Query 012009
Match_columns 473
No_of_seqs 164 out of 1377
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 19:49:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c96_A Mitochondrial aconitase 100.0 3E-109 1E-113 910.4 35.5 382 66-473 32-446 (753)
2 2b3y_A Iron-responsive element 100.0 3E-102 1E-106 863.9 22.1 395 66-473 49-535 (888)
3 1l5j_A Aconitate hydratase 2; 100.0 4.5E-99 2E-103 834.5 37.9 387 49-473 362-791 (865)
4 3oug_A Aspartate 1-decarboxyla 37.7 3.6 0.00012 35.5 -1.7 32 374-409 25-65 (114)
5 2c45_A Aspartate 1-decarboxyla 31.9 4.4 0.00015 36.0 -2.2 24 374-401 22-45 (139)
6 1pqh_A Aspartate 1-decarboxyla 28.3 6.4 0.00022 35.1 -1.8 32 374-409 39-79 (143)
7 1usm_A DCOH, hepatocyte nuclea 22.2 1.3E+02 0.0044 23.6 5.0 40 221-260 33-72 (80)
8 2d59_A Hypothetical protein PH 20.5 1.2E+02 0.0041 25.9 4.9 65 362-450 71-135 (144)
9 3jst_A Putative pterin-4-alpha 20.0 1.2E+02 0.0042 24.7 4.6 40 220-259 50-89 (97)
10 3hxa_A Pterin-4-alpha-carbinol 16.9 1.8E+02 0.0062 24.0 5.0 40 220-259 54-93 (104)
No 1
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=3.3e-109 Score=910.39 Aligned_cols=382 Identities=25% Similarity=0.361 Sum_probs=351.9
Q ss_pred CCCCcHHHHHHHHhcCCCC---C-CCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccEEEEecCCCCCC--
Q 012009 66 KNAMTLTEKIFSRASEKPQ---L-SPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS-- 139 (473)
Q Consensus 66 ~~~~Tl~EKIla~h~~~~~---v-~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i~~~~DH~v~~~-- 139 (473)
++||||+||||++|++... + ++||++.+++|++++||+|+|+++..|++ .|. .++++|+++ ++||++|+.
T Consensus 32 ~~~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~-~G~-~~v~~P~~~--~~DH~v~~~~~ 107 (753)
T 1c96_A 32 NRPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-SGL-PKVAVPSTI--HCDHLIEAQLG 107 (753)
T ss_dssp CSCCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHH-HTC-SSCSSCEEE--ECCSSCCBSSC
T ss_pred CCCCCHHHHHHHHHhCCcccccccCCCCEEEEEccEEEEeccccHHHHHHHHH-hCC-CCCCCCCce--ecCCCCCCCCC
Confidence 4789999999999997752 3 67899999999999999999999998865 674 569999874 799999988
Q ss_pred ---c-----HHHHHHHHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCCccc
Q 012009 140 ---D-----ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFG 211 (473)
Q Consensus 140 ---~-----~~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GalG 211 (473)
+ .++.++++++|+||++||+. || ||++|||||++.|. +++||+++||+||||||+||||
T Consensus 108 ~~~d~~~~~~~n~e~~~~l~~~a~~~gi~-~~-----------~pg~GI~Hqv~~E~-~~~Pg~~ivGtDSHT~t~GalG 174 (753)
T 1c96_A 108 GEKDLRRAKDINQEVYNFLATAGAKYGVG-FW-----------RPGSGIIHQIILEN-YAYPGVLLIGTDSHTPNGGGLG 174 (753)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHTCE-EE-----------CTTSBCHHHHHHHH-TCCTTCEEEESSTTGGGGGGGT
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHCCCE-EE-----------CCCCCeeCeEeccc-ccCCCcEEecCCCCCCccchhh
Confidence 3 34457899999999999995 55 56899999998876 9999999999999999999999
Q ss_pred ceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccCChhhhhh
Q 012009 212 QFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMT 291 (473)
Q Consensus 212 ala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~Ls~d~R~T 291 (473)
+||||||++|++++|+++++||++||+|+|+|+|+|++||++|||||+|+++|+++|++|++|||+|+||++||+++|||
T Consensus 175 ~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~LS~~~R~T 254 (753)
T 1c96_A 175 GICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMAT 254 (753)
T ss_dssp CEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGGSCHHHHHH
T ss_pred hheeccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHHHHHHHhccCCcceEEEEEECCccccCCcchhhh
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCceeeeccCChhHHHHhhhcCCC--------CCcccccCCCCeecEEEEEECCCcceeeecCCCCCcccccc
Q 012009 292 LCNMVVEAGGKNGVVPADGTTFKYLEDKTSL--------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAR 363 (473)
Q Consensus 292 i~NMa~E~GA~~gif~~D~~t~~YL~~r~~~--------~~~~l~sD~dA~Y~~~i~iDLs~leP~VA~P~sPdn~~~v~ 363 (473)
||||++|+||++|+||+|++|++||+.+++. .|+.|++|++|.|+++++||||+|||+||+|++|+|+.+++
T Consensus 255 I~NMa~E~GA~~gifp~De~T~~YL~~~gr~~~~~~~~~y~~~l~~D~~A~Yd~~ieiDls~leP~va~P~~P~~~~~v~ 334 (753)
T 1c96_A 255 ICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVA 334 (753)
T ss_dssp HHHHGGGGTCSEEECCCCHHHHHHHHHTTCHHHHHHHHHTGGGSSCCTTCCCSEEEEEEGGGCCCEEECSSSTTCEEEHH
T ss_pred hhccchhhCcccccccCcHHHHHHHHhcCCcHHHHHHHHHHhhccCCCCCceeEEEEEEccccceeecCCCCCcceeEhH
Confidence 9999999999999999999999999999872 24678899999999999999999999999999999999999
Q ss_pred ccccc--------eeceEEEecCCCCChHHHHHHHHHHHh---cCCcccceeEEecchHHHHHHhhcCCCCCCCCccHHH
Q 012009 364 ECKDV--------KIDRVYIGSCTGGKTEDFLAAAKVFLA---SGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQ 432 (473)
Q Consensus 364 e~~~~--------~Id~a~IGSCTngr~eDl~~AA~iL~~---~G~kv~V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~ 432 (473)
|+.+. +||+||||||||+|+|||++||+|||+ +|++.+|+++|+|+|++|+.+|+++ |+++
T Consensus 335 e~~~~~~~~~~~~~Vd~~~IGSCTN~~~~Dl~~AA~ilkga~~~~v~~~V~~~v~PgS~~V~~~~~~~--------Gl~~ 406 (753)
T 1c96_A 335 EVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERD--------GYAQ 406 (753)
T ss_dssp HHHHHHHHHTCCCBEEEEEEBTTTBCSHHHHHHHHHHHHHHHTTTCCCSSEEEECCSBHHHHHHHHHT--------THHH
T ss_pred HhhhhHhhcCCccceEEEEEecCCCCCHHHHHHHHHHhccHhhcCCCCCceEEEeCCCHHHHHHHHHc--------CcHH
Confidence 99987 999999999999999999999999996 5666669999999999999999986 5899
Q ss_pred HHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 433 IFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 433 ~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
+|++|||.| .+||||+|+|++.+..+..+++++|+||+|.
T Consensus 407 ~l~~aG~~i-~~~gCg~CiG~~~~~~~~~~~~~~~vsT~NR 446 (753)
T 1c96_A 407 VLRDVGGIV-LANACGPCIGQWDRKDIKKGEKNTIVTSYNR 446 (753)
T ss_dssp HHHHTTEEE-CCSSCGGGGTCBCCCSSCTTCCEEEEESSSC
T ss_pred HHHHcCcEE-ecCCceeeecCCCCcccccCCcceEEecccC
Confidence 999999999 5999999999988754566788889999994
No 2
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=2.9e-102 Score=863.94 Aligned_cols=395 Identities=19% Similarity=0.284 Sum_probs=349.3
Q ss_pred CCCCcHHHHHHHHhcCC-CCCCCCCeEEEeeeEEEEccCChhhHHHHHHHH------hCCCCcccCCc-cEEEEecCCCC
Q 012009 66 KNAMTLTEKIFSRASEK-PQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKE------FGENAKVWDRE-KIVIIPDHYIF 137 (473)
Q Consensus 66 ~~~~Tl~EKIla~h~~~-~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~------~G~~~~V~~P~-~i~~~~DH~v~ 137 (473)
..|+|++||++.++++- +..++|+++.+++|++++||+|+|+++..|+++ +|.++...+|. ++++++||++|
T Consensus 49 ~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~pdrvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~ 128 (888)
T 2b3y_A 49 CDEFLVKKQDIENILHWNVTQHKNIEVPFKPARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQ 128 (888)
T ss_dssp CCSSSSCHHHHHHHHTHHHHTTTTCEEEECCSEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCC
T ss_pred cCCcchhHHHHHHHhcccccCCCCCEEEEeccEEEEEccccHHHHHHHHHHHHHHHhcCCChhhcCCCCCeeEEeCCCCC
Confidence 45899999999998852 335789999999999999999999999887542 35444445676 47899999999
Q ss_pred CCcHH--HHHHHHHHHHHHHHcCCcee--ecccccCCcccCCCCCeeEeeeecc---------cceeeCCceEEcCCCCC
Q 012009 138 TSDER--ANRNVDILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIALAQ---------EGHCRPGEVLLGTDSHT 204 (473)
Q Consensus 138 ~~~~~--~~~~~~~lr~fa~~~gi~~f--~d~~~~~n~~~~Ppg~GI~Hqvl~e---------eg~~~PG~~ivGtDSHT 204 (473)
+.+.. .+..++.+++|.|+.+++.| |..+.+.||++.|||+|||||++.| +|+++|| ++|||||||
T Consensus 129 ~~~~~~~da~~~n~~~e~~rN~e~~~fL~w~~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~-tlVGtDSHT 207 (888)
T 2b3y_A 129 VDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPD-SLVGTDSHT 207 (888)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEEC-EEEESSGGG
T ss_pred cCCccccCHHHHHHHHHHHHhcchHHHHHHHHHhccCCCCCCCCCCCcceehhhhccccccccCcccccC-eEEecCCCc
Confidence 87633 44556677889988887666 6677788999999999999999888 8999995 999999999
Q ss_pred ccCCcccceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHHhhccCCCceEEEEeccccccC
Q 012009 205 CTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERL 284 (473)
Q Consensus 205 ~t~GalGala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEF~G~gv~~L 284 (473)
||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||++|||||+|+++|+++|++||+|||+|+|+++|
T Consensus 208 ~t~GglG~la~GVGg~eae~~mag~~~~~~~PevvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~L 287 (888)
T 2b3y_A 208 TMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQL 287 (888)
T ss_dssp GGGGGGTCEEEECCHHHHHHHHTTCCEEEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTS
T ss_pred cccCcceeEEEccCHHHHHHHHhcCcEeecCCCEEEEEEEccCCCCcchhHHHHHHHHHhccCCccceEEEEecCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhhcccccCceeeeccCChhHHHHhhhcCCCC--------C-------cccccC-CCCeecEEEEEECCCcce
Q 012009 285 SMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP--------Y-------EPVYSD-EKASFLSEYRFDISKLEP 348 (473)
Q Consensus 285 s~d~R~Ti~NMa~E~GA~~gif~~D~~t~~YL~~r~~~~--------~-------~~l~sD-~dA~Y~~~i~iDLs~leP 348 (473)
|+++|||||||++|+||++|+||+|++|++||+.+++.+ | +.+.+| ++|.|+++++||||+|||
T Consensus 288 S~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~~~~~e~y~~a~~l~~~l~~d~~dA~Yd~~ieiDLs~leP 367 (888)
T 2b3y_A 288 SIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVP 367 (888)
T ss_dssp CHHHHHHHHHTHHHHTCSEEECCCCHHHHHHHHHTTCCHHHHHHHHHHHHHHTCCCCTTCGGGCCCCSEEEEEEGGGCCS
T ss_pred cccchhhhhhcchhhCCeeEEecCcHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhccCCCCCCCceEEEEEEEhhheeE
Confidence 999999999999999999999999999999999988743 2 222335 899999999999999999
Q ss_pred eeecCCCCCccccccccc--------------c-------------------------ceeceEEEecCCCCChHHHHHH
Q 012009 349 LVAKPHSPDNRALARECK--------------D-------------------------VKIDRVYIGSCTGGKTEDFLAA 389 (473)
Q Consensus 349 ~VA~P~sPdn~~~v~e~~--------------~-------------------------~~Id~a~IGSCTngr~eDl~~A 389 (473)
+||+|++|+|+.+++|+. | .+||+||||||||+|+|||++|
T Consensus 368 ~VAgP~~P~~~~plse~~~~~~~~l~~~~g~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~a 447 (888)
T 2b3y_A 368 CCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLG 447 (888)
T ss_dssp EEECSSCTTCEEEGGGHHHHHHHHHHSCSBTTBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHH
T ss_pred eecCCCCcccccChHHhhhhHHHhhhcccccccccccchhhcccceeecCCccccccCCcEEEEEEecCCCCCcHHHHHH
Confidence 999999999999998653 1 1478999999999999999999
Q ss_pred HHHHHh----cCCccc--ceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCC
Q 012009 390 AKVFLA----SGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNE 463 (473)
Q Consensus 390 A~iL~~----~G~kv~--V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ 463 (473)
|+||++ +|+|++ |+++|+|+|++|+.++.++| ++++|++|||.| .+||||+|+|++++. +++
T Consensus 448 A~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~G--------l~~~l~~aGf~i-~~~GC~~CiG~~~~l---~~~ 515 (888)
T 2b3y_A 448 AGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESG--------VMPYLSQLGFDV-VGYGCMTCIGNSGPL---PEP 515 (888)
T ss_dssp HHHHHHHHHHTTCCCCTTSEEEECCSSHHHHHHHHHTS--------CHHHHHHTTCCB-CCSSCGGGGTCCCCC---CHH
T ss_pred HHHHHHHHHhcCCCCCCCceEEEeCCCHHHHHHHHHcC--------cHHHHHHcCCEE-eCCCCcceeCCCCCC---Cch
Confidence 999953 499997 99999999999999999864 799999999999 599999999998663 544
Q ss_pred -------CC---EEEeecCC
Q 012009 464 -------PM---ASLCLHDK 473 (473)
Q Consensus 464 -------ge---~~iSTsn~ 473 (473)
|| ++|||+|.
T Consensus 516 ~~~~i~~ge~~~~~vsS~NR 535 (888)
T 2b3y_A 516 VVEAITQGDLVAVGVLSGNR 535 (888)
T ss_dssp HHHHHHHHTCCCEEEESSSC
T ss_pred hhhhhccCCeeEEEEeccCC
Confidence 77 56999994
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=4.5e-99 Score=834.47 Aligned_cols=387 Identities=20% Similarity=0.287 Sum_probs=352.2
Q ss_pred eeCCCCCCCCCCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEEccCChhhHHHHHHHHhCCCCcccCCccE
Q 012009 49 VMAPQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 128 (473)
Q Consensus 49 ~~~~~~~~r~~~~~~~~~~~~Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~~~G~~~~V~~P~~i 128 (473)
-..|..-+|+|......+|||||+||||++|++.+.|++||+|++++|++++||+|+|++++.|++ +| ..+|+|+++
T Consensus 362 ~~~~~~~f~~~~~~~~~~mg~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~~~~~~~-lg--~~~~~~d~v 438 (865)
T 1l5j_A 362 GLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKD-LA--CLGFSADLV 438 (865)
T ss_dssp TCCCCCSSCCCCCCCCCCSCCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHHHHHHHH-TT--CCSCCSSCE
T ss_pred CCCchhhccCCCCCCCCCCCccHHHHHHHHHhCCCccCCCCEEEEEeeEEEEeccCcHHHHHHHHH-cC--CCcCCCCeE
Confidence 345666789999999999999999999999999888999999999999999999999999999975 66 468999999
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHHHcCCceeecccccCCcccCCCCCeeEeeeecccceeeCCceEEcCCCCCccCC
Q 012009 129 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAG 208 (473)
Q Consensus 129 ~~~~DH~v~~~~~~~~~~~~~lr~fa~~~gi~~f~d~~~~~n~~~~Ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~G 208 (473)
+.++||.++.++....++++.+++|++++++. || |||+|||||++.+ +++||+++||+|||||++|
T Consensus 439 v~~~dh~~~~~~~~~~e~~~~~~~Fa~~~g~~-~~-----------~pg~GI~Hq~l~~--~~~PG~~ivGtDSHT~~~~ 504 (865)
T 1l5j_A 439 MQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGV-SL-----------RPGDGVIHSWLNR--MLLPDTVGTGGDSHTRFPI 504 (865)
T ss_dssp EECCCSSSSSCCHHHHHHHHHHHHHHHTTTCE-EC-----------CTTSBCHHHHHGG--GCCTTCEEEESSTTCCCSS
T ss_pred EEECCCCCcCCCHHHHHHHHHHHHHHHHcCCe-Ee-----------CCCCceeeeeecc--cccccceEEeCCCCccccc
Confidence 99999999999999999999999999999984 44 5789999998753 9999999999999999999
Q ss_pred cccceecCCChhHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHHHHH------hhc------cCCCceEEEE
Q 012009 209 AFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGE------ISV------AGATYKSMEF 276 (473)
Q Consensus 209 alGala~GvG~td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ii~~------l~~------~G~~~~~vEF 276 (473)
| +|+|.|++|++.+|+||++|+++||+|+|+|+|+|++||++|||||+|++. |++ ++++|++|||
T Consensus 505 G---lg~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~vEf 581 (865)
T 1l5j_A 505 G---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI 581 (865)
T ss_dssp S---EECCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEEE
T ss_pred c---ceeCccHHHHHHHHHcCceeecCCCEEEEEEEeeCCCCCChHHHHHHHHHHHHhcccccccccCcccceeeEEEEE
Confidence 6 567889999999999999999999999999999999999999999999643 433 5668999999
Q ss_pred eccccccCChhhhhhhhhcccccCceeeeccCC-hhHHHHhhh----------cCCC-------------C----Ccccc
Q 012009 277 VGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD-GTTFKYLED----------KTSL-------------P----YEPVY 328 (473)
Q Consensus 277 ~G~gv~~Ls~d~R~Ti~NMa~E~GA~~gif~~D-~~t~~YL~~----------r~~~-------------~----~~~l~ 328 (473)
+|+++||+++|||||||++|+||++|+||+| ++|++||+. +++. + +..++
T Consensus 582 --~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~l~ 659 (865)
T 1l5j_A 582 --EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLE 659 (865)
T ss_dssp --ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred --cccccCChhhhhhHhhcchhcCCeeEEEeCCHHHHHHHHHhhhhhhhhhhccCCccchhHHHHHHHHHHHHhccceec
Confidence 4799999999999999999999999999976 888999998 3531 1 23488
Q ss_pred cCCCCeecEEEEEECCCc-ceeeecCCCCCccccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCccc--ceeE
Q 012009 329 SDEKASFLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTF 405 (473)
Q Consensus 329 sD~dA~Y~~~i~iDLs~l-eP~VA~P~sPdn~~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--V~~~ 405 (473)
+|+||.|+++++||||+| ||+||+|++|+|+.+++|+++.+||+||||||||+ ++||++||+||| |++++ |+++
T Consensus 660 ~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse~~~~~Id~v~IGSCTtn-~eDl~~AA~ilk--g~~v~~~v~~~ 736 (865)
T 1l5j_A 660 ADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCMTN-IGHFRAAGKLLD--AHKGQLPTRLW 736 (865)
T ss_dssp CCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTTTCBCCEEEECSTTCC-HHHHHHHHHHHH--HSCSCCSSEEE
T ss_pred cCCCCcEEEEEEEEcccCCCCEecCCCChHhccchhhhcccccceEEEecCCCC-HHHHHHHHHHHc--CcccCCCCCEE
Confidence 999999999999999999 89999999999999999999999999999999888 999999999999 55554 9999
Q ss_pred EecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccccCCCCCccccCCCCCccccCCCCCEEEeecCC
Q 012009 406 LVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMASLCLHDK 473 (473)
Q Consensus 406 V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge~~iSTsn~ 473 (473)
|+|+|++|+.+++++ |++++|.+|||.| .+||||+|+|++ +++++||+|+||+|.
T Consensus 737 V~PgS~~V~~~l~~e--------Gl~~~l~~aGa~v-~~pgCg~CiGn~----~~~~~ge~~isTsNR 791 (865)
T 1l5j_A 737 VAPPTRMDAAQLTEE--------GYYSVFGKSGARI-EIPGCSLCMGNQ----ARVADGATVVSTSTR 791 (865)
T ss_dssp ECCSBHHHHHHHHHT--------THHHHHHHHTCEE-CCSSCGGGTCSS----SCCCTTCEEEESSSC
T ss_pred EECCCHHHHHHHHHc--------CcHHHHHHcCCEE-cCCccccccCcC----CcCCCCCEEEecCCc
Confidence 999999999999986 5899999999999 599999999985 468999999999994
No 4
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=37.67 E-value=3.6 Score=35.45 Aligned_cols=32 Identities=25% Similarity=0.529 Sum_probs=25.0
Q ss_pred EEecCCCCChHHHHHHHHHHHhcCCccc---------ceeEEecc
Q 012009 374 YIGSCTGGKTEDFLAAAKVFLASGKKVK---------VPTFLVPA 409 (473)
Q Consensus 374 ~IGSCTngr~eDl~~AA~iL~~~G~kv~---------V~~~V~Pa 409 (473)
|.||||=- +||+.||.||. +-||. ..++++|+
T Consensus 25 Y~GSitID--~~Ll~aA~i~~--~E~V~I~NvnNG~Rf~TYvI~G 65 (114)
T 3oug_A 25 YVGSITID--SEIMKQANIIE--NEKVQVVNLNNGERLETYVIKG 65 (114)
T ss_dssp CC-CEEEE--HHHHHHTTCCT--TBEEEEEETTTCCEEEEEEEEE
T ss_pred ccceEEEC--HHHHHHcCCCc--CCEEEEEECCCCceEEEEEEEc
Confidence 99999986 89999999999 77774 34667773
No 5
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=31.87 E-value=4.4 Score=36.03 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.4
Q ss_pred EEecCCCCChHHHHHHHHHHHhcCCccc
Q 012009 374 YIGSCTGGKTEDFLAAAKVFLASGKKVK 401 (473)
Q Consensus 374 ~IGSCTngr~eDl~~AA~iL~~~G~kv~ 401 (473)
|.||||=- +||+.||.||. +-||.
T Consensus 22 Y~GSITID--~dLldaAgIl~--~EkV~ 45 (139)
T 2c45_A 22 YVGSVTID--ADLMDAADLLE--GEQVT 45 (139)
T ss_dssp SCCEEEEE--HHHHHHTTCCS--SCCEE
T ss_pred cceeeEEC--HHHHHHcCCCC--CCEEE
Confidence 89999986 89999999999 77774
No 6
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=28.31 E-value=6.4 Score=35.14 Aligned_cols=32 Identities=31% Similarity=0.641 Sum_probs=26.2
Q ss_pred EEecCCCCChHHHHHHHHHHHhcCCccc---------ceeEEecc
Q 012009 374 YIGSCTGGKTEDFLAAAKVFLASGKKVK---------VPTFLVPA 409 (473)
Q Consensus 374 ~IGSCTngr~eDl~~AA~iL~~~G~kv~---------V~~~V~Pa 409 (473)
|.||||=- +||+.||.||. +-||. ..++++|+
T Consensus 39 Y~GSITID--~dLldaAgIl~--~EkV~IvNvnNG~RfeTYvI~G 79 (143)
T 1pqh_A 39 YEGTCAID--QDFLDAAGILE--NEAIDIWNVTNGKRFSTYAIAA 79 (143)
T ss_dssp SCCCEEEE--HHHHHHHTCCT--TCEEEEEETTTCCEEEEEEEEE
T ss_pred cceeEEEC--HHHHHHcCCCC--CCEEEEEECCCCceEEEEEEEc
Confidence 99999986 89999999999 77774 34667773
No 7
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=22.16 E-value=1.3e+02 Score=23.62 Aligned_cols=40 Identities=8% Similarity=-0.242 Sum_probs=33.1
Q ss_pred HHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHHH
Q 012009 221 DAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI 260 (473)
Q Consensus 221 d~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~i 260 (473)
+++..+---|-|.-....|.|+|+-.=..|++.+|++|+-
T Consensus 33 ~~Ae~~~HHPdi~~~y~~V~v~l~THd~gGlt~~D~~lA~ 72 (80)
T 1usm_A 33 ALAERENHHPRLTVEWGRVTVEWWTHSAGGVTEKDREMAR 72 (80)
T ss_dssp HHHHHHTCCCEEEEETTEEEEEECBTTTTBCCHHHHHHHH
T ss_pred HHHHHhCCCCcEEEeCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 4555666678888889999999988778899999999874
No 8
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=20.51 E-value=1.2e+02 Score=25.95 Aligned_cols=65 Identities=18% Similarity=0.165 Sum_probs=37.8
Q ss_pred ccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCcccceeEEecchHHHHHHhhcCCCCCCCCccHHHHHHHcCccc
Q 012009 362 ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDT 441 (473)
Q Consensus 362 v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~V~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~l~~AGa~i 441 (473)
+.|+.. ++|.++| |+.. +....+++-+.++|.+ .+++.++.. . +-+.+...++|..+
T Consensus 71 l~~l~~-~vDlvvi--~vp~--~~~~~vv~~~~~~gi~---~i~~~~g~~------~---------~~l~~~a~~~Gi~v 127 (144)
T 2d59_A 71 VLDIPD-KIEVVDL--FVKP--KLTMEYVEQAIKKGAK---VVWFQYNTY------N---------REASKKADEAGLII 127 (144)
T ss_dssp GGGCSS-CCSEEEE--CSCH--HHHHHHHHHHHHHTCS---EEEECTTCC------C---------HHHHHHHHHTTCEE
T ss_pred HHHcCC-CCCEEEE--EeCH--HHHHHHHHHHHHcCCC---EEEECCCch------H---------HHHHHHHHHcCCEE
Confidence 444443 6999998 4554 4444444333334543 235556542 1 12678899999998
Q ss_pred cCCCCCccc
Q 012009 442 PASPSCGAC 450 (473)
Q Consensus 442 ~~~pgCg~C 450 (473)
++|.|-.+
T Consensus 128 -vGpnc~gv 135 (144)
T 2d59_A 128 -VANRCMMR 135 (144)
T ss_dssp -EESCCHHH
T ss_pred -EcCCchhh
Confidence 68887543
No 9
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=19.97 E-value=1.2e+02 Score=24.68 Aligned_cols=40 Identities=8% Similarity=-0.043 Sum_probs=34.4
Q ss_pred hHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHH
Q 012009 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQ 259 (473)
Q Consensus 220 td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ 259 (473)
.+++..+---+-|.-....|.|+|+=.=..|++.+|++|+
T Consensus 50 a~~Ae~~~HHPdi~~~y~~V~v~l~THd~gGlT~~D~~lA 89 (97)
T 3jst_A 50 ALYAEKLDHHPEWFNAYNRVDVTLATHSENGVTELDIKMA 89 (97)
T ss_dssp HHHHHHHTCCCEEEEETTEEEEEECBGGGTBCCHHHHHHH
T ss_pred HHHHHHhCCCCeEEEeCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 3566677777889999999999998888889999999986
No 10
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=16.94 E-value=1.8e+02 Score=24.02 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=34.7
Q ss_pred hHHHHHHccceEEeecCCeeeEEEEccCCCCCCHHHHHHH
Q 012009 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQ 259 (473)
Q Consensus 220 td~a~~l~tg~~~~kvPetv~V~l~G~l~~gV~aKDliL~ 259 (473)
.+++..+---+-|.-....|.|+|+=.=..|++.+|++|+
T Consensus 54 a~~AE~~~HHPdi~~~y~~V~v~l~THd~gGlT~~D~~lA 93 (104)
T 3hxa_A 54 ALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLA 93 (104)
T ss_dssp HHHHHHHTCCCEEEEETTEEEEEECBTTTTBCCHHHHHHH
T ss_pred HHHHHHhCCCCeEEEeCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 3566677777889889999999999888899999999987
Done!