RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012009
(473 letters)
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 490
Score = 252 bits (644), Expect = 5e-79
Identities = 73/425 (17%), Positives = 128/425 (30%), Gaps = 69/425 (16%)
Query: 69 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 128
+L +K+ RA + PG + + + D GP + K + + +
Sbjct: 10 FSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKD---LACLGFSADLV 66
Query: 129 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 188
+ H L DF M + GV H L
Sbjct: 67 MQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLR------------PGDGVIHSWL--N 112
Query: 189 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 248
P V G DSHT G+ F TG + L +P ++ G+M
Sbjct: 113 RMLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQ 169
Query: 249 DYLLAKDLILQIIGEISVAGAT----------YKSMEFVGTTVERLSMEERMTLCNMVVE 298
+ +DL+ I G + + L +E+ L + E
Sbjct: 170 PGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAE 229
Query: 299 AGGKNGVVPA-DGTTFKYLEDKTSLPY---------------------------EPVYSD 330
+ +YL L E + +D
Sbjct: 230 RSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEAD 289
Query: 331 EKASFLSEYRFDISKLEP-LVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAA 389
A + + D++ ++ ++ P+ PD+ + KID V+IGSC F AA
Sbjct: 290 ADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCM-TNIGHFRAA 348
Query: 390 AKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGA 449
K+ A ++ ++ P T+ + + +F ++G P C
Sbjct: 349 GKLLDAHKGQLPTRLWVAPPTRMDAAQLTE--------EGYYSVFGKSGARI-EIPGCSL 399
Query: 450 CLGGP 454
C+G
Sbjct: 400 CMGNQ 404
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
taurus) [TaxId: 9913]}
Length = 527
Score = 190 bits (484), Expect = 3e-55
Identities = 97/418 (23%), Positives = 154/418 (36%), Gaps = 39/418 (9%)
Query: 69 MTLTEKIFSR----ASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWD 124
+TL+EKI + + + + D + D + F KV
Sbjct: 35 LTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS--SGLPKVAV 92
Query: 125 REKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIA 184
I DH I +++ +D E G P + I
Sbjct: 93 PSTIHC--DHLIEA-QLGGEKDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQII 149
Query: 185 LAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLD 244
L E + PG +L+GTDSHT G G G+G DA V+ LK P + L
Sbjct: 150 L--ENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLT 207
Query: 245 GEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNG 304
G + + KD+IL++ G ++V G T +E+ G V+ +S T+CNM E G
Sbjct: 208 GSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTS 267
Query: 305 VVPADGTTFKYLE--------DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP 356
V P + KYL + + + D + ++S+L+P + P +P
Sbjct: 268 VFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHINGPFTP 327
Query: 357 DNR--------ALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVF---LASGKKVKVPTF 405
D +E + I IGSCT ED +A V LA G K K
Sbjct: 328 DLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFT 387
Query: 406 LVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNE 463
+ P ++++ + +Q+ + G A +CG C+G + E
Sbjct: 388 ITPGSEQIRATIE--------RDGYAQVLRDVGGIVLA-NACGPCIGQWDRKDIKKGE 436
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein
1, N-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 629
Score = 187 bits (476), Expect = 2e-53
Identities = 67/430 (15%), Positives = 127/430 (29%), Gaps = 77/430 (17%)
Query: 113 KKEFGENAKVWDREKIVIIPDHYI----FTSDERANRNVDI--------LRDFCMEQNIK 160
KK G+ K+ ++ DH I + +N D+
Sbjct: 104 KKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAF 163
Query: 161 YFYDIKDLGNFKANPDYKG-VCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 219
+ I G+ + + + Q+G+ + L+GTDSHT G G+G
Sbjct: 164 HNMRIIPPGSGIIHQVNLEYLARVVFDQDGYY-YPDSLVGTDSHTTMIDGLGILGWGVGG 222
Query: 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGT 279
+A V+ + + +P + + L G+ + + D++L I + G K +EF G
Sbjct: 223 IEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGP 282
Query: 280 TVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYL----------------EDKTSLP 323
V +LS+ +R T+ NM E G P D + YL +
Sbjct: 283 GVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMF 342
Query: 324 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC------------------ 365
+ + F D+ + P + P P ++ +
Sbjct: 343 RDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQ 402
Query: 366 ---------------------KDVKIDRVYIGSCTGGKTEDFLAAAKVF----LASGKKV 400
+ I SCT + A + + +G V
Sbjct: 403 VAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNV 462
Query: 401 K--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTY 458
+ T L P + V + V + + + G +
Sbjct: 463 MPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVG--YGCMTCIGNSGPLPEPVVEAI 520
Query: 459 ARMNEPMASL 468
+ + +
Sbjct: 521 TQGDLVAVGV 530
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 27.6 bits (60), Expect = 3.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 324 YEPVYSDEKASFLSEYRFD 342
+ P+Y+ +SF Y FD
Sbjct: 270 FSPIYTGNISSFQQCYIFD 288
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
[TaxId: 562]}
Length = 620
Score = 27.2 bits (59), Expect = 4.8
Identities = 3/41 (7%), Positives = 15/41 (36%)
Query: 112 FKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRD 152
+ W+ + I+P+ + + +++++
Sbjct: 50 QPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKR 90
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 6
{Streptomyces antibioticus [TaxId: 1890]}
Length = 54
Score = 24.6 bits (54), Expect = 5.3
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 424 GSGGKTCSQIFEEAGCD 440
G + +QI E+ G +
Sbjct: 19 GPKRQMINQIQEDTGAE 35
>d3d31a1 b.40.6.3 (A:230-348) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 119
Score = 25.8 bits (56), Expect = 5.4
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 65 VKNAMTLTEKIFSRASEKPQLSPGDNVWVNVD 96
V + L I R++E+ +LSPG ++
Sbjct: 80 VDCGVPLNVLITRRSAEEMELSPGVQIYARFK 111
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 26.2 bits (57), Expect = 5.9
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 373 VYIGSCTGGKTEDFLAAAKVFLASGKKVKV 402
V +G GK+ + + + F + K V
Sbjct: 6 VILGPMFSGKSTELMRRVRRFQIAQYKCLV 35
>d1dzfa1 c.52.3.1 (A:5-143) Eukaryotic RPB5 N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 139
Score = 26.0 bits (57), Expect = 6.8
Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 108 SFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRD---FCMEQNIKYFYD 164
FK ++ ++ R+ + + ++E ++ D+ FC E ++
Sbjct: 34 PLEDFKAKYCDSMGRPQRKMMSFQANP----TEESISKFPDMGSLWVEFCDEPSVG---- 85
Query: 165 IKDLGNF 171
+K + F
Sbjct: 86 VKTMKTF 92
>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 91
Score = 25.0 bits (55), Expect = 7.1
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 350 VAKPHSPDNRALARECKDVK-IDRVYI 375
V KPH P A + +++ +D V I
Sbjct: 11 VLKPHEPKTIVFALKLSELENVDGVNI 37
>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 93
Score = 25.0 bits (55), Expect = 7.2
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 350 VAKPHSPDNRALARECKDVK-IDRVYI 375
+ KPH P A+ +++ ++ V I
Sbjct: 11 ILKPHEPIIPEYAKYLSELRGVEGVNI 37
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase
C-terminal domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 196
Score = 26.3 bits (57), Expect = 7.8
Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 14/130 (10%)
Query: 99 MTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQN 158
+H + S KK+ + V K++ + ++ R+
Sbjct: 61 WSHPILSQLSLDEAKKQITDTEDVL--TKVLGSSSKLMRPPYGAITDDI---RNSLDLSF 115
Query: 159 IKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIG 218
I + D D + + H G ++L D H+ T A + +
Sbjct: 116 IMWDVDSLDWKSKNEASILTEIQH-------QVANGSIVLMHDIHSPTVNALPRVIEYL- 167
Query: 219 NTDAGFVLGT 228
+ G+ T
Sbjct: 168 -KNQGYTFVT 176
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.405
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,790,394
Number of extensions: 87143
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 13
Length of query: 473
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 384
Effective length of database: 1,185,626
Effective search space: 455280384
Effective search space used: 455280384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)