGLVKAIIISGDSNK 175 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~g~~l~tg~----------~dg~i~vwd~~~--~~~~~~~h-------~~~V~~l~~s~~~~~ 175 (473)
.+.++.--..+=..+++||++|+++. .++.|.++|... .+..+.-. ......++|+|||++
T Consensus 111 vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~ 190 (426)
T 3c75_H 111 ILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKN 190 (426)
T ss_dssp EEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSE
T ss_pred EEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCE
Confidence 34444332233456778899887775 367899999653 33333211 123467899999999
Q ss_pred EEEEeC--CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEE
Q 012007 176 IFTGHQ--DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYS 252 (473)
Q Consensus 176 l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s 252 (473)
|+.+.. ++.|.+.|+.+.+......+.. +....|+ ...+++
T Consensus 191 lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------------------------------------~~~~~p~g~~~~v~ 234 (426)
T 3c75_H 191 LLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------------------------------------CYHIFPASPTVFYM 234 (426)
T ss_dssp EEEEECSSSCEEEEEETTTTEEEEEEECCS------------------------------------EEEEEEEETTEEEE
T ss_pred EEEEecCCCCeEEEEECCCCeEEEEEEcCC------------------------------------ceeeccCCCcEEEE
Confidence 999874 5789999999987655443221 0112222 244555
Q ss_pred EeCCCCEEEEEcCCCeeeEE----eecCCCce-eEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC--cceeeee-eecc-
Q 012007 253 GSWDKTLKVWRISDCKCLES----INAHDDAI-NSVVAGFDS-LVFTGSADGTVKVWRRELQGKG--TKHCLAQ-VLLK- 322 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~----~~~~~~~v-~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~-~~~~- 322 (473)
.+.||.+.+.++.+++.... +.....++ ..+.+.+++ .++..+..+.|.+.|....... ....... ....
T Consensus 235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERAD 314 (426)
T ss_dssp EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGG
T ss_pred EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccc
Confidence 56666666666654444321 11111121 123456665 5555567889999997532110 0000000 0000
Q ss_pred --CCccEEEEEEccCCCEEEEeCC----------CCcEEEEecCCcccccceeecCcceEEEEEecCC-EEEEEe-CCCc
Q 012007 323 --HENAVTALAVNQESAVVYCGSS----------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-LVFSGS-ADRN 388 (473)
Q Consensus 323 --~~~~v~~l~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~-~dg~ 388 (473)
.......++++++++.+++... ++.|.++|..+.+....+..+....-..++++|+ ++++.. .++.
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence 0111123689999887777642 3579999999877666565555556677888998 888887 5899
Q ss_pred EEEEecCCCCceeEEEEe
Q 012007 389 ICLWRREESGAHSCLAVL 406 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~ 406 (473)
|.++|+.+ .+.+..+
T Consensus 395 VsVID~~t---~kvv~tI 409 (426)
T 3c75_H 395 LHIYDAAT---GEELRSV 409 (426)
T ss_dssp EEEEETTT---CCEEEEE
T ss_pred EEEEECCC---CCEEEEe
Confidence 99999998 5666665
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.00 E-value=7.6e-08 Score=98.21 Aligned_cols=239 Identities=10% Similarity=0.081 Sum_probs=142.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeec-cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVG-SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
+..|+.++.|+.|..+|..+++..-..... ....... ....++ + .+ ..++
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~-----------------------~~~sP~--v---~~-g~v~ 171 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYT-----------------------ITGAPR--V---VN-GKVV 171 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCB-----------------------CCSCCE--E---ET-TEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCcc-----------------------ccCCcE--E---EC-CEEE
Confidence 458888999999999999999876655432 1000000 001111 1 13 3444
Q ss_pred EEe------CCCCEEEEEcCCCeeeEEeecCC-------------------------------CceeEEEEcCC-CEEEE
Q 012007 252 SGS------WDKTLKVWRISDCKCLESINAHD-------------------------------DAINSVVAGFD-SLVFT 293 (473)
Q Consensus 252 s~s------~dg~v~vwd~~~~~~~~~~~~~~-------------------------------~~v~~l~~~~~-~~l~s 293 (473)
+++ .++.|+.||.++|+.+..+.... .....+.+.++ ++++.
T Consensus 172 vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~ 251 (689)
T 1yiq_A 172 IGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYI 251 (689)
T ss_dssp ECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEE
T ss_pred EEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEE
Confidence 443 36899999999999987765210 00124566665 48888
Q ss_pred EeCCCc-------------------EEEEeCcccCCCcceeeeeeeccCC-------ccEEEEEEccCCC---EEEEeCC
Q 012007 294 GSADGT-------------------VKVWRRELQGKGTKHCLAQVLLKHE-------NAVTALAVNQESA---VVYCGSS 344 (473)
Q Consensus 294 ~~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~~~~~-------~~v~~l~~~~~~~---~l~~~~~ 344 (473)
+..++. |..||.++++. .... ....|. ..+.......+|+ .++.++.
T Consensus 252 ~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~--~W~~--~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~ 327 (689)
T 1yiq_A 252 GVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY--VWHY--QTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPK 327 (689)
T ss_dssp ECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE--EEEE--ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT
T ss_pred eCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce--eEee--ecCCcccccccCCCCcEEEeeccCCcEEEEEEEECC
Confidence 877763 89999886542 1111 111121 1222222233554 7889999
Q ss_pred CCcEEEEecCCcccccceeec----------------------------------------CcceEEEEEecCCEEEEEe
Q 012007 345 DGLVNFWECEKHLSHGGVLRG----------------------------------------HKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~----------------------------------------~~~~v~~~~~~~~~l~s~~ 384 (473)
+|.++++|.++++.+...... +.-.-.+++++..+|++..
T Consensus 328 ~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~ 407 (689)
T 1yiq_A 328 NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPA 407 (689)
T ss_dssp TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEE
T ss_pred CCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEec
Confidence 999999999877553111000 0001135566666766653
Q ss_pred C---------------------------------------------CCcEEEEecCCCCceeEEEEecCCCCceeEEEEe
Q 012007 385 A---------------------------------------------DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE 419 (473)
Q Consensus 385 ~---------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~ 419 (473)
. +|.|..||+.++ +.+..+..+. ++..-.+.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~ 483 (689)
T 1yiq_A 408 HIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLS 483 (689)
T ss_dssp EECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEE
T ss_pred cccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccce
Confidence 2 377999999884 4444444332 33333555
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
..+. +++.|+.||.|+.||..+++..++.
T Consensus 484 tagg-------------lvf~gt~dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 484 TAGN-------------LVFEGSADGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp ETTT-------------EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ECCC-------------EEEEECCCCcEEEEECCCCccceee
Confidence 5555 7889999999999999999876553
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.98 E-value=9.9e-08 Score=97.15 Aligned_cols=238 Identities=9% Similarity=0.091 Sum_probs=145.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeec-cccccceeEeecCCCcceEEEeecceeeEeeccCCeeE-EEEcCCCCE
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVG-SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC-LSLNAEQGL 249 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~~~~~ 249 (473)
++..|+.++.|+.|..+|..+++........ ... ....+.. ... .+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~----------------------------~~~~~~~~p~v--~~~~ 176 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQK----------------------------GSLTITGAPRV--FKGK 176 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCC----------------------------SSCBCCSCCEE--ETTE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcC----------------------------cCcccccCcEE--ECCE
Confidence 3558888999999999999999877655432 100 0000100 001 1345
Q ss_pred EEEEeC------CCCEEEEEcCCCeeeEEeecCCCc--------------------------------eeEEEEcCCC-E
Q 012007 250 LYSGSW------DKTLKVWRISDCKCLESINAHDDA--------------------------------INSVVAGFDS-L 290 (473)
Q Consensus 250 l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~--------------------------------v~~l~~~~~~-~ 290 (473)
+++++. ++.|+.+|..+|+.+..+...... ...+.+.+++ +
T Consensus 177 v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~ 256 (677)
T 1kb0_A 177 VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNT 256 (677)
T ss_dssp EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTE
T ss_pred EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCE
Confidence 555543 689999999999998877643211 1245666654 7
Q ss_pred EEEEeCCC-------------------cEEEEeCcccCCCcceeeeeeeccCC-------ccEEEEEEccCC---CEEEE
Q 012007 291 VFTGSADG-------------------TVKVWRRELQGKGTKHCLAQVLLKHE-------NAVTALAVNQES---AVVYC 341 (473)
Q Consensus 291 l~s~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~~~~~-------~~v~~l~~~~~~---~~l~~ 341 (473)
++.+..++ .|..+|.++++. .... ....|. .....+....+| ..|+.
T Consensus 257 vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~--~W~~--~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~ 332 (677)
T 1kb0_A 257 MYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY--KWHY--QETPGDNWDYTSTQPMILADIKIAGKPRKVILH 332 (677)
T ss_dssp EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEE--ESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE
T ss_pred EEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE--EEEE--ecCCCcccccccCCCcEEEecccCCcEeeEEEE
Confidence 77776654 488888875432 1111 111121 122223333467 68999
Q ss_pred eCCCCcEEEEecCCcccccceeecC------------------------------------cceEEEEEecCCEEEEEeC
Q 012007 342 GSSDGLVNFWECEKHLSHGGVLRGH------------------------------------KMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------------~~~v~~~~~~~~~l~s~~~ 385 (473)
++.+|.|+++|.++++.+....... .-...++++++.++++...
T Consensus 333 ~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~ 412 (677)
T 1kb0_A 333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQ 412 (677)
T ss_dssp CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred ECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeCh
Confidence 9999999999998765432221110 0012356667777777543
Q ss_pred -------------------------------------------CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 386 -------------------------------------------DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 386 -------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
.|.|..||+.++ +.+..+. +..++....+...+
T Consensus 413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~-~~~~~~~g~~~~~g 488 (677)
T 1kb0_A 413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVE-HVSPWNGGTLTTAG 488 (677)
T ss_dssp ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT---EEEEEEE-ESSSCCCCEEEETT
T ss_pred hcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC---cEEeecC-CCCCCcCcceEeCC
Confidence 267999999884 4444433 23345555566666
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
. +++.++.||.+++||..+++....
T Consensus 489 ~-------------~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 489 N-------------VVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp T-------------EEEEECTTSEEEEEETTTCCEEEE
T ss_pred C-------------EEEEECCCCcEEEEECCCCceeee
Confidence 6 788889999999999999876554
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.96 E-value=1.7e-07 Score=87.96 Aligned_cols=220 Identities=14% Similarity=0.159 Sum_probs=139.6
Q ss_pred ecCCE-EEEeeCCCcEEEeeCCc------cccccc------c-CcccEEEEEEeCCCCEEEEEeCC------CeEEEEeC
Q 012007 131 ASGDL-LYTGSDSKNIRVWKNLK------EFSGFK------S-NSGLVKAIIISGDSNKIFTGHQD------GKIRIWKV 190 (473)
Q Consensus 131 ~~g~~-l~tg~~dg~i~vwd~~~------~~~~~~------~-h~~~V~~l~~s~~~~~l~s~~~d------g~i~vwd~ 190 (473)
.++++ ++.|..++.|.|+|+.. ..+.+. . ....-..+...|+| +++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 44565 45566688999999752 222221 0 11245567888999 77776655 78999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe----------------
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS---------------- 254 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s---------------- 254 (473)
.+.+.......... -...-..+.|+|+++.+++..
T Consensus 172 ~T~~v~~~~~~~~~-----------------------------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~ 222 (462)
T 2ece_A 172 YSFEPLGKWEIDRG-----------------------------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL 222 (462)
T ss_dssp TTCCEEEECCSBCT-----------------------------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred CCCeEEEEEccCCC-----------------------------CccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence 98887655543211 111223577899999999885
Q ss_pred ---CCCCEEEEEcCCCeeeEEeecCC--CceeEEEE--cCCC-EEEEEe------CCCcEEEEeCcccCCCcceeeeee-
Q 012007 255 ---WDKTLKVWRISDCKCLESINAHD--DAINSVVA--GFDS-LVFTGS------ADGTVKVWRRELQGKGTKHCLAQV- 319 (473)
Q Consensus 255 ---~dg~v~vwd~~~~~~~~~~~~~~--~~v~~l~~--~~~~-~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~- 319 (473)
.+.+|.+||+.+++.+.++.... .....+.+ +|++ ++++++ .+++|.+|..+. +. ....+.
T Consensus 223 ~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~---~~~~~vI 298 (462)
T 2ece_A 223 KDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GK---WNAEKVI 298 (462)
T ss_dssp HHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TE---EEEEEEE
T ss_pred hhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-Cc---eeEEEEE
Confidence 36899999999998888887531 23445555 8887 444444 567888776642 11 111111
Q ss_pred -ecc----------------CCccEEEEEEccCCCEEEEeCC-CCcEEEEecCCc---ccccceeec-------C-----
Q 012007 320 -LLK----------------HENAVTALAVNQESAVVYCGSS-DGLVNFWECEKH---LSHGGVLRG-------H----- 366 (473)
Q Consensus 320 -~~~----------------~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~---~~~~~~~~~-------~----- 366 (473)
+.. -......|.+++|+++|+++.. .+.|.+||+... .....+..+ |
T Consensus 299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~ 378 (462)
T 2ece_A 299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK 378 (462)
T ss_dssp EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence 000 0245788999999999888765 679999998632 122222222 0
Q ss_pred ---cceEEEEEecCCEEEEEe
Q 012007 367 ---KMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 367 ---~~~v~~~~~~~~~l~s~~ 384 (473)
.-.-..++++|++|+++.
T Consensus 379 ~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 379 LTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCCEEEEcCCCCEEEEEc
Confidence 124477889999999887
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.96 E-value=1.3e-08 Score=94.25 Aligned_cols=251 Identities=14% Similarity=0.118 Sum_probs=150.8
Q ss_pred CCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 133 GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
+..|+.++.++.|..||.. +.+..+..+...+.++...+++. |+.++.+ |..+|. +++.......
T Consensus 30 ~g~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~---------- 95 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDT---------- 95 (330)
T ss_dssp TSCEECSSTTTTTEEECTTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC----------
T ss_pred CCeEEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEEC----------
Confidence 4456777778888888822 22223333445567777777774 5555444 888885 3332211110
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEE
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV 291 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l 291 (473)
.........+. +..|+.++.++.|..+|.. ++.......+...+.++...+++.+
T Consensus 96 ----------------------~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l 150 (330)
T 3hxj_A 96 ----------------------KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTI 150 (330)
T ss_dssp ---------------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCE
T ss_pred ----------------------CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEE
Confidence 01111122222 5678888889999999988 8777777666666777777778888
Q ss_pred EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE
Q 012007 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL 371 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 371 (473)
+.++.++.|..+|.. +.. ..........+.++.+.+++.+++ ++ +.|..+| .++.... ........+.
T Consensus 151 ~vgt~~~~l~~~d~~-g~~------~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~-~~~~~~~~~~ 218 (330)
T 3hxj_A 151 YVGSNDNYLYAINPD-GTE------KWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKW-NFYAGYWTVT 218 (330)
T ss_dssp EEECTTSEEEEECTT-SCE------EEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEE-EECCSSCCCS
T ss_pred EEEcCCCEEEEECCC-CCE------eEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEE-EEccCCccee
Confidence 889999999999976 221 111222344566677777777554 44 7899999 4433321 2222223344
Q ss_pred EEEecCC-EEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEE
Q 012007 372 CLAAAGN-LVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450 (473)
Q Consensus 372 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW 450 (473)
++..+.+ .|..++.++.|..++... ..+..+......+..+.+.+++. |..++.+|.|..+
T Consensus 219 ~~~~~~~g~l~v~t~~~gl~~~~~~g----~~~~~~~~~~~~~~~~~~~~~g~--------------l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 219 RPAISEDGTIYVTSLDGHLYAINPDG----TEKWRFKTGKRIESSPVIGNTDT--------------IYFGSYDGHLYAI 280 (330)
T ss_dssp CCEECTTSCEEEEETTTEEEEECTTS----CEEEEEECSSCCCSCCEECTTSC--------------EEEECTTCEEEEE
T ss_pred ceEECCCCeEEEEcCCCeEEEECCCC----CEeEEeeCCCCccccceEcCCCe--------------EEEecCCCCEEEE
Confidence 4444533 677777788888887533 23334443344455566665554 6777788888888
Q ss_pred Ec
Q 012007 451 RV 452 (473)
Q Consensus 451 ~i 452 (473)
+.
T Consensus 281 d~ 282 (330)
T 3hxj_A 281 NP 282 (330)
T ss_dssp CT
T ss_pred CC
Confidence 85
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.93 E-value=2.2e-08 Score=93.37 Aligned_cols=235 Identities=10% Similarity=0.106 Sum_probs=143.2
Q ss_pred ccEEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 162 GLVKAIIISGDSNKIFTGH--QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
..+..|+++++|+.+++.. .++.++||.+.+++.. . .+.... ....+...+.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~---~---~p~~~~--------------------~~~~~~~~p~ 70 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI---P---FPPQSG--------------------NAIITFDTVL 70 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE---E---SCCCCS--------------------SCCCCCSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee---c---CCCccc--------------------CcccceeEee
Confidence 6789999999999888864 2343666666533211 0 010000 0012567899
Q ss_pred EEEEcCCCCEEEEEeC-----CCCEEEEEcCCCeeeEEeecC------CCceeEEEEcCC-CEE-EEEe---CCCcEEEE
Q 012007 240 CLSLNAEQGLLYSGSW-----DKTLKVWRISDCKCLESINAH------DDAINSVVAGFD-SLV-FTGS---ADGTVKVW 303 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~-----dg~v~vwd~~~~~~~~~~~~~------~~~v~~l~~~~~-~~l-~s~~---~dg~i~vw 303 (473)
.++++++++++++-.. ++.|.+||+.+++.+..+... ...+..+++.++ +.+ ++-. .++.|.+|
T Consensus 71 gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 71 GIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred EEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 9999999875555433 578999999999877766532 235688999865 554 4444 67899999
Q ss_pred eCcccCCCcceeeeeeeccCCccEE-EEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEE
Q 012007 304 RRELQGKGTKHCLAQVLLKHENAVT-ALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFS 382 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 382 (473)
|+..+. ....+..|..... ...+.+++..+.+...++.++.|.. ...-++++++++.|+.
T Consensus 151 d~~~g~------~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~-------------~~~gia~s~dg~~ly~ 211 (343)
T 2qe8_A 151 DLQTGL------AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL-------------GVNGIVLDAENEWLYL 211 (343)
T ss_dssp ETTTCC------EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC-------------CEEEEEECTTSCEEEE
T ss_pred ECCCCC------EEEEecCCCcccccccceeECCEEEEeccCCCceeceec-------------ccceeEeccCCCEEEE
Confidence 986322 1222222211100 1334456777777778888766641 1123677888998888
Q ss_pred EeCCC-cEEEEecC---CCC--cee---EEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 383 GSADR-NICLWRRE---ESG--AHS---CLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 383 ~~~dg-~i~iwd~~---~~~--~~~---~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+..++ .|..++.. ... ... .+. ..++.+....+++++++. ++++...++.|.+|+..
T Consensus 212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~-------------l~va~~~~~~V~~~d~~ 277 (343)
T 2qe8_A 212 SPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHN-------------IYVGDLAHSAIGVITSA 277 (343)
T ss_dssp EESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCC-------------EEEEEGGGTEEEEEETT
T ss_pred EeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCC-------------EEEEccCCCeEEEEECC
Confidence 87766 44444432 100 000 011 112334567899999987 88888889999999983
Q ss_pred CC
Q 012007 454 EH 455 (473)
Q Consensus 454 ~~ 455 (473)
.+
T Consensus 278 ~G 279 (343)
T 2qe8_A 278 DR 279 (343)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.91 E-value=3e-10 Score=107.19 Aligned_cols=190 Identities=12% Similarity=0.092 Sum_probs=100.3
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCC
Q 012007 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHE 324 (473)
Q Consensus 246 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 324 (473)
++..+++++.|+.|+.||..+|+.+..+.. +.+.+..+..++ .+++++.||.|+.||..+++...............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 578899999999999999999999988876 444444444455 67777899999999987543211110000000001
Q ss_pred ccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEE
Q 012007 325 NAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLA 404 (473)
Q Consensus 325 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 404 (473)
.++ +. .+..|++++.|+.|+.||.+++...-.. ..+. ...+++++..|++++.|+.|+.||..++.......
T Consensus 86 sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~-~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 86 SPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTL-SSAF--ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp CSC----C------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred Cce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEe-cCCC--cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 111 11 3456778888999999999887654322 2222 23345688899999999999999998854321111
Q ss_pred EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 405 VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 405 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
... ....++..+.. .++ .++.++.||.|+.||..+++..++
T Consensus 158 -~~~----~~~~~~~~~~~--------~~~--~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 158 -YFD----YAASLPEDDVD--------YKM--SHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp -EEE----ECCBCCCCCTT--------CCC--CEEEEETSCEEEEECTTTCCEEEE
T ss_pred -ccc----ccCccccCCcc--------ccc--eEEEECCCCEEEEEECCCCcEEEE
Confidence 111 11222333210 000 467788899999999988876544
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.90 E-value=4.5e-08 Score=91.28 Aligned_cols=256 Identities=11% Similarity=0.088 Sum_probs=154.4
Q ss_pred cceeeeeeecccEEEEEecCCEEEEee----------CCCcEEEeeCC--ccccccccC-------cccEEEEEEeCCCC
Q 012007 114 GLIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNL--KEFSGFKSN-------SGLVKAIIISGDSN 174 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g~~l~tg~----------~dg~i~vwd~~--~~~~~~~~h-------~~~V~~l~~s~~~~ 174 (473)
..+.++.-...+-..+++||++++++. .++.|.+||.. +.+..+... ......++++|||+
T Consensus 57 ~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk 136 (368)
T 1mda_H 57 VTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp EEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred eEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 445555433334467788899888886 36899999975 334444322 12456899999999
Q ss_pred EEEEEeC--CCeEEE--EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CE
Q 012007 175 KIFTGHQ--DGKIRI--WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GL 249 (473)
Q Consensus 175 ~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~ 249 (473)
+|+++.. +..|.+ +|..+ ....... . |+.+.|++ ..
T Consensus 137 ~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-------------------------------~-----~~~~~p~g~~~ 177 (368)
T 1mda_H 137 CLLFFLFGSSAAAGLSVPGASD---DQLTKSA-------------------------------S-----CFHIHPGAAAT 177 (368)
T ss_dssp CEEEEECSSSCEEEEEETTTEE---EEEEECS-------------------------------S-----CCCCEEEETTE
T ss_pred EEEEEccCCCCeEEEEEEchhh---ceEEECC-------------------------------C-----ceEEccCCCeE
Confidence 9999875 457888 88866 1111110 0 01122332 34
Q ss_pred EEEEeCCCCEEEEEcCC-----CeeeE----EeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeee
Q 012007 250 LYSGSWDKTLKVWRISD-----CKCLE----SINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 250 l~s~s~dg~v~vwd~~~-----~~~~~----~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
+++.+.|+.+.+.|+.+ ++.+. .+.....+. ....++.++..+. +.|.+.|+..... ......
T Consensus 178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~----~v~~~~ 249 (368)
T 1mda_H 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA----TMKAAI 249 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC----EEECCC
T ss_pred EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc----eEEEEE
Confidence 45566788888888876 44321 111122333 2444455555555 9999999853211 011100
Q ss_pred c-------cCC---ccEEEEEEccCCCEEEEeCC---------CCcEEEEecCCcccccceeecCcceEEEEEecCC-EE
Q 012007 321 L-------KHE---NAVTALAVNQESAVVYCGSS---------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-LV 380 (473)
Q Consensus 321 ~-------~~~---~~v~~l~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~l 380 (473)
. .+. .....++++|+++.++++.. ++.+.++|+.+.+....+..+....-+.++++|+ ++
T Consensus 250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~ 329 (368)
T 1mda_H 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN 329 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEE
T ss_pred EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEE
Confidence 0 011 11122689999988887533 2356699999876665555555555577788887 56
Q ss_pred EEEe-CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 381 FSGS-ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 381 ~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
++.. .++.|.++|+.+ .+.+..+..... ...+++.+
T Consensus 330 va~~~~~~~VsVID~~t---~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 330 YANSAGTEVLDIYDAAS---DQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEEETTTTEEEEEESSS---CEEEEECCCCSC-CCEEECCC
T ss_pred EEccCCCCeEEEEECCC---CcEEEEEECCCC-CCEEEeec
Confidence 6666 599999999999 677777765443 45666654
No 236
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.90 E-value=3.6e-06 Score=75.23 Aligned_cols=219 Identities=5% Similarity=0.019 Sum_probs=134.1
Q ss_pred ccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 162 GLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
..+..++|++++..|+.+. .++.|.+++........... ........
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--------------------------------~~~~~p~~ 83 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--------------------------------QDLGSPEG 83 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--------------------------------TTCCCEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--------------------------------CCCCCccE
Confidence 4578999999766666554 46899999987654211110 02245678
Q ss_pred EEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CEEEEEeC---CCcEEEEeCcccCCCccee
Q 012007 241 LSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA---DGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 241 l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~---dg~i~vwd~~~~~~~~~~~ 315 (473)
+++++++..|+.+. ..+.|.++++..................+++.++ +.|+.+.. .+.|..+++.... ..
T Consensus 84 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~----~~ 159 (267)
T 1npe_A 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN----RR 159 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC----CE
T ss_pred EEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC----cE
Confidence 99999766666654 4678999998643322222222245788999984 66655554 3678888875211 11
Q ss_pred eeeeeccCCccEEEEEEccCCCEEE-EeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEe-CCCcEEEEe
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVY-CGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGS-ADRNICLWR 393 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~i~iwd 393 (473)
. ...........+++++++..|+ +-...+.|.++|....... ....+. .....++.++..|+.+. ..+.|.++|
T Consensus 160 ~--~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~~-~~P~gi~~d~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 I--LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVLEGL-QYPFAVTSYGKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp E--EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEEECC-CSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred E--EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-EEecCC-CCceEEEEeCCEEEEEECCCCeEEEEe
Confidence 1 1112234578999999876554 4555688999998753221 222221 22245566666666655 558899999
Q ss_pred cCCCCceeEEEEecCCC-CceeEEEEecCCC
Q 012007 394 REESGAHSCLAVLTGHT-GPVKCLAVEEDRD 423 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~ 423 (473)
..+ .+.+..+.... ....+|++.|++.
T Consensus 236 ~~~---g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 236 LAI---SKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTT---TEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCC---CCceEEEccccccccceeeecCccC
Confidence 887 35555554322 2467888888864
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.86 E-value=1.2e-06 Score=82.77 Aligned_cols=234 Identities=12% Similarity=0.102 Sum_probs=140.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
+..|+.++.++.|..+|..+++.............. ......+.+. ...++..+++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~-----------------------~~~~~~~~~~-~~~~~~~v~v 108 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWF-----------------------SKEPALLSGG-VTVSGGHVYI 108 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CC-----------------------SCCCCCEEEE-EEEETTEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccc-----------------------cccCcccccC-ceEeCCEEEE
Confidence 458888888999999999988866544432100000 0001122111 1124567888
Q ss_pred EeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccE-----
Q 012007 253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAV----- 327 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v----- 327 (473)
++.++.|..+|..+++.+............... .++.++.++.++.|..+|.+++... ... .. ...+
T Consensus 109 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~--W~~----~~-~~~~~~~~~ 180 (376)
T 3q7m_A 109 GSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVK--WTV----NL-DMPSLSLRG 180 (376)
T ss_dssp EETTSEEEEEETTTCCEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEE--EEE----EC-CC-----CC
T ss_pred EcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEE--EEE----eC-CCCceeecC
Confidence 999999999999999988777654332222222 2568888999999999998754321 111 10 0111
Q ss_pred -EEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcce---------E-EEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 328 -TALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMA---------V-LCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 328 -~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
...... +..++++..++.|..+|..++...-......... + ......+..++.++.++.+..+|..+
T Consensus 181 ~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t 258 (376)
T 3q7m_A 181 ESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS 258 (376)
T ss_dssp CCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT
T ss_pred CCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC
Confidence 111222 4567888889999999998765432221111000 0 11122467888888899999999988
Q ss_pred CCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 397 SGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 397 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+ +.+..... .....+... +. .|+.++.++.|..+|..+++..++
T Consensus 259 G---~~~w~~~~--~~~~~~~~~--~~-------------~l~~~~~~g~l~~~d~~tG~~~w~ 302 (376)
T 3q7m_A 259 G---QIMWKREL--GSVNDFIVD--GN-------------RIYLVDQNDRVMALTIDGGVTLWT 302 (376)
T ss_dssp C---CEEEEECC--CCEEEEEEE--TT-------------EEEEEETTCCEEEEETTTCCEEEE
T ss_pred C---cEEeeccC--CCCCCceEE--CC-------------EEEEEcCCCeEEEEECCCCcEEEe
Confidence 4 33333332 234444443 23 577788899999999988875543
No 238
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.82 E-value=1.6e-05 Score=82.82 Aligned_cols=281 Identities=10% Similarity=0.176 Sum_probs=168.0
Q ss_pred ccEEEEEec-CCEEEEeeCCCcEEEeeCCc-ccccccc-------CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q 012007 124 GHIYSLAAS-GDLLYTGSDSKNIRVWKNLK-EFSGFKS-------NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 124 ~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~-~~~~~~~-------h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
..|.++..| ...|..|+.++-|..|+... .+..+.. ....|.++...++|+ |..|+.++-|..|+..++.
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~ 388 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQR 388 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCC
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCc
Confidence 458888877 33567788777788887542 2222211 245699999988885 5557777779999987665
Q ss_pred eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 195 ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
..........+. ..-....|.++...+++..|..|+.++-|.+||..+++......
T Consensus 389 ~~~~~~~~~~~~------------------------~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~ 444 (795)
T 4a2l_A 389 FTSYTLQEDESA------------------------RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ 444 (795)
T ss_dssp EEEECCC------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT
T ss_pred EEEEecCCCCcc------------------------cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec
Confidence 322111000000 00024578999988888867888887789999988776443221
Q ss_pred ----cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeee----ccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 275 ----AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVL----LKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 275 ----~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
.....|.++...+++.|..|+. +-|.+||..... ....... .-....|.++...+++.+.+... +
T Consensus 445 ~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~ 517 (795)
T 4a2l_A 445 RNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRS----FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--E 517 (795)
T ss_dssp TTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTE----EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--S
T ss_pred CCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCe----EEEccccccccccCCceEEEEEECCCCCEEEEeC--C
Confidence 2345788998888887777777 558888875321 1111100 11236789999999888766554 4
Q ss_pred cEEEEecCCcccccc----eeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCC-CCceeEEEEe
Q 012007 347 LVNFWECEKHLSHGG----VLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGH-TGPVKCLAVE 419 (473)
Q Consensus 347 ~i~iwd~~~~~~~~~----~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~~ 419 (473)
-|..||..+...... ........+.++..+ |. |..|+.. .|..||..+. .........+- ...|.++...
T Consensus 518 Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~~-Gl~~~d~~~~-~~~~~~~~~gl~~~~i~~i~~d 594 (795)
T 4a2l_A 518 GLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGI-IWVGTRE-GFYCFNEKDK-QIKRYNTTNGLPNNVVYGILED 594 (795)
T ss_dssp CEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSC-EEEEESS-CEEEEETTTT-EEEEECGGGTCSCSCEEEEEEC
T ss_pred ceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCC-EEEEeCC-CceeECCCCC-cEEEeCCCCCCchhheEEEEEC
Confidence 588888765432000 001133467777765 44 4555545 5888988762 11111111221 3468888888
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+++. +.+++ . +-|..|+...
T Consensus 595 ~~g~-------------lWi~t-~-~Gl~~~~~~~ 614 (795)
T 4a2l_A 595 SFGR-------------LWLST-N-RGISCFNPET 614 (795)
T ss_dssp TTSC-------------EEEEE-T-TEEEEEETTT
T ss_pred CCCC-------------EEEEc-C-CceEEEcCCC
Confidence 8876 44444 3 3466677654
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.82 E-value=3.4e-05 Score=80.44 Aligned_cols=282 Identities=12% Similarity=0.202 Sum_probs=168.5
Q ss_pred EEEEEec-CCEEEEeeCCCcEEEeeCCc-ccccc--ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEee
Q 012007 126 IYSLAAS-GDLLYTGSDSKNIRVWKNLK-EFSGF--KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRV 201 (473)
Q Consensus 126 V~~~~~~-g~~l~tg~~dg~i~vwd~~~-~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 201 (473)
|.++..+ ...|..|+.++-|..|+... .+..+ ..+...|.+|...+++. |..|+.++-|.+||..+++.......
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~ 253 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHS 253 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecC
Confidence 7777664 44555577655688888542 22222 12346789998888775 44455444488899876543221110
Q ss_pred ccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-------
Q 012007 202 GSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN------- 274 (473)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~------- 274 (473)
...+.. -....|.++...++|. |..|+.+ -|.+||..+++......
T Consensus 254 ~~~~~~-------------------------l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~ 306 (795)
T 4a2l_A 254 PSNPKS-------------------------ISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGS 306 (795)
T ss_dssp TTCTTS-------------------------CSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTS
T ss_pred CCCccc-------------------------cCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCC
Confidence 000000 0245689999988876 4455555 58999988776543321
Q ss_pred cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee---eccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV---LLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
.....|.++...+++.|..|+.++-|..|+...... ...... ..-....|.++...++|.+. .|+.++-|..|
T Consensus 307 l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~---~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~ 382 (795)
T 4a2l_A 307 LSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF---KNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLY 382 (795)
T ss_dssp CSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSS---EEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEE
T ss_pred CCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccc---eEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEE
Confidence 123579999999999889999988999998753211 000000 01124569999998888744 57777779999
Q ss_pred ecCCcccccceee-------cCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEec--CCCCceeEEEEec
Q 012007 352 ECEKHLSHGGVLR-------GHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLT--GHTGPVKCLAVEE 420 (473)
Q Consensus 352 d~~~~~~~~~~~~-------~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~~~ 420 (473)
|..+......... -....|.++..+ +++|..|+.++.|.+||..++. ...+.... .....|.++...+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~-~~~~~~~~~~l~~~~v~~i~~d~ 461 (795)
T 4a2l_A 383 NPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ-VENFNQRNSQLVNENVYAILPDG 461 (795)
T ss_dssp CTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC-EEEECTTTSCCSCSCEEEEEECS
T ss_pred cCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc-EEEeecCCCCcCCCeeEEEEECC
Confidence 9775322111000 113457777654 5558888887889999988732 11111000 1345788998888
Q ss_pred CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 421 DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
++. |..|+.+ .|.+|+...+
T Consensus 462 ~g~--------------lwigt~~-Gl~~~~~~~~ 481 (795)
T 4a2l_A 462 EGN--------------LWLGTLS-ALVRFNPEQR 481 (795)
T ss_dssp SSC--------------EEEEESS-CEEEEETTTT
T ss_pred CCC--------------EEEEecC-ceeEEeCCCC
Confidence 776 3444444 4888887653
No 240
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.80 E-value=1.8e-06 Score=79.61 Aligned_cols=256 Identities=13% Similarity=0.060 Sum_probs=138.4
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
...+++|.+++++++++..++.|..|+..++............. .. ..... ...........+..++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~----~~~g~--------~~~~~~~~~~~p~gi~ 86 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWN-KA----FCENS--------TDAEKRPLCGRTYDIS 86 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCC-HH----HHTTC--------CCGGGHHHHCCEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEeccccccc-cc----ccccc--------cchhccccCCCCceEE
Confidence 45678899999878888889999999887654322111000000 00 00000 0000000123577899
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec-----CCCceeEEEEcC-CCEEEEEeC------------------CC
Q 012007 243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESINA-----HDDAINSVVAGF-DSLVFTGSA------------------DG 298 (473)
Q Consensus 243 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-----~~~~v~~l~~~~-~~~l~s~~~------------------dg 298 (473)
+.++...|+++...+.|..+|..+++. ..+.. .....+.+++.+ ++.++.+.. ++
T Consensus 87 ~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 87 YNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp EETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred EcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence 997444566666556688888765532 22211 113467889998 885554432 25
Q ss_pred cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCccccc-ceeecCc-ceEEEEEe
Q 012007 299 TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHG-GVLRGHK-MAVLCLAA 375 (473)
Q Consensus 299 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~-~~~~~~~-~~v~~~~~ 375 (473)
.|..||...+. .. ...........|++++++++|+.+ ..++.|.+|++.....-. ..+.... ..-+++..
T Consensus 166 ~v~~~d~~~~~---~~----~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~ 238 (322)
T 2fp8_A 166 RLIKYDPSTKE---TT----LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNA 238 (322)
T ss_dssp EEEEEETTTTE---EE----EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEEEEECT
T ss_pred eEEEEeCCCCE---EE----EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCCeEECC
Confidence 67777764221 01 111111234679999999866555 566899999987522110 1111111 12244556
Q ss_pred cCCEEEEEeC----------CCcEEEEecCCCCceeEEEEecCC----CCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 376 AGNLVFSGSA----------DRNICLWRREESGAHSCLAVLTGH----TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 376 ~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
+|++.++... .+.|..+|... +.+..+... ...++++++. ++. ++++.
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G----~~~~~~~~~~g~~~~~~~~~~~~-~g~-------------L~v~~ 300 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEFG----NILEVIPLPPPFAGEHFEQIQEH-DGL-------------LYIGT 300 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTTS----CEEEEEECCTTTTTSCCCEEEEE-TTE-------------EEEEC
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCCC----CEEEEEECCCCCccccceEEEEe-CCE-------------EEEee
Confidence 6876666544 45677787643 334333322 2356777763 444 66666
Q ss_pred eCCCcEEEEEcCCCCC
Q 012007 442 SLDKSVKVWRVSEHAP 457 (473)
Q Consensus 442 s~Dg~v~iW~i~~~~~ 457 (473)
...+.|.++++.....
T Consensus 301 ~~~~~i~~~~~~~~~~ 316 (322)
T 2fp8_A 301 LFHGSVGILVYDKKGN 316 (322)
T ss_dssp SSCSEEEEEEC-----
T ss_pred cCCCceEEEecccccC
Confidence 6788999999875443
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.78 E-value=2.3e-06 Score=75.48 Aligned_cols=200 Identities=8% Similarity=-0.003 Sum_probs=127.7
Q ss_pred eccC--CeeEEEEcCCCCEEEEEe-C--CCCEEEEEcCCCeeeEEeecCCC-ceeEEEEcCCCEEEEEeCCCcEEEEeCc
Q 012007 233 RHYD--AVSCLSLNAEQGLLYSGS-W--DKTLKVWRISDCKCLESINAHDD-AINSVVAGFDSLVFTGSADGTVKVWRRE 306 (473)
Q Consensus 233 ~~~~--~v~~l~~~~~~~~l~s~s-~--dg~v~vwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~l~s~~~dg~i~vwd~~ 306 (473)
.|.. ....+.|++++ .|+.++ . ++.|.++|+.+++.+..+..... ....+++..+.+.++.-.++.+.++|..
T Consensus 16 p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 16 PHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp ECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETT
T ss_pred ECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECC
Confidence 3543 35799999986 555554 2 57899999999999988763222 2345666544455556678999999986
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc-c---eEEEEEe-cCCEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK-M---AVLCLAA-AGNLVF 381 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~---~v~~~~~-~~~~l~ 381 (473)
+.. . ...+...... ...+.++++.++++..++.|.++|..+......+..+.. . ....+.+ ++.+.+
T Consensus 95 t~~-----v-~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyv 166 (266)
T 2iwa_A 95 TLS-----N-IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWA 166 (266)
T ss_dssp TTE-----E-EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEE
T ss_pred CCc-----E-EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEE
Confidence 322 1 2222111111 233556777777777789999999987654443332211 1 1223333 564444
Q ss_pred EEeCCCcEEEEecCCCCceeEEEEecCC-------------CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEE
Q 012007 382 SGSADRNICLWRREESGAHSCLAVLTGH-------------TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVK 448 (473)
Q Consensus 382 s~~~dg~i~iwd~~~~~~~~~~~~~~~h-------------~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~ 448 (473)
....++.|.+.|..++ +.+..+.-. ....+.|+|+|+++. +++++...+.|.
T Consensus 167 n~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~------------lfVTgk~~~~v~ 231 (266)
T 2iwa_A 167 NIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR------------IFVTGKLWPKLF 231 (266)
T ss_dssp EETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE------------EEEEETTCSEEE
T ss_pred ecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCE------------EEEECCCCCeEE
Confidence 4446789999999984 444444321 135689999999874 788888899999
Q ss_pred EEEcCCCC
Q 012007 449 VWRVSEHA 456 (473)
Q Consensus 449 iW~i~~~~ 456 (473)
+-++....
T Consensus 232 ~i~l~~~~ 239 (266)
T 2iwa_A 232 EIKLHLVR 239 (266)
T ss_dssp EEEEEECC
T ss_pred EEEEeccc
Confidence 99987754
No 242
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.70 E-value=9.1e-07 Score=90.04 Aligned_cols=267 Identities=11% Similarity=0.054 Sum_probs=143.4
Q ss_pred EEEe-cCCEEEEeeCCC-----------cEEEeeCCcc----cccc-ccCcccEEEEEEeCCCCEEEEEeC-CCeEEEEe
Q 012007 128 SLAA-SGDLLYTGSDSK-----------NIRVWKNLKE----FSGF-KSNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWK 189 (473)
Q Consensus 128 ~~~~-~g~~l~tg~~dg-----------~i~vwd~~~~----~~~~-~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd 189 (473)
++.+ +|++++.|+.+. .+.+||.... +..+ ..+.....++++..++++++.|+. +..+.+||
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd 271 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD 271 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEec
Confidence 4555 788888887643 5788886522 1112 113334456778889999999884 45799999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CC-----CCEEEEE
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WD-----KTLKVWR 263 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~d-----g~v~vwd 263 (473)
..+...... ...+ ....-.+++..+++++++.|+ .+ ..+.+||
T Consensus 272 ~~t~~W~~~---~~~~----------------------------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 272 SSSDSWIPG---PDMQ----------------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp GGGTEEEEC---CCCS----------------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred CcCCceeEC---CCCC----------------------------ccccccceEEecCCeEEEEeCcccCCcccccceEeC
Confidence 876643221 1111 111223455667889999988 44 5699999
Q ss_pred cCCCeeeEEe-----ecCCCceeEEEEcCCC-EEEEEeCC---------CcEEEEeCcccCCCcceeeeeeecc------
Q 012007 264 ISDCKCLESI-----NAHDDAINSVVAGFDS-LVFTGSAD---------GTVKVWRRELQGKGTKHCLAQVLLK------ 322 (473)
Q Consensus 264 ~~~~~~~~~~-----~~~~~~v~~l~~~~~~-~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~------ 322 (473)
..+.+-...- ......-.+ .+..++ .++.|+.+ ..+..||.....- .........
T Consensus 321 ~~t~~W~~~~~~~~~p~~~~~~~~-~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w---~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 321 PSSKTWTSLPNAKVNPMLTADKQG-LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD---VKSAGKRQSNRGVAP 396 (656)
T ss_dssp TTTTEEEEETTSCSGGGCCCCTTG-GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE---EEEEEECEETTEECC
T ss_pred CCCCcceeCCCccccccccccccc-eeecCCceEEEECCCCcEEEecCccceeeeecCCcce---eecCCccccccccCC
Confidence 9876543220 000000000 111222 33444444 3567788764221 111111100
Q ss_pred CCccEEEEEEcc-CCCEEEEeCCCC-----------cEEEEecCCcccccc---eee-cCcceEEEEEecCCEEEEEeCC
Q 012007 323 HENAVTALAVNQ-ESAVVYCGSSDG-----------LVNFWECEKHLSHGG---VLR-GHKMAVLCLAAAGNLVFSGSAD 386 (473)
Q Consensus 323 ~~~~v~~l~~~~-~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~---~~~-~~~~~v~~~~~~~~~l~s~~~d 386 (473)
....-.++.|.. +++++++|+.++ .|.+||..+..-... .+. .......++.+++++++.|+.+
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 111234455543 678888887543 677888765322110 111 1112223444689999999865
Q ss_pred -----------CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC
Q 012007 387 -----------RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 387 -----------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~ 443 (473)
..+.+||..+ ..+..+..+........+..+.++++ +++.||.
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t-~~W~~~~~~~~~R~~hs~a~ll~dg~-------------v~v~GG~ 530 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQ-DTFYKQNPNSIVRVYHSISLLLPDGR-------------VFNGGGG 530 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGG-TEEEECCCCSSCCCTTEEEEECTTSC-------------EEEEECC
T ss_pred cCcCcCCCCcccceEEEcCCC-CceeecCCCCCccccccHhhcCCCcE-------------EEecCCC
Confidence 4689999877 33443333322222233455668887 8888885
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.68 E-value=4.2e-06 Score=81.50 Aligned_cols=216 Identities=10% Similarity=0.121 Sum_probs=135.9
Q ss_pred CCCEEEEEeC-CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE-c-CCCC
Q 012007 172 DSNKIFTGHQ-DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL-N-AEQG 248 (473)
Q Consensus 172 ~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~-~~~~ 248 (473)
||++|+.+.. ++.|.+.|+.+.+......+. .......+++ . |+++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-------------------------------~g~~phg~~~~~~p~~~ 148 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP-------------------------------NAKGIHGLRPQKWPRSN 148 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECS-------------------------------SCCSEEEEEECCSSBCS
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-------------------------------CCCCCcceeeeecCCCc
Confidence 8888888766 457999999998765544332 2344667777 4 8999
Q ss_pred EEEEEe------------------CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCC-----------
Q 012007 249 LLYSGS------------------WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADG----------- 298 (473)
Q Consensus 249 ~l~s~s------------------~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg----------- 298 (473)
++++++ .++.+.++|..+.+.+..+.... ....+++++++ ++++.+.+.
T Consensus 149 ~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~ 227 (595)
T 1fwx_A 149 YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA 227 (595)
T ss_dssp EEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC
T ss_pred EEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccc
Confidence 998885 24579999999999888887433 34667788887 666655442
Q ss_pred ---------------------------cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEE
Q 012007 299 ---------------------------TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNF 350 (473)
Q Consensus 299 ---------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~i 350 (473)
.|.+.|.+... .......+ .-.....++.++|||+++++++ .+..|.+
T Consensus 228 ~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~---~~~~~~~I-pvg~~PhGv~~sPDGk~v~V~~~~s~~VsV 303 (595)
T 1fwx_A 228 AEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA---SSLFTRYI-PIANNPHGCNMAPDKKHLCVAGKLSPTVTV 303 (595)
T ss_dssp CSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG---CCSSEEEE-EEESSCCCEEECTTSSEEEEECTTSSBEEE
T ss_pred cccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC---CceeEEEE-ecCCCceEEEEcCCCCEEEEeCCCCCeEEE
Confidence 24444443210 00001111 1122446789999999876655 5789999
Q ss_pred EecCCcc------------cccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCC-------CceeEEEEecCCCC
Q 012007 351 WECEKHL------------SHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREES-------GAHSCLAVLTGHTG 411 (473)
Q Consensus 351 wd~~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~h~~ 411 (473)
+|+.+.. .......+-.-.-+.|+++|...++...|+.|.+||+... ...+.+..+..|-.
T Consensus 304 id~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq 383 (595)
T 1fwx_A 304 LDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ 383 (595)
T ss_dssp EEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC
T ss_pred EECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc
Confidence 9998642 1112233334445678888955556678999999998751 12356666666543
Q ss_pred ce-----eEEEEecCCC
Q 012007 412 PV-----KCLAVEEDRD 423 (473)
Q Consensus 412 ~V-----~~l~~~~~~~ 423 (473)
+- .++.++||++
T Consensus 384 pGh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 384 PGHLKTVMGETLDATND 400 (595)
T ss_dssp EEEEEETTTTSTTCCSS
T ss_pred cccceeccceEeCCCCC
Confidence 32 2223456665
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.67 E-value=1.5e-05 Score=77.74 Aligned_cols=270 Identities=12% Similarity=0.008 Sum_probs=148.5
Q ss_pred EEEEe-----cCCEEEEeeC-CCcEEEeeCCc--cccccc-cCcccEEEEEE-e-CCCCEEEEEe---------------
Q 012007 127 YSLAA-----SGDLLYTGSD-SKNIRVWKNLK--EFSGFK-SNSGLVKAIII-S-GDSNKIFTGH--------------- 180 (473)
Q Consensus 127 ~~~~~-----~g~~l~tg~~-dg~i~vwd~~~--~~~~~~-~h~~~V~~l~~-s-~~~~~l~s~~--------------- 180 (473)
..+++ ||++|+.... ++.|.+.|+.. ....+. ........+++ + |++.++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 55665 7888777765 55688988663 233222 12345788888 5 9999999885
Q ss_pred ---CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceE-EEeecceeeEee-----ccCCeeEE------EEcC
Q 012007 181 ---QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYV-EVRRNRSVLKIR-----HYDAVSCL------SLNA 245 (473)
Q Consensus 181 ---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~v~~l------~~~~ 245 (473)
.++.+.+.|.++.+...+..+...+.. +....+..... ..........+. -.+.|.-+ .+.+
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~---~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVLVSGNLDN---CDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEEESSCCCC---EEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred ccccCceEEEEECCCCeEEEEEEeCCCccc---eEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 245789999998877666665432211 11111111000 000000000000 00000000 0122
Q ss_pred CCCEEEEEeCCCCEEEEEcCC--Cee-eEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccC-----CC-cce
Q 012007 246 EQGLLYSGSWDKTLKVWRISD--CKC-LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQG-----KG-TKH 314 (473)
Q Consensus 246 ~~~~l~s~s~dg~v~vwd~~~--~~~-~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~-----~~-~~~ 314 (473)
+|+++.. +.|.|.|..+ ++. +..+.. .....++.++||+ .++++..+.+|.++|+.... +. ...
T Consensus 247 ~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 247 AGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp HTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred CCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 3333322 3588888887 544 455543 2356788999999 45566678999999997321 00 001
Q ss_pred eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc---------ccccceeecCcceE-E------EEEecCC
Q 012007 315 CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH---------LSHGGVLRGHKMAV-L------CLAAAGN 378 (473)
Q Consensus 315 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~v-~------~~~~~~~ 378 (473)
..... ..-......++|+++|....+...|+.|.+||+.+. ......+.-|-.+- . .+++||+
T Consensus 322 ~v~~~-v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 322 AVVAE-PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND 400 (595)
T ss_dssp GEEEC-CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS
T ss_pred ceEEE-cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC
Confidence 11112 223356788999999955556778999999998762 12222333332211 2 2357899
Q ss_pred EEEEEeC---CCc----------EEEEecCCCCceeEEEEe
Q 012007 379 LVFSGSA---DRN----------ICLWRREESGAHSCLAVL 406 (473)
Q Consensus 379 ~l~s~~~---dg~----------i~iwd~~~~~~~~~~~~~ 406 (473)
+|+++.. |+. -.++|+.. +..+++...
T Consensus 401 ~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~-~~m~lv~d~ 440 (595)
T 1fwx_A 401 WLVCLSKFSKDRFLNVGPLKPENDQLIDISG-DKMVLVHDG 440 (595)
T ss_dssp EEEEEESCCTTSSCCCCSSCCEEEEEEECSS-SSCEEEEEE
T ss_pred EEEEcCCCCccccccCCCCCCCcceEEEcCC-CcEEEEEEE
Confidence 9998753 432 28899954 344455443
No 245
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=5.8e-05 Score=78.51 Aligned_cols=280 Identities=9% Similarity=0.074 Sum_probs=165.3
Q ss_pred ccEEEEEec-CCEEEEeeCCCcEEEeeCCcc-cccc---------------ccCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 124 GHIYSLAAS-GDLLYTGSDSKNIRVWKNLKE-FSGF---------------KSNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 124 ~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~~-~~~~---------------~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
..|.++..+ ...|..|+..+-|.++|.... +..+ ......|.+|....+|. |..|..++-|.
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~ 336 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN 336 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence 458888876 446777777556778875422 1111 11346799999988885 66677677788
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
.++................... .-....|.++...+++. |..|+.++-|..||..+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~-----------------------~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 392 (781)
T 3v9f_A 337 FISNAPPTFHTWSYSPTQMNES-----------------------SLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGK 392 (781)
T ss_dssp EECSSCCSCEEEC----CCCSS-----------------------CCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTE
T ss_pred EeCCCCCcceeeccCccccccC-----------------------CCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCC
Confidence 8987765432211100000000 00345688998887765 56677667799999865
Q ss_pred CeeeEEe---ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeee--ccCCccEEEEEEccCCCEEEE
Q 012007 267 CKCLESI---NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVL--LKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 267 ~~~~~~~---~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~ 341 (473)
++..... ......|.++...+++.|..|+.++-|..+|...+. ..... ......|.++...+++.+.+
T Consensus 393 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~------~~~~~~~~~~~~~v~~i~~d~~g~lwi- 465 (781)
T 3v9f_A 393 RVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK------FQIIELEKNELLDVRVFYEDKNKKIWI- 465 (781)
T ss_dssp EEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE------EEECCSTTTCCCCEEEEEECTTSEEEE-
T ss_pred CeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc------EEEeccCCCCCCeEEEEEECCCCCEEE-
Confidence 5432211 123467889988888888888887888899875321 11111 12346789999888877554
Q ss_pred eCCCCcEEEEecCCcccccceeecC-----cceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecC----CCC
Q 012007 342 GSSDGLVNFWECEKHLSHGGVLRGH-----KMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTG----HTG 411 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~ 411 (473)
|+. +-|..||..+.... ...... ...+.++..+ ...|..|+.++-|..||..+. . +..+.. ...
T Consensus 466 gt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~---~-~~~~~~~~~l~~~ 539 (781)
T 3v9f_A 466 GTH-AGVFVIDLASKKVI-HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQ---L-VRKFNQYEGFCSN 539 (781)
T ss_dssp EET-TEEEEEESSSSSCC-EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCC---E-EEEECTTTTCSCS
T ss_pred EEC-CceEEEeCCCCeEE-ecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCC---e-EEEccCCCCCCCC
Confidence 444 45888987754321 111111 3467777665 334556665455888887662 2 222221 234
Q ss_pred ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 412 PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 412 ~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.|.++...+++. +. .|+.+|-|..|+....
T Consensus 540 ~i~~i~~d~~g~-------------lW-i~T~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 540 TINQIYRSSKGQ-------------MW-LATGEGLVCFPSARNF 569 (781)
T ss_dssp CEEEEEECTTSC-------------EE-EEETTEEEEESCTTTC
T ss_pred eeEEEEECCCCC-------------EE-EEECCCceEEECCCCC
Confidence 688888888876 34 3444665477776544
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.66 E-value=9.3e-06 Score=82.54 Aligned_cols=267 Identities=15% Similarity=0.156 Sum_probs=146.3
Q ss_pred cCCEEEEeeCCCcEEEeeCC--ccccccccC----cccEEE-EEEeCCCCEEEEEeC------CCeEEEEeCCCCCeeeE
Q 012007 132 SGDLLYTGSDSKNIRVWKNL--KEFSGFKSN----SGLVKA-IIISGDSNKIFTGHQ------DGKIRIWKVSRKNASVH 198 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h----~~~V~~-l~~s~~~~~l~s~~~------dg~i~vwd~~~~~~~~~ 198 (473)
.+..++.++.|+.|..+|.. +.+-.+... ...+.+ -.+. ++ .++.+.. +|.|..+|..+++..-.
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 45678888888999999854 222222111 011111 1111 34 5555543 58999999999988766
Q ss_pred Eeecc-ccccc---eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC-----------------
Q 012007 199 KRVGS-LPTFK---DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK----------------- 257 (473)
Q Consensus 199 ~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg----------------- 257 (473)
..... .+... ..+..... .. .........++......++++++..+++.+..++
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~---~~--~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAK---TW--QGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHT---TC--CSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred ecccCCCCCccccccccccccc---cC--CccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 55321 11000 00000000 00 0000000001223334578888888999888766
Q ss_pred --CEEEEEcCCCeeeEEeec--CC-------CceeEEEEcCCC----EEEEEeCCCcEEEEeCcccCCCcceeee-----
Q 012007 258 --TLKVWRISDCKCLESINA--HD-------DAINSVVAGFDS----LVFTGSADGTVKVWRRELQGKGTKHCLA----- 317 (473)
Q Consensus 258 --~v~vwd~~~~~~~~~~~~--~~-------~~v~~l~~~~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~----- 317 (473)
.|..+|..+|+.+..++. |. .+.....+..++ .++.++.+|.+.++|.++++........
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 348 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence 399999999999888764 22 122222222244 5888999999999998765421000000
Q ss_pred eeec-cCCcc------------------------EEEEEEccCCCEEEEe------------------------------
Q 012007 318 QVLL-KHENA------------------------VTALAVNQESAVVYCG------------------------------ 342 (473)
Q Consensus 318 ~~~~-~~~~~------------------------v~~l~~~~~~~~l~~~------------------------------ 342 (473)
..+. ....+ -..++++|+..++++.
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 0000 00000 0126777776666541
Q ss_pred ------CCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 343 ------SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 343 ------~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
..+|.|..||+.+++..-....+.......+...+.+++.++.|+.|+.||..++ +.+..+..
T Consensus 429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG---~~l~~~~~ 497 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG---EALWQFEA 497 (668)
T ss_dssp CCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEEC
T ss_pred CCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcC---hhheEecC
Confidence 1347899999988765433322222222356667899999999999999999984 55555443
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.63 E-value=1.7e-05 Score=72.86 Aligned_cols=231 Identities=10% Similarity=0.017 Sum_probs=132.0
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCc-ccccccc--------------------CcccEEEEEEeC-CCCEEEEEeCCCeEE
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLK-EFSGFKS--------------------NSGLVKAIIISG-DSNKIFTGHQDGKIR 186 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~-~~~~~~~--------------------h~~~V~~l~~s~-~~~~l~s~~~dg~i~ 186 (473)
+.++|++++++..++.|..|+... .+..+.. ....+..|++.+ ++ .|+.+...+.|.
T Consensus 26 ~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~~~~i~ 104 (322)
T 2fp8_A 26 FDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDCYYHLS 104 (322)
T ss_dssp CCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEETTTEEE
T ss_pred EcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEECCCCEE
Confidence 344577778888888899997653 2322210 123578999997 55 566665556688
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeC----------
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSW---------- 255 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~---------- 255 (473)
.+|..++......... .. ........+++.+ +|++.++-..
T Consensus 105 ~~d~~~g~~~~~~~~~--~~--------------------------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 105 VVGSEGGHATQLATSV--DG--------------------------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp EECTTCEECEEEESEE--TT--------------------------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred EEeCCCCEEEEecccC--CC--------------------------CcccccceEEEecCCCEEEEECCcccccccccce
Confidence 8887654321111000 00 0123467799999 8876665432
Q ss_pred -------CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEE-eCCCcEEEEeCcccCCCcceeeeeeeccCCcc
Q 012007 256 -------DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTG-SADGTVKVWRRELQGKGTKHCLAQVLLKHENA 326 (473)
Q Consensus 256 -------dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
++.|..||..+++...... .....+.+++++++ .|+.+ ...+.|.+|++........ ..... ...
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~-~~~~~---~~g- 230 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA-EVLVK---IPN- 230 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE-EEEEE---CSS-
T ss_pred ehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc-ceEEe---CCC-
Confidence 3678889987776433222 22345678999987 45544 5678999999863221111 11111 123
Q ss_pred EEEEEEccCCCEEEEeCC----------CCcEEEEecCCcccccceeecC----cceEEEEE-ecCCEEEEEeCCCcEEE
Q 012007 327 VTALAVNQESAVVYCGSS----------DGLVNFWECEKHLSHGGVLRGH----KMAVLCLA-AAGNLVFSGSADRNICL 391 (473)
Q Consensus 327 v~~l~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~-~~~~~l~s~~~dg~i~i 391 (473)
...+++.++|++.++... .+.|..+|... ... ..+... ...+.++. .++.++++...++.|.+
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G-~~~-~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~ 308 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG-NIL-EVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGI 308 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS-CEE-EEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEE
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC-CEE-EEEECCCCCccccceEEEEeCCEEEEeecCCCceEE
Confidence 788999999987666543 46688888653 222 122111 11233333 34555555556788999
Q ss_pred EecCC
Q 012007 392 WRREE 396 (473)
Q Consensus 392 wd~~~ 396 (473)
+++..
T Consensus 309 ~~~~~ 313 (322)
T 2fp8_A 309 LVYDK 313 (322)
T ss_dssp EEC--
T ss_pred Eeccc
Confidence 98765
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.62 E-value=5.4e-06 Score=84.30 Aligned_cols=238 Identities=11% Similarity=0.139 Sum_probs=137.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
+..|+.++.|+.|..+|..+++..-............ ....++ + .+..+++
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~-----------------------~~~~P~--v----~~~~v~v 167 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYS-----------------------ITGAPR--V----VKGKVII 167 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCB-----------------------CCSCCE--E----ETTEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcce-----------------------ecCCCE--E----ECCEEEE
Confidence 4588888999999999999998776654321100000 001111 1 1335555
Q ss_pred EeC------CCCEEEEEcCCCeeeEEeecCC-C------------------------------ceeEEEEcCC-CEEEEE
Q 012007 253 GSW------DKTLKVWRISDCKCLESINAHD-D------------------------------AINSVVAGFD-SLVFTG 294 (473)
Q Consensus 253 ~s~------dg~v~vwd~~~~~~~~~~~~~~-~------------------------------~v~~l~~~~~-~~l~s~ 294 (473)
+.. +|.|..+|.++|+.+..+.... . ....+++.++ ++++.+
T Consensus 168 g~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~ 247 (668)
T 1kv9_A 168 GNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVG 247 (668)
T ss_dssp CCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEE
T ss_pred eCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEe
Confidence 543 5889999999999988775311 0 0113466654 477777
Q ss_pred eCCCc-------------------EEEEeCcccCCCcceeeeeeeccCC-------ccEEEEEEccCCC---EEEEeCCC
Q 012007 295 SADGT-------------------VKVWRRELQGKGTKHCLAQVLLKHE-------NAVTALAVNQESA---VVYCGSSD 345 (473)
Q Consensus 295 ~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~~~~~-------~~v~~l~~~~~~~---~l~~~~~d 345 (473)
+.++. |..+|.++++. .... ....|. .+.....+..+++ .++.++.+
T Consensus 248 ~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~--~W~~--~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~ 323 (668)
T 1kv9_A 248 TGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL--AWHY--QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKN 323 (668)
T ss_dssp CCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEE--ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTT
T ss_pred CCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce--eeEe--ecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCC
Confidence 77663 88888875432 1111 111121 2233233334564 68899999
Q ss_pred CcEEEEecCCcccccceeec-------------------------------------CcceEEEEEecCCEEEEE-----
Q 012007 346 GLVNFWECEKHLSHGGVLRG-------------------------------------HKMAVLCLAAAGNLVFSG----- 383 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~-------------------------------------~~~~v~~~~~~~~~l~s~----- 383 (473)
|.++++|.++++.+...... +.-...+++++..+++..
T Consensus 324 G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~ 403 (668)
T 1kv9_A 324 GFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVP 403 (668)
T ss_dssp SEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECC
T ss_pred CEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccc
Confidence 99999998876544111000 000013455554554431
Q ss_pred -------------------------------eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCC
Q 012007 384 -------------------------------SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKG 432 (473)
Q Consensus 384 -------------------------------~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~ 432 (473)
..+|.|..||+.++ +.+.....+ .++....+...+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg--------- 470 (668)
T 1kv9_A 404 GVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGN--------- 470 (668)
T ss_dssp EEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTT---------
T ss_pred eEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC---cEEEEccCC-CCCcCceeEeCCC---------
Confidence 13478999999884 333333322 2233333444444
Q ss_pred CccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 433 DQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 433 ~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+++.++.||.|++||..+++...+
T Consensus 471 ----~vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 471 ----LVFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp ----EEEEECTTSEEEEEETTTCCEEEE
T ss_pred ----EEEEECCcccchhhhhhcChhheE
Confidence 788899999999999998876544
No 249
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=0.00014 Score=75.64 Aligned_cols=290 Identities=10% Similarity=0.144 Sum_probs=165.3
Q ss_pred ccEEEEEec-CCEEEEeeCCCcEEEeeCCc-cccccc--------cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 124 GHIYSLAAS-GDLLYTGSDSKNIRVWKNLK-EFSGFK--------SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 124 ~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~-~~~~~~--------~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
..|.++..+ ...|..|+.+ -+.+||... .+..+. .....|.+|....+|. |..|...+-|.++|..+.
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQN 288 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCC
Confidence 457888776 2345555655 588888542 222221 1245699999988884 555666456888888765
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 273 (473)
......... +..+ ....... .-....|.++...++|. |..|+.++-|..++..........
T Consensus 289 ~~~~~~~~~----f~~~-~~~~~~~-------------~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~ 349 (781)
T 3v9f_A 289 QFLLPEQIR----FEFI-REGDNNY-------------SLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWS 349 (781)
T ss_dssp -------------CEEE-CBCSSTT-------------SBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC
T ss_pred eeeeeeccc----cccc-cCCCCCC-------------CCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeec
Confidence 432211100 0000 0000000 00346789999888775 667777788999988755432211
Q ss_pred ---------ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC
Q 012007 274 ---------NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 274 ---------~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
......|.++....++.|..|+.++-|..||...... .............|.++...+++.+. +|+.
T Consensus 350 ~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~---~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~ 425 (781)
T 3v9f_A 350 YSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA---IYNKENRELLSNSVLCSLKDSEGNLW-FGTY 425 (781)
T ss_dssp ----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE---ECC-----CCCSBEEEEEECTTSCEE-EEET
T ss_pred cCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE---EEccCCCCCCCcceEEEEECCCCCEE-EEec
Confidence 1123568999988888888888888899998753210 00000011234678999988887755 4666
Q ss_pred CCcEEEEecCCccccccee-ecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEec---CCCCceeEEEEe
Q 012007 345 DGLVNFWECEKHLSHGGVL-RGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLT---GHTGPVKCLAVE 419 (473)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~h~~~V~~l~~~ 419 (473)
++-|..+|..++....... ......|.++..+ ...|..|+. +.|.+||..+.. ........ .....|.++...
T Consensus 426 ~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d 503 (781)
T 3v9f_A 426 LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKK-VIHHYDTSNSQLLENFVRSIAQD 503 (781)
T ss_dssp TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSS-CCEEECTTTSSCSCSCEEEEEEC
T ss_pred cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCe-EEecccCcccccccceeEEEEEc
Confidence 6678889876542211110 1133567788776 446666776 568899987632 22222111 113578999888
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+++. |..|+.++-|..|+...
T Consensus 504 ~~g~--------------lWigt~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 504 SEGR--------------FWIGTFGGGVGIYTPDM 524 (781)
T ss_dssp TTCC--------------EEEEESSSCEEEECTTC
T ss_pred CCCC--------------EEEEEcCCCEEEEeCCC
Confidence 8876 44455434466677543
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.60 E-value=8.2e-05 Score=66.25 Aligned_cols=195 Identities=8% Similarity=0.008 Sum_probs=115.6
Q ss_pred CeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CEEE-EEeCCCcEEEEeCcccCCCcc
Q 012007 237 AVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVF-TGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~l~-s~~~dg~i~vwd~~~~~~~~~ 313 (473)
.+..++|++++..|+.+. .++.|..+++........+.........+++.++ +.++ +-...+.|.++++.... .
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~---~ 113 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---R 113 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---C
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---E
Confidence 467899999766666655 5678999998765443333333356788999875 4444 44557889999875211 1
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCC---CCcEEEEecCCcccccceeec--CcceEEEEEecCCEEEEE-eCCC
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSS---DGLVNFWECEKHLSHGGVLRG--HKMAVLCLAAAGNLVFSG-SADR 387 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~-~~dg 387 (473)
. ............++++|++..|+.+.. .+.|..+++...... ..... ....-+++++++..|+.+ ...+
T Consensus 114 ~---~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~-~~~~~~~~~P~gia~d~~~~~lyv~d~~~~ 189 (267)
T 1npe_A 114 R---VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGLPNGLTFDAFSSQLCWVDAGTH 189 (267)
T ss_dssp E---EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred E---EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE-EEEECCCCCCcEEEEcCCCCEEEEEECCCC
Confidence 1 111112245789999997665555443 368888887643211 11111 112235566666655544 4567
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.|.+++.... .....+.+- .....++.. .+. ++++....+.|.+++...++
T Consensus 190 ~I~~~~~~g~---~~~~~~~~~-~~P~gi~~d-~~~-------------lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 190 RAECLNPAQP---GRRKVLEGL-QYPFAVTSY-GKN-------------LYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp EEEEEETTEE---EEEEEEECC-CSEEEEEEE-TTE-------------EEEEETTTTEEEEEETTTTE
T ss_pred EEEEEecCCC---ceEEEecCC-CCceEEEEe-CCE-------------EEEEECCCCeEEEEeCCCCC
Confidence 8999998752 222222222 233566654 222 55555567889999987654
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.59 E-value=0.00022 Score=64.84 Aligned_cols=222 Identities=13% Similarity=0.081 Sum_probs=127.0
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
.....++|+++++++++-..++.|..||..... ..... .......+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~---------------------------------~~~~p~gi 77 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHAT---------------------------------VEGKVSGL 77 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEE---------------------------------CSSEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEe---------------------------------CCCCceeE
Confidence 346788999998876666678899999876532 11111 22357789
Q ss_pred EEcCCCCEEEEEeCCC--CEEEEEcCCCeeeEEeec-CCCceeEEEEcCCCEEEEEe-CCCcEEEEeCcccCCCcceeee
Q 012007 242 SLNAEQGLLYSGSWDK--TLKVWRISDCKCLESINA-HDDAINSVVAGFDSLVFTGS-ADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
++.++++++++..... .|..+|..+++....... .......++..+++.++... .++.|.++|...... .....
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~--~v~~~ 155 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG--SIWLE 155 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE--EEEEE
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE--eEEEE
Confidence 9999998655554332 377778777765433221 22233455555566544444 588888888652100 00000
Q ss_pred ----e--eeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecCC-ccc-ccceee-cCcceEEEEEecCCEEEEEeCCC
Q 012007 318 ----Q--VLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEK-HLS-HGGVLR-GHKMAVLCLAAAGNLVFSGSADR 387 (473)
Q Consensus 318 ----~--~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~-~~~-~~~~~~-~~~~~v~~~~~~~~~l~s~~~dg 387 (473)
. .....-.....| +++++.|+. -...+.|..||+.. +.. ....+. .....-+++.++|+++++....+
T Consensus 156 ~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~ 233 (306)
T 2p4o_A 156 HPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYN 233 (306)
T ss_dssp CGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTC
T ss_pred CCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCC
Confidence 0 001111234555 778765554 45678999999864 211 111111 11122256677898877777788
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEe---cCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVE---EDRD 423 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~~ 423 (473)
.|.+++... . ...+..+.......++++|. +++.
T Consensus 234 ~V~~~~~~G-~-~~~~~~~~~~~~~p~~~a~~g~~~d~~ 270 (306)
T 2p4o_A 234 SVVRIAPDR-S-TTIIAQAEQGVIGSTAVAFGQTEGDCT 270 (306)
T ss_dssp CEEEECTTC-C-EEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred eEEEECCCC-C-EEEEeecccccCCceEEEEecccCCCC
Confidence 999998753 1 22233333333568999998 7765
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.58 E-value=1.3e-05 Score=69.76 Aligned_cols=173 Identities=10% Similarity=0.055 Sum_probs=107.2
Q ss_pred eeEEEEcCCCCEEEEEeCCC--CEEEEEcCCCeeeEEeecCCCc-eeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcce
Q 012007 238 VSCLSLNAEQGLLYSGSWDK--TLKVWRISDCKCLESINAHDDA-INSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKH 314 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 314 (473)
...|.|+ ++.++.+.+.+| .|+++|+.+++.+..+...... -..+....+.+.++.-.++.+.+||..+..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~----- 118 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR----- 118 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC-----
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc-----
Confidence 4788998 666666666665 8999999999999888754332 233555444455555568999999987432
Q ss_pred eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec---Cc-ceEEEEEe-cCCEEEEEeCCCcE
Q 012007 315 CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG---HK-MAVLCLAA-AGNLVFSGSADRNI 389 (473)
Q Consensus 315 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~-~~v~~~~~-~~~~l~s~~~dg~i 389 (473)
....+.... ....+.+++..|+.+..++.|.++|..+......+..+ .. ..+..+.+ +|.+.+..-.++.|
T Consensus 119 -~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I 194 (262)
T 3nol_A 119 -QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKI 194 (262)
T ss_dssp -EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEE
T ss_pred -EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeE
Confidence 122222111 11233356777777766788999999875544333221 11 11222333 56544444467899
Q ss_pred EEEecCCCCceeEEEEecCC------------CCceeEEEEecCCC
Q 012007 390 CLWRREESGAHSCLAVLTGH------------TGPVKCLAVEEDRD 423 (473)
Q Consensus 390 ~iwd~~~~~~~~~~~~~~~h------------~~~V~~l~~~~~~~ 423 (473)
.+.|..++ +.+..+... ....+.|||+|+..
T Consensus 195 ~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 195 VRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp EEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred EEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence 99999984 444433321 23568999999887
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.57 E-value=1.9e-05 Score=69.55 Aligned_cols=194 Identities=6% Similarity=-0.012 Sum_probs=120.6
Q ss_pred cEEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 163 LVKAIIISGDSNKIFTGHQ--DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
....++|++++.+.++.+. ++.|++.|+.+++......+.. ......
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-------------------------------~~fgeG 70 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-------------------------------SYFGEG 70 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-------------------------------TCCEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-------------------------------CcceEE
Confidence 4689999998744444443 5799999999998766554321 111223
Q ss_pred EEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 241 LSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 241 l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
+++. ++.|+.+. .++.+.++|..+.+.+.++......-..++.. .+.++++..++.|.++|..+... ....
T Consensus 71 i~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~D-g~~l~vs~gs~~l~viD~~t~~v-----~~~I 142 (266)
T 2iwa_A 71 LTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATD-GKILYGSDGTSILYEIDPHTFKL-----IKKH 142 (266)
T ss_dssp EEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEEC-SSSEEEECSSSEEEEECTTTCCE-----EEEE
T ss_pred EEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEEC-CCEEEEECCCCeEEEEECCCCcE-----EEEE
Confidence 4554 45666655 56889999999999999886431222344442 23555556788999999874321 1111
Q ss_pred ecc-C---CccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-C-------------cceEEEEEecCC-EE
Q 012007 320 LLK-H---ENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-H-------------KMAVLCLAAAGN-LV 380 (473)
Q Consensus 320 ~~~-~---~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~-~l 380 (473)
..+ . -..+..+.|. ++...+....++.|.+.|..++.....+..+ - ...-.+++++++ ++
T Consensus 143 ~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lf 221 (266)
T 2iwa_A 143 NVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIF 221 (266)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEE
T ss_pred EECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEE
Confidence 111 1 1236778888 6766666666889999999886654333221 0 112345556655 56
Q ss_pred EEEeCCCcEEEEecCC
Q 012007 381 FSGSADRNICLWRREE 396 (473)
Q Consensus 381 ~s~~~dg~i~iwd~~~ 396 (473)
+++...+.|.+.++..
T Consensus 222 VTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 222 VTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEETTCSEEEEEEEEE
T ss_pred EECCCCCeEEEEEEec
Confidence 6666778888888765
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.57 E-value=4.1e-05 Score=69.83 Aligned_cols=190 Identities=9% Similarity=0.004 Sum_probs=108.6
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCC-C-eEEEEeCCCCCeeeEEeeccccc
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQD-G-KIRIWKVSRKNASVHKRVGSLPT 206 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g-~i~vwd~~~~~~~~~~~~~~~~~ 206 (473)
+.++|+++++-..++.|..||............+.+..|++.++|+++++.... + .|..++..+++........
T Consensus 39 ~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~---- 114 (306)
T 2p4o_A 39 SAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP---- 114 (306)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT----
T ss_pred ECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC----
Confidence 344577777766788999998664433333334578899999999866655432 2 4666676666543222110
Q ss_pred cceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee-eEEee---------cC
Q 012007 207 FKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC-LESIN---------AH 276 (473)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~---------~~ 276 (473)
.......++..+++..+++-..++.|.++|...++. +.... ..
T Consensus 115 ---------------------------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~ 167 (306)
T 2p4o_A 115 ---------------------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV 167 (306)
T ss_dssp ---------------------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred ---------------------------CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCC
Confidence 111123334444444444444578899999876531 21110 11
Q ss_pred CCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 277 DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 277 ~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
-...+.+ ++++ ++++-...+.|..+++...+.......... ......|+++++|+++++....+.|.++|..
T Consensus 168 ~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 168 FPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp SCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 1234455 4554 445556678999999864211111111111 1345668999999887777778899999976
Q ss_pred C
Q 012007 355 K 355 (473)
Q Consensus 355 ~ 355 (473)
.
T Consensus 242 G 242 (306)
T 2p4o_A 242 R 242 (306)
T ss_dssp C
T ss_pred C
Confidence 3
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.50 E-value=6.5e-05 Score=74.72 Aligned_cols=286 Identities=10% Similarity=0.053 Sum_probs=144.0
Q ss_pred ecCCEEEEeeCCCcEEEeeCCc--cccccc--cCc--ccEEE-EEEeCCCCEEEEEeC------CCeEEEEeCCCCCeee
Q 012007 131 ASGDLLYTGSDSKNIRVWKNLK--EFSGFK--SNS--GLVKA-IIISGDSNKIFTGHQ------DGKIRIWKVSRKNASV 197 (473)
Q Consensus 131 ~~g~~l~tg~~dg~i~vwd~~~--~~~~~~--~h~--~~V~~-l~~s~~~~~l~s~~~------dg~i~vwd~~~~~~~~ 197 (473)
.++..++.++.|+.|..+|... .+-.+. .+. ..+.+ .... ++ .++.++. +|.|..+|..+++..-
T Consensus 113 ~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 113 YGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred EECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 3466777788888888888542 221111 110 01111 1111 34 5666654 7999999999998776
Q ss_pred EEeeccccccceeEeecC-CCcceE-------EEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC-------------
Q 012007 198 HKRVGSLPTFKDYVKSSV-NPKNYV-------EVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD------------- 256 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d------------- 256 (473)
......... ........ ....+. ...... ....+.......+++.++...++.+..+
T Consensus 191 ~~~~~~~~~-~~~~~p~~~~~~~~~G~~~~g~~~w~~~-~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 191 RAFATGSDD-SVRLAKDFNSANPHYGQFGLGTKTWEGD-AWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EEESSSCHH-HHTBCTTTTTTCGGGCCSSHHHHTSSTT-GGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEccCCCcc-ccccCcccccccccccccccccccCccc-ceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence 555332110 00000000 000000 000000 0000000111235566766677776532
Q ss_pred ---CCEEEEEcCCCeeeEEeecC--CC----ceeE---EEEcCCC----EEEEEeCCCcEEEEeCcccCCCcceeeee--
Q 012007 257 ---KTLKVWRISDCKCLESINAH--DD----AINS---VVAGFDS----LVFTGSADGTVKVWRRELQGKGTKHCLAQ-- 318 (473)
Q Consensus 257 ---g~v~vwd~~~~~~~~~~~~~--~~----~v~~---l~~~~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-- 318 (473)
+.|..+|..+++.+..++.. .. .+.. +....++ .++.++.+|.+.++|.++++..-......
T Consensus 269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV 348 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCc
Confidence 35999999999998877632 11 1111 1111244 46678889999999987543211100000
Q ss_pred ----eec-cCCccE--------------------------EEEEEccCCCEEEEeC------------------------
Q 012007 319 ----VLL-KHENAV--------------------------TALAVNQESAVVYCGS------------------------ 343 (473)
Q Consensus 319 ----~~~-~~~~~v--------------------------~~l~~~~~~~~l~~~~------------------------ 343 (473)
... ....++ ..++++|+..+|++..
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 000 000011 2467888777776653
Q ss_pred -------------CCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC
Q 012007 344 -------------SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT 410 (473)
Q Consensus 344 -------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 410 (473)
.+|.|..||..+++..-....+.......+...+.+++.++.|+.|+.||..++ +.+..+....
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG---~~lw~~~~~~ 505 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG---KELWNFKMPS 505 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSS
T ss_pred ceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCC---CEEEEEeCCC
Confidence 357899999887655433222221111223456788888999999999999984 4454444222
Q ss_pred C-ceeEEEEecCCC
Q 012007 411 G-PVKCLAVEEDRD 423 (473)
Q Consensus 411 ~-~V~~l~~~~~~~ 423 (473)
. .-.-+.+..++.
T Consensus 506 ~~~~~p~~~~~~G~ 519 (571)
T 2ad6_A 506 GGIGSPMTYSFKGK 519 (571)
T ss_dssp CCCSCCEEEEETTE
T ss_pred CcEeeeEEEEECCE
Confidence 1 112234556665
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.48 E-value=9.6e-05 Score=64.35 Aligned_cols=174 Identities=10% Similarity=0.052 Sum_probs=109.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCC-ceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCccee
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD-AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
....|.|+ ++.+..+.+.+|.|+++|+++++.+..+ .... .-..++...+.+.++.-.++.+.+||..+..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~------ 127 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ------ 127 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE------
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc------
Confidence 34788887 4566667778889999999999998887 3322 2234666655566666678999999987432
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-Ccc---eEEEEEe-cCCEEEEEeCCCcEE
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-HKM---AVLCLAA-AGNLVFSGSADRNIC 390 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~---~v~~~~~-~~~~l~s~~~dg~i~ 390 (473)
....+... ..-..++ ++++.|+.+..++.|.++|.++......+..+ +.. .+..+.+ +|.+.+..-.++.|.
T Consensus 128 ~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 128 RERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVL 204 (268)
T ss_dssp EEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEE
T ss_pred EEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEE
Confidence 12222211 1113343 56778888777899999999876544333221 211 2233444 565444444678999
Q ss_pred EEecCCCCceeEEEEecC-------------CCCceeEEEEecCCCC
Q 012007 391 LWRREESGAHSCLAVLTG-------------HTGPVKCLAVEEDRDH 424 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~-------------h~~~V~~l~~~~~~~~ 424 (473)
+.|..++ +.+..+.- -....+.||++|++..
T Consensus 205 vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r 248 (268)
T 3nok_A 205 EIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR 248 (268)
T ss_dssp EECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred EEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence 9999984 33433321 1235689999998774
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.46 E-value=9e-05 Score=73.80 Aligned_cols=180 Identities=13% Similarity=0.082 Sum_probs=102.2
Q ss_pred EEEEcCCCCEEEEEeCC----------------CCEEEEEcCCCeeeEEeecCCC----------ceeEEEEc-CCC---
Q 012007 240 CLSLNAEQGLLYSGSWD----------------KTLKVWRISDCKCLESINAHDD----------AINSVVAG-FDS--- 289 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~d----------------g~v~vwd~~~~~~~~~~~~~~~----------~v~~l~~~-~~~--- 289 (473)
.+++.++..+++.+..+ +.|..+|..+|+.+..++.... ++. +... .++
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 35566777788877665 3799999999999887764321 111 2221 334
Q ss_pred -EEEEEeCCCcEEEEeCcccCCCcceeeee------eec-cCCccE--------------------------EEEEEccC
Q 012007 290 -LVFTGSADGTVKVWRRELQGKGTKHCLAQ------VLL-KHENAV--------------------------TALAVNQE 335 (473)
Q Consensus 290 -~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~~-~~~~~v--------------------------~~l~~~~~ 335 (473)
.++.++.+|.+.++|.++++..-...... ... ....++ ..++++|+
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 403 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK 403 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence 56678899999999987554211111000 000 000000 23566666
Q ss_pred CCEEEEe---------------------------------C------CCCcEEEEecCCcccccceeecCcceEEEEEec
Q 012007 336 SAVVYCG---------------------------------S------SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA 376 (473)
Q Consensus 336 ~~~l~~~---------------------------------~------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 376 (473)
..++++. + .+|.|..||+.+++..-....+.....-.+...
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~ta 483 (599)
T 1w6s_A 404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATA 483 (599)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEET
T ss_pred CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEec
Confidence 5555442 1 346788888887654432222211111224557
Q ss_pred CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCC-ceeEEEEecCCC
Q 012007 377 GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTG-PVKCLAVEEDRD 423 (473)
Q Consensus 377 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~ 423 (473)
+.+++.++.|+.|+.||.+++ +.+..+.-..+ ...-+.+..+++
T Consensus 484 gg~vf~gt~dg~l~A~D~~tG---~~lW~~~l~~g~~~~P~~y~~~G~ 528 (599)
T 1w6s_A 484 GDLVFYGTLDGYLKARDSDTG---DLLWKFKIPSGAIGYPMTYTHKGT 528 (599)
T ss_dssp TTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCEEEEECCCCeEEEEECCCC---CEEEEeeCCCCcEeccEEEEeCCE
Confidence 888889999999999999994 44554432222 122345555654
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.43 E-value=0.00015 Score=62.58 Aligned_cols=176 Identities=11% Similarity=0.016 Sum_probs=107.8
Q ss_pred CCeeEEEEcCCCCEEEEEeCC--CCEEEEEcCCCeeeEEeecCCCc-eeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCc
Q 012007 236 DAVSCLSLNAEQGLLYSGSWD--KTLKVWRISDCKCLESINAHDDA-INSVVAGFDSLVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~d--g~v~vwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
.....+.|+. +.++.+.+.+ ..|+.+|+.+++.+..+...... -..++...+.+....-.++.+.+||..+..
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~--- 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT--- 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE---
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc---
Confidence 4467899986 4555555554 48999999999999888654332 234555444455556678999999986422
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-Cc---ceEEEEEec-CCEEEEEeCCC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-HK---MAVLCLAAA-GNLVFSGSADR 387 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~---~~v~~~~~~-~~~l~s~~~dg 387 (473)
....+.... .-..++ +++..|+.+..++.|.++|..+......+..+ +. ..+..+.+. |...+..-.+.
T Consensus 97 ---~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~ 170 (243)
T 3mbr_X 97 ---PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTS 170 (243)
T ss_dssp ---EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTT
T ss_pred ---EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCC
Confidence 222222211 113344 56666777777889999999875544333221 11 122344454 55444444577
Q ss_pred cEEEEecCCCCceeEEEEecC-------------CCCceeEEEEecCCCC
Q 012007 388 NICLWRREESGAHSCLAVLTG-------------HTGPVKCLAVEEDRDH 424 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~-------------h~~~V~~l~~~~~~~~ 424 (473)
.|.+.|..++ +.+..+.- -....+.||++|+...
T Consensus 171 ~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 217 (243)
T 3mbr_X 171 RIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR 217 (243)
T ss_dssp EEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred eEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence 9999999984 34443321 1235689999998773
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.41 E-value=6e-05 Score=65.62 Aligned_cols=159 Identities=9% Similarity=0.039 Sum_probs=99.9
Q ss_pred ccEEEEEEeCCCCEEEEEeCCC--eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 162 GLVKAIIISGDSNKIFTGHQDG--KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
.-...|.|+ ++.+..+.+.+| .|+++|+.+++......+. ....
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---------------------------------~~~F 88 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---------------------------------KRYF 88 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---------------------------------TTCC
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC---------------------------------Cccc
Confidence 346889998 676677777776 8999999999876655432 1121
Q ss_pred EEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 240 CLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
...+.++++.|+... .++.+.+||..+.+.+.++..... =..++.. .+.|+....++.|.++|..+.... .....
T Consensus 89 geGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e-G~glt~d-g~~L~~SdGs~~i~~iDp~T~~v~--~~I~V 164 (262)
T 3nol_A 89 GEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE-GWGLTHN-DQYLIMSDGTPVLRFLDPESLTPV--RTITV 164 (262)
T ss_dssp EEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCCEEEC-SSCEEECCSSSEEEEECTTTCSEE--EEEEC
T ss_pred eeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC-ceEEecC-CCEEEEECCCCeEEEEcCCCCeEE--EEEEe
Confidence 211222355666665 478899999999999999885432 2345543 335555555788999998743321 11111
Q ss_pred eeccCC-ccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc
Q 012007 319 VLLKHE-NAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 319 ~~~~~~-~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 359 (473)
...+.. ..++.+.|. +|+..+..-.++.|.+.|.+++...
T Consensus 165 ~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 165 TAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT 205 (262)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE
T ss_pred ccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE
Confidence 111111 334567776 6766666667889999999876543
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.40 E-value=9.4e-05 Score=73.59 Aligned_cols=153 Identities=9% Similarity=0.003 Sum_probs=87.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
+..|+.++.|+.|..+|..+++..-............ -...++ . .+..+++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~-----------------------~~~~P~----v--~~g~v~v 165 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGST-----------------------LTQAPF----V--AKDTVLM 165 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCB-----------------------CCSCCE----E--ETTEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccce-----------------------eccCCE----E--ECCEEEE
Confidence 4588888899999999999998766554321100000 011111 1 1345666
Q ss_pred EeC------CCCEEEEEcCCCeeeEEeecCCCc-------------------------------------e-eEEEEcCC
Q 012007 253 GSW------DKTLKVWRISDCKCLESINAHDDA-------------------------------------I-NSVVAGFD 288 (473)
Q Consensus 253 ~s~------dg~v~vwd~~~~~~~~~~~~~~~~-------------------------------------v-~~l~~~~~ 288 (473)
++. ++.|..+|.++++.+..+...... + ..+++.++
T Consensus 166 g~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~ 245 (571)
T 2ad6_A 166 GCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK 245 (571)
T ss_dssp ECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT
T ss_pred EecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCC
Confidence 654 789999999999998877542211 0 12344443
Q ss_pred -CEEEEEeCC----------------CcEEEEeCcccCCCcceeeeeeeccC--------CccEEEEEEccCCC---EEE
Q 012007 289 -SLVFTGSAD----------------GTVKVWRRELQGKGTKHCLAQVLLKH--------ENAVTALAVNQESA---VVY 340 (473)
Q Consensus 289 -~~l~s~~~d----------------g~i~vwd~~~~~~~~~~~~~~~~~~~--------~~~v~~l~~~~~~~---~l~ 340 (473)
+.++.+..+ +.|..+|.++++. .... ....| ..++. +....+|+ .++
T Consensus 246 ~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~--~W~~--~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~ 320 (571)
T 2ad6_A 246 LNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA--KWGY--QKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLS 320 (571)
T ss_dssp TTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE--EEEE--ESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEE
T ss_pred CCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE--EEEe--cCCCCcccccccCCCCEE-EecccCCcEEEEEE
Confidence 466665532 2588888875432 1111 11111 12222 22234673 677
Q ss_pred EeCCCCcEEEEecCCcccc
Q 012007 341 CGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~~~ 359 (473)
.++.+|.+.++|.++++..
T Consensus 321 ~~~~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 321 HIDRNGILYTLNRENGNLI 339 (571)
T ss_dssp EECTTSEEEEEETTTCCEE
T ss_pred EeCCCcEEEEEECCCCCEE
Confidence 8899999999998876543
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.38 E-value=0.00012 Score=72.95 Aligned_cols=158 Identities=9% Similarity=0.052 Sum_probs=90.3
Q ss_pred EEEeCCCCE----EEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE-E
Q 012007 167 IIISGDSNK----IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC-L 241 (473)
Q Consensus 167 l~~s~~~~~----l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l 241 (473)
+++.|.+.. |+.++.|+.|..+|..+++..-........ ....+.+ -
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~----------------------------~~~~~~ssP 162 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK----------------------------VGSTLTIAP 162 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG----------------------------GTCBCCSCC
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCC----------------------------ccceeecCC
Confidence 455443334 888889999999999999876554432110 0000110 0
Q ss_pred EEcCCCCEEEEEe------CCCCEEEEEcCCCeeeEEeecCCCc------------------------------------
Q 012007 242 SLNAEQGLLYSGS------WDKTLKVWRISDCKCLESINAHDDA------------------------------------ 279 (473)
Q Consensus 242 ~~~~~~~~l~s~s------~dg~v~vwd~~~~~~~~~~~~~~~~------------------------------------ 279 (473)
.+. + ..+++++ .++.|+.+|.++|+.+..+......
T Consensus 163 ~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~ 240 (599)
T 1w6s_A 163 YVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGG 240 (599)
T ss_dssp EEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCC
T ss_pred EEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCC
Confidence 011 3 3455554 3789999999999998777543211
Q ss_pred -e-eEEEEcCC-CEEEEEeCCC----------------cEEEEeCcccCCCcceeeeeeeccCC--------ccEEEEEE
Q 012007 280 -I-NSVVAGFD-SLVFTGSADG----------------TVKVWRRELQGKGTKHCLAQVLLKHE--------NAVTALAV 332 (473)
Q Consensus 280 -v-~~l~~~~~-~~l~s~~~dg----------------~i~vwd~~~~~~~~~~~~~~~~~~~~--------~~v~~l~~ 332 (473)
+ ..+++.++ ++++.+..++ .|..+|.++++. ... .....|. .++. +..
T Consensus 241 ~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~--~W~--~q~~~~d~wd~d~~~~p~l-~d~ 315 (599)
T 1w6s_A 241 TNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA--KFG--YQKTPHDEWDYAGVNVMML-SEQ 315 (599)
T ss_dssp CCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE--EEE--EESSTTCSSCCCCCCCCEE-EEE
T ss_pred ccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce--eeE--eecCCCccccccCCCccEE-Eec
Confidence 0 02233333 4777766553 788888875432 111 1122221 2222 222
Q ss_pred c-cCC---CEEEEeCCCCcEEEEecCCcccc
Q 012007 333 N-QES---AVVYCGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 333 ~-~~~---~~l~~~~~dg~i~iwd~~~~~~~ 359 (473)
. .+| ..++.++.+|.+.++|.++++.+
T Consensus 316 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 316 KDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp ECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 2 466 56778899999999998876543
No 262
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=0.00014 Score=69.62 Aligned_cols=152 Identities=6% Similarity=0.005 Sum_probs=92.5
Q ss_pred cEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 163 LVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 163 ~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
....|+++| ++..|+.+...+.|+.+|+..+....... .......|
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~---------------------------------~~~~P~~i 184 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS---------------------------------GLSKVRTI 184 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC---------------------------------CCSCEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec---------------------------------CCCCcceE
Confidence 457889998 45567766665788889887654322111 33457789
Q ss_pred EEcCCCCEEEEEeCC-C----CEEEEEcCCCeee--EEeecCCCceeEEEEcC-CCEEE-EEeCCCcEEEEeCcccCCCc
Q 012007 242 SLNAEQGLLYSGSWD-K----TLKVWRISDCKCL--ESINAHDDAINSVVAGF-DSLVF-TGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 242 ~~~~~~~~l~s~s~d-g----~v~vwd~~~~~~~--~~~~~~~~~v~~l~~~~-~~~l~-s~~~dg~i~vwd~~~~~~~~ 312 (473)
+|++++++|+++... + .+.+.+. .+... ..+.. ......+++.+ ++.|+ +-..++.|..++....
T Consensus 185 a~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~---- 258 (430)
T 3tc9_A 185 CWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ---- 258 (430)
T ss_dssp EECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT----
T ss_pred EEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC----
Confidence 999999977777652 1 2333443 33221 22221 23456778888 66544 4456788999987621
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCE-EEEeCCCCcEEEEecC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAV-VYCGSSDGLVNFWECE 354 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~dg~i~iwd~~ 354 (473)
................|+|+|++++ +++-...+.|..++..
T Consensus 259 -~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 259 -ETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp -EEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred -cEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 1101111112245678999999994 4555667889998765
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.36 E-value=0.00064 Score=67.70 Aligned_cols=180 Identities=17% Similarity=0.102 Sum_probs=104.5
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CCEEEEEcCCCeeeEEeec--CC--------CceeEEEE
Q 012007 240 CLSLNAEQGLLYSGSW--------------------D----KTLKVWRISDCKCLESINA--HD--------DAINSVVA 285 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~--------------------d----g~v~vwd~~~~~~~~~~~~--~~--------~~v~~l~~ 285 (473)
.++++++..+++.+.. | +.|..+|..+|+.+..++. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4677787788887763 2 5799999999999888753 32 1111 111
Q ss_pred c-CCC----EEEEEeCCCcEEEEeCcccCCCcceeeee------ee-------------c---------cCCcc------
Q 012007 286 G-FDS----LVFTGSADGTVKVWRRELQGKGTKHCLAQ------VL-------------L---------KHENA------ 326 (473)
Q Consensus 286 ~-~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~-------------~---------~~~~~------ 326 (473)
. .++ .++.++.+|.+.++|.++++..-...... .. . .....
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 1 234 67789999999999987543211100000 00 0 00000
Q ss_pred -----EEEEEEccCCCEEEEeC---------------------------------CCCcEEEEecCCcccccceeecCcc
Q 012007 327 -----VTALAVNQESAVVYCGS---------------------------------SDGLVNFWECEKHLSHGGVLRGHKM 368 (473)
Q Consensus 327 -----v~~l~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (473)
-..++++|+..++++.. .+|.|..||+.+++..-....+...
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~ 488 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL 488 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC
Confidence 01356666655554432 3578999999876554332222221
Q ss_pred eEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCce-eEEEEecCCC
Q 012007 369 AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPV-KCLAVEEDRD 423 (473)
Q Consensus 369 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V-~~l~~~~~~~ 423 (473)
.-..+...+.+++.|+.|+.++.||.+++ +.+..+....+.+ .-+.+..+++
T Consensus 489 ~~g~~~tagglvf~g~~dg~l~A~D~~tG---~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 489 WAGVLATAGNLVFTGTGDGYFKAFDAKSG---KELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp CSCCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred cccceEeCCCEEEEECCCCcEEEEECCCC---CEEEEecCCCCcccCceEEEECCE
Confidence 11234456888999999999999999984 5555554432221 2356666665
No 264
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.32 E-value=0.00044 Score=60.50 Aligned_cols=205 Identities=10% Similarity=0.097 Sum_probs=122.5
Q ss_pred cccCcccEEEEEEeCCCCEEEE-EeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 157 FKSNSGLVKAIIISGDSNKIFT-GHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
+.+-.+.+..|+|+|+++.|++ ...++.|...|.. ++......+. -.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~-------------------------------g~ 69 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD-------------------------------FV 69 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS-------------------------------SC
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC-------------------------------CC
Confidence 3444467999999998766655 6678889888987 5544443322 12
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee---eEEee------cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeC
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC---LESIN------AHDDAINSVVAGFDS-LVFTGSADGTVKVWRR 305 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~---~~~~~------~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~ 305 (473)
.....|++.+++.++++.-.++.+.++++..... +.... ........+++.+.+ .|+++.......+|.+
T Consensus 70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence 4466788888887666655677888888765432 22221 123456899999887 6666666656666665
Q ss_pred cccCCCcceeeeee----eccCCccEEEEEEccC-CCEEEEeCCCCcEEEEecCCcccccceee-cC--------cceEE
Q 012007 306 ELQGKGTKHCLAQV----LLKHENAVTALAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVLR-GH--------KMAVL 371 (473)
Q Consensus 306 ~~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~--------~~~v~ 371 (473)
.............. ...+...+.+++++|. +++++.......|.++|..........+. +. ...-.
T Consensus 150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGi 229 (255)
T 3qqz_A 150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGV 229 (255)
T ss_dssp ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEE
T ss_pred cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCee
Confidence 41000000111100 0112345789999995 45666777778899999875422222222 11 22446
Q ss_pred EEEecCCEEEEEeCCCcEEEEec
Q 012007 372 CLAAAGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 372 ~~~~~~~~l~s~~~dg~i~iwd~ 394 (473)
++.++|++.++ ++-+.++.|..
T Consensus 230 a~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 230 AMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EECTTCCEEEE-ETTTEEEEEEC
T ss_pred EECCCCCEEEE-cCCceEEEEEe
Confidence 77778885555 66666666654
No 265
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.27 E-value=8.9e-05 Score=76.54 Aligned_cols=190 Identities=15% Similarity=0.076 Sum_probs=104.3
Q ss_pred EEEE-ecCCEEEEeeC-CC----cEEEeeCCcc-ccccccC-cccEEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCC
Q 012007 127 YSLA-ASGDLLYTGSD-SK----NIRVWKNLKE-FSGFKSN-SGLVKAIIISGDSNKIFTGHQD-----GKIRIWKVSRK 193 (473)
Q Consensus 127 ~~~~-~~g~~l~tg~~-dg----~i~vwd~~~~-~~~~~~h-~~~V~~l~~s~~~~~l~s~~~d-----g~i~vwd~~~~ 193 (473)
.+++ +||++||.+.. +| .|+++|+... .. +..+ ......++|+|||+.|+....| ..|.++++.++
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~ 257 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL 257 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC
Confidence 4678 88998775543 33 4999997643 21 1111 1224578999999888877665 25777777665
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC---CCCEEEEEcCCC--e
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW---DKTLKVWRISDC--K 268 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~---dg~v~vwd~~~~--~ 268 (473)
......... .........+.|+|||++|+..+. ...|.++|+.++ +
T Consensus 258 ~~~~~lv~~-----------------------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~ 308 (751)
T 2xe4_A 258 QSEDVCLYE-----------------------------EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH 308 (751)
T ss_dssp GGGCEEEEE-----------------------------CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred chhcEEEEe-----------------------------cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence 321111000 012234567889999998887663 345888898765 2
Q ss_pred e--eEEeecCCCceeEEEEcCCCEE-EEEeCC--C--cEEEEeCcccCCCcceeeeee-eccCCc--cEEEEEEccCCCE
Q 012007 269 C--LESINAHDDAINSVVAGFDSLV-FTGSAD--G--TVKVWRRELQGKGTKHCLAQV-LLKHEN--AVTALAVNQESAV 338 (473)
Q Consensus 269 ~--~~~~~~~~~~v~~l~~~~~~~l-~s~~~d--g--~i~vwd~~~~~~~~~~~~~~~-~~~~~~--~v~~l~~~~~~~~ 338 (473)
. .............+.|+.++.| +....+ + .|..+++.... . ... +..+.. .+..+.+. .+.+
T Consensus 309 ~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~--~----~~~~li~~~~~~~l~~~~~~-~~~l 381 (751)
T 2xe4_A 309 NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPS--D----WSHVLVDHSEDVFMESIAVR-SNYL 381 (751)
T ss_dssp CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTT--C----CCCEEECCCSSEEEEEEEEC-SSEE
T ss_pred ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcc--c----ceeeEECCCCCcEEEEEEEE-CCEE
Confidence 2 2222334455566665555644 444433 3 45555553211 1 111 222222 44555555 3345
Q ss_pred EEEeCCCCc--EEEEec
Q 012007 339 VYCGSSDGL--VNFWEC 353 (473)
Q Consensus 339 l~~~~~dg~--i~iwd~ 353 (473)
+++...++. |.++|+
T Consensus 382 v~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 382 VVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCEEEEEEEec
Confidence 566666775 455564
No 266
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.24 E-value=5.1e-05 Score=66.08 Aligned_cols=188 Identities=10% Similarity=0.088 Sum_probs=114.0
Q ss_pred cceeeeeeeccc--EEEEEecCC-EEEEeeCCCcEEEeeCC--ccccccccCcccE--EEEEEeCCCCEEEE-EeCCCeE
Q 012007 114 GLIGSIVRKEGH--IYSLAASGD-LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLV--KAIIISGDSNKIFT-GHQDGKI 185 (473)
Q Consensus 114 ~~~~~l~~h~~~--V~~~~~~g~-~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V--~~l~~s~~~~~l~s-~~~dg~i 185 (473)
..+.++ .|... ...+.++++ +..+.+.+|.|+++|.. +.+..+ - .... ..+++. ++.|+. ...++.+
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEE
T ss_pred EEEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEE
Confidence 334444 45433 467777766 45555667889999965 333333 1 1222 235554 434444 4468899
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
.+||..+.+........ ..-..++ ++++.|+.+..++.|.++|..
T Consensus 119 ~V~D~~Tl~~~~ti~~~---------------------------------~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~ 163 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYS---------------------------------GEGWGLC--YWNGKLVRSDGGTMLTFHEPD 163 (268)
T ss_dssp EEEETTTTEEEEEEECS---------------------------------SCCCCEE--EETTEEEEECSSSEEEEECTT
T ss_pred EEEECCcCcEEEEEeCC---------------------------------CceeEEe--cCCCEEEEECCCCEEEEEcCC
Confidence 99999998876655432 1112333 467888888778999999999
Q ss_pred CCeeeEEeecCC-----CceeEEEEcCCCEEEEEe-CCCcEEEEeCcccCCCcceeeeee-------eccCCccEEEEEE
Q 012007 266 DCKCLESINAHD-----DAINSVVAGFDSLVFTGS-ADGTVKVWRRELQGKGTKHCLAQV-------LLKHENAVTALAV 332 (473)
Q Consensus 266 ~~~~~~~~~~~~-----~~v~~l~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~v~~l~~ 332 (473)
+.+.+..+.... ..++.+.|. ++.|++.. .+..|.+.|.+++.......+... ......-.+.|++
T Consensus 164 T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~ 242 (268)
T 3nok_A 164 GFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAV 242 (268)
T ss_dssp TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEE
T ss_pred CCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEE
Confidence 999888876422 245667776 55555554 578899999875432111111100 0112346789999
Q ss_pred ccCCCEEEEe
Q 012007 333 NQESAVVYCG 342 (473)
Q Consensus 333 ~~~~~~l~~~ 342 (473)
+|+++.|++.
T Consensus 243 dp~~~rlfVT 252 (268)
T 3nok_A 243 EPGSGRIFMT 252 (268)
T ss_dssp CTTTCCEEEE
T ss_pred cCCCCEEEEe
Confidence 9976544444
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.23 E-value=0.003 Score=58.52 Aligned_cols=224 Identities=9% Similarity=0.034 Sum_probs=126.3
Q ss_pred EEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 135 LLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
+|+.+.. ..|+..+... ....+......+..++|++.+..|+... ..+.|..+++..........
T Consensus 46 ~ll~~~~-~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~------------ 112 (349)
T 3v64_C 46 VLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS------------ 112 (349)
T ss_dssp EEEEECB-SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------
T ss_pred eeEeecc-cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe------------
Confidence 4443333 4577766543 2222222334578999997666666554 56789999987654322111
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CE
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SL 290 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~ 290 (473)
........+++.+.+..|+.+ ...+.|.+.++........+.........+++.|. +.
T Consensus 113 --------------------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ 172 (349)
T 3v64_C 113 --------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT 172 (349)
T ss_dssp --------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTE
T ss_pred --------------------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCe
Confidence 012345678888755555444 45678999998654333333334456788999874 55
Q ss_pred EEEE-eCC-CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeecCc
Q 012007 291 VFTG-SAD-GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRGHK 367 (473)
Q Consensus 291 l~s~-~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~ 367 (473)
|+.. ... +.|..+++.... . .......-.....|++++++..|+.+ ...+.|..+|+...... .......
T Consensus 173 ly~td~~~~~~I~r~~~dG~~---~---~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-~~~~~~~ 245 (349)
T 3v64_C 173 IYWTDWGNTPRIEASSMDGSG---R---RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQGL 245 (349)
T ss_dssp EEEEECSSSCEEEEEETTSCS---C---EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSC
T ss_pred EEEeccCCCCEEEEEeCCCCC---c---EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-EEEeCCC
Confidence 4444 334 678777765211 1 11111223457899999866655554 55678999998753221 1222112
Q ss_pred ceEEEEE-ecCCEEEEEeCCCcEEEEecCCCC
Q 012007 368 MAVLCLA-AAGNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 368 ~~v~~~~-~~~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
.....++ ..+.++++-...+.|..++..++.
T Consensus 246 ~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 246 PHPFAITVFEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp SSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCceEEEEECCEEEEecCCCCeEEEEEccCCC
Confidence 2223333 345555555567788888855543
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.22 E-value=0.00048 Score=71.05 Aligned_cols=196 Identities=9% Similarity=0.035 Sum_probs=109.0
Q ss_pred cEEEEEEe-CCCCEEEEEeC-CC----eEEEEeCCCC-CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 163 LVKAIIIS-GDSNKIFTGHQ-DG----KIRIWKVSRK-NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 163 ~V~~l~~s-~~~~~l~s~~~-dg----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
.+...+|| |||++||-+.. +| .|+++|+.++ +.... . -.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~---------------------------------~~ 220 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K---------------------------------VS 220 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C---------------------------------EE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c---------------------------------cc
Confidence 68889999 99998875443 33 4999999887 52110 0 00
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-----CCEEEEEcCCCee--eEEee-cCCCceeEEEEcCCC-EEEEEe-C--CCcEEEE
Q 012007 236 DAVSCLSLNAEQGLLYSGSWD-----KTLKVWRISDCKC--LESIN-AHDDAINSVVAGFDS-LVFTGS-A--DGTVKVW 303 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~--~~~~~-~~~~~v~~l~~~~~~-~l~s~~-~--dg~i~vw 303 (473)
.....+.|+||++.|+....| ..|+++++.+++. ...+. ........+.|++++ +|+..+ . ...|.++
T Consensus 221 ~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~ 300 (751)
T 2xe4_A 221 GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLL 300 (751)
T ss_dssp EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEE
Confidence 113467899999888777655 2588888877542 22222 223456678899998 444333 2 3457777
Q ss_pred eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC----CcEEEEecCCcccccc-eeec-CcceEEEEEecC
Q 012007 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD----GLVNFWECEKHLSHGG-VLRG-HKMAVLCLAAAG 377 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~-~~~~-~~~~v~~~~~~~ 377 (473)
|+..... .................+.|+.++.+++....+ ..|..+|+.+...... .+.. ....+..+++.+
T Consensus 301 d~~~~~~--~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~ 378 (751)
T 2xe4_A 301 DLRKGNA--HNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS 378 (751)
T ss_dssp ESSSCTT--CCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECS
T ss_pred ECCCCCC--CceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEEC
Confidence 8764211 110011222234445556655555555555444 3566677654212122 2222 222456677766
Q ss_pred CE-EEEEeCCCcEE--EEec
Q 012007 378 NL-VFSGSADRNIC--LWRR 394 (473)
Q Consensus 378 ~~-l~s~~~dg~i~--iwd~ 394 (473)
+. +++...++..+ ++++
T Consensus 379 ~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 379 NYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp SEEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEEEeCCEEEEEEEec
Confidence 55 45566677544 5554
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.21 E-value=6.4e-05 Score=76.39 Aligned_cols=239 Identities=11% Similarity=0.065 Sum_probs=127.2
Q ss_pred EEEEeC-CCCEEEEEeCCC-----------eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 166 AIIISG-DSNKIFTGHQDG-----------KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 166 ~l~~s~-~~~~l~s~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
++++.+ +++.++.|+.+. .+.+||..+++........ ..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-----------------------------~~ 240 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-----------------------------TK 240 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-----------------------------CS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-----------------------------CC
Confidence 566777 788888887643 5788998877543221110 01
Q ss_pred ccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCCCeeeEEeecCCC-ceeEEEEcCCC-EEEEEe-CC-----CcEEEEe
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINAHDD-AINSVVAGFDS-LVFTGS-AD-----GTVKVWR 304 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~-~v~~l~~~~~~-~l~s~~-~d-----g~i~vwd 304 (473)
+.....++++..++.+++.|+. +..+.+||..+.+-...-..+.. .-.+++..+++ +++.|+ .+ ..+.+||
T Consensus 241 ~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 241 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred CCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeC
Confidence 3333445777889999999984 45799999987654332221211 11234455455 666666 34 5689999
Q ss_pred CcccCCCcceeee-----eeeccCCccEEEEEEccCCCEEEEeCCC---------CcEEEEecCCcccccceeecC----
Q 012007 305 RELQGKGTKHCLA-----QVLLKHENAVTALAVNQESAVVYCGSSD---------GLVNFWECEKHLSHGGVLRGH---- 366 (473)
Q Consensus 305 ~~~~~~~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~---- 366 (473)
.... ..... ..+..... ...+..++..++.|+.+ ..+..||..+..... ....+
T Consensus 321 ~~t~----~W~~~~~~~~~p~~~~~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~-~~~~~~~~~ 392 (656)
T 1k3i_A 321 PSSK----TWTSLPNAKVNPMLTADK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-SAGKRQSNR 392 (656)
T ss_dssp TTTT----EEEEETTSCSGGGCCCCT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-EEEECEETT
T ss_pred CCCC----cceeCCCccccccccccc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee-cCCcccccc
Confidence 8632 11111 00000000 01122344444445444 356778876543111 11111
Q ss_pred -------cceEEEEE-ecCCEEEEEeCCC-----------cEEEEecCCCCceeEEEEecCCCCc-eeEEEEecCCCCCc
Q 012007 367 -------KMAVLCLA-AAGNLVFSGSADR-----------NICLWRREESGAHSCLAVLTGHTGP-VKCLAVEEDRDHDH 426 (473)
Q Consensus 367 -------~~~v~~~~-~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~~ 426 (473)
......+. .++++++.|+.++ .|.+||..+. .+..+..-..+... -.+++..++++
T Consensus 393 ~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~-~W~~~~~~~mp~~R~~~~~~~l~~g~--- 468 (656)
T 1k3i_A 393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS-PNTVFASNGLYFARTFHTSVVLPDGS--- 468 (656)
T ss_dssp EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC-CEEEECTTCCSSCCBSCEEEECTTSC---
T ss_pred ccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC-CeeEEccCCCCCCcccCCeEECCCCC---
Confidence 11112222 3678888888543 5778887762 22222200112222 24456677887
Q ss_pred ccccCCCccEEEEEeeCC-----------CcEEEEEcCCC
Q 012007 427 EYHQKGDQRWTVYSGSLD-----------KSVKVWRVSEH 455 (473)
Q Consensus 427 ~~~~~~~~~~~l~s~s~D-----------g~v~iW~i~~~ 455 (473)
+++.||.+ ..+.+||....
T Consensus 469 ----------i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 469 ----------TFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp ----------EEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred ----------EEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 88888865 46889998654
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.21 E-value=0.0021 Score=60.49 Aligned_cols=225 Identities=9% Similarity=0.033 Sum_probs=127.2
Q ss_pred CEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 134 DLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
.+|+.+.. ..|+..+... ....+......+..++|.+.+..|+.. ...+.|..+++...........
T Consensus 88 ~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~---------- 156 (386)
T 3v65_B 88 PVLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST---------- 156 (386)
T ss_dssp CEEEEECB-SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS----------
T ss_pred ceeEeecC-ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC----------
Confidence 34444433 5677777653 222333334568899999766566554 4567899999876542221110
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-C
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-S 289 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~ 289 (473)
.......+++.+.+..|+.+ ...+.|.+.++........+.........+++.|. +
T Consensus 157 ----------------------~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g 214 (386)
T 3v65_B 157 ----------------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG 214 (386)
T ss_dssp ----------------------SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred ----------------------CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC
Confidence 12234568888755555544 45677888887644333333334456788999875 4
Q ss_pred EEEEEe-CC-CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecCCcccccceeecC
Q 012007 290 LVFTGS-AD-GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHLSHGGVLRGH 366 (473)
Q Consensus 290 ~l~s~~-~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~ 366 (473)
.|+... .. +.|..+++.... ........-.....|+++|++..|+. -...+.|..+|+...... ......
T Consensus 215 ~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~ 287 (386)
T 3v65_B 215 TIYWTDWGNTPRIEASSMDGSG------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQG 287 (386)
T ss_dssp EEEEEECSSSCEEEEEETTSCS------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE-EEECSS
T ss_pred eEEEeccCCCCEEEEEeCCCCC------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE-EEEECC
Confidence 554443 33 677777765211 11111222345789999986655554 455678999998753221 122212
Q ss_pred cceEEEEEec-CCEEEEEeCCCcEEEEecCCCC
Q 012007 367 KMAVLCLAAA-GNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 367 ~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
......++.+ +.++++-...+.|..++..++.
T Consensus 288 ~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 288 LPHPFAITVFEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp CSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCceEEEEECCEEEEeeCCCCeEEEEECCCCc
Confidence 2223334434 5555566667889888865543
No 271
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.21 E-value=0.0014 Score=59.11 Aligned_cols=209 Identities=8% Similarity=0.064 Sum_probs=121.5
Q ss_pred ccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 162 GLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
.--.+++|.+....|+.++ ..|.|..|+...+..... ......... .....+..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g------------------------~~~~~~sG 67 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNG------------------------DGEQQMSG 67 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSS------------------------CCSEEEEE
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccC------------------------CCcceeeE
Confidence 3446788988666666666 689999999976543322 211100000 01113478
Q ss_pred EEE---cCCCCEEEEEe-------------CCCCEEEEEcC---CCeeeEEeec-------------CCCceeEEEEcCC
Q 012007 241 LSL---NAEQGLLYSGS-------------WDKTLKVWRIS---DCKCLESINA-------------HDDAINSVVAGFD 288 (473)
Q Consensus 241 l~~---~~~~~~l~s~s-------------~dg~v~vwd~~---~~~~~~~~~~-------------~~~~v~~l~~~~~ 288 (473)
|.| .+++.++++.. .+..|..+|+. +++.+..... -....+.++..++
T Consensus 68 l~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~ 147 (334)
T 2p9w_A 68 LSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD 147 (334)
T ss_dssp EEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT
T ss_pred EEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC
Confidence 999 68876666543 15779999999 7877665541 1124788999988
Q ss_pred C-EEEEEeCC-CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee--
Q 012007 289 S-LVFTGSAD-GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR-- 364 (473)
Q Consensus 289 ~-~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 364 (473)
| ..++++.. +.|..++.... ..................+.|+++|++..|++....|.|..+|+.+.........
T Consensus 148 GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~ 226 (334)
T 2p9w_A 148 GNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKIN 226 (334)
T ss_dssp SCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEES
T ss_pred CCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeeccccc
Confidence 8 55557766 77666665411 0000000000111223467899999999888887799999999885322001111
Q ss_pred c------CcceEEEEEecCCE-EEEEeCCCcEEEEecCC
Q 012007 365 G------HKMAVLCLAAAGNL-VFSGSADRNICLWRREE 396 (473)
Q Consensus 365 ~------~~~~v~~~~~~~~~-l~s~~~dg~i~iwd~~~ 396 (473)
+ ....+.....+|+. |++....+.+.+.+.+.
T Consensus 227 G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 227 GDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp SCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred CCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 1 11222333457887 55555566666666554
No 272
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.20 E-value=0.0035 Score=57.47 Aligned_cols=270 Identities=6% Similarity=-0.023 Sum_probs=137.1
Q ss_pred ccEEEEEec--CCEEEEeeCCCcEEEeeC-Cccccc--c--ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCee
Q 012007 124 GHIYSLAAS--GDLLYTGSDSKNIRVWKN-LKEFSG--F--KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNAS 196 (473)
Q Consensus 124 ~~V~~~~~~--g~~l~tg~~dg~i~vwd~-~~~~~~--~--~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 196 (473)
..+.++.+. +..++ .+.+|.|..... .+.-.. . ......+.+|.|.+ + .++.++.+|.|.. ..+.++.
T Consensus 36 ~~~~~v~~~~~~~~~~-~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG~t- 110 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWL-VGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGGQS- 110 (327)
T ss_dssp SCEEEEEESSSSCEEE-EETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTTSS-
T ss_pred CcEEEEEECCCCcEEE-EcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCCCC-
Confidence 457788774 45555 455676544321 111111 1 12345789999986 3 4444566665443 2222221
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe-ec
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI-NA 275 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~ 275 (473)
-...... . .+...+..+.+.+++..++++ .++.|.. ....++.-..+ ..
T Consensus 111 W~~~~~~-~---------------------------~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~ 160 (327)
T 2xbg_A 111 WSQIPLD-P---------------------------KLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQE 160 (327)
T ss_dssp CEECCCC-T---------------------------TCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECS
T ss_pred ceECccc-c---------------------------CCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecC
Confidence 1110000 0 012235566666666555544 4565432 11223322222 23
Q ss_pred CCCceeEEEEcCCCEEEEEeCCCcEEEE-eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 276 HDDAINSVVAGFDSLVFTGSADGTVKVW-RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 276 ~~~~v~~l~~~~~~~l~s~~~dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
....+..+.+.+++.++..+.+|.+..- |- ++ ...... .......+..+++.+++.+++.+ .+|.+++.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG--~tW~~~--~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D 233 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQ--TAWEPH--NRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPD 233 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECT--TC--SSCEEE--ECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETT
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CC--CceeEC--CCCCCCccceeEECCCCCEEEEe-CCceEEEecCC
Confidence 4457888899888855555566655433 31 01 112211 12345678899999988766554 57888777422
Q ss_pred Ccccccceeec---CcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccc
Q 012007 355 KHLSHGGVLRG---HKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYH 429 (473)
Q Consensus 355 ~~~~~~~~~~~---~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~ 429 (473)
.+..-...... +...+.++.+ ++.+++++ .+|.| ++..+.+..+..+.....+...+.++.|.+++
T Consensus 234 ~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~------- 304 (327)
T 2xbg_A 234 NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD------- 304 (327)
T ss_dssp EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-------
T ss_pred CCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-------
Confidence 11111111111 2223555554 45555554 47766 45555544454443222334568899997654
Q ss_pred cCCCccEEEEEeeCCCcEEEEE
Q 012007 430 QKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 430 ~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
.++.++.+|.|.-++
T Consensus 305 -------~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 305 -------QGFILGQKGILLRYV 319 (327)
T ss_dssp -------EEEEECSTTEEEEEC
T ss_pred -------ceEEEcCCceEEEEc
Confidence 466777899776665
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.20 E-value=0.0036 Score=58.00 Aligned_cols=196 Identities=10% Similarity=0.047 Sum_probs=114.3
Q ss_pred CCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 236 DAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
..+..++|++....|+... ..+.|..+++........+.........+++.+ .+ ++++-...+.|.+.++....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 149 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 149 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---
Confidence 4578899998666666554 567899999876554333333334557788875 34 44555667889999876221
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEe-CCC-CcEEEEecCCcccccceeec--CcceEEEEEecCCEEEEE-eCCC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCG-SSD-GLVNFWECEKHLSHGGVLRG--HKMAVLCLAAAGNLVFSG-SADR 387 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d-g~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~-~~dg 387 (473)
..............++++|.+..|+.. ..+ +.|..+++...... ..... ....-+++++++..|+.+ ...+
T Consensus 150 ---~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~~~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 150 ---RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp ---CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-ESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ---eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-EEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence 111122333567899999966555544 444 78888887653221 11111 112335566655555544 4567
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.|..+++..... ..+ +........+|++. .+. ++++-...+.|...+..++
T Consensus 226 ~I~~~~~dG~~~-~~~--~~~~~~~P~giav~-~~~-------------ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 226 VIERANLDGSHR-KAV--ISQGLPHPFAITVF-EDS-------------LYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEEEEETTSCSC-EEE--ECSSCSSEEEEEEE-TTE-------------EEEEETTTTEEEEEETTTC
T ss_pred EEEEEeCCCCce-EEE--EeCCCCCceEEEEE-CCE-------------EEEecCCCCeEEEEEccCC
Confidence 899999876322 222 22223445778884 333 5666656777777774443
No 274
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.19 E-value=0.00033 Score=60.44 Aligned_cols=191 Identities=8% Similarity=0.078 Sum_probs=113.8
Q ss_pred cceeeeeeeccc--EEEEEecCCEEEEe-eCC--CcEEEeeCC--ccccccccCcccE--EEEEEeCCCCEEEE-EeCCC
Q 012007 114 GLIGSIVRKEGH--IYSLAASGDLLYTG-SDS--KNIRVWKNL--KEFSGFKSNSGLV--KAIIISGDSNKIFT-GHQDG 183 (473)
Q Consensus 114 ~~~~~l~~h~~~--V~~~~~~g~~l~tg-~~d--g~i~vwd~~--~~~~~~~~h~~~V--~~l~~s~~~~~l~s-~~~dg 183 (473)
..+.++ .|... .-.+.+++..|+.+ +.+ ..|+++|.. +.+....-. ... ..+++. ++.|+. .-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~-~~~fgeGi~~~--~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVP-PPYFGAGIVAW--RDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECC-TTCCEEEEEEE--TTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCC-CCcceeEEEEe--CCEEEEEEeeCC
Confidence 344454 56543 55788886655554 443 389999976 233333221 122 234443 445544 44688
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEE
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd 263 (473)
.+.+||..+.+........ ..-..++ +++..|+.+..++.|.++|
T Consensus 86 ~v~v~D~~tl~~~~ti~~~---------------------------------~~Gwglt--~dg~~L~vSdgs~~l~~iD 130 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP---------------------------------GEGWALT--SDDSHLYMSDGTAVIRKLD 130 (243)
T ss_dssp EEEEEETTTTEEEEEEECS---------------------------------SCCCEEE--ECSSCEEEECSSSEEEEEC
T ss_pred EEEEEECCcCcEEEEEeCC---------------------------------CCceEEe--eCCCEEEEECCCCeEEEEe
Confidence 9999999988766655432 1113344 4667777777788999999
Q ss_pred cCCCeeeEEeecCC-----CceeEEEEcCCCEEEEEe-CCCcEEEEeCcccCCCcceeeeeee-------ccCCccEEEE
Q 012007 264 ISDCKCLESINAHD-----DAINSVVAGFDSLVFTGS-ADGTVKVWRRELQGKGTKHCLAQVL-------LKHENAVTAL 330 (473)
Q Consensus 264 ~~~~~~~~~~~~~~-----~~v~~l~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~v~~l 330 (473)
..+.+.+..+.... ..++.+.+. ++.+++.. .+..|.+.|.+++.......+.... .....-.+.|
T Consensus 131 p~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGI 209 (243)
T 3mbr_X 131 PDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGI 209 (243)
T ss_dssp TTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEE
T ss_pred CCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEE
Confidence 99999888876432 345667765 55455444 5778999998754321111111000 1123457899
Q ss_pred EEccCCCEEEEeCC
Q 012007 331 AVNQESAVVYCGSS 344 (473)
Q Consensus 331 ~~~~~~~~l~~~~~ 344 (473)
+++|+++.|++.+.
T Consensus 210 A~d~~~~~lfVTGK 223 (243)
T 3mbr_X 210 AFDAEHDRLFVTGK 223 (243)
T ss_dssp EEETTTTEEEEEET
T ss_pred EEcCCCCEEEEECC
Confidence 99998766655543
No 275
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.18 E-value=0.0017 Score=59.55 Aligned_cols=230 Identities=9% Similarity=0.005 Sum_probs=119.0
Q ss_pred ccEEEEEecCCEEEEeeCCCcEEEeeC-Cccccc---cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 124 GHIYSLAASGDLLYTGSDSKNIRVWKN-LKEFSG---FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 124 ~~V~~~~~~g~~l~tg~~dg~i~vwd~-~~~~~~---~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
..+.++.++++.++.++.+|.|..-+- .+.-.. ...+.+.+..|.+.+++..++.+ .+|.|.. ..+.++. -..
T Consensus 80 ~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t-W~~ 156 (327)
T 2xbg_A 80 YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN-WQA 156 (327)
T ss_dssp CEEEEEEEETTEEEEEEETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS-EEE
T ss_pred ccEEEEEecCCeEEEEECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC-CEE
Confidence 356677776555555566675544321 121111 11234557788887777555554 4554422 1112221 111
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEE-EEc--CCCeeeEEeecC
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV-WRI--SDCKCLESINAH 276 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~v-wd~--~~~~~~~~~~~~ 276 (473)
... .....+..+.+.+++.+++.+. +|.+.. +|- .+.+.+. ...
T Consensus 157 ~~~------------------------------~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~ 203 (327)
T 2xbg_A 157 LVQ------------------------------EAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTT 203 (327)
T ss_dssp EEC------------------------------SCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCS
T ss_pred eec------------------------------CCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCC
Confidence 100 1344678899999888776665 455444 332 2333332 234
Q ss_pred CCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeee-ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC
Q 012007 277 DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVL-LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 277 ~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
...+..+.+.+++.++.++.+|.+.+.+...+ ......... ......+.++++.+++.+++++. +|.|. +....
T Consensus 204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~Dg 278 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDG 278 (327)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESST
T ss_pred CCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCC
Confidence 56788888888887777778888877642211 111111111 11234588999998888777665 56663 33332
Q ss_pred cccccceee--cCcceEEEEEe-cCCEEEEEeCCCcEEEEec
Q 012007 356 HLSHGGVLR--GHKMAVLCLAA-AGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 356 ~~~~~~~~~--~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~ 394 (473)
+..-..... .....+.++.+ ++..+++++.+|.|.-++-
T Consensus 279 G~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 279 GQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp TSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred CcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 221111110 11222333433 4556777778998776653
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.15 E-value=0.0021 Score=56.15 Aligned_cols=187 Identities=9% Similarity=0.023 Sum_probs=114.2
Q ss_pred ccCCeeEEEEcCCCCEEE-EEeCCCCEEEEEcCCCeeeEEeecC-CCceeEEEEcCCCEE-EEEeCCCcEEEEeCcccCC
Q 012007 234 HYDAVSCLSLNAEQGLLY-SGSWDKTLKVWRISDCKCLESINAH-DDAINSVVAGFDSLV-FTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~l-~s~~~dg~i~vwd~~~~~~ 310 (473)
-.+.+..++|+|+++.|+ +...++.|...|.. ++.++.+... ......|++.+++.+ ++.-.++.+.++++.....
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 445799999999776555 46778889999987 8888877532 246778888888855 4444677888888764331
Q ss_pred Ccceeeee-e--eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc--ccccceee---------cCcceEEEEEec
Q 012007 311 GTKHCLAQ-V--LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH--LSHGGVLR---------GHKMAVLCLAAA 376 (473)
Q Consensus 311 ~~~~~~~~-~--~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~---------~~~~~v~~~~~~ 376 (473)
........ . ....+.....|+|+|.++.|+++.......+|.+... ........ -......++.+.
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 00001111 0 1234566799999999877777766555556555410 00011110 112233444444
Q ss_pred -CCEEEEEeCCCcEEEEecCCCCceeEEEEec-CCC------CceeEEEEecCCC
Q 012007 377 -GNLVFSGSADRNICLWRREESGAHSCLAVLT-GHT------GPVKCLAVEEDRD 423 (473)
Q Consensus 377 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h~------~~V~~l~~~~~~~ 423 (473)
+.+++.....+.|.++|... . ......+. +.. ..--.|+|.+++.
T Consensus 184 tg~lliLS~~s~~L~~~d~~g-~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 184 KNTLLVLSHESRALQEVTLVG-E-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp TTEEEEEETTTTEEEEECTTC-C-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred CCeEEEEECCCCeEEEEcCCC-C-EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 66777777788899999775 2 22223333 221 2458899999987
No 277
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.13 E-value=0.00043 Score=68.90 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=23.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEee
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRV 201 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 201 (473)
+..|+.++.|+.|..+|..+++..-....
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 44788889999999999999987765543
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.13 E-value=0.0061 Score=57.57 Aligned_cols=226 Identities=13% Similarity=0.077 Sum_probs=130.1
Q ss_pred EEEEeeCCCcEEEeeCCcc-ccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCe--eeEEeecccccccee
Q 012007 135 LLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNA--SVHKRVGSLPTFKDY 210 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~ 210 (473)
+|+.+.. ..|+..++... ...+......+..|+|++.+..|+-.. ..+.|+.+++..... .....+.
T Consensus 85 ~ll~~~~-~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-------- 155 (400)
T 3p5b_L 85 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------- 155 (400)
T ss_dssp EEEEEET-TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--------
T ss_pred eeEEecc-ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--------
Confidence 4444443 56777775532 233333456788999998766666554 467888888865321 0000000
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE-EeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS-GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD- 288 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~- 288 (473)
........|++.+.+..|+. -...+.|.+.++........+.........|++.|.
T Consensus 156 ----------------------~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~ 213 (400)
T 3p5b_L 156 ----------------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 213 (400)
T ss_dssp ----------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTT
T ss_pred ----------------------CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEeccc
Confidence 12345678899885444544 456678999998755444444444456788999874
Q ss_pred CEEEEEeC--CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeec
Q 012007 289 SLVFTGSA--DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRG 365 (473)
Q Consensus 289 ~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 365 (473)
+.|+.... .+.|...++.... . .......-.....|++++++..|+.+ ...+.|..+|+...... .....
T Consensus 214 g~ly~td~~~~~~I~~~~~dG~~---~---~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~ 286 (400)
T 3p5b_L 214 GFMYWTDWGTPAKIKKGGLNGVD---I---YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILED 286 (400)
T ss_dssp TEEEEEECSSSCCEEEEETTSCS---C---EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-EEEEC
T ss_pred CeEEEEeCCCCCEEEEEeCCCCc---c---EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-EEEeC
Confidence 55555442 3678888775211 1 11112233567899999877666655 45678999998753222 22221
Q ss_pred --CcceEEEEEecC-CEEEEEeCCCcEEEEecCCCC
Q 012007 366 --HKMAVLCLAAAG-NLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 366 --~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~ 398 (473)
.......++.++ .++++-...+.|..++..++.
T Consensus 287 ~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 287 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp SSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCC
T ss_pred CCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCC
Confidence 122334555554 455555666889999866643
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.11 E-value=0.0037 Score=58.75 Aligned_cols=197 Identities=11% Similarity=0.065 Sum_probs=114.4
Q ss_pred cCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-C-EEEEEeCCCcEEEEeCcccCCC
Q 012007 235 YDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
...+..++|++.+..|+.. ...+.|..+++........+.........+++.+. + ++++-...+.|.+.++....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-- 192 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-- 192 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS--
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc--
Confidence 3457889999866655555 45678999998766544433333344567777753 4 44555567788888775211
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeC-CC-CcEEEEecCCcccccceeecCc--ceEEEEEecCCEEEE-EeCC
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SD-GLVNFWECEKHLSHGGVLRGHK--MAVLCLAAAGNLVFS-GSAD 386 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~s-~~~d 386 (473)
..............|+++|.+..|+... .+ +.|..+++...... ......- ..-+++++++..|+. -...
T Consensus 193 ----~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~~~~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 193 ----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp ----CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred ----eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EEEECCCCCeeeEEEeCCCCEEEEEECCC
Confidence 1111222335678999998766555543 34 67888887653221 1111111 233566655555544 4556
Q ss_pred CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
+.|..+++..... ..+ +........+|++.. +. ++++-...+.|..++..++
T Consensus 268 ~~I~~~d~dG~~~-~~~--~~~~~~~P~giav~~-~~-------------ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 268 HVIERANLDGSHR-KAV--ISQGLPHPFAITVFE-DS-------------LYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp TEEEEECTTSCSC-EEE--ECSSCSSEEEEEEET-TE-------------EEEEETTTTEEEEEETTTC
T ss_pred CEEEEEeCCCCee-EEE--EECCCCCceEEEEEC-CE-------------EEEeeCCCCeEEEEECCCC
Confidence 7899999875322 212 222234457788843 33 5666666778888875444
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.09 E-value=0.0021 Score=61.45 Aligned_cols=153 Identities=3% Similarity=-0.012 Sum_probs=86.8
Q ss_pred cEEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 163 LVKAIIISGD--SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 163 ~V~~l~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
....|+|+++ +..|+.+...+.|+.+|..++...... ........
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~---------------------------------~~~~~P~g 186 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT---------------------------------TNIGQCAD 186 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC---------------------------------CCCSCEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee---------------------------------cCCCCccE
Confidence 4578999984 445666555588999998766532211 12345789
Q ss_pred EEEcCCCCEEEEEeCCC----C-EEEEEcCCCee-eEEeecCCCceeEEEEcC-CCEEEEE-eCCCcEEEEeCcccCCCc
Q 012007 241 LSLNAEQGLLYSGSWDK----T-LKVWRISDCKC-LESINAHDDAINSVVAGF-DSLVFTG-SADGTVKVWRRELQGKGT 312 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg----~-v~vwd~~~~~~-~~~~~~~~~~v~~l~~~~-~~~l~s~-~~dg~i~vwd~~~~~~~~ 312 (473)
|+++++++ |+.+...+ . +...+...+.. ...+. .......+++.+ ++.|+.+ ..++.|+.+|...+..
T Consensus 187 iavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~-- 262 (433)
T 4hw6_A 187 VNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL-- 262 (433)
T ss_dssp EEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE--
T ss_pred EEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE--
Confidence 99999999 55555422 1 33333221111 01111 223456678888 6655544 4567888888752211
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEE-EEeCCCCcEEEEecC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVV-YCGSSDGLVNFWECE 354 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~iwd~~ 354 (473)
...+ .. ......-..|+|+|++++| ++-...+.|+.+++.
T Consensus 263 ~~~~-~~-~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 263 TEEE-VM-MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEE-EE-CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred EEEE-ec-cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 0011 11 1112223479999999854 455567889998765
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.04 E-value=0.0052 Score=55.97 Aligned_cols=219 Identities=9% Similarity=0.021 Sum_probs=124.6
Q ss_pred CcEEEeeCCcc---ccccccCcccEEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCc
Q 012007 143 KNIRVWKNLKE---FSGFKSNSGLVKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK 218 (473)
Q Consensus 143 g~i~vwd~~~~---~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (473)
..|+..++... ..........+.+++|.+.+..|+-+ ...+.|..++............
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~----------------- 75 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV----------------- 75 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE-----------------
T ss_pred CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc-----------------
Confidence 46777776532 11122223456789999865555544 4567888888876532111100
Q ss_pred ceEEEeecceeeEeeccCCeeEEEEcCCCCEEE-EEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CEEEEEeC
Q 012007 219 NYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA 296 (473)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~ 296 (473)
........+++.+.+..|+ +-...+.|.++++........+.........+++.|. +.|+....
T Consensus 76 --------------~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~ 141 (318)
T 3sov_A 76 --------------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW 141 (318)
T ss_dssp --------------ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEEC
T ss_pred --------------CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 1223456788887555454 4445678999998654332223344456788898875 56655543
Q ss_pred --CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeecCcceEEEE
Q 012007 297 --DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRGHKMAVLCL 373 (473)
Q Consensus 297 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 373 (473)
.+.|...++.... .. ......-.....|++++++..|+.+ ...+.|..+|+..... .....+.......+
T Consensus 142 ~~~~~I~r~~~dG~~---~~---~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~gl 214 (318)
T 3sov_A 142 GEVPKIERAGMDGSS---RF---IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFAL 214 (318)
T ss_dssp SSSCEEEEEETTSCS---CE---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEE
T ss_pred CCCCEEEEEEcCCCC---eE---EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEE
Confidence 5677777765211 11 1111223456899999966655554 5567899999874222 11222222233444
Q ss_pred EecC-CEEEEEeCCCcEEEEecCCCCc
Q 012007 374 AAAG-NLVFSGSADRNICLWRREESGA 399 (473)
Q Consensus 374 ~~~~-~~l~s~~~dg~i~iwd~~~~~~ 399 (473)
+.++ .++++-...+.|..++..++..
T Consensus 215 av~~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 215 TLFEDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEeCCEEEEEecCCCeEEEEECCCCCc
Confidence 5454 4455555668899999876443
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.02 E-value=0.0078 Score=54.79 Aligned_cols=218 Identities=12% Similarity=0.067 Sum_probs=123.1
Q ss_pred CcEEEeeCCcc-ccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCC---CeeeEEeeccccccceeEeecCCC
Q 012007 143 KNIRVWKNLKE-FSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRK---NASVHKRVGSLPTFKDYVKSSVNP 217 (473)
Q Consensus 143 g~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 217 (473)
..|+..|+... ...+......+..++|++++..|+.+. .++.|..+++... ...... ..
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~-~~--------------- 73 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-IS--------------- 73 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-EC---------------
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-Ee---------------
Confidence 45777775532 222223345678999998766665554 4688999988752 110000 00
Q ss_pred cceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CCEEEEEe
Q 012007 218 KNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DSLVFTGS 295 (473)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~ 295 (473)
........+++++.+..|+.+ ...+.|.+.++........+.........+++.| ++.|+...
T Consensus 74 ---------------~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d 138 (316)
T 1ijq_A 74 ---------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 138 (316)
T ss_dssp ---------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred ---------------CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEc
Confidence 012345788898755555544 5678899999865433333333445678899987 45555544
Q ss_pred CC--CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeec--CcceE
Q 012007 296 AD--GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRG--HKMAV 370 (473)
Q Consensus 296 ~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~--~~~~v 370 (473)
.. +.|...++... ... ......-.....|++++++..|+.+ ...+.|..+|+..... ...... .....
T Consensus 139 ~~~~~~I~~~~~dG~----~~~--~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P 211 (316)
T 1ijq_A 139 WGTPAKIKKGGLNGV----DIY--SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHP 211 (316)
T ss_dssp CSSSCEEEEEETTSC----CEE--EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSE
T ss_pred cCCCCeEEEEcCCCC----CeE--EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCc
Confidence 43 67877776421 111 1111233567899999876665554 4567899999875322 112221 11222
Q ss_pred EEEEec-CCEEEEEeCCCcEEEEecCCCC
Q 012007 371 LCLAAA-GNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 371 ~~~~~~-~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
..++.+ +.++++-...+.|..++..++.
T Consensus 212 ~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 212 FSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 344444 4455555567789999876643
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.97 E-value=0.0097 Score=54.18 Aligned_cols=200 Identities=11% Similarity=0.049 Sum_probs=114.1
Q ss_pred cCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCC----CeeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcc
Q 012007 235 YDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISD----CKCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~----~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~ 307 (473)
......++|++.++.|+.+. .++.|..+++.. ......+.........+++.+ ++ ++++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34577899998766665554 568899999875 222222332334567888864 44 445556678999998752
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-C-CcEEEEecCCcccccceeec--CcceEEEEEecCCEEEEE
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-D-GLVNFWECEKHLSHGGVLRG--HKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~ 383 (473)
.. . .............++++|.+..|+.+.. . +.|..+++...... ..... ....-+++++++..|+.+
T Consensus 109 ~~---~---~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~-~~~~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 109 VK---R---KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp SS---E---EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSCSCEEEEEEETTTTEEEEE
T ss_pred Cc---e---EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE-EEEECCCCCceEEEEeccCCEEEEE
Confidence 11 1 1111223356789999996665555443 2 68888887643221 11111 122235566656655554
Q ss_pred -eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 384 -SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 384 -~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
...+.|..+|+.... ...+............|++.. +. ++++-...+.|..++..++.
T Consensus 182 D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~~-------------ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 182 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DK-------------VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp ETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-TE-------------EEEEETTTTEEEEEETTTCC
T ss_pred ECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC-CE-------------EEEEECCCCeEEEEeCCCCc
Confidence 456789999987532 233332222223456788753 33 56666667788888865543
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.0039 Score=59.55 Aligned_cols=147 Identities=8% Similarity=0.003 Sum_probs=87.7
Q ss_pred EEEe-cCCEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEeCC-C----eEEEEeCCCCCeeeEEe
Q 012007 128 SLAA-SGDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGHQD-G----KIRIWKVSRKNASVHKR 200 (473)
Q Consensus 128 ~~~~-~g~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g----~i~vwd~~~~~~~~~~~ 200 (473)
++.+ ++..|+.+...+.|+.+|... .+..+.........|+|++++++|+.+... + .+.+.+. .+.......
T Consensus 143 avdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~ 221 (430)
T 3tc9_A 143 SFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITE 221 (430)
T ss_dssp EEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEE
T ss_pred EECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeee
Confidence 4444 244555555547888888763 344444455668899999999967666542 1 2222332 221110000
Q ss_pred eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeec-CCC
Q 012007 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINA-HDD 278 (473)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~ 278 (473)
+........++++| ++.++++-..++.|..++...+........ ...
T Consensus 222 -------------------------------l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 222 -------------------------------LTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp -------------------------------EEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred -------------------------------eccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 00223456788999 666555555678899999987664332222 223
Q ss_pred ceeEEEEcCCC--EEEEEeCCCcEEEEeCc
Q 012007 279 AINSVVAGFDS--LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 279 ~v~~l~~~~~~--~l~s~~~dg~i~vwd~~ 306 (473)
....+++++++ ++++-...+.|..++..
T Consensus 271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 56789999988 34444567889888765
No 285
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.94 E-value=0.011 Score=54.66 Aligned_cols=226 Identities=15% Similarity=0.118 Sum_probs=115.4
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
.-..|+|.|+|++++ +..+|.|++++ .++......+. . ..........|+
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~---v------------------------~~~g~~~p~gia 81 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELS---V------------------------YHRGESGLLGLA 81 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECC---C------------------------CCSTTCSEEEEE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecce---E------------------------eecCCCCceeEE
Confidence 467999999998555 46779999998 33221111110 0 001234678899
Q ss_pred EcCC---CCEEEEEeCC------CCEEEEEcCCCe-----ee-EEee---cCCCceeEEEEcCCCEEEEEeCC-------
Q 012007 243 LNAE---QGLLYSGSWD------KTLKVWRISDCK-----CL-ESIN---AHDDAINSVVAGFDSLVFTGSAD------- 297 (473)
Q Consensus 243 ~~~~---~~~l~s~s~d------g~v~vwd~~~~~-----~~-~~~~---~~~~~v~~l~~~~~~~l~s~~~d------- 297 (473)
|+|+ +..|+++... +.|..++...+. .+ ..+. ........+++.+++.|+.+..+
T Consensus 82 ~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~ 161 (352)
T 2ism_A 82 LHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELA 161 (352)
T ss_dssp ECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGG
T ss_pred ECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccc
Confidence 9998 6666665532 568888876431 11 2233 11123468899999955554322
Q ss_pred -------CcEEEEeCcccCCCcc---------eeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCc--------EEEEe
Q 012007 298 -------GTVKVWRRELQGKGTK---------HCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGL--------VNFWE 352 (473)
Q Consensus 298 -------g~i~vwd~~~~~~~~~---------~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~--------i~iwd 352 (473)
|.|.-++.. +.... ........++ .....++|+| ++.++++-..... |.+..
T Consensus 162 ~d~~~~~g~I~ri~~d--G~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~ 238 (352)
T 2ism_A 162 QDLASLGGKILRLTPE--GEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV 238 (352)
T ss_dssp GCTTCSSSEEEEECTT--SSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC
T ss_pred cCCCCCceEEEEEcCC--CCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec
Confidence 445555543 11000 0011111222 2356789999 5665554332222 44332
Q ss_pred cCCc---------------ccccceeecCcceEEEEE-ecCCEEEEEeCCCcEEEEecCCCCc----eeEEEEecCCCCc
Q 012007 353 CEKH---------------LSHGGVLRGHKMAVLCLA-AAGNLVFSGSADRNICLWRREESGA----HSCLAVLTGHTGP 412 (473)
Q Consensus 353 ~~~~---------------~~~~~~~~~~~~~v~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~ 412 (473)
.... ......+..|. ....+. ++|.++++.-..+.|...++..... ......+. -...
T Consensus 239 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~-ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~~~r 316 (352)
T 2ism_A 239 PGGNYGWPRVVGRGNDPRYRDPLYFWPQGF-PPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-GFGR 316 (352)
T ss_dssp TTCBCCTTTCCSCCCCTTSCCCSEECTTCC-CEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-SSCC
T ss_pred cCCcCCCCcccCCCCCCCCcCCeEecCCCC-CCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-cCCC
Confidence 1110 01111111222 222333 5677776666677788887765321 01111222 2357
Q ss_pred eeEEEEecCCC
Q 012007 413 VKCLAVEEDRD 423 (473)
Q Consensus 413 V~~l~~~~~~~ 423 (473)
+..+++.||+.
T Consensus 317 p~~v~~~pdG~ 327 (352)
T 2ism_A 317 LREVQVGPDGA 327 (352)
T ss_dssp EEEEEECTTSC
T ss_pred eeEEEECCCCc
Confidence 89999999987
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=0.015 Score=55.91 Aligned_cols=251 Identities=8% Similarity=-0.009 Sum_probs=137.3
Q ss_pred cEEEEEEeC-CCCEEEEEeC-CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 163 LVKAIIISG-DSNKIFTGHQ-DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 163 ~V~~l~~s~-~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
....|+|.| ++..|+.+.. .+.|++.|+..+.......... ........
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~-----------------------------~~~~~p~~ 190 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT-----------------------------IPTNRIRS 190 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT-----------------------------SSCSBEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc-----------------------------cccCCCcE
Confidence 356899998 3445555544 4678888888766543322110 02235788
Q ss_pred EEE-------cCCCCEEEEEeCCC-C------EEEEEcCC-Ceee-----EEeecCCCceeEEEEcCC-C-EEEEEeCCC
Q 012007 241 LSL-------NAEQGLLYSGSWDK-T------LKVWRISD-CKCL-----ESINAHDDAINSVVAGFD-S-LVFTGSADG 298 (473)
Q Consensus 241 l~~-------~~~~~~l~s~s~dg-~------v~vwd~~~-~~~~-----~~~~~~~~~v~~l~~~~~-~-~l~s~~~dg 298 (473)
|+| +++++.|+++...+ . |.+++... +... ..+... .....++++|+ + ++++-..++
T Consensus 191 ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g 269 (496)
T 3kya_A 191 IAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKG 269 (496)
T ss_dssp EEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTT
T ss_pred EEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCC
Confidence 999 99999777777654 2 66665333 2221 122211 23456777884 4 455666778
Q ss_pred cEEEEeCc-------ccCCCc----c----eeeeeeeccCCccEEEEEEccCCCEEE-EeCCCCcEEEEecCCcc-cc--
Q 012007 299 TVKVWRRE-------LQGKGT----K----HCLAQVLLKHENAVTALAVNQESAVVY-CGSSDGLVNFWECEKHL-SH-- 359 (473)
Q Consensus 299 ~i~vwd~~-------~~~~~~----~----~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~-~~-- 359 (473)
.|..+|+. .+.... . ..... ..........|+|+|++++|+ +-.....|+.++..... .+
T Consensus 270 ~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~-~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~ 348 (496)
T 3kya_A 270 QVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF-TIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFIT 348 (496)
T ss_dssp EEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE-ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECC
T ss_pred EEEEEecccccccccCceeecccccccccccceeE-ecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecc
Confidence 89999986 221100 0 00111 112234568999999999544 44567788886654211 00
Q ss_pred cceeecC------------------cceEEEEE-------ecCCEEEEEeCCCcEEEEecCCCCceeEEEEe--------
Q 012007 360 GGVLRGH------------------KMAVLCLA-------AAGNLVFSGSADRNICLWRREESGAHSCLAVL-------- 406 (473)
Q Consensus 360 ~~~~~~~------------------~~~v~~~~-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------- 406 (473)
...+.+. .....++. .++.++++=.....|+.++... . ...+.-.
T Consensus 349 ~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G-~-v~TiaG~g~~~~~~~ 426 (496)
T 3kya_A 349 PYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG-I-VSTYAGRGASTSLAD 426 (496)
T ss_dssp CEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC-B-EEEEEESCTTHHHHH
T ss_pred cEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC-C-EEEEecccccccccC
Confidence 0111111 11123343 3456666666778899988432 1 1111110
Q ss_pred ---cCC----------CCceeEEEEecC-CCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 407 ---TGH----------TGPVKCLAVEED-RDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 407 ---~~h----------~~~V~~l~~~~~-~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
.+. -.....|++.++ +. ++++=...+.|+.+++.......
T Consensus 427 ~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~-------------lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 427 GNQWGTDDGDLREVARFRDVSGLVYDDVKEM-------------FYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp SCSCCCCCEETTTTCCCSSEEEEEEETTTTE-------------EEEEETTTTEEEEEEECCCC---
T ss_pred ccccccCCCCchhhhhcCCCcEEEEECCCCE-------------EEEEeCCCCEEEEEECCCCcccc
Confidence 011 123568899886 54 55555567889999987665433
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.86 E-value=0.019 Score=54.10 Aligned_cols=201 Identities=11% Similarity=0.049 Sum_probs=116.7
Q ss_pred ccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCC----eeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDC----KCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~----~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~ 306 (473)
....+..|+|++.+..|+.+. ..+.|+.+++... .....+.........+++.. .+ ++++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 445678999998666666664 5677888888652 22233333445667888875 44 45555667889888875
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC--CCcEEEEecCCcccccceeecC--cceEEEEEecCCEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS--DGLVNFWECEKHLSHGGVLRGH--KMAVLCLAAAGNLVFS 382 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~s 382 (473)
... ..............|+++|.+.+|+.... .+.|...++...... ...... ...-+++++++..|+.
T Consensus 190 g~~------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~-~~~~~~l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 190 GVK------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp TCS------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEE
T ss_pred CCc------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE-EEEECCCCceEEEEEEeCCCEEEE
Confidence 211 11112223445789999997666655542 478888888753222 122211 2223556655666655
Q ss_pred E-eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 383 G-SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 383 ~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+ ...+.|..+|++.... ..+....+......+|++..+ . ++++-...+.|..++..++.
T Consensus 263 aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~~~-~-------------lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-K-------------VFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEETT-E-------------EEEEESSSCSEEEEESSSCC
T ss_pred EECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEeCC-E-------------EEEecCCCCeEEEEEcCCCC
Confidence 5 4567899999876332 223222222334457777433 2 56666667788888865554
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.85 E-value=0.03 Score=57.59 Aligned_cols=226 Identities=14% Similarity=0.081 Sum_probs=128.6
Q ss_pred EEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCe--eeEEeecccccccee
Q 012007 135 LLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNA--SVHKRVGSLPTFKDY 210 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~ 210 (473)
+|+.+. ...|+..++.. ....+......+..|+|.+.+..|+.. ...+.|+.+++..... .....+.
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-------- 467 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------- 467 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--------
T ss_pred cccccc-ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--------
Confidence 343333 34677776542 233333345667899999865555544 4467888888865321 0000000
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD- 288 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~- 288 (473)
........|++.+.+..|+.+ ...+.|.+.++........+.........|++.+.
T Consensus 468 ----------------------~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 468 ----------------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 525 (791)
T ss_dssp ----------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT
T ss_pred ----------------------cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCC
Confidence 123456678998877655555 45678999998754443334444456889999876
Q ss_pred CEEEEEeC--CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeec
Q 012007 289 SLVFTGSA--DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRG 365 (473)
Q Consensus 289 ~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 365 (473)
+.|+.... .+.|...++.... ........-.....|++++.+..|+.+ ...+.|..+++...... .+...
T Consensus 526 g~LYwtD~g~~~~I~~~~~dG~~------~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-~v~~~ 598 (791)
T 3m0c_C 526 GFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILED 598 (791)
T ss_dssp TEEEEEECSSSCEEEEEETTSCC------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEEC
T ss_pred CCEEEecCCCCCeEEEEecCCCc------eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-EEecC
Confidence 56655543 2677777765211 111222233568899999876666555 45568999998753322 22222
Q ss_pred --CcceEEEEEecCCEEEEE-eCCCcEEEEecCCCC
Q 012007 366 --HKMAVLCLAAAGNLVFSG-SADRNICLWRREESG 398 (473)
Q Consensus 366 --~~~~v~~~~~~~~~l~s~-~~dg~i~iwd~~~~~ 398 (473)
.-.....++..+..|+.. ...+.|...+..++.
T Consensus 599 ~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 599 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp TTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCc
Confidence 122334566565555555 455778888876643
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.84 E-value=0.0083 Score=57.28 Aligned_cols=188 Identities=8% Similarity=0.015 Sum_probs=105.5
Q ss_pred CEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCC----e-EEEEeCCCCCeeeEEeecccccc
Q 012007 134 DLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG----K-IRIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg----~-i~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
..|+.+...+.|+.+|.. ..+..+.........|+++++|+ |+.+...+ . +...+...... ..
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~-~~--------- 221 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFT-ER--------- 221 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTC-CE---------
T ss_pred CEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCee-cc---------
Confidence 455555444889999873 44555544556689999999999 55444322 1 22222111100 00
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEe-ec-CCCceeEEE
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESI-NA-HDDAINSVV 284 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~-~~~~v~~l~ 284 (473)
...........+++++ ++.+.++-..++.|+.+|..++.....+ .. ....-..++
T Consensus 222 ----------------------~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia 279 (433)
T 4hw6_A 222 ----------------------LSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIV 279 (433)
T ss_dssp ----------------------EEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEE
T ss_pred ----------------------ccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEE
Confidence 0001233456688999 5655555556778999998877653332 21 122234699
Q ss_pred EcCCC-EEE-EEeCCCcEEEEeCcccCCCc--ceeeeee-----------eccCCccEEEEEE---------ccCCCEEE
Q 012007 285 AGFDS-LVF-TGSADGTVKVWRRELQGKGT--KHCLAQV-----------LLKHENAVTALAV---------NQESAVVY 340 (473)
Q Consensus 285 ~~~~~-~l~-s~~~dg~i~vwd~~~~~~~~--~~~~~~~-----------~~~~~~~v~~l~~---------~~~~~~l~ 340 (473)
+++++ .|+ +-...+.|..++........ ....... ....-.....+++ .+++.+++
T Consensus 280 ~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyv 359 (433)
T 4hw6_A 280 WHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYF 359 (433)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEE
T ss_pred EeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEE
Confidence 99987 344 44556789888765211100 0000000 0011234677999 67777777
Q ss_pred EeCCCCcEEEEecC
Q 012007 341 CGSSDGLVNFWECE 354 (473)
Q Consensus 341 ~~~~dg~i~iwd~~ 354 (473)
+-...+.|+.++..
T Consensus 360 aD~~n~~I~~~~~~ 373 (433)
T 4hw6_A 360 CDRDSHTVRVLTPE 373 (433)
T ss_dssp EETTTTEEEEECTT
T ss_pred EECCCCEEEEECCC
Confidence 77778889999853
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.83 E-value=0.018 Score=52.43 Aligned_cols=196 Identities=10% Similarity=0.073 Sum_probs=114.7
Q ss_pred CeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeee-EEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 237 AVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCL-ESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~-~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
....++|++.+..|+.. ...+.|..+++...... ..+.........+++.+ .+ ++++-...+.|.++++....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 112 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--- 112 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---
Confidence 45688999865555554 45678999998765321 22222234566777775 44 44555667889999876211
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeC--CCCcEEEEecCCcccccceeec--CcceEEEEEecCCEEEEE-eCCC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGS--SDGLVNFWECEKHLSHGGVLRG--HKMAVLCLAAAGNLVFSG-SADR 387 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~-~~dg 387 (473)
. .............++++|.+..|+... ..+.|..+++...... ..... ....-+++++++..|+.+ ...+
T Consensus 113 ~---~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~~~l~~Pnglavd~~~~~lY~aD~~~~ 188 (318)
T 3sov_A 113 R---KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-IIINSEIYWPNGLTLDYEEQKLYWADAKLN 188 (318)
T ss_dssp C---EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred E---EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-EEEECCCCCccEEEEeccCCEEEEEECCCC
Confidence 1 111223345678999999766665554 3578888887643221 11111 112335666655555544 4567
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.|..+++..... ..+. .+......++++..+ . ++++-...+.|..++..+++
T Consensus 189 ~I~~~d~dG~~~-~~~~--~~~~~~P~glav~~~-~-------------lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 189 FIHKSNLDGTNR-QAVV--KGSLPHPFALTLFED-I-------------LYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEEEETTSCSC-EEEE--CSCCSCEEEEEEETT-E-------------EEEEETTTTEEEEEETTTCC
T ss_pred EEEEEcCCCCce-EEEe--cCCCCCceEEEEeCC-E-------------EEEEecCCCeEEEEECCCCC
Confidence 899999875322 2222 223344577777543 2 56666667888888886554
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.77 E-value=0.0075 Score=54.86 Aligned_cols=194 Identities=14% Similarity=0.178 Sum_probs=113.2
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC----C----EEEEEeC---CCcEEEEeCcccCCCcce
Q 012007 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD----S----LVFTGSA---DGTVKVWRRELQGKGTKH 314 (473)
Q Consensus 246 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~----~----~l~s~~~---dg~i~vwd~~~~~~~~~~ 314 (473)
...+++....++-+.+||+ +|+.++.+.. +.++.+..-++ + ++++... +++|.+|++..... ..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~--~l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG--TL 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC--CE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC--ce
Confidence 4456676777888999999 8999988864 45666665543 1 2333333 57899997742111 11
Q ss_pred eeeee----eccCCccEEEEEE--ccC-CC-EEEEeCCCCcEEEEecCC---c----ccccceeecCcceEEEEEecCCE
Q 012007 315 CLAQV----LLKHENAVTALAV--NQE-SA-VVYCGSSDGLVNFWECEK---H----LSHGGVLRGHKMAVLCLAAAGNL 379 (473)
Q Consensus 315 ~~~~~----~~~~~~~v~~l~~--~~~-~~-~l~~~~~dg~i~iwd~~~---~----~~~~~~~~~~~~~v~~~~~~~~~ 379 (473)
..... +......+..+++ ++. +. ++++...+|.+..|++.. + +.......+....-+.+......
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR 193 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence 11100 0011145666777 664 43 688888999999998832 1 11212222333333344455789
Q ss_pred EEEEeCCCcEEEEecCCCC--ceeEEEEec-CC-CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 380 VFSGSADRNICLWRREESG--AHSCLAVLT-GH-TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~--~~~~~~~~~-~h-~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
|+.+-++..|..++.+... ....+..+. ++ ...+..|++-+... ...++|+++=.+.++.+|+..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~---------g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD---------GKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG---------GCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC---------CCEEEEEEcCCCCEEEEEECC
Confidence 9999998666556644211 234555542 32 23688888854321 112356666567899999986
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.70 E-value=0.014 Score=53.17 Aligned_cols=192 Identities=11% Similarity=0.206 Sum_probs=109.6
Q ss_pred CCEEEEeeCCCcEEEeeCCcc-ccccccCcccEEEEEEeCC----CC---EEEEEe-C--CCeEEEEeCCCCCeeeEEee
Q 012007 133 GDLLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIISGD----SN---KIFTGH-Q--DGKIRIWKVSRKNASVHKRV 201 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~----~~---~l~s~~-~--dg~i~vwd~~~~~~~~~~~~ 201 (473)
..+++.....+-+.|||+... +..+. .+.++.+..-|+ |+ ++++.. . +++|.+|++...... ...+
T Consensus 40 ~s~ii~t~k~~gL~Vydl~G~~l~~~~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLDGKMLHSYN--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEETTSCEEEEEC--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred ccEEEEEcCCCCEEEEcCCCcEEEEcc--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence 345555556678999998633 33332 256677666553 22 223333 3 578999977422211 1111
Q ss_pred ccc--cccceeEeecCCCcceEEEeecceeeEeec-cCCeeEEEE--cCC-CC-EEEEEeCCCCEEEEEcC-------CC
Q 012007 202 GSL--PTFKDYVKSSVNPKNYVEVRRNRSVLKIRH-YDAVSCLSL--NAE-QG-LLYSGSWDKTLKVWRIS-------DC 267 (473)
Q Consensus 202 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~--~~~-~~-~l~s~s~dg~v~vwd~~-------~~ 267 (473)
... +. +. ...+..+++ ++. +. ++++...+|.+..|++. +.
T Consensus 117 ~~~~~pv--------------------------~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~ 170 (355)
T 3amr_A 117 TDPDHPI--------------------------ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISG 170 (355)
T ss_dssp SCTTSCE--------------------------ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEE
T ss_pred cccccCc--------------------------CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccc
Confidence 100 00 01 144556666 664 43 68888889999999983 34
Q ss_pred eeeEEeecCCCceeEEEEcCC-CEEEEEeCCCcEEEEeCcccCCCcceeeeeee-ccC-CccEEEEEEc--cCCC-EEEE
Q 012007 268 KCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVL-LKH-ENAVTALAVN--QESA-VVYC 341 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~-~~~v~~l~~~--~~~~-~l~~ 341 (473)
+.++++... ..+..+...+. +.|+.+-.+..|..++.+.... .....+... .++ ...+..|++- ++++ +|++
T Consensus 171 ~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLiv 248 (355)
T 3amr_A 171 KKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMA 248 (355)
T ss_dssp EEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEE
T ss_pred eEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEEEEE
Confidence 667777754 45666666654 5999999986665555442221 111222222 122 2468888884 4555 5555
Q ss_pred eC-CCCcEEEEecCC
Q 012007 342 GS-SDGLVNFWECEK 355 (473)
Q Consensus 342 ~~-~dg~i~iwd~~~ 355 (473)
++ .+..+.+||.+.
T Consensus 249 SsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 249 SSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEGGGTEEEEEESST
T ss_pred EcCCCCEEEEEECCC
Confidence 54 577999999863
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.68 E-value=0.054 Score=55.66 Aligned_cols=200 Identities=12% Similarity=0.044 Sum_probs=112.1
Q ss_pred ccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCC----eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDC----KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~----~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~ 306 (473)
....+..|+|++....|+.+. ..+.|+.+++... .....+.........|++...+ ++++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 345677899998655555554 5577888888642 2233333344556778877554 55566667889999886
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC--CCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS--DGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFS 382 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s 382 (473)
... ..............|+++|.+.+|+.... .+.|...++...... ......-... +++.+.+..|+.
T Consensus 502 G~~------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~lv~~~l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 502 GVK------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSS------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSCSCEEEEEEETTTTEEEE
T ss_pred CCe------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-EEEeCCCCCceEEEEecCCCeEEE
Confidence 211 11112233455889999997666655542 367888888753322 2222222233 455555555555
Q ss_pred E-eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 383 G-SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 383 ~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
+ ...+.|..+++........+ .-.+.-....+|++..+ . ++++-...+.|...+...+
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~-~~~~~l~~P~glav~~~-~-------------lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTIL-EDEKRLAHPFSLAVFED-K-------------VFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEE-ECTTTTSSEEEEEEETT-E-------------EEEEETTTTEEEEEETTTC
T ss_pred EeCCCCcEEEEecCCCceEEEe-cCCCccCCCCEEEEeCC-E-------------EEEEECCCCEEEEEeCCCC
Confidence 5 45568999998764322222 21122223456666443 2 5555555677777765544
No 294
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.61 E-value=0.042 Score=50.76 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=30.6
Q ss_pred cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 376 AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 376 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+|.++++.-..+.|...++..+........+......+..|++.|++.
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 467777777778888888775321111112223235789999999987
No 295
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.58 E-value=0.012 Score=53.06 Aligned_cols=187 Identities=8% Similarity=0.118 Sum_probs=93.6
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCe-----eeEEeecCCCceeEEEEcCCCEEEEEeCC-----CcEEEEeCcccCC
Q 012007 246 EQGLLYSGSWD-----KTLKVWRISDCK-----CLESINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGK 310 (473)
Q Consensus 246 ~~~~l~s~s~d-----g~v~vwd~~~~~-----~~~~~~~~~~~v~~l~~~~~~~l~s~~~d-----g~i~vwd~~~~~~ 310 (473)
++.+++.|+.+ ..+.+||+.+.+ .+..+........++.. .+.+++.|+.+ ..+.+||+...
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~-- 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNID-- 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT--
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCC--
Confidence 45666777654 468999987754 23222222222222222 33355566543 35778887532
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-----CcEEEEecCCccccc-ceeecCcceEEEEEecCCEEEEEe
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-----GLVNFWECEKHLSHG-GVLRGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~l~s~~ 384 (473)
.......+.........+.+ ++++++.|+.+ ..+.+||+.+..-.. ..+........+...++.+++.|+
T Consensus 139 --~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 214 (301)
T 2vpj_A 139 --QWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGG 214 (301)
T ss_dssp --EEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred --eEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeC
Confidence 22222222211222222222 56777777654 458889986532110 111111112233445778888887
Q ss_pred CC-----CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC-----CcEEEEEcCC
Q 012007 385 AD-----RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD-----KSVKVWRVSE 454 (473)
Q Consensus 385 ~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D-----g~v~iW~i~~ 454 (473)
.+ ..+.+||+.+ ..+..+..+.........+.+ ++. +++.|+.+ ..|.+||+.+
T Consensus 215 ~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~~~~~~~--~~~-------------i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 215 FDGTAHLSSVEAYNIRT-DSWTTVTSMTTPRCYVGATVL--RGR-------------LYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp BCSSSBCCCEEEEETTT-TEEEEECCCSSCCBSCEEEEE--TTE-------------EEEECCBCSSSBEEEEEEEETTT
T ss_pred CCCCcccceEEEEeCCC-CcEEECCCCCCcccceeEEEE--CCE-------------EEEEcCcCCCcccccEEEEcCCC
Confidence 64 4689999987 334444333221111122222 343 67777765 3567777765
Q ss_pred C
Q 012007 455 H 455 (473)
Q Consensus 455 ~ 455 (473)
.
T Consensus 279 ~ 279 (301)
T 2vpj_A 279 D 279 (301)
T ss_dssp T
T ss_pred C
Confidence 3
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.57 E-value=0.016 Score=52.22 Aligned_cols=160 Identities=6% Similarity=0.026 Sum_probs=99.9
Q ss_pred CCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEE-eec----C--CCceeEEEE---cCCCEEEEEeC--------
Q 012007 236 DAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLES-INA----H--DDAINSVVA---GFDSLVFTGSA-------- 296 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~-~~~----~--~~~v~~l~~---~~~~~l~s~~~-------- 296 (473)
-.-.+++|++....|+.++ ..++|..||...+..... +.. . ...+..|.+ .+++.|+++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 3446789998777777777 789999999975543333 221 1 113578899 57775544333
Q ss_pred ------CCcEEEEeCc---ccCCCcceeeeeeecc-------CCccEEEEEEccCCCEEEEeCCC-CcEEEEecCCcccc
Q 012007 297 ------DGTVKVWRRE---LQGKGTKHCLAQVLLK-------HENAVTALAVNQESAVVYCGSSD-GLVNFWECEKHLSH 359 (473)
Q Consensus 297 ------dg~i~vwd~~---~~~~~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~ 359 (473)
+..|..||+. ++.......+.....+ -......++..++|+..++++.. +.|...+..... .
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~ 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-V 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-E
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-E
Confidence 6779999987 3322111111000111 12358899999999998888877 777777765431 1
Q ss_pred cceeec-------CcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 360 GGVLRG-------HKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 360 ~~~~~~-------~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
...... ....-+.+.++|+.|++...+|.|..+|+..
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 111110 1122356778899888887799999999885
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.56 E-value=0.00082 Score=68.50 Aligned_cols=240 Identities=12% Similarity=0.057 Sum_probs=124.7
Q ss_pred CcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcce
Q 012007 143 KNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNY 220 (473)
Q Consensus 143 g~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (473)
+.|++.++.. ....+......+..|+|.+.+..|+.+. ..+.|+.+++.......... .
T Consensus 386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~-~------------------ 446 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD-T------------------ 446 (699)
T ss_dssp TC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCC-C------------------
T ss_pred cceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceE-E------------------
Confidence 4666666542 2222222334567899998776776654 45788888887521000000 0
Q ss_pred EEEeecceeeEeeccCCeeEEEEcCCCCEEE-EEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CEEEEEeC--
Q 012007 221 VEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA-- 296 (473)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~-- 296 (473)
...........|++.+.+..|+ +-...+.|.++++........+.........|++.|. +.|+....
T Consensus 447 ---------~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~ 517 (699)
T 1n7d_A 447 ---------VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT 517 (699)
T ss_dssp ---------BCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS
T ss_pred ---------EEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCC
Confidence 0000112244577775444444 4445678999998654433333333345677888875 45544432
Q ss_pred CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccccceee--cCcceEEEE
Q 012007 297 DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSHGGVLR--GHKMAVLCL 373 (473)
Q Consensus 297 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~ 373 (473)
.+.|.++++.... .. ......-.....|+|+|++ .++++-...+.|..+++...... .+.. ........+
T Consensus 518 ~~~I~~~~~dG~~---~~---~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~~~P~gl 590 (699)
T 1n7d_A 518 PAKIKKGGLNGVD---IY---SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSL 590 (699)
T ss_dssp SCCEEBCCSSSCC---CC---EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EECCCSSSCSSCCCC
T ss_pred CCeEEEEeCCCCC---ee---EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEEecCCcCCCceEe
Confidence 2677777664211 11 1111122345789999875 45555566778999998642221 1111 111112333
Q ss_pred EecCC-EEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 374 AAAGN-LVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 374 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
+.++. ++++....+.|..++..+ ...+..+.......+.|++..
T Consensus 591 avd~~~lywtd~~~~~V~~~d~~~---G~~~~~i~~~~~~P~~i~v~~ 635 (699)
T 1n7d_A 591 AVFEDKVFWTDIINEAIFSANRLT---GSDVNLLAENLLSPEDMVLFH 635 (699)
T ss_dssp EEETTEEEEECSTTTCEEEEETTT---EEEEECCCTTCSSCCCCCBCS
T ss_pred EEECCEEEEEeCCCCeEEEEEccC---CCceEEeecCCCCCcEEEEeC
Confidence 44444 444555668899999876 344555543333345555443
No 298
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.54 E-value=0.11 Score=53.59 Aligned_cols=254 Identities=11% Similarity=0.175 Sum_probs=140.3
Q ss_pred cccEEEEEec-CCEEEEeeCCCcEEEeeCCcc--cccc-ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 123 EGHIYSLAAS-GDLLYTGSDSKNIRVWKNLKE--FSGF-KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 123 ~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~~--~~~~-~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
...|.++..| ..+|..|..+| +..||-.+. .... ......|.++....+| .|..|+.+| +..||..+.....
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~- 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ- 96 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC-
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC-
Confidence 4568899887 34677777777 556664321 1111 1124568998888776 666677665 7789987653211
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee----
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN---- 274 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~---- 274 (473)
. .. .....|.++.. .+ ..|..++.+ -|..+|..+++......
T Consensus 97 -~-~~-----------------------------~~~~~i~~i~~-~~-g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~ 142 (758)
T 3ott_A 97 -P-ET-----------------------------DFPTDVRTMAL-QG-DTLWLGALN-GLYTYQLQSRKLTSFDTRRNG 142 (758)
T ss_dssp -C-SC-----------------------------CCCSCEEEEEE-ET-TEEEEEETT-EEEEEETTTCCEEEECHHHHC
T ss_pred -c-cc-----------------------------CCCceEEEEEe-cC-CcEEEEcCC-cceeEeCCCCeEEEeccCCCC
Confidence 0 00 01224666654 34 457777766 58889987655432201
Q ss_pred cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec---cCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL---KHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
.....|.++....++.|..|+.+ -|..++..... ........ .....|.++....++..|..|+. +-+..+
T Consensus 143 l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~ 216 (758)
T 3ott_A 143 LPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGK----FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQY 216 (758)
T ss_dssp CSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTE----EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEE
T ss_pred cCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCc----eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEE
Confidence 12356888888777866667765 46677764211 00000000 01234888888877776666664 457888
Q ss_pred ecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEec-----CCCCceeEEEEecCCC
Q 012007 352 ECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLT-----GHTGPVKCLAVEEDRD 423 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~h~~~V~~l~~~~~~~ 423 (473)
|..+.... .........|.++..+ ...|..|+. +-+.+++..+.. ...+.... -....|.++....++.
T Consensus 217 ~~~~~~~~-~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~ 291 (758)
T 3ott_A 217 FPSTGQIK-QTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTP-LQHIIHDSRNIQSLTNNIIWNIFADQEHN 291 (758)
T ss_dssp ETTTTEEE-EEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSC-CEEECCCTTCTTSCSCSCEEEEEECTTCC
T ss_pred cCCCCeEE-eccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCc-EEEEEcCCCCcCcCCcCeEEEEEEcCCCC
Confidence 87653221 1111123346677665 345556664 458888876532 11111100 1123588888777665
No 299
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.53 E-value=0.036 Score=49.81 Aligned_cols=150 Identities=10% Similarity=0.094 Sum_probs=75.8
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC-----CcEEEEeCcccCCCcc
Q 012007 246 EQGLLYSGSWD-----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKGTK 313 (473)
Q Consensus 246 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~ 313 (473)
++.+++.|+.+ ..+.+||+.+.+-.. .+......- +++...+.+++.|+.+ ..+.+||+... .
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~----~ 186 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVVASGVIYCLGGYDGLNILNSVEKYDPHTG----H 186 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEEETTEEEEECCBCSSCBCCCEEEEETTTT----E
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEEECCEEEEECCCCCCcccceEEEEeCCCC----c
Confidence 55666666643 358899987765332 222211112 2222233355666654 45888887632 2
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCC-----CcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeCC-
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSD-----GLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSAD- 386 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~d- 386 (473)
......+.........+.+ ++.+++.|+.+ ..+.+||+.+..-. ...+........+...++++++.|+.+
T Consensus 187 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 187 WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCC
Confidence 2222222211222222333 56777777764 46889998753211 111111111223344578888888765
Q ss_pred ----CcEEEEecCCCCceeEE
Q 012007 387 ----RNICLWRREESGAHSCL 403 (473)
Q Consensus 387 ----g~i~iwd~~~~~~~~~~ 403 (473)
..|.+||..+ ..+..+
T Consensus 265 ~~~~~~v~~yd~~~-~~W~~~ 284 (301)
T 2vpj_A 265 NSLLSSIECYDPII-DSWEVV 284 (301)
T ss_dssp SSBEEEEEEEETTT-TEEEEE
T ss_pred CcccccEEEEcCCC-CeEEEc
Confidence 3578888876 334444
No 300
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.49 E-value=0.031 Score=50.25 Aligned_cols=187 Identities=11% Similarity=0.097 Sum_probs=92.7
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCCC-----cEEEEeCcccCCCcc
Q 012007 246 EQGLLYSGSWD-----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSADG-----TVKVWRRELQGKGTK 313 (473)
Q Consensus 246 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~ 313 (473)
++.+++.|+.+ ..+.+||..+.+-.. .+....... +++...+.+++.|+.++ .+.+||+... .
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~----~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSN----E 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEEEEECSSCEEEEEEEEETTTT----E
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEEECCEEEEEcCCCCCccCceEEEEeCCCC----e
Confidence 55666666644 358899988765322 222111122 22222334556666553 4667777532 2
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCC-------CcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeC
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSD-------GLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
......+.........+.+ ++++++.|+.+ ..+.+||+.+..-. ...+........+...++.+++.|+.
T Consensus 136 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 213 (302)
T 2xn4_A 136 WFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGH 213 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred EeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCC
Confidence 2222222211222222222 56677776643 35888998753211 01111111122334457888888876
Q ss_pred C-----CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCC-----cEEEEEcCCC
Q 012007 386 D-----RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDK-----SVKVWRVSEH 455 (473)
Q Consensus 386 d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg-----~v~iW~i~~~ 455 (473)
+ ..+.+||..+ ..+..+..+...... .+++.. ++. +++.|+.++ .|.+||+.+.
T Consensus 214 ~~~~~~~~~~~yd~~~-~~W~~~~~~~~~r~~-~~~~~~-~~~-------------i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 214 DGPLVRKSVEVYDPTT-NAWRQVADMNMCRRN-AGVCAV-NGL-------------LYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSSSBCCCEEEEETTT-TEEEEECCCSSCCBS-CEEEEE-TTE-------------EEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCcccceEEEEeCCC-CCEeeCCCCCCcccc-CeEEEE-CCE-------------EEEECCcCCCcccccEEEEcCCCC
Confidence 5 3688999887 334444333211111 122222 333 677777654 4888888754
No 301
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.49 E-value=0.17 Score=54.48 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=109.0
Q ss_pred CCEEEEEcCCCeeeEEeec-CCCceeEEE---EcCC--CEEEEEe----------CCCcEEEEeCcccCCCcceeeeeee
Q 012007 257 KTLKVWRISDCKCLESINA-HDDAINSVV---AGFD--SLVFTGS----------ADGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 257 g~v~vwd~~~~~~~~~~~~-~~~~v~~l~---~~~~--~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
+.|++.|..+.+.+..+.- ....+.+++ +..+ .++++|+ ..|.|.+|++.. .+..+. ..
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~----~kL~lv-~~ 881 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD----GKLQTV-AE 881 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET----TEEEEE-EE
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC----CEEEEE-EE
Confidence 3578888888877766543 233455554 2222 3777776 357899999861 122222 22
Q ss_pred ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc-ceEEEEEecCCEEEEEeCCCcEEEEecCCCCc
Q 012007 321 LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK-MAVLCLAAAGNLVFSGSADRNICLWRREESGA 399 (473)
Q Consensus 321 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 399 (473)
...+++|++++-- +|++|++. ..+|++|++.....+........ ..+..+...++++++|..-..|.++..+....
T Consensus 882 ~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~ 958 (1158)
T 3ei3_A 882 KEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 958 (1158)
T ss_dssp EEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTT
T ss_pred EEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCC
Confidence 3346788888755 34444433 46899999976433221111111 12446667799999999888888876554221
Q ss_pred eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 400 HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 400 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.-....-..+...++++.+-.++ .++.+..+|.|.+.+....
T Consensus 959 ~L~~~a~D~~~~~vta~~~ld~~--------------t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 959 NFEEIARDFNPNWMSAVEILDDD--------------NFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp EEEEEEECCSCBCEEEEEEEETT--------------EEEEEETTSEEEEEEECTT
T ss_pred eEEEEEeecccccEEEEEEEccC--------------cEEEEcCCCcEEEEecCCC
Confidence 11111223456688999998765 5788999999999998764
No 302
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.42 E-value=0.066 Score=48.19 Aligned_cols=154 Identities=9% Similarity=0.095 Sum_probs=78.8
Q ss_pred CCCEEEEEeCC------CCEEEEEcCCCeeeEE--eecCCCceeEEEEcCCCEEEEEeC---------CCcEEEEeCccc
Q 012007 246 EQGLLYSGSWD------KTLKVWRISDCKCLES--INAHDDAINSVVAGFDSLVFTGSA---------DGTVKVWRRELQ 308 (473)
Q Consensus 246 ~~~~l~s~s~d------g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~l~s~~~---------dg~i~vwd~~~~ 308 (473)
++.+++.|+.+ ..+.+||+.+.+-... +......- +++...+.+++.|+. -..+.+||+...
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 56677777655 4589999987653322 22111111 222223335555543 345788888642
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-----CcEEEEecCCccc-ccceeecCcceEEEEEecCCEEEE
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-----GLVNFWECEKHLS-HGGVLRGHKMAVLCLAAAGNLVFS 382 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~l~s 382 (473)
.......+......-..+.+ ++++++.|+.+ ..+.+||+.+..- ....+........+...++.+++.
T Consensus 180 ----~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 253 (306)
T 3ii7_A 180 ----TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVL 253 (306)
T ss_dssp ----EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEE
T ss_pred ----eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEE
Confidence 22222222211122222222 56677777654 3588899875321 111111112222334457888888
Q ss_pred EeCC-----CcEEEEecCCCCceeEEEEec
Q 012007 383 GSAD-----RNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 383 ~~~d-----g~i~iwd~~~~~~~~~~~~~~ 407 (473)
|+.+ ..+.+||..+ ..+..+..+.
T Consensus 254 GG~~~~~~~~~~~~yd~~~-~~W~~~~~~~ 282 (306)
T 3ii7_A 254 AGFQGVGRLGHILEYNTET-DKWVANSKVR 282 (306)
T ss_dssp ECBCSSSBCCEEEEEETTT-TEEEEEEEEE
T ss_pred eCcCCCeeeeeEEEEcCCC-CeEEeCCCcc
Confidence 8854 4688899887 3455555444
No 303
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.38 E-value=0.035 Score=50.01 Aligned_cols=187 Identities=9% Similarity=0.106 Sum_probs=93.4
Q ss_pred CCCEEEEEeCC----CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC------CcEEEEeCcccCCCcc
Q 012007 246 EQGLLYSGSWD----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD------GTVKVWRRELQGKGTK 313 (473)
Q Consensus 246 ~~~~l~s~s~d----g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~ 313 (473)
++.+++.|+.+ ..+.+||+.+.+-.. .+........ ++...+.+++.|+.+ ..+.+||+... .
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~----~ 129 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLA-ACAAEGKIYTSGGSEVGNSALYLFECYDTRTE----S 129 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCE-EEEETTEEEEECCBBTTBSCCCCEEEEETTTT----E
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccccee-EEEECCEEEEECCCCCCCcEeeeEEEEeCCCC----c
Confidence 55666777654 568889988765332 2222111222 222233356666654 45888887632 2
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCC---------CCcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEE
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSS---------DGLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
......+.........+.+ ++++++.|+. -..+.+||+.+..-. ...+........+...++++++.|
T Consensus 130 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 207 (306)
T 3ii7_A 130 WHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVG 207 (306)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred eEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEe
Confidence 2222112111112222222 5666666654 345888998754211 011111111223334477777877
Q ss_pred eCC-----CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC-----CcEEEEEcC
Q 012007 384 SAD-----RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD-----KSVKVWRVS 453 (473)
Q Consensus 384 ~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D-----g~v~iW~i~ 453 (473)
+.+ ..+.+||+.+ ..+..+..+........++.+ ++. +++.|+.+ ..|.+||+.
T Consensus 208 G~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~~~~~--~~~-------------i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 208 GQNGLGGLDNVEYYDIKL-NEWKMVSPMPWKGVTVKCAAV--GSI-------------VYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp CEETTEEBCCEEEEETTT-TEEEECCCCSCCBSCCEEEEE--TTE-------------EEEEECBCSSSBCCEEEEEETT
T ss_pred CCCCCCCCceEEEeeCCC-CcEEECCCCCCCccceeEEEE--CCE-------------EEEEeCcCCCeeeeeEEEEcCC
Confidence 754 3588999887 334444333222222222322 333 77777754 457788876
Q ss_pred CC
Q 012007 454 EH 455 (473)
Q Consensus 454 ~~ 455 (473)
..
T Consensus 272 ~~ 273 (306)
T 3ii7_A 272 TD 273 (306)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 304
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.37 E-value=0.07 Score=48.13 Aligned_cols=152 Identities=9% Similarity=0.097 Sum_probs=76.2
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC-----CcEEEEeCcccCCCcc
Q 012007 246 EQGLLYSGSWD-----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKGTK 313 (473)
Q Consensus 246 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~ 313 (473)
++.+++.|+.+ ..+.+||+.+.+-.. .+......-.+ +...+.+++.|+.+ ..+.+||+... .
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~----~ 195 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGV-AVLNRLLYAVGGFDGTNRLNSAECYYPERN----E 195 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEE-EEETTEEEEECCBCSSCBCCCEEEEETTTT----E
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEE-EEECCEEEEEeCCCCCCcCceEEEEeCCCC----e
Confidence 55666666533 468899987765332 22211112222 22233455666554 45888887632 2
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCC-----CcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeCC-
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSD-----GLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSAD- 386 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~d- 386 (473)
......+.........+.+ ++.+++.|+.+ ..+.+||+.+..-. ...+........+...++++++.|+.+
T Consensus 196 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 196 WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG 273 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence 2222222222222222333 56777777664 46889998753211 111111111223334577888888754
Q ss_pred ----CcEEEEecCCCCceeEEEE
Q 012007 387 ----RNICLWRREESGAHSCLAV 405 (473)
Q Consensus 387 ----g~i~iwd~~~~~~~~~~~~ 405 (473)
..+.+||+.+ ..+..+..
T Consensus 274 ~~~~~~v~~yd~~~-~~W~~~~~ 295 (308)
T 1zgk_A 274 HTFLDSVECYDPDT-DTWSEVTR 295 (308)
T ss_dssp SCBCCEEEEEETTT-TEEEEEEE
T ss_pred CcccceEEEEcCCC-CEEeecCC
Confidence 3577888876 33444433
No 305
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.34 E-value=0.052 Score=48.76 Aligned_cols=144 Identities=13% Similarity=0.143 Sum_probs=72.8
Q ss_pred CCCEEEEEeCCC-----CEEEEEcCCCeeeEE--eecCCCceeEEEEcCCCEEEEEeCC-------CcEEEEeCcccCCC
Q 012007 246 EQGLLYSGSWDK-----TLKVWRISDCKCLES--INAHDDAINSVVAGFDSLVFTGSAD-------GTVKVWRRELQGKG 311 (473)
Q Consensus 246 ~~~~l~s~s~dg-----~v~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~ 311 (473)
++.+++.|+.++ .+.+||+.+.+-... +...... .+++...+.+++.|+.+ ..+.+||+...
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--- 183 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTN--- 183 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCEETTTTEECCCEEEEETTTT---
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCC---
Confidence 566777776553 477888877653322 2211111 12222333355555542 35788887632
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-----CcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeC
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-----GLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
.......+.........+.+ ++.+++.|+.+ ..+.+||+.+..-. ...+........+...++.+++.|+.
T Consensus 184 -~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~ 260 (302)
T 2xn4_A 184 -EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGD 260 (302)
T ss_dssp -EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCc
Confidence 22222222211222222222 56777777664 36889998753211 01111111112234457888888876
Q ss_pred CC-----cEEEEecCC
Q 012007 386 DR-----NICLWRREE 396 (473)
Q Consensus 386 dg-----~i~iwd~~~ 396 (473)
++ .+.+||..+
T Consensus 261 ~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 261 DGSCNLASVEYYNPTT 276 (302)
T ss_dssp CSSSBCCCEEEEETTT
T ss_pred CCCcccccEEEEcCCC
Confidence 54 488899887
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.33 E-value=0.0019 Score=65.85 Aligned_cols=197 Identities=13% Similarity=0.072 Sum_probs=107.9
Q ss_pred CCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCC----CeeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCccc
Q 012007 236 DAVSCLSLNAEQGLLYSGS-WDKTLKVWRISD----CKCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~----~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~ 308 (473)
..+..|+|++.+..|+.+. ..+.|+.+++.. ......+.........|++.+ .+ ++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4566789998777776664 457899999875 222222222222345677663 33 4445456788999987521
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC--CCcEEEEecCCcccccceeec--CcceEEEEEec-CCEEEEE
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS--DGLVNFWECEKHLSHGGVLRG--HKMAVLCLAAA-GNLVFSG 383 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~-~~~l~s~ 383 (473)
. ..............|+++|.+.+|+.... .+.|..+++...... .+... ....-++++++ +.++++-
T Consensus 486 ~------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l~~~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 486 K------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp C------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred c------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EEEeCCCCCccEEEEeccCCEEEEEe
Confidence 1 11111122234577899997655555443 268888887643221 11111 11223556665 4455555
Q ss_pred eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 384 SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 384 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
...+.|.++++.... ...+............|++..+ . ++++....+.|..++..+
T Consensus 559 ~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~-------------lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 559 SKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-K-------------VFWTDIINEAIFSANRLT 614 (699)
T ss_dssp TTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-E-------------EEEECSTTTCEEEEETTT
T ss_pred cCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-E-------------EEEEeCCCCeEEEEEccC
Confidence 567789999987522 2222211111223345666544 2 666766778898888654
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.25 E-value=0.1 Score=46.73 Aligned_cols=197 Identities=12% Similarity=0.135 Sum_probs=127.3
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeee
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
.-.+|..+.+|.-. ..++.++|+++.+.+..+.-. ..|.-=.|-.+..|+..+ +..|.-|++.... .+.+.+
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s-----~P~kvF 143 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGES-----QPVKMF 143 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEEEEEE-SSEEEEEESSTTC-----CCEEEE
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCCeEEEEc-CCcEEEEcccCCC-----CCceee
Confidence 34578777777665 678999999999998888754 456666676666555444 5679999986422 222222
Q ss_pred ccC----CccEEEEEEccCCCEEEEeCC-------CCcEEEEecCCcccccceeecCcceEEEEEecCC-----EEEEEe
Q 012007 321 LKH----ENAVTALAVNQESAVVYCGSS-------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-----LVFSGS 384 (473)
Q Consensus 321 ~~~----~~~v~~l~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~s~~ 384 (473)
..| ...|..-..+++.++++..+- .|.+.+|..+.. ..+.+.||...-..+..+|+ +++-+.
T Consensus 144 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 221 (365)
T 2xzh_A 144 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAV 221 (365)
T ss_dssp ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT--EEEEECCSEEEEEEECCTTCSSCEEEEEEEE
T ss_pred ecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc--ccceeeeeeeeeEEEecCCCCCCceEEEEEE
Confidence 222 466788888888888765432 367899998764 34577888877666655543 333333
Q ss_pred C---CCcEEEEecCCC--Cc----eeEEEEecC---CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 385 A---DRNICLWRREES--GA----HSCLAVLTG---HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 385 ~---dg~i~iwd~~~~--~~----~~~~~~~~~---h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
. .++++|-++... +. .+.+..+-. -.+--.++..++... +++.-+.-|.|.+||+
T Consensus 222 r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg-------------viyviTK~G~ihlyDl 288 (365)
T 2xzh_A 222 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-------------VVFLITKYGYIHLYDL 288 (365)
T ss_dssp EETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT-------------EEEEEETTSEEEEEET
T ss_pred ecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC-------------EEEEEeCCcEEEEEEc
Confidence 2 258999998543 11 111111111 133345666666655 7888889999999999
Q ss_pred CCCCCCcc
Q 012007 453 SEHAPDLK 460 (473)
Q Consensus 453 ~~~~~~~~ 460 (473)
.++.....
T Consensus 289 eTgt~i~~ 296 (365)
T 2xzh_A 289 ETGTCIYM 296 (365)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 99875544
No 308
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.22 E-value=0.056 Score=50.32 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=78.7
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe------------eeEEeec------CCCceeEEEEcCCC----EEEEE
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK------------CLESINA------HDDAINSVVAGFDS----LVFTG 294 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~------------~~~~~~~------~~~~v~~l~~~~~~----~l~s~ 294 (473)
.|..+..+|+|++|+..+ +..|.|..+..+. ..+.+.. ....|..+.|+|-+ .|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 567799999999999987 4689999887322 1122322 24679999999975 89999
Q ss_pred eCCCcEEEEeCcccCCCcceeeee-----eeccCCccEEEEEEccCCCEEEEe--CCCCcEEEE
Q 012007 295 SADGTVKVWRRELQGKGTKHCLAQ-----VLLKHENAVTALAVNQESAVVYCG--SSDGLVNFW 351 (473)
Q Consensus 295 ~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~v~~l~~~~~~~~l~~~--~~dg~i~iw 351 (473)
..|+.|++||+........ .+.. ........|.+++|..++-.|++. +.+|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999985221111 1111 112233678999999988777774 488888654
No 309
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.16 E-value=0.24 Score=49.54 Aligned_cols=222 Identities=9% Similarity=0.024 Sum_probs=129.2
Q ss_pred EEEEeeCCCcEEEeeCCccc-c-cc-ccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEeecccccccee
Q 012007 135 LLYTGSDSKNIRVWKNLKEF-S-GF-KSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDY 210 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~~~-~-~~-~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (473)
+|+.+. ...|+..++.... . .+ ...-..+..|+|++.+..|+.+. .++.|..+++...........
T Consensus 8 ~Ll~s~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~--------- 77 (628)
T 4a0p_A 8 FLLFSR-RADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF--------- 77 (628)
T ss_dssp EEEEEE-TTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------
T ss_pred EEEEEe-CCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC---------
Confidence 344333 3567777664221 1 11 11234678999998766666554 568898888876432211110
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-C
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-D 288 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~ 288 (473)
.......|++.+.+..|+.+ ...+.|.+.++........+.........|++.| .
T Consensus 78 -----------------------g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~ 134 (628)
T 4a0p_A 78 -----------------------GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE 134 (628)
T ss_dssp -----------------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT
T ss_pred -----------------------CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC
Confidence 11345678888766655555 4567899999864432222223445678999987 4
Q ss_pred CEEEEEeC--CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeec
Q 012007 289 SLVFTGSA--DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRG 365 (473)
Q Consensus 289 ~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 365 (473)
+.|+.... .+.|...++.... . ..+...-.....|++++++..|+.+ ...+.|..+|+..... ..+..
T Consensus 135 G~lY~tD~g~~~~I~r~~~dG~~---~----~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~ 205 (628)
T 4a0p_A 135 GFMYWTEWGGKPKIDRAAMDGSE---R----TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIAD 205 (628)
T ss_dssp TEEEEEECSSSCEEEEEETTSCS---C----EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEE
T ss_pred CeEEEeCCCCCCEEEEEeCCCCc---e----EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeec
Confidence 56665553 4566666664211 1 1112234567899999976666555 5567899999875333 23333
Q ss_pred CcceEEEEEecCCEEEEEe-CCCcEEEEecCCCC
Q 012007 366 HKMAVLCLAAAGNLVFSGS-ADRNICLWRREESG 398 (473)
Q Consensus 366 ~~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~~~ 398 (473)
.......++.++..|+... ..+.|...|..++.
T Consensus 206 ~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 206 DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp CCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred cCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence 3333445665555555544 57788888876644
No 310
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.12 E-value=0.18 Score=48.42 Aligned_cols=200 Identities=9% Similarity=0.009 Sum_probs=104.5
Q ss_pred EEEEe-c-CCEEEEeeCCCcEEEeeCCc-ccccccc----CcccEEEEEE-------eCCCCEEEEEeCCC-------eE
Q 012007 127 YSLAA-S-GDLLYTGSDSKNIRVWKNLK-EFSGFKS----NSGLVKAIII-------SGDSNKIFTGHQDG-------KI 185 (473)
Q Consensus 127 ~~~~~-~-g~~l~tg~~dg~i~vwd~~~-~~~~~~~----h~~~V~~l~~-------s~~~~~l~s~~~dg-------~i 185 (473)
+++.+ + ++++++-...+.|++.|... .+..+.. .......|+| ++++++|+.+...+ .|
T Consensus 144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V 223 (496)
T 3kya_A 144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSV 223 (496)
T ss_dssp EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEE
T ss_pred EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceE
Confidence 34554 2 33444444456788888664 3433322 2235899999 99999777766554 24
Q ss_pred EEEeCCC-CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEE
Q 012007 186 RIWKVSR-KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWR 263 (473)
Q Consensus 186 ~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd 263 (473)
.+.+... +...... . . ... .-......++++|++ .++++-..++.|..+|
T Consensus 224 ~~i~r~~~G~~~~~~------------------~-~------~~v---~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 224 YIIKRNADGTFDDRS------------------D-I------QLI---AAYKQCNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp EEEECCTTSCCSTTS------------------C-E------EEE---EEESCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred EEEecCCCCceeecc------------------c-c------eee---ccCCCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 4554332 1110000 0 0 000 011234567889954 4455555777899999
Q ss_pred cC-------CCee-----------eEE-ee-cCCCceeEEEEcCCC-E-EEEEeCCCcEEEEeCcccCCCc--ceeeeee
Q 012007 264 IS-------DCKC-----------LES-IN-AHDDAINSVVAGFDS-L-VFTGSADGTVKVWRRELQGKGT--KHCLAQV 319 (473)
Q Consensus 264 ~~-------~~~~-----------~~~-~~-~~~~~v~~l~~~~~~-~-l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~ 319 (473)
+. ++.. ... +. ........|+++|++ . +++-.....|+.++........ .....-.
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~ 355 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG 355 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence 87 5543 112 21 123345789999998 3 4444567788886654211000 0000000
Q ss_pred --ecc---------CCccEE-EEEEc-------cCCCEEEEeCCCCcEEEEecC
Q 012007 320 --LLK---------HENAVT-ALAVN-------QESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 320 --~~~---------~~~~v~-~l~~~-------~~~~~l~~~~~dg~i~iwd~~ 354 (473)
..+ .-.... .++.. .++.++++-..+..|+.++..
T Consensus 356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~ 409 (496)
T 3kya_A 356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE 409 (496)
T ss_dssp TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT
T ss_pred CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC
Confidence 000 112234 45554 456666666777889999843
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.11 E-value=0.17 Score=46.72 Aligned_cols=228 Identities=11% Similarity=0.077 Sum_probs=116.7
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
.....|+|.|+|+ |+.+..+|.|++++. ++. .....+. . ..........|
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~-~~~~~~~---v------------------------~~~g~~g~~gi 78 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGK-KLVASFD---V------------------------ANVGEAGLLGL 78 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCE-EEEEECC---C------------------------CCSTTCSEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc-eEeeccc---e------------------------eecCCCceeeE
Confidence 3467899999997 555567799998873 332 1111100 0 00123457889
Q ss_pred EEcCC---CCEEEEEeC----C----CCEEEEEcCCC-------eee-EEeec-CCCceeEEEEcCCCEEEEEeCC----
Q 012007 242 SLNAE---QGLLYSGSW----D----KTLKVWRISDC-------KCL-ESINA-HDDAINSVVAGFDSLVFTGSAD---- 297 (473)
Q Consensus 242 ~~~~~---~~~l~s~s~----d----g~v~vwd~~~~-------~~~-~~~~~-~~~~v~~l~~~~~~~l~s~~~d---- 297 (473)
+++|+ +..|+++.. + ..|..|+.... +.+ ..+.. .......|.|.|++.|+.+..+
T Consensus 79 a~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~ 158 (354)
T 3a9g_A 79 ALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADP 158 (354)
T ss_dssp EECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCG
T ss_pred EeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCC
Confidence 99997 566666543 2 56777877543 111 12321 1123467899999955544322
Q ss_pred ----------CcEEEEeCcccCCCcce----eeeeeeccCCccEEEEEEcc-CCCEEEEeCCCC---cEEEEecCCc---
Q 012007 298 ----------GTVKVWRRELQGKGTKH----CLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDG---LVNFWECEKH--- 356 (473)
Q Consensus 298 ----------g~i~vwd~~~~~~~~~~----~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg---~i~iwd~~~~--- 356 (473)
|.|.-++.. +..... .......++. ....++|+| ++.++++-.... .|.+......
T Consensus 159 ~~~~d~~~~~G~I~ri~~d--G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGw 235 (354)
T 3a9g_A 159 RLAQDLSSLAGKILRVDEE--GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGW 235 (354)
T ss_dssp GGGTCTTCCSSEEEEECTT--SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCT
T ss_pred ccccCCCCCCeEEEEEcCC--CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCC
Confidence 344444443 110000 0011122332 246799999 666555433222 2443321110
Q ss_pred ------------cccccee-ecCcceEEEEE---------ecCCEEEEEeCCCcEEEEecCCCCceeEEEE-ecCCCCce
Q 012007 357 ------------LSHGGVL-RGHKMAVLCLA---------AAGNLVFSGSADRNICLWRREESGAHSCLAV-LTGHTGPV 413 (473)
Q Consensus 357 ------------~~~~~~~-~~~~~~v~~~~---------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~V 413 (473)
......+ ..| .....+. ++|.++++.-..+.|...++...+....... +.+-...+
T Consensus 236 p~~~g~~~~~~~~~p~~~~~~~~-~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp 314 (354)
T 3a9g_A 236 PLATGKAGRGEFVDPVIDTGSET-WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRL 314 (354)
T ss_dssp TTCCSCCCCTTSCCCSEECTTCC-CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCE
T ss_pred CcccCCCCCCCCcCCEeecCCCC-cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCe
Confidence 0111111 112 2233343 3577777777777888888875321111222 33334578
Q ss_pred eEEEEecCCC
Q 012007 414 KCLAVEEDRD 423 (473)
Q Consensus 414 ~~l~~~~~~~ 423 (473)
..+++.||+.
T Consensus 315 ~~v~~~pDG~ 324 (354)
T 3a9g_A 315 RDVVIDDDGG 324 (354)
T ss_dssp EEEEECTTSC
T ss_pred eEEEECCCCc
Confidence 9999999987
No 312
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.11 E-value=0.27 Score=49.16 Aligned_cols=196 Identities=11% Similarity=0.055 Sum_probs=115.0
Q ss_pred CCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-C-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 236 DAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
..+..|+|++.+..|+.+. .++.|..+++........+.........+++... + ++++-...+.|.+.++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--- 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--- 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---
Confidence 4577899999766666554 5688999988654433333333345677777644 3 45555667889998876221
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeC--CCCcEEEEecCCcccccceeec-CcceEEEEEecCCEEEEE-eCCCc
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGS--SDGLVNFWECEKHLSHGGVLRG-HKMAVLCLAAAGNLVFSG-SADRN 388 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~-~~dg~ 388 (473)
...+ ....-.....|+++|....|+... ..+.|...++...... ..... ....-+++++++..|+.+ ...+.
T Consensus 114 ~~~l---~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~P~GlalD~~~~~LY~aD~~~~~ 189 (628)
T 4a0p_A 114 RQVL---VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTIDYAKRRLYWTDLDTNL 189 (628)
T ss_dssp CEEE---ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSCSSEEEEEEETTTTEEEEEETTTTE
T ss_pred EEEE---EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECCCCCcceEEEccccCEEEEEECCCCE
Confidence 1111 113335578999999655565554 2567888877653222 11211 112234555555655555 45678
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
|..+++..... +.+.. ......+|++..+ . ++++-...+.|...+..++.
T Consensus 190 I~~~d~dG~~~-~v~~~---~l~~P~glav~~~-~-------------ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 190 IESSNMLGLNR-EVIAD---DLPHPFGLTQYQD-Y-------------IYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEETTSCSC-EEEEE---CCSCEEEEEEETT-E-------------EEEEETTTTEEEEEETTTCC
T ss_pred EEEEcCCCCce-EEeec---cCCCceEEEEECC-E-------------EEEecCCCCEEEEEECCCCC
Confidence 99999876433 33322 2233467887653 2 55555567788888865554
No 313
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.08 E-value=0.29 Score=48.90 Aligned_cols=217 Identities=8% Similarity=0.028 Sum_probs=118.3
Q ss_pred CcEEEeeCCcc---ccccccCcccEEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCc
Q 012007 143 KNIRVWKNLKE---FSGFKSNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK 218 (473)
Q Consensus 143 g~i~vwd~~~~---~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (473)
..|++.++... .......-..+..|+|++.+..|+.+.. .+.|..++++......... .
T Consensus 18 ~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~-~---------------- 80 (619)
T 3s94_A 18 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-V---------------- 80 (619)
T ss_dssp SBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEE-C----------------
T ss_pred ccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEE-e----------------
Confidence 46677665532 2223333456789999987777766554 5788888886542111100 0
Q ss_pred ceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CEEEEEeC
Q 012007 219 NYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA 296 (473)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~ 296 (473)
........|++++.+..|+.+ ...+.|.+.++........+.........|++.|. +.|+....
T Consensus 81 --------------~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~ 146 (619)
T 3s94_A 81 --------------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW 146 (619)
T ss_dssp --------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC
T ss_pred --------------CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc
Confidence 012457789999866655555 45688999998654332223234456778888875 56655543
Q ss_pred --CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeecCcceEEEE
Q 012007 297 --DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRGHKMAVLCL 373 (473)
Q Consensus 297 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 373 (473)
.+.|...++. +. ... ......-.....|++++++..|+.+ ...+.|..+|+....... ...+.......+
T Consensus 147 g~~~~I~r~~~d--G~-~~~---~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~-~~~~~~~~P~gi 219 (619)
T 3s94_A 147 GEVPKIERAGMD--GS-SRF---IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA-VVKGSLPHPFAL 219 (619)
T ss_dssp SSSCEEEEEETT--SC-SCE---EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCE
T ss_pred CCCCEEEEEECC--CC-ceE---EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE-EEeCCCCCceEE
Confidence 3556555554 21 111 1111234567899999876555544 556789999987533221 211111112344
Q ss_pred EecCCEEEEE-eCCCcEEEEecCCC
Q 012007 374 AAAGNLVFSG-SADRNICLWRREES 397 (473)
Q Consensus 374 ~~~~~~l~s~-~~dg~i~iwd~~~~ 397 (473)
+.++..|+.+ ...+.|...|..++
T Consensus 220 ~~~~~~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 220 TLFEDILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EESSSEEEEECTTTCSEEEEESSSC
T ss_pred EEeCCEEEEecCCCCEEEEEECCCC
Confidence 5555555544 45678888888664
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.01 E-value=0.18 Score=45.35 Aligned_cols=187 Identities=12% Similarity=0.111 Sum_probs=91.4
Q ss_pred CCCEEEEEeC----C-----CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC-----CcEEEEeCcccC
Q 012007 246 EQGLLYSGSW----D-----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQG 309 (473)
Q Consensus 246 ~~~~l~s~s~----d-----g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d-----g~i~vwd~~~~~ 309 (473)
++.+++.|+. + ..+.+||+.+.+-.. .+......... +...+.+++.|+.+ ..+.+||+...
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~- 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV-GVIDGHIYAVGGSHGCIHHNSVERYEPERD- 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE-EEETTEEEEECCEETTEECCCEEEEETTTT-
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE-EEECCEEEEEcCCCCCcccccEEEECCCCC-
Confidence 4556666654 2 468899987765322 22211112222 22233355555543 35778887632
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-----CcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEE
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-----GLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.......+......-..+.+ ++.+++.|+.+ ..+.+||+.+..-. ...+........+...++.+++.|
T Consensus 148 ---~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 222 (308)
T 1zgk_A 148 ---EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAG 222 (308)
T ss_dssp ---EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred ---eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEe
Confidence 22222222211222222333 56777777654 45888988653211 111111111223334577888888
Q ss_pred eCC-----CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC-----CcEEEEEcC
Q 012007 384 SAD-----RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD-----KSVKVWRVS 453 (473)
Q Consensus 384 ~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D-----g~v~iW~i~ 453 (473)
+.+ ..+.+||+.+ ..+..+..+...... .+++.. ++. +++.|+.+ ..|.+||+.
T Consensus 223 G~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~-~~~~~~-~~~-------------i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 223 GYDGQDQLNSVERYDVET-ETWTFVAPMKHRRSA-LGITVH-QGR-------------IYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp CBCSSSBCCCEEEEETTT-TEEEECCCCSSCCBS-CEEEEE-TTE-------------EEEECCBCSSCBCCEEEEEETT
T ss_pred CCCCCCccceEEEEeCCC-CcEEECCCCCCCccc-eEEEEE-CCE-------------EEEEcCcCCCcccceEEEEcCC
Confidence 765 4689999887 334443332221111 122222 333 67777754 347778876
Q ss_pred CC
Q 012007 454 EH 455 (473)
Q Consensus 454 ~~ 455 (473)
+.
T Consensus 287 ~~ 288 (308)
T 1zgk_A 287 TD 288 (308)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 315
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.93 E-value=0.61 Score=50.18 Aligned_cols=184 Identities=12% Similarity=0.118 Sum_probs=94.3
Q ss_pred ccCCeeEEEEcCC------CCEEEEEeC-CCCEEEEEcCCCeeeEEeecC-CCceeEEEEc--CC-CEEEEEeCCCcEEE
Q 012007 234 HYDAVSCLSLNAE------QGLLYSGSW-DKTLKVWRISDCKCLESINAH-DDAINSVVAG--FD-SLVFTGSADGTVKV 302 (473)
Q Consensus 234 ~~~~v~~l~~~~~------~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~~--~~-~~l~s~~~dg~i~v 302 (473)
-...|.|+++.+. +.++++|.+ |++|+|+++.+.+.+...... .....++.+. .. -+|+.|-.||.+..
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 3557999998763 479999997 999999999887665443321 1233334322 12 27889999999877
Q ss_pred EeCcccCCCcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec--CCE
Q 012007 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNL 379 (473)
Q Consensus 303 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 379 (473)
+.+..... .-........+ ..++.-..+...+. .+++.+ +.-..+|.-+............-..+..|+.. .+-
T Consensus 632 ~~~d~~tg-~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g 708 (1158)
T 3ei3_A 632 FGLNIETG-LLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 708 (1158)
T ss_dssp EEECTTTC-CEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTE
T ss_pred EEEcCCCC-ccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCc
Confidence 76542110 11111112222 23443333433332 333333 33333443332111100000001122333221 344
Q ss_pred EEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 380 VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
++..+ ++.++|..+..... -.+..+. -...+..++++|+.+
T Consensus 709 ~v~~~-~~~LrI~~i~~~~~-~~~~~ip-L~~Tprri~y~~~~~ 749 (1158)
T 3ei3_A 709 LALAN-NSTLTIGTIDEIQK-LHIRTVP-LYESPRKICYQEVSQ 749 (1158)
T ss_dssp EEEEC-SSCEEEEEECCSSS-EEEEEEE-CSSEEEEEEEEGGGT
T ss_pred EEEEc-CCceEEEEecccCC-eeEEEEe-CCCCceEEEEcCCCC
Confidence 54444 45699998865332 2333332 245789999999877
No 316
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.90 E-value=0.25 Score=45.29 Aligned_cols=181 Identities=12% Similarity=0.110 Sum_probs=102.0
Q ss_pred CeeEEEEcCCCCEEEEE------------eCCCCEEEEEcCC--Ceee-EEeec-----CCCceeEEEEcC--CC--EEE
Q 012007 237 AVSCLSLNAEQGLLYSG------------SWDKTLKVWRISD--CKCL-ESINA-----HDDAINSVVAGF--DS--LVF 292 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~------------s~dg~v~vwd~~~--~~~~-~~~~~-----~~~~v~~l~~~~--~~--~l~ 292 (473)
....+...++|..++++ ..+|.|.++|+.+ ++.. ..+.+ .......+.+.+ ++ +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45667778876544443 1689999999873 2221 11222 123455666544 33 455
Q ss_pred EEeC---CCcEEEEeCcccCCCcceeeeeeecc-CCccEEEEEEccCCCEEEEeCC-----------------CCcEEEE
Q 012007 293 TGSA---DGTVKVWRRELQGKGTKHCLAQVLLK-HENAVTALAVNQESAVVYCGSS-----------------DGLVNFW 351 (473)
Q Consensus 293 s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~-----------------dg~i~iw 351 (473)
++.. +..|.+|++..... .........+ .-...+.+.+.++|.+.++... .|.|..+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCC--EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 5432 46788888764332 2223333332 2346789999999988777541 2456556
Q ss_pred ecCCcccccceeec-CcceEEEEEecCCEEEEEe-CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec-CCC
Q 012007 352 ECEKHLSHGGVLRG-HKMAVLCLAAAGNLVFSGS-ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE-DRD 423 (473)
Q Consensus 352 d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~ 423 (473)
|..+ ......+ ....-.++++|++.|+.+. ..+.|..|++...+.......+. ..+..-.+++.+ ++.
T Consensus 209 d~~~---~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 209 SPND---VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGD 279 (355)
T ss_dssp CTTC---CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCC
T ss_pred ECCe---EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCc
Confidence 5431 1112221 2233467888998777665 56889999987533222233332 245667888888 476
No 317
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.85 E-value=0.54 Score=48.32 Aligned_cols=272 Identities=13% Similarity=0.170 Sum_probs=146.3
Q ss_pred ccEEEEEec-CCEEEEeeCCCcEEEeeCCc-ccccccc------CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe
Q 012007 124 GHIYSLAAS-GDLLYTGSDSKNIRVWKNLK-EFSGFKS------NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 124 ~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~-~~~~~~~------h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
..|.++..+ ...|..|+.+| |..++... .+..+.. ....|.++....++..|..|.. +-+..+|..++..
T Consensus 146 ~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI 223 (758)
T ss_dssp SCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred CeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence 357787776 33445566554 66676542 2221111 1234888988877766666654 3577788766543
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN- 274 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~- 274 (473)
...... ....|.++....++.+ ..|+.+ -+.+++..+++......
T Consensus 224 ~~~~~l--------------------------------~~~~i~~i~~d~~g~l-WigT~~-Gl~~~~~~~~~~~~~~~~ 269 (758)
T 3ott_A 224 KQTEAF--------------------------------HNNSIKSLALDGNGDL-LAGTDN-GLYVYHNDTTPLQHIIHD 269 (758)
T ss_dssp EEEEEE--------------------------------EEEEEEEEEECTTCCE-EEEETT-EEEEECCTTSCCEEECCC
T ss_pred EeccCC--------------------------------CCCeEEEEEEcCCCCE-EEEeCC-ceeEEecCCCcEEEEEcC
Confidence 211100 1234778887777764 445544 58888876654322211
Q ss_pred ------cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee--eccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 275 ------AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV--LLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 275 ------~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
.....|.++....++.|..|+..| +.++... .. ........ .......|.++....+|.+.+ |+.+|
T Consensus 270 ~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~--~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G 344 (758)
T 3ott_A 270 SRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYN--SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG 344 (758)
T ss_dssp TTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCC--C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE
T ss_pred CCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccC--Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc
Confidence 123468888888888777777777 5544321 10 00000000 011234688888888887654 44555
Q ss_pred cEEEEecCCccccc-ceee-------cCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecC----CCCce
Q 012007 347 LVNFWECEKHLSHG-GVLR-------GHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTG----HTGPV 413 (473)
Q Consensus 347 ~i~iwd~~~~~~~~-~~~~-------~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~~V 413 (473)
+..++..++.... ..+. -....|.++..+ ...|..|+ ++-|..|+..+.. ......... ....|
T Consensus 345 -l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~-~~~~~~~~~~~~~~~~~v 421 (758)
T 3ott_A 345 -LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQ-FIHYNIVDNTGTYNTNWT 421 (758)
T ss_dssp -EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTE-EEEEEEECCC--CBSSSE
T ss_pred -ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCc-EEEeecCCCcCCCCCceE
Confidence 5566654321110 0110 112357777766 33455666 4579999987632 222211111 12457
Q ss_pred eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 414 KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.++....++. |..|+..+-|.+++..
T Consensus 422 ~~i~~d~~g~--------------lWigT~~~Gl~~~~~~ 447 (758)
T 3ott_A 422 YYIFEDTAGQ--------------LWISTCLGGIFVVDKH 447 (758)
T ss_dssp EEEEECTTSE--------------EEEEESSSCEEEEEHH
T ss_pred EEEEEcCCCC--------------EEEEECCCceEEEccc
Confidence 7777766654 5556666668888754
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.72 E-value=0.32 Score=43.84 Aligned_cols=152 Identities=11% Similarity=0.111 Sum_probs=75.2
Q ss_pred CCCCEEEEEeC----C-------CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC--------CcEEEE
Q 012007 245 AEQGLLYSGSW----D-------KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD--------GTVKVW 303 (473)
Q Consensus 245 ~~~~~l~s~s~----d-------g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d--------g~i~vw 303 (473)
.++.+++.|+. + ..+.+||..+.+-.. .+...... .+++...+.+++.|+.+ ..+.+|
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 122 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGEALNSIYVVGGREIKDGERCLDSVMCY 122 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEEETTEEEEECCEESSTTCCBCCCEEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEEECCEEEEEeCCcCCCCCcccceEEEE
Confidence 46777777773 1 127788887765322 12111111 12222233355556532 458888
Q ss_pred eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-C-----CcEEEEecCCccc-ccceeecCcceEEEEEec
Q 012007 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-D-----GLVNFWECEKHLS-HGGVLRGHKMAVLCLAAA 376 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~ 376 (473)
|+... .......+.........+. -++++++.|+. + ..+.+||..+..- ....+........+...+
T Consensus 123 d~~~~----~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 196 (315)
T 4asc_A 123 DRLSF----KWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHD 196 (315)
T ss_dssp ETTTT----EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred CCCCC----cEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEEC
Confidence 87632 2222222221122222222 35567777765 2 4688899875321 111111111222334457
Q ss_pred CCEEEEEeCCC-----cEEEEecCCCCceeEEE
Q 012007 377 GNLVFSGSADR-----NICLWRREESGAHSCLA 404 (473)
Q Consensus 377 ~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~ 404 (473)
+++++.|+.++ .+.+||..+ ..+..+.
T Consensus 197 ~~iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~ 228 (315)
T 4asc_A 197 GRIIVAAGVTDTGLTSSAEVYSITD-NKWAPFE 228 (315)
T ss_dssp TEEEEEEEECSSSEEEEEEEEETTT-TEEEEEC
T ss_pred CEEEEEeccCCCCccceEEEEECCC-CeEEECC
Confidence 88888887654 488889877 3344443
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.66 E-value=0.35 Score=43.58 Aligned_cols=144 Identities=10% Similarity=0.100 Sum_probs=71.5
Q ss_pred CCCEEEEEeCC--------CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeC-C-----CcEEEEeCcccC
Q 012007 246 EQGLLYSGSWD--------KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSA-D-----GTVKVWRRELQG 309 (473)
Q Consensus 246 ~~~~l~s~s~d--------g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~-d-----g~i~vwd~~~~~ 309 (473)
++.+++.|+.+ ..+.+||+.+.+-.. .+...... .+++...+.+++.|+. + ..+.+||+...
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~- 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF- 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTT-
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCC-
Confidence 45666666632 458899998764322 22211111 2223333445666665 2 46888887632
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-----cEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEE
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-----LVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.......+........++.+ ++++++.|+.++ .+.+||+.+..-. ...+........+...++++++.|
T Consensus 176 ---~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~G 250 (315)
T 4asc_A 176 ---EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIG 250 (315)
T ss_dssp ---EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEE
T ss_pred ---eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEEC
Confidence 22222222211222222222 567777776554 4788888753211 111111111223344577888888
Q ss_pred eCCC--------------cEEEEecCC
Q 012007 384 SADR--------------NICLWRREE 396 (473)
Q Consensus 384 ~~dg--------------~i~iwd~~~ 396 (473)
+.++ .|.+||+.+
T Consensus 251 G~~~~~~~~~~~~~~~~~~v~~yd~~~ 277 (315)
T 4asc_A 251 GFATLETESGELVPTELNDIWRYNEEE 277 (315)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTT
T ss_pred CccccCcCCccccccccCcEEEecCCC
Confidence 7642 366788776
No 320
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.66 E-value=0.22 Score=45.76 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeC------CCcEEEEeCcccCCCcceeeeeeeccCCccEE
Q 012007 257 KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSA------DGTVKVWRRELQGKGTKHCLAQVLLKHENAVT 328 (473)
Q Consensus 257 g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 328 (473)
..+.+||+.+.+-.. .+......-.+++...+.+++.|+. ...+.+||+.... ........+........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~--~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNN--LKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC-----CEEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCC--CcEEecCCCCCCccccc
Confidence 478999988765332 2221111112333334445555553 3456677762111 12222222211111111
Q ss_pred EEEEccCCCEEEEeCCC----------------------CcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeC
Q 012007 329 ALAVNQESAVVYCGSSD----------------------GLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 329 ~l~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
..+...++.+++.|+.+ ..+.+||+.+..-. ...+........++..++++++.|+.
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 325 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGE 325 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeee
Confidence 11222356677777632 24778888753211 11111112222345568888888886
Q ss_pred CC------cEEEEecCCC
Q 012007 386 DR------NICLWRREES 397 (473)
Q Consensus 386 dg------~i~iwd~~~~ 397 (473)
++ .|.++++++.
T Consensus 326 ~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 326 TAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp CGGGCEEEEEEEEEC-CC
T ss_pred CCCCCEeeeEEEEEEcCc
Confidence 53 3555677763
No 321
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.60 E-value=0.39 Score=43.32 Aligned_cols=153 Identities=8% Similarity=0.054 Sum_probs=72.5
Q ss_pred cCCCCEEEEEeC----CC-------CEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC-------CcEEEE
Q 012007 244 NAEQGLLYSGSW----DK-------TLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD-------GTVKVW 303 (473)
Q Consensus 244 ~~~~~~l~s~s~----dg-------~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d-------g~i~vw 303 (473)
..++.+++.|+. ++ .+.+||..+.+-.. .+...... .+++...+.+++.|+.+ ..+.+|
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEVDDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEETTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEECCEEEEEcCccCCCCcccceEEEE
Confidence 346677777773 11 17788887765332 12211111 22222333455566543 246777
Q ss_pred eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC------CCcEEEEecCCcccc-cceeecCcceEEEEEec
Q 012007 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS------DGLVNFWECEKHLSH-GGVLRGHKMAVLCLAAA 376 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~ 376 (473)
|+... .......+......-. ++. .++.+++.|+. -..+.+||+.+..-. ............+...+
T Consensus 133 d~~~~----~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 206 (318)
T 2woz_A 133 DPVAA----KWSEVKNLPIKVYGHN-VIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHK 206 (318)
T ss_dssp ETTTT----EEEEECCCSSCEESCE-EEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred eCCCC----CEeECCCCCCcccccE-EEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEEC
Confidence 77532 2222111111111111 222 35667777764 235889998753211 11111111112334457
Q ss_pred CCEEEEEeCC-----CcEEEEecCCCCceeEEE
Q 012007 377 GNLVFSGSAD-----RNICLWRREESGAHSCLA 404 (473)
Q Consensus 377 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~ 404 (473)
+.+++.|+.+ ..+.+||+.+. .+..+.
T Consensus 207 ~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~ 238 (318)
T 2woz_A 207 GKIVIAGGVTEDGLSASVEAFDLKTN-KWEVMT 238 (318)
T ss_dssp TEEEEEEEEETTEEEEEEEEEETTTC-CEEECC
T ss_pred CEEEEEcCcCCCCccceEEEEECCCC-eEEECC
Confidence 7888887754 34778888773 344443
No 322
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.58 E-value=0.054 Score=45.53 Aligned_cols=106 Identities=6% Similarity=-0.085 Sum_probs=60.4
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee------EEe-ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCC
Q 012007 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL------ESI-NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~------~~~-~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~ 310 (473)
-.++.|.++|.+.++ .||.|+-++-.+...- ..+ ..--..+..|.+.|++.|.+.. |+.+.-+.......
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~ 166 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQ 166 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTT
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCC
Confidence 478999999987777 4698887775331110 111 1122467899999999888888 88854332221110
Q ss_pred Ccceeeeeeec-cCCccEEEEEEccCCCEEEEeCCCCcE
Q 012007 311 GTKHCLAQVLL-KHENAVTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 311 ~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i 348 (473)
..-......+. ..-...+-+.|.+++.+.++. +|.+
T Consensus 167 ~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 167 DNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp CCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred cccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 00000111111 222344557799999877776 6644
No 323
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.45 E-value=0.59 Score=43.69 Aligned_cols=197 Identities=11% Similarity=0.123 Sum_probs=128.3
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeee
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
.-.+|..+.++.-. ..++.|+|+++.+.+..+.-.+ .|.-=.|-.+..|+..+ +..|.-|++.... .+.+.+
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT-~taVyHWsi~~~s-----~P~kvF 142 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGES-----QPVKMF 142 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEEC-SSEEEEEESSSSC-----CCEEEE
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEc-CCeeEEecccCCC-----Cchhhe
Confidence 34677777666655 6789999999999988887555 45555565555554443 5689999986421 222222
Q ss_pred ccC----CccEEEEEEccCCCEEEEeCC-------CCcEEEEecCCcccccceeecCcceEEEEEecCC-----EEEEEe
Q 012007 321 LKH----ENAVTALAVNQESAVVYCGSS-------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-----LVFSGS 384 (473)
Q Consensus 321 ~~~----~~~v~~l~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~s~~ 384 (473)
..| ...|..-..+++.++++..+- .|.+.+|..+.. ..+.+.||...-..+..+|+ +++-+.
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--ccchheeeeeeeEEEecCCCCCCceEEEEEE
Confidence 222 466888888899988765432 467899998764 44578888887777766643 444444
Q ss_pred CC---CcEEEEecCCCCc------eeEEEEecC---CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 385 AD---RNICLWRREESGA------HSCLAVLTG---HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 385 ~d---g~i~iwd~~~~~~------~~~~~~~~~---h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
.. +.++|-++..... .+.+..+-. -.+--.++..++... +++.-..-|.|.++|+
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-------------viyviTK~G~i~lyDl 287 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-------------VVFLITKYGYIHLYDL 287 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-------------EEEEEETTSEEEEEET
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-------------EEEEEecCceEEEEec
Confidence 32 7899999865310 111111111 133345677777666 7888889999999999
Q ss_pred CCCCCCcc
Q 012007 453 SEHAPDLK 460 (473)
Q Consensus 453 ~~~~~~~~ 460 (473)
.++.....
T Consensus 288 eTgt~i~~ 295 (494)
T 1bpo_A 288 ETGTCIYM 295 (494)
T ss_dssp TTCCEEEE
T ss_pred ccceeeee
Confidence 98875443
No 324
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.45 E-value=0.54 Score=43.21 Aligned_cols=104 Identities=7% Similarity=0.082 Sum_probs=60.1
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee--eEEee---cCCCceeEEEEcCC----CEEEEEeC-C-----CcE
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC--LESIN---AHDDAINSVVAGFD----SLVFTGSA-D-----GTV 300 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~--~~~~~---~~~~~v~~l~~~~~----~~l~s~~~-d-----g~i 300 (473)
.....|+|.|+|++ +++..+|.|.+++ +++. +..+. ........|+++|+ +.|+.+.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45678999999984 5556679999998 4442 22221 12356789999998 55554433 2 567
Q ss_pred EEEeCcccCCCcceeeeeeec---cCCccEEEEEEccCCCEEEEe
Q 012007 301 KVWRRELQGKGTKHCLAQVLL---KHENAVTALAVNQESAVVYCG 342 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~ 342 (473)
..|+...........+...+. ........|+|.|+|.++++.
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 777765211001111122122 111223689999999766654
No 325
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.44 E-value=0.31 Score=45.45 Aligned_cols=111 Identities=7% Similarity=0.066 Sum_probs=74.5
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecC----CCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcc------
Q 012007 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAH----DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTK------ 313 (473)
Q Consensus 244 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------ 313 (473)
..++..++.+- ++.||.-++......+.+... -..|..+..+|+|.+++...+..|.|..+..+.....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence 34666666665 478888888754444555433 2357889999999666666778999998863221111
Q ss_pred --eeeeeeecc----CCccEEEEEEccC---CCEEEEeCCCCcEEEEecCC
Q 012007 314 --HCLAQVLLK----HENAVTALAVNQE---SAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 314 --~~~~~~~~~----~~~~v~~l~~~~~---~~~l~~~~~dg~i~iwd~~~ 355 (473)
......+.. ...+|..+.|||- +..|++-..|+.|++||+..
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 000111111 3577999999994 56899999999999999985
No 326
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.37 E-value=0.17 Score=46.53 Aligned_cols=157 Identities=8% Similarity=0.073 Sum_probs=84.4
Q ss_pred ceeEEEEcCCCEEEEEe-------------CCCcEEEEeCcccCCCcceeeeee---eccCCccEEEEEEcc--CCC--E
Q 012007 279 AINSVVAGFDSLVFTGS-------------ADGTVKVWRRELQGKGTKHCLAQV---LLKHENAVTALAVNQ--ESA--V 338 (473)
Q Consensus 279 ~v~~l~~~~~~~l~s~~-------------~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~--~~~--~ 338 (473)
....+...+++.+++++ .+|.|.++|...... ....+... .....-....|.+.+ ++. +
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~-~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP-AVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSC-CEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCC-ceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 44566677788777665 689999999863221 11111111 111234567777765 343 4
Q ss_pred EEEeCC--CCcEEEEecCCccc---ccceeecCc---ceEEEEEecCCEEEEEeC-----------------CCcEEEEe
Q 012007 339 VYCGSS--DGLVNFWECEKHLS---HGGVLRGHK---MAVLCLAAAGNLVFSGSA-----------------DRNICLWR 393 (473)
Q Consensus 339 l~~~~~--dg~i~iwd~~~~~~---~~~~~~~~~---~~v~~~~~~~~~l~s~~~-----------------dg~i~iwd 393 (473)
+++-.. +..|.+|++..... +.....+.. ..-..+.++|.+.++... .|.|..++
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 56788887754221 111222211 122445567877776541 23344444
Q ss_pred cCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 394 REESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
. +. ...+ ...-..-+.|+|+||++. +.++-+..+.|..|++..
T Consensus 210 ~--~~-~~~~---~~~l~~pNGia~spDg~~------------lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 210 P--ND-VRVV---AEGFDFANGINISPDGKY------------VYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp T--TC-CEEE---EEEESSEEEEEECTTSSE------------EEEEEGGGTEEEEEEECT
T ss_pred C--Ce-EEEe---ecCCcccCcceECCCCCE------------EEEEeCCCCeEEEEEECC
Confidence 3 21 1211 111234689999999973 455555678899999874
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.04 E-value=0.15 Score=42.84 Aligned_cols=110 Identities=5% Similarity=-0.100 Sum_probs=65.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee------eEEeec-CCCceeEEEEcCCCEEEEEeCCCcEEEEeCccc
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC------LESINA-HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~------~~~~~~-~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~ 308 (473)
..+.+++|+|++.+.++ .+|.++-.+..+... -..+-. --....++.+.+++.|.++ .||.|.-++....
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQS 117 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence 47789999998885555 567766666544211 111110 1112478899999977777 6798887775332
Q ss_pred CCCcceee-eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 309 GKGTKHCL-AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 309 ~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
+...-... ...-..-=..+..|.+.|+|.+.++. |+.++-
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 22111000 01111112467999999999988777 777543
No 328
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.02 E-value=1.4 Score=43.90 Aligned_cols=191 Identities=11% Similarity=0.096 Sum_probs=104.1
Q ss_pred EEEEEec--CCEEEEe-eCCCcEEEeeCCcc---ccccccCcccEEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCeeeE
Q 012007 126 IYSLAAS--GDLLYTG-SDSKNIRVWKNLKE---FSGFKSNSGLVKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 126 V~~~~~~--g~~l~tg-~~dg~i~vwd~~~~---~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~ 198 (473)
..+++++ +..|+.+ ...+.|..++.... ...+...-.....|++...+..|+.+ ...+.|.+.+++.......
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l 121 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 121 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEE
Confidence 4455544 5555544 44667877775432 11222223568899999866555554 4568899999876542211
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC--CCEEEEEcCCCeeeEEeecC
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD--KTLKVWRISDCKCLESINAH 276 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d--g~v~vwd~~~~~~~~~~~~~ 276 (473)
.. ........|+++|.+.+|+...+. +.|...++............
T Consensus 122 ~~--------------------------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 122 FW--------------------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp EC--------------------------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred Ee--------------------------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC
Confidence 10 122345679999977777776643 55666666433222222233
Q ss_pred CCceeEEEEcCC-CEEE-EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 277 DDAINSVVAGFD-SLVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 277 ~~~v~~l~~~~~-~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
-...+.|++.++ +.|+ +-...+.|...|+.... ...+......| ...|++..+ .++++-...+.|...|..
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~---P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLPH---PFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE---EC------------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc---cEEEEeCCCCC---ceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 456788999875 4444 44556778888875321 11111111122 245666655 444444556778777765
Q ss_pred C
Q 012007 355 K 355 (473)
Q Consensus 355 ~ 355 (473)
+
T Consensus 243 t 243 (619)
T 3s94_A 243 T 243 (619)
T ss_dssp S
T ss_pred C
Confidence 4
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.93 E-value=0.89 Score=40.87 Aligned_cols=144 Identities=10% Similarity=0.101 Sum_probs=70.2
Q ss_pred CCCEEEEEeCC-------CCEEEEEcCCCeeeEE--eecCCCceeEEEEcCCCEEEEEeC------CCcEEEEeCcccCC
Q 012007 246 EQGLLYSGSWD-------KTLKVWRISDCKCLES--INAHDDAINSVVAGFDSLVFTGSA------DGTVKVWRRELQGK 310 (473)
Q Consensus 246 ~~~~l~s~s~d-------g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~l~s~~~------dg~i~vwd~~~~~~ 310 (473)
++.+++.|+.+ ..+.+||+.+.+-... +...... .+++...+.+++.|+. -..+.+||+...
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~-- 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKG-- 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEEETTEEEEECCEESSSCBCCCEEEEETTTT--
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEEECCEEEEEcCCCCCCCccceEEEEcCCCC--
Confidence 56677777754 2478888877653322 2111111 1222223335555553 235888888642
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-----CcEEEEecCCccc-ccceeecCcceEEEEEecCCEEEEEe
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-----GLVNFWECEKHLS-HGGVLRGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~l~s~~ 384 (473)
.......+........++.+ ++++++.|+.+ ..+.+||+.+..- ....+........+...++.+++.|+
T Consensus 186 --~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 261 (318)
T 2woz_A 186 --DWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGG 261 (318)
T ss_dssp --EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred --EEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEECC
Confidence 22222222111121222222 56677777643 3467888875321 11111111222234456778888877
Q ss_pred CC--------------CcEEEEecCC
Q 012007 385 AD--------------RNICLWRREE 396 (473)
Q Consensus 385 ~d--------------g~i~iwd~~~ 396 (473)
.+ ..+.+||+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 262 FAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp BCCBC----CCBCCBCCCEEEEETTT
T ss_pred eeccCCCCceeccceeeeEEEEeCCC
Confidence 54 3477888876
No 330
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.90 E-value=0.85 Score=40.35 Aligned_cols=219 Identities=14% Similarity=0.165 Sum_probs=113.8
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecc
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 203 (473)
|..++......+.-. ||.|..|-.. ..+..-......|..|+...+. .++. . ||.|..|-.......-
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg------ 95 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTT------ 95 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTC------
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCC------
Confidence 345554444333334 7888888422 1111111123467777775443 3333 4 9999999765432211
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEE
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV 283 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 283 (473)
.|. .-...|..++.... ..+.-. ||.|+.|-....-.+-.-......|..+
T Consensus 96 ~P~--------------------------~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i 146 (282)
T 3qhy_B 96 VPA--------------------------EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTAL 146 (282)
T ss_dssp CCG--------------------------GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEE
T ss_pred CCc--------------------------ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEE
Confidence 000 01235666665543 333334 8899999765422221111123457777
Q ss_pred EEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee
Q 012007 284 VAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL 363 (473)
Q Consensus 284 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 363 (473)
+......++. . ||.|..|-........ ........|..++......++ . .||.|..|-....-++...
T Consensus 147 ~~G~~~~~~l-~-~G~v~~wG~n~~gqlg------~p~~~~~~v~~i~~G~~hs~a-l--~~G~v~~wG~n~~gqlg~p- 214 (282)
T 3qhy_B 147 DGGVYTALAV-K-NGGVIAWGDNYFGQTT------VPAEAQSGVDDVAGGIFHSLA-L--KDGKVIAWGDNRYKQTTVP- 214 (282)
T ss_dssp EECSSEEEEE-E-TTEEEEEECCTTSTTS------CCGGGGSSEEEEEECSSEEEE-E--ETTEEEEEECCTTSTTCCC-
T ss_pred EcccCEEEEE-E-CCEEEEecCCCCCCCC------CceecCCCeEEEEecCCEEEE-E--ECCeEEEEECCCCCCCCCC-
Confidence 7655544443 3 7999999765432211 011113467777765543333 3 5999999976543222111
Q ss_pred ecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 364 RGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 364 ~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
......+..++....+.++-. ||.|..|=...
T Consensus 215 ~~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 215 TEALSGVSAIASGEWYSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp GGGGSSCCEEEECSSCEEEEE-TTEEEEESTTC
T ss_pred cccCCCceEEEcCCCEEEEEE-CCEEEEecCCC
Confidence 111234566665555544455 99999997665
No 331
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.71 E-value=1.1 Score=45.39 Aligned_cols=147 Identities=8% Similarity=0.056 Sum_probs=77.3
Q ss_pred CCCEEEEEeCC------CCEEEEEcCCCeee--EEeecCCCceeEEEEcCCCEEEEEeCCC--cEEEEeCcccCCCccee
Q 012007 246 EQGLLYSGSWD------KTLKVWRISDCKCL--ESINAHDDAINSVVAGFDSLVFTGSADG--TVKVWRRELQGKGTKHC 315 (473)
Q Consensus 246 ~~~~l~s~s~d------g~v~vwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~ 315 (473)
++.+++.|+.+ ..+.+||+.+.+-. ..+......-.++.+..+.+++.|+.++ .+.+||+... .+.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~----~W~ 526 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE----IFK 526 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT----EEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCC----ceE
Confidence 66677777643 35888998875432 2222222222222323444666776654 6888988642 222
Q ss_pred eeee---eccCCccEEEEEEccC-CCEEEEeCC--C-----CcEEEEecCCccc-----ccceee---cCcceEEEEEec
Q 012007 316 LAQV---LLKHENAVTALAVNQE-SAVVYCGSS--D-----GLVNFWECEKHLS-----HGGVLR---GHKMAVLCLAAA 376 (473)
Q Consensus 316 ~~~~---~~~~~~~v~~l~~~~~-~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~---~~~~~v~~~~~~ 376 (473)
.... .........++.+..+ +.+++.|+. + ..+.+||+.+..- -..... .......+...+
T Consensus 527 ~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~ 606 (695)
T 2zwa_A 527 DVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT 606 (695)
T ss_dssp ECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE
T ss_pred EccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC
Confidence 2221 1112222234555555 667777765 2 3588899876541 001100 111122333445
Q ss_pred -CCEEEEEeCC--------CcEEEEecCC
Q 012007 377 -GNLVFSGSAD--------RNICLWRREE 396 (473)
Q Consensus 377 -~~~l~s~~~d--------g~i~iwd~~~ 396 (473)
+.+++.|+.+ ..|.+||..+
T Consensus 607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp TTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred CCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7888888743 4589999987
No 332
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.61 E-value=1.1 Score=39.59 Aligned_cols=224 Identities=18% Similarity=0.146 Sum_probs=121.1
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
..|..|+.... ..+.-. ||.|..|-.......-. |. .....|..+
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~------p~--------------------------~~~~~i~~i 68 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTM------PA--------------------------ATQSGVDAI 68 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSC------CG--------------------------GGGSCCCEE
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCC------Cc--------------------------cCCCCEEEE
Confidence 35777776544 333335 99999997654322110 00 022346666
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec
Q 012007 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
+...... ++. . ||.|+.|-....-.+..-..-...|..++......++. . ||.|..|-........ ...
T Consensus 69 a~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gqlg------~~~ 137 (282)
T 3qhy_B 69 AAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQTT------VPA 137 (282)
T ss_dssp EECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEE-E-TTEEEEEECCTTSTTS------CCG
T ss_pred EeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEE-e-CCeEEEecCCCCCcCC------CCc
Confidence 6544332 222 4 88898887654222111111124677777765554444 4 9999999765332211 111
Q ss_pred cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCc-e
Q 012007 322 KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGA-H 400 (473)
Q Consensus 322 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~ 400 (473)
.....|..++......+++ . ||.|..|-.....++. ....-...+..++.-..+.++- .||.|..|=....+. .
T Consensus 138 ~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg 212 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTT 212 (282)
T ss_dssp GGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTC
T ss_pred cCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCC
Confidence 1234577777654433332 3 7999999765432221 1111234577777766655555 699999997654221 1
Q ss_pred eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 401 SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 401 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.+. .....|..|+...... ++.. ||.|..|--....
T Consensus 213 ~p~----~~~~~v~~i~~G~~h~--------------~al~--~g~v~~wG~n~~g 248 (282)
T 3qhy_B 213 VPT----EALSGVSAIASGEWYS--------------LALK--NGKVIAWGSSRTA 248 (282)
T ss_dssp CCG----GGGSSCCEEEECSSCE--------------EEEE--TTEEEEESTTCCC
T ss_pred CCc----ccCCCceEEEcCCCEE--------------EEEE--CCEEEEecCCCCc
Confidence 111 1123577777655432 3333 9999999876654
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.57 E-value=0.99 Score=48.81 Aligned_cols=196 Identities=11% Similarity=0.112 Sum_probs=117.6
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec
Q 012007 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
-.+|..+.++.-. ..++.|+|+++.+.+..+.-.. .|.-=.|-....|+..+ +..|.-|++... ..+...+.
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT-~~aVyHW~~~~~-----s~P~k~fd 143 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGE-----SQPVKMFD 143 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEc-CCeEEEeccCCC-----CccHHHHh
Confidence 3567666666554 6789999999888777766444 45555666665444443 567999998631 12223333
Q ss_pred cC----CccEEEEEEccCCCEEEEeC-------CCCcEEEEecCCcccccceeecCcceEEEEEecC-----CEEEEEeC
Q 012007 322 KH----ENAVTALAVNQESAVVYCGS-------SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAG-----NLVFSGSA 385 (473)
Q Consensus 322 ~~----~~~v~~l~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~s~~~ 385 (473)
.| ...|..-..+++.++++..+ -.|.+.+|..+.. ..+.+.||...-..+..+| .+++-+..
T Consensus 144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~ 221 (1630)
T 1xi4_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (1630)
T ss_pred cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc--cchhhhHhHhhhheeccCCCCCCceEEEEEEe
Confidence 33 46677788888888876533 3578999998764 3346667766554444332 22222221
Q ss_pred ---CCcEEEEecCCCCcee-E-----EEEecC---CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 386 ---DRNICLWRREESGAHS-C-----LAVLTG---HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 386 ---dg~i~iwd~~~~~~~~-~-----~~~~~~---h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.+.++|-++....... . +..+-. -.+--.++..++... +++..+.-|.|.++|+.
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-------------~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-------------VVFLITKYGYIHLYDLE 288 (1630)
T ss_pred cCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-------------EEEEEecCceEEEEecc
Confidence 2688898886530111 0 001111 122233455555544 78888889999999999
Q ss_pred CCCCCcc
Q 012007 454 EHAPDLK 460 (473)
Q Consensus 454 ~~~~~~~ 460 (473)
++.....
T Consensus 289 t~~~i~~ 295 (1630)
T 1xi4_A 289 TGTCIYM 295 (1630)
T ss_pred cchhhhh
Confidence 8876544
No 334
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.55 E-value=1.3 Score=39.81 Aligned_cols=253 Identities=13% Similarity=0.143 Sum_probs=144.7
Q ss_pred CcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEE
Q 012007 143 KNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVE 222 (473)
Q Consensus 143 g~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (473)
..|.|-|+...-...+.. -.-.+.-.+|..+.||--. ...+.|+|++++.......
T Consensus 49 ~~VvIiDl~n~~~~~Rrp-i~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~---------------------- 104 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRP-ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT---------------------- 104 (365)
T ss_dssp EEEEEEETTSTTSCEEEE-CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE----------------------
T ss_pred CEEEEEECCCCCCccccc-cccceeeeCCCccEEEEec-CCeEEEechHHhhhhccee----------------------
Confidence 367777876433222111 1112334577777776654 6789999999987655444
Q ss_pred EeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-CeeeEEeecCC----CceeEEEEcCCC--EEEEEe
Q 012007 223 VRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESINAHD----DAINSVVAGFDS--LVFTGS 295 (473)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~----~~v~~l~~~~~~--~l~s~~ 295 (473)
....|.--.|-.+. .|+-.+ +..|+-|++.. ..+.+.+..|. ..|..-..+++. .+++|-
T Consensus 105 -----------~~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI 171 (365)
T 2xzh_A 105 -----------MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI 171 (365)
T ss_dssp -----------CSSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEE
T ss_pred -----------cCCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeE
Confidence 44567777787654 444444 35899999974 45555565443 344444556665 333332
Q ss_pred ------CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC--C-CEEEEeC---CCCcEEEEecCCcc--c--c
Q 012007 296 ------ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE--S-AVVYCGS---SDGLVNFWECEKHL--S--H 359 (473)
Q Consensus 296 ------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~-~~l~~~~---~dg~i~iwd~~~~~--~--~ 359 (473)
-.|.+.+|..+. ...+.+.+|...-..+.+..+ . .+++.+. ..++++|.++.... . .
T Consensus 172 ~~~~~~v~G~mQLYS~er-------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f 244 (365)
T 2xzh_A 172 SAQQNRVVGAMQLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 244 (365)
T ss_dssp EEETTEEEEEEEEEETTT-------TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCC
T ss_pred eccCCccceeEEEEeecc-------cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCc
Confidence 246788898752 123455666444333322211 1 1232222 23689999885431 0 0
Q ss_pred c----ceeec----CcceE-EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccccc
Q 012007 360 G----GVLRG----HKMAV-LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQ 430 (473)
Q Consensus 360 ~----~~~~~----~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~ 430 (473)
. ..+.. ..-+| +.++..-..++.-+.-|.|++||+.+ ..++..-+--..+|..-+-.....
T Consensus 245 ~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleT---gt~i~~nrIS~d~iF~ta~~~~~~------- 314 (365)
T 2xzh_A 245 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET---GTCIYMNRISGETIFVTAPHEATA------- 314 (365)
T ss_dssp CCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT---CCEEEEEECCSSCEEEEEEEGGGT-------
T ss_pred ccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEccc---CcEEEEeccCCCceEEecccCCCC-------
Confidence 0 00000 11122 23344456788888999999999999 567776666667776666555443
Q ss_pred CCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 431 KGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 431 ~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
=++.....|.|.--.+++.
T Consensus 315 ------Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 315 ------GIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp ------EEEEEETTCEEEEEEECTT
T ss_pred ------cEEEEcCCCEEEEEEECcc
Confidence 3666668888877766654
No 335
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.24 E-value=1.7 Score=39.55 Aligned_cols=232 Identities=11% Similarity=0.100 Sum_probs=118.0
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
....|+|.|||+++++--..|.|++++...+.......+... ..........|+
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v--------------------------~~~g~~GllGia 86 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV--------------------------SPSGEGGLLGIA 86 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC--------------------------CCBTTBSEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce--------------------------eecCCCCceeeE
Confidence 467999999998777655489999998655543221111100 001345678899
Q ss_pred EcCC---CCEEEEE---eCCCCEEEEEcCCC----------eee-EEee-cCCCceeEEEEcCCCEEEEE-eC-------
Q 012007 243 LNAE---QGLLYSG---SWDKTLKVWRISDC----------KCL-ESIN-AHDDAINSVVAGFDSLVFTG-SA------- 296 (473)
Q Consensus 243 ~~~~---~~~l~s~---s~dg~v~vwd~~~~----------~~~-~~~~-~~~~~v~~l~~~~~~~l~s~-~~------- 296 (473)
++|+ +..|+.. ..++.|.-|.+..+ +.+ ..+. ........|.|.+++.|+.+ +.
T Consensus 87 ~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~ 166 (347)
T 3das_A 87 LSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLS 166 (347)
T ss_dssp ECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGT
T ss_pred eccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccc
Confidence 9985 4555553 23455666665441 111 1222 11224567899999844433 21
Q ss_pred ------CCcEEEEeCcccCCCcce----eeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCCcc--------
Q 012007 297 ------DGTVKVWRRELQGKGTKH----CLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEKHL-------- 357 (473)
Q Consensus 297 ------dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~-------- 357 (473)
.|.|.-.+.. +..... .......+|.. ...++|+|++.+.++-. .|+.=.|.-+..+.
T Consensus 167 qd~~~~~G~IlRi~~d--G~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~ 243 (347)
T 3das_A 167 QDRKSLGGKILRMTPD--GEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAE 243 (347)
T ss_dssp TCTTCSTTCEEEECTT--SSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCC
T ss_pred cCCCCCCCEEEEEeCC--CCccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCccc
Confidence 2444444433 210000 01122234433 46799999887665432 23222222111111
Q ss_pred ---------cccceeecCcceEEEEEe-cCCEEEEEeCCCcEEEEecCCCCc-eeEEEEecCCCCceeEEEEecCCC
Q 012007 358 ---------SHGGVLRGHKMAVLCLAA-AGNLVFSGSADRNICLWRREESGA-HSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 358 ---------~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.+...+..+......+.+ .|.+++..-..+.|....+...+. .+....+.+..+.+.+|+..||+.
T Consensus 244 g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~ 320 (347)
T 3das_A 244 GKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK 320 (347)
T ss_dssp SSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE
T ss_pred CCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCc
Confidence 011111112123344444 466666666666777667665321 122334455557899999999987
No 336
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.18 E-value=1.9 Score=39.55 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=22.8
Q ss_pred ccEEEEEEcc-------CCCEEEEeCCCCcEEEEecCC
Q 012007 325 NAVTALAVNQ-------ESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 325 ~~v~~l~~~~-------~~~~l~~~~~dg~i~iwd~~~ 355 (473)
..+..++|.. ++.++++....+.|...+++.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~ 308 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNG 308 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEET
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCC
Confidence 4677888864 467777777788888887764
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.07 E-value=1.1 Score=40.89 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=81.3
Q ss_pred eecCCCceeEEEEcCCCEEEEEeC-CCcEEEEeCcccCCCccee-eeeeeccCCccEEEEEEccC---CCEEEEe---CC
Q 012007 273 INAHDDAINSVVAGFDSLVFTGSA-DGTVKVWRRELQGKGTKHC-LAQVLLKHENAVTALAVNQE---SAVVYCG---SS 344 (473)
Q Consensus 273 ~~~~~~~v~~l~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~---~~~l~~~---~~ 344 (473)
+-..-...+.|++.|++.++++.. .|.|++++...+.. .... ..............|+++|+ +..|++. ..
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 333445678999999996666666 89999987542211 0000 00112234567899999995 3445443 23
Q ss_pred CCcEEEEecCCcc-------ccccee------ecCcceEEEEEecCCEEEEEeC-------------CCcEEEEecCCCC
Q 012007 345 DGLVNFWECEKHL-------SHGGVL------RGHKMAVLCLAAAGNLVFSGSA-------------DRNICLWRREESG 398 (473)
Q Consensus 345 dg~i~iwd~~~~~-------~~~~~~------~~~~~~v~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~ 398 (473)
++.|.-|.+.... ....++ ..|...-+.+.++|.+.++.+. .|.|.-.+....-
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 4556666554310 011111 2466666788888987777542 2444444443210
Q ss_pred ----c--eeEEEEecCCCCceeEEEEecCCC
Q 012007 399 ----A--HSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 399 ----~--~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
. ...+. -.+|.. ...++|+|++.
T Consensus 186 p~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~ 214 (347)
T 3das_A 186 APGNPFPGSPVY-SYGHRN-VQGLAWDDKQR 214 (347)
T ss_dssp CTTCSSTTCCEE-EBCCSB-CCEEEECTTCC
T ss_pred cCCCCCCCCeEE-eeCCCC-cceEEECCCCC
Confidence 0 11122 235543 57899999765
No 338
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.84 E-value=2.3 Score=38.92 Aligned_cols=200 Identities=4% Similarity=-0.054 Sum_probs=98.8
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCcc--cccc---ccCcccEEEEEEeCC---CCEEEEEeC----C----CeEEEEeCC
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKE--FSGF---KSNSGLVKAIIISGD---SNKIFTGHQ----D----GKIRIWKVS 191 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~--~~~~---~~h~~~V~~l~~s~~---~~~l~s~~~----d----g~i~vwd~~ 191 (473)
++.++|++++ +..+|.|++++.... +..+ .........|+++|+ +..|+.+.. + ..|..|+..
T Consensus 35 a~~pdG~l~V-~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~ 113 (354)
T 3a9g_A 35 APLGGGRYLV-TERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLD 113 (354)
T ss_dssp EEEETTEEEE-EETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEEC
T ss_pred EEcCCCeEEE-EeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEEC
Confidence 4456677444 455699999874322 1111 112356889999997 555555443 2 567677765
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC-------------CC
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD-------------KT 258 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-------------g~ 258 (473)
......... . . ++. . .-.........|+|.|+|.+.++.+.. |.
T Consensus 114 ~~~~~~~~~-~------~----------l~~--~----~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~ 170 (354)
T 3a9g_A 114 GSTFKLKEV-K------T----------LID--G----IPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGK 170 (354)
T ss_dssp SSSCCEEEE-E------E----------EEE--E----EECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSE
T ss_pred CCCcCcCcc-E------E----------EEE--c----CCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeE
Confidence 431100000 0 0 000 0 000011124679999999866664321 34
Q ss_pred EEEEEcCCCee--------eEEe-ecCCCceeEEEEcC-CCEEEEEeCCC----cEEEEeCcccCCC------------c
Q 012007 259 LKVWRISDCKC--------LESI-NAHDDAINSVVAGF-DSLVFTGSADG----TVKVWRRELQGKG------------T 312 (473)
Q Consensus 259 v~vwd~~~~~~--------~~~~-~~~~~~v~~l~~~~-~~~l~s~~~dg----~i~vwd~~~~~~~------------~ 312 (473)
|.-++.. ++. ...+ .++ .....+++.+ ++.|+++.... .|.+.. .+... .
T Consensus 171 I~ri~~d-G~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~ 246 (354)
T 3a9g_A 171 ILRVDEE-GRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGE 246 (354)
T ss_dssp EEEECTT-SCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTT
T ss_pred EEEEcCC-CCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCC
Confidence 4444432 220 1111 123 2346788988 56555554332 233332 11100 0
Q ss_pred ceeeeeeeccCCccEEEEEEc-------cCCCEEEEeCCCCcEEEEecCC
Q 012007 313 KHCLAQVLLKHENAVTALAVN-------QESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~-------~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
.................++|. .++.++++....+.|...++..
T Consensus 247 ~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 247 FVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp SCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred CcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 001111221223467888883 4677777777778888888874
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.64 Score=42.22 Aligned_cols=107 Identities=9% Similarity=0.012 Sum_probs=63.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE
Q 012007 174 NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG 253 (473)
Q Consensus 174 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 253 (473)
..++.++.||.|.-.|..+++..-........ ..+ ...... .+.+..++.+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~---p~~-------------------~~~~~~-------~~~~~~~~vv 61 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQ---PLI-------------------EIQEPS-------RLETYETLII 61 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSC---CSE-------------------ECCCSC-------TTTSSEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccC---CcE-------------------EecCCc-------cccCCcEEEE
Confidence 37888999999999999988776655432000 000 000000 0122234433
Q ss_pred --eCCCCEEEEEcCCCeeeEEeecC----CCceeE---EEE------cCCCEEEEEeCCCcEEEEeCcccC
Q 012007 254 --SWDKTLKVWRISDCKCLESINAH----DDAINS---VVA------GFDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 254 --s~dg~v~vwd~~~~~~~~~~~~~----~~~v~~---l~~------~~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
+.||.|..++..+|.....+... ..++.. ..+ +.++.+++|+.+|.+...|++++.
T Consensus 62 ~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 62 EPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp CCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred EECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 57999999999888655444321 112221 001 246789999999999999988654
No 340
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.15 Score=46.46 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=78.4
Q ss_pred CEEEEEeCCCCEEEEEcCCCeeeEEeecC-CCceeEEEE---cCCCEEEEE--eCCCcEEEEeCcccCCCcceeeeeeec
Q 012007 248 GLLYSGSWDKTLKVWRISDCKCLESINAH-DDAINSVVA---GFDSLVFTG--SADGTVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 248 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~---~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
.+++.++.||.|.-+|..+|+.+..++.. ..++....- ..++.++.+ +.||.|..++...+.. .........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~--~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ--KLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE--EEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE--Eeeeccccc
Confidence 57899999999999999999999988754 122222110 013344444 5899999998764311 111100000
Q ss_pred cCCccEEE---EEE-c----cCCCEEEEeCCCCcEEEEecCCcccccceeecCcc------eEEEEE-------ecCCEE
Q 012007 322 KHENAVTA---LAV-N----QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM------AVLCLA-------AAGNLV 380 (473)
Q Consensus 322 ~~~~~v~~---l~~-~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~v~~~~-------~~~~~l 380 (473)
-...++.. ..+ . ..+..+++|+.+|.+...|++++...-..-.+... ...|.. -.+..|
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 11122221 000 0 14567889999999999999887655332222111 011111 124567
Q ss_pred EEEeCCCcEEEEe
Q 012007 381 FSGSADRNICLWR 393 (473)
Q Consensus 381 ~s~~~dg~i~iwd 393 (473)
+.+..+..+.+.+
T Consensus 169 ~ig~~~y~v~~~~ 181 (339)
T 2be1_A 169 VIGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEEECEECC
T ss_pred EEecceEEEEEEC
Confidence 7777676666665
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.50 E-value=3.4 Score=39.32 Aligned_cols=107 Identities=12% Similarity=0.168 Sum_probs=58.2
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
....|+|.|+|+++++-...+.|++++..++.......+..... ..........|+
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~------------------------~~~g~~Gllgia 83 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN------------------------DADGQNGLLGFA 83 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC------------------------CTTSSCSEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcccc------------------------ccCCCCceeEEE
Confidence 45699999999877764433578888765444322211111000 000245677899
Q ss_pred EcCC---CCEEEEEeC-------------CCCEEEEEcCCC-------eeeE-Eeec-CCCceeEEEEcCCCEEEE
Q 012007 243 LNAE---QGLLYSGSW-------------DKTLKVWRISDC-------KCLE-SINA-HDDAINSVVAGFDSLVFT 293 (473)
Q Consensus 243 ~~~~---~~~l~s~s~-------------dg~v~vwd~~~~-------~~~~-~~~~-~~~~v~~l~~~~~~~l~s 293 (473)
|+|+ +..|+.+.. ...|.-+++... +.+. .+.. .......|+|.+++.|+.
T Consensus 84 ~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv 159 (454)
T 1cru_A 84 FHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYY 159 (454)
T ss_dssp ECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEE
T ss_pred ECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEE
Confidence 9996 666666542 134555555321 1111 1221 223578899999994443
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.45 E-value=2.6 Score=42.70 Aligned_cols=149 Identities=9% Similarity=0.101 Sum_probs=75.0
Q ss_pred CCCCEEEEEeCC----CCEEEEEcCCCeeeEEe--------ecCCCceeEEEEc-CCCEEEEEeCC------CcEEEEeC
Q 012007 245 AEQGLLYSGSWD----KTLKVWRISDCKCLESI--------NAHDDAINSVVAG-FDSLVFTGSAD------GTVKVWRR 305 (473)
Q Consensus 245 ~~~~~l~s~s~d----g~v~vwd~~~~~~~~~~--------~~~~~~v~~l~~~-~~~~l~s~~~d------g~i~vwd~ 305 (473)
.++.+++.|+.+ ..+.+||..+.+-...- ......-..+.+. .+.+++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 45889998776533222 1111122223332 33356666643 34778887
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC--cEEEEecCCcccccce----eecCc--ceEEEEEec-
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG--LVNFWECEKHLSHGGV----LRGHK--MAVLCLAAA- 376 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~----~~~~~--~~v~~~~~~- 376 (473)
... .+.....+...... .+++...++.+++.|+.++ .+.+||..+..-.... ..... .....+..+
T Consensus 476 ~t~----~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 476 KTR----EWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTT----EEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCC----cEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 632 22222222211122 2233323778888887655 6899998753211100 11011 111222333
Q ss_pred CCEEEEEeC--C-----CcEEEEecCCCC
Q 012007 377 GNLVFSGSA--D-----RNICLWRREESG 398 (473)
Q Consensus 377 ~~~l~s~~~--d-----g~i~iwd~~~~~ 398 (473)
+.+++.|+. + +.+.+||+.+..
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 667777775 2 358899998744
No 343
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.36 E-value=3.4 Score=38.69 Aligned_cols=254 Identities=13% Similarity=0.149 Sum_probs=146.5
Q ss_pred CCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceE
Q 012007 142 SKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYV 221 (473)
Q Consensus 142 dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (473)
+..|.|-|+...-...+. .-.-.+.-.+|..+.||-=. ...+.|+|+++........
T Consensus 47 ~~~vvIiDl~~~~~~~rr-pi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~--------------------- 103 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRR-PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--------------------- 103 (494)
T ss_dssp CCEEEEEETTSTTSCEEE-ECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE---------------------
T ss_pred CCeEEEEECCCCCcceec-ccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee---------------------
Confidence 346778787643222111 11112344677777666654 6789999999887655444
Q ss_pred EEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-CeeeEEeecCC----CceeEEEEcCCC--EEEEE
Q 012007 222 EVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESINAHD----DAINSVVAGFDS--LVFTG 294 (473)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~----~~v~~l~~~~~~--~l~s~ 294 (473)
....|..-.|-.+. .|+-.+ +..|+-|++.. ..++..+..|. ..|..-..+++. .+++|
T Consensus 104 ------------~~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~G 169 (494)
T 1bpo_A 104 ------------MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG 169 (494)
T ss_dssp ------------CSSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEE
T ss_pred ------------cCCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEe
Confidence 34556667776544 444444 46899999964 34555665443 344445556665 33333
Q ss_pred e------CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC---CEEEEeCC---CCcEEEEecCCcc----c
Q 012007 295 S------ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES---AVVYCGSS---DGLVNFWECEKHL----S 358 (473)
Q Consensus 295 ~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~~~~~---dg~i~iwd~~~~~----~ 358 (473)
- -.|.+.+|..+.. ..+.+.+|...-..+.+..+. .+++.+.. .+.++|.++.... .
T Consensus 170 I~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~ 242 (494)
T 1bpo_A 170 ISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP 242 (494)
T ss_dssp EEEETTEEEEEEEEEESTTC-------CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCC
T ss_pred ecccCCcccceEEEeecccc-------ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCC
Confidence 2 2477889987521 235566665544444333211 23333322 3789999985431 0
Q ss_pred cc----ceeec----CcceE-EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccc
Q 012007 359 HG----GVLRG----HKMAV-LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYH 429 (473)
Q Consensus 359 ~~----~~~~~----~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~ 429 (473)
.. ..... ..-+| +.++..-..++.-+.-|.|++||+.+ ..++..-+--..+|..-+-.....
T Consensus 243 f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleT---gt~i~~nrIs~~~iF~t~~~~~~~------ 313 (494)
T 1bpo_A 243 FPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET---GTCIYMNRISGETIFVTAPHEATA------ 313 (494)
T ss_dssp CCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT---CCEEEEEECCSSCEEEEEEETTTT------
T ss_pred ccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccc---ceeeeeecccCCceEEecccCCCC------
Confidence 00 00000 11122 34445566788888999999999999 566766666667776666655544
Q ss_pred cCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 430 QKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 430 ~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
=++.....|.|.--.+.+.
T Consensus 314 -------Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 314 -------GIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp -------EEEEEETTCEEEEEEECTT
T ss_pred -------cEEEEccCceEEEEEEccc
Confidence 3666668888777666654
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.29 E-value=3.1 Score=37.94 Aligned_cols=138 Identities=10% Similarity=-0.006 Sum_probs=63.2
Q ss_pred CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC------CCcEEEEec--CCcc-cccceeecC--
Q 012007 298 GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS------DGLVNFWEC--EKHL-SHGGVLRGH-- 366 (473)
Q Consensus 298 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~------dg~i~iwd~--~~~~-~~~~~~~~~-- 366 (473)
..+.+||+... .......+......-.+++.. ++++++.|+. ...+.+||+ .+.. .....+...
T Consensus 168 ~~v~~yd~~~~----~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~ 242 (357)
T 2uvk_A 168 KFLLSFDPSTQ----QWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG 242 (357)
T ss_dssp CEEEEEETTTT----EEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred ccEEEEeCCCC----cEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence 46888887632 222222222111110222222 5566667664 235777876 3211 111111111
Q ss_pred cceEEEEEecCCEEEEEeCC----------------------CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCC
Q 012007 367 KMAVLCLAAAGNLVFSGSAD----------------------RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDH 424 (473)
Q Consensus 367 ~~~v~~~~~~~~~l~s~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 424 (473)
.....+...++.+++.|+.+ ..+.+||+.+ ..+..+..+......-.++ .-++.
T Consensus 243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~~~--~~~~~- 318 (357)
T 2uvk_A 243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHN-GKWDKSGELSQGRAYGVSL--PWNNS- 318 (357)
T ss_dssp CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSEEE--EETTE-
T ss_pred cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCC-CceeeCCCCCCCcccceeE--EeCCE-
Confidence 11223455677888887742 2577899886 3455555544322222222 23444
Q ss_pred CcccccCCCccEEEEEeeCCC------cEEEEEcCCCC
Q 012007 425 DHEYHQKGDQRWTVYSGSLDK------SVKVWRVSEHA 456 (473)
Q Consensus 425 ~~~~~~~~~~~~~l~s~s~Dg------~v~iW~i~~~~ 456 (473)
+++.||.++ .|.++++..++
T Consensus 319 ------------i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 319 ------------LLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp ------------EEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred ------------EEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 777788653 34555776554
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.20 E-value=4 Score=38.86 Aligned_cols=109 Identities=5% Similarity=0.042 Sum_probs=60.6
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee--EEeec------CCCceeEEEEcC----CCEEEEEeC------
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL--ESINA------HDDAINSVVAGF----DSLVFTGSA------ 296 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~~~------~~~~v~~l~~~~----~~~l~s~~~------ 296 (473)
-.....|+|.|+|+++++-...+.|++++..+++.. ..+.. ....+..|+++| ++.|+....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999986666544346888876555432 22221 235667899998 455554432
Q ss_pred -------CCcEEEEeCcccCC--Ccceeeeeeec-cCCccEEEEEEccCCCEEEEeC
Q 012007 297 -------DGTVKVWRRELQGK--GTKHCLAQVLL-KHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 297 -------dg~i~vwd~~~~~~--~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
...|.-|+...... .....+...+. ........|+|.|+|.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 12444444432110 01111111111 1223478999999998777644
No 346
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.83 E-value=6.4 Score=42.85 Aligned_cols=253 Identities=13% Similarity=0.151 Sum_probs=130.9
Q ss_pred CcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEE
Q 012007 143 KNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVE 222 (473)
Q Consensus 143 g~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (473)
..|.|-|+...-...+- .-.--+.-.+|..+.||-=. ..++.|+|+++........
T Consensus 48 ~~vvIidl~~~~~~~rr-pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~---------------------- 103 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRR-PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT---------------------- 103 (1630)
T ss_pred ceEEEEECCCCCCcccc-cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc----------------------
Confidence 36777776643222111 11112233566666665543 6789999998876544333
Q ss_pred EeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-CeeeEEeecC----CCceeEEEEcCCC--EEEEEe
Q 012007 223 VRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESINAH----DDAINSVVAGFDS--LVFTGS 295 (473)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~----~~~v~~l~~~~~~--~l~s~~ 295 (473)
....|.--.|-.+.. |+-.+ +..|+-|++.. ..++..+..| ...|..-..+++. .+++|-
T Consensus 104 -----------~~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi 170 (1630)
T 1xi4_A 104 -----------MTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI 170 (1630)
T ss_pred -----------cCCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEee
Confidence 345666777765544 33333 35799999964 3444444433 2345444555555 333332
Q ss_pred ------CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc--cCC-CEEEEeC---CCCcEEEEecCCc---c-cc
Q 012007 296 ------ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN--QES-AVVYCGS---SDGLVNFWECEKH---L-SH 359 (473)
Q Consensus 296 ------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~-~~l~~~~---~dg~i~iwd~~~~---~-~~ 359 (473)
-.|.+.+|..+.. ..+.+.+|...-..+... +.. .+++.+. ..+.++|.++... . ..
T Consensus 171 ~~~~~~v~G~mQLyS~er~-------~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f 243 (1630)
T 1xi4_A 171 SAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (1630)
T ss_pred ccCCCcccceeeeeecccc-------cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC
Confidence 3578889987522 223444554443333332 111 1222221 1368999888543 0 00
Q ss_pred ----cceeec----CcceE-EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccccc
Q 012007 360 ----GGVLRG----HKMAV-LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQ 430 (473)
Q Consensus 360 ----~~~~~~----~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~ 430 (473)
...... ..-+| +.++..-..+..-+.-|.|.+||+.+ ..++..-+-...+|...+-.....
T Consensus 244 ~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t---~~~i~~~ris~~~iF~~~~~~~~~------- 313 (1630)
T 1xi4_A 244 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET---GTCIYMNRISGETIFVTAPHEATA------- 313 (1630)
T ss_pred ccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEeccc---chhhhhccccCCceEEeccCCCCC-------
Confidence 001111 11111 33344456777888899999999999 455544443444554444433322
Q ss_pred CCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 431 KGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 431 ~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
-++.....|.|.--.+.+.
T Consensus 314 ------g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 314 ------GIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred ------ceEEEcCCceEEEEEEccc
Confidence 1444446666655555443
No 347
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=88.42 E-value=15 Score=33.84 Aligned_cols=246 Identities=11% Similarity=0.088 Sum_probs=126.6
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCCc----------c---ccccc-cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNLK----------E---FSGFK-SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~~----------~---~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
.|..++......+.-..||.|..|-... . ...+. .....+..++++......+.-..||.|..|-.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 3556666666666667788888883210 0 00011 11234556677666667777788999999965
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee--ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR--HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC- 267 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~- 267 (473)
......-... .. .... ...+. ....|..++. .....+.-..||.|+.|-....
T Consensus 134 n~~GqLG~g~-----~~-----------~~~~------p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~G 189 (389)
T 3kci_A 134 AEDGKLGHGN-----RS-----------PCDR------PRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYG 189 (389)
T ss_dssp CGGGTTCSSS-----CC-----------CEEE------EEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGG
T ss_pred CCCCcCCCCC-----Cc-----------cCcC------CeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCC
Confidence 4321100000 00 0000 00000 1123444444 3345556667888999965321
Q ss_pred e----------eeEEee-cCCCceeEEEEcC-CCEEEEEeCCCcEEEEeCcccCCC------cceeeeeeeccCCccEEE
Q 012007 268 K----------CLESIN-AHDDAINSVVAGF-DSLVFTGSADGTVKVWRRELQGKG------TKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 268 ~----------~~~~~~-~~~~~v~~l~~~~-~~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~v~~ 329 (473)
+ ....+. .....|..++... +...+....||.|..|-....+.. ....+..........|..
T Consensus 190 qLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~ 269 (389)
T 3kci_A 190 RLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVK 269 (389)
T ss_dssp TTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEE
Confidence 0 111111 1233566776654 346666778999999965432210 111111111112234666
Q ss_pred EEEccCCCEEEEeCCCCcEEEEecCCcccc-----------cceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 330 LAVNQESAVVYCGSSDGLVNFWECEKHLSH-----------GGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 330 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
++.... ..++-..||.|..|-....-++ ..+.......+..++....+.++-..||.|+.|=...
T Consensus 270 v~~G~~--hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 270 VECGSQ--FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEETT--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred EeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence 665433 3444567899999965432111 0011111234677777777777778899999997664
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=87.85 E-value=14 Score=32.75 Aligned_cols=126 Identities=9% Similarity=0.068 Sum_probs=62.2
Q ss_pred EEcCCCCEEEEEeC-CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 242 SLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 242 ~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
.++++++.|+-.+. ...|.+.++..+.....+.. ... ..+.|++ .|+-...++.-+|+.....+.. . ..
T Consensus 151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~----~~ 221 (302)
T 3s25_A 151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-P----VV 221 (302)
T ss_dssp CSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-C----EE
T ss_pred EeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-e----EE
Confidence 45667777776654 57788888876654433332 222 2234554 5554443322344443322221 1 11
Q ss_pred eccCCccEEEEEEccCCCEEEEeC--CCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEe
Q 012007 320 LLKHENAVTALAVNQESAVVYCGS--SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 384 (473)
+. ...+ ..|+|++.+|+-+. ..+.|..-++..... ..+..+ .+..+++.+.+|+-..
T Consensus 222 Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r-~~l~~~---~~~~i~i~~d~Iy~td 280 (302)
T 3s25_A 222 LT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGF-KELAKG---EFCNINVTSQYVYFTD 280 (302)
T ss_dssp CS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCC-EEEEES---CEEEEEECSSEEEEEE
T ss_pred Ee--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCcc-EEeeCC---ccceEEEeCCEEEEEE
Confidence 11 1223 33777888877652 245666666664322 122222 2345666666555443
No 349
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=86.76 E-value=15 Score=32.01 Aligned_cols=213 Identities=11% Similarity=0.102 Sum_probs=115.6
Q ss_pred ccccceeeeeeec---ccEEEEEe--cCCEEEEeeCCCcEEEeeCC-----ccccccccCcccEEEEEEeC--CCCEEEE
Q 012007 111 SCNGLIGSIVRKE---GHIYSLAA--SGDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIISG--DSNKIFT 178 (473)
Q Consensus 111 ~~~~~~~~l~~h~---~~V~~~~~--~g~~l~tg~~dg~i~vwd~~-----~~~~~~~~h~~~V~~l~~s~--~~~~l~s 178 (473)
+..+.++...+|. +.+..+.. ..+.|+..+.+|.++--... .... +......|..+.. . +..+++.
T Consensus 8 s~~Gwir~~~g~~~~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~ 85 (276)
T 3no0_A 8 LQDGSIIPVEELPLEKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLL 85 (276)
T ss_dssp ETTSEEEEGGGCCSSCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEE
T ss_pred cCCceeeeccCCCCCCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEE
Confidence 4556666777763 33544432 34556666777876653321 1111 2223456666644 4 4678999
Q ss_pred EeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCC
Q 012007 179 GHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT 258 (473)
Q Consensus 179 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~ 258 (473)
.+.+|.|+-..+..-. .... ......+...+.+..+........++..+..|.
T Consensus 86 ~T~~G~iKr~~l~~~~-~~~~--------------------------G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~ 138 (276)
T 3no0_A 86 ATKKGYVKKIPLAEFE-YKAQ--------------------------GMPIIKLTEGDEVVSIASSVDETHILLFTKKGR 138 (276)
T ss_dssp EETTSEEEEEEGGGTT-TCST--------------------------TEECSCCCTTCCEEEEEECCSSCEEEEEETTSE
T ss_pred EeCCCEEEEEEHHHhh-hhcC--------------------------CeEEEecCCCCEEEEEEEeCCCCEEEEEECCCE
Confidence 9999999998875432 1000 000111123345555555556667888888999
Q ss_pred EEEEEcCC---------CeeeEEeecCCCceeEEE-EcCCCEEEEEeCCCcEEEEeCcccCCCcc-eeeeeeeccCCccE
Q 012007 259 LKVWRISD---------CKCLESINAHDDAINSVV-AGFDSLVFTGSADGTVKVWRRELQGKGTK-HCLAQVLLKHENAV 327 (473)
Q Consensus 259 v~vwd~~~---------~~~~~~~~~~~~~v~~l~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~v 327 (473)
+..+.... |.....+.. .+.|..+. ..++..++..+..|.++...+..-..... ..-...+ ...+.+
T Consensus 139 ~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~l 216 (276)
T 3no0_A 139 VARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTL 216 (276)
T ss_dssp EEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCE
T ss_pred EEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcE
Confidence 88887632 222223333 34455544 44455888999999999988753221110 0001111 223445
Q ss_pred EEEEEccCCCEEEEeCCCCcEEE--EecC
Q 012007 328 TALAVNQESAVVYCGSSDGLVNF--WECE 354 (473)
Q Consensus 328 ~~l~~~~~~~~l~~~~~dg~i~i--wd~~ 354 (473)
..+....+...++..+.+|.+.. ++..
T Consensus 217 v~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 217 VDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 44443333445666677777777 7654
No 350
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.90 E-value=27 Score=33.96 Aligned_cols=125 Identities=12% Similarity=-0.022 Sum_probs=73.1
Q ss_pred eeEEEEcCCC--EEEEEeCCCcEEEEeCcccCC-------CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 280 INSVVAGFDS--LVFTGSADGTVKVWRRELQGK-------GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 280 v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
...+..+|+| .+++|-.+.++.++|++.-.. ........... -.......+|.++|....+...|..|.-
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEE
Confidence 4456788898 455666789999999873111 01111111222 3445678999999966667778999999
Q ss_pred EecCCcc---------cccceeecCcceEEEE-------EecCCEEEEEe---CCCc----------EEEEecCCCCcee
Q 012007 351 WECEKHL---------SHGGVLRGHKMAVLCL-------AAAGNLVFSGS---ADRN----------ICLWRREESGAHS 401 (473)
Q Consensus 351 wd~~~~~---------~~~~~~~~~~~~v~~~-------~~~~~~l~s~~---~dg~----------i~iwd~~~~~~~~ 401 (473)
|++.... .....+.-|-..-.-. .++|++|++.. .|.. -+++|+.. ...+
T Consensus 404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG-dkM~ 482 (638)
T 3sbq_A 404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG-DEMK 482 (638)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS-SSCE
T ss_pred EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC-CceE
Confidence 9986421 1222222232222211 35788998875 3543 36788765 3345
Q ss_pred EEEEe
Q 012007 402 CLAVL 406 (473)
Q Consensus 402 ~~~~~ 406 (473)
++...
T Consensus 483 lv~D~ 487 (638)
T 3sbq_A 483 LVHDG 487 (638)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 55443
No 351
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=85.89 E-value=23 Score=33.10 Aligned_cols=243 Identities=8% Similarity=-0.002 Sum_probs=125.0
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCCc--c------------ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNLK--E------------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~~--~------------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
.|..++..+...+.-..||.|..|-... . .-........|..|+.... ..+.-..||.|..|-.
T Consensus 76 ~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~--hs~al~~~G~v~~wG~ 153 (423)
T 3mvd_K 76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDS--HSACLLEDGRVFAWGS 153 (423)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSS--EEEEEETTSCEEEEEC
T ss_pred CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcC--eEEEEeCCCeEEEEeC
Confidence 4777887777777778899999993210 0 0000011245666665433 5556678999999975
Q ss_pred --CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe
Q 012007 191 --SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 191 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
......-. .. .... .....+.....|..|+.. ....+.-..||.|+.|-....-
T Consensus 154 ~~n~~GqlG~---~~--~~~~-----------------~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~G 209 (423)
T 3mvd_K 154 FRDSHGNMGL---TI--DGNK-----------------RTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQG 209 (423)
T ss_dssp EECSSSEEES---BT--TBCE-----------------EEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTS
T ss_pred CCCCCCCcCc---CC--CCCC-----------------ceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCC
Confidence 32211100 00 0000 000000122345555543 3455566778999999643211
Q ss_pred -----------------------eeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCC------cceeeeee
Q 012007 269 -----------------------CLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG------TKHCLAQV 319 (473)
Q Consensus 269 -----------------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~ 319 (473)
+..........|..++......++.-..+|.|..|-....... ........
T Consensus 210 qLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~ 289 (423)
T 3mvd_K 210 QLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPI 289 (423)
T ss_dssp TTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEE
T ss_pred ccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeE
Confidence 1111111223456666554444444478999999975432210 00001111
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc-----------cceeecCcceEEEEEecCCEEEEEeCCCc
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH-----------GGVLRGHKMAVLCLAAAGNLVFSGSADRN 388 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 388 (473)
......|..|+... ...++-..||.|..|-....-++ ......-...+..++.-..+.++-..||.
T Consensus 290 -~~~~~~v~~ia~G~--~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~ 366 (423)
T 3mvd_K 290 -KTELKDIRHIAGGQ--HHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGK 366 (423)
T ss_dssp -EECCCSEEEEEECS--SEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSC
T ss_pred -EcCCCCeEEEEccc--CeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCC
Confidence 11134566666543 34445567899999965321111 00111111257777777777777788999
Q ss_pred EEEEecCC
Q 012007 389 ICLWRREE 396 (473)
Q Consensus 389 i~iwd~~~ 396 (473)
|+.|=...
T Consensus 367 v~~wG~n~ 374 (423)
T 3mvd_K 367 LYSWGSGV 374 (423)
T ss_dssp EEEEECCT
T ss_pred EEEECCCC
Confidence 99997654
No 352
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=84.45 E-value=21 Score=31.58 Aligned_cols=136 Identities=13% Similarity=0.145 Sum_probs=70.3
Q ss_pred EEcCCCCEEEEEe--CCC--CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCccee
Q 012007 242 SLNAEQGLLYSGS--WDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 242 ~~~~~~~~l~s~s--~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
.|++++++|+-.. .++ .|...++. +.....+..+.. ..+.+++ +.++......|.+-++.... ..
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~----~~ 180 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS----EA 180 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE----EE
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC----EE
Confidence 5677888888765 334 45555554 333344443322 2233343 44444445677777764211 11
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCC--CcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeC--CCcEEE
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSD--GLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSA--DRNICL 391 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~--dg~i~i 391 (473)
. ... .... ..+.|++.+|+-...+ ..|..-++..... ..+.. ..+..+++++.+|+-+.. .+.|..
T Consensus 181 ~--l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--~~Lt~--~~~~~~~~~g~~Iy~~~~~~~~~i~~ 250 (302)
T 3s25_A 181 L--FYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP--VVLTE--ANIEHYNVYGSLIFYQRGGDNPALCV 250 (302)
T ss_dssp E--EEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC--EECSC--SCEEEEEEETTEEEEEECSSSCEEEE
T ss_pred E--EeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe--EEEeC--CCcceEEECCCEEEEEECCCCcEEEE
Confidence 1 111 1222 3456888887765443 3566666654332 22222 234568999998876532 355666
Q ss_pred EecCC
Q 012007 392 WRREE 396 (473)
Q Consensus 392 wd~~~ 396 (473)
-+++.
T Consensus 251 ~~~DG 255 (302)
T 3s25_A 251 VKNDG 255 (302)
T ss_dssp EETTS
T ss_pred EECCC
Confidence 66655
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.86 E-value=15 Score=38.69 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=33.8
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
..+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356777888888999999999999999999999988753
No 354
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=80.57 E-value=34 Score=31.27 Aligned_cols=159 Identities=16% Similarity=0.099 Sum_probs=87.9
Q ss_pred eCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCE
Q 012007 170 SGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL 249 (473)
Q Consensus 170 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 249 (473)
-++..++++.+.+|.|+--.+..-...... .+......+...+.+..+........
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~------------------------g~g~~~~~lke~D~l~~~~~~~t~d~ 59 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRG------------------------GRGRSAASTKEEDFIDQLWLVNTHDT 59 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCC------------------------CCCSEEEECSCCCCEEEEEEECTTCE
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccC------------------------CCCceecccCCCCEEEEEEEecCCCE
Confidence 467778999999999986544221100000 00001111124556666666666677
Q ss_pred EEEEeCCCCEEEEEcC---------CCeeeEE---eecCCCceeEEEEc----CCCEEEEEeCCCcEEEEeCcccCCCc-
Q 012007 250 LYSGSWDKTLKVWRIS---------DCKCLES---INAHDDAINSVVAG----FDSLVFTGSADGTVKVWRRELQGKGT- 312 (473)
Q Consensus 250 l~s~s~dg~v~vwd~~---------~~~~~~~---~~~~~~~v~~l~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~- 312 (473)
|+..+..|.++-+... .|..+.. +. ....|.++... ++.+|+.++..|.++...+.......
T Consensus 60 ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~ 138 (370)
T 3l6v_A 60 LLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLA 138 (370)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCT
T ss_pred EEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccC
Confidence 7777778887766542 2333221 22 23455555432 33489999999999998875432211
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
.......+.. ...+..+....+...|+..+.+|.+..++..
T Consensus 139 ~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 139 RGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp TCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGG
T ss_pred CceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEcc
Confidence 1111222333 4455555555555667777888888877654
No 355
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=79.90 E-value=38 Score=31.36 Aligned_cols=290 Identities=11% Similarity=0.094 Sum_probs=142.5
Q ss_pred ccEEEEEecCCEEEEeeCCCcEEEeeCCc--c-----------ccccc-cCcccEEEEEEeCCCCEEEEEeCC-CeEEEE
Q 012007 124 GHIYSLAASGDLLYTGSDSKNIRVWKNLK--E-----------FSGFK-SNSGLVKAIIISGDSNKIFTGHQD-GKIRIW 188 (473)
Q Consensus 124 ~~V~~~~~~g~~l~tg~~dg~i~vwd~~~--~-----------~~~~~-~h~~~V~~l~~s~~~~~l~s~~~d-g~i~vw 188 (473)
..|..++.-+...+.-..||.|..|=... . ...+. .....|..|+...+ +.+.-..| +.|..|
T Consensus 16 ~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVYSW 93 (406)
T ss_dssp CCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEEEE
T ss_pred cceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEEEE
Confidence 34667777766666667788888883110 0 00011 11235667666433 44444455 489999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC- 267 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~- 267 (473)
-.......-... . . ....... ...-....|..|+.. ....+.-..||.|+.|-....
T Consensus 94 G~n~~GqLG~g~-----~-~----------~~~~p~~----v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~G 151 (406)
T 4d9s_A 94 GWGDFGRLGHGN-----S-S----------DLFTPLP----IKALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNG 151 (406)
T ss_dssp ECCGGGTTCSSS-----C-C----------CEEEEEE----CGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTS
T ss_pred cCCCCcCCCCCC-----C-C----------ccccceE----ecccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCc
Confidence 653321100000 0 0 0000000 000012245555543 345566678899999965421
Q ss_pred e----------eeEEeec-CCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCC------cceeeeeeeccCCccEEEE
Q 012007 268 K----------CLESINA-HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG------TKHCLAQVLLKHENAVTAL 330 (473)
Q Consensus 268 ~----------~~~~~~~-~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~v~~l 330 (473)
+ ....+.. ....|..++.... ..++...+|.|..|-....+.. ....+..........|..+
T Consensus 152 qLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~v 230 (406)
T 4d9s_A 152 QLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMV 230 (406)
T ss_dssp TTCSSSCCCEEEEEECGGGTTCCEEEEEECSS-EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEE
T ss_pred cCCCCCCCCcccceEecccCCCcEEEEecCCC-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEE
Confidence 1 1111111 1235666665433 4555578999999965432210 1111111111122456666
Q ss_pred EEccCCCEEEEeCCCCcEEEEecCCccccc-----------ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCC-
Q 012007 331 AVNQESAVVYCGSSDGLVNFWECEKHLSHG-----------GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESG- 398 (473)
Q Consensus 331 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~- 398 (473)
+... ...++-..+|.|+.|-....-++. .........+..++.-..+.++-..||.|+.|=....+
T Consensus 231 a~G~--~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~Gq 308 (406)
T 4d9s_A 231 ACGW--RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQ 308 (406)
T ss_dssp EECS--SEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTST
T ss_pred EECC--CcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCC
Confidence 5543 344455678899998654321110 00011123466777777777777889999999654311
Q ss_pred --------ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 399 --------AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 399 --------~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
...+..........|..|+.-.. ..+.-..||.|+.|--...
T Consensus 309 LG~g~~~~~~~p~~v~~~~~~~v~~va~G~~---------------hs~alt~~G~v~~wG~n~~ 358 (406)
T 4d9s_A 309 VGVGNNLDQCSPVQVRFPDDQKVVQVSCGWR---------------HTLAVTERNNVFAWGRGTN 358 (406)
T ss_dssp TCSSSSSCEEEEEEECCGGGCCEEEEEECSS---------------EEEEEETTSCEEEEECCTT
T ss_pred CCCCCCCCCccCEEEeccCCCcEEEEEeCCC---------------eEEEEeCCCCEEEecCCCC
Confidence 11122211112234666665443 2444457899999987654
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.86 E-value=64 Score=33.91 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=26.2
Q ss_pred ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 412 PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 412 ~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.|.+++..++.. ++++-+.|+++|||++.++.
T Consensus 237 ~~~~~~~~~~~~-------------~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 237 TIISMIFLSTYN-------------VLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp CEEEEEEETTTT-------------EEEEEETTCEEEEEETTTTE
T ss_pred eEEEEeecCCCc-------------EEEEEECCCEEEEEECCCCC
Confidence 456667766666 89999999999999998875
No 357
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=79.35 E-value=39 Score=31.09 Aligned_cols=204 Identities=14% Similarity=0.121 Sum_probs=110.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-----------eeeEEeec-CCCceeEEEEcCCCEEEEEeCCCcEEEEe
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-----------KCLESINA-HDDAINSVVAGFDSLVFTGSADGTVKVWR 304 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~-----------~~~~~~~~-~~~~v~~l~~~~~~~l~s~~~dg~i~vwd 304 (473)
.+..++++......+.-..||.|+.|-.... .....+.. ....|..++.... ..++...+|.|..|-
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~-hs~alt~~G~v~~wG 184 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA-HSACVTAAGDLYTWG 184 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS-EEEEEETTSCEEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC-eEEEEeCCCeEEEeC
Confidence 3445666666667777788999999964321 11111211 1235666665433 455567899999997
Q ss_pred CcccCCC------cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc-----------ceeecCc
Q 012007 305 RELQGKG------TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG-----------GVLRGHK 367 (473)
Q Consensus 305 ~~~~~~~------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------~~~~~~~ 367 (473)
....+.. ....+..........|..++........++-..||.|..|-....-++. .......
T Consensus 185 ~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 264 (389)
T 3kci_A 185 KGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG 264 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT
T ss_pred CCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCC
Confidence 5432110 1111111112223457777765434556666789999999654321110 0001112
Q ss_pred ceEEEEEecCCEEEEEeCCCcEEEEecCCCC---------ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEE
Q 012007 368 MAVLCLAAAGNLVFSGSADRNICLWRREESG---------AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTV 438 (473)
Q Consensus 368 ~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l 438 (473)
..+..++.-..+.++-..||.|+.|=....+ ...+..........|..|+.... ..
T Consensus 265 ~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~---------------h~ 329 (389)
T 3kci_A 265 LGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSL---------------HC 329 (389)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS---------------EE
T ss_pred CcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccC---------------eE
Confidence 2466777777777777889999999754310 01111111111234666665443 23
Q ss_pred EEeeCCCcEEEEEcCCCC
Q 012007 439 YSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 439 ~s~s~Dg~v~iW~i~~~~ 456 (473)
+....||.|+.|-.....
T Consensus 330 ~al~~~G~v~~wG~n~~G 347 (389)
T 3kci_A 330 VCCTEDGEVYTWGDNDEG 347 (389)
T ss_dssp EEEETTCCEEEEECCTTS
T ss_pred EEECCCCCEEEeeCCCCC
Confidence 445689999999887543
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=77.94 E-value=42 Score=30.76 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=53.7
Q ss_pred CeeEEEEcC-C-CCEEEEEeCCCCEEEEEcCCCeeeEEee-------------------cCCCceeEEEEcCC--CEEEE
Q 012007 237 AVSCLSLNA-E-QGLLYSGSWDKTLKVWRISDCKCLESIN-------------------AHDDAINSVVAGFD--SLVFT 293 (473)
Q Consensus 237 ~v~~l~~~~-~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~-------------------~~~~~v~~l~~~~~--~~l~s 293 (473)
.|.+|++.| + ...|+++...+.|...+ ..++.-..+. .....+.+|.+.|. +.++.
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 577888886 2 45666666556554442 1222222221 01235778888763 35555
Q ss_pred EeCCCcEEEEeCcccCCCcceeeeee-ecc---------CCccEEEEEEccC-CCEEEEeCCCCcEEEE
Q 012007 294 GSADGTVKVWRRELQGKGTKHCLAQV-LLK---------HENAVTALAVNQE-SAVVYCGSSDGLVNFW 351 (473)
Q Consensus 294 ~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~---------~~~~v~~l~~~~~-~~~l~~~~~dg~i~iw 351 (473)
+..++.|... ...++ ....... ... ....+.+|+++|. ...|+++...+ |...
T Consensus 195 g~~~ggl~~s--~DgG~--tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 195 GMSSGGVFES--TDAGT--DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EEETBEEEEE--SSTTS--SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred EECCCCEEEE--CCCCC--CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 5544444332 22221 1111110 000 0135889999985 35666666555 4433
No 359
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=77.88 E-value=37 Score=30.14 Aligned_cols=199 Identities=11% Similarity=0.053 Sum_probs=107.4
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEE
Q 012007 171 GDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLL 250 (473)
Q Consensus 171 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 250 (473)
++..++++.+.+|.|+--.+..-........ ......+...+.+..+........+
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~------------------------g~~~~~lke~D~l~~~~~~~~~~~l 61 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGK------------------------GLSSFDLNDGDEIVIALCVNTHDYL 61 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCC------------------------CEECCCCCTTCCEEEEEEEETTCEE
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCC------------------------CceecccCCCCEEEEEEEECCCCEE
Confidence 4566888899999998776543321100000 0000011133445555555556677
Q ss_pred EEEeCCCCEEEEEcCC---------Cee---eEEeecCCCceeEEEEc----CCCEEEEEeCCCcEEEEeCcccCCCc-c
Q 012007 251 YSGSWDKTLKVWRISD---------CKC---LESINAHDDAINSVVAG----FDSLVFTGSADGTVKVWRRELQGKGT-K 313 (473)
Q Consensus 251 ~s~s~dg~v~vwd~~~---------~~~---~~~~~~~~~~v~~l~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~-~ 313 (473)
+..+..|.++-..... |.. ...+.. .+.|..+... .+..++..+..|.++...+....... .
T Consensus 62 l~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~ 140 (312)
T 1suu_A 62 FMISNEGKLYLINAYEIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSR 140 (312)
T ss_dssp EEEETTSEEEEEEGGGSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----
T ss_pred EEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCC
Confidence 7788888877776532 111 111222 2344444332 34578888999999998875432111 1
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc--------ceeecCcceEEEEEe--cCCEEEEE
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG--------GVLRGHKMAVLCLAA--AGNLVFSG 383 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~v~~~~~--~~~~l~s~ 383 (473)
......+.. ...+..+....+...++..+.+|.+..+....-.... ..+. ....+..+.. ++..|++.
T Consensus 141 G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~v 218 (312)
T 1suu_A 141 GVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIV 218 (312)
T ss_dssp CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEE
T ss_pred cEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEE
Confidence 111222333 4556666555555677788889999888765311110 0111 1234444433 46678888
Q ss_pred eCCCcEEEEecCC
Q 012007 384 SADRNICLWRREE 396 (473)
Q Consensus 384 ~~dg~i~iwd~~~ 396 (473)
+..|..+..++..
T Consensus 219 t~~G~~kr~~~~e 231 (312)
T 1suu_A 219 SENGYGKRLNMSK 231 (312)
T ss_dssp ETTSEEEEEEGGG
T ss_pred ECCCceEEEEHHH
Confidence 9999999888753
No 360
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=77.31 E-value=39 Score=29.98 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=123.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
+..++++.+.+|.|+--.+..-........ ......+...+.+..+........|+
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~------------------------g~~~~~~ke~D~l~~~~~~~~~~~ll 57 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGK------------------------GKSAARIKEEDFIDRLLVANTHDHIL 57 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------------------------------CCEEEEEEEETTCEEE
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCC------------------------CceeeeeCCCCEEEEEEEECCCCEEE
Confidence 455788889999998776654321110000 00000111334444444445566777
Q ss_pred EEeCCCCEEEEEcC---------CCeeeE---EeecCCCceeEEEE----cCCCEEEEEeCCCcEEEEeCcccCCCc-ce
Q 012007 252 SGSWDKTLKVWRIS---------DCKCLE---SINAHDDAINSVVA----GFDSLVFTGSADGTVKVWRRELQGKGT-KH 314 (473)
Q Consensus 252 s~s~dg~v~vwd~~---------~~~~~~---~~~~~~~~v~~l~~----~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~ 314 (473)
..+..|.++-.... .|..+. .+. ....|..+.. ..+..++..+.+|.++-..+....... ..
T Consensus 58 ~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G 136 (307)
T 1zi0_A 58 CFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAG 136 (307)
T ss_dssp EEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTC
T ss_pred EEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCC
Confidence 77778886666542 233222 122 3345555543 233478999999999999875322211 11
Q ss_pred eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc----ce---eecCcceEEEEEe--cCCEEEEEeC
Q 012007 315 CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG----GV---LRGHKMAVLCLAA--AGNLVFSGSA 385 (473)
Q Consensus 315 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~---~~~~~~~v~~~~~--~~~~l~s~~~ 385 (473)
.....+..+ ..+..+....+...++..+.+|.+..++...-.... .. .......+..+.. ++..|++.+.
T Consensus 137 ~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~ 215 (307)
T 1zi0_A 137 KVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQ 215 (307)
T ss_dssp EESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEET
T ss_pred eEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEc
Confidence 122223333 555555554455567777888888877764311110 00 0112234444432 3567888899
Q ss_pred CCcEEEEecCCC------CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 386 DRNICLWRREES------GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 386 dg~i~iwd~~~~------~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.|.++-.++..- +.......+..-.+.+..+....+.. -++..+.+|.+.-..+.+-
T Consensus 216 ~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~-------------~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 216 NGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD-------------QIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp TSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTC-------------EEEEEESSCCEEEEEGGGS
T ss_pred CCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCc-------------eEEEEcCCCcEEEEecccc
Confidence 999988877421 11111222222234454444433322 3556666777777777654
No 361
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=77.26 E-value=40 Score=30.14 Aligned_cols=160 Identities=9% Similarity=0.056 Sum_probs=87.2
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC---------CCeeeEE---eecCCCceeEE-EEcC---CCEEEEEeCC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS---------DCKCLES---INAHDDAINSV-VAGF---DSLVFTGSAD 297 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~---------~~~~~~~---~~~~~~~v~~l-~~~~---~~~l~s~~~d 297 (473)
..+.+..+........|+..+..|.++-.... .|.++.. +. ....|..+ .... +.+++..+.+
T Consensus 37 e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~ 115 (323)
T 1wp5_A 37 DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRN 115 (323)
T ss_dssp TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETT
T ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCC
Confidence 33445555555556677777778887666542 2332221 22 23345554 3332 3478899999
Q ss_pred CcEEEEeCcccCCCc--ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc--------eeecCc
Q 012007 298 GTVKVWRRELQGKGT--KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG--------VLRGHK 367 (473)
Q Consensus 298 g~i~vwd~~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~~~ 367 (473)
|.++-..+....... .......+.. ...+..+........|+..+.+|.+..+....-..... .+. ..
T Consensus 116 G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~ 193 (323)
T 1wp5_A 116 GMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EG 193 (323)
T ss_dssp SEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TT
T ss_pred CeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CC
Confidence 999999875432211 1111122222 25555555555556677788889888887643111100 111 12
Q ss_pred ceEEEEE--ecCC-EEEEEeCCCcEEEEecCC
Q 012007 368 MAVLCLA--AAGN-LVFSGSADRNICLWRREE 396 (473)
Q Consensus 368 ~~v~~~~--~~~~-~l~s~~~dg~i~iwd~~~ 396 (473)
..+..+. .++. .|++.+..|..+..++..
T Consensus 194 d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 194 DYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 3343332 2344 788888888888877653
No 362
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=71.63 E-value=70 Score=30.30 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=22.5
Q ss_pred cEEEEEEeCCCC-EEEEEeCCCeEEEEeCC
Q 012007 163 LVKAIIISGDSN-KIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 163 ~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~ 191 (473)
.-..|+|.|+|. .|+.+...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 457899999996 45566789999999754
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.54 E-value=14 Score=39.85 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=32.2
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556667788999999999999999999999988754
No 364
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=69.61 E-value=19 Score=35.00 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=47.3
Q ss_pred ccEEEEEEccCCCEEEEeC-CCCcEEEEecCCccc--------cc-----ceeecCcceEEEEEecCCEEEEEeCCCcEE
Q 012007 325 NAVTALAVNQESAVVYCGS-SDGLVNFWECEKHLS--------HG-----GVLRGHKMAVLCLAAAGNLVFSGSADRNIC 390 (473)
Q Consensus 325 ~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--------~~-----~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~ 390 (473)
.....+.++|||+++++++ .+.++.++|+++... .. ....+-.-.-+.|..+|+...+---|..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 3446788999999887755 578999999874211 00 111222223355666675566667899999
Q ss_pred EEecCC
Q 012007 391 LWRREE 396 (473)
Q Consensus 391 iwd~~~ 396 (473)
-|++..
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999874
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=68.55 E-value=59 Score=28.24 Aligned_cols=160 Identities=10% Similarity=0.073 Sum_probs=89.5
Q ss_pred ccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCC------eeeEEeecCCCceeEEEE-cCCCEEEEEeCCCcEEEEeC
Q 012007 234 HYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDC------KCLESINAHDDAINSVVA-GFDSLVFTGSADGTVKVWRR 305 (473)
Q Consensus 234 ~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~------~~~~~~~~~~~~v~~l~~-~~~~~l~s~~~dg~i~vwd~ 305 (473)
....|..+.... +..+++..+.+|.++-..+... .....++.. +.+..+.. ..+..++..+..|.+..+..
T Consensus 66 ~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkeg-D~l~~~~~~~~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 66 REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEG-DEVVSIASSVDETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTT-CCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCC-CEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence 344555553321 4678999999999999987553 222334433 34444443 34447888899999888865
Q ss_pred cc---cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc------ceeecCcceEEEE-Ee
Q 012007 306 EL---QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG------GVLRGHKMAVLCL-AA 375 (473)
Q Consensus 306 ~~---~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------~~~~~~~~~v~~~-~~ 375 (473)
.. .+..........+. ....|..+...+++..++..+..|.++...+....... ..+ .....+..+ ..
T Consensus 145 ~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~ 222 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPI 222 (276)
T ss_dssp GGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEE
T ss_pred hhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEe
Confidence 42 11111111112222 23566666655666788888999999988764321110 011 112223322 22
Q ss_pred c-CCEEEEEeCCCcEEE--EecCC
Q 012007 376 A-GNLVFSGSADRNICL--WRREE 396 (473)
Q Consensus 376 ~-~~~l~s~~~dg~i~i--wd~~~ 396 (473)
+ ...++..+.+|.+.. ++...
T Consensus 223 ~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 223 KEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCCEEEEEcCCCeEEEeeeCHHH
Confidence 2 346666777787777 77654
No 366
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=67.82 E-value=72 Score=30.21 Aligned_cols=109 Identities=16% Similarity=0.108 Sum_probs=59.1
Q ss_pred CceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcc-eeeeeeec-----cCCccEEEEEEccC---CCEEEEe-CC-
Q 012007 278 DAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTK-HCLAQVLL-----KHENAVTALAVNQE---SAVVYCG-SS- 344 (473)
Q Consensus 278 ~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~-----~~~~~v~~l~~~~~---~~~l~~~-~~- 344 (473)
..-+.|++.|++ .++++...|.|++++......... ..+...+. ..+.....|+|+|+ ..+|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 456788999998 477888899999997532110000 00001111 12467889999996 2333332 21
Q ss_pred -C----------CcEEEEecCCc----------ccccce---eecCcceEEEEEecCCEEEEEeCC
Q 012007 345 -D----------GLVNFWECEKH----------LSHGGV---LRGHKMAVLCLAAAGNLVFSGSAD 386 (473)
Q Consensus 345 -d----------g~i~iwd~~~~----------~~~~~~---~~~~~~~v~~~~~~~~~l~s~~~d 386 (473)
+ ..|.-|.+... +.+... ...|...-+.|.+||.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 13444544321 111111 124777778888899877766543
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=64.41 E-value=79 Score=28.24 Aligned_cols=194 Identities=13% Similarity=0.080 Sum_probs=103.6
Q ss_pred CCEEEEeeCCCcEEEe---eCCcc-----------ccccccCcccEEEEEEeC---CCCEEEEEeCCCeEEEEeCCCCCe
Q 012007 133 GDLLYTGSDSKNIRVW---KNLKE-----------FSGFKSNSGLVKAIIISG---DSNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 133 g~~l~tg~~dg~i~vw---d~~~~-----------~~~~~~h~~~V~~l~~s~---~~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
.+.|+.-+..|.++-. ++... +..+. ....|.++..-+ +..+++.++.+|.|+--.+..-..
T Consensus 53 ~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~ 131 (327)
T 3uc1_A 53 HDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDS 131 (327)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCC
T ss_pred CCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhc
Confidence 5566666666766544 33211 11122 234565554433 467999999999999887654321
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC--CC------
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS--DC------ 267 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~--~~------ 267 (473)
.... ......+...+.+..+........|+..+..|.+..+... .-
T Consensus 132 ~~r~--------------------------G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~ 185 (327)
T 3uc1_A 132 NRSG--------------------------GIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA 185 (327)
T ss_dssp CCSS--------------------------CEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT
T ss_pred cccC--------------------------ceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC
Confidence 1100 0001111133445555555556678888888998888776 21
Q ss_pred ---eeeEEeecCCCceeEEEEc-CCCEEEEEeCCCcEEEEeCcccCC---CcceeeeeeeccCCccEEEEEEccCCCEEE
Q 012007 268 ---KCLESINAHDDAINSVVAG-FDSLVFTGSADGTVKVWRRELQGK---GTKHCLAQVLLKHENAVTALAVNQESAVVY 340 (473)
Q Consensus 268 ---~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 340 (473)
.....+. ..+.|.++... ++..++..+..|.++.-.+..-.. .........+......+..+....+...++
T Consensus 186 a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~ 264 (327)
T 3uc1_A 186 TSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELY 264 (327)
T ss_dssp SBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEE
T ss_pred CCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEE
Confidence 1222232 23456665544 445899999999999887653221 111111122222133344444433444555
Q ss_pred EeCCCCcEEEEecC
Q 012007 341 CGSSDGLVNFWECE 354 (473)
Q Consensus 341 ~~~~dg~i~iwd~~ 354 (473)
..+.+|.+.-++..
T Consensus 265 l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 265 AVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEGGGCEEEEEGG
T ss_pred EEcCCCeEEEEehh
Confidence 66667777666654
No 368
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=61.38 E-value=90 Score=27.87 Aligned_cols=207 Identities=12% Similarity=0.069 Sum_probs=108.3
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc---C------CCeeeEE---eecCCCceeEEE-Ec---CCCEEEEEeCC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI---S------DCKCLES---INAHDDAINSVV-AG---FDSLVFTGSAD 297 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~---~------~~~~~~~---~~~~~~~v~~l~-~~---~~~~l~s~~~d 297 (473)
..+.+..+........|+.-+..|.++-... . .|..+.. +. ....|..+. .. ++..++..+.+
T Consensus 40 e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~ 118 (327)
T 3uc1_A 40 QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRN 118 (327)
T ss_dssp GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETT
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCC
Confidence 3445555555555566666666777665543 2 2333221 22 234555554 33 24589999999
Q ss_pred CcEEEEeCcccCCCcc-eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC--Cccccc----ce---eecCc
Q 012007 298 GTVKVWRRELQGKGTK-HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE--KHLSHG----GV---LRGHK 367 (473)
Q Consensus 298 g~i~vwd~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~----~~---~~~~~ 367 (473)
|.++-..+........ ......+.. ...+..+........|+..+..|.+..+... .-.... .. .....
T Consensus 119 G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~ 197 (327)
T 3uc1_A 119 GLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNID 197 (327)
T ss_dssp SEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTT
T ss_pred CEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCC
Confidence 9999998764322111 111222333 3445555554555677778888988877665 211110 00 01122
Q ss_pred ceEEEEEe--cCCEEEEEeCCCcEEEEecCCCC------ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEE
Q 012007 368 MAVLCLAA--AGNLVFSGSADRNICLWRREESG------AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439 (473)
Q Consensus 368 ~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~ 439 (473)
..+.++.. .+.+|+..+..|.++.-.+..-. .......+..-.+.+..+....+.. -++
T Consensus 198 d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~-------------~i~ 264 (327)
T 3uc1_A 198 DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDS-------------ELY 264 (327)
T ss_dssp CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTC-------------EEE
T ss_pred CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCc-------------cEE
Confidence 33444432 35689999999999888764310 1111112222123344444333332 355
Q ss_pred EeeCCCcEEEEEcCCC
Q 012007 440 SGSLDKSVKVWRVSEH 455 (473)
Q Consensus 440 s~s~Dg~v~iW~i~~~ 455 (473)
..+.+|.+.-+.+.+-
T Consensus 265 l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 265 AVTSGGGVIRTAARQV 280 (327)
T ss_dssp EEEGGGCEEEEEGGGS
T ss_pred EEcCCCeEEEEehhhc
Confidence 5666777777776543
No 369
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=61.35 E-value=1e+02 Score=28.42 Aligned_cols=243 Identities=14% Similarity=0.127 Sum_probs=121.1
Q ss_pred cEEEEEecCCEEEEeeCC-CcEEEeeCCc--cc-----------cccc-cCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 125 HIYSLAASGDLLYTGSDS-KNIRVWKNLK--EF-----------SGFK-SNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~d-g~i~vwd~~~--~~-----------~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.|..++..+...+.-..| +.|..|-... .+ ..+. .....|..|+... ...+.-..||.|..|-
T Consensus 69 ~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~--~h~~alt~~G~v~~wG 146 (406)
T 4d9s_A 69 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD--SHCLAVTMEGEVQSWG 146 (406)
T ss_dssp CEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTSCEEEEE
T ss_pred CEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEECh--hheEEEcCCCcEEEeC
Confidence 566777766555544555 4888883210 00 0011 1223577776643 3566667899999997
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee--ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR--HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
.......-... ... .... ..+. ....|..++.. ....+.-..||.|+.|-....
T Consensus 147 ~n~~GqLG~g~-----~~~-----------~~~p------~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~ 202 (406)
T 4d9s_A 147 RNQNGQLGLGD-----TED-----------SLVP------QKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRY 202 (406)
T ss_dssp CCTTSTTCSSS-----CCC-----------EEEE------EECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTT
T ss_pred CCCCccCCCCC-----CCC-----------cccc------eEecccCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCC
Confidence 54432110000 000 0000 0000 11245555443 345555677889999964321
Q ss_pred ----------ee-eEEee-cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCC------cceeeeeeeccCCccEEE
Q 012007 268 ----------KC-LESIN-AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG------TKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 268 ----------~~-~~~~~-~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~v~~ 329 (473)
.. ...+. .....|..++.... ..+....+|.|..|-....... ....+..........|..
T Consensus 203 GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~-ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~ 281 (406)
T 4d9s_A 203 GNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR-HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQ 281 (406)
T ss_dssp STTCSSSSCCEEEEEECCCSTTCCEEEEEECSS-EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CCCCCCCCCCcCccEEecccCCceEEEEEECCC-cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEE
Confidence 11 11111 12235666665433 4445578999999975432211 111111111112334666
Q ss_pred EEEccCCCEEEEeCCCCcEEEEecCCcccc-----------cceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 330 LAVNQESAVVYCGSSDGLVNFWECEKHLSH-----------GGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 330 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
|+... ...++-..||.|..|-....-++ ..........+..++.-..+.++-..||.|+.|=...
T Consensus 282 i~~G~--~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 282 ISGGW--RHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp EEECS--SEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred EEecC--CEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCC
Confidence 65543 34444567889999965431111 0111112235677777777777778899999997654
No 370
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.00 E-value=1.8e+02 Score=31.25 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=18.4
Q ss_pred EEEEeeCCCcEEEEEcCCCC
Q 012007 437 TVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 437 ~l~s~s~Dg~v~iW~i~~~~ 456 (473)
++++-+.|+++|||++.++.
T Consensus 251 ~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 251 VLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp EEEEEBTTCEEEEEETTTTE
T ss_pred EEEEEeCCCEEEEEECCCCC
Confidence 89999999999999998874
No 371
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=57.62 E-value=1e+02 Score=27.26 Aligned_cols=201 Identities=11% Similarity=0.128 Sum_probs=108.3
Q ss_pred ecCCEEEEeeCCCcEEEeeCCc---------ccc--ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 131 ASGDLLYTGSDSKNIRVWKNLK---------EFS--GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 131 ~~g~~l~tg~~dg~i~vwd~~~---------~~~--~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
++..++++.+.+|.|+--.... ... .++.. ..+..+........++..+..|.++-.....-......
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 4567888999999998774321 111 12222 33444444445557777788888766655321110000
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC---CCCEEEEEeCCCCEEEEEcCC-------Cee
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA---EQGLLYSGSWDKTLKVWRISD-------CKC 269 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~s~s~dg~v~vwd~~~-------~~~ 269 (473)
..+ .+. ...+.+...+.|..+...+ +..+|+..+..|.++...+.. |..
T Consensus 85 ~~G-~~i--------------------~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~ 143 (312)
T 1suu_A 85 SKG-QNI--------------------SELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVI 143 (312)
T ss_dssp ----CBG--------------------GGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEE
T ss_pred CCC-cCh--------------------hhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEE
Confidence 000 000 0000011233444443322 467788899999999988743 333
Q ss_pred eEEeecCCCceeEEEE-cCCCEEEEEeCCCcEEEEeCcc---cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC
Q 012007 270 LESINAHDDAINSVVA-GFDSLVFTGSADGTVKVWRREL---QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~-~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 345 (473)
...+.. .+.+..+.. .++..++..+.+|.+..+.... .+..........+. ....|..+..-.++..|++.+..
T Consensus 144 ~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~ 221 (312)
T 1suu_A 144 VIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSEN 221 (312)
T ss_dssp CBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETT
T ss_pred EEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECC
Confidence 333443 344544444 4455888899999999887653 11111122222222 24556666665556677888889
Q ss_pred CcEEEEecCC
Q 012007 346 GLVNFWECEK 355 (473)
Q Consensus 346 g~i~iwd~~~ 355 (473)
|..+..++..
T Consensus 222 G~~kr~~~~e 231 (312)
T 1suu_A 222 GYGKRLNMSK 231 (312)
T ss_dssp SEEEEEEGGG
T ss_pred CceEEEEHHH
Confidence 9999888753
No 372
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=57.46 E-value=1.2e+02 Score=28.03 Aligned_cols=200 Identities=12% Similarity=0.070 Sum_probs=105.3
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEc--C-CCee---------eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEe
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRI--S-DCKC---------LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWR 304 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~--~-~~~~---------~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd 304 (473)
.|..|+.. ....+.-..||.|+.|-. . .+++ ..........|..|+.... ..++-..+|.|..|-
T Consensus 128 ~i~~va~G--~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~-hs~alt~~G~v~~wG 204 (423)
T 3mvd_K 128 KALCISAG--DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGAD-HLVILTTAGKVFTVG 204 (423)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSS-EEEEEETTSCEEEEE
T ss_pred CEEEEEcC--cCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCC-eEEEEecCCeEEEee
Confidence 45555443 344555577888888874 2 2221 1111112345666665433 455567899999996
Q ss_pred CcccCCC-----------------cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc------
Q 012007 305 RELQGKG-----------------TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG------ 361 (473)
Q Consensus 305 ~~~~~~~-----------------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------ 361 (473)
....+.. ....+..........|..++.... ..++.-..+|.|..|-.....++..
T Consensus 205 ~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~ 283 (423)
T 3mvd_K 205 CAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKE 283 (423)
T ss_dssp CCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCS
T ss_pred CCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCc
Confidence 5422110 001111112222345666665432 2333336889999996543211110
Q ss_pred ----eeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCC---------ceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 362 ----VLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESG---------AHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 362 ----~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
........|..++.-..+.++-..||.|+.|=....+ .......+..-...|..|+.....
T Consensus 284 ~~~~p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~h------ 357 (423)
T 3mvd_K 284 FALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVC------ 357 (423)
T ss_dssp EEEEEEEECCCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTE------
T ss_pred eeeeeEEcCCCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCe------
Confidence 0000123566777777777788889999999654210 011222223323367777766543
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.+.-..||.|+.|-....
T Consensus 358 ---------s~alt~~G~v~~wG~n~~ 375 (423)
T 3mvd_K 358 ---------SYAVTIDGKLYSWGSGVN 375 (423)
T ss_dssp ---------EEEEETTSCEEEEECCTT
T ss_pred ---------EEEEcCCCCEEEECCCCC
Confidence 333468999999987653
No 373
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=54.98 E-value=19 Score=36.10 Aligned_cols=38 Identities=16% Similarity=0.393 Sum_probs=31.6
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA 275 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 275 (473)
..|.++.+ +..++++-+.|+++|+|++++++++.....
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45776665 367999999999999999999999887654
No 374
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=49.01 E-value=1.5e+02 Score=26.82 Aligned_cols=100 Identities=15% Similarity=0.019 Sum_probs=50.7
Q ss_pred CCEEEEEeCCCCEEEEEcCC-CeeeEEe--ecCCCceeEEEEcC--CCEEEEEeCCC----cEEEEeCcccCCCcceeee
Q 012007 247 QGLLYSGSWDKTLKVWRISD-CKCLESI--NAHDDAINSVVAGF--DSLVFTGSADG----TVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 247 ~~~l~s~s~dg~v~vwd~~~-~~~~~~~--~~~~~~v~~l~~~~--~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~ 317 (473)
...|++|+..| +.+++... ++.-..+ ......|.+|++.| .+.+++++..| .|... ...+. .....
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~--tW~~~ 96 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGG--NWTEA 96 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTS--CCEEC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCC--CceEC
Confidence 34778888777 55555432 2222211 12345789999987 55666666555 34332 22221 11111
Q ss_pred ee---ecc--------CCccEEEEEEccC--CCEEEEeCCCCcEEEE
Q 012007 318 QV---LLK--------HENAVTALAVNQE--SAVVYCGSSDGLVNFW 351 (473)
Q Consensus 318 ~~---~~~--------~~~~v~~l~~~~~--~~~l~~~~~dg~i~iw 351 (473)
.. +.. ....|.+|++.|. ...|+++...+.|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 11 111 1235788999872 4556666555655554
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=46.35 E-value=32 Score=34.54 Aligned_cols=37 Identities=5% Similarity=0.168 Sum_probs=30.5
Q ss_pred ceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec
Q 012007 368 MAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 368 ~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 407 (473)
..|.++.++..++++-+.|.++|+|++.+ .+++....
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t---~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTS---FTLIQDYD 258 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTT---TEEEEEEE
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCC---CceEEeec
Confidence 46778888899999999999999999999 45555543
No 376
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=45.20 E-value=1.6e+02 Score=25.89 Aligned_cols=149 Identities=14% Similarity=0.096 Sum_probs=82.8
Q ss_pred CCCEEEEEeCCCCEEEEEcCC-------CeeeEEeecCCCceeEE-EEcCCCEEEEEeCCCcEEEEeCccc---CCCcce
Q 012007 246 EQGLLYSGSWDKTLKVWRISD-------CKCLESINAHDDAINSV-VAGFDSLVFTGSADGTVKVWRRELQ---GKGTKH 314 (473)
Q Consensus 246 ~~~~l~s~s~dg~v~vwd~~~-------~~~~~~~~~~~~~v~~l-~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~ 314 (473)
++.+++..+.+|.++-..+.. +.....+..+ +.+..+ ....+..++..+.+|.+..+....- +.....
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G 186 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 186 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC
Confidence 456889999999999998752 2222234444 444444 3444557888889999888876421 111111
Q ss_pred eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc--------cceeecCcceEEEEEe--cCCEEEEEe
Q 012007 315 CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH--------GGVLRGHKMAVLCLAA--AGNLVFSGS 384 (473)
Q Consensus 315 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~v~~~~~--~~~~l~s~~ 384 (473)
.....+ .....|.++....++..|++.+..|.++-.++...... ...+......+..+.. +...++..+
T Consensus 187 v~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t 265 (307)
T 1zi0_A 187 VRGIRL-GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMIT 265 (307)
T ss_dssp EECCCC-CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEE
T ss_pred eEeEEe-CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEc
Confidence 111122 23455666665555667888889999988877431110 0011111123333222 345566666
Q ss_pred CCCcEEEEecCC
Q 012007 385 ADRNICLWRREE 396 (473)
Q Consensus 385 ~dg~i~iwd~~~ 396 (473)
.+|.+.-+....
T Consensus 266 ~~g~~ir~~~~~ 277 (307)
T 1zi0_A 266 DAGTLVRTRVSE 277 (307)
T ss_dssp SSCCEEEEEGGG
T ss_pred CCCcEEEEeccc
Confidence 677776666654
No 377
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=43.61 E-value=1.5e+02 Score=25.21 Aligned_cols=152 Identities=11% Similarity=-0.042 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
+...+++.+.+|.|+--............ ...+.+..+........|+
T Consensus 1 ~E~v~v~lT~~G~iKr~~~~~~~~~~~~l--------------------------------ke~D~l~~~~~~~t~~~ll 48 (256)
T 1zvt_A 1 SEPVTIVLSQMGWVRSAKGHDIDAPGLNY--------------------------------KAGDSFKAAVKGKSNQPVV 48 (256)
T ss_dssp CCEEEEEEETTSEEEEEESSCCCSTTSCC--------------------------------CTTCCEEEEEEEETTSCEE
T ss_pred CCCEEEEEeCCCEEEEeeCCcCCceeccC--------------------------------CCCCEEEEEEEeCCCCEEE
Q ss_pred EEeCCCCEEEEEc-------CCCe---eeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec
Q 012007 252 SGSWDKTLKVWRI-------SDCK---CLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 252 s~s~dg~v~vwd~-------~~~~---~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
..+..|.++-... ..|. ....+......+..+...++..++.++..|.++...+..-......-......
T Consensus 49 ~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L 128 (256)
T 1zvt_A 49 FVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL 128 (256)
T ss_dssp EEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCC
T ss_pred EEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEE
Q ss_pred cCCccEEEEEEc-cCCCEEEEeCCCCcEEEEecCC
Q 012007 322 KHENAVTALAVN-QESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 322 ~~~~~v~~l~~~-~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
.....+..+... .++..|+..+.+|.+..+....
T Consensus 129 ~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 129 PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp CTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHH
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=39.28 E-value=2.1e+02 Score=25.44 Aligned_cols=241 Identities=10% Similarity=0.058 Sum_probs=121.4
Q ss_pred cCCEEEEeeCCCcEEEeeCC------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 132 SGDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
+..++++.+.+|.|+--... .....++.. ..+..+........|+..+..|.+.-.....-........+ .+
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G-~~ 81 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG-QH 81 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC-EE
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC-cC
Confidence 45678888889988876421 111223333 33444444444557777778887655544221100000000 00
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEE-EEcC--CCCEEEEEeCCCCEEEEEcCC--------CeeeEEee
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL-SLNA--EQGLLYSGSWDKTLKVWRISD--------CKCLESIN 274 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-~~~~--~~~~l~s~s~dg~v~vwd~~~--------~~~~~~~~ 274 (473)
. ...+.+...+.|..+ .... ++.+++.++.+|.++-..+.. +.....+.
T Consensus 82 i--------------------~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~ 141 (323)
T 1wp5_A 82 I--------------------ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK 141 (323)
T ss_dssp G--------------------GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC
T ss_pred h--------------------hhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeC
Confidence 0 000011123344443 3332 356899999999999998742 22222333
Q ss_pred cCCCceeEEE-EcCCCEEEEEeCCCcEEEEeCcc---cCCCcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEE
Q 012007 275 AHDDAINSVV-AGFDSLVFTGSADGTVKVWRREL---QGKGTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVN 349 (473)
Q Consensus 275 ~~~~~v~~l~-~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~ 349 (473)
.. +.+..+. ...+..++..+.+|.+..+.... .+..........+ .....|.++...+++. .|++.+..|..+
T Consensus 142 e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~ll~vt~~G~gK 219 (323)
T 1wp5_A 142 ND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNL-KEGDYIVSGQLITSKDESIVVATQRGAVK 219 (323)
T ss_dssp TT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCC-CTTCCEEEEEEECCTTCEEEEEETTSEEE
T ss_pred CC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEe-CCCCEEEEEEEEcCCCcEEEEEECCCceE
Confidence 33 4444443 34455788889999988887642 1111111111222 2344566665544444 677888888888
Q ss_pred EEecCCcc---------cccceeecCcceEE-EEEe-cCCEEEEEeCCCcEEEEecCC
Q 012007 350 FWECEKHL---------SHGGVLRGHKMAVL-CLAA-AGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 350 iwd~~~~~---------~~~~~~~~~~~~v~-~~~~-~~~~l~s~~~dg~i~iwd~~~ 396 (473)
..++.... .....+......+. ++.. ++..++..+.+|.+..+.+..
T Consensus 220 r~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 220 KMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred EEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 87764311 11111211121233 2222 355666777777776666654
No 379
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=36.98 E-value=1.3e+02 Score=29.48 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=16.3
Q ss_pred ccCCeeEEEEcCCCCEEEEE
Q 012007 234 HYDAVSCLSLNAEQGLLYSG 253 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~ 253 (473)
...+++.++|+||++.|++.
T Consensus 529 ~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 529 IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp TTCEEEEEEECTTSSEEEEE
T ss_pred CCccCcCeeECCCCCEEEEE
Confidence 45689999999999877765
No 380
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=36.06 E-value=2.5e+02 Score=25.59 Aligned_cols=156 Identities=7% Similarity=0.158 Sum_probs=81.7
Q ss_pred CCeeEEEEc---CC----CCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCc
Q 012007 236 DAVSCLSLN---AE----QGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 236 ~~v~~l~~~---~~----~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~ 306 (473)
..+..+.+. +. +.+++.+. ..+.|.|+|+.+++.-+.+. .. +.|+. ..++ -+|.-.-|
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~--~~------~~pd~~~~~~--i~G~~~~~--- 218 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH--PT------FKAERPTKFD--YGGKEYEF--- 218 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC--GG------GSCCSCEEEE--ETTEEEEE---
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc--CC------CccccCcceE--ECCEEeEe---
Confidence 345666666 22 44555555 46779999999998877652 21 23331 1111 12222112
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccC----CCEEEEeCCCCcEEEEecC-----Cccc-ccceeecCc---ce--EE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQE----SAVVYCGSSDGLVNFWECE-----KHLS-HGGVLRGHK---MA--VL 371 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~l~~~~~dg~i~iwd~~-----~~~~-~~~~~~~~~---~~--v~ 371 (473)
...|..|+++|+ ++.|+-....+ -++|.+. .... ......+.. .. ..
T Consensus 219 -----------------~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 219 -----------------KAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL 280 (381)
T ss_dssp -----------------CCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred -----------------ccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence 246888999997 67777665544 2333322 1111 001111111 12 23
Q ss_pred EEE-ecCCEEEEEeCCCcEEEEecCC-C---CceeEEEEecCCCCceeEEEEecCCC
Q 012007 372 CLA-AAGNLVFSGSADRNICLWRREE-S---GAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 372 ~~~-~~~~~l~s~~~dg~i~iwd~~~-~---~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.+. .+|.++++--..+.|..|+..+ . +....+..-. .-..+.++.+..++.
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~ 336 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGG 336 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSC
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCe
Confidence 343 3477777777888999999875 2 1123333222 333567777776654
No 381
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=35.74 E-value=3.5e+02 Score=27.14 Aligned_cols=197 Identities=6% Similarity=-0.015 Sum_probs=94.5
Q ss_pred EEE-EcCCCCEEEEE-eCC----CCEEEEEcCCCeeeEE-ee-cCCC------ceeEEEEcCCCEEEEEeC---------
Q 012007 240 CLS-LNAEQGLLYSG-SWD----KTLKVWRISDCKCLES-IN-AHDD------AINSVVAGFDSLVFTGSA--------- 296 (473)
Q Consensus 240 ~l~-~~~~~~~l~s~-s~d----g~v~vwd~~~~~~~~~-~~-~~~~------~v~~l~~~~~~~l~s~~~--------- 296 (473)
.+. ++|++++++.+ +.. ..|+++|+.+++.+.. +. .-+. ....++|..++.++.+..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~ 212 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSS 212 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcC
Confidence 344 78888877665 322 3599999999987642 22 0000 113346764444444321
Q ss_pred --CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCC-----EEEEeC---CCCcEEEEecCCccc-ccceeec
Q 012007 297 --DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA-----VVYCGS---SDGLVNFWECEKHLS-HGGVLRG 365 (473)
Q Consensus 297 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-----~l~~~~---~dg~i~iwd~~~~~~-~~~~~~~ 365 (473)
...|+.|.+-+.. ..-.++...... ..-.....+++++ .+++.+ ....+.+.|...... .......
T Consensus 213 ~~~~~v~~~~~Gt~~--~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (711)
T 4hvt_A 213 LYPNSLYIWKRGESI--EKAKKLFEVPKE-YIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMP 289 (711)
T ss_dssp SSBCEEEEEETTSCG--GGCEEEEECCTT-SCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSC
T ss_pred CCCCEEEEEECCCCh--HHCeEEeccCCC-ceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecC
Confidence 2457777664221 111122211111 2223445566655 233322 224456666552111 1111111
Q ss_pred CcceEEEEEecCCEEEEE----------eCCCcEEEEecCCCC-------ceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 366 HKMAVLCLAAAGNLVFSG----------SADRNICLWRREESG-------AHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 366 ~~~~v~~~~~~~~~l~s~----------~~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
....+ .-...+.+++.. ...+.|.+.++.+.. ..+.+.. ......+..+.|..+.
T Consensus 290 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~------ 361 (711)
T 4hvt_A 290 SDATL-QGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT-PTANEVFNFISTTKDR------ 361 (711)
T ss_dssp TTCEE-EEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC-CCTTEEEEEEEECSSC------
T ss_pred CcceE-eeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC-CCCCCeEEEEEEECCE------
Confidence 12121 223345444422 246778999987631 1222211 2234467788888763
Q ss_pred ccCCCccEEEEEeeCCCc--EEEEEcCCC
Q 012007 429 HQKGDQRWTVYSGSLDKS--VKVWRVSEH 455 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~--v~iW~i~~~ 455 (473)
++++...++. |.++++..+
T Consensus 362 --------l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 362 --------VFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp --------EEEEEEETTEEEEEEECEETT
T ss_pred --------EEEEEEECCEEEEEEEECCCC
Confidence 6777777775 556665444
No 382
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=33.86 E-value=3e+02 Score=25.79 Aligned_cols=155 Identities=12% Similarity=0.065 Sum_probs=80.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE-------------EeecCCCceeEEEEcCCCEEEEEeCCCcEEEE
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE-------------SINAHDDAINSVVAGFDSLVFTGSADGTVKVW 303 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-------------~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vw 303 (473)
.|..|+.. ....+.-..+|.|+.|-....-.+- -.......|..|+.... ..++...+|.|..|
T Consensus 205 ~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~-hs~alt~~G~v~~w 281 (473)
T 3of7_A 205 NIVQLAPG--KDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGEN-HCFALTKDNKLVSW 281 (473)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSS-EEEEEETTSCEEEE
T ss_pred CEEEEEec--CCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCC-eEEEEecCCCEEEe
Confidence 35555543 3455666788999999654311100 00001135666665433 44555679999999
Q ss_pred eCcccCCCc----------ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc------------
Q 012007 304 RRELQGKGT----------KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG------------ 361 (473)
Q Consensus 304 d~~~~~~~~----------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------ 361 (473)
-....+... ...+..........|..|+.... ..++-..||.|..|-....-++..
T Consensus 282 G~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~--hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 359 (473)
T 3of7_A 282 GLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEH--HSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKD 359 (473)
T ss_dssp EECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSS--EEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEEC
T ss_pred CCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCC--eEEEEeCCCeEEEEECCCCCccCCCccccccccccc
Confidence 654322100 01111111112245666665433 334446788899986532111100
Q ss_pred -----------eeecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 362 -----------VLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 362 -----------~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
........+..++.-....++-..||.|+.|=...
T Consensus 360 ~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 360 VHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp TTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred cCCceeeeccCcccCCCCceEEEEeCCCeEEEEeCCCcEEEeeCCC
Confidence 00001115666776677777778899999997654
No 383
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=33.75 E-value=79 Score=30.61 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=41.8
Q ss_pred eeEEEEcCCC---EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE-EEEEccCCCEEEEeCCCCcEEE
Q 012007 280 INSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT-ALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 280 v~~l~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~~dg~i~i 350 (473)
++.|+....+ .++.|+.+|.|.-..+..............+.....+|. .|.++++...|++++.++.++|
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 4455443322 688899999887665432211000111112223346775 8999999999999988765555
No 384
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=31.25 E-value=2.6e+02 Score=27.27 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=16.5
Q ss_pred cCCeeEEEEcCCCCEEEEEe
Q 012007 235 YDAVSCLSLNAEQGLLYSGS 254 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s 254 (473)
...++.++|+||++.|+++-
T Consensus 530 ~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 530 GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp TCEEEEEEECTTSSEEEEEE
T ss_pred CccccCCEECCCCCEEEEEE
Confidence 35689999999999888764
No 385
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=30.25 E-value=1.9e+02 Score=27.62 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=37.5
Q ss_pred EEEEEeCCCcEEEEeCcccCCC--cceeeeee--eccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 290 LVFTGSADGTVKVWRRELQGKG--TKHCLAQV--LLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 290 ~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
.++.|+.+|.|+=.-+...... ........ +.....+|..|.++++..+|++++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 6888999998755443211110 01111111 2234578899999999999999998876665
No 386
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=29.17 E-value=4.5e+02 Score=26.36 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=33.8
Q ss_pred CCCcEEEEeCcccCCC----cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc--EEEEecCCc
Q 012007 296 ADGTVKVWRRELQGKG----TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL--VNFWECEKH 356 (473)
Q Consensus 296 ~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~--i~iwd~~~~ 356 (473)
..+.|...++...... ..... .........+..+.+..+ .++++...++. |.++|+.++
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKI-LFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEE-EECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETT
T ss_pred CCCeEEEEECCcccccccccccceE-EECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCC
Confidence 4677888988643210 11111 112233456788888876 56667766764 667776544
No 387
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=26.10 E-value=2.8e+02 Score=27.07 Aligned_cols=58 Identities=5% Similarity=0.079 Sum_probs=33.5
Q ss_pred ceeEEEEcCCCEEEEEeCCC-------------cEEEEeCcccCCCcceeeeeeec-cCCccEEEEEEccCCCEEEEe
Q 012007 279 AINSVVAGFDSLVFTGSADG-------------TVKVWRRELQGKGTKHCLAQVLL-KHENAVTALAVNQESAVVYCG 342 (473)
Q Consensus 279 ~v~~l~~~~~~~l~s~~~dg-------------~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~ 342 (473)
....|.+.+++.|..+...+ .|..++...+ .+...+. .....++.++|+||++.|++.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG------el~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG------EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC------CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCC------eEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 44567888888555533221 3444443211 1222222 234678999999999988775
No 388
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=24.98 E-value=3.9e+02 Score=24.21 Aligned_cols=201 Identities=14% Similarity=0.141 Sum_probs=103.5
Q ss_pred ecCCEEEEeeCCCcEEEeeCC---------cccc--ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 131 ASGDLLYTGSDSKNIRVWKNL---------KEFS--GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 131 ~~g~~l~tg~~dg~i~vwd~~---------~~~~--~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
++..++++.+.+|.|+--.+. +.+. .++ ....+..+........|+..+..|.+.-.....-......
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 456788999999999874321 1111 122 2345555555555566776777777655443211000000
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC---CCCEEEEEeCCCCEEEEEcCC-------Cee
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA---EQGLLYSGSWDKTLKVWRISD-------CKC 269 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~s~s~dg~v~vwd~~~-------~~~ 269 (473)
..+ .+ ....+.+.....|..+..-. +..+|+.++..|.++...+.. +..
T Consensus 84 a~G-~~--------------------i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ 142 (370)
T 3l6v_A 84 ARG-RP--------------------IINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKI 142 (370)
T ss_dssp SCC-EE--------------------GGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEE
T ss_pred cCC-cC--------------------HhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceE
Confidence 000 00 00000011334444443322 456899999999999998743 222
Q ss_pred eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcc---cCCCcceeeeeeeccCCccEEEEEEcc------------
Q 012007 270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRREL---QGKGTKHCLAQVLLKHENAVTALAVNQ------------ 334 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~v~~l~~~~------------ 334 (473)
...++....-|.......+..++..+.+|.+..+.... .+..........+ .....|.++...+
T Consensus 143 ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~~~~~~~~ 221 (370)
T 3l6v_A 143 AINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRL-AKGEEVVSLIVSERAGGVEDEVEDE 221 (370)
T ss_dssp SSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEEEECCC----------
T ss_pred EEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEe-CCCCEEEEEEEeccccccccccccc
Confidence 23343323333333344445788888899888886542 1111111111112 2234455554443
Q ss_pred -----------------------CCCEEEEeCCCCcEEEEecC
Q 012007 335 -----------------------ESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 335 -----------------------~~~~l~~~~~dg~i~iwd~~ 354 (473)
++..+++.+..|..+...+.
T Consensus 222 ~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~ 264 (370)
T 3l6v_A 222 SAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLA 264 (370)
T ss_dssp -------------------------CEEEEEETTSEEEEEEGG
T ss_pred cccccccccccccccccccccccCCceEEEeeCCCCEEEEEHH
Confidence 44678888999998888764
No 389
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=21.64 E-value=2.5e+02 Score=26.79 Aligned_cols=53 Identities=13% Similarity=0.342 Sum_probs=36.4
Q ss_pred EEEEeeCCCcEEEeeCC-c---------cccccc--cCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 135 LLYTGSDSKNIRVWKNL-K---------EFSGFK--SNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~-~---------~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
.++.|..+|.|.=.-.. . .+..+. ....+|..|.+++++.+|+.++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 68889999976443211 1 111112 23578999999999999999998876665
No 390
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=21.16 E-value=5.1e+02 Score=24.18 Aligned_cols=160 Identities=14% Similarity=0.093 Sum_probs=84.3
Q ss_pred CceeEEEEcCCCEEEEEeCCCcEEEEeCccc---C-----C--CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 278 DAINSVVAGFDSLVFTGSADGTVKVWRRELQ---G-----K--GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 278 ~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~---~-----~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
..|..|+.... ..++...+|.|..|-.... . . .....+..........|..|+... ...++-..+|.
T Consensus 148 ~~i~~va~G~~-hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~--~hs~alt~~G~ 224 (473)
T 3of7_A 148 HKVVQLAATDN-MSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK--DHILFLDEEGM 224 (473)
T ss_dssp CCEEEEEECSS-EEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECS--SEEEEEETTSC
T ss_pred CcEEEEEccCC-EEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecC--CeEEEEeCCCe
Confidence 45666665433 4455578999999975210 0 0 001111111111123477776643 34555567899
Q ss_pred EEEEecCCcccccc------------eeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCc-------------eeE
Q 012007 348 VNFWECEKHLSHGG------------VLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGA-------------HSC 402 (473)
Q Consensus 348 i~iwd~~~~~~~~~------------~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------~~~ 402 (473)
|..|-....-++.. ...-....|..++.-..+.++-..||.|+.|-....+. ..+
T Consensus 225 v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P 304 (473)
T 3of7_A 225 VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKP 304 (473)
T ss_dssp EEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEE
T ss_pred EEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecc
Confidence 99996543211110 00001135777777778888888899999997543110 011
Q ss_pred EEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 403 LAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 403 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
..........|..|+.... ..+.-..||.|..|--...
T Consensus 305 ~~v~~~~~~~i~~ia~G~~---------------hs~~lt~~G~v~~wG~n~~ 342 (473)
T 3of7_A 305 KRLALPDNVVIRSIAAGEH---------------HSLILSQDGDLYSCGRLDM 342 (473)
T ss_dssp EECCCCTTCCEEEEEECSS---------------EEEEEETTSCEEEEEECTT
T ss_pred ccccccCCccEEEEEeCCC---------------eEEEEeCCCeEEEEECCCC
Confidence 1111111235666665444 2334467899999987653
No 391
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=20.25 E-value=3e+02 Score=26.90 Aligned_cols=62 Identities=10% Similarity=0.138 Sum_probs=38.8
Q ss_pred EEEEEeCCCcEEEEeCcccCCCcceeeeeee--ccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 290 LVFTGSADGTVKVWRRELQGKGTKHCLAQVL--LKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 290 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
.++.|+.+|.|+-.-+..............+ .....+|..|.++++...|++++.++.+++-
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 6778999998864433321110111111111 2345678999999999999999888776663
Done!