Query 012008
Match_columns 473
No_of_seqs 244 out of 378
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 19:48:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012008.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012008hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1alya_ b.22.1.1 (A:) Extracel 24.4 48 0.0035 26.7 5.3 37 167-203 45-85 (146)
2 d2cupa2 g.39.1.3 (A:35-65) Fou 24.1 13 0.00098 22.7 1.1 20 31-50 5-24 (31)
3 d1kxga_ b.22.1.1 (A:) Soluble 12.7 1.1E+02 0.0078 24.5 4.7 36 164-201 40-75 (144)
4 d1blja_ d.93.1.1 (A:) P55 Blk 11.8 1.4E+02 0.01 22.3 5.0 18 128-145 31-48 (114)
5 d1dg6a_ b.22.1.1 (A:) Apoptosi 10.6 1.5E+02 0.011 23.9 5.0 19 165-183 52-70 (162)
6 d2tnfa_ b.22.1.1 (A:) Tumor ne 10.5 97 0.007 24.7 3.7 19 165-183 37-55 (148)
7 d1hxra_ b.88.1.1 (A:) RabGEF M 9.9 57 0.0041 25.8 1.8 31 97-134 62-93 (115)
8 d1lkka_ d.93.1.1 (A:) p56-lck 8.5 1.5E+02 0.011 21.7 3.9 17 129-145 24-40 (105)
9 d1xu1a_ b.22.1.1 (A:) A prolif 8.5 86 0.0063 24.8 2.5 20 165-184 39-58 (137)
10 d1m56c_ f.25.1.1 (C:) Bacteria 8.2 5.7E+02 0.042 21.7 12.3 57 213-269 132-188 (265)
No 1
>d1alya_ b.22.1.1 (A:) Extracellular domain of CD40 ligand {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.38 E-value=48 Score=26.69 Aligned_cols=37 Identities=11% Similarity=0.225 Sum_probs=25.4
Q ss_pred eeeeCCCCcEEEEEEeeC----CCCCceEEEEEEEEECCCC
Q 012008 167 DVPITKTGMYNLFFIACD----PKLKGLVMSGKTIWKNPNG 203 (473)
Q Consensus 167 ~y~I~ktG~Y~l~~~~C~----~~~~~~~~~g~v~~~N~~G 203 (473)
...|+++|.|.||...+- +......+...+..+++.+
T Consensus 45 ~L~V~~~G~Y~VYsQv~f~~~~~~~~~~~~~~~v~~~~~~~ 85 (146)
T d1alya_ 45 QLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGR 85 (146)
T ss_dssp EEEESSCEEEEEEEEEEEEECTTTSCSSEEEEEEEECCTTS
T ss_pred EEEeCCCeEEEEEEEEEEeccCCCCCceeEEEEEEEEcCCC
Confidence 589999999999976542 2223446777777777654
No 2
>d2cupa2 g.39.1.3 (A:35-65) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.09 E-value=13 Score=22.65 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=17.6
Q ss_pred eeecccCCCccccCCeeeec
Q 012008 31 SIHTYDNNPFRDVGNSALLP 50 (473)
Q Consensus 31 ~~h~y~~~~f~~~~na~~~~ 50 (473)
-.|+.++|+|.+++|-+.|.
T Consensus 5 C~hpLA~E~F~aKd~kI~C~ 24 (31)
T d2cupa2 5 CLHPLANETFVAKDNKILCN 24 (31)
T ss_dssp SCCCTTSSCCEEETTEEECH
T ss_pred hccccccCcccccCCeEeec
Confidence 46999999999999998876
No 3
>d1kxga_ b.22.1.1 (A:) Soluble part of TALL-1, sTALL-1 (BAFF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.73 E-value=1.1e+02 Score=24.46 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=23.0
Q ss_pred CCeeeeeCCCCcEEEEEEeeCCCCCceEEEEEEEEECC
Q 012008 164 DNVDVPITKTGMYNLFFIACDPKLKGLVMSGKTIWKNP 201 (473)
Q Consensus 164 ~~~~y~I~ktG~Y~l~~~~C~~~~~~~~~~g~v~~~N~ 201 (473)
.+....|+++|+|.+|-..+..+. .. -.+...+++.
T Consensus 40 ~~g~L~V~~~GlYfVYsQV~F~~~-~~-~lsh~v~~~~ 75 (144)
T d1kxga_ 40 KENKILVKETGYFFIYGQVLYTDK-TY-AMGHLIQRKK 75 (144)
T ss_dssp ETTEEEECSCEEEEEEEEEEECCC-SS-EEEEEEEEEC
T ss_pred ECCEEEEccceEEEEEEEEEEeCC-Cc-ccceEEEEEe
Confidence 345789999999999987765331 22 2334455544
No 4
>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.80 E-value=1.4e+02 Score=22.32 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=14.0
Q ss_pred CCCCCCCEEecCCCCCCC
Q 012008 128 EGCKQGEVIRMPSATDIN 145 (473)
Q Consensus 128 g~C~~g~fIi~~~~~~~~ 145 (473)
..++.|.|++|++.+++.
T Consensus 31 ~~~~~G~FLVR~S~~~~g 48 (114)
T d1blja_ 31 PMNKAGSFLIRESESNKG 48 (114)
T ss_dssp TTCCTTCEEBCBCTTCSS
T ss_pred cCCCCceEEEeccCCCCC
Confidence 456789999998876654
No 5
>d1dg6a_ b.22.1.1 (A:) Apoptosis-2 ligand, apo2l/TRAIL {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.62 E-value=1.5e+02 Score=23.86 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=15.1
Q ss_pred CeeeeeCCCCcEEEEEEee
Q 012008 165 NVDVPITKTGMYNLFFIAC 183 (473)
Q Consensus 165 ~~~y~I~ktG~Y~l~~~~C 183 (473)
+.+..|+++|+|.||...+
T Consensus 52 ~G~L~V~~~G~YfVYsQV~ 70 (162)
T d1dg6a_ 52 NGELVIHEKGFYYIYSQTY 70 (162)
T ss_dssp TTEEEESSCEEEEEEEEEE
T ss_pred CCEEEeCCCeEEEEEEEEE
Confidence 4468999999999996554
No 6
>d2tnfa_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.51 E-value=97 Score=24.72 Aligned_cols=19 Identities=11% Similarity=0.329 Sum_probs=15.7
Q ss_pred CeeeeeCCCCcEEEEEEee
Q 012008 165 NVDVPITKTGMYNLFFIAC 183 (473)
Q Consensus 165 ~~~y~I~ktG~Y~l~~~~C 183 (473)
+....|+++|+|.||-..|
T Consensus 37 ~g~L~V~~~G~YyVYsQv~ 55 (148)
T d2tnfa_ 37 DNQLVVPADGLYLVYSQVL 55 (148)
T ss_dssp TTEEECSSSEEEEEEEEEE
T ss_pred CCEEEECCCeEEEEEEEEE
Confidence 3468999999999997665
No 7
>d1hxra_ b.88.1.1 (A:) RabGEF Mss4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.87 E-value=57 Score=25.81 Aligned_cols=31 Identities=19% Similarity=0.433 Sum_probs=21.5
Q ss_pred EEEeecccccccccc-CCCceeeeeChhhhccCCCCCCC
Q 012008 97 VIFEAADRNNIGGSA-YGGQRSICCTPDLAKLEGCKQGE 134 (473)
Q Consensus 97 vIfe~~D~~~iG~~~-~~g~~~ycC~~~~~~~g~C~~g~ 134 (473)
.+=+.=||+|||.+. -++.|..+|-+ |+.|=
T Consensus 62 ~V~Dm~~FeNVGfSk~v~~~KyLiCAD-------CE~GP 93 (115)
T d1hxra_ 62 LVNDMFIFENVGFTKDVGNVKFLVCAD-------CEIGP 93 (115)
T ss_dssp EESCGGGCSSCEECCCBTTEEEEECTT-------TCCBC
T ss_pred EecccceeeceeeccccCCeEEEEEec-------cccCC
Confidence 344555899999964 44778888864 77654
No 8
>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.52 E-value=1.5e+02 Score=21.72 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=12.3
Q ss_pred CCCCCCEEecCCCCCCC
Q 012008 129 GCKQGEVIRMPSATDIN 145 (473)
Q Consensus 129 ~C~~g~fIi~~~~~~~~ 145 (473)
.+++|.|++|++.+++.
T Consensus 24 ~~~~GtFLVR~S~~~~g 40 (105)
T d1lkka_ 24 GNTHGSFLIRESESTAG 40 (105)
T ss_dssp TCCTTCEEEEECSSSTT
T ss_pred CCCCCcEEEEccCCCCC
Confidence 35579999998766553
No 9
>d1xu1a_ b.22.1.1 (A:) A proliferation-inducing ligand, APRIL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.49 E-value=86 Score=24.75 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=16.8
Q ss_pred CeeeeeCCCCcEEEEEEeeC
Q 012008 165 NVDVPITKTGMYNLFFIACD 184 (473)
Q Consensus 165 ~~~y~I~ktG~Y~l~~~~C~ 184 (473)
..+..|+++|+|.||...+-
T Consensus 39 ~g~L~V~~~G~YyVYsQV~f 58 (137)
T d1xu1a_ 39 GDIVRVWDTGIYLLYSQVLF 58 (137)
T ss_dssp TTEEEECSCEEEEEEEEEEE
T ss_pred CCEEEEccceEEEEEEEEEE
Confidence 45789999999999987764
No 10
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.15 E-value=5.7e+02 Score=21.70 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012008 213 MNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMILWFSEYANF 269 (473)
Q Consensus 213 l~fY~~msi~Y~vl~~~W~~~~~k~r~dll~Iq~~I~avi~l~~le~~~~~~~y~~~ 269 (473)
+|+--...++-....+.|.....+++++-.....++...++++.+=...++.||.+.
T Consensus 132 l~l~nT~iLl~Ss~~~~~a~~~~~~~~~~~~~~~~L~~t~~lg~~F~~~q~~Ey~~~ 188 (265)
T d1m56c_ 132 LPLINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSHA 188 (265)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHccHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444445555555566667766655444444444445555566655555677777653
Done!