Query 012010
Match_columns 473
No_of_seqs 393 out of 2829
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:39:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 2.2E-69 4.7E-74 563.2 35.0 382 2-436 195-578 (727)
2 KOG0500 Cyclic nucleotide-gate 100.0 2.9E-53 6.2E-58 411.8 31.0 321 13-392 102-425 (536)
3 PLN03192 Voltage-dependent pot 100.0 7.2E-51 1.6E-55 448.9 37.0 301 35-404 196-499 (823)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 1.7E-45 3.8E-50 361.2 18.5 346 13-409 329-676 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 4.3E-44 9.2E-49 352.5 22.0 285 37-392 359-643 (815)
6 PRK09392 ftrB transcriptional 99.6 5.8E-15 1.3E-19 139.9 15.2 128 268-405 6-133 (236)
7 PRK11753 DNA-binding transcrip 99.6 5.3E-14 1.1E-18 130.9 16.5 118 278-404 6-124 (211)
8 cd00038 CAP_ED effector domain 99.5 1.2E-13 2.6E-18 114.3 13.1 108 276-392 1-109 (115)
9 PF00027 cNMP_binding: Cyclic 99.5 1.9E-13 4.1E-18 108.8 10.1 90 294-392 1-91 (91)
10 PRK10402 DNA-binding transcrip 99.5 2.3E-13 4.9E-18 128.2 11.7 110 284-403 23-133 (226)
11 PRK11161 fumarate/nitrate redu 99.5 5.6E-13 1.2E-17 126.3 13.8 122 271-403 15-138 (235)
12 smart00100 cNMP Cyclic nucleot 99.4 3.4E-12 7.5E-17 106.1 15.2 110 276-392 1-111 (120)
13 COG0664 Crp cAMP-binding prote 99.4 3.3E-12 7.2E-17 118.4 16.1 124 273-406 4-128 (214)
14 KOG0614 cGMP-dependent protein 99.3 1.3E-12 2.8E-17 129.5 6.9 124 265-398 268-394 (732)
15 COG2905 Predicted signal-trans 99.3 1.1E-11 2.3E-16 124.7 12.9 122 268-402 6-127 (610)
16 PRK09391 fixK transcriptional 99.3 1.7E-11 3.7E-16 115.7 12.4 105 287-404 33-138 (230)
17 KOG1113 cAMP-dependent protein 99.3 5.5E-12 1.2E-16 119.9 7.8 112 267-391 120-231 (368)
18 PLN02868 acyl-CoA thioesterase 99.3 3.2E-11 7E-16 123.6 13.8 113 269-392 8-120 (413)
19 TIGR03697 NtcA_cyano global ni 99.3 2.5E-11 5.5E-16 111.1 11.4 96 300-404 1-98 (193)
20 PRK13918 CRP/FNR family transc 99.2 1E-10 2.2E-15 108.0 12.4 83 291-383 5-90 (202)
21 KOG0614 cGMP-dependent protein 99.2 3E-11 6.5E-16 120.0 7.5 118 262-392 147-264 (732)
22 KOG1113 cAMP-dependent protein 99.0 1.3E-09 2.9E-14 103.9 8.2 118 263-392 234-351 (368)
23 PF07885 Ion_trans_2: Ion chan 98.8 2E-08 4.4E-13 77.9 8.2 53 145-198 24-78 (79)
24 KOG3713 Voltage-gated K+ chann 98.5 3.3E-07 7.2E-12 91.7 7.7 54 148-202 380-435 (477)
25 PF00520 Ion_trans: Ion transp 98.4 1.2E-06 2.7E-11 79.8 8.9 54 139-193 139-200 (200)
26 KOG2968 Predicted esterase of 98.2 2.6E-06 5.5E-11 90.2 6.7 112 283-404 499-611 (1158)
27 KOG1545 Voltage-gated shaker-l 97.7 2.9E-06 6.2E-11 81.2 -2.6 46 146-192 394-441 (507)
28 PRK10537 voltage-gated potassi 97.7 0.0002 4.4E-09 72.5 10.0 52 145-197 168-221 (393)
29 KOG2968 Predicted esterase of 97.6 0.00027 5.9E-09 75.3 9.7 102 288-392 111-214 (1158)
30 KOG1419 Voltage-gated K+ chann 97.6 0.00055 1.2E-08 69.5 11.1 88 141-236 265-354 (654)
31 PRK11832 putative DNA-binding 97.4 0.0048 1E-07 56.3 13.7 96 284-391 14-110 (207)
32 KOG1420 Ca2+-activated K+ chan 97.2 0.00035 7.5E-09 70.9 4.4 63 144-207 287-351 (1103)
33 KOG4390 Voltage-gated A-type K 97.2 6.3E-05 1.4E-09 72.8 -0.9 55 144-199 355-415 (632)
34 KOG3684 Ca2+-activated K+ chan 97.1 0.0096 2.1E-07 59.6 13.7 89 143-240 285-375 (489)
35 PF04831 Popeye: Popeye protei 96.9 0.029 6.4E-07 48.1 12.6 105 280-392 15-121 (153)
36 KOG1418 Tandem pore domain K+ 96.7 0.0021 4.5E-08 66.1 5.2 55 145-200 115-171 (433)
37 PF01007 IRK: Inward rectifier 96.7 0.0057 1.2E-07 60.6 7.7 55 144-199 83-141 (336)
38 KOG3542 cAMP-regulated guanine 96.6 0.0051 1.1E-07 63.9 6.7 114 266-392 278-393 (1283)
39 KOG4404 Tandem pore domain K+ 94.7 0.19 4.1E-06 48.4 9.0 60 145-204 186-254 (350)
40 KOG3827 Inward rectifier K+ ch 94.4 0.13 2.8E-06 50.7 7.2 54 145-199 112-169 (400)
41 KOG3542 cAMP-regulated guanine 93.5 0.098 2.1E-06 54.7 4.7 90 269-379 37-126 (1283)
42 KOG4404 Tandem pore domain K+ 92.7 0.039 8.4E-07 53.0 0.4 55 141-196 76-132 (350)
43 KOG1418 Tandem pore domain K+ 85.5 0.32 6.8E-06 49.8 0.7 46 144-190 241-296 (433)
44 KOG0500 Cyclic nucleotide-gate 81.9 6.4 0.00014 40.4 8.1 206 12-322 98-348 (536)
45 PLN03223 Polycystin cation cha 81.0 30 0.00065 40.3 13.6 48 172-219 1397-1444(1634)
46 PF08006 DUF1700: Protein of u 80.5 12 0.00027 33.5 9.0 57 208-266 4-64 (181)
47 COG4709 Predicted membrane pro 79.6 13 0.00029 33.2 8.4 73 208-282 4-80 (195)
48 PF07883 Cupin_2: Cupin domain 75.5 13 0.00028 27.0 6.5 45 295-344 3-48 (71)
49 PRK13290 ectC L-ectoine syntha 67.4 35 0.00076 28.6 7.9 68 293-378 38-106 (125)
50 PF05899 Cupin_3: Protein of u 64.8 12 0.00026 28.1 4.1 42 298-345 15-56 (74)
51 KOG2302 T-type voltage-gated C 62.2 2.4E+02 0.0053 32.2 14.5 21 177-197 1368-1388(1956)
52 PF14377 DUF4414: Domain of un 61.6 15 0.00033 29.9 4.5 44 222-265 52-105 (108)
53 PF13314 DUF4083: Domain of un 61.2 45 0.00098 23.7 6.0 41 177-220 14-57 (58)
54 smart00835 Cupin_1 Cupin. This 60.3 32 0.00069 29.5 6.6 55 291-345 31-87 (146)
55 PRK04190 glucose-6-phosphate i 57.5 56 0.0012 29.7 7.8 53 292-344 70-131 (191)
56 TIGR03037 anthran_nbaC 3-hydro 55.6 50 0.0011 29.0 6.8 51 292-344 29-81 (159)
57 TIGR03404 bicupin_oxalic bicup 54.7 38 0.00083 34.2 6.9 53 292-344 69-121 (367)
58 COG0662 {ManC} Mannose-6-phosp 52.8 52 0.0011 27.5 6.5 48 291-343 37-85 (127)
59 PF07697 7TMR-HDED: 7TM-HD ext 52.3 97 0.0021 28.3 8.9 59 252-311 146-207 (222)
60 PF00060 Lig_chan: Ligand-gate 52.2 28 0.00061 29.5 4.9 75 141-221 40-115 (148)
61 TIGR03404 bicupin_oxalic bicup 48.1 60 0.0013 32.8 7.2 52 292-343 247-299 (367)
62 PF02037 SAP: SAP domain; Int 44.1 52 0.0011 20.7 3.9 26 210-235 5-35 (35)
63 PRK13264 3-hydroxyanthranilate 44.0 90 0.0019 27.9 6.7 50 293-344 36-87 (177)
64 KOG2378 cAMP-regulated guanine 43.4 22 0.00048 36.2 3.1 45 339-392 1-46 (573)
65 PRK14762 membrane protein; Pro 42.1 34 0.00073 19.7 2.4 24 1-24 1-24 (27)
66 PF14377 DUF4414: Domain of un 40.8 75 0.0016 25.8 5.4 48 222-269 8-68 (108)
67 PF08285 DPM3: Dolichol-phosph 40.3 1.8E+02 0.004 22.9 9.4 42 183-224 46-90 (91)
68 KOG0501 K+-channel KCNQ [Inorg 39.3 2E+02 0.0043 30.7 9.2 49 251-299 499-552 (971)
69 KOG3676 Ca2+-permeable cation 36.7 6.4E+02 0.014 28.1 14.2 70 160-230 605-680 (782)
70 KOG0498 K+-channel ERG and rel 35.9 2.5E+02 0.0054 31.2 9.8 41 252-292 371-416 (727)
71 KOG3609 Receptor-activated Ca2 35.5 3.4E+02 0.0073 30.3 10.6 51 12-63 476-531 (822)
72 COG1917 Uncharacterized conser 34.6 93 0.002 25.9 5.3 49 292-345 45-94 (131)
73 TIGR00870 trp transient-recept 32.7 7.3E+02 0.016 27.6 15.5 49 13-62 480-529 (743)
74 PF00190 Cupin_1: Cupin; Inte 31.8 1.1E+02 0.0024 26.0 5.5 54 292-345 36-96 (144)
75 COG3718 IolB Uncharacterized e 31.7 1.6E+02 0.0035 27.5 6.4 78 292-382 31-112 (270)
76 PF12973 Cupin_7: ChrR Cupin-l 30.2 2.2E+02 0.0048 21.9 6.4 64 291-377 25-88 (91)
77 PRK11171 hypothetical protein; 29.9 2.2E+02 0.0047 27.3 7.6 48 292-344 63-112 (266)
78 PRK06771 hypothetical protein; 29.9 2.8E+02 0.0061 21.9 6.7 38 183-220 11-48 (93)
79 PF00520 Ion_trans: Ion transp 29.0 1.1E+02 0.0024 26.8 5.2 52 15-67 72-123 (200)
80 KOG3193 K+ channel subunit [In 28.4 17 0.00038 37.7 -0.3 22 146-167 218-241 (1087)
81 COG2140 Thermophilic glucose-6 27.0 2.2E+02 0.0048 26.1 6.5 33 311-343 104-136 (209)
82 PF14841 FliG_M: FliG middle d 27.0 1.1E+02 0.0024 23.2 4.1 39 248-294 30-68 (79)
83 PRK12721 secretion system appa 26.5 1.9E+02 0.0042 29.0 6.7 64 170-233 176-239 (349)
84 PF08016 PKD_channel: Polycyst 26.3 2.5E+02 0.0054 28.8 7.8 18 12-29 307-324 (425)
85 PRK11171 hypothetical protein; 25.0 2.4E+02 0.0052 27.0 6.9 49 291-344 185-234 (266)
86 PF12983 DUF3867: Protein of u 24.7 2.2E+02 0.0048 25.2 5.8 24 138-165 16-39 (186)
87 PF13623 SurA_N_2: SurA N-term 24.2 2.9E+02 0.0062 23.8 6.5 44 176-219 10-66 (145)
88 PRK09108 type III secretion sy 24.1 2.3E+02 0.0049 28.5 6.7 63 170-232 178-240 (353)
89 PLN03192 Voltage-dependent pot 24.0 1.1E+03 0.023 26.7 14.2 40 252-291 327-370 (823)
90 PHA02909 hypothetical protein; 23.6 1.5E+02 0.0032 20.8 3.6 25 41-65 38-62 (72)
91 PRK11677 hypothetical protein; 23.0 4.7E+02 0.01 22.2 7.9 27 204-236 31-57 (134)
92 PRK13109 flhB flagellar biosyn 22.2 2.6E+02 0.0056 28.1 6.7 63 170-232 185-247 (358)
93 cd07313 terB_like_2 tellurium 22.2 3.9E+02 0.0084 20.9 9.0 63 209-271 19-84 (104)
94 PF11699 CENP-C_C: Mif2/CENP-C 22.1 1.4E+02 0.003 23.2 3.7 29 311-344 34-62 (85)
95 TIGR01404 FlhB_rel_III type II 22.0 2.6E+02 0.0057 27.9 6.7 64 170-233 175-238 (342)
96 COG5559 Uncharacterized conser 21.5 1.6E+02 0.0034 21.1 3.4 22 220-241 8-29 (65)
97 PF01484 Col_cuticle_N: Nemato 21.5 2.7E+02 0.0059 18.8 6.2 40 173-212 8-47 (53)
98 smart00511 ORANGE Orange domai 21.4 2.5E+02 0.0055 18.5 5.8 37 204-240 4-41 (45)
99 COG3257 GlxB Uncharacterized p 21.4 5.4E+02 0.012 23.9 7.8 61 301-380 74-136 (264)
100 COG4325 Predicted membrane pro 21.3 5.4E+02 0.012 26.1 8.3 62 138-202 125-193 (464)
101 PF13867 SAP30_Sin3_bdg: Sin3 21.1 2.1E+02 0.0045 19.9 4.1 37 211-252 3-46 (53)
102 PHA00672 hypothetical protein 20.8 5.1E+02 0.011 21.7 6.9 34 291-325 48-81 (152)
103 smart00513 SAP Putative DNA-bi 20.6 1.4E+02 0.003 18.6 2.9 24 211-234 6-34 (35)
104 TIGR00328 flhB flagellar biosy 20.5 3E+02 0.0065 27.6 6.7 63 170-232 176-238 (347)
105 PRK08156 type III secretion sy 20.4 3.1E+02 0.0067 27.7 6.7 63 170-232 171-233 (361)
106 PRK09943 DNA-binding transcrip 20.3 3.2E+02 0.007 24.2 6.5 43 296-343 113-156 (185)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-69 Score=563.23 Aligned_cols=382 Identities=43% Similarity=0.802 Sum_probs=344.4
Q ss_pred cchhhHHHHHhhHHHHHHhhhhcccccccceeehhhhHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhHHHHhccCCCc
Q 012010 2 TVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGC 81 (473)
Q Consensus 2 ~~~~~~~~~~~l~rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~H~~aC~w~~ig~~~~~~~~~~~~~~~~~~ 81 (473)
+++..++++||++||.|+.++++++++..++..+++|+..+++++.+++++||.||+||++|..+...||+.+
T Consensus 195 ~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~------- 267 (727)
T KOG0498|consen 195 TILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA------- 267 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc-------
Confidence 3688899999999999999999999999999999999998899999999999999999999999998887643
Q ss_pred ceeeeecCCCcccCccccccchhhhhhhhccccccccccCCCCcccccchhhhhhccCcchHHHHHHHHHHHhhhccc--
Q 012010 82 DLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLST-- 159 (473)
Q Consensus 82 ~~~~~~~~~~~~y~~~~~~~~~~~~~W~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~slYwai~t~tt-- 159 (473)
+|.........|- ...+.||.+ +++.+|++|+||+++||||
T Consensus 268 -------------------------tw~~~l~~~~~~~--~~~~~fg~~----------s~~~kY~~aLyw~l~tLstvG 310 (727)
T KOG0498|consen 268 -------------------------TWLGSLGRLLSCY--NLSFTFGIY----------SLALKYVYALYWGLSTLSTVG 310 (727)
T ss_pred -------------------------ccccccccccccC--cccccccch----------hHHHHHHHHHHHHhhHhhhcc
Confidence 2332211000122 122455554 6667999999999999999
Q ss_pred cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 012010 160 FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRW 239 (473)
Q Consensus 160 yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~rv~~y~~~~~ 239 (473)
|||++|.+. .|++|+|++|++|.++||++||||+++++..+.+..+|+.|+.++++||+++++|++||+||++|++|+|
T Consensus 311 ~g~~~s~~~-~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw 389 (727)
T KOG0498|consen 311 YGLVHANNM-GEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKW 389 (727)
T ss_pred CCccCCCCc-HHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 999999986 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHhhCCHHHHHHHHHHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEee
Q 012010 240 AAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRG 319 (473)
Q Consensus 240 ~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G 319 (473)
..++|+||+++|+.||+.||.+|..+++.++++++|+|+++|++++++|+.++++..|+|||+|++|||..++||||.+|
T Consensus 390 ~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG 469 (727)
T KOG0498|consen 390 LATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRG 469 (727)
T ss_pred hhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHH
Q 012010 320 HLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKV 399 (473)
Q Consensus 320 ~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~ 399 (473)
.+++...+.+|......+++||+|||..++++.. .|++.+|+|+|.|+++.|++++|..++++||+ ++++++
T Consensus 470 ~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~-------~p~t~TVralt~~el~~L~~~dL~~V~~~f~~-~~~~~l 541 (727)
T KOG0498|consen 470 SLESITTDGGGFFVVAILGPGDFFGEELLTWCLD-------LPQTRTVRALTYCELFRLSADDLKEVLQQFRR-LGSKFL 541 (727)
T ss_pred eEEEEEccCCceEEEEEecCCCccchHHHHHHhc-------CCCCceeehhhhhhHHhccHHHHHHHHHHhHH-HHHHHH
Confidence 9999876555555689999999999665656652 23488999999999999999999999999998 999999
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHHhhhhhhhhcc
Q 012010 400 KRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSF 436 (473)
Q Consensus 400 ~~~~~~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~~ 436 (473)
++.+++|+++|+.+.++++|.+|+++.+|+..+.+..
T Consensus 542 ~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~ 578 (727)
T KOG0498|consen 542 QHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELAL 578 (727)
T ss_pred HhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhhh
Confidence 9999999999999999999999999999887665543
No 2
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-53 Score=411.81 Aligned_cols=321 Identities=20% Similarity=0.328 Sum_probs=273.8
Q ss_pred hHHHHHHhhhhcccccccceeehhhhHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhHHHHhccCCCcceeeeecCCCc
Q 012010 13 LPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPI 92 (473)
Q Consensus 13 l~rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~H~~aC~w~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (473)
+.|++|+.|++.-+.....-...+..+++.++...++++.||-||++|+|+....-
T Consensus 102 ~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g~------------------------ 157 (536)
T KOG0500|consen 102 LNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAIGF------------------------ 157 (536)
T ss_pred HHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCc------------------------
Confidence 34555555544443333222223455678888889999999999999999642111
Q ss_pred ccCccccccchhhhhhhhc---cccccccccCCCCcccccchhhhhhccCcchHHHHHHHHHHHhhhccccCCcccccch
Q 012010 93 YYGTTDMVRDRARLAWAEN---KQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEW 169 (473)
Q Consensus 93 ~y~~~~~~~~~~~~~W~~~---~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~slYwai~t~ttyGdi~p~t~~ 169 (473)
+..+|.-. .+...+| ....+..+|+.|+||+..|+||-|+.+|+.+.
T Consensus 158 -----------~~d~wvY~~i~d~~~~~c-------------------~~~n~~ReY~~S~YWStLTlTTiGe~P~P~t~ 207 (536)
T KOG0500|consen 158 -----------TTDDWVYPKINDPEFATC-------------------DAGNLTREYLYSLYWSTLTLTTIGEQPPPVTS 207 (536)
T ss_pred -----------cccccccCCccCcccccc-------------------chhHHHHHHHHHHHHHhhhhhhccCCCCCCcC
Confidence 23336442 1111222 23557899999999999999999998776666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCHHH
Q 012010 170 LEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECE 249 (473)
Q Consensus 170 ~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~rv~~y~~~~~~~~~~~~~~~ 249 (473)
.|.+|.|+=.++|+++||.|+|+++++++++++.+.+|+.+|+.+++||+.+++|+.+|.||.+||.|.|.+++..+|++
T Consensus 208 ~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEee 287 (536)
T KOG0500|consen 208 SEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEE 287 (536)
T ss_pred chhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCHHHHHHHHHHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecC
Q 012010 250 MISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHN 329 (473)
Q Consensus 250 il~~Lp~~Lr~~i~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~ 329 (473)
+++.||+.|+.+|+.+++.+.|+++++|+++.+.++.+|+.+++++.|.|||+|.++||.+.+||+|.+|.+++.. +|
T Consensus 288 vl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~--dD 365 (536)
T KOG0500|consen 288 VLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVA--DD 365 (536)
T ss_pred HHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEe--cC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999954 78
Q ss_pred CceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 330 NIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 330 g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
|.++...+++|++|||++++.-.- -..+.+|++++++++.+++++|+++|+.+++++||+
T Consensus 366 g~t~~~~L~~G~~FGEisIlni~g---~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~ 425 (536)
T KOG0500|consen 366 GVTVFVTLKAGSVFGEISILNIKG---NKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPD 425 (536)
T ss_pred CcEEEEEecCCceeeeeEEEEEcC---cccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCH
Confidence 988899999999999997753111 113678999999999999999999999999999998
No 3
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=7.2e-51 Score=448.85 Aligned_cols=301 Identities=19% Similarity=0.309 Sum_probs=266.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhHHHHhccCCCcceeeeecCCCcccCccccccchhhhhhhhcccc
Q 012010 35 GTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQA 114 (473)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~H~~aC~w~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~W~~~~~~ 114 (473)
...+++++++++.+++++||+||+||++|..... .+.+|+...
T Consensus 196 ~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~-----------------------------------~~~~Wi~~~-- 238 (823)
T PLN03192 196 SYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPH-----------------------------------QGKTWIGAV-- 238 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----------------------------------CCCchHHHh--
Confidence 3456788899999999999999999999742211 334676531
Q ss_pred ccccccCCCCcccccchhhhhhccCcchHHHHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012010 115 RSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGN 192 (473)
Q Consensus 115 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~ 192 (473)
.++..+.+++.+|+.|+|||++|||| |||++|.|+ .|+++++++|++|+++|||+||+
T Consensus 239 -------------------~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~-~E~i~~i~~ml~g~~~~a~~ig~ 298 (823)
T PLN03192 239 -------------------IPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNT-IEMIFIIFYMLFNLGLTAYLIGN 298 (823)
T ss_pred -------------------hhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCcc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 12246789999999999999999999 999999986 99999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCHHHHHHHHHHHHHHHhh
Q 012010 193 IKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVR 272 (473)
Q Consensus 193 i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~ 272 (473)
+++++.+.+.+..+|+++++.+++||+++++|++||.||++|++++|+. +..+++++++.||++||.++..+++.+.++
T Consensus 299 i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~ 377 (823)
T PLN03192 299 MTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVE 377 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999986 457889999999999999999999999999
Q ss_pred cCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhh
Q 012010 273 QVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWC 351 (473)
Q Consensus 273 ~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~ 351 (473)
++++|+++|++++.+|+..++++.|+|||.|+.+||.++++|||.+|.|+++.. .+|++. +..+.+|++|||.+++
T Consensus 378 ~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~-~~~~e~~l~~l~~Gd~FGE~~~l-- 454 (823)
T PLN03192 378 KVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDS-EGEKERVVGTLGCGDIFGEVGAL-- 454 (823)
T ss_pred hCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEe-cCCcceeeEEccCCCEecchHHh--
Confidence 999999999999999999999999999999999999999999999999999753 344444 7899999999998775
Q ss_pred ccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012010 352 LRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSAR 404 (473)
Q Consensus 352 ~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~ 404 (473)
.+.++.++++|.++|+++.|++++|.++++++|+ .....++...+
T Consensus 455 -------~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~-d~~~i~~~~l~ 499 (823)
T PLN03192 455 -------CCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQE-DNVVILKNFLQ 499 (823)
T ss_pred -------cCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhH-HHHHHHHHHHH
Confidence 3566789999999999999999999999999999 55545555444
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-45 Score=361.23 Aligned_cols=346 Identities=20% Similarity=0.384 Sum_probs=290.1
Q ss_pred hHHHHHHhhhhcccccccceeehhhhHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhHHHHhccCCCcceeeeecCCCc
Q 012010 13 LPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPI 92 (473)
Q Consensus 13 l~rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~H~~aC~w~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (473)
+.||+|+.|+.|+++.+.++ +.+ .++.++..+.+++||+||+||.||..+.-. +.+
T Consensus 329 VVRLLRLGRVaRKLD~YlEY--GAA--~LvLLlC~y~lvAHWlACiWysIGd~ev~~-----------------~~~--- 384 (971)
T KOG0501|consen 329 VVRLLRLGRVARKLDHYLEY--GAA--VLVLLLCVYGLVAHWLACIWYSIGDYEVRD-----------------EMD--- 384 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hHH--HHHHHHHHHHHHHHHHHHhheeccchheec-----------------ccc---
Confidence 56999999999999988776 433 677788899999999999999999766531 111
Q ss_pred ccCccccccchhhhhhhhccccccccccCCCCcccccchhhhhhccCcchHHHHHHHHHHHhhhccc--cCCcccccchh
Q 012010 93 YYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLST--FGNLESTTEWL 170 (473)
Q Consensus 93 ~y~~~~~~~~~~~~~W~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~slYwai~t~tt--yGdi~p~t~~~ 170 (473)
+....++|.-+-...- ...|.|. .+..-.....+|-.+.|+.|+||.++.||| +|+|.|.|+ .
T Consensus 385 --------n~i~~dsWL~kLa~~~-----~tpY~~~-~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD-~ 449 (971)
T KOG0501|consen 385 --------NTIQPDSWLWKLANDI-----GTPYNYN-LSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTD-N 449 (971)
T ss_pred --------cccccchHHHHHHhhc-----CCCceec-cCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCcc-H
Confidence 1223445643211000 1111111 000011134566678999999999999999 999999997 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 012010 171 EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEM 250 (473)
Q Consensus 171 E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~rv~~y~~~~~~~~~~~~~~~i 250 (473)
|++|++++|++|+++||-|+|+++.|++++.++...|.+.++.+.+|||-+.+|+.|..||.+|.-..|...+|+|.+++
T Consensus 450 EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKV 529 (971)
T KOG0501|consen 450 EKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKV 529 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCHHHHHHHHHHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCC
Q 012010 251 ISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNN 330 (473)
Q Consensus 251 l~~Lp~~Lr~~i~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g 330 (473)
|+.-|.++|.+|+.|++++.+...|.|+-.|+..++.|+..++.....|||.|++.||..+.++||++|.+++.+ .
T Consensus 530 L~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQ----D 605 (971)
T KOG0501|consen 530 LGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQ----D 605 (971)
T ss_pred hhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEee----c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999976 5
Q ss_pred ceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhcCCC
Q 012010 331 IKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPG 409 (473)
Q Consensus 331 ~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~~s~~ 409 (473)
+|+++.+++||.||+..--.+ ....+.++++|+|.|.+..|.++.+.++++-|-. |++.+-+.....|.-.
T Consensus 606 DEVVAILGKGDVFGD~FWK~~-------t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtA-FanSFaRNl~LTyNLr 676 (971)
T KOG0501|consen 606 DEVVAILGKGDVFGDEFWKEN-------TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTA-FANSFARNLTLTYNLR 676 (971)
T ss_pred CcEEEEeecCccchhHHhhhh-------hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHH-HHHHhhhceeeEeecc
Confidence 678999999999999633211 2234678999999999999999999999999988 8887777776666433
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-44 Score=352.50 Aligned_cols=285 Identities=19% Similarity=0.357 Sum_probs=257.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhHHHHhccCCCcceeeeecCCCcccCccccccchhhhhhhhcccccc
Q 012010 37 VWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARS 116 (473)
Q Consensus 37 ~~~~~~~~l~~~~~~~H~~aC~w~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~W~~~~~~~~ 116 (473)
-.+..++.+-.++++.|+-||++|+.+..+.- +...|+-+
T Consensus 359 y~~RV~rT~~YmlyilHinacvYY~~Sayqgl-----------------------------------G~~rWVyd----- 398 (815)
T KOG0499|consen 359 YIYRVIRTTGYLLYILHINACVYYWASAYQGL-----------------------------------GTTRWVYD----- 398 (815)
T ss_pred hhhhhHHHHHHHHHHHhhhHHHHHHHHhhccc-----------------------------------ccceeEEc-----
Confidence 34678888888999999999999988533221 34445543
Q ss_pred ccccCCCCcccccchhhhhhccCcchHHHHHHHHHHHhhhccccCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012010 117 TCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVF 196 (473)
Q Consensus 117 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~slYwai~t~ttyGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i 196 (473)
+.. ..|++|+|||+.|++|.|..+.+++.+|++|..+.-+.|+++||.+||.|..+
T Consensus 399 -------------------g~G-----n~YiRCyyfa~kt~~tiG~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDv 454 (815)
T KOG0499|consen 399 -------------------GEG-----NEYIRCYYFAVKTLITIGGLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDV 454 (815)
T ss_pred -------------------CCC-----CceeeehhhHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 46999999999999997765555557999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCHHHHHHHHHHHHHHHhhcCCc
Q 012010 197 LHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPL 276 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~ 276 (473)
+...+.+++.|++.|+..-.||++.+||++.|+||+.+|+|.|++++..||.+++..||..||.+++.+++-.++.++.+
T Consensus 455 i~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqL 534 (815)
T KOG0499|consen 455 IGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQL 534 (815)
T ss_pred HhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCc
Q 012010 277 FQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPF 356 (473)
Q Consensus 277 f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~ 356 (473)
|++++.+.+.+++.+++...|-|||+|.++||++.+||+|..|.|+|.. ..+|+.++..+.+|++|||++|+.
T Consensus 535 Fq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlG-Gp~~~~Vl~tL~~GsVFGEISLLa------ 607 (815)
T KOG0499|consen 535 FQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLG-GPDGTKVLVTLKAGSVFGEISLLA------ 607 (815)
T ss_pred hhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEec-CCCCCEEEEEecccceeeeeeeee------
Confidence 9999999999999999999999999999999999999999999999975 456777889999999999998752
Q ss_pred ccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 357 IERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 357 ~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
..++.+|+++|+|.++|.+++|+++|+.+++..||+
T Consensus 608 igG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~ 643 (815)
T KOG0499|consen 608 IGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPD 643 (815)
T ss_pred ecCCCccchhhhhcccceeeEecHhHHHHHHHhCcc
Confidence 347788999999999999999999999999999998
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.63 E-value=5.8e-15 Score=139.95 Aligned_cols=128 Identities=21% Similarity=0.226 Sum_probs=111.6
Q ss_pred HHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchh
Q 012010 268 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 347 (473)
Q Consensus 268 ~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~ 347 (473)
.+.++.+|+|+.++++.++.+....+.+.|++|++|+++|+.++.+|+|.+|.|+++....+++..+..+.+|++||+.+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~ 85 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAA 85 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHH
Confidence 36788999999999999999999999999999999999999999999999999999976544444479999999999976
Q ss_pred hhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 012010 348 LSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARY 405 (473)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~ 405 (473)
++ ++.++.++++|.++|+++.+++++|.+++.++|. +....++.....
T Consensus 86 ~~---------~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~-l~~~~~~~l~~~ 133 (236)
T PRK09392 86 VV---------LDAPYLMSARTLTRSRVLMIPAELVREAMSEDPG-FMRAVVFELAGC 133 (236)
T ss_pred Hh---------CCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHH-HHHHHHHHHHHH
Confidence 54 4556788999999999999999999999999999 776655554443
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.58 E-value=5.3e-14 Score=130.92 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=102.7
Q ss_pred cCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhccCCc
Q 012010 278 QHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPF 356 (473)
Q Consensus 278 ~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~~~ 356 (473)
+.+|++.++.++..++.+.|++|++|+.+|+.++.+|||.+|.++++..+.+|++. +..+.+|++||+..++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~------- 78 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLF------- 78 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhc-------
Confidence 56899999999999999999999999999999999999999999999887888877 6899999999997554
Q ss_pred ccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012010 357 IERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSAR 404 (473)
Q Consensus 357 ~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~ 404 (473)
.+.+++..+++|.++|+++.+++++|.++++++|+ +....++....
T Consensus 79 -~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~~~~ 124 (211)
T PRK11753 79 -EEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD-ILMALSAQMAR 124 (211)
T ss_pred -cCCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHH-HHHHHHHHHHH
Confidence 23345678999999999999999999999999999 66544444433
No 8
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.54 E-value=1.2e-13 Score=114.29 Aligned_cols=108 Identities=29% Similarity=0.491 Sum_probs=98.5
Q ss_pred cCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhccC
Q 012010 276 LFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRR 354 (473)
Q Consensus 276 ~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~ 354 (473)
+|..++++.+..+...++.+.+.+|++|+.+|+..+.+|+|.+|.++++...++|++. +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~----- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALL----- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHh-----
Confidence 4788999999999999999999999999999999999999999999999888887766 6899999999997554
Q ss_pred CcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 355 PFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 355 ~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
...++..+++|.++|+++.|++++|.++++++|+
T Consensus 76 ----~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~ 109 (115)
T cd00038 76 ----GNGPRSATVRALTDSELLVLPRSDFRRLLQEYPE 109 (115)
T ss_pred ----cCCCCCceEEEcCceEEEEEeHHHHHHHHHHCcH
Confidence 3456678999999999999999999999999998
No 9
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.49 E-value=1.9e-13 Score=108.77 Aligned_cols=90 Identities=29% Similarity=0.460 Sum_probs=81.3
Q ss_pred EEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeee
Q 012010 294 SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLET 372 (473)
Q Consensus 294 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~ 372 (473)
++.|+||++|+++|+.++++|||.+|.++++..+.+|+.. +..+.+|++||+..++ .+.++..+++|.++
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~---------~~~~~~~~~~a~~~ 71 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELL---------TGKPSPFTVIALTD 71 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHH---------HTSBBSSEEEESSS
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeec---------CCCccEEEEEEccC
Confidence 3689999999999999999999999999999988888765 7999999999998665 23467889999999
Q ss_pred eeeeeeCHHHHHHHHHHhHH
Q 012010 373 TEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 373 ~~ll~l~~~~f~~ll~~~P~ 392 (473)
|+++.|++++|.++++++|+
T Consensus 72 ~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 72 SEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp EEEEEEEHHHHHHHHHHSHH
T ss_pred EEEEEEeHHHHHHHHHhCcC
Confidence 99999999999999999995
No 10
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.48 E-value=2.3e-13 Score=128.15 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=95.4
Q ss_pred HHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhccCCcccCCCC
Q 012010 284 VLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFIERLPP 362 (473)
Q Consensus 284 ~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~~~~~~~~~ 362 (473)
|..+|....+.+.|++|++|+.+||.++.+|||.+|.|+++..+.+|++. +..+.+|++||+..++ ++.+
T Consensus 23 ~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~---------~~~~ 93 (226)
T PRK10402 23 FSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELI---------DKDH 93 (226)
T ss_pred CCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhh---------cCCC
Confidence 34467888999999999999999999999999999999999988899887 6899999999997554 4566
Q ss_pred ceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 012010 363 SSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSA 403 (473)
Q Consensus 363 ~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~ 403 (473)
+..+++|.++|+++.+++++|.+++.++|. +....++...
T Consensus 94 ~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~-~~~~~~~~l~ 133 (226)
T PRK10402 94 ETKAVQAIEECWCLALPMKDCRPLLLNDAL-FLRKLCKFLS 133 (226)
T ss_pred CCccEEEeccEEEEEEEHHHHHHHHhcCHH-HHHHHHHHHH
Confidence 788999999999999999999999999998 6654444433
No 11
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.47 E-value=5.6e-13 Score=126.25 Aligned_cols=122 Identities=14% Similarity=0.202 Sum_probs=101.4
Q ss_pred hhcCCcCcCCCHHHHHHHHhhce-EEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhh
Q 012010 271 VRQVPLFQHMDDLVLENICDRVK-SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELL 348 (473)
Q Consensus 271 l~~~~~f~~~s~~~l~~L~~~l~-~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l 348 (473)
+++.+.+..+++++++.|....+ .+.|++|+.|+++||.++.+|+|.+|.|+++..+++|++. +..+.+|++||+..+
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 44555555799999999998886 4689999999999999999999999999999988889886 578899999998543
Q ss_pred hhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 012010 349 SWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSA 403 (473)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~ 403 (473)
. .+ ++..+++|.++|+++.|++++|.+++.++|+ +....++...
T Consensus 95 ~---------~~-~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~-~~~~~~~~~~ 138 (235)
T PRK11161 95 G---------SG-QHPSFAQALETSMVCEIPFETLDDLSGKMPK-LRQQIMRLMS 138 (235)
T ss_pred c---------CC-CCcceEEEeccEEEEEEEHHHHHHHHHHChH-HHHHHHHHHH
Confidence 2 22 2345799999999999999999999999999 6654444443
No 12
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.45 E-value=3.4e-12 Score=106.08 Aligned_cols=110 Identities=24% Similarity=0.427 Sum_probs=98.0
Q ss_pred cCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhccC
Q 012010 276 LFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRR 354 (473)
Q Consensus 276 ~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~ 354 (473)
+|.+++++.++.++..++.+.+++|++|+++|+..+.+|||.+|.++++..+.+|++. +..+.+|++||+..++.
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~---- 76 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLT---- 76 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhcc----
Confidence 4788999999999999999999999999999999999999999999999877777776 68999999999975541
Q ss_pred CcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 355 PFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 355 ~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
....+...+++|.++|++..++.+++.+.+..+|.
T Consensus 77 ---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 111 (120)
T smart00100 77 ---NSRRAASATAVALELATLLRIDFRDFLQLLQENPQ 111 (120)
T ss_pred ---CCCcccceEEEEEeeEEEEccCHHHHHHHHHHhHH
Confidence 12345678999999999999999999999999998
No 13
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.44 E-value=3.3e-12 Score=118.40 Aligned_cols=124 Identities=20% Similarity=0.307 Sum_probs=105.3
Q ss_pred cCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhh
Q 012010 273 QVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWC 351 (473)
Q Consensus 273 ~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~ 351 (473)
..+.|...+.+....+....+.+.+++|++|+.+||..+.+|+|.+|.++++....+|++. +..+++|++||+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~-- 81 (214)
T COG0664 4 ENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALL-- 81 (214)
T ss_pred cccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHh--
Confidence 4566666777888888889999999999999999999999999999999999998888877 6889999999998775
Q ss_pred ccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 012010 352 LRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYY 406 (473)
Q Consensus 352 ~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~~ 406 (473)
.+.++.++++|+++|+++.+++++|.+++.+.|. +....++...+..
T Consensus 82 -------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~-l~~~l~~~~~~~l 128 (214)
T COG0664 82 -------GGDPRSASAVALTDVEVLEIPRKDFLELLAESPK-LALALLRLLARRL 128 (214)
T ss_pred -------cCCCccceEEEcceEEEEEecHHHHHHHHhhCcH-HHHHHHHHHHHHH
Confidence 3346889999999999999999999998877787 6655555544443
No 14
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.34 E-value=1.3e-12 Score=129.53 Aligned_cols=124 Identities=19% Similarity=0.370 Sum_probs=109.3
Q ss_pred HHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecC-CceE-EEEcCCCCe
Q 012010 265 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHN-NIKS-CCMLGPGNF 342 (473)
Q Consensus 265 ~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~-g~~~-i~~l~~G~~ 342 (473)
+.+..+|+++|+|++++++.+.+++..++...|..|++|+++|+.++.+|+|.+|.|.+....+. +.+. +..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 34778999999999999999999999999999999999999999999999999999999876554 2223 799999999
Q ss_pred ecchhhhhhccCCcccCCCCceeEEEEeee-eeeeeeCHHHHHHHHHHhHHHHHHHH
Q 012010 343 SGDELLSWCLRRPFIERLPPSSSTLITLET-TEAFGLEAEDVKYVTQHFRYTFVKEK 398 (473)
Q Consensus 343 fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~-~~ll~l~~~~f~~ll~~~P~~l~~~~ 398 (473)
|||-+|+ +...|++++.|..+ ++++.|+++.|.+++....+ +..+.
T Consensus 348 FGE~al~---------~edvRtAniia~~~gv~cl~lDresF~~liG~l~~-l~ek~ 394 (732)
T KOG0614|consen 348 FGERALL---------GEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEE-LKEKD 394 (732)
T ss_pred hhHHHhh---------ccCccchhhhccCCCceEEEecHHHHHHhcccHHH-hhhhh
Confidence 9998886 56678999999998 99999999999999988776 55433
No 15
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.33 E-value=1.1e-11 Score=124.68 Aligned_cols=122 Identities=17% Similarity=0.221 Sum_probs=105.0
Q ss_pred HHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchh
Q 012010 268 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 347 (473)
Q Consensus 268 ~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~ 347 (473)
.+++.++|.|..++++.+.+|...++...|.+||+|+..|.+.+++|+|.+|.|+++. +|.+++..+..||.||-.+
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~---~~g~v~~~~~~gdlFg~~~ 82 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS---DGGEVLDRLAAGDLFGFSS 82 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc---CCCeeeeeeccCccccchh
Confidence 4788899999999999999999999999999999999999999999999999999875 3455789999999999977
Q ss_pred hhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 012010 348 LSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRS 402 (473)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~ 402 (473)
++. ..++ ...+.|.+++-++.|+++.|.++++++|+ ++.......
T Consensus 83 l~~--------~~~~-~~~~~aeedsl~y~lp~s~F~ql~~~n~~-f~~ff~~~~ 127 (610)
T COG2905 83 LFT--------ELNK-QRYMAAEEDSLCYLLPKSVFMQLMEENPE-FADFFLRSL 127 (610)
T ss_pred hcc--------cCCC-cceeEeeccceEEecCHHHHHHHHHhCcH-HHHHHHHHH
Confidence 651 2223 34678888999999999999999999999 776444333
No 16
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.31 E-value=1.7e-11 Score=115.71 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=89.9
Q ss_pred HHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhccCCcccCCCCcee
Q 012010 287 NICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFIERLPPSSS 365 (473)
Q Consensus 287 ~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~ 365 (473)
.+....+.+.|++|++|+.+||.++++|||.+|.|+++..+++|++. +..+.+|++||+. ...++..
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~------------~~~~~~~ 100 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE------------SGSTHRF 100 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc------------CCCcCCe
Confidence 34556789999999999999999999999999999999988889886 5788999999973 1234578
Q ss_pred EEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012010 366 TLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSAR 404 (473)
Q Consensus 366 ~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~ 404 (473)
+++|+++|+++.+++++|.+++.++|+ +....++....
T Consensus 101 ~~~A~~ds~v~~i~~~~f~~l~~~~p~-l~~~l~~~l~~ 138 (230)
T PRK09391 101 TAEAIVDTTVRLIKRRSLEQAAATDVD-VARALLSLTAG 138 (230)
T ss_pred EEEEcCceEEEEEEHHHHHHHHhhChH-HHHHHHHHHHH
Confidence 999999999999999999999999999 77655555444
No 17
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.29 E-value=5.5e-12 Score=119.91 Aligned_cols=112 Identities=21% Similarity=0.313 Sum_probs=101.6
Q ss_pred HHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecch
Q 012010 267 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDE 346 (473)
Q Consensus 267 ~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~ 346 (473)
..+.+++.-+|++++++...++...|.++.++.|+.|++||+.++.+|+|.+|.+.++. +++.+..+++|..|||.
T Consensus 120 L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv----~~~~v~~~~~g~sFGEl 195 (368)
T KOG1113|consen 120 LEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYV----NGTYVTTYSPGGSFGEL 195 (368)
T ss_pred HHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEE----CCeEEeeeCCCCchhhh
Confidence 34778888899999999999999999999999999999999999999999999999987 45668999999999999
Q ss_pred hhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhH
Q 012010 347 LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFR 391 (473)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P 391 (473)
+|+ -++||.+|+.|.+++.++.|++..|.+++-..-
T Consensus 196 ALm---------yn~PRaATv~a~t~~klWgldr~SFrrIi~~s~ 231 (368)
T KOG1113|consen 196 ALM---------YNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSC 231 (368)
T ss_pred Hhh---------hCCCcccceeeccccceEEEeeceeEEEeeccc
Confidence 887 357899999999999999999999988765543
No 18
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.29 E-value=3.2e-11 Score=123.60 Aligned_cols=113 Identities=19% Similarity=0.339 Sum_probs=101.3
Q ss_pred HHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhh
Q 012010 269 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELL 348 (473)
Q Consensus 269 ~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l 348 (473)
+.++++++|++++++.++.+...++.+.|++||+|+++||..+.+|+|.+|.|+++....+|+..+..+++|++||+. +
T Consensus 8 ~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~-l 86 (413)
T PLN02868 8 EFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG-L 86 (413)
T ss_pred HHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-h
Confidence 567899999999999999999999999999999999999999999999999999998877775557889999999974 2
Q ss_pred hhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 349 SWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
.+.++..+++|.++|+++.|+++.|..+...++.
T Consensus 87 ----------~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~ 120 (413)
T PLN02868 87 ----------SGSVHSADVVAVSELTCLVLPHEHCHLLSPKSIW 120 (413)
T ss_pred ----------CCCCcccEEEECCCEEEEEEcHHHHhhhcccccc
Confidence 2456788999999999999999999988776653
No 19
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.28 E-value=2.5e-11 Score=111.13 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=81.5
Q ss_pred CCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhccCCcccCCC-CceeEEEEeeeeeeee
Q 012010 300 GEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFIERLP-PSSSTLITLETTEAFG 377 (473)
Q Consensus 300 ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~~~~~~~~-~~~~~v~A~~~~~ll~ 377 (473)
|+.|+.+||..+.+|+|.+|.|+++...++|++. +..+++|++||+..++ .+.+ ++..+++|.++|+++.
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~--------~~~~~~~~~~~~A~~~~~v~~ 72 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLI--------TGHRSDRFYHAVAFTRVELLA 72 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeec--------cCCCCccceEEEEecceEEEE
Confidence 7899999999999999999999999988899888 6999999999996554 1222 3457899999999999
Q ss_pred eCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012010 378 LEAEDVKYVTQHFRYTFVKEKVKRSAR 404 (473)
Q Consensus 378 l~~~~f~~ll~~~P~~l~~~~~~~~~~ 404 (473)
+++++|.+++.++|+ +....++....
T Consensus 73 i~~~~~~~l~~~~p~-l~~~~~~~l~~ 98 (193)
T TIGR03697 73 VPIEQVEKAIEEDPD-LSMLLLQGLSS 98 (193)
T ss_pred eeHHHHHHHHHHChH-HHHHHHHHHHH
Confidence 999999999999999 77655555443
No 20
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.22 E-value=1e-10 Score=107.98 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=73.0
Q ss_pred hceEEEecCCCEEEcCCC--ccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhccCCcccCCCCceeEE
Q 012010 291 RVKSLIFTKGEVITKEGD--PVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTL 367 (473)
Q Consensus 291 ~l~~~~~~~ge~I~~~Gd--~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v 367 (473)
.++...|++|++|+.+|| .++.+|+|.+|.|+++..+.+|++. +..+.+|++||+..++ + .++..++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~---------~-~~~~~~~ 74 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA---------G-AERAYFA 74 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc---------C-CCCCceE
Confidence 467889999999999999 7799999999999999998999988 5888999999996442 2 3467789
Q ss_pred EEeeeeeeeeeCHHHH
Q 012010 368 ITLETTEAFGLEAEDV 383 (473)
Q Consensus 368 ~A~~~~~ll~l~~~~f 383 (473)
+|.++|+++.|++++|
T Consensus 75 ~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 75 EAVTDSRIDVLNPALM 90 (202)
T ss_pred EEcCceEEEEEEHHHc
Confidence 9999999999999887
No 21
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.19 E-value=3e-11 Score=119.96 Aligned_cols=118 Identities=16% Similarity=0.283 Sum_probs=105.5
Q ss_pred HHHHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCC
Q 012010 262 IKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGN 341 (473)
Q Consensus 262 i~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~ 341 (473)
-..++..+.+.+-.|++++..+.+.+++..|-+..|.+|+.|+++||+++.+|.+.+|+++|.. +...+..+++|.
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~----~g~ll~~m~~gt 222 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR----EGKLLGKMGAGT 222 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee----CCeeeeccCCch
Confidence 3455667888888999999999999999999999999999999999999999999999999976 555689999999
Q ss_pred eecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 342 FSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 342 ~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
.|||.++++. .+|+++|+|+++|+++.|+++-|+.++..--.
T Consensus 223 vFGELAILyn---------ctRtAsV~alt~~~lWaidR~vFq~IM~~tg~ 264 (732)
T KOG0614|consen 223 VFGELAILYN---------CTRTASVRALTDVRLWAIDREVFQAIMMRTGL 264 (732)
T ss_pred hhhHHHHHhC---------CcchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999988854 45899999999999999999999999876544
No 22
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=1.3e-09 Score=103.87 Aligned_cols=118 Identities=14% Similarity=0.278 Sum_probs=105.2
Q ss_pred HHHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCe
Q 012010 263 KYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNF 342 (473)
Q Consensus 263 ~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~ 342 (473)
..-+|.+.|+++|++..+.......++..+.+..|.+|+.|+.+|+.++.+|+|.+|.|.+.... +| +...++.|++
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~--v~vkl~~~dy 310 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DG--VEVKLKKGDY 310 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CC--eEEEechhhh
Confidence 34568899999999999999999999999999999999999999999999999999999987643 33 3339999999
Q ss_pred ecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 343 SGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 343 fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
|||.+++ .+.+|.+++.|.+...+..+++..|+.++.-.-+
T Consensus 311 fge~al~---------~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~d 351 (368)
T KOG1113|consen 311 FGELALL---------KNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQD 351 (368)
T ss_pred cchHHHH---------hhchhhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence 9999887 4566899999999999999999999999988765
No 23
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.81 E-value=2e-08 Score=77.86 Aligned_cols=53 Identities=19% Similarity=0.516 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012010 145 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLH 198 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~ 198 (473)
.|..|+||+++|+|| |||+.|.++ ..++++++.+++|..++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~-~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTP-AGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 489999999999999 999999986 89999999999999999999999998874
No 24
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.48 E-value=3.3e-07 Score=91.71 Aligned_cols=54 Identities=20% Similarity=0.392 Sum_probs=45.6
Q ss_pred HHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 012010 148 FPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 202 (473)
Q Consensus 148 ~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~ 202 (473)
.+++||+.|||| |||++|.|. .-++++....+.|+++.|.=|..|-+=+....+
T Consensus 380 a~~WWaiVTMTTVGYGDm~P~T~-~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~ 435 (477)
T KOG3713|consen 380 AGFWWAVVTMTTVGYGDMVPVTV-LGKLVASLCILCGVLVLALPITIIVNNFSMYYS 435 (477)
T ss_pred chhheeeEEEeeecccCcccccc-chHHHHHHHHHHhHHHhhcchHhHhhhHHHHHH
Confidence 588999999999 999999996 999999999999999999877666555544443
No 25
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.39 E-value=1.2e-06 Score=79.76 Aligned_cols=54 Identities=22% Similarity=0.596 Sum_probs=43.0
Q ss_pred CcchHHHHHHHHHHHhhhccc--cCCcccc-----cchhhHHHH-HHHHHHHHHHHHHHHHHH
Q 012010 139 NVSRLEKILFPIFWGLMTLST--FGNLEST-----TEWLEVVFN-IIVLTSGLLLVTMLIGNI 193 (473)
Q Consensus 139 ~~~~~~~Yl~slYwai~t~tt--yGdi~p~-----t~~~E~~~~-i~~ml~g~~~~a~iig~i 193 (473)
..+..+.|..|+||++.++|+ +||+.+. + ..+.++. ++..+.+.++++.++|.|
T Consensus 139 ~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 139 GYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARS-WLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp THHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTS-TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccCCccccccccccccc-hhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 445567899999999999998 8888886 4 4888888 666666668888888865
No 26
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.19 E-value=2.6e-06 Score=90.18 Aligned_cols=112 Identities=16% Similarity=0.265 Sum_probs=92.5
Q ss_pred HHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCce-EEEEcCCCCeecchhhhhhccCCcccCCC
Q 012010 283 LVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK-SCCMLGPGNFSGDELLSWCLRRPFIERLP 361 (473)
Q Consensus 283 ~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~-~i~~l~~G~~fGe~~l~~~~~~~~~~~~~ 361 (473)
.++..+-..+.-....||+.++++||..+++|+|.+|.++.......|+. ++..++.||.+|+..++ ...
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~l---------t~~ 569 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEML---------TKQ 569 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHh---------hcC
Confidence 46677777888999999999999999999999999999998765444544 47999999999998665 356
Q ss_pred CceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012010 362 PSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSAR 404 (473)
Q Consensus 362 ~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~ 404 (473)
+|..++.|+.++++.+||..-|..+..+||. +-.+..+..++
T Consensus 570 ~R~tTv~AvRdSelariPe~l~~~ik~ryP~-v~~rl~~ll~~ 611 (1158)
T KOG2968|consen 570 PRATTVMAVRDSELARIPEGLLNFIKLRYPQ-VVTRLIKLLAE 611 (1158)
T ss_pred CccceEEEEeehhhhhccHHHHHHHHHhccH-HHHHHHHHHHH
Confidence 6788999999999999999999999999998 44434443333
No 27
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=97.72 E-value=2.9e-06 Score=81.22 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012010 146 ILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGN 192 (473)
Q Consensus 146 Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~ 192 (473)
-=.|++||++|||| |||..|.| .+-+++..++.+.|++-.|.-+-.
T Consensus 394 IPdaFWwavVTMTTVGYGDm~P~T-vgGKIVGslCAiaGVLTiALPVPV 441 (507)
T KOG1545|consen 394 IPDAFWWAVVTMTTVGYGDMVPVT-VGGKIVGSLCAIAGVLTIALPVPV 441 (507)
T ss_pred CcccceEEEEEEEeeccccceecc-cCceehhhHHhhhhheEecccccE
Confidence 34589999999999 99999998 499999999988888877764433
No 28
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.70 E-value=0.0002 Score=72.53 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012010 145 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFL 197 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~ 197 (473)
.+..|+||++.|+|| |||+.|.+. ..++++++++++|..+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~-~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSE-SARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999 999999986 8999999999999999999999877543
No 29
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.61 E-value=0.00027 Score=75.34 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=85.1
Q ss_pred HHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecch-hhhhhccCCcccCCCCcee
Q 012010 288 ICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDE-LLSWCLRRPFIERLPPSSS 365 (473)
Q Consensus 288 L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~-~l~~~~~~~~~~~~~~~~~ 365 (473)
++.+++...+..|++|++.|+..+.+|.+.+|...++..+.+|++. +....+|+.|... +++..+. .+ ....++.
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~-~~--ps~~~~i 187 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLP-GF--PSLSRTI 187 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhcc-CC--Cccccee
Confidence 3477888999999999999999999999999999999888889988 6999999887665 3332221 11 1134677
Q ss_pred EEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 366 TLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 366 ~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
.++|.++|.+..++.+.|.+...+||+
T Consensus 188 ~akA~t~~tv~~~p~~sF~~~~~k~P~ 214 (1158)
T KOG2968|consen 188 AAKAATDCTVARIPYTSFRESFHKNPE 214 (1158)
T ss_pred eeeeecCceEEEeccchhhhhhccChH
Confidence 899999999999999999999999998
No 30
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.00055 Score=69.49 Aligned_cols=88 Identities=18% Similarity=0.349 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 012010 141 SRLEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWM 218 (473)
Q Consensus 141 ~~~~~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m 218 (473)
+-+.-|-.|++|++.|+|| |||.+|.| +.-++.+.+..++|..+||.--|.+++=+.-.-+ +++ .=++|-
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~T-WlGr~laa~fsligiSFFALPAGILGSGfALKVQ-eq~------RQKHf~ 336 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQT-WLGRLLAACFSLIGISFFALPAGILGSGFALKVQ-EQH------RQKHFN 336 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCccc-chhHHHHHHHHHHHHHHHhcccccccchhhhhhH-HHH------HHHHHH
Confidence 3457899999999999999 99999998 5999999999999999999877777665532221 111 114566
Q ss_pred HhcCCCHHHHHHHHHHHH
Q 012010 219 RKRQLPQGFRQRVRNYER 236 (473)
Q Consensus 219 ~~~~i~~~L~~rv~~y~~ 236 (473)
+.++.-..|.+-.-+||.
T Consensus 337 rrr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 337 RRRNPAASLIQCAWRYYA 354 (654)
T ss_pred hhcchHHHHHHHHHHHHh
Confidence 777777777777666664
No 31
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.40 E-value=0.0048 Score=56.25 Aligned_cols=96 Identities=8% Similarity=0.026 Sum_probs=72.7
Q ss_pred HHHHHHhhceEEEecCCCEE-EcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCC
Q 012010 284 VLENICDRVKSLIFTKGEVI-TKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPP 362 (473)
Q Consensus 284 ~l~~L~~~l~~~~~~~ge~I-~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~ 362 (473)
....|....++..+++|..+ .-.....+..+++.+|.|.+.. .|+ ..+........||-.... ....
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr--~d~-ll~~t~~aP~IlGl~~~~---------~~~~ 81 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR--EEN-VLIGITQAPYIMGLADGL---------MKND 81 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe--cCC-eEEEeccCCeEeeccccc---------CCCC
Confidence 44566667788899999997 4444444779999999999942 344 446788888899985322 1223
Q ss_pred ceeEEEEeeeeeeeeeCHHHHHHHHHHhH
Q 012010 363 SSSTLITLETTEAFGLEAEDVKYVTQHFR 391 (473)
Q Consensus 363 ~~~~v~A~~~~~ll~l~~~~f~~ll~~~P 391 (473)
..+.++|.++|+++.++.++|.++++++.
T Consensus 82 ~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 82 IPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred ceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 35689999999999999999999999874
No 32
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.20 E-value=0.00035 Score=70.94 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Q 012010 144 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAM 207 (473)
Q Consensus 144 ~~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~ 207 (473)
-.|..|.|+-+.||+| |||+...|. ..+.|-++..+.|..+||-.+..|.+++.+-++-.-+|
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~-lgrlfmvffil~glamfasyvpeiielignr~kyggey 351 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTT-LGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEY 351 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhh-hhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCcee
Confidence 4699999999999999 999999986 99999999999999999999999999998766543333
No 33
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=97.19 E-value=6.3e-05 Score=72.81 Aligned_cols=55 Identities=22% Similarity=0.503 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHhh
Q 012010 144 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTM----LIGNIKVFLHA 199 (473)
Q Consensus 144 ~~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~----iig~i~~i~~~ 199 (473)
..--.+|++.++|||| |||.+|.| +.-++|..+..+.|+++.|. |+++++.|..+
T Consensus 355 TsIPaaFWYTIVTmTTLGYGDMVp~T-IaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 355 TSIPAAFWYTIVTMTTLGYGDMVPST-IAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred ccCcHhHhhheeeeeeccccccchHH-HHHHHhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 3344688889999999 99999998 69999999999999988876 56777777644
No 34
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.0096 Score=59.58 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHh
Q 012010 143 LEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRK 220 (473)
Q Consensus 143 ~~~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 220 (473)
..-|+.|++....|..+ |||++|.|+ --+..+++.-++|+++.|.+++.++.=+ ++..--+.+++||-.
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~Ty-cGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTY-CGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMD 355 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCcc-ccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 35689999887666656 999999997 9999999999999999999998887544 444555678899988
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q 012010 221 RQLPQGFRQRVRNYERQRWA 240 (473)
Q Consensus 221 ~~i~~~L~~rv~~y~~~~~~ 240 (473)
.++.+++++-..+=++..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888877666665554
No 35
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.89 E-value=0.029 Score=48.05 Aligned_cols=105 Identities=17% Similarity=0.236 Sum_probs=80.1
Q ss_pred CCHHHHHHHHhh-ceEEEecCCCEEEcCCC-ccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcc
Q 012010 280 MDDLVLENICDR-VKSLIFTKGEVITKEGD-PVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFI 357 (473)
Q Consensus 280 ~s~~~l~~L~~~-l~~~~~~~ge~I~~~Gd-~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~ 357 (473)
.|.....+|+.. .+.....+|+.-.-||. ..+.+-++++|.+++.. +| +.+..+.|.+|........ .. +
T Consensus 15 Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~---~g-~fLH~I~p~qFlDSPEW~s-~~-~-- 86 (153)
T PF04831_consen 15 VSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC---DG-RFLHYIYPYQFLDSPEWES-LR-P-- 86 (153)
T ss_pred CCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE---CC-EeeEeecccccccChhhhc-cc-c--
Confidence 577777788777 67788999999999994 45899999999999975 33 4456667777665543211 00 0
Q ss_pred cCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 358 ERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 358 ~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
+.+..-..++.|.++|..+.-+|+.+..++.+.|-
T Consensus 87 s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~ 121 (153)
T PF04831_consen 87 SEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPF 121 (153)
T ss_pred CCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHH
Confidence 13445678999999999999999999999999986
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.0021 Score=66.05 Aligned_cols=55 Identities=20% Similarity=0.489 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012010 145 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHAT 200 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~ 200 (473)
-+..|+||+++++|| ||+++|.|. ..++++|+..++|.-++..+++.++..+...
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~-~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~ 171 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTD-AGRLFTILYALVGIPLMLLILADIGKFLADS 171 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcC-cchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 588999999999999 999999997 8899999999999999999999999888543
No 37
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=96.66 E-value=0.0057 Score=60.57 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhccc--cCC--cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012010 144 EKILFPIFWGLMTLST--FGN--LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHA 199 (473)
Q Consensus 144 ~~Yl~slYwai~t~tt--yGd--i~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~ 199 (473)
..+..+|+|++.|+|| ||. ++|... .-.++.++=+++|.++.|+++|.+-.=++.
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~-~a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECP-YAIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3589999999999999 998 556543 555667788899999999999887665544
No 38
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.56 E-value=0.0051 Score=63.85 Aligned_cols=114 Identities=14% Similarity=0.235 Sum_probs=87.4
Q ss_pred HHHHHhhcCCcCcCCCHHHHHHHHhhceEEE-ecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 266 LCLDLVRQVPLFQHMDDLVLENICDRVKSLI-FTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 266 ~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~-~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
...+++.+.|-|.+++-...++|+..|.... -.+|.+|...|+.-++.+.|++|.|++.. .+|+. ..+.-|+.||
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~--PdGk~--e~l~mGnSFG 353 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK--PDGKR--EELKMGNSFG 353 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec--CCCce--EEeecccccC
Confidence 3458888999999999999999999887554 46899999999999999999999999976 66765 5677899999
Q ss_pred chhhhhhccCCcccCCCCceeEE-EEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 345 DELLSWCLRRPFIERLPPSSSTL-ITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 345 e~~l~~~~~~~~~~~~~~~~~~v-~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
..-- ... .....-+ .-+.+|+..+|...|+-.++..-.+
T Consensus 354 ~~PT--------~dk-qym~G~mRTkVDDCqFVciaqqDycrIln~vek 393 (1283)
T KOG3542|consen 354 AEPT--------PDK-QYMIGEMRTKVDDCQFVCIAQQDYCRILNTVEK 393 (1283)
T ss_pred CCCC--------cch-hhhhhhhheecccceEEEeehhhHHHHHHHHHh
Confidence 7411 000 0111112 3367899999999999999887543
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.73 E-value=0.19 Score=48.42 Aligned_cols=60 Identities=18% Similarity=0.361 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhccc--cCCcccccc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 012010 145 KILFPIFWGLMTLST--FGNLESTTE-------WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKK 204 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~t~-------~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~ 204 (473)
.|..|+||.+.|+|| +||.++.-+ ..=+.++.+.+++|..+++-.++-+.-.+..++...
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~~ 254 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAED 254 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 399999999999999 999776322 122467778888999999998888887776665533
No 40
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=94.41 E-value=0.13 Score=50.70 Aligned_cols=54 Identities=11% Similarity=0.222 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhhccc--cCCccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012010 145 KILFPIFWGLMTLST--FGNLES--TTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHA 199 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p--~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~ 199 (473)
-...||-|++-|=|| ||--.+ .-. .-.+..++=+++|+++-|+++|.+-.=++.
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP-~aI~ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECP-EAIFLLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467788899999888 997333 321 334445566788999999999987655543
No 41
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=93.50 E-value=0.098 Score=54.72 Aligned_cols=90 Identities=12% Similarity=0.207 Sum_probs=73.9
Q ss_pred HHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhh
Q 012010 269 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELL 348 (473)
Q Consensus 269 ~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l 348 (473)
..|.+...|.++-..-+..++.....+.++...++++.|++.++.|++++|.|-+. | ..+.|-.+||..
T Consensus 37 ~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~-----g----qi~mp~~~fgkr-- 105 (1283)
T KOG3542|consen 37 EQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE-----G----QIYMPYGCFGKR-- 105 (1283)
T ss_pred HHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee-----c----ceecCccccccc--
Confidence 45667788888888899999999999999999999999999999999999999762 3 345677778873
Q ss_pred hhhccCCcccCCCCceeEEEEeeeeeeeeeC
Q 012010 349 SWCLRRPFIERLPPSSSTLITLETTEAFGLE 379 (473)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~ 379 (473)
.+..|+.+.-.+.+++.++++
T Consensus 106 ----------~g~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 106 ----------TGQNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred ----------cccccccceeeecccceeeee
Confidence 234577888888888888884
No 42
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=92.66 E-value=0.039 Score=52.98 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012010 141 SRLEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVF 196 (473)
Q Consensus 141 ~~~~~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i 196 (473)
...-+..-|||||++.+|| ||.-+|.|+ .-++|+|+.-++|+-..-..+..+++=
T Consensus 76 g~qWkF~GaFYFa~TVItTIGyGhstP~T~-~GK~Fcm~Yal~Gipl~lvmFqs~gER 132 (350)
T KOG4404|consen 76 GPQWKFAGAFYFATTVITTIGYGHSTPSTD-GGKAFCMFYALVGIPLTLVMFQSIGER 132 (350)
T ss_pred ccccccCcceEEEEEEEeeeccCCCCCCCc-CceehhhhHHHhcCchHHHHHHHHHHH
Confidence 3344677899999999999 999999997 999999999999988777766666643
No 43
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=85.50 E-value=0.32 Score=49.80 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhccc--cCCcccccchhhH--------HHHHHHHHHHHHHHHHHH
Q 012010 144 EKILFPIFWGLMTLST--FGNLESTTEWLEV--------VFNIIVLTSGLLLVTMLI 190 (473)
Q Consensus 144 ~~Yl~slYwai~t~tt--yGdi~p~t~~~E~--------~~~i~~ml~g~~~~a~ii 190 (473)
--|+.|+||+++++|| +||++|.+. ... ....+..++|...++.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTL-LGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCC-cceeeccccccchhHHHHHhhhhHHHHHh
Confidence 4689999999999999 999999885 433 577778888888887776
No 44
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.92 E-value=6.4 Score=40.42 Aligned_cols=206 Identities=14% Similarity=0.186 Sum_probs=112.9
Q ss_pred hhHHHHHHhhhhcccccccceeehhhhHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhHHHHhccCCCcceeeeecCCC
Q 012010 12 YLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEP 91 (473)
Q Consensus 12 ~l~rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~H~~aC~w~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (473)
++.|+.|++|+.|..+-.......+.+-++.++...+ |.+.-++++-|
T Consensus 98 ~~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv----~~~~ilfHWNa---------------------------- 145 (536)
T KOG0500|consen 98 SLERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLV----HYCLILFHWNA---------------------------- 145 (536)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHH----HHHHHHHHHhh----------------------------
Confidence 5679999999988877666666666777666655443 44444444332
Q ss_pred cccCccccccchhhhhhhhccccccccccC--CCCcccccchhhhhhccCcchHHHHHHHHHHHhhhccccCCcccccch
Q 012010 92 IYYGTTDMVRDRARLAWAENKQARSTCIES--SNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEW 169 (473)
Q Consensus 92 ~~y~~~~~~~~~~~~~W~~~~~~~~~c~~~--~~~~~~~~~~~~~~~~~~~~~~~~Yl~slYwai~t~ttyGdi~p~t~~ 169 (473)
|++. +...+++..+|+++.+.++. +++..+.|-.
T Consensus 146 --------------------------ClYf~iS~~~g~~~d~wvY~~i~d~~------------------~~~c~~~n~~ 181 (536)
T KOG0500|consen 146 --------------------------CLYFLISKAIGFTTDDWVYPKINDPE------------------FATCDAGNLT 181 (536)
T ss_pred --------------------------HHHHhhhHhcCccccccccCCccCcc------------------ccccchhHHH
Confidence 4433 44455666556665544332 3332223323
Q ss_pred hhHHHHHHHHHHH-----------------HHHHHHHHHH--HHHHHhhcchHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 012010 170 LEVVFNIIVLTSG-----------------LLLVTMLIGN--IKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQR 230 (473)
Q Consensus 170 ~E~~~~i~~ml~g-----------------~~~~a~iig~--i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~r 230 (473)
.|+++++-+.-+. -.++-+++|. ++.|+.+..+--.+......+.++-| +-
T Consensus 182 ReY~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~m----------DG 251 (536)
T KOG0500|consen 182 REYLYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKM----------DG 251 (536)
T ss_pred HHHHHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHH----------HH
Confidence 5666655443322 1233344444 45555555554444444444444333 45
Q ss_pred HHHHHHHHHHHhcCCCHHHHHhhCCHHHHHHHHHHH-H----HHHhhcCCcCcCCCHHHHHHHHhhceEEEec-------
Q 012010 231 VRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHL-C----LDLVRQVPLFQHMDDLVLENICDRVKSLIFT------- 298 (473)
Q Consensus 231 v~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~-~----~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~------- 298 (473)
|+.|++|+ ..|..|+.++..-- | .+....-...+.+|+....+|+..+.-.+.+
T Consensus 252 iK~YM~~R--------------kV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ 317 (536)
T KOG0500|consen 252 IKQYMRYR--------------KVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQD 317 (536)
T ss_pred HHHHHHHh--------------cccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHh
Confidence 77888775 67778888776532 1 2222222444557777777776654333222
Q ss_pred ------------CCCEEEcCCCccCeEEEEEeeEEE
Q 012010 299 ------------KGEVITKEGDPVQRMLFVVRGHLQ 322 (473)
Q Consensus 299 ------------~ge~I~~~Gd~~~~lyfI~~G~v~ 322 (473)
-.-.++.+|| |+..+|.+.
T Consensus 318 ce~~lL~elVLklk~qvfSPgD-----yICrKGdvg 348 (536)
T KOG0500|consen 318 CEAGLLVELVLKLKPQVFSPGD-----YICRKGDVG 348 (536)
T ss_pred cchhHHHHHHHHhcceeeCCCC-----eEEecCccc
Confidence 2245666665 889999873
No 45
>PLN03223 Polycystin cation channel protein; Provisional
Probab=81.01 E-value=30 Score=40.28 Aligned_cols=48 Identities=10% Similarity=0.040 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 012010 172 VVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMR 219 (473)
Q Consensus 172 ~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~ 219 (473)
..|..+++++..++.-++|+.|..-++.......+-...-.++.+||+
T Consensus 1397 IYFfSFILLV~FILLNMFIAII~DSFsEVK~d~seq~s~e~EIvDfm~ 1444 (1634)
T PLN03223 1397 IYFYSYNIFVFMILFNFLLAIICDAFGEVKANAAETVSVHTELFPMLR 1444 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH
Confidence 345556655565666666666665555443332222233344444443
No 46
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=80.55 E-value=12 Score=33.51 Aligned_cols=57 Identities=23% Similarity=0.448 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--hcCCCHHHHHhhC--CHHHHHHHHHHH
Q 012010 208 QLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAA--MRGVDECEMISNL--PEGLRRDIKYHL 266 (473)
Q Consensus 208 ~~~~~~i~~~m~~~~i~~~L~~rv~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~~i~~~~ 266 (473)
++-+++++.+++ ++|++-++++.+||+-+.+. .++.+|+++.++| |.++-+++..+.
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 455788889997 59999999999999977764 4467899999998 556666666543
No 47
>COG4709 Predicted membrane protein [Function unknown]
Probab=79.58 E-value=13 Score=33.20 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--cCCCHHHHHhhC--CHHHHHHHHHHHHHHHhhcCCcCcCCCH
Q 012010 208 QLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAM--RGVDECEMISNL--PEGLRRDIKYHLCLDLVRQVPLFQHMDD 282 (473)
Q Consensus 208 ~~~~~~i~~~m~~~~i~~~L~~rv~~y~~~~~~~~--~~~~~~~il~~L--p~~Lr~~i~~~~~~~~l~~~~~f~~~s~ 282 (473)
.+-++++++|++ ++|++.++.+..+|+-++... .+.+|+|+..+| |.++-.|+..+.-.+-.+.-|-+.+.+.
T Consensus 4 ~efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ 80 (195)
T COG4709 4 TEFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRR 80 (195)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHH
Confidence 345778888887 799999999999999666543 455799999998 6677777766655555555455555444
No 48
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=75.46 E-value=13 Score=27.01 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=32.5
Q ss_pred EEecCCCEEEcCCCccC-eEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 295 LIFTKGEVITKEGDPVQ-RMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 295 ~~~~~ge~I~~~Gd~~~-~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
..++||+..-..-.... .+++|++|.+.+.. +|+ ...+.+||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE--RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE--EeEccCCEEEE
Confidence 46788887665554445 89999999999863 333 46788888763
No 49
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=67.39 E-value=35 Score=28.62 Aligned_cols=68 Identities=9% Similarity=0.050 Sum_probs=41.2
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEeeEEEEE-EEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEee
Q 012010 293 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSS-QILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLE 371 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~-~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~ 371 (473)
....++||..+-..-....++++|++|.+.+. . .+|+ ...+.+||.+--. .+.+ ..+++.+
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i--~~g~--~~~L~aGD~i~~~------------~~~~--H~~~N~e 99 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDL--ATGE--VHPIRPGTMYALD------------KHDR--HYLRAGE 99 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEc--CCCE--EEEeCCCeEEEEC------------CCCc--EEEEcCC
Confidence 44577888755332222247999999999985 2 1243 3789999987531 1222 2345457
Q ss_pred eeeeeee
Q 012010 372 TTEAFGL 378 (473)
Q Consensus 372 ~~~ll~l 378 (473)
+++++.+
T Consensus 100 ~~~~l~v 106 (125)
T PRK13290 100 DMRLVCV 106 (125)
T ss_pred CEEEEEE
Confidence 7777665
No 50
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=64.84 E-value=12 Score=28.14 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=28.8
Q ss_pred cCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 298 TKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 298 ~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
.||..-..-.. +++.+|++|.|.+.. ++|.. ..+.+||.|--
T Consensus 15 ~pg~~~~~~~~--~E~~~vleG~v~it~--~~G~~--~~~~aGD~~~~ 56 (74)
T PF05899_consen 15 TPGKFPWPYPE--DEFFYVLEGEVTITD--EDGET--VTFKAGDAFFL 56 (74)
T ss_dssp ECEEEEEEESS--EEEEEEEEEEEEEEE--TTTEE--EEEETTEEEEE
T ss_pred CCceeEeeCCC--CEEEEEEEeEEEEEE--CCCCE--EEEcCCcEEEE
Confidence 45544333322 889999999999854 56654 78899998743
No 51
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=62.16 E-value=2.4e+02 Score=32.20 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012010 177 IVLTSGLLLVTMLIGNIKVFL 197 (473)
Q Consensus 177 ~~ml~g~~~~a~iig~i~~i~ 197 (473)
+..++.-++...++|.+..-+
T Consensus 1368 fllIvsffVlnmfVgvvvenf 1388 (1956)
T KOG2302|consen 1368 FLLIVSFFVLNMFVGVVVENF 1388 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555544443
No 52
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=61.61 E-value=15 Score=29.89 Aligned_cols=44 Identities=27% Similarity=0.499 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHHHHH----------hcCCCHHHHHhhCCHHHHHHHHHH
Q 012010 222 QLPQGFRQRVRNYERQRWAA----------MRGVDECEMISNLPEGLRRDIKYH 265 (473)
Q Consensus 222 ~i~~~L~~rv~~y~~~~~~~----------~~~~~~~~il~~Lp~~Lr~~i~~~ 265 (473)
-+|++++..|...+.-.-.. ....+...++..||++||++|..+
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 48999999999988744322 122345689999999999999864
No 53
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=61.18 E-value=45 Score=23.66 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchH---HHHHHHHHHHHHHHHHh
Q 012010 177 IVLTSGLLLVTMLIGNIKVFLHATTSK---KQAMQLKMRNIEWWMRK 220 (473)
Q Consensus 177 ~~ml~g~~~~a~iig~i~~i~~~~~~~---~~~~~~~~~~i~~~m~~ 220 (473)
.+.+++.+.|+.+ +..++.+.+.+ ....++|+|++-+.+.+
T Consensus 14 ~l~vl~~~~Ftl~---IRri~~~s~~kkq~~~~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 14 ILIVLFGASFTLF---IRRILINSNAKKQDVDSMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHHHHH---HHHHHHhccccccchhHHHHHHHHHHHHHcc
Confidence 4444444445543 55555553333 33588899988877643
No 54
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=60.32 E-value=32 Score=29.52 Aligned_cols=55 Identities=18% Similarity=0.188 Sum_probs=38.4
Q ss_pred hceEEEecCCCEEEcCCC-ccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecc
Q 012010 291 RVKSLIFTKGEVITKEGD-PVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGD 345 (473)
Q Consensus 291 ~l~~~~~~~ge~I~~~Gd-~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe 345 (473)
.+....+.||...-..-. ...++++|++|...+....+++++. ...+.+||.+-.
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i 87 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV 87 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE
Confidence 345567788887654432 2578999999999987655444443 578999998744
No 55
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=57.54 E-value=56 Score=29.69 Aligned_cols=53 Identities=9% Similarity=0.009 Sum_probs=36.8
Q ss_pred ceEEEecCCCEE---------EcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVI---------TKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I---------~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+-...+.||.+. +++.....++|+|++|...+...+.+|......+.+|+.+=
T Consensus 70 ~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~ 131 (191)
T PRK04190 70 FGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVY 131 (191)
T ss_pred EEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEE
Confidence 445667888753 33333346999999999998765555554467889999763
No 56
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=55.62 E-value=50 Score=28.99 Aligned_cols=51 Identities=4% Similarity=0.057 Sum_probs=34.2
Q ss_pred ceEEEe-cCCCEE-EcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIF-TKGEVI-TKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~-~~ge~I-~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
++...+ .||+-- ++..+ .++++++++|.+.+-..+ +|+.....+.+||+|=
T Consensus 29 ~~v~~vgGpn~R~d~H~~~-tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fl 81 (159)
T TIGR03037 29 FMVTVVGGPNARTDFHDDP-GEEFFYQLKGEMYLKVTE-EGKREDVPIREGDIFL 81 (159)
T ss_pred EEEEEeCCCCCCcccccCC-CceEEEEEcceEEEEEEc-CCcEEEEEECCCCEEE
Confidence 444445 555443 55534 699999999999886432 3443468899999883
No 57
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=54.69 E-value=38 Score=34.20 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=38.6
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+....+.||...--.-....++.++++|.+++...+.+|+.....+.+||.+=
T Consensus 69 ~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~ 121 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWY 121 (367)
T ss_pred ceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEE
Confidence 34556788876543223446899999999999876666776667899999873
No 58
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=52.78 E-value=52 Score=27.50 Aligned_cols=48 Identities=13% Similarity=0.186 Sum_probs=35.2
Q ss_pred hceEEEecCCCEE-EcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 291 RVKSLIFTKGEVI-TKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 291 ~l~~~~~~~ge~I-~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
.+....++||+-+ .+.-...+++|+|++|...+.. +++ ...+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~---~~~--~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI---GGE--EVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE---CCE--EEEecCCCEE
Confidence 4567778888885 4444557999999999999875 233 3567888876
No 59
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=52.29 E-value=97 Score=28.30 Aligned_cols=59 Identities=27% Similarity=0.434 Sum_probs=38.6
Q ss_pred hhCCHHHHHHHHHHHHHHHhhcCCcC-cCCCHHHHHHHHhhceEEE--ecCCCEEEcCCCccC
Q 012010 252 SNLPEGLRRDIKYHLCLDLVRQVPLF-QHMDDLVLENICDRVKSLI--FTKGEVITKEGDPVQ 311 (473)
Q Consensus 252 ~~Lp~~Lr~~i~~~~~~~~l~~~~~f-~~~s~~~l~~L~~~l~~~~--~~~ge~I~~~Gd~~~ 311 (473)
..+|+. ...+...+...++.---.| ...++....+......+.. +.+||.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 345555 3444444444433222222 4456777888888899888 999999999999764
No 60
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=52.18 E-value=28 Score=29.46 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHHhhhccc-cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 012010 141 SRLEKILFPIFWGLMTLST-FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMR 219 (473)
Q Consensus 141 ~~~~~Yl~slYwai~t~tt-yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~ 219 (473)
........++++.+.+++. -++..|.+. ..+++.+++.+++.++.+..-+++++.+..-. +...++.+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~q~~~~~~~s~-s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-----~~~~i~sl~dL~~ 113 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQQGSSIRPRSW-SGRILLAFWWLFSLILIASYTANLTSFLTVPK-----YEPPIDSLEDLAN 113 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HTSS-SSHHHHHT
T ss_pred cCcccHHHHHHHHHHhhccccccccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cCCCCCCHHHHHH
Confidence 3445677788888888876 567888875 99999999999999999999999999885432 2233455555554
Q ss_pred hc
Q 012010 220 KR 221 (473)
Q Consensus 220 ~~ 221 (473)
..
T Consensus 114 ~~ 115 (148)
T PF00060_consen 114 SG 115 (148)
T ss_dssp HS
T ss_pred CC
Confidence 44
No 61
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=48.07 E-value=60 Score=32.78 Aligned_cols=52 Identities=6% Similarity=0.085 Sum_probs=38.4
Q ss_pred ceEEEecCCCEEEcCC-CccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 292 VKSLIFTKGEVITKEG-DPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 292 l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
+....+.||...-..= ...+++++|++|.+++...+.+|+.....+.+||.+
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEE
Confidence 4566778888664333 335789999999999987666666556789999976
No 62
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=44.10 E-value=52 Score=20.67 Aligned_cols=26 Identities=12% Similarity=0.228 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCC-----HHHHHHHHHHH
Q 012010 210 KMRNIEWWMRKRQLP-----QGFRQRVRNYE 235 (473)
Q Consensus 210 ~~~~i~~~m~~~~i~-----~~L~~rv~~y~ 235 (473)
++.++.++++.+++| .+|..|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 467888999999988 57888888774
No 63
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=44.00 E-value=90 Score=27.91 Aligned_cols=50 Identities=8% Similarity=0.099 Sum_probs=33.7
Q ss_pred eEEEe-cCCC-EEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 293 KSLIF-TKGE-VITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 293 ~~~~~-~~ge-~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
....+ .||+ .-++- +..++++++++|.+.+...+ +|+.....+.+||+|=
T Consensus 36 ~VmvvgGpn~r~d~H~-~~tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fl 87 (177)
T PRK13264 36 IVMVVGGPNARTDFHY-DPGEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFL 87 (177)
T ss_pred EEEEEccCCccccccc-CCCceEEEEECCeEEEEEEc-CCceeeEEECCCCEEE
Confidence 34444 6663 33344 55689999999999886543 4433357899999883
No 64
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=43.42 E-value=22 Score=36.18 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=36.1
Q ss_pred CCCeecchhhhhhccCCcccCCCCceeEEEEeee-eeeeeeCHHHHHHHHHHhHH
Q 012010 339 PGNFSGDELLSWCLRRPFIERLPPSSSTLITLET-TEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 339 ~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~-~~ll~l~~~~f~~ll~~~P~ 392 (473)
+||-||..++. +..||.+++..-++ |.++.+++.+|.+++++-..
T Consensus 1 eGddfgklalv---------nd~praativl~ed~~~fl~vDk~~Fn~I~~~vEa 46 (573)
T KOG2378|consen 1 EGDDFGKLALV---------NDAPRAATIVLREDNCHFLRVDKHDFNRILHDVEA 46 (573)
T ss_pred CCcccchhccc---------cccccccceeeecCCCcceeecHHHHHHHHHhhhh
Confidence 58899997765 55677777776655 99999999999999987643
No 65
>PRK14762 membrane protein; Provisional
Probab=42.07 E-value=34 Score=19.74 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=17.0
Q ss_pred CcchhhHHHHHhhHHHHHHhhhhc
Q 012010 1 MTVFLIMFLFQYLPKIYHSVCLLR 24 (473)
Q Consensus 1 ~~~~~~~~~~~~l~rl~r~~~l~~ 24 (473)
|++++|++.+-|+.-++-+.-.++
T Consensus 1 mki~lw~i~iifligllvvtgvfk 24 (27)
T PRK14762 1 MKIILWAVLIIFLIGLLVVTGVFK 24 (27)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888777766555443
No 66
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=40.83 E-value=75 Score=25.82 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHh---------c-CC---CHHHHHhhCCHHHHHHHHHHHHHH
Q 012010 222 QLPQGFRQRVRNYERQRWAAM---------R-GV---DECEMISNLPEGLRRDIKYHLCLD 269 (473)
Q Consensus 222 ~i~~~L~~rv~~y~~~~~~~~---------~-~~---~~~~il~~Lp~~Lr~~i~~~~~~~ 269 (473)
-+|++++.+|..-....-... . .. -..++|..||+++|.+|.......
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 478899998844443221100 0 00 124899999999999999776544
No 67
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=40.26 E-value=1.8e+02 Score=22.88 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHHhcCCC
Q 012010 183 LLLVTMLIGNIKVFLHATT---SKKQAMQLKMRNIEWWMRKRQLP 224 (473)
Q Consensus 183 ~~~~a~iig~i~~i~~~~~---~~~~~~~~~~~~i~~~m~~~~i~ 224 (473)
+.+-+|..++++-=+..++ ....+.++++++.++.++++++.
T Consensus 46 v~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 46 VSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344455666665554554 45556777788888888888874
No 68
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=39.27 E-value=2e+02 Score=30.70 Aligned_cols=49 Identities=12% Similarity=0.263 Sum_probs=28.3
Q ss_pred HhhCCHHHHHHHHHHHHHHHh-----hcCCcCcCCCHHHHHHHHhhceEEEecC
Q 012010 251 ISNLPEGLRRDIKYHLCLDLV-----RQVPLFQHMDDLVLENICDRVKSLIFTK 299 (473)
Q Consensus 251 l~~Lp~~Lr~~i~~~~~~~~l-----~~~~~f~~~s~~~l~~L~~~l~~~~~~~ 299 (473)
|.+.|..|-+.++..+-...- ..-..+..++.+...+|+-++..+.|..
T Consensus 499 L~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnE 552 (971)
T KOG0501|consen 499 LYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNE 552 (971)
T ss_pred HHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhcc
Confidence 456788888888876643321 1113344556666666666665555543
No 69
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.71 E-value=6.4e+02 Score=28.10 Aligned_cols=70 Identities=23% Similarity=0.427 Sum_probs=48.4
Q ss_pred cCCcccccc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHHHHHHhcCCCHHHHHH
Q 012010 160 FGNLESTTE-----WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKK-QAMQLKMRNIEWWMRKRQLPQGFRQR 230 (473)
Q Consensus 160 yGdi~p~t~-----~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~-~~~~~~~~~i~~~m~~~~i~~~L~~r 230 (473)
+||.....+ ..-.+|.+++.++...++-.+|+-|++........+ .+.+.+-.++- .|-++++|+.++.+
T Consensus 605 ~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~i-L~lErs~p~~~r~~ 680 (782)
T KOG3676|consen 605 MGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAATI-LMLERSLPPALRKR 680 (782)
T ss_pred hhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH-HHHHhcCCHHHHHH
Confidence 888655433 245667777777778888888888888887776666 55555544443 45577899888887
No 70
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=35.88 E-value=2.5e+02 Score=31.16 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=32.5
Q ss_pred hhCCHHHHHHHHHHHHHHHhh-----cCCcCcCCCHHHHHHHHhhc
Q 012010 252 SNLPEGLRRDIKYHLCLDLVR-----QVPLFQHMDDLVLENICDRV 292 (473)
Q Consensus 252 ~~Lp~~Lr~~i~~~~~~~~l~-----~~~~f~~~s~~~l~~L~~~l 292 (473)
.+||++||+++..+...+... .-.+++++|++...+|..++
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL 416 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL 416 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence 579999999999888666554 33577889999888888765
No 71
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=35.46 E-value=3.4e+02 Score=30.32 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=28.1
Q ss_pred hhHHHHHHhhhhcccccccceeehhhhHHHHHHHHHHHH-----HHhhhhhHHHHHh
Q 012010 12 YLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFV-----ASHAAGACWYLLG 63 (473)
Q Consensus 12 ~l~rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~H~~aC~w~~ig 63 (473)
..+|++-++.....+.= .++..+..+..+++.++++++ +.|..--.||+.+
T Consensus 476 S~lrl~~i~t~n~~lGP-lqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~ 531 (822)
T KOG3609|consen 476 SFLKLFYIFTMNPSLGP-LQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLN 531 (822)
T ss_pred HHHHHHHHhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcc
Confidence 34566666666655442 244445555566665544443 3355555666664
No 72
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=34.56 E-value=93 Score=25.92 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=38.0
Q ss_pred ceEEEecCCCEEEcCCCc-cCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 292 VKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
+....+.||..+-..-.. .....+|++|.+++.. +|. ...+.+||++-.
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~---~g~--~~~l~~Gd~i~i 94 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL---EGE--KKELKAGDVIII 94 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEe---cCC--ceEecCCCEEEE
Confidence 446678999988877665 6789999999999865 233 367899998865
No 73
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=32.66 E-value=7.3e+02 Score=27.56 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=24.1
Q ss_pred hHHHHHHhhhhcccccccceeehhhhH-HHHHHHHHHHHHHhhhhhHHHHH
Q 012010 13 LPKIYHSVCLLRRMQNLSGYIFGTVWW-GIVLNMIAYFVASHAAGACWYLL 62 (473)
Q Consensus 13 l~rl~r~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~H~~aC~w~~i 62 (473)
.+|++.+++..+.+.-+. ......+. .+++.+++++++.=-+||.++.+
T Consensus 480 ~~rll~~~~~~~~lGp~~-i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l 529 (743)
T TIGR00870 480 WLNLLYIFRGNQHLGPLQ-IMIGRMILGDILRFLFIYAVVLFGFACGLNQL 529 (743)
T ss_pred HHHHHHHHhhchhcCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666555555543222 22233334 45555555544444556666655
No 74
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=31.81 E-value=1.1e+02 Score=25.96 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=37.4
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCc-----eEEE--EcCCCCeecc
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNI-----KSCC--MLGPGNFSGD 345 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~-----~~i~--~l~~G~~fGe 345 (473)
+....+.||....-.-....++.+|.+|...+.....++. .... .+.+||+|--
T Consensus 36 ~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~v 96 (144)
T PF00190_consen 36 VRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVV 96 (144)
T ss_dssp EEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE
T ss_pred EEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceee
Confidence 3445568888776554467899999999999766655541 2223 4999999854
No 75
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=31.74 E-value=1.6e+02 Score=27.52 Aligned_cols=78 Identities=19% Similarity=0.104 Sum_probs=45.3
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchh----hhhhccCCcccCCCCceeEE
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL----LSWCLRRPFIERLPPSSSTL 367 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~----l~~~~~~~~~~~~~~~~~~v 367 (473)
++...+++|+..-.+-...+....++.|++.+.. + |+.||++. .+...+..+..-..-+..++
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~----~---------g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~v 97 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSA----H---------GSTFGEIGTRMSVFERKPPDSVYVPAGSAFSV 97 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEee----c---------cchHhhcccccccccCCCCCeEEecCCceEEE
Confidence 4566778898887766655667778899998753 1 22232221 11110100000112357789
Q ss_pred EEeeeeeeeeeCHHH
Q 012010 368 ITLETTEAFGLEAED 382 (473)
Q Consensus 368 ~A~~~~~ll~l~~~~ 382 (473)
.|.++++|...+.-.
T Consensus 98 tA~t~~~vAvC~AP~ 112 (270)
T COG3718 98 TATTDLEVAVCSAPG 112 (270)
T ss_pred EeecceEEEEEeCCC
Confidence 999999888776544
No 76
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=30.20 E-value=2.2e+02 Score=21.94 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=42.7
Q ss_pred hceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEe
Q 012010 291 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITL 370 (473)
Q Consensus 291 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~ 370 (473)
.+....+.||..+-...-.+.+..||++|.... .++ .+.+|++.=. .+-+..+..+.
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d----~~~-----~~~~G~~~~~--------------p~g~~h~~~s~ 81 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD----GDG-----RYGAGDWLRL--------------PPGSSHTPRSD 81 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE----TTC-----EEETTEEEEE---------------TTEEEEEEES
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE----CCc-----cCCCCeEEEe--------------CCCCccccCcC
Confidence 355667889988877666777888999999863 222 3588887744 12335567788
Q ss_pred eeeeeee
Q 012010 371 ETTEAFG 377 (473)
Q Consensus 371 ~~~~ll~ 377 (473)
+.|.++.
T Consensus 82 ~gc~~~v 88 (91)
T PF12973_consen 82 EGCLILV 88 (91)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 8888875
No 77
>PRK11171 hypothetical protein; Provisional
Probab=29.94 E-value=2.2e+02 Score=27.29 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=32.5
Q ss_pred ceEEEecCCCEEEcCCC--ccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVITKEGD--PVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd--~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+....++||...-.... ..+++++|++|.+.+.. +|+ ...+.+||.+=
T Consensus 63 ~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~---~g~--~~~L~~GDsi~ 112 (266)
T PRK11171 63 QYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL---EGK--THALSEGGYAY 112 (266)
T ss_pred EEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE---CCE--EEEECCCCEEE
Confidence 34556788775433332 23689999999999864 343 36889999763
No 78
>PRK06771 hypothetical protein; Provisional
Probab=29.88 E-value=2.8e+02 Score=21.92 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHh
Q 012010 183 LLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRK 220 (473)
Q Consensus 183 ~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 220 (473)
.+.|-|+...++.+.+..+.+-...+.+++.+.+.+-.
T Consensus 11 ~~~~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi 48 (93)
T PRK06771 11 IFGFIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGI 48 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33445566677777777777777777777777666543
No 79
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=29.01 E-value=1.1e+02 Score=26.77 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=31.4
Q ss_pred HHHHHhhhhcccccccceeehhhhHHHHHHHHHHHHHHhhhhhHHHHHhhhhh
Q 012010 15 KIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRS 67 (473)
Q Consensus 15 rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~H~~aC~w~~ig~~~~ 67 (473)
|++|+.+..+.+........ .....+.+.++.++++.|+.||+++.+.....
T Consensus 72 R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~ 123 (200)
T PF00520_consen 72 RLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSD 123 (200)
T ss_dssp HHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccccccccccccccccccc-cccccccccccccccccccccchhheeccccc
Confidence 55555555554443322222 33345667777778888999999988864433
No 80
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=28.42 E-value=17 Score=37.68 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhccc--cCCccccc
Q 012010 146 ILFPIFWGLMTLST--FGNLESTT 167 (473)
Q Consensus 146 Yl~slYwai~t~tt--yGdi~p~t 167 (473)
-..|+||.+.|.+| |||..|.-
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~ 241 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDY 241 (1087)
T ss_pred eeeeEEEEEEEEeecccccccccc
Confidence 45689999999999 99999964
No 81
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=27.02 E-value=2.2e+02 Score=26.14 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=27.7
Q ss_pred CeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 311 QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 311 ~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
.++|++++|+.++.-...+|+-++....+||..
T Consensus 104 ~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~i 136 (209)
T COG2140 104 PEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVI 136 (209)
T ss_pred ccEEEEEeccEEEEEEcCCCcEEEEEecCCcEE
Confidence 469999999999887777787767888888865
No 82
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=26.97 E-value=1.1e+02 Score=23.16 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=28.0
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhcCCcCcCCCHHHHHHHHhhceE
Q 012010 248 CEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKS 294 (473)
Q Consensus 248 ~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~ 294 (473)
.++|..||+++|.++...+ --+...+++.+..+...++.
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~ 68 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEE 68 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHH
Confidence 3699999999999988654 33466788888887766543
No 83
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=26.52 E-value=1.9e+02 Score=28.97 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 012010 170 LEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRN 233 (473)
Q Consensus 170 ~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~rv~~ 233 (473)
...+...+..+++.+..++++-.+....-+...-.++.+-..+++++-.|+..-+++++.|+|+
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~ 239 (349)
T PRK12721 176 LPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRE 239 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 4556666666666666666555555554333333333333455666666666666666666443
No 84
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=26.33 E-value=2.5e+02 Score=28.84 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=12.0
Q ss_pred hhHHHHHHhhhhcccccc
Q 012010 12 YLPKIYHSVCLLRRMQNL 29 (473)
Q Consensus 12 ~l~rl~r~~~l~~~~~~~ 29 (473)
...|++|++|..+.+...
T Consensus 307 ~~lrll~~l~f~~~~~~~ 324 (425)
T PF08016_consen 307 LWLRLLKLLRFNRRLSLL 324 (425)
T ss_pred HHHHHhhheeecchHHHH
Confidence 356777777777766644
No 85
>PRK11171 hypothetical protein; Provisional
Probab=25.05 E-value=2.4e+02 Score=27.02 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=37.4
Q ss_pred hceEEEecCCCEEEcC-CCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 291 RVKSLIFTKGEVITKE-GDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 291 ~l~~~~~~~ge~I~~~-Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
.+....++||..+-.. .....+.++|++|+..+.. +++ ...+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~---~~~--~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL---NND--WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEE
Confidence 5666789999988774 5666799999999999854 343 36789999763
No 86
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=24.67 E-value=2.2e+02 Score=25.23 Aligned_cols=24 Identities=13% Similarity=0.643 Sum_probs=18.5
Q ss_pred cCcchHHHHHHHHHHHhhhccccCCccc
Q 012010 138 TNVSRLEKILFPIFWGLMTLSTFGNLES 165 (473)
Q Consensus 138 ~~~~~~~~Yl~slYwai~t~ttyGdi~p 165 (473)
.|-+.++.|++++|+.+.. |..++
T Consensus 16 kDiDKFE~YiY~ly~~~a~----Gklsm 39 (186)
T PF12983_consen 16 KDIDKFEEYIYSLYYDVAE----GKLSM 39 (186)
T ss_pred ccHHHHHHHHHHHHHHHhc----CcccH
Confidence 4567889999999998855 65554
No 87
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=24.19 E-value=2.9e+02 Score=23.81 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-------------hHHHHHHHHHHHHHHHHH
Q 012010 176 IIVLTSGLLLVTMLIGNIKVFLHATT-------------SKKQAMQLKMRNIEWWMR 219 (473)
Q Consensus 176 i~~ml~g~~~~a~iig~i~~i~~~~~-------------~~~~~~~~~~~~i~~~m~ 219 (473)
+++.++|..+||++++-+.+.-...+ -...+|+.+++...+.++
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k 66 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYK 66 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHH
Confidence 67889999999999987644322221 134568888888876665
No 88
>PRK09108 type III secretion system protein HrcU; Validated
Probab=24.14 E-value=2.3e+02 Score=28.50 Aligned_cols=63 Identities=2% Similarity=0.001 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 012010 170 LEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVR 232 (473)
Q Consensus 170 ~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~rv~ 232 (473)
...++.++..++..+..++++-.+....-+...-.++.+-.-+++++-+|+..-+++++.|+|
T Consensus 178 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrR 240 (353)
T PRK09108 178 AQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERK 240 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 555666666666666666666666655544444333344445566666666666666666643
No 89
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=24.00 E-value=1.1e+03 Score=26.70 Aligned_cols=40 Identities=25% Similarity=0.527 Sum_probs=23.9
Q ss_pred hhCCHHHHHHHHHHHHHHHhh----cCCcCcCCCHHHHHHHHhh
Q 012010 252 SNLPEGLRRDIKYHLCLDLVR----QVPLFQHMDDLVLENICDR 291 (473)
Q Consensus 252 ~~Lp~~Lr~~i~~~~~~~~l~----~~~~f~~~s~~~l~~L~~~ 291 (473)
+.+|+.||+++..+....+-. .-.+++.+|+....+++..
T Consensus 327 ~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~ 370 (823)
T PLN03192 327 NRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQH 370 (823)
T ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHH
Confidence 468888888888766433221 1233455666666666554
No 90
>PHA02909 hypothetical protein; Provisional
Probab=23.58 E-value=1.5e+02 Score=20.80 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhh
Q 012010 41 IVLNMIAYFVASHAAGACWYLLGIQ 65 (473)
Q Consensus 41 ~~~~l~~~~~~~H~~aC~w~~ig~~ 65 (473)
++...+.++-+...+||.+.++++.
T Consensus 38 filfviiflsmftilacsyvyiaii 62 (72)
T PHA02909 38 FILFVIIFLSMFTILACSYVYIAII 62 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444457899999999864
No 91
>PRK11677 hypothetical protein; Provisional
Probab=23.00 E-value=4.7e+02 Score=22.22 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 012010 204 KQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYER 236 (473)
Q Consensus 204 ~~~~~~~~~~i~~~m~~~~i~~~L~~rv~~y~~ 236 (473)
....++++++...-+. +-+++|.+||.
T Consensus 31 q~~le~eLe~~k~ele------~YkqeV~~HFa 57 (134)
T PRK11677 31 QQALQYELEKNKAELE------EYRQELVSHFA 57 (134)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 3444444554444442 34556666665
No 92
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.21 E-value=2.6e+02 Score=28.14 Aligned_cols=63 Identities=8% Similarity=0.147 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 012010 170 LEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVR 232 (473)
Q Consensus 170 ~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~rv~ 232 (473)
...+...+..+++.+..++++-.+....-+...-.++.+-..+++++-+|+..-+++++.|+|
T Consensus 185 ~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~R 247 (358)
T PRK13109 185 PELILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLR 247 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 444555555555555555555555555444333333444445666666666666666666643
No 93
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=22.17 E-value=3.9e+02 Score=20.92 Aligned_cols=63 Identities=6% Similarity=-0.119 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhcCCC--HHHHHhhCCHHHHHHHHHHHHHHHh
Q 012010 209 LKMRNIEWWMRK-RQLPQGFRQRVRNYERQRWAAMRGVD--ECEMISNLPEGLRRDIKYHLCLDLV 271 (473)
Q Consensus 209 ~~~~~i~~~m~~-~~i~~~L~~rv~~y~~~~~~~~~~~~--~~~il~~Lp~~Lr~~i~~~~~~~~l 271 (473)
+..+.+.++|.. .++++.-..++++.++..-....... -..+-..++++.|..+...+..-..
T Consensus 19 ~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~ 84 (104)
T cd07313 19 EERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY 84 (104)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 456677888877 49999999999998876554322221 1234455678888887776654433
No 94
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=22.13 E-value=1.4e+02 Score=23.21 Aligned_cols=29 Identities=10% Similarity=0.328 Sum_probs=19.5
Q ss_pred CeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 311 QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 311 ~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
.-.++|.+|.|++.. ++. -..+.+|+.|=
T Consensus 34 ~~vF~V~~G~v~Vti---~~~--~f~v~~G~~F~ 62 (85)
T PF11699_consen 34 TMVFYVIKGKVEVTI---HET--SFVVTKGGSFQ 62 (85)
T ss_dssp EEEEEEEESEEEEEE---TTE--EEEEETT-EEE
T ss_pred EEEEEEEeCEEEEEE---cCc--EEEEeCCCEEE
Confidence 347889999999965 222 24577888773
No 95
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=22.00 E-value=2.6e+02 Score=27.89 Aligned_cols=64 Identities=9% Similarity=0.099 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 012010 170 LEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRN 233 (473)
Q Consensus 170 ~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~rv~~ 233 (473)
...++..+..++..+..++++-.+....-+...-.++.+-..+++++-.|+..-+++++.|+|+
T Consensus 175 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~ 238 (342)
T TIGR01404 175 APIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRE 238 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 4445555555555555555554444444333333333333345666666666666666666543
No 96
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=21.47 E-value=1.6e+02 Score=21.06 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=17.2
Q ss_pred hcCCCHHHHHHHHHHHHHHHHH
Q 012010 220 KRQLPQGFRQRVRNYERQRWAA 241 (473)
Q Consensus 220 ~~~i~~~L~~rv~~y~~~~~~~ 241 (473)
..++|++|.+.|.+|.+|..+.
T Consensus 8 fqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHH
Confidence 3578888888888888887764
No 97
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=21.45 E-value=2.7e+02 Score=18.81 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 012010 173 VFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMR 212 (473)
Q Consensus 173 ~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~ 212 (473)
.++.+..+...+....+.+.+..+-.+....-.+++..-+
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~ 47 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISD 47 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555556666665555555555554443
No 98
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=21.42 E-value=2.5e+02 Score=18.49 Aligned_cols=37 Identities=5% Similarity=0.089 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Q 012010 204 KQAMQLKMRNIEWWMRKR-QLPQGFRQRVRNYERQRWA 240 (473)
Q Consensus 204 ~~~~~~~~~~i~~~m~~~-~i~~~L~~rv~~y~~~~~~ 240 (473)
...|.+-+.++.+||... +++++++.++.+++....+
T Consensus 4 ~~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~ 41 (45)
T smart00511 4 RSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLN 41 (45)
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 357899999999999864 6799999999999976544
No 99
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=21.40 E-value=5.4e+02 Score=23.88 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=38.2
Q ss_pred CEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEE--Eeeeeeeeee
Q 012010 301 EVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLI--TLETTEAFGL 378 (473)
Q Consensus 301 e~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~--A~~~~~ll~l 378 (473)
.-=-..++..+.+.||++|.+.+.. +|+. ..+.+|++.=- .+-+..+++ +.+++++..+
T Consensus 74 s~~~e~d~~ae~~lfVv~Ge~tv~~---~G~t--h~l~eggyayl--------------Ppgs~~~~~N~~~~~~rfhw~ 134 (264)
T COG3257 74 SQRPEGDEGAETFLFVVSGEITVKA---EGKT--HALREGGYAYL--------------PPGSGWTLRNAQKEDSRFHWI 134 (264)
T ss_pred CCCCCCCCcceEEEEEEeeeEEEEE---cCeE--EEeccCCeEEe--------------CCCCcceEeeccCCceEEEEE
Confidence 3333344566889999999999854 3543 56788876421 011233444 7778888777
Q ss_pred CH
Q 012010 379 EA 380 (473)
Q Consensus 379 ~~ 380 (473)
.|
T Consensus 135 rk 136 (264)
T COG3257 135 RK 136 (264)
T ss_pred ee
Confidence 55
No 100
>COG4325 Predicted membrane protein [Function unknown]
Probab=21.29 E-value=5.4e+02 Score=26.15 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=43.8
Q ss_pred cCcchHHHHHHHHHHHhhhccc-------cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 012010 138 TNVSRLEKILFPIFWGLMTLST-------FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 202 (473)
Q Consensus 138 ~~~~~~~~Yl~slYwai~t~tt-------yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~ 202 (473)
.+.-....++..|=|++..+.| +|...|. .-...+++..+++.+.+-|.+..++..++--+.
T Consensus 125 ~nqvvLa~FlctFvysl~vlrtvg~e~d~~g~FIp~---~avtv~lLlaiisig~~iyfl~~l~~siq~~n~ 193 (464)
T COG4325 125 PNQVVLAIFLCTFVYSLGVLRTVGEERDGQGAFIPK---VAVTVSLLLAIISIGALIYFLHHLMHSIQIDNI 193 (464)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhccCccccceeh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888888888877 3446664 345667777788888888888888876654443
No 101
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=21.09 E-value=2.1e+02 Score=19.91 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHhcCCCHHHHHh
Q 012010 211 MRNIEWWMRKRQLP-------QGFRQRVRNYERQRWAAMRGVDECEMIS 252 (473)
Q Consensus 211 ~~~i~~~m~~~~i~-------~~L~~rv~~y~~~~~~~~~~~~~~~il~ 252 (473)
+..+..|.+..+++ ++|-..|+++|. ...++|.+++.
T Consensus 3 ~~tLrrY~~~~~l~~~~~~sK~qLa~~V~kHF~-----s~~v~E~evI~ 46 (53)
T PF13867_consen 3 TPTLRRYKKHYKLPERPRSSKEQLANAVRKHFN-----SQPVDENEVIA 46 (53)
T ss_dssp HHHHHHHHHHTT----SS--HHHHHHHHHHHHT-----T----HHHHHH
T ss_pred hHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHH
Confidence 34567788877776 466666677664 23467776653
No 102
>PHA00672 hypothetical protein
Probab=20.83 E-value=5.1e+02 Score=21.74 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=27.3
Q ss_pred hceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEE
Q 012010 291 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQ 325 (473)
Q Consensus 291 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~ 325 (473)
+.++...++|..+.-.=-..+.+ +|.+|.+.++.
T Consensus 48 YARei~IPkGt~LtG~~hkf~~~-ii~sG~itV~t 81 (152)
T PHA00672 48 YARTIRIPAGVALTGALIKVSTV-LIFSGHATVFI 81 (152)
T ss_pred eEEEEeccCceeeeeeeeEeeEE-EEecccEEEEe
Confidence 45677889999888766666777 99999999986
No 103
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=20.59 E-value=1.4e+02 Score=18.57 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCC-----HHHHHHHHHH
Q 012010 211 MRNIEWWMRKRQLP-----QGFRQRVRNY 234 (473)
Q Consensus 211 ~~~i~~~m~~~~i~-----~~L~~rv~~y 234 (473)
..++.+.++..++| .+|++|+.+|
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 45677888888877 4577777665
No 104
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=20.54 E-value=3e+02 Score=27.56 Aligned_cols=63 Identities=10% Similarity=0.161 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 012010 170 LEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVR 232 (473)
Q Consensus 170 ~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~rv~ 232 (473)
...+..++..++..+..++++-.+....-+...-.++.+-..+++++-+|+..-+++++.|+|
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR 238 (347)
T TIGR00328 176 ITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIR 238 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 444555555555555555555444444433333333333334556666666666666666543
No 105
>PRK08156 type III secretion system protein SpaS; Validated
Probab=20.41 E-value=3.1e+02 Score=27.67 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 012010 170 LEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVR 232 (473)
Q Consensus 170 ~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~rv~ 232 (473)
...+..++..++..+..++++-.+....-+...-.++.+-..+++++-.|+..-+++++.|+|
T Consensus 171 ~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R 233 (361)
T PRK08156 171 IVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRR 233 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 344444445555555555555444444433333333333334555555555555555555543
No 106
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=20.32 E-value=3.2e+02 Score=24.23 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=28.0
Q ss_pred EecCCCEEEcC-CCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 296 IFTKGEVITKE-GDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 296 ~~~~ge~I~~~-Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
.+.||...-.. -....++.+|++|.+.+.. +++ ...+.+||.+
T Consensus 113 ~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~ 156 (185)
T PRK09943 113 TYQPGTTTGERIKHQGEEIGTVLEGEIVLTI---NGQ--DYHLVAGQSY 156 (185)
T ss_pred EccCCCCcccccccCCcEEEEEEEeEEEEEE---CCE--EEEecCCCEE
Confidence 45666532211 1234689999999999854 333 3679999976
Done!