BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012008
(473 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28EW0|TM87A_XENTR Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2
SV=1
Length = 541
Score = 151 bits (382), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 138/216 (63%), Gaps = 7/216 (3%)
Query: 199 KNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFE 258
K P+G++ PLM FY+ M + Y++L+++WFI YWKD+L++Q I AVI LG+ E
Sbjct: 197 KGPHGFISASDWPLMIFYMVMCIMYILLALLWFIWSACYWKDLLRIQFWIAAVIFLGMLE 256
Query: 259 MILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSK 318
++++EY N +NTG+ + + + +++++L RLL+ VS+GYG+++P LG + +
Sbjct: 257 KAVYYAEYQNTDNTGVSSHGLLIFAELISSIKRTLARLLVTIVSLGYGIIKPRLGAVMHR 316
Query: 319 VLLLGATYFLASELLDITEFVGTISDISGRARLFLV--LPVAFLDAFLILWIFTSLSKTL 376
V+ +G YF+ + + + +G + L L+ +P+A LD+ L WIF SL++T+
Sbjct: 317 VVGMGVLYFVFAAVEGVMRIIG-----AKEYDLVLLAGIPLALLDSGLCWWIFVSLAQTM 371
Query: 377 EQLQAKRSSIKLDIYRKFSNALAVTVIASVIWIAYE 412
+ L+ +++++K +YR F+N L ++AS+I++ +
Sbjct: 372 KTLKLRKNTVKYSLYRHFTNTLIFAILASIIFMIWR 407
>sp|Q8BKU8|TM87B_MOUSE Transmembrane protein 87B OS=Mus musculus GN=Tmem87b PE=2 SV=1
Length = 555
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 133/214 (62%), Gaps = 9/214 (4%)
Query: 201 PNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMI 260
P+GY+ PLM FY+ M + Y++ V+W + YWKDIL++Q I AVI LG+ E
Sbjct: 206 PHGYISASDWPLMIFYMVMCIVYILYGVLWLLWSACYWKDILRIQFWIAAVIFLGMLEKA 265
Query: 261 LWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVL 320
+++SEY N N+TG+ + + + AV+++L RLL++ VS+GYG+V+P LG + +V+
Sbjct: 266 VFYSEYQNINSTGLSTQGLLIFAELISAVKRTLARLLVIIVSLGYGIVKPRLGTVMHRVI 325
Query: 321 LLGATYFLASELLDITEFVGTISDISGRARLFLVLP---VAFLDAFLILWIFTSLSKTLE 377
LG Y + + + + +G G L +VL +A +D+ + +IF SL++T++
Sbjct: 326 GLGLLYLIFAAIEGVMRVIG------GSKHLAVVLTDIVLAVIDSIFVWFIFISLAQTMK 379
Query: 378 QLQAKRSSIKLDIYRKFSNALAVTVIASVIWIAY 411
L+ +++++K +YR F+N L V+AS++++ +
Sbjct: 380 TLRLRKNTVKFSLYRHFTNTLIFAVLASIVFMVW 413
>sp|Q8BXN9|TM87A_MOUSE Transmembrane protein 87A OS=Mus musculus GN=Tmem87a PE=1 SV=1
Length = 555
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 127/216 (58%), Gaps = 4/216 (1%)
Query: 199 KNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFE 258
K P YL PLM F++ M + YV+ V+W YW+D+L++Q I AVI LG+FE
Sbjct: 213 KGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMFE 272
Query: 259 MILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSK 318
++++E+ N G + AV++SL R L++ VS+GYG+V+P LG K
Sbjct: 273 KAVFYAEFQNIRYKGESVQNALVLAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHK 332
Query: 319 VLLLGATYFLASELLDITEFVGTISDISGRARLFLVLPVAFLDAFLILWIFTSLSKTLEQ 378
V++ GA Y L S + + G +D++ A +P+AFLD L WIF SL++T++
Sbjct: 333 VVVAGALYLLFSGMEGVLRVTGAQTDLASLA----FIPLAFLDTALCWWIFISLTQTMKL 388
Query: 379 LQAKRSSIKLDIYRKFSNALAVTVIASVIWIAYECL 414
L+ +R+ +KL +YR F+N L + V AS+++I + +
Sbjct: 389 LKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTM 424
>sp|Q96K49|TM87B_HUMAN Transmembrane protein 87B OS=Homo sapiens GN=TMEM87B PE=1 SV=1
Length = 555
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 131/214 (61%), Gaps = 9/214 (4%)
Query: 201 PNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMI 260
P+GY+ PLM FY+ M + Y++ ++W YWKDIL++Q I AVI LG+ E
Sbjct: 205 PHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYWKDILRIQFWIAAVIFLGMLEKA 264
Query: 261 LWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVL 320
+++SEY N +NTG+ + + + A++++L RLL++ VS+GYG+V+P LG + +V+
Sbjct: 265 VFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVKPRLGTVMHRVI 324
Query: 321 LLGATYFLASELLDITEFVGTISDISGRARLFLVLP---VAFLDAFLILWIFTSLSKTLE 377
LG Y + + + + +G G L +VL +A +D+ + +IF SL++T++
Sbjct: 325 GLGLLYLIFAAVEGVMRVIG------GSNHLAVVLDDIILAVIDSIFVWFIFISLAQTMK 378
Query: 378 QLQAKRSSIKLDIYRKFSNALAVTVIASVIWIAY 411
L+ +++++K +YR F N L V+AS++++ +
Sbjct: 379 TLRLRKNTVKFSLYRHFKNTLIFAVLASIVFMGW 412
>sp|Q8NBN3|TM87A_HUMAN Transmembrane protein 87A OS=Homo sapiens GN=TMEM87A PE=1 SV=3
Length = 555
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 126/216 (58%), Gaps = 4/216 (1%)
Query: 199 KNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFE 258
K P YL PLM F++ M + YV+ V+W YW+D+L++Q I AVI LG+ E
Sbjct: 213 KGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLE 272
Query: 259 MILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSK 318
++++E+ N G + AV++SL R L++ VS+GYG+V+P LG K
Sbjct: 273 KAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHK 332
Query: 319 VLLLGATYFLASELLDITEFVGTISDISGRARLFLVLPVAFLDAFLILWIFTSLSKTLEQ 378
V++ GA Y L S + + G +D++ A +P+AFLD L WIF SL++T++
Sbjct: 333 VVVAGALYLLFSGMEGVLRVTGAQTDLASLA----FIPLAFLDTALCWWIFISLTQTMKL 388
Query: 379 LQAKRSSIKLDIYRKFSNALAVTVIASVIWIAYECL 414
L+ +R+ +KL +YR F+N L + V AS+++I + +
Sbjct: 389 LKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTM 424
>sp|O13989|YEG7_SCHPO Uncharacterized protein C26H5.07c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC26H5.07c PE=3 SV=2
Length = 505
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 141/313 (45%), Gaps = 26/313 (8%)
Query: 92 GLVQVVIFEAADRNNIGGSAYGGQRSICCTPDLAKLEGCKQGE----VIRMPSATDINWP 147
G ++++IF D N IG G++ C + + CK + +I + D +
Sbjct: 65 GAIRLLIFNWKDVNAIGMEDDDGEKHYICNYEDIEAGVCKDDDYGLYLINQTAPHDSIYS 124
Query: 148 IVLNVQFSGNYLSTKMDNVDVPITKTGMYNLFFIACDPKLKGLVMSGKTIWKNPNGYLPG 207
++ + + + + P+ ++G+Y +F + + ++ W+N G L
Sbjct: 125 AAVDAE-------SMVSPLKYPVEQSGLYCVFTAPLEGSSEAYKIT--VTWENYFGNLDA 175
Query: 208 RMAPLMNFYVYMSLAYVVLSVIW--FIQYVRYWKDILQLQHCITAVITLGLFEMIL--WF 263
P + F + LA L IW FI + RY D+LQ+Q I+ V+ L + ++ +
Sbjct: 176 TDYPHL-FLNPILLAINCLIGIWWSFIMF-RYRHDLLQVQKYISGVVALSIVCTMVSTGY 233
Query: 264 SEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVLLLG 323
+AN V ++ + R+S L+L VS+GY +V P+LG L K +L
Sbjct: 234 FYFANSKGYTTGSKVFAFFLSLAQSARQSYFGFLLLIVSLGYSIVVPSLGSLLRKCQILA 293
Query: 324 ATYFLASELLDITEFVGTISDISGRARLFLVL--PVAFLDAF-LILWIFTSLSKTLEQLQ 380
F++S + F+ S + L ++ PV + F + LWI +L+ T+ L+
Sbjct: 294 GLQFVSSCFFLSSLFISP----SNKESLVILFAAPVFLITLFAMFLWIVLALNNTIRDLR 349
Query: 381 AKRSSIKLDIYRK 393
++ ++K +Y +
Sbjct: 350 IRKQTVKAQMYTR 362
>sp|P32857|PTM1_YEAST Membrane protein PTM1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PTM1 PE=1 SV=2
Length = 523
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 152/352 (43%), Gaps = 46/352 (13%)
Query: 88 EHSTGLVQVVIFEAADRNNIGGSAYGGQRSICCTP---DLAKLEGCKQGEVIRMPSATD- 143
E GLV V I++ D ++G + C D+ E + E I D
Sbjct: 69 ESDPGLV-VAIYDFQDFEHLGVQLPDEEMYYICDDYAIDIGICEEENRDEFIVQDVVYDP 127
Query: 144 -------INWPIVLNVQFSGNYLSTKMDNVDVPITKTGMY--NLFFIACDPKLKGLVMSG 194
+ PI+ FS N + + PI +TG Y F + K +V
Sbjct: 128 YTSTNRSLANPIM---TFSQN--EVGLHDTRYPIKETGFYCVTAFRSSTSTKFNAVVN-- 180
Query: 195 KTIWKNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITL 254
++N G L G + Y +++AYVV ++ + ++ ++L LQ + A
Sbjct: 181 ---FRNAYGQLAGTEINKLPLYGLLAVAYVVAMALYSFAFWKHKHELLPLQKYLLAFFVF 237
Query: 255 GLFEMILWFSEYANFNN----TGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRP 310
E I ++ Y N GI+ ++ ++T G V + + L+L +++GYG+V P
Sbjct: 238 LTAETIFVWAYYDLKNEKGDTAGIKVYMVFLSILTAGKV--TFSFFLLLIIALGYGIVYP 295
Query: 311 TLGG-LTSKVLLLGA-TYFLASELLDITEFVGTISDISGRARLFLVLPVAFLDAFLILW- 367
L L + + GA TY + L ++D+ + L L+ + A +I +
Sbjct: 296 KLNKTLMRRCQMYGALTYAICIGFL----IQSYLTDMEAPSPLILITLIPMALALIIFYY 351
Query: 368 -IFTSLSKTLEQLQAKRSSIKLDIYRK--------FSNALAVTVIASVIWIA 410
I S++KT+ L+ +R +KL++Y+K F + LA ++++S I++
Sbjct: 352 MIIRSMTKTVIYLKEQRQIVKLNMYKKLLYIIYASFLSVLAGSIVSSFIYVG 403
>sp|A6ZZS6|PTM1_YEAS7 Membrane protein PTM1 OS=Saccharomyces cerevisiae (strain YJM789)
GN=PTM1 PE=3 SV=1
Length = 523
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 152/352 (43%), Gaps = 46/352 (13%)
Query: 88 EHSTGLVQVVIFEAADRNNIGGSAYGGQRSICCTP---DLAKLEGCKQGEVIRMPSATD- 143
E GLV V I++ D ++G + C D+ E + E I D
Sbjct: 69 ESDPGLV-VAIYDFQDFEHLGVQLPDEEMYYICDDYAIDIGICEEENRDEFIVQDVVYDP 127
Query: 144 -------INWPIVLNVQFSGNYLSTKMDNVDVPITKTGMY--NLFFIACDPKLKGLVMSG 194
+ PI+ FS N + + PI +TG Y F + K +V
Sbjct: 128 YTSTNRSLANPIM---TFSQN--EVGLHDTRYPIKETGFYCVTAFRSSTSTKFNAVVN-- 180
Query: 195 KTIWKNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITL 254
++N G L G + Y +++AYVV ++ + ++ ++L LQ + A
Sbjct: 181 ---FRNAYGQLAGTEINKLPLYGLLAVAYVVAMALYSFAFWKHKHELLPLQKYLLAFFVF 237
Query: 255 GLFEMILWFSEYANFNN----TGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRP 310
E I ++ Y N GI+ ++ ++T G V + + L+L +++GYG+V P
Sbjct: 238 LTAETIFVWAYYDLKNEKGDTAGIKVYMVFLSILTAGKV--TFSFFLLLIIALGYGIVYP 295
Query: 311 TLGG-LTSKVLLLGA-TYFLASELLDITEFVGTISDISGRARLFLVLPVAFLDAFLILW- 367
L L + + GA TY + L ++D+ + L L+ + A +I +
Sbjct: 296 KLNKTLMRRCQMYGALTYAICIGFL----IQSYLTDMEAPSPLILITLIPMALALIIFYY 351
Query: 368 -IFTSLSKTLEQLQAKRSSIKLDIYRK--------FSNALAVTVIASVIWIA 410
I S++KT+ L+ +R +KL++Y+K F + LA ++++S I++
Sbjct: 352 MIIRSMTKTVIYLKEQRQIVKLNMYKKLLYIIYASFLSVLAGSIVSSFIYVG 403
>sp|P38745|YHB7_YEAST Uncharacterized membrane protein YHL071W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YHL017W PE=1
SV=1
Length = 532
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 135/325 (41%), Gaps = 21/325 (6%)
Query: 81 ADEHSEMEHSTGLVQVVIFEAADRNNIGGSAYGGQRSICCTP---DLAKLEGCKQGEVIR 137
ADE + E V V +F+ D +IG G+ C DL E +G+ I
Sbjct: 60 ADEDDDGEG----VSVAVFDFQDYEHIGVRLPNGEIQYICDDYALDLGLCEDSSEGQFII 115
Query: 138 MPSATD--INWPIVLNVQ---FSGNYLSTKMDNVDVPITKTGMYNLFFIACDPKLKGLVM 192
+A D + L Q F+ L T D V I KTG Y +
Sbjct: 116 QETAIDPFTSKEHKLTSQILTFTQQELGTN-DKV-YSINKTGYYCV--TTSSFISSSSKF 171
Query: 193 SGKTIWKNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVI 252
++N G L A M Y ++++AY V ++++ ++ ++L LQ I
Sbjct: 172 KATVNFRNAYGQLDASEAYKMPIYAFLAVAYAVCTLVYSWLCWKHRHELLPLQRYILVFC 231
Query: 253 TLGLFEMILWFSEYANFNNTGIRPVVITTWVVTVG---AVRKSLTRLLILCVSMGYGVVR 309
+ I + Y N G V + ++V + A + + T LL L +S+GYG+V
Sbjct: 232 IFLTADTIFVWMYYIIENQKGNSSVALHVYMVFISIFSAGKMTFTLLLALLISLGYGIVY 291
Query: 310 PTLGGLTSKVLLLGATYFLASELLDITEFVGTISDISGRARLFLVLPVAF-LDAFLILWI 368
P L + + A + A + + + S+ L +P+ L AF L +
Sbjct: 292 PKLDRTLLRRCQIFAIFTFAVCVAFLVQKYSQNSESLSNLILITAIPLVLCLFAFYYLTL 351
Query: 369 FTSLSKTLEQLQAKRSSIKLDIYRK 393
+S++KT+ L+ + +KL++YRK
Sbjct: 352 -SSMNKTMTYLREQNQVVKLNMYRK 375
>sp|Q148L1|GP108_BOVIN Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1
Length = 548
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 17/167 (10%)
Query: 120 CTPDLAK-----LEGCKQGEVIRMPSATDINWPIVLNVQFSGNYLSTKMDNVDVPITKTG 174
PD AK L+G +QG + + +VL + N + V + G
Sbjct: 171 AAPDKAKSKPTGLQGDRQG-------VSGKDQELVLGLGHLNNSYNFSFHVVIGSRAEEG 223
Query: 175 MYNLFFIACDPKLKG----LVMSGKTIWKNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIW 230
YNL F CD + G ++ KNP GYL PL Y+ MS ++ + W
Sbjct: 224 QYNLNFHNCDNSVPGREQPFDITVMIREKNPEGYLSAAEIPLFKLYMVMSACFLGAGIFW 283
Query: 231 FIQYVRYWKDILQLQHCITAVITLGLFEMILWFSEYANFNNTGIRPV 277
+ ++ ++ H + A +T +L+ S F N+ P+
Sbjct: 284 VSILCKNTYNVFKI-HWLMAALTFTKSVSLLFHSINYYFINSQGHPI 329
>sp|Q8BUV8|GP107_MOUSE Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2
Length = 551
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 12/160 (7%)
Query: 172 KTGMYNLFFIACDP------KLKGLVMSGKTIWKNPNGYLPGRMAPLMNFYVYMSLAYVV 225
+ G+Y+L+F C + ++ KNPN YL PL YV M+L + +
Sbjct: 215 QEGLYSLYFHKCSGNNVKPGEQASFSLNIAITEKNPNSYLSAGEIPLPKLYVSMALFFFL 274
Query: 226 LSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMILWFSEYANFNNTGIRPVVITTWVVT 285
IW + D+ ++ + A+ ++ +Y ++ G I W V
Sbjct: 275 SGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQGFP---IEGWAVV 331
Query: 286 ---VGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVLLL 322
++ +L + I + G+ ++ L K+ ++
Sbjct: 332 YYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMI 371
>sp|Q9NPR9|GP108_HUMAN Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=3
Length = 543
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 135 VIRMPSATDINWPIVLNVQFSGNYLSTKMDNVDVPITKTGMYNLFFIACDPKLKG----L 190
VI+ PS D + +VL + N + V + G Y+L F C+ + G
Sbjct: 181 VIQGPSGKDKD--LVLGLSHLNNSYNFSFHVVIGSQAEEGQYSLNFHNCNNSVPGKEHPF 238
Query: 191 VMSGKTIWKNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIW 230
++ KNP+G+L PL Y+ MS ++ + W
Sbjct: 239 DITVMIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFW 278
>sp|Q5VW38|GP107_HUMAN Protein GPR107 OS=Homo sapiens GN=GPR107 PE=1 SV=1
Length = 600
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 17/162 (10%)
Query: 172 KTGMYNLFFIACDPKLKGLVMSGKTIW--------KNPNGYLPGRMAPLMNFYVYMSLAY 223
+ G+Y+L+F C L + S K + KNP+ YL PL Y+ M+ +
Sbjct: 217 QEGLYSLYFHKC---LGKELPSDKFTFSLDIEITEKNPDSYLSAGEIPLPKLYISMAFFF 273
Query: 224 VVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMILWFSEYANFNNTGIRPVVITTWV 283
+ IW + D+ ++ + A+ ++ +Y ++ G I W
Sbjct: 274 FLSGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQGFP---IEGWA 330
Query: 284 VT---VGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVLLL 322
V ++ +L + I + G+ ++ L K+ ++
Sbjct: 331 VVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMI 372
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,198,400
Number of Sequences: 539616
Number of extensions: 6599018
Number of successful extensions: 18617
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 18588
Number of HSP's gapped (non-prelim): 26
length of query: 473
length of database: 191,569,459
effective HSP length: 121
effective length of query: 352
effective length of database: 126,275,923
effective search space: 44449124896
effective search space used: 44449124896
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)