Query 012009
Match_columns 473
No_of_seqs 164 out of 1377
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:39:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0065 LeuC 3-isopropylmalate 100.0 8E-131 2E-135 998.0 37.3 379 68-473 2-386 (423)
2 TIGR02083 LEU2 3-isopropylmala 100.0 1E-125 3E-130 982.2 39.7 379 69-473 1-383 (419)
3 TIGR01343 hacA_fam homoaconita 100.0 2E-123 5E-128 965.4 39.2 376 70-473 1-378 (412)
4 TIGR02086 IPMI_arch 3-isopropy 100.0 7E-123 1E-127 961.9 38.2 375 69-473 1-377 (412)
5 PRK00402 3-isopropylmalate deh 100.0 1E-122 3E-127 961.4 39.7 379 67-473 1-381 (418)
6 PRK12466 isopropylmalate isome 100.0 1E-120 3E-125 959.9 39.4 379 67-473 2-432 (471)
7 TIGR00170 leuC 3-isopropylmala 100.0 3E-120 6E-125 955.8 38.6 379 67-473 1-430 (465)
8 PRK05478 isopropylmalate isome 100.0 3E-119 6E-124 949.2 38.1 379 67-473 1-430 (466)
9 cd01583 IPMI 3-isopropylmalate 100.0 5E-117 1E-121 911.8 35.9 350 97-473 1-352 (382)
10 TIGR00139 h_aconitase homoacon 100.0 8E-114 2E-118 938.6 39.0 378 68-473 1-422 (712)
11 cd01585 AcnA_Bact Aconitase ca 100.0 2E-113 5E-118 883.0 35.3 347 96-473 1-350 (380)
12 TIGR01342 acon_putative aconit 100.0 8E-113 2E-117 930.6 38.7 373 70-473 1-376 (658)
13 PF00330 Aconitase: Aconitase 100.0 4E-114 8E-119 912.0 26.7 380 70-473 1-437 (465)
14 cd01581 AcnB Aconitate hydrata 100.0 2E-112 4E-117 887.6 35.9 365 71-473 1-407 (436)
15 PRK07229 aconitate hydratase; 100.0 5E-112 1E-116 925.4 38.4 376 67-473 1-379 (646)
16 TIGR01340 aconitase_mito aconi 100.0 1E-111 3E-116 928.6 39.2 380 67-473 18-441 (745)
17 cd01584 AcnA_Mitochondrial Aco 100.0 1E-109 3E-114 862.5 33.7 349 97-473 1-381 (412)
18 PRK11413 putative hydratase; P 100.0 8E-109 2E-113 903.5 35.9 374 64-473 30-443 (751)
19 cd01582 Homoaconitase Homoacon 100.0 1E-105 2E-110 820.3 33.3 321 98-473 2-333 (363)
20 PRK09238 bifunctional aconitat 100.0 1E-104 3E-109 871.8 37.3 385 51-473 353-780 (835)
21 TIGR00117 acnB aconitate hydra 100.0 1E-103 2E-108 862.0 36.7 385 51-473 354-780 (844)
22 PLN00094 aconitate hydratase 2 100.0 1E-101 3E-106 844.8 35.6 385 51-473 426-854 (938)
23 cd01351 Aconitase Aconitase ca 100.0 5E-101 1E-105 797.6 32.8 348 97-473 1-359 (389)
24 PRK09277 aconitate hydratase; 100.0 2.3E-99 5E-104 835.2 35.8 378 85-473 74-529 (888)
25 PRK12881 acnA aconitate hydrat 100.0 1.2E-98 2E-103 831.0 34.0 377 86-473 74-530 (889)
26 TIGR01341 aconitase_1 aconitat 100.0 1.2E-98 3E-103 828.6 32.1 378 82-473 53-519 (876)
27 PTZ00092 aconitate hydratase-l 100.0 4E-98 9E-103 826.0 34.1 382 81-473 76-543 (898)
28 TIGR02333 2met_isocit_dHY 2-me 100.0 3.7E-98 8E-103 822.2 32.4 387 67-473 49-505 (858)
29 PLN00070 aconitate hydratase 100.0 6.5E-98 1E-102 825.6 33.3 377 86-473 113-578 (936)
30 cd01586 AcnA_IRP Aconitase A c 100.0 4E-98 9E-103 770.2 28.3 336 97-473 1-374 (404)
31 COG1048 AcnA Aconitase A [Ener 100.0 1.1E-88 2.3E-93 740.1 24.6 388 67-469 31-500 (861)
32 KOG0453 Aconitase/homoaconitas 100.0 2E-85 4.4E-90 688.1 29.5 389 57-473 46-471 (778)
33 KOG0452 RNA-binding translatio 100.0 1.9E-68 4E-73 556.6 18.3 371 70-456 61-515 (892)
34 COG1049 AcnB Aconitase B [Ener 100.0 5E-55 1.1E-59 458.6 18.3 386 51-472 355-781 (852)
35 KOG0454 3-isopropylmalate dehy 100.0 3.6E-54 7.7E-59 439.3 8.0 467 1-472 1-468 (502)
36 KOG0454 3-isopropylmalate dehy 99.7 3.6E-18 7.7E-23 176.0 5.9 136 324-473 21-190 (502)
37 COG1679 Predicted aconitase [G 96.3 0.081 1.8E-06 55.6 13.5 293 92-452 46-358 (403)
38 PF04412 DUF521: Protein of un 95.0 0.064 1.4E-06 57.2 7.4 90 336-447 265-356 (400)
39 cd01355 AcnX Putative Aconitas 83.8 2.3 5E-05 45.4 6.2 296 89-453 33-348 (389)
40 KOG0585 Ca2+/calmodulin-depend 37.2 31 0.00067 38.2 3.3 14 250-263 345-358 (576)
41 PRK15447 putative protease; Pr 31.8 82 0.0018 32.3 5.3 78 364-441 23-110 (301)
42 cd01355 AcnX Putative Aconitas 30.5 83 0.0018 33.9 5.1 79 368-452 32-116 (389)
43 COG0129 IlvD Dihydroxyacid deh 29.2 95 0.0021 35.1 5.5 33 247-281 55-87 (575)
44 COG0853 PanD Aspartate 1-decar 26.6 28 0.0006 31.6 0.7 33 373-409 20-61 (126)
45 cd06919 Asp_decarbox Aspartate 25.7 24 0.00052 31.5 0.1 33 373-409 20-61 (111)
46 PF01986 DUF123: Domain of unk 23.2 2E+02 0.0044 25.1 5.3 22 430-452 70-91 (99)
47 PRK05449 aspartate alpha-decar 22.6 30 0.00065 31.5 0.1 34 373-410 21-63 (126)
48 PF11823 DUF3343: Protein of u 22.1 92 0.002 24.9 2.9 16 383-398 11-26 (73)
49 TIGR00223 panD L-aspartate-alp 21.0 34 0.00073 31.2 0.1 34 373-410 21-63 (126)
No 1
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-131 Score=997.97 Aligned_cols=379 Identities=40% Similarity=0.653 Sum_probs=366.7
Q ss_pred CCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHH
Q 012009 68 AMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNV 147 (473)
Q Consensus 68 ~~Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~~~~~~~ 147 (473)
+|||+||||++|+++..+.+||.+.+++|++|+||.|+|++++.|++ .|+ +||+|+|+++++||++|+.+.+.++++
T Consensus 2 ~~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~lr~-~g~--kV~~p~k~~~~~DH~vPt~~~~~a~~~ 78 (423)
T COG0065 2 AKTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGLRE-AGR--KVRDPEKTVATFDHNVPTPDIKAAEQQ 78 (423)
T ss_pred CccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHHHH-hCC--cccCccceEEEecCCCCCccHHHHHHH
Confidence 59999999999999988999999999999999999999999999975 774 999999999999999999999999999
Q ss_pred HHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHc
Q 012009 148 DILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLG 227 (473)
Q Consensus 148 ~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~ 227 (473)
+.+|+||+++||.+|||+++ +|||||+++|+|+++||++|||+||||||+|||||||+|+|+||++++|+
T Consensus 79 ~~lr~~~ke~Gi~~~~~~g~----------~GI~H~v~pE~G~~~PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vla 148 (423)
T COG0065 79 KELRENAKEFGIVNFYDVGD----------QGIVHQVGPEQGLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVLA 148 (423)
T ss_pred HHHHHHHHHhCCeeeecCCC----------CcEEEEEeccccccCCCcEEEecccCcccchhhhhhhccccHHHHHHHHH
Confidence 99999999999999998863 79999999999999999999999999999999999999999999999999
Q ss_pred cceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeecc
Q 012009 228 TGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVP 307 (473)
Q Consensus 228 tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~ 307 (473)
||++|+++||+|+|+++|+|++||+||||||+||++||.+|++|+++||+|+.+++||||+|||||||++|+|||+|||+
T Consensus 149 tg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme~RmTicNMaIE~GAkaGii~ 228 (423)
T COG0065 149 TGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGIIA 228 (423)
T ss_pred hCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChhhhhhhhhhhhhhcccceeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhhcCC--CCCcccccCCCCeecEEEEEECCCcceeeecCCCCCcccccccccc--ceeceEEEecCCCCCh
Q 012009 308 ADGTTFKYLEDKTS--LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD--VKIDRVYIGSCTGGKT 383 (473)
Q Consensus 308 ~D~~t~~YL~~r~~--~~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~--~~Id~a~IGSCTngr~ 383 (473)
||++|++||+.+.. +.|+.+++|+||.|+++++||+|+|||+||||++|+|+.+++|+.+ ++|||||||||||||+
T Consensus 229 pDe~T~~Y~k~~~~a~~~~~~l~sD~dA~y~~~v~~d~s~leP~Va~p~~p~nv~~v~e~~~~~i~iDqVFIGSCTNgRi 308 (423)
T COG0065 229 PDETTFEYLKEWDGAVAYWKTLKSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPVSEVEPDPIKIDQVFIGSCTNGRI 308 (423)
T ss_pred CcHhHHHHHHHHhccccccceecCCCCCceeEEEEEEcccCCceeeCCCCcccceecccccCCceeeceEEEeccCCccH
Confidence 99999999998665 7799999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCccc--ceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccC
Q 012009 384 EDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARM 461 (473)
Q Consensus 384 eDl~~AA~iL~~~G~kv~--V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l 461 (473)
|||++||+||| |+|++ ||++|+|+|++||+||+++ |++++|.+|||+|. .||||||+|+| +|+|
T Consensus 309 eDLr~AA~Ilk--grkva~~Vr~iVvP~S~~V~~qA~~e--------Gl~~if~~AG~~~~-~pgCg~CLg~~---~gvL 374 (423)
T COG0065 309 EDLRAAAEILK--GRKVAPGVRAIVVPGSRRVKEQAEKE--------GLDKIFIEAGFEWR-EPGCGPCLGMH---PGVL 374 (423)
T ss_pred HHHHHHHHHhc--cCccCCCceEEEecCcHHHHHHHHHc--------cHHHHHHhcCcEEc-CCCCccccccC---CCcC
Confidence 99999999999 99996 9999999999999999986 58999999999995 89999999995 5679
Q ss_pred CCCCEEEeecCC
Q 012009 462 NEPMASLCLHDK 473 (473)
Q Consensus 462 ~~ge~~iSTsn~ 473 (473)
++||+|+||||.
T Consensus 375 ~~gE~c~STSNR 386 (423)
T COG0065 375 GPGERCASTSNR 386 (423)
T ss_pred CCCCEEeeccCC
Confidence 999999999994
No 2
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=1.2e-125 Score=982.24 Aligned_cols=379 Identities=38% Similarity=0.720 Sum_probs=366.7
Q ss_pred CcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHH
Q 012009 69 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 148 (473)
Q Consensus 69 ~Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~~~~~~~~ 148 (473)
|||+||||++|++++.|+|||++++++|++|+||.|+|++++.|++ +|. .+||||+++++++||++|+.+.+.+++++
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~~-~g~-~~V~dp~~v~~~~DH~vpa~~~~~a~~~~ 78 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFKE-YGG-KKVFDPDRVALVPDHFTPNKDIKSAEQCK 78 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHHH-cCC-CcCCCCCCEEEEeCCCCCCCCHHHHHHHH
Confidence 7999999999999988999999999999999999999999999975 673 79999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHcc
Q 012009 149 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 228 (473)
Q Consensus 149 ~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~t 228 (473)
.+|+|+|+|||++|||.+ .+|||||+++|+|+++||+++||+||||||+||||+||||||+||++.+|+|
T Consensus 79 ~~r~fa~~~gi~~f~d~g----------~~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~lat 148 (419)
T TIGR02083 79 MMREFAREQGIEKFFEIG----------NMGIEHALLPEEGIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMAT 148 (419)
T ss_pred HHHHHHHHcCCcceecCC----------CcceeeeeccccCccCCCeEEEecCCCccccCccceeEEccChHHHHHHHhc
Confidence 999999999999889864 2599999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeeccC
Q 012009 229 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 308 (473)
Q Consensus 229 g~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~ 308 (473)
|++||+|||||+|+|+|+|++||++|||||+|+++|+++|++|++|||+|+++++||+++|||||||++|+||++|||||
T Consensus 149 g~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~~R~Tl~NMa~E~GA~~~i~~~ 228 (419)
T TIGR02083 149 GKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFPV 228 (419)
T ss_pred CCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccccCceeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhcCCCCCcccccCCCCeecEEEEEECCCcceeeecCCCCCccccccccc--cceeceEEEecCCCCChHHH
Q 012009 309 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK--DVKIDRVYIGSCTGGKTEDF 386 (473)
Q Consensus 309 D~~t~~YL~~r~~~~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~--~~~Id~a~IGSCTngr~eDl 386 (473)
|++|++||+.|++++|+.+.+|+||.|+++++||||+|||+||+|++|||+.+++|+. +++|||||||||||||+|||
T Consensus 229 D~~t~~yL~~r~~~~~~~~~~D~dA~Y~~~~~iDls~leP~va~P~~pdnv~~v~e~~~~g~~id~v~IGSCTngr~eDl 308 (419)
T TIGR02083 229 DEITIEYEKGRGKREEKIYKADEDAKYVRVIEIDLSELEPQVAFPHLPENTKDISEAGKEEIKIDQVVIGSCTNGRLEDL 308 (419)
T ss_pred ChHHHHHHhhCCccchhcccCCCCCCEEEEEEEEccccceeecCCCCcccCcChhhcccccCccCeEEEEcCCCCChHHH
Confidence 9999999999998899999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHhcCCccc--ceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCC
Q 012009 387 LAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEP 464 (473)
Q Consensus 387 ~~AA~iL~~~G~kv~--V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~g 464 (473)
++||+||| |+|++ ||++|+|+|++||.+|+++ |++++|.+|||.| .+||||+|+|++ +|++++|
T Consensus 309 ~~AA~iLk--G~kv~~~vr~~v~P~S~~v~~~a~~~--------G~~~~l~~aGa~i-~~pgCg~C~G~~---~g~l~~g 374 (419)
T TIGR02083 309 RLAAEILK--GKTVAPDVRCIIIPGSQNVYLEAMKE--------GLLEIFIEAGAVV-STPTCGPCLGGH---MGILAEG 374 (419)
T ss_pred HHHHHHHc--CCCCCCCccEEEeCCCHHHHHHHHHC--------CcHHHHHHcCCEE-cCCccccccCcC---CCcCCCC
Confidence 99999999 88997 9999999999999999986 4899999999999 699999999994 6779999
Q ss_pred CEEEeecCC
Q 012009 465 MASLCLHDK 473 (473)
Q Consensus 465 e~~iSTsn~ 473 (473)
|+||||+|.
T Consensus 375 e~~vsT~NR 383 (419)
T TIGR02083 375 ERAISTTNR 383 (419)
T ss_pred CEEEEecCC
Confidence 999999994
No 3
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=2.2e-123 Score=965.43 Aligned_cols=376 Identities=40% Similarity=0.723 Sum_probs=364.0
Q ss_pred cHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHHH
Q 012009 70 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDI 149 (473)
Q Consensus 70 Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~~~~~~~~~ 149 (473)
||+||||++|+++ .+++||++++++|++|+||.|+|++++.|++ +|. .+||||+++++++||++|+.+.+.+++++.
T Consensus 1 Tl~eKIl~~h~~~-~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~~-~g~-~~v~~P~~v~~~~DH~~p~~~~~~a~~~~~ 77 (412)
T TIGR01343 1 TIAEKILSKHSGK-EVYAGDLIVAEIDQAMVHDITAPLAIRRLEE-YGI-DKVFDPERIVIVVDHVVPASTIKAAEMQKL 77 (412)
T ss_pred CHHHHHHHHhcCC-ccCCCCEEEEECCEEEEecccHHHHHHHHHH-cCC-CcCCCCCcEEEEcCCCCCCCChhHHHHHHH
Confidence 8999999999998 5899999999999999999999999999975 774 799999999999999999999999999999
Q ss_pred HHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHccc
Q 012009 150 LRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTG 229 (473)
Q Consensus 150 lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~tg 229 (473)
+|+||++|||++||+. ++|||||+++|+|+++||++++|+||||||+||||+||||||+||++.+|+||
T Consensus 78 ~r~fa~~~gi~~~~~~-----------g~GI~H~v~~E~g~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~~atg 146 (412)
T TIGR01343 78 AREFVKKTGIKHFFDV-----------GEGICHQVLPEEGLVKPGDLVVGADSHTCTYGALGAFATGMGSTDIAYAIATG 146 (412)
T ss_pred HHHHHHHcCCceeecC-----------CCCEEEEEchhhCcCCCCcEEEecCCCcCCcCchhheeecccHHHHHHHHhcC
Confidence 9999999999988864 58999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeeccCC
Q 012009 230 KVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 309 (473)
Q Consensus 230 ~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~D 309 (473)
++||+|||+|+|+|+|+|++||++|||||+||++|+.+|++||+|||+|+++++||+++|||||||++|+||++||||+|
T Consensus 147 ~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~ti~NMa~E~GA~~~i~~~D 226 (412)
T TIGR01343 147 KTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEERMTLANMAIEAGGKTGIIEPD 226 (412)
T ss_pred cEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHHhhhhccccccCceeeEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCCCcccccCCCCeecEEEEEECCCcceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHHH
Q 012009 310 GTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAA 389 (473)
Q Consensus 310 ~~t~~YL~~r~~~~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~A 389 (473)
++|++||+.|++++|+.+.+|+||.|+++++||||+|||+||+|++|||+++++|+.+++|||||||||||||+|||++|
T Consensus 227 e~t~~yl~~~~~~~~~~~~~D~da~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g~~id~~~IGSCTngr~~Dl~~a 306 (412)
T TIGR01343 227 EKTRAYLKERYKEPFRVYKSDEDAEYAKEVEIDASQLEPVVAAPHNVDNVHPVSEVEGIEVDQVFIGSCTNGRIEDLRVA 306 (412)
T ss_pred HHHHHHHHhhCcccccccCCCCCCCEEEEEEEEcccceeeEecCCCCCcEEEhHHhCCCeeeEEEEecCCCCChHHHHHH
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccc--ceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEE
Q 012009 390 AKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMAS 467 (473)
Q Consensus 390 A~iL~~~G~kv~--V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~ 467 (473)
|+||+ |+|++ ||++|+|+|++||.+++++ |++++|.+||+.| .+||||+|+|++ +|++++||+|
T Consensus 307 A~il~--G~kv~~~v~~~v~P~S~~V~~~~~~~--------G~~~~l~~aG~~i-~~pgCg~C~G~~---~g~l~~ge~~ 372 (412)
T TIGR01343 307 AKILK--GRKVAPDVRLIVIPASRAVYLQALKE--------GLIEIFVKAGAVV-STPGCGPCLGRH---QGVLAPGEVC 372 (412)
T ss_pred HHHHc--CCCCCCCCCEEEeCCCHHHHHHHHHc--------CcHHHHHHcCCEE-cCCccccccCcC---CCcCCCCCEE
Confidence 99999 88997 9999999999999999986 4899999999999 699999999994 5679999999
Q ss_pred EeecCC
Q 012009 468 LCLHDK 473 (473)
Q Consensus 468 iSTsn~ 473 (473)
|||+|.
T Consensus 373 vsT~NR 378 (412)
T TIGR01343 373 ISTSNR 378 (412)
T ss_pred EEecCC
Confidence 999994
No 4
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=6.6e-123 Score=961.86 Aligned_cols=375 Identities=41% Similarity=0.690 Sum_probs=362.9
Q ss_pred CcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHH
Q 012009 69 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 148 (473)
Q Consensus 69 ~Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~~~~~~~~ 148 (473)
|||+||||++|++++ +++||++++++|++|+||.|+|++++.|++ +| .+||||+++++++||++|+.+.+.+++++
T Consensus 1 ~Tl~eKIl~~h~~~~-v~~G~~v~~~vD~~~~hD~t~p~a~~~~~~-~g--~~v~~p~~~~~~~DH~~p~~~~~~a~~~~ 76 (412)
T TIGR02086 1 MTLAEKILSEKVGRP-VEAGEIVEVEVDLAMAHDGTGPLAIETLRE-LG--ARVEDPEKIVIFFDHVVPPPTVEAANRQK 76 (412)
T ss_pred CCHHHHHHHHhcCCc-cCCCCEEEEECCEEEEecccHHHHHHHHHH-cC--CcccCCCCEEEECCCCCCCCCHHHHHHHH
Confidence 799999999999886 899999999999999999999999999975 66 68999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHcc
Q 012009 149 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 228 (473)
Q Consensus 149 ~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~t 228 (473)
.+|+|++++||++ |+ +++|||||+++|+|+++||++|||+||||||+||||+||||||+||++++|+|
T Consensus 77 ~~r~fa~~~gi~~-~~-----------~g~GI~H~v~~E~G~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~lat 144 (412)
T TIGR02086 77 EIREFAKEHGIPV-FD-----------VGEGICHQVLVEEGYAGPGMVVVGGDSHTCTSGAVGAFATGMGATDVAIALAT 144 (412)
T ss_pred HHHHHHHHcCCcE-EC-----------CCCCeEeEEhhhcCccCCCcEEEecCCCccccchhhheeecccHHHHHHHHhc
Confidence 9999999999985 54 46899999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeeccC
Q 012009 229 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 308 (473)
Q Consensus 229 g~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~ 308 (473)
|++||+|||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||.|+++++||+++|||||||++|+||++|+||+
T Consensus 145 g~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~~i~~~ 224 (412)
T TIGR02086 145 GKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDERMTLCNMAVEAGAKAGIVVP 224 (412)
T ss_pred CCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHHhhhhhcccccCceeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhcCCCCCcccccCCCCeecEEEEEECCCcceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHH
Q 012009 309 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLA 388 (473)
Q Consensus 309 D~~t~~YL~~r~~~~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~ 388 (473)
|++|++||+.|++.+|+.+++|+||.|+++++||||+|||+||+|++|+|+.+++++.+++|||||||||||||+|||++
T Consensus 225 D~~t~~yl~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~va~P~~P~nv~~v~~~~~~~id~~~IGSCTngr~~Dl~~ 304 (412)
T TIGR02086 225 DEETYEYLKKRRGYEFRILRPDPGAKYDDEIEIDLSDLEPLVAVPHSVDNVRPVSDVEGTEIDQVFIGSCTNGRIEDLRI 304 (412)
T ss_pred CHHHHHHHHhcCCcccccccCCCCCCEEEEEEEEccceeEEecCCCChHhcccchhhcccceeEEEEeccCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccc--ceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCE
Q 012009 389 AAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMA 466 (473)
Q Consensus 389 AA~iL~~~G~kv~--V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~ 466 (473)
||+||| |+|++ ||++|+|+|++||++++++ |++++|.+|||.| .+||||+|+|++ +|++++||+
T Consensus 305 aA~vLk--G~kv~~~v~~~v~P~S~~v~~~~~~~--------G~~~~~~~aGa~i-~~pgCg~C~G~~---~g~~~~ge~ 370 (412)
T TIGR02086 305 AAEILE--GRRVHPDVRLIVVPASRKVYERALEE--------GIILTLIRAGAII-CPPGCGPCLGRH---MGVLGDGEV 370 (412)
T ss_pred HHHHHc--CCCCCCCcCEEEeCCCHHHHHHHHHc--------CcHHHHHHcCCEE-cCCccccccCcC---CCcCCCCCE
Confidence 999999 88987 9999999999999999986 4899999999999 699999999994 567999999
Q ss_pred EEeecCC
Q 012009 467 SLCLHDK 473 (473)
Q Consensus 467 ~iSTsn~ 473 (473)
||||+|.
T Consensus 371 ~vsT~NR 377 (412)
T TIGR02086 371 CVSTTNR 377 (412)
T ss_pred EEEecCC
Confidence 9999994
No 5
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=1.2e-122 Score=961.40 Aligned_cols=379 Identities=45% Similarity=0.797 Sum_probs=365.7
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHH
Q 012009 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRN 146 (473)
Q Consensus 67 ~~~Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~~~~~~ 146 (473)
|||||+||||++|+++. +++||++++++|++|+||.|+|++++.|++ +|. .+||||+++++++||++|+.+.+.+++
T Consensus 1 m~~Tl~eKIl~~h~~~~-v~~G~~v~v~vD~~~~hD~t~p~a~~~~~~-~g~-~~v~~P~~~~~~~DH~~p~~~~~~a~~ 77 (418)
T PRK00402 1 MGMTLAEKILARHSGRD-VSPGDIVEAKVDLVMAHDITGPLAIKEFEK-IGG-DKVFDPSKIVIVFDHFVPAKDIKSAEQ 77 (418)
T ss_pred CCcCHHHHHHHHhcCCC-CCCCCEEEEECCEEEEecccHHHHHHHHHH-cCC-CccCCCCcEEEECCCCCCCCChhhHHH
Confidence 58999999999999986 789999999999999999999999999975 663 789999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHH
Q 012009 147 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL 226 (473)
Q Consensus 147 ~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l 226 (473)
++.+|+|+++|||++||+. ++|||||+++|+|+++||+++||+||||||+||||+||||||++|++.+|
T Consensus 78 ~~~~r~fa~~~gi~~~~~~-----------g~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~GalG~~a~GvG~td~~~~l 146 (418)
T PRK00402 78 QKILREFAKEQGIPNFFDV-----------GEGICHQVLPEKGLVRPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAM 146 (418)
T ss_pred HHHHHHHHHHcCCcceeCC-----------CCCEeeEehhhcCccCCCcEEEeCCCCccccCccceEEecccHHHHHHHH
Confidence 9999999999999988875 46999999999999999999999999999999999999999999999999
Q ss_pred ccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeec
Q 012009 227 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV 306 (473)
Q Consensus 227 ~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif 306 (473)
+||++||+|||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|+|+++||+++|||||||++|+||++|||
T Consensus 147 ~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NM~~E~GA~~~i~ 226 (418)
T PRK00402 147 ATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANMAIEAGAKAGIF 226 (418)
T ss_pred hcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHHHHhhhhhcccccCceeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHhhhcCCCCCcccccCCCCeecEEEEEECCCcceeeecCCCCCccccccccccceeceEEEecCCCCChHHH
Q 012009 307 PADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDF 386 (473)
Q Consensus 307 ~~D~~t~~YL~~r~~~~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl 386 (473)
|+|++|++||+.|..++|..+.+|++|.|+++++||||+|||+||+|++|||+.+++|+++++||+||||||||||+|||
T Consensus 227 ~~D~~t~~yl~~~~~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g~~id~~~IGSCTngr~eDl 306 (418)
T PRK00402 227 APDEKTLEYLKERAGRDYKPWKSDEDAEYEEVYEIDLSKLEPQVAAPHLPDNVKPVSEVEGTKVDQVFIGSCTNGRLEDL 306 (418)
T ss_pred cCChHHHHHHHhhcccccccccCCCCCCEEEEEEEEcccceeeeecCCCccceeEchhhCCceeeEEEEecCCCCChHHH
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccc--ceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCC
Q 012009 387 LAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEP 464 (473)
Q Consensus 387 ~~AA~iL~~~G~kv~--V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~g 464 (473)
++||+||| |+|++ ||++|+|+|++||.+++++ |++++|++|||.| .+||||+|+|++ +|++++|
T Consensus 307 ~~aA~il~--G~kv~~~V~~~v~PgS~~V~~~~~~~--------G~~~~l~~aGa~i-~~pgCg~C~G~~---~g~~~~g 372 (418)
T PRK00402 307 RIAAEILK--GRKVAPGVRLIVIPASQKIYLQALKE--------GLIEIFVDAGAVV-STPTCGPCLGGH---MGVLAPG 372 (418)
T ss_pred HHHHHHHc--CCCCCCCccEEEeCCCHHHHHHHHHc--------CcHHHHHHcCCEE-cCCccccccCcC---CCcCCCC
Confidence 99999998 88887 9999999999999999986 4899999999999 699999999995 5579999
Q ss_pred CEEEeecCC
Q 012009 465 MASLCLHDK 473 (473)
Q Consensus 465 e~~iSTsn~ 473 (473)
|+||||+|.
T Consensus 373 e~~vsT~NR 381 (418)
T PRK00402 373 EVCLSTTNR 381 (418)
T ss_pred CEEEEecCC
Confidence 999999994
No 6
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=1.2e-120 Score=959.90 Aligned_cols=379 Identities=34% Similarity=0.542 Sum_probs=360.6
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCc------
Q 012009 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSD------ 140 (473)
Q Consensus 67 ~~~Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~------ 140 (473)
|+|||+||||++|+++. +++| +++++||++|+||+|+|++++.|++ +| .+||||+++++++||++|+.+
T Consensus 2 m~~Tl~eKI~~~h~~~~-~~~g-~v~~~vD~~~~hD~t~p~a~~~~~~-~g--~~v~~P~~~~~~~DH~vp~~~~~~~~~ 76 (471)
T PRK12466 2 MPRTLYDKLWDSHTVAR-LDDG-HVLLYIDRHLLNEYTSPQAFSGLRA-RG--RTVRRPDLTLAVVDHVVPTRPGRDRGI 76 (471)
T ss_pred CCcCHHHHHHHHhcCCC-CCCC-EEEEeccEEEEeccccHHHHHHHHH-cC--CcccCCCCeEEEeCCCCCCCccccccc
Confidence 78999999999999986 7777 9999999999999999999999975 55 489999999999999999998
Q ss_pred --HHHHHHHHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCC
Q 012009 141 --ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIG 218 (473)
Q Consensus 141 --~~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG 218 (473)
...+++++++|+||++|||+ ||+++ ||++|||||+++|+|+++||++|||+||||||+||||+||||||
T Consensus 77 ~~~~~~~~~~~~r~~a~~~gi~-~~~~~--------~p~~GI~Hqv~~E~G~~~PG~~ivg~DSHT~t~GalGala~GvG 147 (471)
T PRK12466 77 TDPGGALQVDYLRENCADFGIR-LFDVD--------DPRQGIVHVVAPELGLTLPGMVIVCGDSHTTTYGALGALAFGIG 147 (471)
T ss_pred cCHHHHHHHHHHHHHHHHcCCe-eeccC--------CCCCCEEeEEccccCcccCCceEEccCCCcCCcChhhheEEccC
Confidence 88899999999999999994 67764 57899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccc
Q 012009 219 NTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298 (473)
Q Consensus 219 ~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E 298 (473)
+||++++|+||++||+|||+|+|+|+|+|++||++|||||+||++|+.+|++||+|||+|++|++||+++|||||||++|
T Consensus 148 ~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~~~R~Ti~NMa~E 227 (471)
T PRK12466 148 TSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSMEGRMTLCNMAVE 227 (471)
T ss_pred HHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeeccCChhHHHHhhhcCC-----------CCCcccccCCCCeecEEEEEECCCcceeeecCCCCCccccccc---
Q 012009 299 AGGKNGVVPADGTTFKYLEDKTS-----------LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE--- 364 (473)
Q Consensus 299 ~GA~~gif~~D~~t~~YL~~r~~-----------~~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e--- 364 (473)
+||++||||+|++|++||+.|++ +.|+.+++|++|.|+++++||||+|||+||+|++|+|+.+++|
T Consensus 228 ~GA~~gi~~~D~~t~~yl~~~~~~~~~~~~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~ 307 (471)
T PRK12466 228 AGARGGLIAPDETTFDYLRGRPRAPKGALWDAALAYWRTLRSDADAVFDREVEIDAADIAPQVTWGTSPDQAVPITGRVP 307 (471)
T ss_pred cCceEEEecCChHHHHHHHhCCCchhHHHHHHHHhhhhcccCCCCCceEEEEEEEcccceEeecCCCChhhceEccccCc
Confidence 99999999999999999999885 3477889999999999999999999999999999999999988
Q ss_pred ----------------------------cccceeceEEEecCCCCChHHHHHHHHHHHhcCCccc--ceeEEecchHHHH
Q 012009 365 ----------------------------CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVW 414 (473)
Q Consensus 365 ----------------------------~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--V~~~V~PaS~~V~ 414 (473)
+.+++||+||||||||||+|||++||+||| |+|++ |+++|+|+|++||
T Consensus 308 ~~~~~~~~~~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~aA~ilk--G~kv~~~V~~~v~PgS~~V~ 385 (471)
T PRK12466 308 DPAAEADPARRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAAAAVLR--GRKVAPGVRAMVVPGSGAVR 385 (471)
T ss_pred ChhhhcchhhhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHHHHHHc--CCCCCCCccEEEECCCHHHH
Confidence 678999999999999999999999999999 99997 9999999999999
Q ss_pred HHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 415 MDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 415 ~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
.+|+++ |++++|++|||.| .+||||+|+|++ +|++++||+|+||+|.
T Consensus 386 ~~~~~~--------Gl~~~~~~aG~~i-~~~gCg~C~G~~---~~~~~~ge~~vsT~NR 432 (471)
T PRK12466 386 RQAEAE--------GLARIFIAAGFEW-REPGCSMCLAMN---DDVLAPGERCASTTNR 432 (471)
T ss_pred HHHHHC--------CcHHHHHHcCCEE-cCCccccccCcC---CCCCCCCCEEEEecCC
Confidence 999986 4899999999999 599999999996 4569999999999994
No 7
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=2.8e-120 Score=955.78 Aligned_cols=379 Identities=33% Similarity=0.535 Sum_probs=358.8
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCc------
Q 012009 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSD------ 140 (473)
Q Consensus 67 ~~~Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~------ 140 (473)
|+|||+||||++|+++. ++||++++++|++|+||.|+|++++.|++ +| .+||||+++++++||++|+.+
T Consensus 1 M~~Tl~eKI~~~h~~~~--~~g~~v~~~vD~~~~hD~t~~~a~~~~~~-~g--~~v~~p~~~~~~~DH~vp~~~~~~~~~ 75 (465)
T TIGR00170 1 MPRTLYEKLFDAHIVYE--AEGETPLLYIDRHLIHEVTSPQAFEGLRQ-AG--RKVRRPQKTFATMDHNIPTQNRDFNIK 75 (465)
T ss_pred CCCCHHHHHHHHhcCCC--CCCCEEEEEeeeeeecccchHHHHHHHHH-cC--CCcCCCcCEEEEeCCCCCCCCcccccc
Confidence 57999999999999886 58999999999999999999999999975 56 589999999999999999976
Q ss_pred -HHHHHHHHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCCh
Q 012009 141 -ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 219 (473)
Q Consensus 141 -~~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~ 219 (473)
...+++++++|+|+++|||+ ||+.+ ||++|||||+++|+|+++||++|||+||||||+||||+||||||+
T Consensus 76 ~~~~~~~~~~~r~~a~~~gi~-~~~v~--------~p~~GI~Hqv~~E~g~~~PG~~ivgtDSHT~t~GalGala~GvG~ 146 (465)
T TIGR00170 76 DEVAKIQVTELEKNCKEFGVR-LFDLH--------SVDQGIVHVMGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGT 146 (465)
T ss_pred CHHHHHHHHHHHHHHHHhCCe-eeccC--------CCCCCEeCeEccccCcccCCceEEecCCCccccccccceEEccCH
Confidence 37778899999999999995 57654 678999999999999999999999999999999999999999999
Q ss_pred hHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhccccc
Q 012009 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEA 299 (473)
Q Consensus 220 td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~ 299 (473)
||++++|+||++||+|||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|+||++||+++|||||||++|+
T Consensus 147 te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~~R~Ti~NMa~E~ 226 (465)
T TIGR00170 147 SEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNMAIEA 226 (465)
T ss_pred HHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHHHhhhhhhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeccCChhHHHHhhhcCC-----------CCCcccccCCCCeecEEEEEECCCcceeeecCCCCCccccccc----
Q 012009 300 GGKNGVVPADGTTFKYLEDKTS-----------LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE---- 364 (473)
Q Consensus 300 GA~~gif~~D~~t~~YL~~r~~-----------~~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e---- 364 (473)
||++||||+|++|++||+.|++ +.|+.+++|++|.|+++++||||+|||+||+|++|+|+.+++|
T Consensus 227 GA~~gi~~~D~~t~~yl~~r~~~~~~~~~~~~~~~~~~l~~d~~a~Y~~~i~iDls~leP~Va~P~~P~n~~~v~e~~~~ 306 (465)
T TIGR00170 227 GARAGLIAPDETTFEYCKGRPHAPKGKEFDKAVAYWKTLKTDEGAVFDTVITLEANDISPQVTWGTNPGQVLPVNSEVPD 306 (465)
T ss_pred CceeeEecCChhHHHHHhcCCcccchhHHHHHHHhhhhccCCCCCceeEEEEEEcccceeeecCCCChhhccCccccCCC
Confidence 9999999999999999998875 2377888999999999999999999999999999999999998
Q ss_pred ---------------------------cccceeceEEEecCCCCChHHHHHHHHHHHhcCCccc--ceeEEecchHHHHH
Q 012009 365 ---------------------------CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWM 415 (473)
Q Consensus 365 ---------------------------~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--V~~~V~PaS~~V~~ 415 (473)
+.+++||+||||||||||+|||++||+||| |+|++ |+++|+|+|++||.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA~vlk--G~kv~~~V~~~v~PgS~~V~~ 384 (465)
T TIGR00170 307 PESFADPVDKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAAAVIK--GRKVADNVKALVVPGSGLVKL 384 (465)
T ss_pred hhhhcchhhhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHHHHhc--CCCcCCCccEEEECCCHHHHH
Confidence 678999999999999999999999999999 99997 99999999999999
Q ss_pred HhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 416 DVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 416 ~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
+|+++ |++++|++|||.| .+||||+|+|++ +|++++||+|+||+|.
T Consensus 385 ~~~~~--------Gl~~~l~~aG~~i-~~~gCg~C~G~~---~~~~~~ge~~isTsNR 430 (465)
T TIGR00170 385 QAEKE--------GLDKIFIEAGFEW-REPGCSMCLGMN---NDRLPEGERCASTSNR 430 (465)
T ss_pred HHHHC--------CcHHHHHHcCCEE-cCCccccccCcC---CCCCCCCCEEEEecCC
Confidence 99986 4899999999999 599999999995 4579999999999994
No 8
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=2.9e-119 Score=949.17 Aligned_cols=379 Identities=34% Similarity=0.527 Sum_probs=359.5
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcH-----
Q 012009 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDE----- 141 (473)
Q Consensus 67 ~~~Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~----- 141 (473)
|+|||+||||++|+++. + +||++++++|++|+||.|+|++++.|++ +| .+||||+++++++||++|+.+.
T Consensus 1 m~~tl~eKIl~~h~~~~-~-~g~~v~~~vD~~~~hD~t~~~a~~~~~~-~g--~~v~~p~~~~~~~DH~v~~~~~~~~~~ 75 (466)
T PRK05478 1 MGKTLYDKLWDAHVVHE-E-EDGPDLLYIDRHLVHEVTSPQAFEGLRL-AG--RKVRRPDLTFATMDHNVPTTDRDLPIA 75 (466)
T ss_pred CCCCHHHHHHHHhcCCC-C-CCCEEEEEeccceeecccHHHHHHHHHH-cC--CCccCCCCeEEEcCCCCCCCccccccc
Confidence 57999999999999986 3 9999999999999999999999999976 55 4899999999999999999887
Q ss_pred --HHHHHHHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCCh
Q 012009 142 --RANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 219 (473)
Q Consensus 142 --~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~ 219 (473)
..+++++++|+|+++|||+ ||+.+ ||++|||||+++|+|+++||+++||+||||||+||||+||||||+
T Consensus 76 ~~~~~~~~~~~r~~a~~~gi~-~~~~~--------~~~~GI~Hqv~~E~g~~~PG~~ivGtDSHT~t~GalGa~a~GvG~ 146 (466)
T PRK05478 76 DPVSRIQVETLEKNCKEFGIT-LFDLG--------DPRQGIVHVVGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGT 146 (466)
T ss_pred CHHHHHHHHHHHHHHHHcCCe-eeccC--------CCCCCEeCeEccccccccCCceEEecCCCccccchhhheEeCCCH
Confidence 7788899999999999995 56654 678999999999999999999999999999999999999999999
Q ss_pred hHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhccccc
Q 012009 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEA 299 (473)
Q Consensus 220 td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~ 299 (473)
+|++.+|+||++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|+|+++||+++|||||||++|+
T Consensus 147 td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~~R~Ti~NMa~E~ 226 (466)
T PRK05478 147 SEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNMSIEA 226 (466)
T ss_pred HHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHHHHhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeccCChhHHHHhhhcCCC-----------CCcccccCCCCeecEEEEEECCCcceeeecCCCCCccccccc----
Q 012009 300 GGKNGVVPADGTTFKYLEDKTSL-----------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE---- 364 (473)
Q Consensus 300 GA~~gif~~D~~t~~YL~~r~~~-----------~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e---- 364 (473)
||++||||+|++|++||++|..+ .|+.+.+|++|.|+++++||||+|||+||+|++|+|+++++|
T Consensus 227 GA~~~i~~~De~t~~yl~~r~~~~~~~~~~~a~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~ 306 (466)
T PRK05478 227 GARAGLVAPDETTFEYLKGRPFAPKGEDWDKAVAYWKTLKSDEDAVFDKVVTLDAADIEPQVTWGTNPGQVISIDGKVPD 306 (466)
T ss_pred CceeeeecCCHhHHHHHhcCCccccHHHHHHHHHhhhcccCCCCCceeEEEEEEcccceeeecCCCChhhceEccccCcC
Confidence 99999999999999999987754 477888999999999999999999999999999999999998
Q ss_pred ---------------------------cccceeceEEEecCCCCChHHHHHHHHHHHhcCCccc--ceeEEecchHHHHH
Q 012009 365 ---------------------------CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWM 415 (473)
Q Consensus 365 ---------------------------~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--V~~~V~PaS~~V~~ 415 (473)
+++++|||||||||||||+|||++||+||+ |+|++ |+++|+|+|++||.
T Consensus 307 ~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~ilk--G~kv~~~V~~~v~PgS~~V~~ 384 (466)
T PRK05478 307 PEDFADPVKRASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAAVVK--GRKVAPGVRALVVPGSGLVKA 384 (466)
T ss_pred hhhhcchhhhhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHHHHhc--CCCCCCCceEEEECCCHHHHH
Confidence 688999999999999999999999999999 99997 99999999999999
Q ss_pred HhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 416 DVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 416 ~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
+++++ |++++|.+|||.| .+||||+|+|++. |++++||+||||+|.
T Consensus 385 ~~~~~--------Gl~~~l~~aG~~i-~~~gCg~C~G~~~---~~l~~ge~~vst~NR 430 (466)
T PRK05478 385 QAEAE--------GLDKIFIEAGFEW-REPGCSMCLAMNP---DKLPPGERCASTSNR 430 (466)
T ss_pred HHHHC--------CcHHHHHHcCCEE-cCCccccccCcCC---CCCCCCCEEEEecCC
Confidence 99986 4899999999999 6999999999964 569999999999994
No 9
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=5.2e-117 Score=911.84 Aligned_cols=350 Identities=47% Similarity=0.791 Sum_probs=336.6
Q ss_pred EEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCCceeecccccCCcccCCC
Q 012009 97 ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPD 176 (473)
Q Consensus 97 ~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Pp 176 (473)
++|+||.|+|++++.|++ .|. .+||||+|+++++||++|+.+...+++++++|+|++++||+ ||+..
T Consensus 1 ~~~~hD~t~p~a~~~~~~-~g~-~~v~dp~k~~~~~DH~vp~~~~~~~~~~~~~r~~a~~~gi~-~~~~~---------- 67 (382)
T cd01583 1 LHLVHDVTSPQAFEGLRE-AGR-EKVWDPEKIVAVFDHNVPTPDIKAAEQVKTLRKFAKEFGIN-FFDVG---------- 67 (382)
T ss_pred CEEEEeccHHHHHHHHHH-hCC-cccCCCCceEEEcCCCCCCCCHHHHHHHHHHHHHHHHhCcc-cccCC----------
Confidence 478999999999999975 664 68999999999999999999999999999999999999985 57652
Q ss_pred CCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHH
Q 012009 177 YKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDL 256 (473)
Q Consensus 177 g~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDl 256 (473)
++|||||+++|+|+++||+++||+||||||+||||+||||||+||++++|+||++||+|||+|+|+|+|+|++||++|||
T Consensus 68 g~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~vPeti~v~l~G~l~~gV~aKDv 147 (382)
T cd01583 68 RQGICHVILPEKGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDV 147 (382)
T ss_pred CCCEeeEEeccccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeCCcEEEEEEEeecCCCcCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeeccCChhHHHHhhhcCCCCCcccccCCCCeec
Q 012009 257 ILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFL 336 (473)
Q Consensus 257 iL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~D~~t~~YL~~r~~~~~~~l~sD~dA~Y~ 336 (473)
||+||++|+.+|++||+|||+|+++++||+++|||||||++|+|||+||||+|++|++||+.|++++|+.+++|+||.|+
T Consensus 148 iL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~yL~~~~~~~~~~~~~D~~a~Y~ 227 (382)
T cd01583 148 ILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAYWKELKSDEDAEYD 227 (382)
T ss_pred HHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHHHHhcCccchhhcCCCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCcceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCccc--ceeEEecchHHHH
Q 012009 337 SEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVW 414 (473)
Q Consensus 337 ~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--V~~~V~PaS~~V~ 414 (473)
++++||||+|||+||+|++|||+.+++|+.+++|||||||||||||+|||++||+||| |+|++ ||++|+|+|++||
T Consensus 228 ~~~~iDls~leP~va~P~~P~nv~~v~e~~~~~Id~v~IGSCTNgr~eDl~~AA~iLk--G~kv~~~Vr~~v~P~S~~V~ 305 (382)
T cd01583 228 KVVEIDASELEPQVAWPHSPDNVVPVSEVEGIKIDQVFIGSCTNGRLEDLRAAAEILK--GRKVADGVRLIVVPASQRVY 305 (382)
T ss_pred EEEEEEcccceeeEecCCCccceEECcccCCcceeEEEEeccCCCChHHHHHHHHHhc--CCCCCCCccEEEECCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 88997 9999999999999
Q ss_pred HHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 415 MDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 415 ~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
++|+++ |++++|++|||.| .+||||+|+|++ +|++++||+|+||+|.
T Consensus 306 ~~~~~~--------G~~~~l~~aGa~i-~~pgCg~C~G~~---~g~~~~ge~~vsT~NR 352 (382)
T cd01583 306 KQAEKE--------GLIEIFIEAGAEV-RPPGCGACLGGH---MGVLAPGERCVSTSNR 352 (382)
T ss_pred HHHHHC--------CcHHHHHHCCCEE-eCCCcccccCCC---CCcCCCCCEEEEecCC
Confidence 999986 4899999999999 599999999995 5679999999999994
No 10
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=8.2e-114 Score=938.60 Aligned_cols=378 Identities=27% Similarity=0.464 Sum_probs=355.4
Q ss_pred CCcHHHHHHHHhc-----CCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHH
Q 012009 68 AMTLTEKIFSRAS-----EKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDER 142 (473)
Q Consensus 68 ~~Tl~EKIla~h~-----~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~~ 142 (473)
||||+||||++|+ ++ .|++||+|++++|++|+||.|||++++ |. ++|. .+||+|+++++++||++|+.+.+
T Consensus 1 ~~Tl~EKIl~~h~v~~~~g~-~v~~G~~i~i~vD~~l~hD~t~p~~~~-~~-~~g~-~~V~~p~~~v~~~DH~v~~~~~~ 76 (712)
T TIGR00139 1 GQNLTEKIVQKYAVGLPEGK-FVHSGDYVSIKPAHCMSHDNSWPCALK-FM-GIGA-SKIHNPDQIVMTLDHDIQNKSDK 76 (712)
T ss_pred CCCHHHHHHHHhcccccCCc-ccCCCCEEEEecCEEEEEeccHHHHHH-HH-HcCC-CccCCCCCEEEEcCCCCCCCCHH
Confidence 5899999999998 43 588999999999999999999999988 43 3774 79999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHH
Q 012009 143 ANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDA 222 (473)
Q Consensus 143 ~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~ 222 (473)
++++|+++|+||++|||+ ||+ ||+|||||++.|+||++||+++||+||||||+||||+||||||++|+
T Consensus 77 ~~~~~~~l~~fAkk~Gi~-f~~-----------~g~GI~Hqv~~E~g~a~PG~~ivGsDSHT~t~GalGala~GvG~tDv 144 (712)
T TIGR00139 77 NLKKYKNIEEFAKKHGID-FYP-----------AGRGIGHQIMIEEGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTDA 144 (712)
T ss_pred HHHHHHHHHHHHHHhCCe-EEC-----------CCCCeEeEeecccCcccCCeEEEccCcCcCccchhhheeeccchHHH
Confidence 999999999999999995 564 57899999999999999999999999999999999999999999999
Q ss_pred HHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEec--cccccCChhhhhhhhhcccccC
Q 012009 223 GFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVG--TTVERLSMEERMTLCNMVVEAG 300 (473)
Q Consensus 223 a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G--~gv~~Ls~d~R~Ti~NMa~E~G 300 (473)
+++|+||++|++|||+|+|+|+|+||+||++|||||+|+++|+++|++|++|||+| +|+++||+++|||||||++|+|
T Consensus 145 a~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~~Ls~~~R~TI~NM~~E~G 224 (712)
T TIGR00139 145 AAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLNALPIDHRLTIANMTTEWG 224 (712)
T ss_pred HHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhhcCCHHHHhhHhhhhHhhC
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceeeeccCChhHHHHhhhcCCC--------------------------CCcccccCCCCeecEEEEEECCCcceeeecCC
Q 012009 301 GKNGVVPADGTTFKYLEDKTSL--------------------------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPH 354 (473)
Q Consensus 301 A~~gif~~D~~t~~YL~~r~~~--------------------------~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~ 354 (473)
|++|+||+|++|++||+.|++. .|..+.+|+||.|+++++||||+|+|+||+|+
T Consensus 225 A~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~aD~~A~Y~~~~~iDLs~leP~vA~P~ 304 (712)
T TIGR00139 225 ALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEIPLKADKDAHYAKELFIDLASLSHYVSGPN 304 (712)
T ss_pred ceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhccCCCCCCCCEEEEEEEEcccceeeeeCCC
Confidence 9999999999999999987421 13567899999999999999999999999999
Q ss_pred CCCcccccccc--ccceeceEEEecCCCCChHHHHHHHHHHHh-------cCCccc--ceeEEecchHHHHHHhhcCCCC
Q 012009 355 SPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLA-------SGKKVK--VPTFLVPATQKVWMDVYTLPVP 423 (473)
Q Consensus 355 sPdn~~~v~e~--~~~~Id~a~IGSCTngr~eDl~~AA~iL~~-------~G~kv~--V~~~V~PaS~~V~~~a~~~g~~ 423 (473)
+|+|+.+++++ .+++|||||||||||+|+|||++||+||++ +++||+ |+++|+|+|++|+++|+++
T Consensus 305 ~p~~~~~v~el~~~~~~Id~~~IGSCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~--- 381 (712)
T TIGR00139 305 SVKVANPLKDLEAQDIKIDKAYLVSCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGN--- 381 (712)
T ss_pred CCCCcCcHHHhhhcCceeeeEEEecCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHC---
Confidence 99999999999 899999999999999999999999999984 247887 9999999999999999986
Q ss_pred CCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 424 GSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 424 g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
|++++|++|||.| .+||||+|+|++ +|++++||+||||+|.
T Consensus 382 -----Gl~~~l~~AGa~i-~~~gCg~CiG~~---~~~~~~gev~isT~NR 422 (712)
T TIGR00139 382 -----GAWEKLLEAGAIP-LPAGCGPCIGLG---AGLLEPGEVGISASNR 422 (712)
T ss_pred -----CcHHHHHHcCCEE-cCCccccccCcC---CCCCCCCCEEEEecCC
Confidence 4899999999999 699999999995 4568999999999994
No 11
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=2.1e-113 Score=883.03 Aligned_cols=347 Identities=30% Similarity=0.504 Sum_probs=332.0
Q ss_pred eEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCCceeecccccCCcccCC
Q 012009 96 DILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANP 175 (473)
Q Consensus 96 D~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~P 175 (473)
|++|+||.|+|++++.|++ +|. .+||+| ++++++||++|+.+.+++++++++|+|+++|||+ ||+
T Consensus 1 D~~~~hD~t~p~a~~~~~~-~g~-~~v~~~-~~~~~~DH~~p~~~~~~a~~~~~lr~~a~~~gi~-~~~----------- 65 (380)
T cd01585 1 DQTLTQDATGTMAYLQFEA-MGV-DRVRTE-LSVSYVDHNTLQTDFENADDHRFLQTVAARYGIY-FSR----------- 65 (380)
T ss_pred CceEEEeccHHHHHHHHHH-cCC-CeeCCC-CeEEEeCCCCCCCChHHHHHHHHHHHHHHHcCCE-EEC-----------
Confidence 7899999999999999975 774 689999 6999999999999999999999999999999995 664
Q ss_pred CCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHH
Q 012009 176 DYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKD 255 (473)
Q Consensus 176 pg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKD 255 (473)
|++|||||+++|+ +++||+++||+||||||+||||+||||||+||++++|+||++||+|||+|+|+|+|+|++||++||
T Consensus 66 ~g~GI~H~v~~E~-~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~vPetv~V~l~G~l~~gV~aKD 144 (380)
T cd01585 66 PGNGICHQVHLER-FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPWVTAKD 144 (380)
T ss_pred CCCCeeeeecHhh-ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccCCcEEEEEEEccCCCCcCHHH
Confidence 4689999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeeccCChhHHHHhhhcCCC-CCcccccCCCCe
Q 012009 256 LILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSL-PYEPVYSDEKAS 334 (473)
Q Consensus 256 liL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~D~~t~~YL~~r~~~-~~~~l~sD~dA~ 334 (473)
|||+|+++|+.+|++|++|||+|+++++||+++|||||||++|+|||+||||+|++|++||+.+++. +|+.+.+|+||.
T Consensus 145 viL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~yl~~~gr~~~~~~l~~D~~a~ 224 (380)
T cd01585 145 VILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLAAQGREDDWVELAADADAE 224 (380)
T ss_pred HHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCchhccccCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998854 688999999999
Q ss_pred ecEEEEEECCCcceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCccc--ceeEEecchHH
Q 012009 335 FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQK 412 (473)
Q Consensus 335 Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--V~~~V~PaS~~ 412 (473)
|+++++||||+|||+||+|++|||+.+++|+++++||+||||||||||+|||++||+||| |+|++ ||++|+|+|++
T Consensus 225 Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g~~Id~~~IGSCTngr~eDl~~aA~iLk--G~kv~~~V~~~v~P~S~~ 302 (380)
T cd01585 225 YDEEIEIDLSELEPLIARPHSPDNVVPVREVAGIKVDQVAIGSCTNSSYEDLMTVAAILK--GRRVHPHVSMVVAPGSKQ 302 (380)
T ss_pred eEEEEEEEcccceeeecCCCCCCceeEhhhhCCceEEEEEEecCCCCCcHHHHHHHHHHc--CCCCCCCceEEEECCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999 99997 99999999999
Q ss_pred HHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 413 VWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 413 V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
||++|+++ |++++|++|||.| .+||||+|+|++.+ +++||+|+||+|.
T Consensus 303 V~~~a~~~--------Gl~~~l~~aGa~i-~~pgCg~C~G~~~~----~~~ge~~vsT~NR 350 (380)
T cd01585 303 VLEMLARN--------GALADLLAAGARI-LESACGPCIGMGQA----PPTGGVSVRTFNR 350 (380)
T ss_pred HHHHHHHC--------CcHHHHHHcCCEE-eCCCceeccCCCCC----CCCCcEEEEccCC
Confidence 99999986 4899999999999 69999999998532 7999999999994
No 12
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=7.9e-113 Score=930.63 Aligned_cols=373 Identities=31% Similarity=0.489 Sum_probs=356.2
Q ss_pred cHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHHH
Q 012009 70 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDI 149 (473)
Q Consensus 70 Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~~~~~~~~~ 149 (473)
||+||||++|+++..+++|++|++++|++++||.|+|+++..|++ +|. ++|+ |+++++++||++|+.+.+++++|++
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~-~g~-~~v~-~~~~~~~~DH~~~~~d~~~a~~~~~ 77 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEA-LEM-DEVK-TELAAQYCDHNMLQFDFKNADDHKF 77 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHH-cCC-CccC-CCCeEEECCCCCCCCChhhHHHHHH
Confidence 899999999999887999999999999999999999999999975 774 5776 8999999999999999999999999
Q ss_pred HHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHccc
Q 012009 150 LRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTG 229 (473)
Q Consensus 150 lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~tg 229 (473)
+|+|+++||+. || |||+|||||++.|+ +++||+++||+||||||+||||+||||||++|++++|+||
T Consensus 78 l~~~a~~~gi~-~~-----------~pg~GI~Hqv~~E~-~a~PG~~ivGtDSHT~t~GalG~la~GvG~td~a~~matg 144 (658)
T TIGR01342 78 LMSAAGKFGAW-FS-----------KPGNGICHNVHKEN-FAAPGKTLLGSDSHTPTAGGLGMLAIGAGGIDIAAAMAGE 144 (658)
T ss_pred HHHHHHHhCCe-EE-----------CCCCCEEeeEchhh-ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCC
Confidence 99999999995 66 36789999999887 9999999999999999999999999999999999999999
Q ss_pred eEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeeccCC
Q 012009 230 KVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 309 (473)
Q Consensus 230 ~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~D 309 (473)
++||+|||+|+|+|+|+|++||++|||||+|+++|+++|++||+|||+|+|+++||+++|||||||++|+||++||||+|
T Consensus 145 ~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D 224 (658)
T TIGR01342 145 AFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSD 224 (658)
T ss_pred cEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHHhhhhccchhhCceEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCC-CCcccccCCCCeecEEEEEECCCcceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHH
Q 012009 310 GTTFKYLEDKTSL-PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLA 388 (473)
Q Consensus 310 ~~t~~YL~~r~~~-~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~ 388 (473)
++|++||+.++++ +|..+.+|++|.|+++++||||+|||+||+|++|||+++++|++|++||+||||||||||+|||++
T Consensus 225 ~~t~~yl~~~~r~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~Pd~v~~v~e~~g~~id~v~IGSCTn~~~~Dl~~ 304 (658)
T TIGR01342 225 DITEAWLAAFDREDDFVDLLADADAEYADEIEIDLSDLEPLIAEPHMPDNVVPVREIAGIEVDQVMIGSCTNGAFEDLLP 304 (658)
T ss_pred HHHHHHHHhcCCchheeeccCCCCCcEEEEEEEEccceeeeeeCCCCCCCeeEhHHhCCceeeeEEEeCCCCCChHHHHH
Confidence 9999999998764 588899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccc--ceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCE
Q 012009 389 AAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMA 466 (473)
Q Consensus 389 AA~iL~~~G~kv~--V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~ 466 (473)
||+||+ |+|++ |+++|+|+|++|+.+++++ |++++|++|||.| .+||||+|+|++.+ +++|++
T Consensus 305 aA~il~--G~~v~~~v~~~v~PgS~~V~~~~~~~--------G~~~~l~~aGa~i-~~~gCg~CiG~~~~----~~~~~~ 369 (658)
T TIGR01342 305 AAKLLE--GREVHKDTEFAVAPGSKQALELIAQE--------GALAEFLAAGANF-LEAACGACIGIGFA----PASDGV 369 (658)
T ss_pred HHHHhC--CCccCCCccEEEeCCcHHHHHHHHHc--------CcHHHHHHcCCEE-eCCCccccccCCCC----CCCCcE
Confidence 999999 88887 9999999999999999986 4799999999999 69999999999543 789999
Q ss_pred EEeecCC
Q 012009 467 SLCLHDK 473 (473)
Q Consensus 467 ~iSTsn~ 473 (473)
||||+|.
T Consensus 370 ~vst~NR 376 (658)
T TIGR01342 370 SLRSFNR 376 (658)
T ss_pred EEEccCC
Confidence 9999994
No 13
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=3.9e-114 Score=911.96 Aligned_cols=380 Identities=40% Similarity=0.678 Sum_probs=319.5
Q ss_pred cHHHHHHHHhcCCCC-CCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcH-------
Q 012009 70 TLTEKIFSRASEKPQ-LSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDE------- 141 (473)
Q Consensus 70 Tl~EKIla~h~~~~~-v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~------- 141 (473)
||+||||++|++... ..+|++|+++||++|+||+|+|++++.|++ .| .+|++|+++++++||++|+.+.
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~-~g--~~v~~p~~v~~~~DH~vp~~~~~~~~~~~ 77 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRA-MG--EKVRDPDKVVLVIDHSVPADDIGSANLQI 77 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHH-HC--HCCHSTTSEEEE--SS--BSS-HHHHHHH
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHH-CC--CceecCCCceEEecCccccccccchhcch
Confidence 899999999998876 467899999999999999999999999976 56 4789999999999999999886
Q ss_pred ---HHHHHHHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCC
Q 012009 142 ---RANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIG 218 (473)
Q Consensus 142 ---~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG 218 (473)
++.+.++++|+|++++|+.+ |+. ++.|||||+++|+|+++||++|||+||||||+||||+||||||
T Consensus 78 ~~~~n~~~~~~l~~~~~~~gi~~-~~~----------~~~GI~Hqv~~E~g~~~PG~~vvg~DSHT~t~GalGa~a~GvG 146 (465)
T PF00330_consen 78 EDARNRERYRFLRWFAKEFGIKF-FDP----------GGPGICHQVLPEEGLVLPGMTVVGTDSHTCTYGALGAFATGVG 146 (465)
T ss_dssp HHHHCHHHHHHHHHHHHHCTTEE-EET----------TSSBSHHHHHHHHTT-STTEEEEESSTTGGGGGGGTSEEEE--
T ss_pred hhHHHHHHHHHHHHHHHHcCCce-ecC----------CCCCeeeeeehhhccccceeEEEeCCCCcchhhhceeEEeccC
Confidence 34556888999999999976 443 3459999999999999999999999999999999999999999
Q ss_pred hhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccc
Q 012009 219 NTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298 (473)
Q Consensus 219 ~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E 298 (473)
++|++++|+||++||+|||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|+||++||+++|||||||++|
T Consensus 147 ~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E 226 (465)
T PF00330_consen 147 STDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMDDRMTICNMAIE 226 (465)
T ss_dssp HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HHHHHHHHHCGGH
T ss_pred HHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeeccCChhHHHHhhhcCCCC-----------CcccccCCCCeecEEEEEECCCcceeeecCCCCCcccccccc--
Q 012009 299 AGGKNGVVPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC-- 365 (473)
Q Consensus 299 ~GA~~gif~~D~~t~~YL~~r~~~~-----------~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~-- 365 (473)
+||++||||||++|++||+.|++.+ |+.+++|+||.|+++++||||+|||+||+|++|+|+++++|+
T Consensus 227 ~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~~D~dA~Y~~~i~iDls~leP~va~P~~P~~~~~v~e~~~ 306 (465)
T PF00330_consen 227 MGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLKSDPDAEYDKVIEIDLSELEPQVAGPHSPDNVVPVSEVAP 306 (465)
T ss_dssp HTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS--TT---SEEEEEEGGG-SSEEE-SSSTTSEEEHHHHHH
T ss_pred cCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhccCCCccCeeEEEEEEcCccccccccCCCCccccccccccc
Confidence 9999999999999999999988743 578899999999999999999999999999999999987653
Q ss_pred -----------------------------ccceeceEEEecCCCCChHHHHHHHHHHHhc-CCcc--cceeEEecchHHH
Q 012009 366 -----------------------------KDVKIDRVYIGSCTGGKTEDFLAAAKVFLAS-GKKV--KVPTFLVPATQKV 413 (473)
Q Consensus 366 -----------------------------~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~-G~kv--~V~~~V~PaS~~V 413 (473)
++++||+||||||||||+|||++||+||+++ .+++ .|+++|+|+|++|
T Consensus 307 ~~~~~~~~v~~~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~il~~~~~~~v~~~v~~~v~PgS~~v 386 (465)
T PF00330_consen 307 DFASILDPVEREAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAAGILKGKAVLKVAPGVKTSVVPGSRQV 386 (465)
T ss_dssp HHHHHH----CCGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHHHHHHHHHCTTS-TSSEEEEE-SBHHH
T ss_pred ccccccccccccccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHHHHhhchhhccCcceeEEEEcCCCHHH
Confidence 2579999999999999999999999999954 1255 4999999999999
Q ss_pred HHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCC-CCEEEeecCC
Q 012009 414 WMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNE-PMASLCLHDK 473 (473)
Q Consensus 414 ~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~-ge~~iSTsn~ 473 (473)
+.++.++ |++++|++|||.| .+||||+|+|+++ ..+.+++ |++||||+|.
T Consensus 387 ~~~~~~~--------Gl~~~l~~aG~~v-~~~gC~~C~G~~~-~~~~~~~~~~~~vst~NR 437 (465)
T PF00330_consen 387 YEQLERE--------GLLEILEEAGFEV-RGPGCGPCIGMSG-LPDVLAPLGEVCVSTSNR 437 (465)
T ss_dssp HHHHHHT--------THHHHHHHTTEEE---SSSGGGGTSBS---CCHCCTTEEEEESSSS
T ss_pred HHHHHHc--------CCchhhhccceEE-ecCCccEEECCCC-CCcccccccceEEEecCC
Confidence 9999986 5899999999999 5999999999983 2345787 9999999995
No 14
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=1.7e-112 Score=887.57 Aligned_cols=365 Identities=24% Similarity=0.340 Sum_probs=341.9
Q ss_pred HHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHHHH
Q 012009 71 LTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDIL 150 (473)
Q Consensus 71 l~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~~~~~~~~~l 150 (473)
|+||||++|++++.|++||+|++++|++|+||.|+|++++.|++ +| .+||||+++++++||++|+.+.+++++|+++
T Consensus 1 ~~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~~-~~--~~v~d~~~~v~~~DH~~p~~~~~~a~~~~~~ 77 (436)
T cd01581 1 LAQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELKE-LA--CLGFSADLVMQSFCHTAAYPKPVDVKTHRTL 77 (436)
T ss_pred ChHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHHH-cC--CcccCCccEEEEcCCCCCCCCHHHHHHHHHH
Confidence 58999999999988999999999999999999999999999976 66 3899999999999999999999999999999
Q ss_pred HHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHccce
Q 012009 151 RDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK 230 (473)
Q Consensus 151 r~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~tg~ 230 (473)
|+|+++||++ ||+. ++|||||+++| +++||+++||+||||||+|| ||||+|++|++.+|+||+
T Consensus 78 r~fa~~~gi~-~~~~-----------g~GI~Hqv~~e--~~~PG~~ivGtDSHT~t~ga---~a~GvG~td~a~~latG~ 140 (436)
T cd01581 78 PDFISNRGGV-ALRP-----------GDGVIHSWLNR--MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGV 140 (436)
T ss_pred HHHHHHcCCc-EECC-----------CCCeeeeeehh--hccCCceEEeeccccCCCCc---eEEeecHHHHHHHHHhCe
Confidence 9999999995 7764 58999999987 58999999999999999986 899999999999999999
Q ss_pred EEeecCCeeeEEEEccCCCCCCHHHHHHH----HHHH--------hhccCCCceEEEEeccccccCChhhhhhhhhcccc
Q 012009 231 VLLKVPPTLRFVLDGEMPDYLLAKDLILQ----IIGE--------ISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298 (473)
Q Consensus 231 ~~~kvPetv~V~l~G~l~~gV~aKDliL~----ii~~--------l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E 298 (473)
+||+|||+|+|+|+|+|++||++|||||+ |+++ ++.+|++|++|||.| +++||+++|||||||++|
T Consensus 141 ~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~G--v~~Ls~~~R~Ti~NMa~E 218 (436)
T cd01581 141 MPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIEG--LPDLKVEQAFELTDASAE 218 (436)
T ss_pred eeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEECC--cccCCHhHHHHHHhhhhh
Confidence 99999999999999999999999999997 5777 777888999999964 999999999999999999
Q ss_pred cCceeeeccCChhH-HHHhhhc----------CC-----------------CCCcccccCCCCeecEEEEEECCCc-cee
Q 012009 299 AGGKNGVVPADGTT-FKYLEDK----------TS-----------------LPYEPVYSDEKASFLSEYRFDISKL-EPL 349 (473)
Q Consensus 299 ~GA~~gif~~D~~t-~~YL~~r----------~~-----------------~~~~~l~sD~dA~Y~~~i~iDLs~l-eP~ 349 (473)
+||++||||+|++| ++||+.| ++ ++++.+++|+||.|+++++||||+| ||+
T Consensus 219 ~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~da~Y~~~ieiDls~l~eP~ 298 (436)
T cd01581 219 RSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLLEPDADAEYAAVIEIDLDDIKEPI 298 (436)
T ss_pred hCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccccCCCCCceEEEEEEEhHhCCCCe
Confidence 99999999999988 8999987 22 1345688999999999999999999 999
Q ss_pred eecCCCCCccccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCccc-ceeEEecchHHHHHHhhcCCCCCCCCc
Q 012009 350 VAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK-VPTFLVPATQKVWMDVYTLPVPGSGGK 428 (473)
Q Consensus 350 VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~-V~~~V~PaS~~V~~~a~~~g~~g~~~~ 428 (473)
||+|++|||+++++|+.+++|||+||||||| |+|||++||+||| |++++ ||++|+|+|++||.+++++
T Consensus 299 VA~P~~pdn~~~v~e~~g~~id~~~IGSCTn-r~eDl~~AA~ilk--g~~~~~vr~~v~P~S~~V~~~~~~~-------- 367 (436)
T cd01581 299 LACPNDPDDVKLLSEVAGKKIDEVFIGSCMT-NIGHFRAAAKILR--GKEFKPTRLWVAPPTRMDWAILQEE-------- 367 (436)
T ss_pred ecCCCChhhceEhHHhcCCccceEEEecCCC-CHHHHHHHHHHHc--CCCCCCCCEEEECCCHHHHHHHHHc--------
Confidence 9999999999999999999999999999999 9999999999999 77776 9999999999999999986
Q ss_pred cHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 429 TCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 429 g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
|++++|++|||.+ .+||||+|+|+ +|++++||+||||+|.
T Consensus 368 G~~~~l~~aGa~v-~~pgCg~C~G~----~~~~~~gev~vsT~NR 407 (436)
T cd01581 368 GYYSIFGDAGART-EMPGCSLCMGN----QARVADGATVFSTSTR 407 (436)
T ss_pred ChHHHHHHcCCEE-CCCccccccCc----CCcCCCCCEEEEecCC
Confidence 4899999999999 69999999997 4679999999999994
No 15
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=4.6e-112 Score=925.43 Aligned_cols=376 Identities=31% Similarity=0.508 Sum_probs=357.8
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHH
Q 012009 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRN 146 (473)
Q Consensus 67 ~~~Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~~~~~~ 146 (473)
|||||+||||++|+++..|++|+.|++++|++++||.|+|+++..|++ +|. .++|+|..+ +++||++|..+.++++.
T Consensus 1 m~~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~-~G~-~~~~~p~~~-~~~DH~~~~~~~~~~~~ 77 (646)
T PRK07229 1 MGLTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEA-MGL-DRVKTELSV-QYVDHNLLQADFENADD 77 (646)
T ss_pred CCcCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHH-cCC-CcCCCCCeE-EECCCCCCCCChhhHHH
Confidence 689999999999999877999999999999999999999999999975 774 789999665 78999999999999999
Q ss_pred HHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHH
Q 012009 147 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL 226 (473)
Q Consensus 147 ~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l 226 (473)
++++|+|+++|||+ || |||+|||||++.|+ +++||+++|||||||||+||||+||||||++|++++|
T Consensus 78 ~~~l~~~a~~~gi~-~~-----------~~g~GI~Hqv~~E~-~a~PG~~ivGtDSHT~~~GalG~la~GvG~~d~~~~m 144 (646)
T PRK07229 78 HRFLQSVAAKYGIY-FS-----------KPGNGICHQVHLER-FAFPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAM 144 (646)
T ss_pred HHHHHHHHHHhCCe-EE-----------CCCCCCcceehhhh-ccCCCCEEEeCCCCcCcCCcccccEEccCHHHHHHHH
Confidence 99999999999994 56 46789999999887 9999999999999999999999999999999999999
Q ss_pred ccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeec
Q 012009 227 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV 306 (473)
Q Consensus 227 ~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif 306 (473)
+||++||++||+|+|+|+|+|++||++|||||+|+++|+++|++|++|||+|||+++||+++|||||||++|+||++|+|
T Consensus 145 ~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if 224 (646)
T PRK07229 145 AGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMGAELGATTSIF 224 (646)
T ss_pred hcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHHHHhhhhccccccCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHhhhcCCC-CCcccccCCCCeecEEEEEECCCcceeeecCCCCCccccccccccceeceEEEecCCCCChHH
Q 012009 307 PADGTTFKYLEDKTSL-PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTED 385 (473)
Q Consensus 307 ~~D~~t~~YL~~r~~~-~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eD 385 (473)
|+|++|++||+.+++. +|..+.+|++|.|+++++||||+|||+||+|++|||+++++|+.+.+||+||||||||||+||
T Consensus 225 ~~D~~t~~yL~~~gr~~~~~~l~~D~~a~Y~~~i~iDLs~leP~va~P~~Pd~~~pv~e~~~~~I~~a~IGSCTN~~~~D 304 (646)
T PRK07229 225 PSDERTREFLKAQGREDDWVELLADPDAEYDEVIEIDLSELEPLIAGPHSPDNVVPVSEVAGIKVDQVLIGSCTNSSYED 304 (646)
T ss_pred cCcHHHHHHHHhcCCcccceeccCCCCCCeeEEEEEEccceeeeeecCCCccceeEhHHhCCCeEEEEEEecCCCCChHH
Confidence 9999999999998764 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccc--ceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCC
Q 012009 386 FLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNE 463 (473)
Q Consensus 386 l~~AA~iL~~~G~kv~--V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ 463 (473)
|++||+||+ |+|++ |+++|+|+|++|+.+++++ |++++|++|||.+ .+||||+|+|+. +.+++
T Consensus 305 l~~aA~iL~--G~~v~~~v~~~v~PgS~~V~~~l~~~--------Gl~~~l~~aGa~i-~~~gCg~CiG~g----~~~~~ 369 (646)
T PRK07229 305 LMRAASILK--GKKVHPKVSLVINPGSRQVLEMLARD--------GALADLIAAGARI-LENACGPCIGMG----QAPAT 369 (646)
T ss_pred HHHHHHHhc--CCCCCCCeeEEEeCCCHHHHHHHHHC--------CcHHHHHHcCCEE-eCCCccccccCC----CCCCC
Confidence 999999999 88887 9999999999999999986 4899999999999 699999999973 24789
Q ss_pred CCEEEeecCC
Q 012009 464 PMASLCLHDK 473 (473)
Q Consensus 464 ge~~iSTsn~ 473 (473)
||+||||+|.
T Consensus 370 ~~~~vst~NR 379 (646)
T PRK07229 370 GNVSLRTFNR 379 (646)
T ss_pred CcEEEEccCC
Confidence 9999999994
No 16
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=1.2e-111 Score=928.58 Aligned_cols=380 Identities=28% Similarity=0.406 Sum_probs=351.3
Q ss_pred CCCcHHHHHHHHhcCCCC----------CCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCC
Q 012009 67 NAMTLTEKIFSRASEKPQ----------LSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYI 136 (473)
Q Consensus 67 ~~~Tl~EKIla~h~~~~~----------v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v 136 (473)
|||||+||||++|+++.. |++||+|++++|++|+||.|+|+++..|++ +|. .+||+|. .+++||++
T Consensus 18 ~~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~-~g~-~~v~~P~--~v~~DH~~ 93 (745)
T TIGR01340 18 RPLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMT-CGL-PQVAVPA--SIHCDHLI 93 (745)
T ss_pred CCcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHH-cCC-CCCCCCC--eEEeCCCC
Confidence 789999999999998763 689999999999999999999999999965 774 7999996 55699999
Q ss_pred CCC-----cHHH-----HHHHHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCcc
Q 012009 137 FTS-----DERA-----NRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCT 206 (473)
Q Consensus 137 ~~~-----~~~~-----~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t 206 (473)
|+. +.+. .++|+++|+|+++|||+ || |||+|||||++.|+ +++||+++||+||||||
T Consensus 94 ~~~~~~~~~~~~a~~~N~e~~~~lr~~a~~~gi~-~~-----------~~g~GI~Hqv~~E~-~a~PG~~ivGtDSHT~t 160 (745)
T TIGR01340 94 VGQKGGDKDLARAIATNKEVFDFLESAGKKYGIG-FW-----------KPGSGIIHQIVLEN-YAFPGLMMLGTDSHTPN 160 (745)
T ss_pred ccccCccccHHHHhHhHHHHHHHHHHHHHHCCCE-EE-----------CCCCCeeceEchhh-ccCCCCeEEccCCCccc
Confidence 876 4443 47799999999999994 66 45789999999886 99999999999999999
Q ss_pred CCcccceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCCh
Q 012009 207 AGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSM 286 (473)
Q Consensus 207 ~GalGala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~ 286 (473)
+||||+||||||++|++++|+++++||++||+|+|+|+|+|++||++|||||+|+++|+++|++|++|||+|+|+++||+
T Consensus 161 ~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~G~gv~~Ls~ 240 (745)
T TIGR01340 161 AGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYFGPGVESLSC 240 (745)
T ss_pred ccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEeCcccccCCH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccccCceeeeccCChhHHHHhhhcCCCC-----------CcccccCCCCeecEEEEEECCCcceeeecCCC
Q 012009 287 EERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHS 355 (473)
Q Consensus 287 d~R~Ti~NMa~E~GA~~gif~~D~~t~~YL~~r~~~~-----------~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~s 355 (473)
++|||||||++|+||++||||+|++|++||+.+++++ |..+++|++|.|+++++||||+|||+||+|++
T Consensus 241 ~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~vA~P~~ 320 (745)
T TIGR01340 241 TGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSFFKLKADEGAQYDELIEIDLSKLEPHINGPFT 320 (745)
T ss_pred HHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhcccccCCCCCCeEEEEEEEccceeEeecCCCC
Confidence 9999999999999999999999999999999988753 66788999999999999999999999999999
Q ss_pred CCcccccccccc--------ceeceEEEecCCCCChHHHHHHHHHHHh---cCCcccceeEEecchHHHHHHhhcCCCCC
Q 012009 356 PDNRALARECKD--------VKIDRVYIGSCTGGKTEDFLAAAKVFLA---SGKKVKVPTFLVPATQKVWMDVYTLPVPG 424 (473)
Q Consensus 356 Pdn~~~v~e~~~--------~~Id~a~IGSCTngr~eDl~~AA~iL~~---~G~kv~V~~~V~PaS~~V~~~a~~~g~~g 424 (473)
|||+++++|+.+ ++|||||||||||||+|||++||+|||+ ++++.+|+++|+|+|++|+++++++
T Consensus 321 Pdn~~~v~e~~~~~~~~g~~~~Id~a~IGSCTNgr~~Dl~~AA~ilk~a~~~~v~~~v~~~v~PgS~~V~~~l~~~---- 396 (745)
T TIGR01340 321 PDLSTPISKFKETVQKNGWPEKLSAGLIGSCTNSSYEDMSRCASIVKDAEQAGLKPKSPFYVTPGSEQIRATLERD---- 396 (745)
T ss_pred hhcccChHHhCchhhhcCCCceecEEEEEcCCCCCHHHHHHHHHHhhhhhhCCCCCCCCEEEECCCHHHHHHHHHC----
Confidence 999999999999 7999999999999999999999999994 4444459999999999999999986
Q ss_pred CCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCC--EEEeecCC
Q 012009 425 SGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPM--ASLCLHDK 473 (473)
Q Consensus 425 ~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge--~~iSTsn~ 473 (473)
|++++|++|||.| .+||||+|+|+++ ++|++++|| +||||+|.
T Consensus 397 ----Gl~~~l~~aGa~v-~~~gCg~CiG~~~-~~~~~~~ge~~~~vst~NR 441 (745)
T TIGR01340 397 ----GILQTFEKFGGIV-LANACGPCIGQWD-RKDDVKKGEPNTILTSYNR 441 (745)
T ss_pred ----CcHHHHHHcCCEE-eCCCccccccCCC-CcCccCCCCceEEEEecCC
Confidence 4799999999999 6999999999864 457899999 89999994
No 17
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=1.3e-109 Score=862.53 Aligned_cols=349 Identities=27% Similarity=0.391 Sum_probs=323.2
Q ss_pred EEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCC-----cHHHH-----HHHHHHHHHHHHcCCceeeccc
Q 012009 97 ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS-----DERAN-----RNVDILRDFCMEQNIKYFYDIK 166 (473)
Q Consensus 97 ~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~-----~~~~~-----~~~~~lr~fa~~~gi~~f~d~~ 166 (473)
++|+||.|+|.++..|++ +|. .+||+|+ ++++||++|++ +.+.+ ++++++|+|+++|||+ ||+
T Consensus 1 rv~~~D~tg~~a~~~f~~-~g~-~~v~~p~--~~~~DH~~~~~~~~~~~~~~a~~~n~~~~~~~r~~a~~~gi~-~~~-- 73 (412)
T cd01584 1 RVAMQDATAQMALLQFMS-SGL-PKVAVPS--TIHCDHLIEAQVGGEKDLKRAKDINKEVYDFLASAGAKYGIG-FWK-- 73 (412)
T ss_pred CeeEEecccHHHHHHHHH-hCC-CCCCCCC--eEEeCCCccccccCCCchhhhhhhhHHHHHHHHHHHHHcCCe-EEC--
Confidence 478999999999999975 774 7999999 55799999874 65444 5788999999999995 564
Q ss_pred ccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHccceEEeecCCeeeEEEEcc
Q 012009 167 DLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGE 246 (473)
Q Consensus 167 ~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~ 246 (473)
|++|||||+++|+ +++||+++||+||||||+||||+||||||+||++++|+++++||+|||+|+|+|+|+
T Consensus 74 ---------~g~GI~Hqv~~E~-~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vPe~i~v~l~G~ 143 (412)
T cd01584 74 ---------PGSGIIHQIVLEN-YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGK 143 (412)
T ss_pred ---------CCCCeeceEchhh-ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCCCEEEEEEEcc
Confidence 5689999999998 999999999999999999999999999999999999998888899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeeccCChhHHHHhhhcCCCC---
Q 012009 247 MPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP--- 323 (473)
Q Consensus 247 l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~D~~t~~YL~~r~~~~--- 323 (473)
|++||++|||||+|+++|+.+|++|++|||+|+|+++||+++|||||||++|+||++||||+|++|++||+.+++++
T Consensus 144 l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~~ 223 (412)
T cd01584 144 LSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYLKATGRAEIAD 223 (412)
T ss_pred cCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHHHhcCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred ----C--cccccCCCCeecEEEEEECCCcceeeecCCCCCcccccccccc--------ceeceEEEecCCCCChHHHHHH
Q 012009 324 ----Y--EPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD--------VKIDRVYIGSCTGGKTEDFLAA 389 (473)
Q Consensus 324 ----~--~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~--------~~Id~a~IGSCTngr~eDl~~A 389 (473)
| +.+++|+||.|+++++||||+|||+||+|++|+|+++++|+.+ ++||+||||||||||+|||++|
T Consensus 224 ~~~~y~~~~l~~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~~g~~~~Id~a~IGSCTNgr~~Dl~~A 303 (412)
T cd01584 224 LADEFKDDLLVADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEKNGWPLDLRVGLIGSCTNSSYEDMGRA 303 (412)
T ss_pred HHHHHHhcccCCCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhccCCceeEEEEEEeccCCCChHHHHHH
Confidence 5 7899999999999999999999999999999999999999998 7999999999999999999999
Q ss_pred HHHHHh---cCCcccceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCC-
Q 012009 390 AKVFLA---SGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPM- 465 (473)
Q Consensus 390 A~iL~~---~G~kv~V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge- 465 (473)
|+|||+ +|+|++||++|+|+|++||++|+++ |++++|.+|||.| .+||||+|+|++.+. .+++||
T Consensus 304 A~ilk~a~~~g~~v~vr~~v~PgS~~V~~~~~~~--------Gl~~~l~~aG~~i-~~pgCg~C~G~~~~~--~~~~g~~ 372 (412)
T cd01584 304 ASIAKQALAHGLKCKSIFTITPGSEQIRATIERD--------GLLQTFRDAGGIV-LANACGPCIGQWDRK--DIKKGEK 372 (412)
T ss_pred HHHHhhHHhCCCCCCCcEEEeCCCHHHHHHHHHC--------CcHHHHHHcCCEE-cCCcccccccCCCCc--ccCCCCc
Confidence 999984 7999999999999999999999986 4899999999999 699999999996541 355555
Q ss_pred -EEEeecCC
Q 012009 466 -ASLCLHDK 473 (473)
Q Consensus 466 -~~iSTsn~ 473 (473)
+||||+|.
T Consensus 373 ~~~vsT~NR 381 (412)
T cd01584 373 NTIVTSYNR 381 (412)
T ss_pred eEEEEecCC
Confidence 89999994
No 18
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=7.9e-109 Score=903.53 Aligned_cols=374 Identities=23% Similarity=0.282 Sum_probs=350.4
Q ss_pred CCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCC--cH
Q 012009 64 SVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS--DE 141 (473)
Q Consensus 64 ~~~~~~Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~--~~ 141 (473)
...+.+||+||||++|++. .+||++++++|++++||.|+|++++.|++ +|. .+| |+++++++||++|+. +.
T Consensus 30 ~~~~~~TlaeKIL~~h~~~---~~g~~v~~~vD~~~~~D~t~~~~~~~f~~-~G~-~~v--p~~~v~~~DH~~~~~~g~~ 102 (751)
T PRK11413 30 EEAKKGTIAWSILSSHNTS---GNMDKLKIKFDSLASHDITFVGIIQTAKA-SGM-ERF--PLPYVLTNCHNSLCAVGGT 102 (751)
T ss_pred HHHhhCCHHHHHHHHhhCC---CCCCEEEEEcceeeeehhhHHHHHHHHHH-cCC-CcC--CCCEEEECCCCCcCCCCCC
Confidence 4568899999999999985 48999999999999999999999999975 774 677 999999999999998 24
Q ss_pred HHHHHHHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhH
Q 012009 142 RANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 221 (473)
Q Consensus 142 ~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td 221 (473)
..+++|+++|+||++||+. || ||++|||||++.|. +++||+++||+||||+ +||||+||||+|++|
T Consensus 103 ~n~~~~~~~~~~a~k~Gi~-f~-----------~pg~GI~Hqv~~E~-~a~PG~~ivGtDSHT~-~GalG~la~GvGgtd 168 (751)
T PRK11413 103 INEDDHVFGLSAAQKYGGI-FV-----------PPHIAVIHQYMREM-MAGGGKMILGSDSHTR-YGALGTMAVGEGGGE 168 (751)
T ss_pred ccHHHHHHHHHHHHHcCCc-EE-----------CCCCCeECcCchhh-ccCCCcEEEeeCcCcc-cchhhhceeCCChHH
Confidence 4447999999999999995 66 46789999999887 9999999999999995 999999999999999
Q ss_pred HHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCC-CceEEEEeccccccCChhhhhhhhhcccccC
Q 012009 222 AGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGA-TYKSMEFVGTTVERLSMEERMTLCNMVVEAG 300 (473)
Q Consensus 222 ~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~-~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~G 300 (473)
++.+|+++++|+++||+|+|+|+|+|++||++|||||+|+++++++|+ +||+|||+|||+++||+++|||||||++|+|
T Consensus 169 ~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R~TI~NM~~E~G 248 (751)
T PRK11413 169 LVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNGVDVMTTETT 248 (751)
T ss_pred HHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHHhhhhhcccccC
Confidence 999999999999999999999999999999999999999999999999 7999999999999999999999999999999
Q ss_pred ceeeeccCChhHHHHhhhcCCC-CCcccccCCCCeecEEEEEECCCcceeeecCCCCCccccccccc-------------
Q 012009 301 GKNGVVPADGTTFKYLEDKTSL-PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK------------- 366 (473)
Q Consensus 301 A~~gif~~D~~t~~YL~~r~~~-~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~------------- 366 (473)
|++||||+|++|++||+.+++. +|+.+.+|++|.|+++++||||+|||+||+|++|||+.+++|+.
T Consensus 249 A~~~ifp~De~t~~yL~~~gr~~~~~~l~~D~~A~Yd~~ieiDLs~leP~VA~P~~Pdnv~~v~e~~~~~~~~~~~~~~~ 328 (751)
T PRK11413 249 CLSSIWQTDEEVHNWLALHGRGQDYCELNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDELNQNLTDILREVEIE 328 (751)
T ss_pred ceEEEecCcHHHHHHHHhCCChhhceeccCCCCCCeeEEEEEEcccceeeecCCCChhhCcChhhcccchhhhcchhhhh
Confidence 9999999999999999998864 78999999999999999999999999999999999999999984
Q ss_pred --------------------cceeceEEEecCCCCChHHHHHHHHHHHhcCCccc---ceeEEecchHHHHHHhhcCCCC
Q 012009 367 --------------------DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK---VPTFLVPATQKVWMDVYTLPVP 423 (473)
Q Consensus 367 --------------------~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~---V~~~V~PaS~~V~~~a~~~g~~ 423 (473)
+++|||||||||||||+|||++||+||+ |++++ |+++|+|+|++||.+++++|
T Consensus 329 ~~~~~~~~~~~~~~~ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~ILk--gk~v~~~~v~~~V~PgS~~V~~~l~~~G-- 404 (751)
T PRK11413 329 SERVAHGKAKLSLLDKIENGRLKVQQGIIAGCSGGNYENVIAAANALR--GQSCGNDTFSLSVYPSSQPVFMDLAKKG-- 404 (751)
T ss_pred hhhhhhhhccccccccccCCCcEeeeEEEecCCCCCHHHHHHHHHHhc--CcccCCCceeEEEECCCHHHHHHHHHcC--
Confidence 7899999999999999999999999999 88886 99999999999999999864
Q ss_pred CCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 424 GSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 424 g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
++++|++|||.| .+||||+|+|++. .+++||+||||||.
T Consensus 405 ------~~~~l~~AGa~i-~~~gCgpCiG~~~----~~~~ge~~isTsNR 443 (751)
T PRK11413 405 ------VVADLMGAGAII-RTAFCGPCFGAGD----TPANNGLSIRHTTR 443 (751)
T ss_pred ------cHHHHHHcCCEE-CCCchhhhhCcCC----cCCCCCEEEeecCC
Confidence 799999999999 6999999999852 38999999999994
No 19
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=1.1e-105 Score=820.27 Aligned_cols=321 Identities=29% Similarity=0.494 Sum_probs=305.8
Q ss_pred EEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCCceeecccccCCcccCCCC
Q 012009 98 LMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDY 177 (473)
Q Consensus 98 v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg 177 (473)
+|+||.|+|++++ |.+ +| ..+||||+|+++++||++|+.+.+.+++++++|+|||+|||+ ||+ ++
T Consensus 2 ~~~hd~t~p~~~~-~~~-~g-~~~v~~p~~~~~~~DH~vp~~~~~~~~~~~~lr~~ak~~gi~-~~~-----------~g 66 (363)
T cd01582 2 CMTHDNSWPVALK-FMS-IG-ATKIHNPDQIVMTLDHDVQNKSEKNLKKYKNIESFAKKHGID-FYP-----------AG 66 (363)
T ss_pred eeEEeCcHHHHHH-HHH-cC-CCccCCCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhCCe-EEC-----------CC
Confidence 6889999999999 644 67 479999999999999999999999999999999999999995 675 46
Q ss_pred CeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHH
Q 012009 178 KGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLI 257 (473)
Q Consensus 178 ~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDli 257 (473)
+|||||+++|+|+++||++|||+||||||+||||+||||||+||++.+|+||++|++|||+|+|+|+|+|++||++||||
T Consensus 67 ~GI~Hqv~~E~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vPe~i~v~l~G~l~~gV~aKDvi 146 (363)
T cd01582 67 RGIGHQIMIEEGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVI 146 (363)
T ss_pred CCEEEEeccccCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCCCEEEEEEecccCCCCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeeccCChhHHHHhhhcCCCCCcccccCCCCeecE
Q 012009 258 LQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLS 337 (473)
Q Consensus 258 L~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~D~~t~~YL~~r~~~~~~~l~sD~dA~Y~~ 337 (473)
|+|+++|+.+|++|++|||+|+++++||+++|||||||++|+||++||||+| ++
T Consensus 147 L~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D--------------------------~~ 200 (363)
T cd01582 147 VALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD--------------------------AK 200 (363)
T ss_pred HHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC--------------------------ce
Confidence 9999999999999999999999999999999999999999999999999999 67
Q ss_pred EEEEECCCcceeeecCCCCCcccccccc--ccceeceEEEecCCCCChHHHHHHHHHHHhcCCc-------cc--ceeEE
Q 012009 338 EYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKK-------VK--VPTFL 406 (473)
Q Consensus 338 ~i~iDLs~leP~VA~P~sPdn~~~v~e~--~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~k-------v~--V~~~V 406 (473)
+++||||+|||+||+|++|+|+.+++|+ ++++|||||||||||||+|||++||+||| |+| |+ ||++|
T Consensus 201 ~~~iDls~leP~va~P~~p~~~~~~~~~~~~~~~id~~~IGSCTngr~~Dl~~aA~il~--gk~~~~~~~~v~~~Vr~~v 278 (363)
T cd01582 201 HLILDLSTLSPYVSGPNSVKVSTPLKELEAQNIKINKAYLVSCTNSRASDIAAAADVVK--GKKEKNGKIPVAPGVEFYV 278 (363)
T ss_pred EEEEEcccceeeeeCCCCCCCcCCHHHhhhcCceEeEEEEEcCCCCChHHHHHHHHHHh--CccccccCcccCCCceEEE
Confidence 9999999999999999999999999998 58999999999999999999999999999 666 76 99999
Q ss_pred ecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 407 VPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 407 ~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
+|+|++||++|+++ |++++|++|||.| .+||||+|+|++ +|++++||+||||+|.
T Consensus 279 ~PgS~~V~~~a~~~--------Gl~~~l~~aGa~i-~~pgCg~C~G~~---~~~~~~ge~~vsT~NR 333 (363)
T cd01582 279 AAASSEVQAAAEKN--------GDWQTLLEAGATP-LPAGCGPCIGLG---QGLLEPGEVGISATNR 333 (363)
T ss_pred eCCCHHHHHHHHHc--------CcHHHHHHCCCEE-ECCCCeeccCCC---CCCCCCCCEEEEecCC
Confidence 99999999999986 4899999999999 699999999995 5579999999999994
No 20
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=1.2e-104 Score=871.78 Aligned_cols=385 Identities=23% Similarity=0.326 Sum_probs=358.2
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEE
Q 012009 51 APQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVI 130 (473)
Q Consensus 51 ~~~~~~r~~~~~~~~~~~~Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~ 130 (473)
.|..-+++|......++||||+||||++|+|++.|+||++|++++|.+++||.|+|++++.|++ +|. ++|+|+++++
T Consensus 353 ~~~~~f~~~~~~~~~~~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~~-lg~--~~~~~d~v~~ 429 (835)
T PRK09238 353 PPSDVFRKPKQPADSGKGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRDELKD-LAC--LGFSADLVMQ 429 (835)
T ss_pred CchhhcCCCCCCCcCCCcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHHHHHH-cCC--cccCCCcEEE
Confidence 5556789999988899999999999999999988999999999999999999999999999975 773 8999999999
Q ss_pred EecCCCCCCcHHHHHHHHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcc
Q 012009 131 IPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAF 210 (473)
Q Consensus 131 ~~DH~v~~~~~~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~Gal 210 (473)
++||++|..+.+.+++|+.+|+|++++|+. ||+ ||+|||||++. ++++||++++|+||||||+||
T Consensus 430 ~~dH~~p~~~~~~a~~~~~lr~Fa~~~Gi~-~~~-----------pG~GI~H~vl~--~~~~Pg~vivG~DSHT~t~ga- 494 (835)
T PRK09238 430 SFCHTAAYPKPVDVKTHHTLPDFIMNRGGV-SLR-----------PGDGVIHSWLN--RMLLPDTVGTGGDSHTRFPIG- 494 (835)
T ss_pred EccCCCCCCCHHHHHHHHHHHHHHHHcCCc-EeC-----------CCCCeeeeccc--ccccCCeEEEecccccCCCCc-
Confidence 999999999999999999999999999996 465 46899999985 699999999999999999997
Q ss_pred cceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHH----HHH--------hhccCCCceEEEEec
Q 012009 211 GQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI----IGE--------ISVAGATYKSMEFVG 278 (473)
Q Consensus 211 Gala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~i----i~~--------l~~~G~~~~~vEF~G 278 (473)
||||+|++|++++|+||++||+|||+|+|+|+|+|++||++|||||+| +++ ++.+|++|++|||.
T Consensus 495 --~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~lEf~- 571 (835)
T PRK09238 495 --ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIE- 571 (835)
T ss_pred --eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeEEEEc-
Confidence 889999999999999999999999999999999999999999999999 774 66778899999996
Q ss_pred cccccCChhhhhhhhhcccccCceeeecc-CChhHHHHhhhc----------CCC-----------------CCcccccC
Q 012009 279 TTVERLSMEERMTLCNMVVEAGGKNGVVP-ADGTTFKYLEDK----------TSL-----------------PYEPVYSD 330 (473)
Q Consensus 279 ~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~-~D~~t~~YL~~r----------~~~-----------------~~~~l~sD 330 (473)
|+++||+++|||||||++|+||++|+|| +|++|++||+.+ ++. +++.+++|
T Consensus 572 -Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~ll~aD 650 (835)
T PRK09238 572 -GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPELLEAD 650 (835)
T ss_pred -CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhcccccCC
Confidence 5999999999999999999999999999 789999999976 321 23457899
Q ss_pred CCCeecEEEEEECCCc-ceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCccc--ceeEEe
Q 012009 331 EKASFLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLV 407 (473)
Q Consensus 331 ~dA~Y~~~i~iDLs~l-eP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--V~~~V~ 407 (473)
+||.|+++++||||+| ||+||+|++|||+++++|+++.+||+||||||| ||++||++||+||| |++++ ||++|+
T Consensus 651 ~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~~Id~vfIGSCT-gr~~DlraAA~ILk--g~~v~~~vr~~V~ 727 (835)
T PRK09238 651 ADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGTKIDEVFIGSCM-TNIGHFRAAGKLLE--GKKGQLPTRLWVA 727 (835)
T ss_pred CCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCCccCeEEEEcCC-CCHHHHHHHHHHHc--CCccCCCCCEEEE
Confidence 9999999999999999 999999999999999999999999999999999 99999999999999 76664 999999
Q ss_pred cchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 408 PATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 408 PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
|+|++|+.++.++ |++++|.+|||.+ ..||||+|+|+ +|++++||+|+||||.
T Consensus 728 P~S~~v~~~l~~e--------G~~~~l~~AGa~v-~~pGCg~C~G~----~~~~~~ge~~vSTsNR 780 (835)
T PRK09238 728 PPTKMDADQLTEE--------GYYSIFGKAGARI-EMPGCSLCMGN----QARVADGATVFSTSTR 780 (835)
T ss_pred CCCHHHHHHHHHc--------CcHHHHHHcCCEE-CCCcchhhhCc----cCcCCCCCEEEeecCC
Confidence 9999999999986 4899999999999 58999999997 4679999999999994
No 21
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=1.1e-103 Score=861.97 Aligned_cols=385 Identities=23% Similarity=0.326 Sum_probs=354.1
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEE
Q 012009 51 APQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVI 130 (473)
Q Consensus 51 ~~~~~~r~~~~~~~~~~~~Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~ 130 (473)
.|..-++.|..+.+.+|||||+||||++|+|+..|+||++|++++|.+++||.|+|++++.|++ +| .++|||+++++
T Consensus 354 ~~~~~f~~~~~~~~~~mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~~-l~--~~vfdpd~v~~ 430 (844)
T TIGR00117 354 PHSDVFRQPKAPAESDKGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDELKE-LA--CLGFSADLVLQ 430 (844)
T ss_pred ChhhhccCCCCCCcCCCchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHHHH-hC--CceECCCcEEE
Confidence 4445677777777778999999999999999988999999999999999999999999999976 66 38999999999
Q ss_pred EecCCCCCCcHHHHHHHHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcc
Q 012009 131 IPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAF 210 (473)
Q Consensus 131 ~~DH~v~~~~~~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~Gal 210 (473)
++||++|.+++..+++|+.+|+|++++|+. ||+ ||+|||||+++| +++||++++|+||||||+ +
T Consensus 431 ~~DH~~p~~~~~~a~~~~~lr~Fa~~~Gi~-~~~-----------pG~GI~Hqvl~e--~~~PG~vivG~DSHT~t~--~ 494 (844)
T TIGR00117 431 SFCHTAAYPKPVDVNTHHTLPDFIMNRGGV-ALR-----------PGDGVIHSWLNR--MLLPDTVGTGGDSHTRFP--L 494 (844)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHHHcCCe-EEC-----------CCCceecccchh--hccCCeeEEecccccccc--c
Confidence 999999999999999999999999999996 575 468999999877 689999999999999997 5
Q ss_pred cceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHH----H--HHhhc------cCCCceEEEEec
Q 012009 211 GQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI----I--GEISV------AGATYKSMEFVG 278 (473)
Q Consensus 211 Gala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~i----i--~~l~~------~G~~~~~vEF~G 278 (473)
| ||||+|++|++++|+||++||+|||+|+|+|+|+|++||++|||||+| + +.|++ +|++|++|||.
T Consensus 495 G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~lEf~- 572 (844)
T TIGR00117 495 G-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRILEIE- 572 (844)
T ss_pred e-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEEEEC-
Confidence 7 999999999999999999999999999999999999999999999999 4 45544 67899999996
Q ss_pred cccccCChhhhhhhhhcccccCceeeeccCCh-hHHHHhhhc----------CCC-----------------CCcccccC
Q 012009 279 TTVERLSMEERMTLCNMVVEAGGKNGVVPADG-TTFKYLEDK----------TSL-----------------PYEPVYSD 330 (473)
Q Consensus 279 ~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~D~-~t~~YL~~r----------~~~-----------------~~~~l~sD 330 (473)
|+++||+++|||||||++|+||++|+|++|+ +|++||+.+ ++. ++..+++|
T Consensus 573 -Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~ll~aD 651 (844)
T TIGR00117 573 -GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEAD 651 (844)
T ss_pred -CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhcccccCC
Confidence 4999999999999999999999999999986 589999985 321 23457899
Q ss_pred CCCeecEEEEEECCCc-ceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCccc-ceeEEec
Q 012009 331 EKASFLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK-VPTFLVP 408 (473)
Q Consensus 331 ~dA~Y~~~i~iDLs~l-eP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~-V~~~V~P 408 (473)
+||.|+++++||||+| ||+||+|++|||+++++|+.+.+||+||||||| +|++||++||+||| |+++. ||++|+|
T Consensus 652 ~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~~IdqVfIGSCT-~n~~DlraAA~ILk--g~~v~~vrl~V~P 728 (844)
T TIGR00117 652 ADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGDKIDEVFIGSCM-TNIGHFRAAGKILD--AAGQLPTRLWVAP 728 (844)
T ss_pred CCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCcccceEEEEcCC-CCHHHHHHHHHHHc--CCCcCCCCEEEEC
Confidence 9999999999999999 999999999999999999999999999999999 89999999999999 76776 9999999
Q ss_pred chHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 409 ATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 409 aS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
+|++|+.++.++ |++++|.+|||.+ ..||||+|+|+ +|++++|++|+||||.
T Consensus 729 ~S~~V~~~l~~e--------G~~~~f~~AGa~i-~~pGCg~C~Gn----~~~v~~Ge~vvSTsNR 780 (844)
T TIGR00117 729 PTRMDEQQLTEE--------GYYSIFGAAGART-EIPGCSLCMGN----QARVADGATVFSTSTR 780 (844)
T ss_pred CCHHHHHHHHHc--------CcHHHHHHcCCEE-CCCccccccCC----CCcCCCCCEEEeccCC
Confidence 999999999986 4899999999999 58999999997 4679999999999994
No 22
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=1.2e-101 Score=844.82 Aligned_cols=385 Identities=22% Similarity=0.295 Sum_probs=349.9
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHhcCC-CCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEE
Q 012009 51 APQQSERRPATTGSVKNAMTLTEKIFSRASEK-PQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIV 129 (473)
Q Consensus 51 ~~~~~~r~~~~~~~~~~~~Tl~EKIla~h~~~-~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~ 129 (473)
.|..-+|.|......+|||||+||||++|+|+ ..|+||++|++++|.+++||.|+|++++.|++ +|. .+|||++++
T Consensus 426 ~~~~~f~~p~~~~~~~mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~efke-l~~--~~~dpdkv~ 502 (938)
T PLN00094 426 DASDVFRMPSVPESKPKGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDELKD-LAC--LGFSADLVM 502 (938)
T ss_pred CchhhccCCCCCCcCCCchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHHHH-hcc--cccCcccEE
Confidence 44557888988888899999999999999998 46999999999999999999999999999975 653 588999999
Q ss_pred EEecCCCCCCcHHHHHHHHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCc
Q 012009 130 IIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGA 209 (473)
Q Consensus 130 ~~~DH~v~~~~~~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~Ga 209 (473)
+++||++|..+....++|+.+|+|++++|+. ||+. |+|||||+++| +++||++++|+|||||+.++
T Consensus 503 ~~fDH~ap~p~~~~~~~~~~lr~Fa~~~Gi~-~~~~-----------G~GI~HqvL~e--~~lPG~vivGgDSHT~fa~G 568 (938)
T PLN00094 503 QSFCHTAAYPKPVDVVTHHTLPDFIRNRGGV-SLRP-----------GDGVIHSWLNR--MLLPDTVGTGGDSHTRFPIG 568 (938)
T ss_pred EEccCCCCCCCHHHHHHHHHHHHHHHHcCCE-EECC-----------CCceecccccc--cccCCeEEEeecCCCCCccc
Confidence 9999999999889899999999999999996 6764 58999999865 99999999999999997776
Q ss_pred ccceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHH------HHhhc------cCCCceEEEEe
Q 012009 210 FGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQII------GEISV------AGATYKSMEFV 277 (473)
Q Consensus 210 lGala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii------~~l~~------~G~~~~~vEF~ 277 (473)
+ +||.|++|+|++|+||++||+|||+|+|+|+|+|++||++|||||+|+ +.|++ ++++|++|||
T Consensus 569 I---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~GkilEf- 644 (938)
T PLN00094 569 I---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGRILEI- 644 (938)
T ss_pred c---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeEEEEe-
Confidence 4 568899999999999999999999999999999999999999999996 55544 3458899999
Q ss_pred ccccccCChhhhhhhhhcccccCceeeeccCC-hhHHHHhhh----------cCC-----------------CCCccccc
Q 012009 278 GTTVERLSMEERMTLCNMVVEAGGKNGVVPAD-GTTFKYLED----------KTS-----------------LPYEPVYS 329 (473)
Q Consensus 278 G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~D-~~t~~YL~~----------r~~-----------------~~~~~l~s 329 (473)
+|+++||+++|||||||++|+||++|+|++| ++|++||+. +++ ++++.+.+
T Consensus 645 -~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ll~a 723 (938)
T PLN00094 645 -EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADPELLEA 723 (938)
T ss_pred -CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhcccccC
Confidence 6699999999999999999999999999999 578999986 221 12356889
Q ss_pred CCCCeecEEEEEECCCc-ceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCccc--ceeEE
Q 012009 330 DEKASFLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFL 406 (473)
Q Consensus 330 D~dA~Y~~~i~iDLs~l-eP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--V~~~V 406 (473)
|+||.|+++|+||||+| ||+||+|++|||+++++|+.+++||+||||||| +|++||++||+||+ |++++ ||++|
T Consensus 724 D~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g~kIDqVFIGSCT-grieDlraAA~ILk--Grkv~~~Vrl~V 800 (938)
T PLN00094 724 DPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTGDKIDEVFIGSCM-TNIGHFRAAGKLLN--DNLSQLPTRLWV 800 (938)
T ss_pred CCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcCCccCeEEEEeCC-CCHHHHHHHHHHHc--CCCCCCCCcEEE
Confidence 99999999999999999 999999999999999999999999999999999 79999999999999 66665 99999
Q ss_pred ecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 407 VPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 407 ~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
+|+|++||.++.++ |++++|.+|||.+ ..||||+|+|+ +|++++||+||||||.
T Consensus 801 ~P~Sr~V~~ql~~e--------G~~~if~~AGA~i-~~PGCg~CmG~----~g~l~~Gev~vSTSNR 854 (938)
T PLN00094 801 APPTKMDEAQLKAE--------GYYSTFGTVGART-EMPGCSLCMGN----QARVAEKSTVVSTSTR 854 (938)
T ss_pred eCCCHHHHHHHHHc--------CcHHHHHhCCCEE-cCCccccccCC----CCcCCCCCeEEeecCC
Confidence 99999999999986 4799999999999 58999999997 4679999999999994
No 23
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=5.1e-101 Score=797.55 Aligned_cols=348 Identities=32% Similarity=0.547 Sum_probs=332.3
Q ss_pred EEEEccCChhhHHHHHHHHhCCCC-cccCCccEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCCceeecccccCCcccCC
Q 012009 97 ILMTHDVCGPGSFGIFKKEFGENA-KVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANP 175 (473)
Q Consensus 97 ~v~~hD~tgp~~~~~~~~~~G~~~-~V~~P~~i~~~~DH~v~~~~~~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~P 175 (473)
++|+||.|+|++++.|++ +|. . +||||+++++++||++|+.+.+++++++++|+|++++||+ ||+
T Consensus 1 ~v~~hD~tgp~a~~~~~~-~~~-~~~v~~p~~v~~~~DH~~p~~~~~~~~~~~~lr~f~~~~gi~-~~~----------- 66 (389)
T cd01351 1 RVMLQDATGPMAMKAFEI-LAA-LGKVADPSQIACVHDHAVQLEKPVNNEGHKFLSFFAALQGIA-FYR----------- 66 (389)
T ss_pred CEEEEecchHHHHHHHHH-cCC-CCCCCCcccEEEEECCCCCCCChhHHHHHHHHHHHHHHcCCc-EEC-----------
Confidence 478999999999999975 664 5 8999999999999999999999999999999999999995 665
Q ss_pred CCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHH
Q 012009 176 DYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKD 255 (473)
Q Consensus 176 pg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKD 255 (473)
+++|||||++.|+ +++||++++|+||||||+||||+||||+|++|++++|+||++|+++|++++|+|+|+|+++|++||
T Consensus 67 ~g~Gi~H~~~~E~-~~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP~~~~v~l~G~l~~~V~~kD 145 (389)
T cd01351 67 PGVGIIHQIMVEN-LALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKD 145 (389)
T ss_pred CCCCeECcccccc-cCCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCCcEEEEEEecccCCCceeeH
Confidence 4689999999887 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeeccCChhHHHHhhhcCCC--------CCccc
Q 012009 256 LILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSL--------PYEPV 327 (473)
Q Consensus 256 liL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~D~~t~~YL~~r~~~--------~~~~l 327 (473)
|+|+|++.|+.+|++|+++||.|+++++||+|+|+|||||++|+||++|+||+|++|++||+.|++. .|+.+
T Consensus 146 l~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl~~~~~~~~~~~~~~~~~~l 225 (389)
T cd01351 146 VVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWLEATGRPLLKNLWLAFPEEL 225 (389)
T ss_pred HHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHHHhcCCchhhHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999887 57789
Q ss_pred ccCCCCeecEEEEEECCCcceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCccc--ceeE
Q 012009 328 YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTF 405 (473)
Q Consensus 328 ~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--V~~~ 405 (473)
.+|+||.|+++++||||+|||+|++|++|||+.+++|+.+.+||+||||||||+|+|||++||+||| |+|++ |+++
T Consensus 226 ~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~~~Id~v~IGSCtn~~~~dl~~aA~ilk--gk~v~~~v~~~ 303 (389)
T cd01351 226 LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEGTKIDQVLIGSCTNNRYSDMLAAAKLLK--GAKVAPGVRLI 303 (389)
T ss_pred CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccCCceeEEEEecCCCCCHHHHHHHHHHHc--CCcCCCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 88887 9999
Q ss_pred EecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 406 LVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 406 V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
|+|+|++||.++.++ |++++|++||+.+ .+|||++|+|++ +|++++||+|+||+|.
T Consensus 304 v~P~S~~v~~~a~~~--------Gl~~~l~~aG~~i-~~~gC~~C~G~~---~~~~~~g~~~vst~nR 359 (389)
T cd01351 304 VTPGSRMVYATLSRE--------GYYEILVDSGARI-LPPGCGPCMGNG---ARLVADGEVGVSSGNR 359 (389)
T ss_pred EECCCHHHHHHHHHc--------ChHHHHHHCCCEE-eCCCCcccCCCC---CCcCCCCcEEEEeecC
Confidence 999999999999986 5899999999999 699999999994 5679999999999994
No 24
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=2.3e-99 Score=835.22 Aligned_cols=378 Identities=22% Similarity=0.339 Sum_probs=331.3
Q ss_pred CCCCCeEEEeeeEEEEccCChhhHHHHHHH------HhCCCCcccCCc-cEEEEecCCCCCCc-----HHHHHHHHHHHH
Q 012009 85 LSPGDNVWVNVDILMTHDVCGPGSFGIFKK------EFGENAKVWDRE-KIVIIPDHYIFTSD-----ERANRNVDILRD 152 (473)
Q Consensus 85 v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~------~~G~~~~V~~P~-~i~~~~DH~v~~~~-----~~~~~~~~~lr~ 152 (473)
-++|..|.++||++++||+||.+++-.|.. ++|.++..++|. ++.+++||++++.. ....+..+.+++
T Consensus 74 ~~~~~ei~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~r 153 (888)
T PRK09277 74 AKPDREIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFER 153 (888)
T ss_pred CCCCceeeeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHh
Confidence 357889999999999999999666554432 257677788998 69999999998763 222233445555
Q ss_pred HHHHcCCceeecccccCCcccCCCCCeeEeeeecc----------cc--eeeCCceEEcCCCCCccCCcccceecCCChh
Q 012009 153 FCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ----------EG--HCRPGEVLLGTDSHTCTAGAFGQFATGIGNT 220 (473)
Q Consensus 153 fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~e----------eg--~~~PG~~ivGtDSHT~t~GalGala~GvG~t 220 (473)
.+++|++-+ |.++.+.||+++|||+|||||+..| .| +++| +++|||||||||+||||+||||||++
T Consensus 154 N~er~~fLk-w~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~P-dtlVGtDSHT~t~GalG~la~GVGg~ 231 (888)
T PRK09277 154 NEERYQFLK-WGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYP-DTLVGTDSHTTMINGLGVLGWGVGGI 231 (888)
T ss_pred CHHHHhHHH-HHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeecc-ceEEecCCCCCCCCcccccEEccCHH
Confidence 666665432 7788889999999999999999999 77 8999 59999999999999999999999999
Q ss_pred HHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccC
Q 012009 221 DAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAG 300 (473)
Q Consensus 221 d~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~G 300 (473)
|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+++|++||+|||+|+|+++||+++|||||||++|+|
T Consensus 232 Eaeaam~g~~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~G 311 (888)
T PRK09277 232 EAEAAMLGQPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYG 311 (888)
T ss_pred HHHHHHhcCcEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCChhHHHHhhhcCCCC--------Cc----ccc-cCCCCeecEEEEEECCCcceeeecCCCCCcccccccccc
Q 012009 301 GKNGVVPADGTTFKYLEDKTSLP--------YE----PVY-SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD 367 (473)
Q Consensus 301 A~~gif~~D~~t~~YL~~r~~~~--------~~----~l~-sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~ 367 (473)
|++|+||+|++|++||+.+++.+ |. .++ +|++|.|+++++||||+|||+||+|++|+|+.+++|+.+
T Consensus 312 At~g~fp~De~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~~~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~ 391 (888)
T PRK09277 312 ATCGFFPIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWRDPLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKE 391 (888)
T ss_pred ceEEEecCChhHHHHHHhcCCChHHHHHHHHHHHHHhhhccCCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCc
Confidence 99999999999999999988754 32 233 599999999999999999999999999999999998876
Q ss_pred c----------------------------eeceEEEecCCCCChHHHHHHHHHHHh----cCCccc--ceeEEecchHHH
Q 012009 368 V----------------------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--VPTFLVPATQKV 413 (473)
Q Consensus 368 ~----------------------------~Id~a~IGSCTngr~eDl~~AA~iL~~----~G~kv~--V~~~V~PaS~~V 413 (473)
. +|++||||||||+|+||+++||+||++ +|+|++ |+++|+|+|++|
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V 471 (888)
T PRK09277 392 AFAKSAELGVQGFGLDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVV 471 (888)
T ss_pred chhhhchhhhhhhhhhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeCCCHHH
Confidence 5 678999999999999999999999964 599998 999999999999
Q ss_pred HHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccc----cCCCCC---EEEeecCC
Q 012009 414 WMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RMNEPM---ASLCLHDK 473 (473)
Q Consensus 414 ~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g----~l~~ge---~~iSTsn~ 473 (473)
+.+++++ |++++|++|||.| .+||||+|+|++++... .+.++| +||||+|.
T Consensus 472 ~~~l~~~--------Gl~~~l~~aGf~i-~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NR 529 (888)
T PRK09277 472 TDYLEKA--------GLLPYLEALGFNL-VGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNR 529 (888)
T ss_pred HHHHHHC--------ChHHHHHHcCCEE-eCCCccccccCCCCCCchhhhhcccCCceeEEEeccCC
Confidence 9999986 4899999999999 59999999999765311 112456 57999994
No 25
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=1.2e-98 Score=830.98 Aligned_cols=377 Identities=22% Similarity=0.316 Sum_probs=328.3
Q ss_pred CCCCeEEEeeeEEEEccCChhhHHHHHH------HHhCCCCcccCCc-cEEEEecCCCCCCc-----HHHHHHHHHHHHH
Q 012009 86 SPGDNVWVNVDILMTHDVCGPGSFGIFK------KEFGENAKVWDRE-KIVIIPDHYIFTSD-----ERANRNVDILRDF 153 (473)
Q Consensus 86 ~~Gd~v~v~vD~v~~hD~tgp~~~~~~~------~~~G~~~~V~~P~-~i~~~~DH~v~~~~-----~~~~~~~~~lr~f 153 (473)
+.+..|.++||++++||+|+++++..|. ++.|.+.+..+|. ++.+++||++++.. .-..+..+.+++.
T Consensus 74 ~~~~ei~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN 153 (889)
T PRK12881 74 KSDDEIPFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRN 153 (889)
T ss_pred CCCceeccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhh
Confidence 4567899999999999999988887662 2357655555665 57799999997753 2223334555666
Q ss_pred HHHcCCceeecccccCCcccCCCCCeeEeeeeccc-------------ceeeCCceEEcCCCCCccCCcccceecCCChh
Q 012009 154 CMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE-------------GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNT 220 (473)
Q Consensus 154 a~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~ee-------------g~~~PG~~ivGtDSHT~t~GalGala~GvG~t 220 (473)
+++|++-+ |.++.+.||+++||++|||||+..|. |+++| +++|||||||||+||||+||||||++
T Consensus 154 ~ery~fLk-w~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~P-dtlVGtDSHT~~~galG~lg~GVGg~ 231 (889)
T PRK12881 154 AERYQFLK-WGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYP-DTLVGTDSHTTMINGIGVLGWGVGGI 231 (889)
T ss_pred HHHhChHH-HHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecC-CeEEecCCCCCCCccccceEecccHH
Confidence 66665433 78888999999999999999999885 79999 59999999999999999999999999
Q ss_pred HHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccC
Q 012009 221 DAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAG 300 (473)
Q Consensus 221 d~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~G 300 (473)
|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+++|++||+|||+|+|+++||+++|||||||++|+|
T Consensus 232 Eaeaamlgq~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~G 311 (889)
T PRK12881 232 EAEAVMLGQPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYG 311 (889)
T ss_pred HHHHHHhCCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCChhHHHHhhhcCCCC--------Cc----cc-ccCCCCeecEEEEEECCCcceeeecCCCCCccccccccc-
Q 012009 301 GKNGVVPADGTTFKYLEDKTSLP--------YE----PV-YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK- 366 (473)
Q Consensus 301 A~~gif~~D~~t~~YL~~r~~~~--------~~----~l-~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~- 366 (473)
|++||||+|++|++||+.+++.+ |. .+ .+|++|.|+++++||||+|||+||+|++|+|+++++++.
T Consensus 312 At~g~fp~De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~ 391 (889)
T PRK12881 312 ATMGFFPVDEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGDPKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKS 391 (889)
T ss_pred ceEEEecCChhHHHHHHhcccchHHHHHHHHHHHHHHhhcCcCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCc
Confidence 99999999999999999987754 21 11 379999999999999999999999999999999998876
Q ss_pred -------------------------c---ceeceEEEecCCCCChHHHHHHHHHHHh----cCCccc--ceeEEecchHH
Q 012009 367 -------------------------D---VKIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--VPTFLVPATQK 412 (473)
Q Consensus 367 -------------------------~---~~Id~a~IGSCTngr~eDl~~AA~iL~~----~G~kv~--V~~~V~PaS~~ 412 (473)
+ .+||+||||||||+|+|||++||+||++ +|+|++ |+++|+|+|++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~ 471 (889)
T PRK12881 392 AFSDLFSKPVAENGFAKKAQTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKV 471 (889)
T ss_pred CHHHHhhhHHHhhhhhcccccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEeCCCHH
Confidence 1 2799999999999999999999999964 599998 99999999999
Q ss_pred HHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccc----cCCCCC---EEEeecCC
Q 012009 413 VWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RMNEPM---ASLCLHDK 473 (473)
Q Consensus 413 V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g----~l~~ge---~~iSTsn~ 473 (473)
|+.++.++| ++++|+++||.| .+||||+|+|++++... -+.+|| +|+||+|.
T Consensus 472 V~~~l~~~G--------l~~~l~~aGf~i-~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NR 530 (889)
T PRK12881 472 VTEYLERAG--------LLPYLEKLGFGI-VGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNR 530 (889)
T ss_pred HHHHHHHcC--------cHHHHHHcCCEE-eCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCC
Confidence 999999864 799999999999 69999999999754210 012354 88999994
No 26
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=1.2e-98 Score=828.55 Aligned_cols=378 Identities=23% Similarity=0.316 Sum_probs=330.2
Q ss_pred CCCCCCCCeEEEeeeEEEEccCChhhHHHHHH------HHhCCCCcccCCc-cEEEEecCCCCCCc-----HHHHHHHHH
Q 012009 82 KPQLSPGDNVWVNVDILMTHDVCGPGSFGIFK------KEFGENAKVWDRE-KIVIIPDHYIFTSD-----ERANRNVDI 149 (473)
Q Consensus 82 ~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~------~~~G~~~~V~~P~-~i~~~~DH~v~~~~-----~~~~~~~~~ 149 (473)
++....+..|.++||++++||+||.+++-.|. +++|.++...+|. ++.+++||++++.. ....+..+.
T Consensus 53 ~~~~~~~~ei~f~p~RvllQD~TGvpa~vdlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e 132 (876)
T TIGR01341 53 KIGEVADTEIAFKPARVVMQDFTGVPAVVDLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELE 132 (876)
T ss_pred cccCCCCceeccCchhheeccccCchHHHHHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHH
Confidence 33334567899999999999999944443332 2357777778887 88999999997752 223333444
Q ss_pred HHHHHHHcCCceeecccccCCcccCCCCCeeEeeeeccc-------------ceeeCCceEEcCCCCCccCCcccceecC
Q 012009 150 LRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE-------------GHCRPGEVLLGTDSHTCTAGAFGQFATG 216 (473)
Q Consensus 150 lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~ee-------------g~~~PG~~ivGtDSHT~t~GalGala~G 216 (473)
+++.+++|++-+ |.++.++||+++||++|||||+..|. |+++| +++|||||||||+||||+||||
T Consensus 133 ~~rN~ery~fLk-w~~~~f~~~~v~ppg~GI~HqV~lE~la~~v~~~~~~g~g~a~P-dtlVGtDSHT~t~GalG~la~G 210 (876)
T TIGR01341 133 FERNLERYQFLK-WAQKAFRNFRVVPPGTGIIHQVNLEYLATVVFKAEVDGELTAYP-DSLVGTDSHTTMINGLGVLGWG 210 (876)
T ss_pred HHhCHHHHhHHH-HHHHHcccCCCCCCCCCeeceechhhcccceeecccCCcceecc-ceeeecCCCCCCCCeecceEec
Confidence 555566655422 77888999999999999999998885 69999 5899999999999999999999
Q ss_pred CChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcc
Q 012009 217 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMV 296 (473)
Q Consensus 217 vG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa 296 (473)
||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+++|++||+|||+|+|+++||+++|||||||+
T Consensus 211 VGg~Eaeavmlgq~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa 290 (876)
T TIGR01341 211 VGGIEAEAAMLGQPYYMNVPEVIGVKLTGKLQEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMA 290 (876)
T ss_pred ccHHHHHHHHhCCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceeeeccCChhHHHHhhhcCCCC--------C----cccccC-CCCeecEEEEEECCCcceeeecCCCCCcccccc
Q 012009 297 VEAGGKNGVVPADGTTFKYLEDKTSLP--------Y----EPVYSD-EKASFLSEYRFDISKLEPLVAKPHSPDNRALAR 363 (473)
Q Consensus 297 ~E~GA~~gif~~D~~t~~YL~~r~~~~--------~----~~l~sD-~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~ 363 (473)
+|+||++||||+|++|++||+.+++.+ | ..+++| ++|.|+++++||||+|||+||+|++|+|+.+++
T Consensus 291 ~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~l~~~y~k~~~l~~~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~ 370 (876)
T TIGR01341 291 PEYGATCGFFPIDDVTLQYLRLTGRDGDHVELVEKYARAQGLFYDDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLR 370 (876)
T ss_pred hhhCceEEEEcCChhHHHHHHhCCCCHHHHHHHHHHHHhcccccCCCCCCceeEEEEEEcccceeeccCCCChhhccChh
Confidence 999999999999999999999988754 2 245677 899999999999999999999999999999998
Q ss_pred ccccc-----------------------------------eeceEEEecCCCCChHHHHHHHHHHHh----cCCccc--c
Q 012009 364 ECKDV-----------------------------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--V 402 (473)
Q Consensus 364 e~~~~-----------------------------------~Id~a~IGSCTngr~eDl~~AA~iL~~----~G~kv~--V 402 (473)
|+.+. +||+||||||||||+||+++||+||++ +|+|++ |
T Consensus 371 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~V 450 (876)
T TIGR01341 371 EVKAKFSKELEKNGGDKGFTLRKEPLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYV 450 (876)
T ss_pred hcchhhhhHhhhhcccccccchhhhhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCc
Confidence 87654 599999999999999999999999964 599998 9
Q ss_pred eeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCC----------CEEEeecC
Q 012009 403 PTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEP----------MASLCLHD 472 (473)
Q Consensus 403 ~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~g----------e~~iSTsn 472 (473)
+++|+|+|++|+.++.++ |++++|++|||.| .+||||+|+|++++ ++.++ ++|+||+|
T Consensus 451 k~~v~PGS~~V~~~l~~~--------Gl~~~L~~aGf~i-~~~GCg~CiG~~g~---l~~~~e~ai~~~~l~~~~VsS~N 518 (876)
T TIGR01341 451 KTSLAPGSKVVTDYLAES--------GLLPYLEELGFNL-VGYGCTTCIGNSGP---LPKYVEEAIKKNDLEVYAVLSGN 518 (876)
T ss_pred cEEEeCCCHHHHHHHHHC--------CcHHHHHHcCCEE-ecCCccccccCCCC---CCcchhcccccCCceEEEEeccC
Confidence 999999999999999986 4899999999999 59999999999755 24444 39999999
Q ss_pred C
Q 012009 473 K 473 (473)
Q Consensus 473 ~ 473 (473)
.
T Consensus 519 R 519 (876)
T TIGR01341 519 R 519 (876)
T ss_pred C
Confidence 4
No 27
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=4e-98 Score=826.04 Aligned_cols=382 Identities=23% Similarity=0.313 Sum_probs=332.1
Q ss_pred CCCCCCCCCeEEEeeeEEEEccCCh-hhHHHH-----HHHHhCCCCcccCCc-cEEEEecCCCCCCc-----HHHHHHHH
Q 012009 81 EKPQLSPGDNVWVNVDILMTHDVCG-PGSFGI-----FKKEFGENAKVWDRE-KIVIIPDHYIFTSD-----ERANRNVD 148 (473)
Q Consensus 81 ~~~~v~~Gd~v~v~vD~v~~hD~tg-p~~~~~-----~~~~~G~~~~V~~P~-~i~~~~DH~v~~~~-----~~~~~~~~ 148 (473)
+.+...+|..|.++||++++||+|| |.++++ +-+++|.++...+|. ++.+++||++++.. ....+...
T Consensus 76 w~~~~~~~~ei~~~p~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~ 155 (898)
T PTZ00092 76 WEENSKKQIEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEI 155 (898)
T ss_pred CcccCCCCceeeeccceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHH
Confidence 3333457889999999999999999 544441 112357666677887 88999999998763 22333345
Q ss_pred HHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecc---------cceeeCCceEEcCCCCCccCCcccceecCCCh
Q 012009 149 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ---------EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 219 (473)
Q Consensus 149 ~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~e---------eg~~~PG~~ivGtDSHT~t~GalGala~GvG~ 219 (473)
.+++.+++|++.+ |.++.+.||+++|||+|||||++.| .|++.|| ++|||||||||+||||+||||||+
T Consensus 156 e~~rN~ery~fl~-~~~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd-~lvGtDSHT~~~GalG~la~GVGg 233 (898)
T PTZ00092 156 EFERNLERFEFLK-WGSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPD-SVVGTDSHTTMINGLGVLGWGVGG 233 (898)
T ss_pred HHHhhHHHhChHH-hhhhhhcCCcccCCCCceeceechhhhccccccccCcccCC-eEEecCCCCCCCCcccccEecccH
Confidence 5667777877654 8888999999999999999999866 7899994 699999999999999999999999
Q ss_pred hHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhccccc
Q 012009 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEA 299 (473)
Q Consensus 220 td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~ 299 (473)
+|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+++|++||+|||+|+|+++||+++|||||||++|+
T Consensus 234 ~Eaeaamlgq~~~~~vPevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~ 313 (898)
T PTZ00092 234 IEAEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEY 313 (898)
T ss_pred HHHHHHHhcCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeccCChhHHHHhhhcCCCCC------------cccc-cCCCCeecEEEEEECCCcceeeecCCCCCccccccccc
Q 012009 300 GGKNGVVPADGTTFKYLEDKTSLPY------------EPVY-SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK 366 (473)
Q Consensus 300 GA~~gif~~D~~t~~YL~~r~~~~~------------~~l~-sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~ 366 (473)
||++||||+|++|++||+.++|.+. ..++ +|++|.|+++++||||+|||+||+|++|+|+++++|+.
T Consensus 314 GAt~gifp~De~T~~YL~~tgR~~~~~~lve~y~ka~~l~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~ 393 (898)
T PTZ00092 314 GATMGFFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRTYAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLK 393 (898)
T ss_pred CceEEEecCChhHHHHHHhcccchHHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEcccceEeccCCCChhhccCccccC
Confidence 9999999999999999999777532 1244 79999999999999999999999999999999999874
Q ss_pred c-------------------------ce--------------eceEEEecCCCCChHHHHHHHHHHHh----cCCccc--
Q 012009 367 D-------------------------VK--------------IDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK-- 401 (473)
Q Consensus 367 ~-------------------------~~--------------Id~a~IGSCTngr~eDl~~AA~iL~~----~G~kv~-- 401 (473)
. ++ ||+||||||||||+||+++||+||++ +|+|++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~ 473 (898)
T PTZ00092 394 KDFTACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPY 473 (898)
T ss_pred CCHHHhhhhhhhhhccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCC
Confidence 2 12 88999999999999999999999954 599998
Q ss_pred ceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccc----cCCCCCE---EEeecCC
Q 012009 402 VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RMNEPMA---SLCLHDK 473 (473)
Q Consensus 402 V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g----~l~~ge~---~iSTsn~ 473 (473)
|+++|+|+|++|+.++.++ |++++|+++||.| .+||||+|+|++++... .+.+||+ +|||+|.
T Consensus 474 Vk~~v~PGS~~V~~~l~~~--------Gl~~~l~~aGf~i-~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NR 543 (898)
T PTZ00092 474 IKTSLSPGSKVVTKYLEAS--------GLLKYLEKLGFYT-AGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNR 543 (898)
T ss_pred ccEEEeCCCHHHHHHHHHc--------CcHHHHHHcCCEE-eCCccccccCcCCCCCchhhhhhccCCeeeeeecccCC
Confidence 9999999999999999986 4799999999999 69999999999865311 1235776 6699994
No 28
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=3.7e-98 Score=822.21 Aligned_cols=387 Identities=20% Similarity=0.272 Sum_probs=337.5
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCCh-hhHHHHH-----HHHhCCCCcccCCc-cEEEEecCCCCCC
Q 012009 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCG-PGSFGIF-----KKEFGENAKVWDRE-KIVIIPDHYIFTS 139 (473)
Q Consensus 67 ~~~Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tg-p~~~~~~-----~~~~G~~~~V~~P~-~i~~~~DH~v~~~ 139 (473)
.+.++.|+|.+...+ ..+..|..+|++|++||+|+ |.++++. -+++|.+++..||. ++.+++||++...
T Consensus 49 d~~~~~~~~~~~~~w----~~~~ei~f~P~RV~mqD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd 124 (858)
T TIGR02333 49 DPETLSASLLQIIER----KRDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVE 124 (858)
T ss_pred CChhhHHHHHHHHcC----CCCCeeccCcceeeeccccCcchhhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceec
Confidence 355666664443333 35668899999999999999 4444432 12467788888997 9999999999653
Q ss_pred c-----HHHHHHHHHHHHHHHHcCCcee--ecccccCCcccCCCCCeeEeeeeccc---------ceeeCCceEEcCCCC
Q 012009 140 D-----ERANRNVDILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIALAQE---------GHCRPGEVLLGTDSH 203 (473)
Q Consensus 140 ~-----~~~~~~~~~lr~fa~~~gi~~f--~d~~~~~n~~~~Ppg~GI~Hqvl~ee---------g~~~PG~~ivGtDSH 203 (473)
. ....+|.+ +||.|+..++.| |..+.|.||+++|||+|||||++.|. |++.| +++||||||
T Consensus 125 ~~g~~~da~~~n~~--~e~~rN~Ery~FLkwa~~af~~~~~~ppG~GI~HQV~lE~la~vv~~~~G~a~P-d~ivGTDSH 201 (858)
T TIGR02333 125 YGGFDPDAFEKNRA--IEDRRNEDRFHFINWTKTAFKNVDVIPAGNGIMHQINLEKMSPVIQVKNGVAFP-DTCVGTDSH 201 (858)
T ss_pred cCCCCcchhHHHHH--HHHhhhHHHHHHHHHHHHHhCCcEEeCCCCCEeeeEchhhccccccccCCcccC-CeEEecCCC
Confidence 2 22233333 477777777777 77778999999999999999999885 89999 689999999
Q ss_pred CccCCcccceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEecccccc
Q 012009 204 TCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVER 283 (473)
Q Consensus 204 T~t~GalGala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~ 283 (473)
|||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+++|++||+|||+|||+++
T Consensus 202 T~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~ 281 (858)
T TIGR02333 202 TPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQPGITATDIVLALTEFLRKERVVSAYLEFFGEGARA 281 (858)
T ss_pred CCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecCCCCCHhHHHHHHHHHHhhcCccceEEEEeCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhhcccccCceeeeccCChhHHHHhhhcCCCC--Cc---------ccc--cCCCCeecEEEEEECCCcceee
Q 012009 284 LSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP--YE---------PVY--SDEKASFLSEYRFDISKLEPLV 350 (473)
Q Consensus 284 Ls~d~R~Ti~NMa~E~GA~~gif~~D~~t~~YL~~r~~~~--~~---------~l~--sD~dA~Y~~~i~iDLs~leP~V 350 (473)
||+++|||||||++|+||++|+||+|++|++||+.+++++ ++ .++ +|++|.|+++++||||+|||+|
T Consensus 282 LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve~y~k~~~l~~d~d~~a~Y~~vieiDLs~leP~V 361 (858)
T TIGR02333 282 LTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKLVETYAKAAGLWADSLKHAVYERVLEFDLSSVVRNM 361 (858)
T ss_pred CCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHHHHHHHHHHHhhcCcCCCCCeEEEEEEEcccceecc
Confidence 9999999999999999999999999999999999877754 11 133 5689999999999999999999
Q ss_pred ecCCCCCccccccccccc-----------------eeceEEEecCCCCChHHHHHHHHHHHh----cCCccc--ceeEEe
Q 012009 351 AKPHSPDNRALARECKDV-----------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--VPTFLV 407 (473)
Q Consensus 351 A~P~sPdn~~~v~e~~~~-----------------~Id~a~IGSCTngr~eDl~~AA~iL~~----~G~kv~--V~~~V~ 407 (473)
|+|++|+|+++++|+++. +|++||||||||+|+||+++||++|++ +|+|++ |+++|+
T Consensus 362 AgP~~Pd~~vpl~e~~~~~~~~~~~~~~~g~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~ 441 (858)
T TIGR02333 362 AGPSNPHARVPTSDLAARGIAGPAEEQPEGLMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFA 441 (858)
T ss_pred cCCCChhhcCCHHHhhhccccccccccccCcccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEe
Confidence 999999999999987743 378999999999999999999999964 599998 999999
Q ss_pred cchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCC-----------CEEEeecCC
Q 012009 408 PATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEP-----------MASLCLHDK 473 (473)
Q Consensus 408 PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~g-----------e~~iSTsn~ 473 (473)
|+|++|+.++.++| ++++|+++||.+ .+||||+|+|++ |.+.++ ++||||+|.
T Consensus 442 PGS~~V~~~l~~~G--------l~~~L~~aGf~v-~~~GCg~CiG~~----G~l~~~~~~~i~~~~~~~~~VsS~NR 505 (858)
T TIGR02333 442 PGSKVAQLYLEEAG--------LLPELEQLGFGI-VAFACTTCNGMS----GALDPVIQQEIIDRDLYATAVLSGNR 505 (858)
T ss_pred CCCHHHHHHHHHcC--------cHHHHHHcCCEE-eCCcchhccCcC----CCCCcchhhhhcccCceeEEEeccCC
Confidence 99999999999864 799999999999 699999999985 457776 699999994
No 29
>PLN00070 aconitate hydratase
Probab=100.00 E-value=6.5e-98 Score=825.58 Aligned_cols=377 Identities=20% Similarity=0.308 Sum_probs=331.3
Q ss_pred CCCCeEEEeeeEEEEccCCh-hhHHHH--H---HHHhCCCCcccCCc-cEEEEecCCCCCCc----HHHHHH-HHHHHHH
Q 012009 86 SPGDNVWVNVDILMTHDVCG-PGSFGI--F---KKEFGENAKVWDRE-KIVIIPDHYIFTSD----ERANRN-VDILRDF 153 (473)
Q Consensus 86 ~~Gd~v~v~vD~v~~hD~tg-p~~~~~--~---~~~~G~~~~V~~P~-~i~~~~DH~v~~~~----~~~~~~-~~~lr~f 153 (473)
..+..|.++|++|++||+|| |.++++ | -+++|.+++..||. ++.+++||++.... ....+| ...+++.
T Consensus 113 ~~~~ei~f~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN 192 (936)
T PLN00070 113 PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRN 192 (936)
T ss_pred CCCceeccCCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHh
Confidence 34568899999999999999 665554 2 23467778888997 88899999996532 333334 4556777
Q ss_pred HHHcCCceeecccccCCcccCCCCCeeEeeeecc---------cceeeCCceEEcCCCCCccCCcccceecCCChhHHHH
Q 012009 154 CMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ---------EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGF 224 (473)
Q Consensus 154 a~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~e---------eg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~ 224 (473)
+++|++.+ |.++.+.||+++|||+|||||+..| +|+++|| ++|||||||||+||||+||||||++|+++
T Consensus 193 ~Ery~flk-w~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~Pd-tlVGtDSHT~~~GglG~lg~GVGg~Eaea 270 (936)
T PLN00070 193 KERFAFLK-WGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEA 270 (936)
T ss_pred HHHhChhh-hhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCC-eEEeCCcccCCCCcccccEecccHHHHHH
Confidence 78887754 8899999999999999999999988 7899995 59999999999999999999999999999
Q ss_pred HHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceee
Q 012009 225 VLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNG 304 (473)
Q Consensus 225 ~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~g 304 (473)
+|+||++||++||+|+|+|+|+|++||+||||||+|++.|+.+|++||+|||+|+|+++||+++|||||||++|+||++|
T Consensus 271 aMlgqp~~~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g 350 (936)
T PLN00070 271 AMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMG 350 (936)
T ss_pred HHhCCeEEeeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCChhHHHHhhhcCCCCC---------c-------ccccCCCCeecEEEEEECCCcceeeecCCCCCcccccccccc-
Q 012009 305 VVPADGTTFKYLEDKTSLPY---------E-------PVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD- 367 (473)
Q Consensus 305 if~~D~~t~~YL~~r~~~~~---------~-------~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~- 367 (473)
+||+|++|++||+.+++.+. + ...+|++|.|+++++||||+|||+||+|++|+|+.+++++..
T Consensus 351 ~FP~De~T~~YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~ 430 (936)
T PLN00070 351 FFPVDHVTLQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKAD 430 (936)
T ss_pred EecCChHHHHHHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhh
Confidence 99999999999999887541 1 135789999999999999999999999999999999988733
Q ss_pred --------------------------------------ceeceEEEecCCCCChHHHHHHHHHHHh----cCCccc--ce
Q 012009 368 --------------------------------------VKIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--VP 403 (473)
Q Consensus 368 --------------------------------------~~Id~a~IGSCTngr~eDl~~AA~iL~~----~G~kv~--V~ 403 (473)
..||+||||||||+|+||+++||+||++ +|+|++ |+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk 510 (936)
T PLN00070 431 WHSCLDNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIK 510 (936)
T ss_pred HHHhhcccccccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 0267899999999999999999999965 599998 99
Q ss_pred eEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCcc----ccCCCCCE---EEeecCC
Q 012009 404 TFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTY----ARMNEPMA---SLCLHDK 473 (473)
Q Consensus 404 ~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~----g~l~~ge~---~iSTsn~ 473 (473)
++|+|+|++|+.++.++| ++++|+++||.| .+||||+|+|++++.. ..+.++|+ |+||+|.
T Consensus 511 ~~vaPGS~~V~~~l~~~G--------l~~~L~~aGf~v-~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NR 578 (936)
T PLN00070 511 TSLAPGSGVVTKYLLKSG--------LQKYLNQQGFHI-VGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNR 578 (936)
T ss_pred EEEeCCCHHHHHHHHHCC--------cHHHHHHcCCEE-cCCccccccCCCCCCCchhhhccccCCeeEEEEeccCC
Confidence 999999999999999864 799999999999 6999999999986531 11356685 7999994
No 30
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=4e-98 Score=770.24 Aligned_cols=336 Identities=24% Similarity=0.352 Sum_probs=304.9
Q ss_pred EEEEccCCh-hhHHHHH-----HHHhCCCCcccCCc-cEEEEecCCCCCC-----cHHHHHHHHHHHHHHHHcCCceeec
Q 012009 97 ILMTHDVCG-PGSFGIF-----KKEFGENAKVWDRE-KIVIIPDHYIFTS-----DERANRNVDILRDFCMEQNIKYFYD 164 (473)
Q Consensus 97 ~v~~hD~tg-p~~~~~~-----~~~~G~~~~V~~P~-~i~~~~DH~v~~~-----~~~~~~~~~~lr~fa~~~gi~~f~d 164 (473)
++++||+|| |.++|+. ..+.|.+++..||. ++.+++||++++. +....++.+.+++.+++|++.+ |.
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~-~~ 79 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLK-WG 79 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHH-HH
Confidence 468899999 7666543 13467778888997 9999999999876 4445566788899999999865 77
Q ss_pred ccccCCcccCCCCCeeEeeeecc-------------cceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHccceE
Q 012009 165 IKDLGNFKANPDYKGVCHIALAQ-------------EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKV 231 (473)
Q Consensus 165 ~~~~~n~~~~Ppg~GI~Hqvl~e-------------eg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~tg~~ 231 (473)
.+.++|+++.||++|||||++.| +|+++| +++||+||||||+||||+||||||++|++.+|+||++
T Consensus 80 ~~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P-~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~ 158 (404)
T cd01586 80 QKAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYP-DSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPI 158 (404)
T ss_pred HHHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEee-eeEeecCCCCccCCcccceEecccHHHHHHHHhCCcc
Confidence 77889999999999999999855 789999 5999999999999999999999999999999999999
Q ss_pred EeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeeccCChh
Q 012009 232 LLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGT 311 (473)
Q Consensus 232 ~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~D~~ 311 (473)
||++||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|+++++||+++|||||||++|+||++||||+|
T Consensus 159 ~~~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D-- 236 (404)
T cd01586 159 SMLLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD-- 236 (404)
T ss_pred ccCCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCcccccCCCCeecEEEEEECCCcceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHHHHH
Q 012009 312 TFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAK 391 (473)
Q Consensus 312 t~~YL~~r~~~~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~ 391 (473)
+++++||||+|||+||+|++|+|+.++ +.+||+||||||||||+|||++||+
T Consensus 237 ------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v----~~~Id~v~IGSCTNgr~eDl~~aA~ 288 (404)
T cd01586 237 ------------------------TQVVELDLSTVEPSVSGPKRPQDRVPL----HGSVVIAAITSCTNTSNPSVMLAAG 288 (404)
T ss_pred ------------------------ceEEEEEcccceeeecCCCCcccccCc----CCcEeEEEEEcCCCCCCHHHHHHHH
Confidence 789999999999999999999999999 4699999999999999999999999
Q ss_pred HHHh----cCCccc--ceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccc----cC
Q 012009 392 VFLA----SGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RM 461 (473)
Q Consensus 392 iL~~----~G~kv~--V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g----~l 461 (473)
||.+ +|+|++ |+++|+|+|++|+++++++ |++++|++|||.| .+||||+|+|++++... .+
T Consensus 289 iL~~~a~~kG~kv~~~V~~~v~PgS~~V~~~~~~~--------Gl~~~l~~aGa~v-~~pgCg~CiG~~g~~~~~~~~~~ 359 (404)
T cd01586 289 LLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEAS--------GLLPYLEKLGFHV-VGYGCTTCIGNSGPLPEEVEEAI 359 (404)
T ss_pred HHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHC--------ChHHHHHHcCCEE-cCCcchhccCCCCCCCchhhhhc
Confidence 9942 599998 9999999999999999986 4899999999999 59999999999754211 17
Q ss_pred CCCCEE---EeecCC
Q 012009 462 NEPMAS---LCLHDK 473 (473)
Q Consensus 462 ~~ge~~---iSTsn~ 473 (473)
.+||+| +||+|.
T Consensus 360 ~~ge~~~~~vsT~NR 374 (404)
T cd01586 360 KENDLVVAAVLSGNR 374 (404)
T ss_pred cCCCeEEEEEeccCC
Confidence 889996 799994
No 31
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=1.1e-88 Score=740.05 Aligned_cols=388 Identities=25% Similarity=0.383 Sum_probs=328.2
Q ss_pred CCCcHHHHHHHHhcCCC---------CC-------CCCCeEEEeeeEEEEccCChhhH-H------HHHHHHhCCCCccc
Q 012009 67 NAMTLTEKIFSRASEKP---------QL-------SPGDNVWVNVDILMTHDVCGPGS-F------GIFKKEFGENAKVW 123 (473)
Q Consensus 67 ~~~Tl~EKIla~h~~~~---------~v-------~~Gd~v~v~vD~v~~hD~tgp~~-~------~~~~~~~G~~~~V~ 123 (473)
...+.++|||..|..+. .+ ++...+..++++|++||+|+.++ + +.+. ++|.++.-.
T Consensus 31 ~~Lp~s~kiL~e~l~r~~d~~~~~i~~~~~w~~~~~~~~ei~~~p~RVvmQD~tgvpa~vdla~mr~a~~-~~g~dp~~i 109 (861)
T COG1048 31 SKLPYSLKILLENLLRGEDGTEEHIEALARWLPSGKPEKEIAFRPARVVMQDFTGVPAVVDLAAMRDAMV-ELGGDPAKI 109 (861)
T ss_pred ccCChhHHHHHHHhccccccchhHHHHHhccccccCcccccccccceeeeecccCCCeeEEhhhHHHHHH-HhcCChhhc
Confidence 44688999999886443 11 23367889999999999999432 2 3333 355554545
Q ss_pred CCc-cEEEEecCCCCCC----cHHHHHHHHHHHHHHHHcCCcee--ecccccCCcccCCCCCeeEeeeecccc----eee
Q 012009 124 DRE-KIVIIPDHYIFTS----DERANRNVDILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIALAQEG----HCR 192 (473)
Q Consensus 124 ~P~-~i~~~~DH~v~~~----~~~~~~~~~~lr~fa~~~gi~~f--~d~~~~~n~~~~Ppg~GI~Hqvl~eeg----~~~ 192 (473)
||. ++++++||++... ....++|.+ ++|.|+...+.| |.++.|.||+++|||+|||||+.-|.. +..
T Consensus 110 nP~~pvdLviDHsv~vd~~g~~~a~~~n~~--~e~~rN~ery~FL~w~~kaf~n~~vvPPGtGIiHQVnLE~la~vv~~~ 187 (861)
T COG1048 110 NPVVPVDLVIDHSVQVDVGGDPDAFEKNVE--LEFERNGERYKFLKWAAKAFYNFRVVPPGTGIIHQVNLEYLAKVVWAK 187 (861)
T ss_pred CCCCcceeeecceeeeecCCChhhhhhhhh--hHhhhhhHHHHHHHHHHHhcCCcEEECCCCceeeeehHhhhccceecc
Confidence 564 9999999999543 233344443 366666666666 666678899999999999999866642 444
Q ss_pred CC----ceEEcCCCCCccCCcccceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccC
Q 012009 193 PG----EVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAG 268 (473)
Q Consensus 193 PG----~~ivGtDSHT~t~GalGala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G 268 (473)
|| +++|||||||+|+|+||+||||||++|++++|+++++||++|++|+|+|+|+||+|||||||||+|++.|+++|
T Consensus 188 ~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGVkLtGkl~~gvTatDlvL~vt~~Lr~~g 267 (861)
T COG1048 188 PGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGVKLTGKLPEGVTATDLVLTVTGMLRKKG 267 (861)
T ss_pred CcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEEEEeccCCCCCCHHHHHHHHHHHHHhcC
Confidence 88 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeccccccCChhhhhhhhhcccccCceeeeccCChhHHHHhhhcCCCC--------Ccc------cccCCCCe
Q 012009 269 ATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP--------YEP------VYSDEKAS 334 (473)
Q Consensus 269 ~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~D~~t~~YL~~r~~~~--------~~~------l~sD~dA~ 334 (473)
+++|+|||+|||+++||+++|+|||||++|+||++|+||.|++|++||+.++|.+ |.. ..+|++|.
T Consensus 268 vVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR~~~~i~lve~y~~~~~l~~~~~~~~a~ 347 (861)
T COG1048 268 VVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGRSEEQVALVEAYAKAQGLWYDPADKDAE 347 (861)
T ss_pred ccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCCchHHHHHHHHHHHHhcccCCccccCCc
Confidence 9999999999999999999999999999999999999999999999999988843 321 22567999
Q ss_pred ecEEEEEECCCcceeeecCCCCCcccccccccc------------------------ceeceEEEecCCCCChHHHHHHH
Q 012009 335 FLSEYRFDISKLEPLVAKPHSPDNRALARECKD------------------------VKIDRVYIGSCTGGKTEDFLAAA 390 (473)
Q Consensus 335 Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~------------------------~~Id~a~IGSCTngr~eDl~~AA 390 (473)
|+++++||||+|+|+||+|++|+|+.++++++. .+|.+++|+||||++++|++.||
T Consensus 348 Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~V~iaaItSCTNtSnp~v~~aA 427 (861)
T COG1048 348 YDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIKRVYSLLGKELGDGKVVIAAITSCTNTSNPDVLIAA 427 (861)
T ss_pred cceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhcccccccccccCCCCcEEEEEEeeccCCCCHHHHHHH
Confidence 999999999999999999999999999987654 78999999999999999999999
Q ss_pred HHHHh----cCCccc--ceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCC
Q 012009 391 KVFLA----SGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEP 464 (473)
Q Consensus 391 ~iL~~----~G~kv~--V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~g 464 (473)
.||++ +|++++ |+++|+|+|++|...+.+. |++++|+++||.+ .++|||+|+|+++. +..+.
T Consensus 428 gllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~--------Gl~~~L~~lGf~i-v~~gCttCIGnsg~---L~~~i 495 (861)
T COG1048 428 GLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKA--------GLLPYLEKLGFNI-VGYGCTTCIGNSGP---LPEEI 495 (861)
T ss_pred HHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHc--------CCHHHHHhcCCEE-eccccccccCCCCC---CChhh
Confidence 99995 588887 9999999999999999886 4799999999998 69999999999754 24444
Q ss_pred CEEEe
Q 012009 465 MASLC 469 (473)
Q Consensus 465 e~~iS 469 (473)
|..|+
T Consensus 496 ~~~I~ 500 (861)
T COG1048 496 EKAIN 500 (861)
T ss_pred hhccc
Confidence 44444
No 32
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=2e-85 Score=688.10 Aligned_cols=389 Identities=27% Similarity=0.406 Sum_probs=342.1
Q ss_pred CCCCCCCCCCC-CCcHHHHHHHHhcCCC----CCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEE
Q 012009 57 RRPATTGSVKN-AMTLTEKIFSRASEKP----QLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVII 131 (473)
Q Consensus 57 r~~~~~~~~~~-~~Tl~EKIla~h~~~~----~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~ 131 (473)
|.....++..+ |+|++||||..|.... .++-++++.++||++++||.|..|++-.|-. .|. .+|.+|..| .
T Consensus 46 ~~~~v~k~l~~~p~tl~EKIlyshl~~p~~~~i~Rg~~Yl~lrPdrva~qDasaqma~LqFms-~Gl-~kvavPstI--h 121 (778)
T KOG0453|consen 46 RLFIVKKRLNKPPLTLTEKILYSHLDNPPEQKIVRGGSYLKLRPDRVAMQDASAQMALLQFMS-SGL-KKVAVPSTI--H 121 (778)
T ss_pred hHHHHHHHhcCCCchhhHHHHHhhccCCcccceecccceEEEcccceecccchhhHHHHHHHh-cCc-ccccCCceE--E
Confidence 44455555555 6999999999998543 4677899999999999999996555444432 564 789999754 7
Q ss_pred ecCCCCC----------CcHHHHHHHHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCC
Q 012009 132 PDHYIFT----------SDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTD 201 (473)
Q Consensus 132 ~DH~v~~----------~~~~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtD 201 (473)
.||.+-+ +...+.+.+++|..||++|||.| | |||.||+||++.|+ |+.||-++||||
T Consensus 122 Cdhli~a~~gg~~Dl~~a~~~Nkevydfl~saakkygi~F-w-----------~pGsGIiHQIvlEn-YAfPG~m~igTD 188 (778)
T KOG0453|consen 122 CDHLIEAQVGGDKDLQRASDLNKEVYDFLESAAKKYGIGF-W-----------KPGSGIIHQIVLEN-YAFPGLMMIGTD 188 (778)
T ss_pred ecceeeeccCCcchhhhhhhhhHHHHHHHHHHHHhcCCCc-c-----------CCCCceeeeeeeec-ccCCcceEEecc
Confidence 7886643 22334556899999999999974 6 57899999998887 999999999999
Q ss_pred CCCccCCcccceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEecccc
Q 012009 202 SHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTV 281 (473)
Q Consensus 202 SHT~t~GalGala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv 281 (473)
|||+++|+||+|++|||++|++.+|++.++.++.|++++|+|+|+|+.|+++|||||++.+.|.++|++|++|||+||||
T Consensus 189 SHTpn~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv 268 (778)
T KOG0453|consen 189 SHTPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGV 268 (778)
T ss_pred CCCCCCCccceeeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCcc
Confidence 99999999999999999999999999977779999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhhhhhhhcccccCceeeeccCChhHHHHhhhcCCCCC---------cccccCCCCeecEEEEEECCCcceeeec
Q 012009 282 ERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPY---------EPVYSDEKASFLSEYRFDISKLEPLVAK 352 (473)
Q Consensus 282 ~~Ls~d~R~Ti~NMa~E~GA~~gif~~D~~t~~YL~~r~~~~~---------~~l~sD~dA~Y~~~i~iDLs~leP~VA~ 352 (473)
++||++.|.|||||++|.||++|+||.|+++.+||+..+|.+. ..+.+|++|.|+++|+||||+|||+|.+
T Consensus 269 ~slSctgm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~ia~~a~~~~~~~l~AD~~a~Ydk~ieIdLstL~P~vnG 348 (778)
T KOG0453|consen 269 NSLSCTGMATICNMGAEIGATTSLFPYNERMIDYLQATGRNEIAREARETLDAILAADKGAHYDKIIEIDLSTLEPHVNG 348 (778)
T ss_pred ceeccccceeeccccccccccccccCCCHHHHHHHHHhCcccchhhhHHhhhhcccCCCCCCcceEEEEEhhhcccccCC
Confidence 9999999999999999999999999999999999998777531 2478999999999999999999999999
Q ss_pred CCCCCcccccccccc--------ceeceEEEecCCCCChHHHHHHHHHHH---hcCCcccceeEEecchHHHHHHhhcCC
Q 012009 353 PHSPDNRALARECKD--------VKIDRVYIGSCTGGKTEDFLAAAKVFL---ASGKKVKVPTFLVPATQKVWMDVYTLP 421 (473)
Q Consensus 353 P~sPdn~~~v~e~~~--------~~Id~a~IGSCTngr~eDl~~AA~iL~---~~G~kv~V~~~V~PaS~~V~~~a~~~g 421 (473)
|++||-..|++++.. ++|..++||||||+|+|||-.||.|.+ .+|+|.+|.+.|+|+|.||...+.+.
T Consensus 349 PfTpdl~~pvskl~e~~~kn~wp~~i~~gligSCTNSsyeDm~raa~iv~~a~~~glk~~v~F~VtpgSeqirAtierd- 427 (778)
T KOG0453|consen 349 PFTPDLSTPVSKLGENSEKNGWPIKIKVGLIGSCTNSSYEDMSRAADIVKQAKGKGLKPKVPFYVTPGSEQIRATIERD- 427 (778)
T ss_pred CCCccccChHHHHhHHhhhcCCceeeeeeEEEeecCccHHHHHHHHHHHHHHHhcCCCCCcceEeccChHHhhhhHhhc-
Confidence 999999999987754 788899999999999999999999995 46888889999999999999999875
Q ss_pred CCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEE--EeecCC
Q 012009 422 VPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMAS--LCLHDK 473 (473)
Q Consensus 422 ~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~--iSTsn~ 473 (473)
|++++|.++|+.+ ++.+||||+|.|.+. .+.+||+- ||++|.
T Consensus 428 -------G~~e~l~~~G~~v-LanaCGPCIGqw~r~--dvk~GE~ntivts~NR 471 (778)
T KOG0453|consen 428 -------GIWETLEKAGGIV-LANACGPCIGQWDRK--DIKKGEKNTIVTSYNR 471 (778)
T ss_pred -------chHHHHHhcCCEE-cccCcCCcccccccc--cccCCCcCceeeeecc
Confidence 4799999999998 799999999999764 36677765 999884
No 33
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-68 Score=556.61 Aligned_cols=371 Identities=22% Similarity=0.362 Sum_probs=313.1
Q ss_pred cHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCCh-hhHHHH------HHHHhCCCCcccCCc-cEEEEecCCCCCCcH
Q 012009 70 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCG-PGSFGI------FKKEFGENAKVWDRE-KIVIIPDHYIFTSDE 141 (473)
Q Consensus 70 Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tg-p~~~~~------~~~~~G~~~~V~~P~-~i~~~~DH~v~~~~~ 141 (473)
-=.||||....... ..-.|-.++-+|++||+|| |.+++. .+ .+|.++.-+||- ++.+++||+++-+-.
T Consensus 61 ~DVe~IldW~~t~~---k~vEvpFkPARViLQDFTGvPavVD~AaMRdAv~-~lGgdp~KinP~cP~DLviDHSvQvDf~ 136 (892)
T KOG0452|consen 61 KDVENILDWKNTQK---KQVEVPFKPARVILQDFTGVPAVVDFAAMRDAVK-NLGGDPEKINPLCPVDLVIDHSVQVDFA 136 (892)
T ss_pred HHHHHHhCccccCc---cceeeccccceeeeecccCCchheeHHHHHHHHH-HcCCCHHHcCCCCCcceEeeeeeEEeec
Confidence 34788887643221 1225778999999999999 655443 33 366677777885 999999999965433
Q ss_pred HH----HHHHHHHHHHHHHcCCcee--ecccccCCcccCCCCCeeEeee---------ecccceeeCCceEEcCCCCCcc
Q 012009 142 RA----NRNVDILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIA---------LAQEGHCRPGEVLLGTDSHTCT 206 (473)
Q Consensus 142 ~~----~~~~~~lr~fa~~~gi~~f--~d~~~~~n~~~~Ppg~GI~Hqv---------l~eeg~~~PG~~ivGtDSHT~t 206 (473)
++ ++|+. .||.|+.....| |-...|.|+.++|||.||+||+ +.+..+..| |.+|||||||+|
T Consensus 137 r~~~alqkN~~--lEF~RNkERf~FlKWgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyP-DSvVGTDSHtTM 213 (892)
T KOG0452|consen 137 RSADALQKNQE--LEFERNKERFTFLKWGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYP-DSVVGTDSHTTM 213 (892)
T ss_pred cCHHHHhhcce--eeeecchhhhhhhhhhhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecc-cccccccCccee
Confidence 32 22322 256666655455 5555679999999999999995 334557788 899999999999
Q ss_pred CCcccceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCCh
Q 012009 207 AGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSM 286 (473)
Q Consensus 207 ~GalGala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~ 286 (473)
..+||++|||||+.|++++|+++++.|-+|++|+++|+|+|.++|++.||+|.|++.|+..|.+||+|||+|+|+.+||+
T Consensus 214 idGlGvlGWGVGGIEaEAvMLGqpiSmvlP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSi 293 (892)
T KOG0452|consen 214 IDGLGVLGWGVGGIEAEAVMLGQPISMVLPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSI 293 (892)
T ss_pred ecccceeeccccceehhhhhhcCchheecccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccccCceeeeccCChhHHHHhhhcCCCCC------------ccc----ccCCCCeecEEEEEECCCcceee
Q 012009 287 EERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPY------------EPV----YSDEKASFLSEYRFDISKLEPLV 350 (473)
Q Consensus 287 d~R~Ti~NMa~E~GA~~gif~~D~~t~~YL~~r~~~~~------------~~l----~sD~dA~Y~~~i~iDLs~leP~V 350 (473)
.||+||+||++|+||+.|+||.|+.|++||+..+|.+- ..+ .++.+..|.+++++||++++|.|
T Consensus 294 aDRaTIaNMcPEYGAt~gfFPvD~vtl~yl~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~v 373 (892)
T KOG0452|consen 294 ADRATIANMCPEYGATMGFFPVDEVTLQYLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSV 373 (892)
T ss_pred hhhhhhhhcCccccceeeeeccchhHHHHHHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeecc
Confidence 99999999999999999999999999999999877431 111 24568899999999999999999
Q ss_pred ecCCCCCcccccccccc---------------------------------------ceeceEEEecCCCCChHHHHHHHH
Q 012009 351 AKPHSPDNRALARECKD---------------------------------------VKIDRVYIGSCTGGKTEDFLAAAK 391 (473)
Q Consensus 351 A~P~sPdn~~~v~e~~~---------------------------------------~~Id~a~IGSCTngr~eDl~~AA~ 391 (473)
++|.+|++++++++++. -.|-++.|.||||++++..+.+|.
T Consensus 374 SGPKRPhDrV~v~dmk~Df~scL~~~vgFKgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAg 453 (892)
T KOG0452|consen 374 SGPKRPHDRVAVSDMKADFHSCLDSKVGFKGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAG 453 (892)
T ss_pred CCCCCCccccchhhHHHHHHHhhcCcccccccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhh
Confidence 99999999999875431 135679999999999999999999
Q ss_pred HHHhc----CCccc--ceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCC
Q 012009 392 VFLAS----GKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKD 456 (473)
Q Consensus 392 iL~~~----G~kv~--V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~ 456 (473)
+|+++ |++|+ +++.+.|+|.-|-..+.+. |++.+|.+.|+.| .++||.+|+|+++.
T Consensus 454 LlAKkAv~~GL~v~PyikTSLsPGSgvVt~YL~~S--------Gv~pyL~klGF~I-vGYGC~TCiGNsgp 515 (892)
T KOG0452|consen 454 LLAKKAVELGLNVKPYIKTSLSPGSGVVTKYLSES--------GVLPYLEKLGFDI-VGYGCMTCIGNSGP 515 (892)
T ss_pred HHHHHHHhcCceecceeecccCCCCchhhhhhhhc--------cchhHHHhcCcee-eccccceeccCCCC
Confidence 99964 88887 9999999999999998876 4799999999999 69999999998643
No 34
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=5e-55 Score=458.61 Aligned_cols=386 Identities=23% Similarity=0.334 Sum_probs=335.7
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEE
Q 012009 51 APQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVI 130 (473)
Q Consensus 51 ~~~~~~r~~~~~~~~~~~~Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~ 130 (473)
.+.+-+|.|....+.++|.|++|||+.|++|.+.++||.++..++..|.+||.||||+.+.+++. - .-.|+-+-+..
T Consensus 355 ~~s~~F~~p~~p~~sgkG~TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMTrdElk~l-A--clgfsaD~vmQ 431 (852)
T COG1049 355 EASDVFRKPKAPAESGKGFTLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMTRDELKDL-A--CLGFSADLVMQ 431 (852)
T ss_pred ChhhhccCCCCccccCCcccHHHHHhhhccCCccccCCCcccceeeeeccccCCCCccHHHHHHH-H--hhcccchhhhh
Confidence 45568999999999999999999999999999999999999999999999999999999999763 1 34577888889
Q ss_pred EecCCCCCCcHHHHHHHHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcc
Q 012009 131 IPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAF 210 (473)
Q Consensus 131 ~~DH~v~~~~~~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~Gal 210 (473)
.++|..--..+...++|..|-+|...+|. ++.. ||.||+|.|+.+ +..|..+..|+||||...=+
T Consensus 432 SfCHTAaypkpvdv~th~~Lp~Fi~~rGg-----------Vslr-pgdGVIHswLNr--mllpDtvgtGGDSHTRfpiG- 496 (852)
T COG1049 432 SFCHTAAYPKPVDVKTHHTLPDFIMNRGG-----------VSLR-PGDGVIHSWLNR--MLLPDTVGTGGDSHTRFPIG- 496 (852)
T ss_pred hcccccccCCccchhccccchHHHhhcCc-----------eecC-CCCccHHHHHHh--ccCCcceecCCccccccccc-
Confidence 99998744455556677788888766554 3344 468999999865 88999999999999998765
Q ss_pred cceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHH----HHH--hhcc------CCCceEEEEec
Q 012009 211 GQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI----IGE--ISVA------GATYKSMEFVG 278 (473)
Q Consensus 211 Gala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~i----i~~--l~~~------G~~~~~vEF~G 278 (473)
++|+.|+.-+|++.+||...+.+||+|.|+|+|+|+||++-+||+.+| |++ |.+. =..|+++|..
T Consensus 497 --isFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIlEie- 573 (852)
T COG1049 497 --ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIE- 573 (852)
T ss_pred --ceecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeEEec-
Confidence 789999999999999999999999999999999999999999999987 333 4422 2468888886
Q ss_pred cccccCChhhhhhhhhcccccCceeeecc-CChhHHHHhhhcC----------CC-------------CC----cccccC
Q 012009 279 TTVERLSMEERMTLCNMVVEAGGKNGVVP-ADGTTFKYLEDKT----------SL-------------PY----EPVYSD 330 (473)
Q Consensus 279 ~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~-~D~~t~~YL~~r~----------~~-------------~~----~~l~sD 330 (473)
|+.+|.+|+-++|+..++|..|..+.+- .+|...+||+..- .+ .| ..+.+|
T Consensus 574 -glp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~lle~D 652 (852)
T COG1049 574 -GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPELLEAD 652 (852)
T ss_pred -cCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCccccCCC
Confidence 5899999999999999999999999776 5788889998631 11 12 357899
Q ss_pred CCCeecEEEEEECCCc-ceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCcccceeEEecc
Q 012009 331 EKASFLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPA 409 (473)
Q Consensus 331 ~dA~Y~~~i~iDLs~l-eP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~V~~~V~Pa 409 (473)
.||.|..+|+|||++| ||++|+|++||+++.++|+.+.+||.||||||... +.++|+||++|++.+..++.|+||+|.
T Consensus 653 ~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~~idevFiGSCMtn-iGh~ra~~klL~~~~~~~~~rLwvapP 731 (852)
T COG1049 653 ADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGDKIDEVFIGSCMTN-IGHFRAAGKLLENAKGELPTRLWVAPP 731 (852)
T ss_pred CCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCCccceeeeehhhcc-chhHHHHHHHHHhcccCCCcceEecCC
Confidence 9999999999999999 99999999999999999999999999999999877 799999999999766678899999999
Q ss_pred hHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecC
Q 012009 410 TQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHD 472 (473)
Q Consensus 410 S~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn 472 (473)
++..-.|+.++ |++.+|-+||+.+. .|||+.|+|++ .++++|.+++|||+
T Consensus 732 Tkmd~~qL~~E--------G~y~ifg~agar~E-~PGCsLCMGNQ----arv~dgatV~sTST 781 (852)
T COG1049 732 TKMDAAQLTEE--------GYYSIFGKAGARIE-MPGCSLCMGNQ----ARVADGATVFSTST 781 (852)
T ss_pred ccccHHHHhhc--------chHHHHhhccceec-CCCcccccccH----hhhccCCEEEeecc
Confidence 99999999875 58999999999996 79999999994 56899999999996
No 35
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-54 Score=439.28 Aligned_cols=467 Identities=26% Similarity=0.241 Sum_probs=435.8
Q ss_pred CCCcCCCCCCCCcccccccccCcccccCCcccccchhhcccccccEEEeeCCCCCCCCCCCCCCCCCCCcHHHHHHHHhc
Q 012009 1 MASSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRAS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~Tl~EKIla~h~ 80 (473)
|++...++|+.+.+.+ +-++....++..+|-+-..|.+.+...+..++++|+++ |+|+.||+++.|||++|||+++.+
T Consensus 1 y~k~rplaPkg~~we~-avaywktl~~de~ak~dhe~~i~aidv~pt~twgtspq-d~~pitGsvpdp~~vtd~i~a~~~ 78 (502)
T KOG0454|consen 1 YAKVRPLAPKGCKWES-AVAYWKTLFPDESAKSDHECQIKAIDVKPTSTWGTSPQ-DSPPITGSVPDPMTVTDKILARAS 78 (502)
T ss_pred CCCcccCCccccchhh-hhhhhhcccCcccccceeeeeccccceeeeeeecCCcc-cCCCcCCcCCCCcccchHHHHhhh
Confidence 5666677777777766 77788888899888888888888899999999999955 999999999999999999999999
Q ss_pred CCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCCc
Q 012009 81 EKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIK 160 (473)
Q Consensus 81 ~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~~~~~~~~~~~lr~fa~~~gi~ 160 (473)
.+.-+-+|+..|+.+|.+|+||+.+|.....+.++++..++||||+|+++.+||.+...+....++++++++.+|.+.+.
T Consensus 79 ersL~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~ea 158 (502)
T KOG0454|consen 79 ERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVVDGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEA 158 (502)
T ss_pred hhceeeccCCCCcccceeeecceeccccccccHHHHhhhhhccccceeEecccceEEecCchhhHhHHHHHhhHHHHHhh
Confidence 99878899999999999999999999999999888998899999999999999999999999999999999999999999
Q ss_pred eeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHccceEEeecCCeee
Q 012009 161 YFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLR 240 (473)
Q Consensus 161 ~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~tg~~~~kvPetv~ 240 (473)
.||+..+..||.+.|...|+||.-...++..+|++...|+||||++.++.++||.|++++++.....+++..+++|++++
T Consensus 159 gF~wreagcs~clgmnpd~l~~yercastsnRnfEgrqGa~srThlma~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~ 238 (502)
T KOG0454|consen 159 GFYWREAGCSFCLGMNPDGLCHYERCASTSNRNFEGRQGADSRTHLMAASMQFAAGIGGHDLGFREFTGKDSLKVSPSPF 238 (502)
T ss_pred ceehhhccccccccCCchhccHHHHhhhccCCCccccccccccchhhhhhHHhhccccccccccccccccccccCCCCce
Confidence 99988888999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeeccCChhHHHHhhhcC
Q 012009 241 FVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKT 320 (473)
Q Consensus 241 V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~D~~t~~YL~~r~ 320 (473)
++++|+.++...++|+++.++...-.++..++.+||.+... +|+|+.|+|||||..|.+-+.+|+|+|-.|+-|-..-.
T Consensus 239 l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~ 317 (502)
T KOG0454|consen 239 LTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGMETFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLI 317 (502)
T ss_pred EEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCcceeeeehhhhhhCCcCcccChhhhcccccchhh
Confidence 99999999999999999999999999999999999999888 99999999999999999999999999999988877766
Q ss_pred CCCCcccccCCC-CeecEEEEEECCCcceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCc
Q 012009 321 SLPYEPVYSDEK-ASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKK 399 (473)
Q Consensus 321 ~~~~~~l~sD~d-A~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~k 399 (473)
+..|-+++.|.+ +.|...+.+|.+.++|.+..|++ ||.---++.+..+|+.+++|+|+...-++.+++++..-+.|+.
T Consensus 318 ~~~f~~~~~dg~~k~~~~dFv~~vE~~~~~siii~~-DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFfrN~~atG~l 396 (502)
T KOG0454|consen 318 LSCFYEVALDGLPKSFVTDFVLPVEPLRKYSIIIGG-DNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFFRNSVATGEL 396 (502)
T ss_pred hhhhhhheecCCchhhccceeccccccceeEEEecc-CCcccccccccCcchhhhcccceecchhHHHHHHHhHHhcCCc
Confidence 666777788877 89999999999999999999999 9999999999999999999999999999999999998888999
Q ss_pred ccceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecC
Q 012009 400 VKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHD 472 (473)
Q Consensus 400 v~V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn 472 (473)
+.+...+.|..+.+|..-....+++.++.-++.++.++++. .+.|-|+.|+++.-|.++.++..|.||||+|
T Consensus 397 ~~~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f-~lkP~~~aclV~~ad~I~~~~~ke~mIss~~ 468 (502)
T KOG0454|consen 397 PPLPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYF-KLKPFGDACLVIDADGIFAYARKEGMISSTE 468 (502)
T ss_pred cCCCceeeecccceecceeeEEcccCCcceeeeeeccccee-ecCcccccCcccCchHHHHhhccccccchhh
Confidence 99999999999999998777777777777789999999993 4689999999999999999999999999987
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.72 E-value=3.6e-18 Score=176.01 Aligned_cols=136 Identities=25% Similarity=0.367 Sum_probs=120.2
Q ss_pred CcccccCCCCeecEEEEEECCCcceeeecCCCCCcccccc-------------------------------ccccceece
Q 012009 324 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAR-------------------------------ECKDVKIDR 372 (473)
Q Consensus 324 ~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~-------------------------------e~~~~~Id~ 372 (473)
|..+++|+.|.|+.+++|..-++.|.+.|.++|++..++. .+.-.++|.
T Consensus 21 wktl~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dk 100 (502)
T KOG0454|consen 21 WKTLFPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTDKILARASERSLVYMGLNPNTNVDSLMTDK 100 (502)
T ss_pred hhcccCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccchHHHHhhhhhceeeccCCCCcccceeeecc
Confidence 5668899999999999999999999999999999876643 112257899
Q ss_pred EEEecCCCCChHHHHHHHHHHHhcCCccc--c-eeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCcc
Q 012009 373 VYIGSCTGGKTEDFLAAAKVFLASGKKVK--V-PTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGA 449 (473)
Q Consensus 373 a~IGSCTngr~eDl~~AA~iL~~~G~kv~--V-~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~ 449 (473)
||||||||+|+|||+.||+|.+ |.|+. + ..+++|+|+-|.++++.+ |+.++|.++|+.|+ ..||..
T Consensus 101 Vfigsctn~riedlr~aAaVv~--g~Kia~n~k~am~vpgsglvkk~aeae--------gld~if~eagF~wr-eagcs~ 169 (502)
T KOG0454|consen 101 VFIGSCTNIRIEDLREAAAVVD--GEKIAVNPKHAMFVPGSGLVKKVAEAE--------GLDRIFNEAGFYWR-EAGCSF 169 (502)
T ss_pred eeccccccccHHHHhhhhhccc--cceeEecccceEEecCchhhHhHHHHH--------hhHHHHHhhceehh-hccccc
Confidence 9999999999999999999999 88986 3 378999999999999864 58999999999996 799999
Q ss_pred ccCCCCCccccCCCCCEEEeecCC
Q 012009 450 CLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 450 C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
|+|++.|. |-.-|+|.||+|.
T Consensus 170 clgmnpd~---l~~yercastsnR 190 (502)
T KOG0454|consen 170 CLGMNPDG---LCHYERCASTSNR 190 (502)
T ss_pred cccCCchh---ccHHHHhhhccCC
Confidence 99998875 8888999999994
No 37
>COG1679 Predicted aconitase [General function prediction only]
Probab=96.25 E-value=0.081 Score=55.62 Aligned_cols=293 Identities=13% Similarity=0.120 Sum_probs=156.3
Q ss_pred EEeeeEEEEccCChhhHHHHHHH--HhCCCCcccCCcc-EEEEecCCCC---CCcHHHHHHHHHHHHHHHHcCCceeecc
Q 012009 92 WVNVDILMTHDVCGPGSFGIFKK--EFGENAKVWDREK-IVIIPDHYIF---TSDERANRNVDILRDFCMEQNIKYFYDI 165 (473)
Q Consensus 92 ~v~vD~v~~hD~tgp~~~~~~~~--~~G~~~~V~~P~~-i~~~~DH~v~---~~~~~~~~~~~~lr~fa~~~gi~~f~d~ 165 (473)
...+|-+. ..+.|+.=++++++ +.| .+|.-|.- =-..+|+.-+ .-+++..+.+..+-+.-++-|+.-=|..
T Consensus 46 sAhIsGvs-Y~tiG~AGL~Fle~lae~g--arV~VptTlNp~~~Dl~~w~~~gv~e~f~~~q~ri~~A~~~MGv~~t~TC 122 (403)
T COG1679 46 SAHISGVS-YKTIGDAGLEFLEDLAEMG--ARVSVPTTLNPAGVDLERWRELGVDEEFAEKQRRIAKAYESMGVRVTFTC 122 (403)
T ss_pred cceeccee-ecccchhHhHHHHHHHhcC--CeEEeeeccCcceecccchhhcCCChHHhHHHHHHHHHHHHcCCceeEec
Confidence 45566665 44556655565543 234 45543421 1124455443 2356666666666666678888653321
Q ss_pred cccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHccceEE--------eecCC
Q 012009 166 KDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVL--------LKVPP 237 (473)
Q Consensus 166 ~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~tg~~~--------~kvPe 237 (473)
. +=.-.++|..|=-|.| .|..-+.=-..++|. ||...|+. .+++.++.+ ++. -|.|
T Consensus 123 t--PY~~~~~p~~Gd~~AW-aESsAV~fANSVlGA--rTnReggp---------~aL~aAi~G-r~P~yG~hl~EnR~~- 186 (403)
T COG1679 123 T--PYLLGNLPSFGDHLAW-AESSAVSFANSVLGA--RTNREGGP---------LALAAAITG-RTPLYGLHLDENRRP- 186 (403)
T ss_pred c--ccccCCCccccceeee-eccchhhhhhhhhhh--hccccCCH---------HHHHHHHhC-CCccccccccccccc-
Confidence 1 0011123445644444 454443334678887 89999954 455555543 332 2333
Q ss_pred eeeEEEEccCCCCCCHHHHHH----HHHHHhhccCCCceEEEEeccccccCChhhhhhhhhcccccCceeee--ccCChh
Q 012009 238 TLRFVLDGEMPDYLLAKDLIL----QIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGV--VPADGT 311 (473)
Q Consensus 238 tv~V~l~G~l~~gV~aKDliL----~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gi--f~~D~~ 311 (473)
++.|+++..+... |.-. ++++++-.+|. |-++.+...++-.|--+++=+++..++ +-....
T Consensus 187 ~~~v~ve~~~~~~----d~~~~~lGy~~G~~~~d~I---------P~~~~~~~p~~d~lKalgAA~atsgavam~Hvegv 253 (403)
T COG1679 187 TVIVEVEFPPKED----DSEYGALGYLAGEAAGDGI---------PYFRLALFPSEDELKALGAAMATSGAVAMYHVEGV 253 (403)
T ss_pred eEEEEEecCCCcc----hhhhHHHHHHHHHhccCCC---------CeeccCCCCCHHHHHHHHHHHhhcCceeEEEecCC
Confidence 5667777765443 3333 34444433333 333333333333333333333333332 222222
Q ss_pred HHHHhhhcCCCCCcccccCCCCeecEEEEEECCCcceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHHHHH
Q 012009 312 TFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAK 391 (473)
Q Consensus 312 t~~YL~~r~~~~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~ 391 (473)
|=+|- .. +...-...++|+..++. +.....+....++|.++|| |---+++.++..|+
T Consensus 254 TPE~~---------~~---~~~d~~e~i~i~~~d~~----------da~~~l~~~~~epdli~iG-cPHaS~~E~~~la~ 310 (403)
T COG1679 254 TPEAR---------AL---AFGDKAEKIEIEREDID----------DAWERLNTADGEPDLIALG-CPHASLEELRRLAE 310 (403)
T ss_pred Ccccc---------cc---cccccCceeeeeHHHHH----------HHHHHhhcCCCCCCEEEeC-CCCCCHHHHHHHHH
Confidence 21111 00 01111223456655442 2222223445589999998 77778999999999
Q ss_pred HHHhcCCcccceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccC
Q 012009 392 VFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLG 452 (473)
Q Consensus 392 iL~~~G~kv~V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G 452 (473)
+|+++++...++++|. .|++|+.++.++ |+.+.++++|..+ . |++|+=
T Consensus 311 ~l~~r~~~~~~~~~V~-~sr~v~~~a~~~--------G~~~~le~~g~~v-v---~DtC~v 358 (403)
T COG1679 311 LLKGRKRPAGVPLYVT-TSRAVYAQARKE--------GYLAKLEELGVKV-V---SDTCMV 358 (403)
T ss_pred HHhccCCCCCCCEEEE-cCHHHHHHHhhh--------hhHHHHHHcCCEE-e---cCceeE
Confidence 9995554466887755 699999999875 5899999999987 3 344664
No 38
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=94.99 E-value=0.064 Score=57.19 Aligned_cols=90 Identities=21% Similarity=0.373 Sum_probs=69.2
Q ss_pred cEEEEEECCCcceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCc--ccceeEEecchHHH
Q 012009 336 LSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKK--VKVPTFLVPATQKV 413 (473)
Q Consensus 336 ~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~k--v~V~~~V~PaS~~V 413 (473)
.++++|+.++|+=.... ++.-.+.++|.|+|| |=--+++-|+..|++|+ |++ ..++++|. .|+.|
T Consensus 265 ~e~i~i~~~dl~~~~~~---------l~~~~~~~~D~V~lG-cPH~S~~El~~ia~ll~--gr~~~~~~~~~i~-t~~~v 331 (400)
T PF04412_consen 265 AERITITDADLEEVYEE---------LNTAGDEKVDLVALG-CPHLSLEELREIAELLE--GRKVHPNVPLWIT-TSRAV 331 (400)
T ss_pred ceEEEeCHHHHHHHHHH---------hccCCCCCCCEEEEC-CCCCCHHHHHHHHHHHh--CCCCCCCceEEEE-CCHHH
Confidence 57888888877644332 223345799999998 77888999999999999 666 44777755 68899
Q ss_pred HHHhhcCCCCCCCCccHHHHHHHcCccccCCCCC
Q 012009 414 WMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSC 447 (473)
Q Consensus 414 ~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgC 447 (473)
+.++.+. |+.+.|+++|+.+ +.-+|
T Consensus 332 ~~~a~~~--------G~~~~le~~G~~i-v~dTC 356 (400)
T PF04412_consen 332 YELAERM--------GYVERLEKAGVQI-VTDTC 356 (400)
T ss_pred HHHHHhC--------CHHHHHHHcCCEE-Ecccc
Confidence 9999875 4899999999998 44444
No 39
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=83.75 E-value=2.3 Score=45.39 Aligned_cols=296 Identities=16% Similarity=0.181 Sum_probs=145.2
Q ss_pred CeEEEeeeEEEEccCChhhHHHHHHH--HhCCCCcccCCccEE-EEecCC--CCCCcHHHHHHHHHHHHHHHHcCCceee
Q 012009 89 DNVWVNVDILMTHDVCGPGSFGIFKK--EFGENAKVWDREKIV-IIPDHY--IFTSDERANRNVDILRDFCMEQNIKYFY 163 (473)
Q Consensus 89 d~v~v~vD~v~~hD~tgp~~~~~~~~--~~G~~~~V~~P~~i~-~~~DH~--v~~~~~~~~~~~~~lr~fa~~~gi~~f~ 163 (473)
++-...+|-+. +-..|+.-++++++ +.| .+|.=|.-+- ..+|+. -..-|+...+.+.++.+.-++-|++--|
T Consensus 33 ~I~~ahisGvs-y~tiG~agl~f~e~l~~~g--akv~VpTTlNp~~~D~~w~~~gvd~~f~~~q~~i~~ay~~mG~~~t~ 109 (389)
T cd01355 33 DIKSAHISGVS-YKTIGDAGLEFLERLADQG--AKVAVPTTLNPISMDLHWRELGVDEEFAEKQARLVKAYKAMGVDPTF 109 (389)
T ss_pred cccceEEccee-ecccchhhHHHHHHHHhCC--CeEeecCccCCcccCcchhhcCCCHHHHHHHHHHHHHHHHcCCcccc
Confidence 34455566664 33566666666654 344 3442222111 234543 1233566677777788888889987644
Q ss_pred cccccCCccc-CCCCCeeEeeeecccceeeCCceEEcCCCCCccCCcccceecCCChhHHHHHHccceEE--------ee
Q 012009 164 DIKDLGNFKA-NPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVL--------LK 234 (473)
Q Consensus 164 d~~~~~n~~~-~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalGala~GvG~td~a~~l~tg~~~--------~k 234 (473)
... -+-. ++|..|=-+.+ .|.+-+-=-..|+|+ .|..+| |-++++.++.+ ++. =|
T Consensus 110 TCt---PY~~~~~P~~Ge~iAW-aESnAV~yANSVlGA--RTnreg---------g~~aLaaAitG-r~P~~GlhldEnR 173 (389)
T cd01355 110 TCT---PYQLENLPKKGEHIAW-AESSAVVYANSVLGA--RTNREG---------GPSALAAAITG-RTPEYGVHLDENR 173 (389)
T ss_pred ccc---CccCCCCCCCCCeeeE-ecccceeeeeccccc--cccCCC---------CHHHHHHHHhC-CCCccccccccCc
Confidence 321 0000 12344433332 343322222456666 566666 45566666644 332 24
Q ss_pred cCCeeeEEEEccCCCCCCHHHHHHHHHHHh-hccCCCceEEEEeccccccCChhhhhhhhhcccccCceeeeccCChhHH
Q 012009 235 VPPTLRFVLDGEMPDYLLAKDLILQIIGEI-SVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTF 313 (473)
Q Consensus 235 vPetv~V~l~G~l~~gV~aKDliL~ii~~l-~~~G~~~~~vEF~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~D~~t~ 313 (473)
.|..+ |+++..+.. .|.---++|-+ |.. ..+.+==|.|-. ...+.|+.-.+|--..=.|+..- |=.
T Consensus 174 ~~~~~-v~v~~~~~~----d~~~~~~LG~~iG~~-~~~~IP~i~gl~-~~p~~d~LKalgAA~Atsgs~am-~Hi----- 240 (389)
T cd01355 174 KARLI-VEVEAAEPL----DDSDYGALGYLVGKI-AGDRIPVITGLD-ARPSEDELKALGAAMATSGSVAM-FHI----- 240 (389)
T ss_pred CCeEE-EEeccCCCc----cccchhHHHHhhccc-cCCCCCeeecCC-CCCCHHHHHHHhHHHhhccccee-EEE-----
Confidence 44444 888633321 34444444322 100 000010122211 12344444444332222222221 111
Q ss_pred HHhhhcCCCCCcccccCC---CCeecEEEEEECCCcceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHHHH
Q 012009 314 KYLEDKTSLPYEPVYSDE---KASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAA 390 (473)
Q Consensus 314 ~YL~~r~~~~~~~l~sD~---dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA 390 (473)
..+.|.. ...-.+.++|+-++|+-.... ++. ...++|.++|| |==-+++-++.-|
T Consensus 241 -----------~gvTPE~~~~~~~~~e~i~i~~~dl~~~~~~---------~~~-~~~~~dlv~lG-cPH~Sl~E~~~la 298 (389)
T cd01355 241 -----------VGVTPEAPTLGLDAAETVELTRADLDEAREN---------LNA-DGSEPDLVVLG-CPHASLEELRKLA 298 (389)
T ss_pred -----------eCCCCCCcccCCCcceEEEecHHHHHHHHHh---------hcC-cccCCCEEEec-CCCCCHHHHHHHH
Confidence 1111211 111124667764444221110 011 11269999995 7777899999999
Q ss_pred HHHHhcCCccc--ceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCC
Q 012009 391 KVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGG 453 (473)
Q Consensus 391 ~iL~~~G~kv~--V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~ 453 (473)
++|+ |++.+ ++++|. .|+.|+ +.+ .|+.+.|+++|+.+ +.-.|- |+-.
T Consensus 299 ~ll~--g~~~~~~~~~~v~-t~r~v~--a~~--------~g~~~~ie~~G~~i-~~DtC~-~v~~ 348 (389)
T cd01355 299 DLLA--GRRVAPSVPLYVT-TSRAVY--AKR--------MGYVDVIEKLGARV-LTDTCM-VVSP 348 (389)
T ss_pred HHhc--CCccCCCCCEEEE-ccHHHH--Hhh--------ccHHHHHHHcCCEE-Eeeecc-eeec
Confidence 9998 76554 676654 578887 444 35899999999998 455555 6553
No 40
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=37.19 E-value=31 Score=38.20 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHH
Q 012009 250 YLLAKDLILQIIGE 263 (473)
Q Consensus 250 gV~aKDliL~ii~~ 263 (473)
+-.+||||+.||.+
T Consensus 345 ~e~~kDli~~lL~K 358 (576)
T KOG0585|consen 345 NEDLKDLIKRLLEK 358 (576)
T ss_pred cHHHHHHHHHHhhc
Confidence 56789999998754
No 41
>PRK15447 putative protease; Provisional
Probab=31.77 E-value=82 Score=32.26 Aligned_cols=78 Identities=23% Similarity=0.320 Sum_probs=47.3
Q ss_pred ccccceeceEEEec--CC---CCChHHHHHHHHHHHhcCCcccc--eeEE-ecchHHHHHHhhcCCCCC--CCCccHHHH
Q 012009 364 ECKDVKIDRVYIGS--CT---GGKTEDFLAAAKVFLASGKKVKV--PTFL-VPATQKVWMDVYTLPVPG--SGGKTCSQI 433 (473)
Q Consensus 364 e~~~~~Id~a~IGS--CT---ngr~eDl~~AA~iL~~~G~kv~V--~~~V-~PaS~~V~~~a~~~g~~g--~~~~g~~~~ 433 (473)
.++...+|.||+|- |. |=+.+|+..+.+.++++|+|+-| +.++ .+.-.+-+.+..+.+..+ ...-|.+..
T Consensus 23 ~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~d~g~l~~ 102 (301)
T PRK15447 23 RAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEANDLGAVRL 102 (301)
T ss_pred HHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEeCHHHHHH
Confidence 44555699999992 21 56789999999999999999864 4443 254434444444443221 112345566
Q ss_pred HHHcCccc
Q 012009 434 FEEAGCDT 441 (473)
Q Consensus 434 l~~AGa~i 441 (473)
+.+.|..+
T Consensus 103 ~~e~~~~l 110 (301)
T PRK15447 103 LAERGLPF 110 (301)
T ss_pred HHhcCCCE
Confidence 66655543
No 42
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=30.49 E-value=83 Score=33.87 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=49.5
Q ss_pred ceeceEEEecCCCCC--hHHHHHHHHHHHhcCCcccceeEEecchHHHH-HHhhcCCCCCC---CCccHHHHHHHcCccc
Q 012009 368 VKIDRVYIGSCTGGK--TEDFLAAAKVFLASGKKVKVPTFLVPATQKVW-MDVYTLPVPGS---GGKTCSQIFEEAGCDT 441 (473)
Q Consensus 368 ~~Id~a~IGSCTngr--~eDl~~AA~iL~~~G~kv~V~~~V~PaS~~V~-~~a~~~g~~g~---~~~g~~~~l~~AGa~i 441 (473)
++|.++-|-.|+-.. --.|.- ++-|.+.|.||.|++.+-|.+.... .. .|++.. ...-+.+.|++.|+..
T Consensus 32 v~I~~ahisGvsy~tiG~agl~f-~e~l~~~gakv~VpTTlNp~~~D~~w~~---~gvd~~f~~~q~~i~~ay~~mG~~~ 107 (389)
T cd01355 32 IDIKSAHISGVSYKTIGDAGLEF-LERLADQGAKVAVPTTLNPISMDLHWRE---LGVDEEFAEKQARLVKAYKAMGVDP 107 (389)
T ss_pred ccccceEEcceeecccchhhHHH-HHHHHhCCCeEeecCccCCcccCcchhh---cCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 477788888887722 234433 3444457888999999999986422 11 111000 0012678999999985
Q ss_pred cCCCCCccccC
Q 012009 442 PASPSCGACLG 452 (473)
Q Consensus 442 ~~~pgCg~C~G 452 (473)
..+|.|=+-
T Consensus 108 --t~TCtPY~~ 116 (389)
T cd01355 108 --TFTCTPYQL 116 (389)
T ss_pred --cccccCccC
Confidence 589999844
No 43
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=29.21 E-value=95 Score=35.05 Aligned_cols=33 Identities=30% Similarity=0.269 Sum_probs=24.0
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCceEEEEecccc
Q 012009 247 MPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTV 281 (473)
Q Consensus 247 l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv 281 (473)
.|-.+-=+|+.-.+-..+...| +.-+||.=.++
T Consensus 55 ~p~h~hl~~l~~~vk~~i~~aG--g~p~ef~t~~v 87 (575)
T COG0129 55 VPGHQHLKDLAQLVKEGIREAG--GVPVEFGTIAV 87 (575)
T ss_pred cCchhhHHHHHHHHHHHHHHcC--CceeEeCCCCc
Confidence 4556677888888888888887 66788875443
No 44
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=26.57 E-value=28 Score=31.64 Aligned_cols=33 Identities=36% Similarity=0.576 Sum_probs=26.2
Q ss_pred EEEecCCCCChHHHHHHHHHHHhcCCccc---------ceeEEecc
Q 012009 373 VYIGSCTGGKTEDFLAAAKVFLASGKKVK---------VPTFLVPA 409 (473)
Q Consensus 373 a~IGSCTngr~eDl~~AA~iL~~~G~kv~---------V~~~V~Pa 409 (473)
=|.||||=- +||+.||.||. +-||. ..++++|+
T Consensus 20 ~Y~GSitID--~dlldaagile--~EkV~I~N~nNGaRf~TYvI~g 61 (126)
T COG0853 20 NYVGSITID--EDLLDAAGILE--NEKVDIVNVNNGARFSTYVIAG 61 (126)
T ss_pred ceEEeEEEC--HHHHhhcCCCC--CceEEEEECCCCcEEEEEEEEc
Confidence 399999986 89999999999 77764 34667774
No 45
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=25.70 E-value=24 Score=31.48 Aligned_cols=33 Identities=39% Similarity=0.520 Sum_probs=26.4
Q ss_pred EEEecCCCCChHHHHHHHHHHHhcCCccc---------ceeEEecc
Q 012009 373 VYIGSCTGGKTEDFLAAAKVFLASGKKVK---------VPTFLVPA 409 (473)
Q Consensus 373 a~IGSCTngr~eDl~~AA~iL~~~G~kv~---------V~~~V~Pa 409 (473)
=|.||||=- +||+.||.|+. +-+|. ..++++|+
T Consensus 20 ~YeGSitID--~~Ll~aagi~~--~E~V~I~Nv~NG~Rf~TYvI~g 61 (111)
T cd06919 20 NYEGSITID--EDLLEAAGILP--YEKVLVVNVNNGARFETYVIPG 61 (111)
T ss_pred ccceeEEEC--HHHHHhcCCCC--CCEEEEEECCCCcEEEEEEEEc
Confidence 399999987 89999999999 77774 33667774
No 46
>PF01986 DUF123: Domain of unknown function DUF123; InterPro: IPR002837 This archaebacterial domain has no known function. In Methanocaldococcus jannaschii (Methanococcus jannaschii) it occurs with an endonuclease domain IPR003265 from INTERPRO.
Probab=23.23 E-value=2e+02 Score=25.10 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=16.2
Q ss_pred HHHHHHHcCccccCCCCCccccC
Q 012009 430 CSQIFEEAGCDTPASPSCGACLG 452 (473)
Q Consensus 430 ~~~~l~~AGa~i~~~pgCg~C~G 452 (473)
+.+.|.+.+-.|+ +.||+=|--
T Consensus 70 lA~~l~~~~~~i~-gFGaSDc~c 91 (99)
T PF01986_consen 70 LAQALSELFEPIP-GFGASDCRC 91 (99)
T ss_pred HHHHHHhcCCcCC-CCCCcCCCC
Confidence 5667777775564 899999973
No 47
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=22.62 E-value=30 Score=31.53 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=26.8
Q ss_pred EEEecCCCCChHHHHHHHHHHHhcCCccc---------ceeEEecch
Q 012009 373 VYIGSCTGGKTEDFLAAAKVFLASGKKVK---------VPTFLVPAT 410 (473)
Q Consensus 373 a~IGSCTngr~eDl~~AA~iL~~~G~kv~---------V~~~V~PaS 410 (473)
=|.||||=- +||+.||.||. +-+|. ..++++|+-
T Consensus 21 ~Y~GSitID--~~Ll~aagi~p--~E~V~V~Nv~NG~Rf~TYvI~g~ 63 (126)
T PRK05449 21 NYEGSITID--EDLLDAAGILE--NEKVQIVNVNNGARFETYVIAGE 63 (126)
T ss_pred ccceeEEEC--HHHHHhcCCCC--CCEEEEEECCCCcEEEEEEEEcC
Confidence 399999987 89999999999 77774 346677743
No 48
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.13 E-value=92 Score=24.93 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHhcCC
Q 012009 383 TEDFLAAAKVFLASGK 398 (473)
Q Consensus 383 ~eDl~~AA~iL~~~G~ 398 (473)
..|-+.|-++|+++|.
T Consensus 11 t~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 11 THDAMKAEKLLKKNGI 26 (73)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 3577777788885544
No 49
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=20.98 E-value=34 Score=31.19 Aligned_cols=34 Identities=35% Similarity=0.474 Sum_probs=26.9
Q ss_pred EEEecCCCCChHHHHHHHHHHHhcCCccc---------ceeEEecch
Q 012009 373 VYIGSCTGGKTEDFLAAAKVFLASGKKVK---------VPTFLVPAT 410 (473)
Q Consensus 373 a~IGSCTngr~eDl~~AA~iL~~~G~kv~---------V~~~V~PaS 410 (473)
=|.||||=- +||+.||.||. +-+|. ..++++|+-
T Consensus 21 ~Y~GSItID--~~Lm~aagi~p--~E~V~V~Nv~NG~Rf~TYvI~G~ 63 (126)
T TIGR00223 21 NYEGSITID--EDLLDAAGILE--NEKVDIVNVNNGKRFSTYAIAGK 63 (126)
T ss_pred ccceeEEEC--HHHHHhcCCCC--CCEEEEEECCCCcEEEEEEEEcC
Confidence 399999987 89999999999 77774 346677743
Done!