Query 012008
Match_columns 473
No_of_seqs 244 out of 378
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 19:47:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rdd_B UPF0092 membrane protei 15.0 1.6E+02 0.0056 19.6 3.5 23 353-375 5-27 (37)
2 3rko_A NADH-quinone oxidoreduc 12.6 6.9E+02 0.024 21.8 8.9 60 242-313 64-124 (147)
3 3hd7_B Syntaxin-1A; membrane p 12.1 5.9E+02 0.02 20.8 7.0 29 371-399 64-92 (109)
4 1aly_A CD40 ligand; cytokine, 10.4 2.2E+02 0.0075 24.5 3.8 35 168-202 46-84 (146)
5 4eiy_A Adenosine receptor A2A/ 7.9 1.3E+03 0.044 21.8 18.9 27 353-380 211-237 (447)
6 2lxr_A NADH dehydrogenase I su 7.2 1.8E+02 0.0062 22.9 1.6 22 89-110 25-46 (76)
7 2j4t_A Angiogenin-4; angiogene 7.0 98 0.0033 27.1 0.0 22 293-314 4-25 (144)
8 4a17_O RPL19, 60S ribosomal pr 7.0 3.7E+02 0.013 24.7 3.8 35 366-401 94-130 (185)
9 2vov_A MOPE, surface-associate 6.9 2.3E+02 0.0078 26.5 2.4 19 165-183 281-299 (336)
10 1pi7_A VPU protein, U ORF prot 6.8 3.9E+02 0.013 18.1 2.9 24 217-240 9-32 (36)
No 1
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=15.01 E-value=1.6e+02 Score=19.63 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=15.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 012008 353 LVLPVAFLDAFLILWIFTSLSKT 375 (473)
Q Consensus 353 ~~ipla~~~avf~~WI~~sL~~T 375 (473)
.++|+++..++||+.++++=.+-
T Consensus 5 ~~l~~v~~~~ifYFl~iRPQ~Kr 27 (37)
T 2rdd_B 5 LILMLVVFGLIFYFMILRPQQKR 27 (37)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Confidence 34566666778888887774443
No 2
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=12.61 E-value=6.9e+02 Score=21.80 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhhhhccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhccceeeeccC
Q 012008 242 LQLQHCITAVITLGL-FEMILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLG 313 (473)
Q Consensus 242 l~Iq~~I~avi~l~~-le~~~~~~~y~~~n~tG~~~~g~~v~~~i~~a~K~tlsf~LlLlVsmGyGvVkp~Lg 313 (473)
.++|+|+.|++++.. +|.++-+---...+.. ++. ..-..+.|+++|++|+=|---|=.|.
T Consensus 64 FsirFfLiAilFlIFDvEi~~L~Pwa~~~~~~-----~~~-------~~~~~~~Fl~iL~~Gl~yEW~~GaL~ 124 (147)
T 3rko_A 64 LSAKFYLVAMFFVIFDVEALYLFAWSTSIRES-----GWV-------GFVEAAIFIFVLLAGLVYLVRIGALD 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTT-----HHH-------HHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHH-------HHHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 689999988887777 7887643211111111 111 11224567777777776644343443
No 3
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=12.12 E-value=5.9e+02 Score=20.76 Aligned_cols=29 Identities=3% Similarity=-0.012 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 012008 371 SLSKTLEQLQAKRSSIKLDIYRKFSNALA 399 (473)
Q Consensus 371 sL~~T~~~Lk~~rq~~KL~lYR~f~~~li 399 (473)
...+..++|+.+++..|-.--++++..++
T Consensus 64 ~v~~g~~eL~kA~~yqk~~rkk~~i~l~~ 92 (109)
T 3hd7_B 64 YVERAVSDTKKAVKYQSKARRKKIMIIIC 92 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcceehHHH
Confidence 44555556666666666555455444433
No 4
>1aly_A CD40 ligand; cytokine, TNF, hyper-IGM syndrome; 2.00A {Homo sapiens} SCOP: b.22.1.1 PDB: 1i9r_A 3qd6_A* 3lkj_A*
Probab=10.44 E-value=2.2e+02 Score=24.54 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=21.1
Q ss_pred eeeCCCCcEEEEEEeeCCCC----CceEEEEEEEEECCC
Q 012008 168 VPITKTGMYNLFFIACDPKL----KGLVMSGKTIWKNPN 202 (473)
Q Consensus 168 y~I~ktG~Y~l~~~~C~~~~----~~~~~~g~v~~~N~~ 202 (473)
..|+++|.|.||-..+.... .+..+...+.-+|++
T Consensus 46 L~V~~~GlY~VYsQV~f~~~~~~~~~~~~~~~v~~~~~~ 84 (146)
T 1aly_A 46 LTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPG 84 (146)
T ss_dssp EEESSCEEEEEEEEEEEEECTTTSCSSEEEEEEEECCTT
T ss_pred EEECCCeEEEEEEEEEEecCCCCCCCCCEEEEEEEeCCC
Confidence 78999999999976653211 223455455444543
No 5
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=7.93 E-value=1.3e+03 Score=21.79 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=17.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012008 353 LVLPVAFLDAFLILWIFTSLSKTLEQLQ 380 (473)
Q Consensus 353 ~~ipla~~~avf~~WI~~sL~~T~~~Lk 380 (473)
.++|+.+ ..++|.-|+..+++..++.+
T Consensus 211 ~~lP~~i-i~~~y~~I~~~l~~~~~~~~ 237 (447)
T 4eiy_A 211 VLVPLLL-MLGVYLRIFLAARRQLADLE 237 (447)
T ss_dssp CHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhhhh
Confidence 4567764 45567788888877665543
No 6
>2lxr_A NADH dehydrogenase I subunit E; HP1264, oxidoreductase; NMR {Helicobacter pylori}
Probab=7.23 E-value=1.8e+02 Score=22.89 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=18.4
Q ss_pred CCcceEEEEEEeeccccccccc
Q 012008 89 HSTGLVQVVIFEAADRNNIGGS 110 (473)
Q Consensus 89 ~~~g~v~~vIfe~~D~~~iG~~ 110 (473)
...|.|.+..||..|++.+-.+
T Consensus 25 ~~~gEV~IFlFEigDFs~VqkS 46 (76)
T 2lxr_A 25 MQPNEVAIFMFEVGDFSNIPKS 46 (76)
T ss_dssp SCTTCEEEEEECSSCCSHHHHH
T ss_pred cCCCcEEEEEEEecCchHHHHH
Confidence 4568899999999999999544
No 7
>2j4t_A Angiogenin-4; angiogenesis, endonuclease, differentiation, cancer, nuclease, hydrolase, ribonuclease, developmental protein; 2.02A {Mus musculus}
Probab=6.99 E-value=98 Score=27.10 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccceeeeccCC
Q 012008 293 LTRLLILCVSMGYGVVRPTLGG 314 (473)
Q Consensus 293 lsf~LlLlVsmGyGvVkp~Lg~ 314 (473)
..+.|+|++.+|.|.+.|+|++
T Consensus 4 ~~~~llll~ll~l~~~~~s~~~ 25 (144)
T 2j4t_A 4 SPCPLLLVFVLGLVVIPPTLAQ 25 (144)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHhcccccccc
Confidence 4566778888899999999975
No 8
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}
Probab=6.98 E-value=3.7e+02 Score=24.67 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=27.9
Q ss_pred HHH--HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 012008 366 LWI--FTSLSKTLEQLQAKRSSIKLDIYRKFSNALAVT 401 (473)
Q Consensus 366 ~WI--~~sL~~T~~~Lk~~rq~~KL~lYR~f~~~li~~ 401 (473)
.|+ ++.|++.++.+++.+.+-+ .+||.||...=+-
T Consensus 94 ~WmrRiR~LRrlLr~~Re~~kID~-h~Yr~LY~kaKGn 130 (185)
T 4a17_O 94 LWMRRQRVLRRLLRKYRAAKKIDK-HQYHEFYLGSKGN 130 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHhcCC
Confidence 465 7889999999999887766 6799999876554
No 9
>2vov_A MOPE, surface-associated protein; metal-binding protein, oxidized tryptophan, methanotroph bacterium, kunurenine, copper binding; HET: KYN; 1.35A {Methylococcus capsulatus} PDB: 2vox_A* 2vow_A
Probab=6.86 E-value=2.3e+02 Score=26.49 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=16.4
Q ss_pred CeeeeeCCCCcEEEEEEee
Q 012008 165 NVDVPITKTGMYNLFFIAC 183 (473)
Q Consensus 165 ~~~y~I~ktG~Y~l~~~~C 183 (473)
.++.+.+|||+|.+|.+|.
T Consensus 281 tksitlpktgyymlyvanv 299 (336)
T 2vov_A 281 TKSITLPKTGYYMLYVANV 299 (336)
T ss_dssp EEEEECSSSEEEEEEEEEC
T ss_pred eeeeeccCcceEEEEEeee
Confidence 3478899999999999986
No 10
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=6.85 E-value=3.9e+02 Score=18.06 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 012008 217 VYMSLAYVVLSVIWFIQYVRYWKD 240 (473)
Q Consensus 217 ~~msi~Y~vl~~~W~~~~~k~r~d 240 (473)
..+.++..+.-+.|.+.+..+||.
T Consensus 9 valivalIiaIVVWtiv~ieYrk~ 32 (36)
T 1pi7_A 9 VALVVAIIIAIVVWSIVIIEGRGG 32 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888999998887753
Done!