Query 012010
Match_columns 473
No_of_seqs 393 out of 2829
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 19:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ptm_A Hyperpolarization-activ 100.0 2.3E-32 7.8E-37 250.8 24.1 189 199-401 2-190 (198)
2 3ukn_A Novel protein similar t 100.0 1.8E-33 6.2E-38 261.0 15.2 204 194-411 1-205 (212)
3 3bpz_A Potassium/sodium hyperp 100.0 1.4E-31 4.8E-36 246.4 21.9 184 198-396 2-185 (202)
4 3beh_A MLL3241 protein; transm 100.0 7.9E-30 2.7E-34 255.2 10.0 179 143-396 159-339 (355)
5 4f8a_A Potassium voltage-gated 99.8 2.7E-20 9.1E-25 163.6 16.2 143 247-402 5-148 (160)
6 3gyd_A CNMP-BD protein, cyclic 99.8 1.2E-18 4E-23 157.9 15.4 148 247-404 13-165 (187)
7 3mdp_A Cyclic nucleotide-bindi 99.8 2.4E-18 8.3E-23 147.7 11.9 127 269-405 6-136 (142)
8 3ocp_A PRKG1 protein; serine/t 99.8 2.5E-18 8.4E-23 147.6 11.8 127 253-392 7-133 (139)
9 2pqq_A Putative transcriptiona 99.7 1.6E-17 5.4E-22 143.7 14.6 118 269-396 5-123 (149)
10 2z69_A DNR protein; beta barre 99.7 1.5E-17 5.2E-22 144.8 14.3 129 268-406 11-141 (154)
11 4ev0_A Transcription regulator 99.7 3.6E-17 1.2E-21 151.0 16.4 149 271-433 1-150 (216)
12 3idb_B CAMP-dependent protein 99.7 2.3E-17 7.9E-22 145.3 14.1 120 263-392 32-152 (161)
13 3dn7_A Cyclic nucleotide bindi 99.7 1.4E-17 4.6E-22 151.3 12.4 127 268-404 6-134 (194)
14 3d0s_A Transcriptional regulat 99.7 3.9E-17 1.3E-21 152.1 12.1 129 268-406 5-134 (227)
15 3dv8_A Transcriptional regulat 99.7 1E-16 3.5E-21 148.3 14.6 128 269-406 3-133 (220)
16 3fx3_A Cyclic nucleotide-bindi 99.7 4E-17 1.4E-21 153.1 11.5 128 267-404 9-137 (237)
17 3e97_A Transcriptional regulat 99.7 1.2E-16 4.2E-21 149.1 14.5 129 268-406 5-134 (231)
18 3dkw_A DNR protein; CRP-FNR, H 99.7 6.6E-17 2.3E-21 150.4 12.2 129 268-406 8-138 (227)
19 1vp6_A CNBD, cyclic-nucleotide 99.7 1.9E-16 6.6E-21 135.3 13.7 123 267-405 9-131 (138)
20 3iwz_A CAP-like, catabolite ac 99.7 3.1E-16 1.1E-20 146.1 14.8 130 268-406 10-145 (230)
21 3pna_A CAMP-dependent protein 99.7 3.2E-16 1.1E-20 136.9 13.4 114 266-392 35-148 (154)
22 4ava_A Lysine acetyltransferas 99.7 4.8E-16 1.7E-20 153.5 15.5 123 268-401 12-134 (333)
23 3shr_A CGMP-dependent protein 99.7 7.5E-16 2.6E-20 149.7 16.0 131 249-392 19-149 (299)
24 2gau_A Transcriptional regulat 99.7 2.4E-16 8.3E-21 147.2 12.1 124 273-406 14-138 (232)
25 1zyb_A Transcription regulator 99.7 4.7E-16 1.6E-20 145.5 13.5 127 268-403 17-146 (232)
26 3ryp_A Catabolite gene activat 99.6 1.5E-15 5E-20 139.4 14.2 122 275-405 2-124 (210)
27 1wgp_A Probable cyclic nucleot 99.6 2.9E-16 1E-20 134.0 8.6 118 269-392 6-131 (137)
28 2oz6_A Virulence factor regula 99.6 2.6E-15 8.8E-20 137.5 14.9 117 280-405 1-121 (207)
29 2d93_A RAP guanine nucleotide 99.6 1.1E-16 3.6E-21 136.5 5.2 124 256-392 3-128 (134)
30 2qcs_B CAMP-dependent protein 99.6 1.1E-14 3.9E-19 140.6 17.3 124 267-400 155-280 (291)
31 3shr_A CGMP-dependent protein 99.6 1.9E-15 6.5E-20 146.8 10.5 121 266-396 154-276 (299)
32 3kcc_A Catabolite gene activat 99.6 7.1E-15 2.4E-19 140.0 14.1 119 278-405 55-174 (260)
33 2fmy_A COOA, carbon monoxide o 99.6 3.4E-15 1.2E-19 138.2 11.1 120 269-406 4-124 (220)
34 1ft9_A Carbon monoxide oxidati 99.6 3E-15 1E-19 138.9 9.4 142 270-433 1-143 (222)
35 3of1_A CAMP-dependent protein 99.6 8.1E-15 2.8E-19 137.7 12.4 114 267-392 123-236 (246)
36 1o5l_A Transcriptional regulat 99.6 4.1E-15 1.4E-19 137.2 9.9 122 274-404 4-126 (213)
37 2qcs_B CAMP-dependent protein 99.6 3.3E-14 1.1E-18 137.3 16.3 126 265-404 35-160 (291)
38 3tnp_B CAMP-dependent protein 99.6 1.9E-14 6.4E-19 146.5 14.4 119 264-392 140-259 (416)
39 3of1_A CAMP-dependent protein 99.6 1E-14 3.6E-19 136.9 11.1 116 267-396 5-120 (246)
40 4din_B CAMP-dependent protein 99.6 8.9E-15 3.1E-19 147.2 10.7 122 265-396 244-367 (381)
41 1o7f_A CAMP-dependent RAP1 gua 99.5 3.1E-14 1.1E-18 147.1 14.0 129 254-392 27-158 (469)
42 3e6c_C CPRK, cyclic nucleotide 99.5 1.4E-14 4.7E-19 137.0 10.0 122 271-405 11-133 (250)
43 4din_B CAMP-dependent protein 99.5 4.2E-14 1.4E-18 142.3 13.7 125 265-403 126-250 (381)
44 3tnp_B CAMP-dependent protein 99.5 2.4E-14 8.4E-19 145.7 11.6 116 268-392 266-388 (416)
45 2bgc_A PRFA; bacterial infecti 99.5 2.5E-13 8.7E-18 127.3 14.8 119 278-406 2-125 (238)
46 3la7_A Global nitrogen regulat 99.5 2.1E-13 7.3E-18 128.3 12.9 114 282-404 30-148 (243)
47 1o7f_A CAMP-dependent RAP1 gua 99.5 2.7E-13 9.2E-18 140.1 13.9 116 265-392 333-450 (469)
48 4h33_A LMO2059 protein; bilaye 99.5 1.2E-13 4.2E-18 117.7 8.0 90 146-236 44-135 (137)
49 3vou_A ION transport 2 domain 99.4 7.9E-13 2.7E-17 114.5 13.0 84 146-230 53-148 (148)
50 4f7z_A RAP guanine nucleotide 99.4 5.7E-13 2E-17 150.2 13.2 132 250-392 24-158 (999)
51 3cf6_E RAP guanine nucleotide 99.4 1E-12 3.4E-17 141.5 11.5 131 249-392 13-145 (694)
52 2a9h_A Voltage-gated potassium 99.4 1.3E-12 4.5E-17 113.4 9.6 61 144-205 83-145 (155)
53 2ih3_C Voltage-gated potassium 99.4 1.5E-12 5E-17 108.8 8.7 58 144-202 60-119 (122)
54 1orq_C Potassium channel; volt 99.4 1.5E-12 5.3E-17 120.9 9.7 55 144-199 164-220 (223)
55 4f7z_A RAP guanine nucleotide 99.3 8.8E-12 3E-16 140.5 14.7 115 265-391 333-449 (999)
56 3b02_A Transcriptional regulat 99.3 4.2E-12 1.4E-16 115.1 9.5 92 295-403 2-94 (195)
57 3eff_K Voltage-gated potassium 99.2 2.6E-11 9E-16 103.8 9.1 57 145-202 40-98 (139)
58 2zcw_A TTHA1359, transcription 99.2 1.5E-11 5.1E-16 112.0 8.0 98 288-403 1-101 (202)
59 2r9r_B Paddle chimera voltage 99.1 1.2E-10 4.1E-15 120.9 9.6 58 144-202 374-433 (514)
60 2q67_A Potassium channel prote 99.1 6.8E-10 2.3E-14 91.3 10.8 60 145-205 49-110 (114)
61 2k1e_A Water soluble analogue 99.0 1E-10 3.5E-15 94.5 3.1 57 145-202 40-98 (103)
62 3ouf_A Potassium channel prote 98.9 4.4E-09 1.5E-13 83.7 9.1 53 146-199 33-87 (97)
63 3ldc_A Calcium-gated potassium 98.9 8.6E-09 2.9E-13 79.3 9.3 51 146-197 29-81 (82)
64 3pjs_K KCSA, voltage-gated pot 98.8 5.2E-10 1.8E-14 98.5 -1.7 61 144-205 66-128 (166)
65 1xl4_A Inward rectifier potass 98.6 9.2E-08 3.2E-12 92.0 7.7 54 145-199 82-137 (301)
66 1p7b_A Integral membrane chann 98.5 8.8E-08 3E-12 93.2 6.8 56 145-201 96-153 (333)
67 3um7_A Potassium channel subfa 98.5 3.7E-07 1.3E-11 87.5 9.3 54 145-199 115-170 (309)
68 2qks_A KIR3.1-prokaryotic KIR 98.4 9.3E-07 3.2E-11 85.7 9.1 56 145-201 78-135 (321)
69 4gx0_A TRKA domain protein; me 98.2 4.5E-06 1.5E-10 88.0 10.4 51 146-197 52-105 (565)
70 3um7_A Potassium channel subfa 98.1 1.4E-06 4.9E-11 83.5 4.7 59 145-204 224-290 (309)
71 3ukm_A Potassium channel subfa 98.1 1.1E-05 3.7E-10 76.2 10.0 53 146-198 202-262 (280)
72 3sya_A G protein-activated inw 98.1 4.8E-06 1.7E-10 80.8 7.6 57 145-201 91-150 (340)
73 3ukm_A Potassium channel subfa 98.1 5.5E-06 1.9E-10 78.2 7.0 52 145-197 93-146 (280)
74 3spc_A Inward-rectifier K+ cha 97.9 3.5E-05 1.2E-09 74.9 9.2 56 145-201 94-153 (343)
75 3rvy_A ION transport protein; 97.8 3.1E-05 1.1E-09 74.1 7.3 60 143-203 178-245 (285)
76 1lnq_A MTHK channels, potassiu 97.8 1.9E-06 6.4E-11 84.7 -2.1 54 146-200 46-101 (336)
77 4dxw_A Navrh, ION transport pr 91.4 0.59 2E-05 42.4 8.3 55 144-198 164-224 (229)
78 2ozj_A Cupin 2, conserved barr 77.0 18 0.00061 28.0 9.5 66 294-378 42-107 (114)
79 3fjs_A Uncharacterized protein 75.2 19 0.00064 28.2 9.1 49 292-345 38-86 (114)
80 3rns_A Cupin 2 conserved barre 72.7 17 0.00058 32.5 9.3 69 291-378 38-106 (227)
81 1yhf_A Hypothetical protein SP 70.8 27 0.00091 26.9 9.1 48 292-344 42-89 (115)
82 2pfw_A Cupin 2, conserved barr 66.4 38 0.0013 26.0 9.1 68 292-378 36-103 (116)
83 3lwc_A Uncharacterized protein 59.8 62 0.0021 25.5 10.3 47 293-345 43-89 (119)
84 1dgw_A Canavalin; duplicated s 57.7 12 0.00041 32.1 4.9 52 292-344 43-94 (178)
85 4e2g_A Cupin 2 conserved barre 55.5 56 0.0019 25.4 8.4 48 292-344 43-90 (126)
86 2gu9_A Tetracenomycin polyketi 50.0 39 0.0013 25.5 6.4 48 292-344 23-73 (113)
87 3rns_A Cupin 2 conserved barre 49.8 64 0.0022 28.6 8.6 69 291-378 154-223 (227)
88 1j58_A YVRK protein; cupin, de 49.5 27 0.00092 33.9 6.5 53 292-344 81-133 (385)
89 2vqa_A SLL1358 protein, MNCA; 48.6 30 0.001 33.1 6.7 53 292-344 54-107 (361)
90 3d0j_A Uncharacterized protein 48.6 60 0.0021 26.6 7.3 62 306-381 46-110 (140)
91 1v70_A Probable antibiotics sy 48.4 47 0.0016 24.5 6.6 48 292-344 30-78 (105)
92 1j58_A YVRK protein; cupin, de 46.4 39 0.0013 32.7 7.1 54 292-345 259-313 (385)
93 3h8u_A Uncharacterized conserv 46.1 61 0.0021 25.2 7.2 48 292-343 41-89 (125)
94 2i45_A Hypothetical protein; n 44.9 29 0.001 26.3 4.9 69 297-383 35-103 (107)
95 3es1_A Cupin 2, conserved barr 44.0 30 0.001 29.6 5.1 48 292-343 81-128 (172)
96 2vqa_A SLL1358 protein, MNCA; 42.9 47 0.0016 31.7 7.0 53 292-344 236-289 (361)
97 3d82_A Cupin 2, conserved barr 42.6 69 0.0024 23.5 6.7 51 311-380 51-101 (102)
98 1fi2_A Oxalate oxidase, germin 42.2 57 0.002 28.3 6.9 53 292-344 74-130 (201)
99 3ibm_A Cupin 2, conserved barr 42.0 1.1E+02 0.0036 25.6 8.4 47 293-344 59-105 (167)
100 2fqp_A Hypothetical protein BP 41.9 27 0.00092 26.1 4.1 50 293-345 21-71 (97)
101 2pyt_A Ethanolamine utilizatio 41.8 1.3E+02 0.0045 24.1 8.6 45 294-345 61-105 (133)
102 3bcw_A Uncharacterized protein 40.4 82 0.0028 25.0 7.0 45 296-345 55-99 (123)
103 3es4_A Uncharacterized protein 39.8 34 0.0012 27.2 4.4 45 296-345 48-92 (116)
104 2d5f_A Glycinin A3B4 subunit; 38.7 59 0.002 32.8 7.1 60 285-344 362-423 (493)
105 1sfn_A Conserved hypothetical 38.0 1.6E+02 0.0055 26.3 9.5 45 293-344 53-97 (246)
106 1yfu_A 3-hydroxyanthranilate-3 37.7 54 0.0019 27.9 5.6 36 309-345 54-89 (174)
107 1uij_A Beta subunit of beta co 37.4 35 0.0012 33.7 5.1 52 291-343 50-101 (416)
108 2bnm_A Epoxidase; oxidoreducta 36.5 1.1E+02 0.0038 25.9 7.9 49 295-344 122-173 (198)
109 2cav_A Protein (canavalin); vi 36.0 35 0.0012 34.0 4.9 52 291-343 87-138 (445)
110 4e2q_A Ureidoglycine aminohydr 35.5 64 0.0022 29.6 6.2 70 293-380 73-142 (266)
111 2xp1_A SPT6; transcription, IW 35.1 99 0.0034 26.4 7.0 38 273-316 13-50 (178)
112 3jzv_A Uncharacterized protein 34.8 47 0.0016 28.0 4.9 45 294-343 57-101 (166)
113 1zvf_A 3-hydroxyanthranilate 3 34.6 48 0.0017 28.3 4.7 37 308-345 52-92 (176)
114 2f4p_A Hypothetical protein TM 34.5 1E+02 0.0034 25.1 6.9 48 293-344 51-98 (147)
115 3kgz_A Cupin 2 conserved barre 34.3 50 0.0017 27.5 4.9 45 294-343 48-92 (156)
116 3c3v_A Arachin ARAH3 isoform; 33.9 67 0.0023 32.5 6.6 58 286-343 368-427 (510)
117 1x82_A Glucose-6-phosphate iso 33.7 54 0.0019 28.2 5.2 34 311-344 97-130 (190)
118 1o4t_A Putative oxalate decarb 33.6 68 0.0023 25.5 5.5 46 293-343 60-106 (133)
119 3kg2_A Glutamate receptor 2; I 33.6 50 0.0017 35.3 6.0 54 145-199 563-617 (823)
120 2o1q_A Putative acetyl/propion 33.5 69 0.0024 26.2 5.6 50 292-345 46-96 (145)
121 2b8m_A Hypothetical protein MJ 33.5 41 0.0014 25.9 4.1 47 294-344 31-77 (117)
122 1y9q_A Transcriptional regulat 33.2 94 0.0032 26.4 6.8 46 294-344 108-155 (192)
123 2q30_A Uncharacterized protein 33.1 1.4E+02 0.0048 22.1 7.2 48 293-344 36-85 (110)
124 1fxz_A Glycinin G1; proglycini 33.0 70 0.0024 32.1 6.5 54 290-343 338-393 (476)
125 3fz3_A Prunin; TREE NUT allerg 32.7 86 0.003 31.8 7.1 60 285-344 389-450 (531)
126 1o5u_A Novel thermotoga mariti 32.6 1.6E+02 0.0055 22.2 10.3 48 292-345 33-80 (101)
127 2ea7_A 7S globulin-1; beta bar 32.3 46 0.0016 33.0 5.0 52 291-343 62-113 (434)
128 4axo_A EUTQ, ethanolamine util 32.2 1.8E+02 0.006 24.1 7.9 31 309-344 83-113 (151)
129 3i7d_A Sugar phosphate isomera 30.7 60 0.002 27.1 4.9 48 292-344 45-94 (163)
130 1vj2_A Novel manganese-contain 30.0 60 0.002 25.5 4.6 47 293-344 51-97 (126)
131 2e9q_A 11S globulin subunit be 29.8 1E+02 0.0035 30.7 7.1 60 285-344 317-378 (459)
132 2qnk_A 3-hydroxyanthranilate 3 29.5 93 0.0032 28.7 6.1 63 302-380 44-106 (286)
133 4b29_A Dimethylsulfoniopropion 29.5 74 0.0025 28.2 5.3 32 308-343 150-181 (217)
134 2vpv_A Protein MIF2, MIF2P; nu 29.0 54 0.0019 27.8 4.2 46 295-345 93-140 (166)
135 1sfn_A Conserved hypothetical 28.9 1.1E+02 0.0039 27.3 6.8 49 291-344 166-215 (246)
136 3lag_A Uncharacterized protein 28.7 18 0.00061 27.6 1.0 50 292-343 19-69 (98)
137 3l2h_A Putative sugar phosphat 28.7 64 0.0022 26.6 4.7 46 293-343 49-96 (162)
138 2phl_A Phaseolin; plant SEED s 28.0 58 0.002 31.9 4.8 51 291-342 53-103 (397)
139 3bu7_A Gentisate 1,2-dioxygena 27.1 59 0.002 31.8 4.6 77 292-387 296-375 (394)
140 3cew_A Uncharacterized cupin p 26.4 91 0.0031 24.2 5.1 48 292-344 28-77 (125)
141 3bu7_A Gentisate 1,2-dioxygena 25.9 50 0.0017 32.3 3.9 49 293-345 126-174 (394)
142 1lr5_A Auxin binding protein 1 25.9 73 0.0025 26.3 4.6 52 293-344 44-99 (163)
143 3h7j_A Bacilysin biosynthesis 25.6 1.1E+02 0.0038 27.2 6.0 47 292-343 36-82 (243)
144 2opk_A Hypothetical protein; p 24.7 71 0.0024 24.6 4.0 35 308-345 51-85 (112)
145 3ksc_A LEGA class, prolegumin; 24.4 1.4E+02 0.0049 30.0 7.0 59 285-343 353-413 (496)
146 1sq4_A GLXB, glyoxylate-induce 24.4 1.2E+02 0.004 27.9 6.0 49 290-343 191-240 (278)
147 3s7i_A Allergen ARA H 1, clone 24.3 79 0.0027 31.1 5.0 51 292-343 46-96 (418)
148 4i4a_A Similar to unknown prot 24.2 2.4E+02 0.0083 21.6 10.2 81 293-392 37-121 (128)
149 1sef_A Conserved hypothetical 23.7 1.2E+02 0.0041 27.6 6.0 48 292-344 184-232 (274)
150 1juh_A Quercetin 2,3-dioxygena 23.1 1E+02 0.0036 29.3 5.6 35 310-344 71-105 (350)
151 2q1z_B Anti-sigma factor CHRR, 23.0 1.2E+02 0.0041 26.1 5.5 46 291-345 126-171 (195)
152 3h7j_A Bacilysin biosynthesis 22.7 1.8E+02 0.0062 25.8 6.9 47 294-345 149-196 (243)
153 2l53_B CAM, voltage-gated sodi 21.9 77 0.0026 18.7 2.6 21 410-430 4-24 (31)
154 3nw4_A Gentisate 1,2-dioxygena 21.0 2.3E+02 0.0078 27.3 7.4 77 293-388 282-358 (368)
155 2qnk_A 3-hydroxyanthranilate 3 20.7 3.3E+02 0.011 25.0 8.0 69 292-380 209-277 (286)
156 2d40_A Z3393, putative gentisa 20.4 3.5E+02 0.012 25.6 8.8 74 293-385 271-344 (354)
157 2lh0_A Histone chaperone RTT10 20.2 56 0.0019 23.3 2.1 14 250-263 8-21 (70)
158 2kxw_B Sodium channel protein 20.1 82 0.0028 17.9 2.4 19 411-429 5-23 (27)
159 1rc6_A Hypothetical protein YL 20.0 1.5E+02 0.0052 26.6 5.8 46 294-344 63-110 (261)
No 1
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=100.00 E-value=2.3e-32 Score=250.77 Aligned_cols=189 Identities=21% Similarity=0.359 Sum_probs=173.4
Q ss_pred hcchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCHHHHHHHHHHHHHHHhhcCCcCc
Q 012010 199 ATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQ 278 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~f~ 278 (473)
+++++..+|+++++.+++||+.+++|++||.||++|++|.|+ .++.+++++++.||++||.++..+++.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 678999999999999999999999999999999999999998 4788999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCccc
Q 012010 279 HMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIE 358 (473)
Q Consensus 279 ~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~ 358 (473)
+++++++..|+..++.+.|+|||+|+++||.++.+|||.+|.|+++. .+|+ .+..+++|++||+.+++
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~-~~~~l~~G~~fGe~~~~--------- 148 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV-IATSLSDGSYFGEICLL--------- 148 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC-EEEEECTTCEESCHHHH---------
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe-EEEEecCCCEechHHHc---------
Confidence 99999999999999999999999999999999999999999999976 5665 68999999999998765
Q ss_pred CCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHH
Q 012010 359 RLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKR 401 (473)
Q Consensus 359 ~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~ 401 (473)
.+.++.++++|.++|+++.|++++|.++++++|+ +....++.
T Consensus 149 ~~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~-~~~~~~~~ 190 (198)
T 2ptm_A 149 TRERRVASVKCETYCTLFSLSVQHFNQVLDEFPA-MRKTMEEI 190 (198)
T ss_dssp HSSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHH
T ss_pred CCCccceEEEEeeEEEEEEEeHHHHHHHHHHChH-HHHHHHHH
Confidence 3456789999999999999999999999999999 66544433
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=100.00 E-value=1.8e-33 Score=260.95 Aligned_cols=204 Identities=21% Similarity=0.412 Sum_probs=175.0
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCHHHHHHHHHHHHHHHhhc
Q 012010 194 KVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQ 273 (473)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~ 273 (473)
|+|+++++++..+|+++|+.+++||+.+++|++||.||++||+|.|+.+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 568899999999999999999999999999999999999999999998889999999999999999999999997777 8
Q ss_pred CCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhcc
Q 012010 274 VPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLR 353 (473)
Q Consensus 274 ~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~ 353 (473)
+|+|++++++++..|+..++.+.|+|||+|+++||.++++|||.+|.|+++. +| ..+..+++|++||+.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~-~~~~~l~~G~~fGe~~~~---- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DN-TVLAILGKGDLIGSDSLT---- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SS-CEEEEECTTCEEECSCCS----
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CC-eEEEEecCCCCcCcHHhc----
Confidence 9999999999999999999999999999999999999999999999999975 34 558999999999996554
Q ss_pred CCcccCCC-CceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCcc
Q 012010 354 RPFIERLP-PSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWR 411 (473)
Q Consensus 354 ~~~~~~~~-~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~~s~~~~ 411 (473)
.+.. ++.++++|.++|+++.|++++|.++++++|+ +....++...+..+...+
T Consensus 152 ----~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~-~~~~~~~~l~~~l~~~lr 205 (212)
T 3ukn_A 152 ----KEQVIKTNANVKALTYCDLQYISLKGLREVLRLYPE-YAQKFVSEIQHDLTYNLR 205 (212)
T ss_dssp ----SSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHHEEEECB
T ss_pred ----cCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChH-HHHHHHHHHHHhhccccc
Confidence 2332 7899999999999999999999999999999 777677776666655544
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=100.00 E-value=1.4e-31 Score=246.37 Aligned_cols=184 Identities=23% Similarity=0.407 Sum_probs=168.9
Q ss_pred hhcchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCHHHHHHHHHHHHHHHhhcCCcC
Q 012010 198 HATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLF 277 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~f 277 (473)
++++++..+|+++++.+++||+.+++|++||.||++|++|.|+. ++.+++++++.||++||.++..+.+.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 46789999999999999999999999999999999999999984 78899999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcc
Q 012010 278 QHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFI 357 (473)
Q Consensus 278 ~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~ 357 (473)
.+++++++..|+..++...|+||++|+++||.++.+|||.+|.|+++. ++|++ ..+++|++||+.+++
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~--~~l~~G~~fGe~~~~-------- 148 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKE--MKLSDGSYFGEICLL-------- 148 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCC--EEEETTCEECHHHHH--------
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--CCCeE--EEEcCCCEeccHHHh--------
Confidence 999999999999999999999999999999999999999999999964 56665 368999999998765
Q ss_pred cCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHH
Q 012010 358 ERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVK 396 (473)
Q Consensus 358 ~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~ 396 (473)
.+.++.++++|.++|+++.|++++|.++++++|+ +..
T Consensus 149 -~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~-~~~ 185 (202)
T 3bpz_A 149 -TRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM-MRR 185 (202)
T ss_dssp -HCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGG-GHH
T ss_pred -cCCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHH-HHH
Confidence 3456788999999999999999999999999998 554
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.96 E-value=7.9e-30 Score=255.23 Aligned_cols=179 Identities=26% Similarity=0.388 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHh
Q 012010 143 LEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRK 220 (473)
Q Consensus 143 ~~~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 220 (473)
+..|..|+||+++|||| |||++|.|. .|+++++++|++|.+++++.+|.+++.+.+... +
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~-~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~------~----------- 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSF-AGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR------R----------- 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-----------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-----------
Confidence 34699999999999999 999999986 999999999999999999999999877643110 0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCHHHHHHHHHHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCC
Q 012010 221 RQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKG 300 (473)
Q Consensus 221 ~~i~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~g 300 (473)
+++. ...+.++++|+|+++++++++++...++.+.++||
T Consensus 221 -----------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~g 259 (355)
T 3beh_A 221 -----------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAG 259 (355)
T ss_dssp -----------HHHH------------------------------HHHC-------------------------------
T ss_pred -----------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCC
Confidence 0000 02367888899999999999999999999999999
Q ss_pred CEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCH
Q 012010 301 EVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEA 380 (473)
Q Consensus 301 e~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~ 380 (473)
|+|+++||.++++|||.+|.|+++..+ ...+++|++|||.+++ .+.++..+++|.++|+++.+++
T Consensus 260 e~I~~~G~~~~~ly~I~~G~v~v~~~~------~~~l~~G~~fGe~~~l---------~~~~~~~~~~A~~~~~l~~i~~ 324 (355)
T 3beh_A 260 AVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGEMALI---------SGEPRSATVSAATTVSLLSLHS 324 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEeCCCcCceEEEEEeeEEEEEECC------eeEECCCCEEeehHHh---------CCCCcceEEEECccEEEEEEeH
Confidence 999999999999999999999997642 2579999999997654 4456789999999999999999
Q ss_pred HHHHHHHHHhHHHHHH
Q 012010 381 EDVKYVTQHFRYTFVK 396 (473)
Q Consensus 381 ~~f~~ll~~~P~~l~~ 396 (473)
++|.++++++|+ +..
T Consensus 325 ~~f~~ll~~~p~-~~~ 339 (355)
T 3beh_A 325 ADFQMLCSSSPE-IAE 339 (355)
T ss_dssp ----------------
T ss_pred HHHHHHHHHCHH-HHH
Confidence 999999999998 554
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.84 E-value=2.7e-20 Score=163.62 Aligned_cols=143 Identities=21% Similarity=0.362 Sum_probs=119.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEE
Q 012010 247 ECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQI 326 (473)
Q Consensus 247 ~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~ 326 (473)
.+++++.||++||.++..+++.++++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ecCCceEEEEcCCCCeecchhhhhhccCCcccCC-CCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 012010 327 LHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERL-PPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRS 402 (473)
Q Consensus 327 ~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~-~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~ 402 (473)
.+..+..+++|++||+.+++ .+. .++.++++|.++|+++.|++++|.++++++|+ +....++..
T Consensus 84 ---~~~~~~~~~~G~~fG~~~~~--------~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l 148 (160)
T 4f8a_A 84 ---DDEVVAILGKGDVFGDVFWK--------EATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTA-FSHSFSRNL 148 (160)
T ss_dssp ---TTEEEEEEETTCEEECCTTT--------CSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHHC
T ss_pred ---CCEEEEEecCCCEeCcHHHh--------cCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34568999999999997554 122 57789999999999999999999999999999 665444443
No 6
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.79 E-value=1.2e-18 Score=157.88 Aligned_cols=148 Identities=16% Similarity=0.239 Sum_probs=125.4
Q ss_pred HHHHHhhCCHHH----HHHHHHHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEE
Q 012010 247 ECEMISNLPEGL----RRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQ 322 (473)
Q Consensus 247 ~~~il~~Lp~~L----r~~i~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~ 322 (473)
+.+..+.++|++ +.+...+...++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 444555555544 3344455567899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCceE-EEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHH
Q 012010 323 SSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKR 401 (473)
Q Consensus 323 v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~ 401 (473)
++....+|++. +..+++|++||+.+++ .+.++.++++|.++|+++.|++++|.++++++|+ +....++.
T Consensus 93 v~~~~~~g~~~~~~~~~~G~~fGe~~~l---------~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~l~~~ 162 (187)
T 3gyd_A 93 VIKDIPNKGIQTIAKVGAGAIIGEMSMI---------DGMPRSASCVASLPTDFAVLSRDALYQLLANMPK-LGNKVLIR 162 (187)
T ss_dssp EEEEETTTEEEEEEEEETTCEESHHHHH---------HCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHH-HHHHHHHH
T ss_pred EEEECCCCCeEEEEEccCCCeeeeHHHh---------CCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChH-HHHHHHHH
Confidence 99988888876 7899999999998765 3456788999999999999999999999999999 76655544
Q ss_pred HHH
Q 012010 402 SAR 404 (473)
Q Consensus 402 ~~~ 404 (473)
..+
T Consensus 163 l~~ 165 (187)
T 3gyd_A 163 LLQ 165 (187)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 7
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.76 E-value=2.4e-18 Score=147.75 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=107.7
Q ss_pred HHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCce-E---EEEcCCCCeec
Q 012010 269 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK-S---CCMLGPGNFSG 344 (473)
Q Consensus 269 ~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~-~---i~~l~~G~~fG 344 (473)
+.++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++....+|++ . +..+++|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 5688999999999999999999999999999999999999999999999999999987777754 3 68899999999
Q ss_pred chhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 012010 345 DELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARY 405 (473)
Q Consensus 345 e~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~ 405 (473)
+.+++ .+.++..+++|.++|+++.|++++|.++++++|+ +....++...+.
T Consensus 86 ~~~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-~~~~l~~~l~~~ 136 (142)
T 3mdp_A 86 VSSLI---------KPYHYTSSARATKPVRVVDINGARLREMSENNQA-LGQVLMNNVAAA 136 (142)
T ss_dssp GGGSS---------TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHH
T ss_pred hHHHc---------CCCCceEEEEECCcEEEEEEeHHHHHHHHHHChH-HHHHHHHHHHHH
Confidence 97664 4566788999999999999999999999999999 766555555443
No 8
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.76 E-value=2.5e-18 Score=147.59 Aligned_cols=127 Identities=16% Similarity=0.256 Sum_probs=113.5
Q ss_pred hCCHHHHHHHHHHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCce
Q 012010 253 NLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK 332 (473)
Q Consensus 253 ~Lp~~Lr~~i~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~ 332 (473)
++|+.+|.+...+...++++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|++.. +| .
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g-~ 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EG-V 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TT-E
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CC-E
Confidence 5788888888888889999999999999999999999999999999999999999999999999999999954 45 3
Q ss_pred EEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 333 SCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 333 ~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
.+..+.+|++||+..++ .+.++.++++|.++|+++.|++++|.++++++|.
T Consensus 83 ~~~~~~~G~~fGe~~~l---------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 133 (139)
T 3ocp_A 83 KLCTMGPGKVFGELAIL---------YNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGL 133 (139)
T ss_dssp EEEEECTTCEESCHHHH---------HCCCCSSEEEESSCEEEEEEEHHHHHHHHTC---
T ss_pred EEEEeCCCCEeccHHHH---------CCCCcceEEEECcceEEEEEcHHHHHHHHhhChH
Confidence 57999999999998765 3456788999999999999999999999999998
No 9
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.75 E-value=1.6e-17 Score=143.73 Aligned_cols=118 Identities=20% Similarity=0.352 Sum_probs=108.5
Q ss_pred HHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchh
Q 012010 269 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDEL 347 (473)
Q Consensus 269 ~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~ 347 (473)
++++++|+|..++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+.+|++. +..+++|++||+.+
T Consensus 5 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~ 84 (149)
T 2pqq_A 5 DVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELS 84 (149)
T ss_dssp GGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGG
T ss_pred HHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHH
Confidence 56889999999999999999999999999999999999999999999999999999888888877 79999999999976
Q ss_pred hhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHH
Q 012010 348 LSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVK 396 (473)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~ 396 (473)
++ .+.++..+++|.++|+++.|++++|.++++++|+ +..
T Consensus 85 ~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-~~~ 123 (149)
T 2pqq_A 85 LF---------DPGPRTATGTALTEVKLLALGHGDLQPWLNVRPE-VAT 123 (149)
T ss_dssp GT---------SCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTH-HHH
T ss_pred hc---------CCCCcceEEEEccceEEEEEeHHHHHHHHHhCcH-HHH
Confidence 65 3456788999999999999999999999999998 554
No 10
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.75 E-value=1.5e-17 Score=144.80 Aligned_cols=129 Identities=11% Similarity=0.190 Sum_probs=109.9
Q ss_pred HHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecch
Q 012010 268 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDE 346 (473)
Q Consensus 268 ~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~ 346 (473)
.++++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++....+|++. +..+.+|++||+.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 478999999999999999999999999999999999999999999999999999999877778876 6999999999997
Q ss_pred hhhhhccCCcccCCCC-ceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 012010 347 LLSWCLRRPFIERLPP-SSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYY 406 (473)
Q Consensus 347 ~l~~~~~~~~~~~~~~-~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~~ 406 (473)
.++ .+.+ +..+++|.++|+++.|++++|.++++++|+ +....++......
T Consensus 91 ~~~---------~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-~~~~l~~~~~~rl 141 (154)
T 2z69_A 91 MMF---------MDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTP-LALALLAKLSTRL 141 (154)
T ss_dssp GGG---------SSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHH-HHHHHHHHHHHHH
T ss_pred hhc---------cCCCCCceEEEEccceEEEEECHHHHHHHHHHChH-HHHHHHHHHHHHH
Confidence 664 3344 788999999999999999999999999999 6665555544433
No 11
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.74 E-value=3.6e-17 Score=150.98 Aligned_cols=149 Identities=18% Similarity=0.245 Sum_probs=119.8
Q ss_pred hhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhh
Q 012010 271 VRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLS 349 (473)
Q Consensus 271 l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~ 349 (473)
|+++|+|.+++++.++.+...++.+.|++|++|+++||.++.+|||.+|.|+++..+.+|++. +..+++|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 467899999999999999999999999999999999999999999999999999888888886 6999999999998665
Q ss_pred hhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhh
Q 012010 350 WCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRL 429 (473)
Q Consensus 350 ~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~~s~~~~~~~~~~~q~~~~~~~~r~ 429 (473)
.+.++..+++|.++|+++.|++++|.++++++|+ +....++....... ................|.
T Consensus 81 ---------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~Rl 146 (216)
T 4ev0_A 81 ---------DEGERSASAVAVEDTELLALFREDYLALIRRLPL-VAHNLAALLARRLR----EADLELDLLSFEEARNRV 146 (216)
T ss_dssp ---------HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcH-HHHHHHHHHHHHHH----HHHHHHHHHhcCCHHHHH
Confidence 3456788999999999999999999999999999 77655555555443 233333333344444444
Q ss_pred hhhh
Q 012010 430 TLTS 433 (473)
Q Consensus 430 ~~~~ 433 (473)
....
T Consensus 147 ~~~L 150 (216)
T 4ev0_A 147 AYAL 150 (216)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 12
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.74 E-value=2.3e-17 Score=145.27 Aligned_cols=120 Identities=13% Similarity=0.214 Sum_probs=109.7
Q ss_pred HHHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCC
Q 012010 263 KYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGN 341 (473)
Q Consensus 263 ~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~ 341 (473)
......++++++|+|++++++.+..|+..++.+.|++|++|+++|+.++.+|||.+|.|+++. ..+|++. +..+++|+
T Consensus 32 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G~ 110 (161)
T 3idb_B 32 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRG 110 (161)
T ss_dssp HHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESCC
T ss_pred HHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCCC
Confidence 344456899999999999999999999999999999999999999999999999999999998 6778776 78999999
Q ss_pred eecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 342 FSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 342 ~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
+||+.+++ .+.++.++++|.++|+++.|++++|.++++++|.
T Consensus 111 ~fGe~~~~---------~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~ 152 (161)
T 3idb_B 111 SFGELALM---------YNTPRAATITATSPGALWGLDRVTFRRIIVKNNA 152 (161)
T ss_dssp EECGGGGT---------CCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred EechHHHH---------cCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHH
Confidence 99997665 3566789999999999999999999999999998
No 13
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.73 E-value=1.4e-17 Score=151.32 Aligned_cols=127 Identities=14% Similarity=0.140 Sum_probs=112.5
Q ss_pred HHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecch
Q 012010 268 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDE 346 (473)
Q Consensus 268 ~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~ 346 (473)
..+++++|.|.+++++.++.+...++.+.|++|++|+++||.++.+|||.+|.|+++..+++|++. +..+.+|++||+.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 456778899999999999999999999999999999999999999999999999999988889887 6899999999986
Q ss_pred -hhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012010 347 -LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSAR 404 (473)
Q Consensus 347 -~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~ 404 (473)
+++ ++.++..+++|+++|+++.|++++|.++++++|+ +....++...+
T Consensus 86 ~~~~---------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~~~~ 134 (194)
T 3dn7_A 86 MAFQ---------KQQPADFYIQSVENCELLSITYTEQENLFERIPA-LERYFRLVYQK 134 (194)
T ss_dssp HHHH---------HTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHHh---------cCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHH-HHHHHHHHHHH
Confidence 444 3456788999999999999999999999999999 66655444444
No 14
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.71 E-value=3.9e-17 Score=152.13 Aligned_cols=129 Identities=14% Similarity=0.329 Sum_probs=115.3
Q ss_pred HHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecch
Q 012010 268 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDE 346 (473)
Q Consensus 268 ~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~ 346 (473)
.++++++|+|.+++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++..+++|++. +..+++|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 367899999999999999999999999999999999999999999999999999999888888887 7999999999998
Q ss_pred hhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 012010 347 LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYY 406 (473)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~~ 406 (473)
+++ .+.++..+++|.++|+++.|++++|.++++++|+ +....++......
T Consensus 85 ~~~---------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~~l 134 (227)
T 3d0s_A 85 SIF---------DPGPRTSSATTITEVRAVSMDRDALRSWIADRPE-ISEQLLRVLARRL 134 (227)
T ss_dssp HHH---------SCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHH-HHHHHHHHHHHHH
T ss_pred HHc---------CCCCceeEEEEcccEEEEEEeHHHHHHHHHHChH-HHHHHHHHHHHHH
Confidence 665 3456788999999999999999999999999999 7765555554433
No 15
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.71 E-value=1e-16 Score=148.32 Aligned_cols=128 Identities=15% Similarity=0.125 Sum_probs=112.6
Q ss_pred HHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCe--ecc
Q 012010 269 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNF--SGD 345 (473)
Q Consensus 269 ~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~--fGe 345 (473)
++++++|+|.+++++.++.+...++.+.|++|++|+++||.++.+|||.+|.|+++..+++|++. +..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 57889999999999999999999999999999999999999999999999999999988889887 689999999 688
Q ss_pred hhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 012010 346 ELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYY 406 (473)
Q Consensus 346 ~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~~ 406 (473)
.+++ ++.++..+++|.++|+++.|++++|.+++.++|+ +....++.....+
T Consensus 83 ~~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-~~~~~~~~l~~~l 133 (220)
T 3dv8_A 83 SCIM---------RSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAP-VANYTNELMATRF 133 (220)
T ss_dssp GGGC---------TTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHHH
T ss_pred HHHh---------CCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHHH
Confidence 6554 4556788999999999999999999999999999 7765555554433
No 16
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.70 E-value=4e-17 Score=153.09 Aligned_cols=128 Identities=9% Similarity=0.137 Sum_probs=114.9
Q ss_pred HHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecc
Q 012010 267 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGD 345 (473)
Q Consensus 267 ~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe 345 (473)
..++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+.+|++. +..+++|++||+
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~ 88 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGE 88 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECH
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEech
Confidence 4578999999999999999999999999999999999999999999999999999999988888887 699999999999
Q ss_pred hhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012010 346 ELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSAR 404 (473)
Q Consensus 346 ~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~ 404 (473)
..++ .+.++..+++|.++|+++.|++++|.+++.++|+ +....++....
T Consensus 89 ~~~~---------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~ 137 (237)
T 3fx3_A 89 AVAL---------RNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPE-ICISILATTFG 137 (237)
T ss_dssp HHHH---------HTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHH
T ss_pred HHHh---------cCCCCCceEEECCceEEEEEcHHHHHHHHHHCHH-HHHHHHHHHHH
Confidence 8765 3456788999999999999999999999999999 66655544443
No 17
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.70 E-value=1.2e-16 Score=149.12 Aligned_cols=129 Identities=15% Similarity=0.191 Sum_probs=113.5
Q ss_pred HHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecch
Q 012010 268 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDE 346 (473)
Q Consensus 268 ~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~ 346 (473)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++...++|++. +..+++|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 367899999999999999999999999999999999999999999999999999999988888877 6999999999997
Q ss_pred hhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 012010 347 LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYY 406 (473)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~~ 406 (473)
+++ .+.++..+++|.++|+++.|++++|.++++++|+ +....++......
T Consensus 85 ~~~---------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~~l 134 (231)
T 3e97_A 85 AVL---------AHQERSASVRALTPVRTLMLHREHFELILRRHPR-VLWNLAEMLARRV 134 (231)
T ss_dssp TTT---------CCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHH-HHHHHHHHHHHHH
T ss_pred HHh---------CCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHH-HHHHHHHHHHHHH
Confidence 654 3467789999999999999999999999999999 7665555554443
No 18
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.70 E-value=6.6e-17 Score=150.38 Aligned_cols=129 Identities=11% Similarity=0.190 Sum_probs=114.3
Q ss_pred HHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecch
Q 012010 268 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDE 346 (473)
Q Consensus 268 ~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~ 346 (473)
.++++++|+|.+++++.++.+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++. +..+++|++||+.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 87 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 87 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence 468899999999999999999999999999999999999999999999999999999887888876 6899999999997
Q ss_pred hhhhhccCCcccCCCC-ceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 012010 347 LLSWCLRRPFIERLPP-SSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYY 406 (473)
Q Consensus 347 ~l~~~~~~~~~~~~~~-~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~~ 406 (473)
+++ .+.+ +..+++|.++|+++.|++++|.++++++|+ +....++......
T Consensus 88 ~~~---------~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~~l 138 (227)
T 3dkw_A 88 MMF---------MDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTP-LALALLAKLSTRL 138 (227)
T ss_dssp TTT---------TTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTH-HHHHHHHHHHHHH
T ss_pred Hhc---------CCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHH-HHHHHHHHHHHHH
Confidence 554 3344 788999999999999999999999999999 7765655555543
No 19
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.70 E-value=1.9e-16 Score=135.26 Aligned_cols=123 Identities=28% Similarity=0.394 Sum_probs=106.9
Q ss_pred HHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecch
Q 012010 267 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDE 346 (473)
Q Consensus 267 ~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~ 346 (473)
..++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++... ...+++|++||+.
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~------~~~~~~G~~~G~~ 82 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGEM 82 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS------CEEECTTCEECHH
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC------cceECCCCEeeeh
Confidence 3478999999999999999999999999999999999999999999999999999997532 2478999999998
Q ss_pred hhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 012010 347 LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARY 405 (473)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~ 405 (473)
+++ .+.++..+++|.++|+++.|++++|.++++++|+ +....++...+.
T Consensus 83 ~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-~~~~~~~~~~~r 131 (138)
T 1vp6_A 83 ALI---------SGEPRSATVSAATTVSLLSLHSADFQMLCSSSPE-IAEIFRKTALER 131 (138)
T ss_dssp HHH---------HCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHH
T ss_pred Hhc---------cCCCceeEEEECCCEEEEEECHHHHHHHHHHCHH-HHHHHHHHHHHh
Confidence 665 3446678999999999999999999999999999 666555544443
No 20
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.68 E-value=3.1e-16 Score=146.06 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=104.4
Q ss_pred HHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecch
Q 012010 268 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDE 346 (473)
Q Consensus 268 ~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~ 346 (473)
...+++.++|.+++++.++.+...++.+.|++|++|+++||.++.+|||.+|.|+++..+++|++. +..+++|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 467888999999999999999999999999999999999999999999999999999988889887 6999999999997
Q ss_pred hhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHh-----HHHHHHHHHHHHHHhc
Q 012010 347 LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHF-----RYTFVKEKVKRSARYY 406 (473)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~-----P~~l~~~~~~~~~~~~ 406 (473)
.++ .++.++..+++|.++|+++.|++++|.++++++ |+ +....++.....+
T Consensus 90 ~~~--------~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~-~~~~~~~~l~~~l 145 (230)
T 3iwz_A 90 GLF--------IESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPR-ILYAIGVQLSKRL 145 (230)
T ss_dssp GGT--------SCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHH-HHHHHHHHHHHHH
T ss_pred hhh--------cCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcH-HHHHHHHHHHHHH
Confidence 654 233467889999999999999999999999999 98 6665555554433
No 21
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.68 E-value=3.2e-16 Score=136.89 Aligned_cols=114 Identities=19% Similarity=0.315 Sum_probs=103.8
Q ss_pred HHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 266 LCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 266 ~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
...++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++. +| +.+..+.+|++||+
T Consensus 35 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~-~~~~~~~~G~~fGe 110 (154)
T 3pna_A 35 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN-EWATSVGEGGSFGE 110 (154)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TT-EEEEEECTTCEECC
T ss_pred HHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CC-EEEEEecCCCEeee
Confidence 345789999999999999999999999999999999999999999999999999999986 34 35788999999999
Q ss_pred hhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 346 ELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 346 ~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
.+++ .+.++.++++|.++|+++.|++++|.++++++|.
T Consensus 111 ~~~~---------~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~ 148 (154)
T 3pna_A 111 LALI---------YGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTL 148 (154)
T ss_dssp HHHH---------HCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHH
T ss_pred hHhh---------cCCCcceEEEECcceEEEEEeHHHHHHHHHhChH
Confidence 8776 3456788999999999999999999999999997
No 22
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.67 E-value=4.8e-16 Score=153.47 Aligned_cols=123 Identities=19% Similarity=0.276 Sum_probs=111.9
Q ss_pred HHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchh
Q 012010 268 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 347 (473)
Q Consensus 268 ~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~ 347 (473)
.++++++|+|+.++++.+..|+..++.+.|++|++|+++||.++.+|||.+|.|+++..+.+|++.+..+.+|++||+.+
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~ 91 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIA 91 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHH
Confidence 47889999999999999999999999999999999999999999999999999999998888888889999999999987
Q ss_pred hhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHH
Q 012010 348 LSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKR 401 (473)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~ 401 (473)
++ .+.++.++++|+++|+++.|++++|.+++ ++|+ +....++.
T Consensus 92 l~---------~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~-~~~~~~~~ 134 (333)
T 4ava_A 92 LL---------RDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPG-VGERLLRT 134 (333)
T ss_dssp HH---------HTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTT-HHHHHHHH
T ss_pred hc---------CCCCceEEEEEecCEEEEEEcHHHHHHHH-hChH-HHHHHHHH
Confidence 76 34668899999999999999999999999 9998 66544433
No 23
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.67 E-value=7.5e-16 Score=149.68 Aligned_cols=131 Identities=14% Similarity=0.241 Sum_probs=118.7
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEec
Q 012010 249 EMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILH 328 (473)
Q Consensus 249 ~il~~Lp~~Lr~~i~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~ 328 (473)
....++|+..|.+...+...+.++++++|++++++.+..|+..++.+.|+||++|+++||.++.+|||.+|.|+++.
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--- 95 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--- 95 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred CCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 329 NNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 329 ~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
+| ..+..+.+|++||+.+++ .+.++.++++|.++|+++.|++++|.+++.++|.
T Consensus 96 ~g-~~~~~~~~G~~fGe~~ll---------~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~ 149 (299)
T 3shr_A 96 EG-VKLCTMGPGKVFGELAIL---------YNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGL 149 (299)
T ss_dssp TT-EEEEEECTTCEESCSGGG---------TTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHH
T ss_pred CC-EEEEEeCCCCeeeHhHHh---------cCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHH
Confidence 44 457899999999998765 4567889999999999999999999999999997
No 24
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.67 E-value=2.4e-16 Score=147.18 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=106.0
Q ss_pred cCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhh
Q 012010 273 QVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWC 351 (473)
Q Consensus 273 ~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~ 351 (473)
++|+|..++++.++.+...++.+.|+||++|+++||.++.+|||.+|.|+++..+++|++. +..+++|++||+.+++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~-- 91 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYF-- 91 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHH--
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhh--
Confidence 5689999999999999999999999999999999999999999999999999877778776 7999999999998765
Q ss_pred ccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 012010 352 LRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYY 406 (473)
Q Consensus 352 ~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~~ 406 (473)
.+.++..+++|.++|+++.|++++|.++++++|+ +....++......
T Consensus 92 -------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~~l 138 (232)
T 2gau_A 92 -------AEETCSSTAIAVENSKVLAIPVEAIEALLKGNTS-FCRYFLKALAKEL 138 (232)
T ss_dssp -------HTSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHHH
T ss_pred -------CCCCcceEEEEecceEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHHH
Confidence 3446788999999999999999999999999999 7765555555444
No 25
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.66 E-value=4.7e-16 Score=145.46 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=111.7
Q ss_pred HHHhhcCCcCcCCCHHHHHHHHhh--ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeec
Q 012010 268 LDLVRQVPLFQHMDDLVLENICDR--VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSG 344 (473)
Q Consensus 268 ~~~l~~~~~f~~~s~~~l~~L~~~--l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fG 344 (473)
...++++|+|..++++.++.++.. ++.+.|++|++|+++||.++.+|||.+|.|+++..+.+|++. +..+++|++||
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG 96 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIE 96 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEEC
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeee
Confidence 467889999999999999999998 999999999999999999999999999999999888888876 68999999999
Q ss_pred chhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 012010 345 DELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSA 403 (473)
Q Consensus 345 e~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~ 403 (473)
+..++ .+.+++..+++|.++|+++.|++++|.++++++|+ +....++...
T Consensus 97 ~~~~~--------~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~l~~~l~ 146 (232)
T 1zyb_A 97 PQSLF--------GMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDI-FRLNYMNIVS 146 (232)
T ss_dssp GGGGS--------SSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHH-HHHHHHHHHH
T ss_pred ehHHh--------CCCCCCceEEEEccceEEEEEEHHHHHHHhccCHH-HHHHHHHHHH
Confidence 97654 13333788999999999999999999999999999 6654444433
No 26
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.65 E-value=1.5e-15 Score=139.43 Aligned_cols=122 Identities=15% Similarity=0.139 Sum_probs=103.6
Q ss_pred CcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhcc
Q 012010 275 PLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLR 353 (473)
Q Consensus 275 ~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~ 353 (473)
++++.++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+.+|++. +..+++|++||+..++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~---- 77 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLF---- 77 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTT----
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHh----
Confidence 45677899999999999999999999999999999999999999999999888889887 6899999999997554
Q ss_pred CCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 012010 354 RPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARY 405 (473)
Q Consensus 354 ~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~ 405 (473)
.+.+++..+++|.++|+++.|++++|.++++++|+ +....++.....
T Consensus 78 ----~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~~ 124 (210)
T 3ryp_A 78 ----EEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD-ILMRLSAQMARR 124 (210)
T ss_dssp ----STTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTH-HHHHHHHHHHHH
T ss_pred ----cCCCCceEEEEECCcEEEEEEcHHHHHHHHHHChH-HHHHHHHHHHHH
Confidence 23336788999999999999999999999999999 666555554443
No 27
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.64 E-value=2.9e-16 Score=134.04 Aligned_cols=118 Identities=42% Similarity=0.775 Sum_probs=101.4
Q ss_pred HHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EE--EcCCCCeecc
Q 012010 269 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CC--MLGPGNFSGD 345 (473)
Q Consensus 269 ~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~--~l~~G~~fGe 345 (473)
++++++|+|..++++.++.|+..++.+.|++|++|+++||.++.+|||.+|.|+++ ...+|++. +. .+.+|++||+
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fGe 84 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCGD 84 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSST
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEecH
Confidence 45788999999999999999999999999999999999999999999999999965 55667765 34 9999999999
Q ss_pred hhhhhhccCCcccCCC-----CceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 346 ELLSWCLRRPFIERLP-----PSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 346 ~~l~~~~~~~~~~~~~-----~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
..++..+. +.+ ++.++++|.++|+++.|++++|.++++++|+
T Consensus 85 ~~l~~~~~-----~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~ 131 (137)
T 1wgp_A 85 ELLTWALD-----PKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRR 131 (137)
T ss_dssp HHHHHHHC-----SSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCC
T ss_pred HHHHHHhc-----cccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHh
Confidence 87411111 222 4578999999999999999999999999997
No 28
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.64 E-value=2.6e-15 Score=137.45 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=101.5
Q ss_pred CCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhccCCccc
Q 012010 280 MDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFIE 358 (473)
Q Consensus 280 ~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~~~~~ 358 (473)
+|++.+..++..++.+.|+||++|+++||.++.+|||.+|.|+++..+++|++. +..+++|++||+..++ .
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~--------~ 72 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLF--------E 72 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTC--------C
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHh--------c
Confidence 578999999999999999999999999999999999999999999888888886 7999999999997554 2
Q ss_pred CCC---CceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 012010 359 RLP---PSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARY 405 (473)
Q Consensus 359 ~~~---~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~ 405 (473)
+.. ++..+++|.++|+++.|++++|.++++++|+ +....++.....
T Consensus 73 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~~ 121 (207)
T 2oz6_A 73 KEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSE-ILYTLGSQMADR 121 (207)
T ss_dssp -----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHH
T ss_pred CCCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHH-HHHHHHHHHHHH
Confidence 232 6788999999999999999999999999999 766555554443
No 29
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=136.47 Aligned_cols=124 Identities=16% Similarity=0.215 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEec-CCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEE
Q 012010 256 EGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFT-KGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSC 334 (473)
Q Consensus 256 ~~Lr~~i~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~-~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i 334 (473)
|+.|.+.......++++++++|..++++.+..|+..++.+.|+ +|++|+++|+.++.+|||.+|.|+++. .+|++
T Consensus 3 p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~-- 78 (134)
T 2d93_A 3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV-- 78 (134)
T ss_dssp CSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE--
T ss_pred hhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE--
Confidence 3334433344455788999999999999999999999999999 999999999999999999999999985 56765
Q ss_pred EEcCCCCeecchhhhhhccCCcccCCCCceeEE-EEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 335 CMLGPGNFSGDELLSWCLRRPFIERLPPSSSTL-ITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 335 ~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v-~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
..+.+|++||+.+++ .+.++..++ +|.++|+++.|++++|.++++++++
T Consensus 79 ~~l~~G~~fG~~~~~---------~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 79 ENLFMGNSFGITPTL---------DKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp EEECTTCEESCCSSS---------CCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred EEecCCCccChhHhc---------CCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 668999999997654 344566778 9999999999999999999988764
No 30
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.61 E-value=1.1e-14 Score=140.59 Aligned_cols=124 Identities=17% Similarity=0.314 Sum_probs=108.8
Q ss_pred HHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCc-e-EEEEcCCCCeec
Q 012010 267 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNI-K-SCCMLGPGNFSG 344 (473)
Q Consensus 267 ~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~-~-~i~~l~~G~~fG 344 (473)
...+++++++|..+++..+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++....+|. + .+..+++|++||
T Consensus 155 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fG 234 (291)
T 2qcs_B 155 YEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFG 234 (291)
T ss_dssp HHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEEC
T ss_pred HHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEec
Confidence 45677889999999999999999999999999999999999999999999999999987665553 3 379999999999
Q ss_pred chhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHH
Q 012010 345 DELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVK 400 (473)
Q Consensus 345 e~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~ 400 (473)
+.+++ .+.++.++++|.++|+++.|++++|.+++.++|+ +..+.++
T Consensus 235 e~~ll---------~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~-~~~~~~~ 280 (291)
T 2qcs_B 235 EIALL---------MNRPKAATVVARGPLKCVKLDRPRFERVLGPCSD-ILKRNIQ 280 (291)
T ss_dssp SGGGT---------CCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHH-HHTTSHH
T ss_pred HHHHc---------CCCCcceEEEECCcEEEEEEcHHHHHHHhccHHH-HHHHHHH
Confidence 98765 4566889999999999999999999999999998 5443333
No 31
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.60 E-value=1.9e-15 Score=146.83 Aligned_cols=121 Identities=17% Similarity=0.339 Sum_probs=109.0
Q ss_pred HHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEe-cCCceE-EEEcCCCCee
Q 012010 266 LCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL-HNNIKS-CCMLGPGNFS 343 (473)
Q Consensus 266 ~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~g~~~-i~~l~~G~~f 343 (473)
.+..+++++|+|..++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++... .+|++. +..+++|++|
T Consensus 154 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~f 233 (299)
T 3shr_A 154 EYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWF 233 (299)
T ss_dssp HHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEE
T ss_pred HHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEe
Confidence 35678889999999999999999999999999999999999999999999999999999876 466665 7999999999
Q ss_pred cchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHH
Q 012010 344 GDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVK 396 (473)
Q Consensus 344 Ge~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~ 396 (473)
|+.+++ .+.++.++++|.++|+++.|++++|.+++.++|+ +..
T Consensus 234 Ge~~ll---------~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~-~~~ 276 (299)
T 3shr_A 234 GEKALQ---------GEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDD-VSN 276 (299)
T ss_dssp CGGGGS---------SSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCC-CCH
T ss_pred ChHHHh---------CCCCcceEEEECCCEEEEEEeHHHHHHHHccHHH-HHH
Confidence 998765 4457789999999999999999999999999998 444
No 32
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.60 E-value=7.1e-15 Score=140.00 Aligned_cols=119 Identities=14% Similarity=0.151 Sum_probs=101.8
Q ss_pred cCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhccCCc
Q 012010 278 QHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPF 356 (473)
Q Consensus 278 ~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~~~ 356 (473)
..++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+.+|++. +..+++|++||+..++
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~------- 127 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLF------- 127 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTT-------
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHh-------
Confidence 55899999999999999999999999999999999999999999999888889887 7999999999997554
Q ss_pred ccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 012010 357 IERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARY 405 (473)
Q Consensus 357 ~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~ 405 (473)
.+.+++.++++|.++|+++.|++++|.+++.++|+ +....++.....
T Consensus 128 -~~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~-l~~~l~~~l~~~ 174 (260)
T 3kcc_A 128 -EEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD-ILMRLSAQMARR 174 (260)
T ss_dssp -STTCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTH-HHHHHHHHHHHH
T ss_pred -CCCCCCceEEEECCCeEEEEEcHHHHHHHHHHCHH-HHHHHHHHHHHH
Confidence 23336789999999999999999999999999999 766555554443
No 33
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.59 E-value=3.4e-15 Score=138.22 Aligned_cols=120 Identities=10% Similarity=0.166 Sum_probs=107.1
Q ss_pred HHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchh
Q 012010 269 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDEL 347 (473)
Q Consensus 269 ~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~ 347 (473)
.+++++|+|..++++.+..+...++.+.|++|++|+++||.++.+|||.+|.|+++ ...+|++. +..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~-- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT-- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES--
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC--
Confidence 45788999999999999999999999999999999999999999999999999995 66788876 699999999998
Q ss_pred hhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 012010 348 LSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYY 406 (473)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~~ 406 (473)
++..+++|.++|+++.|++++|.++++++|+ +....++.....+
T Consensus 81 --------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~~~~~~ 124 (220)
T 2fmy_A 81 --------------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPA-FSLNMVKVLGDLL 124 (220)
T ss_dssp --------------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTH-HHHHHHHHHHHHH
T ss_pred --------------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHH-HHHHHHHHHHHHH
Confidence 2467899999999999999999999999999 7766665555544
No 34
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.58 E-value=3e-15 Score=138.85 Aligned_cols=142 Identities=14% Similarity=0.087 Sum_probs=114.6
Q ss_pred HhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhh
Q 012010 270 LVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELL 348 (473)
Q Consensus 270 ~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l 348 (473)
+++++|+|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++ ...+|++. +..+++|++||.
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG~--- 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFCM--- 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEES---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEecC---
Confidence 3678899999999999999999999999999999999999999999999999997 67788877 699999999992
Q ss_pred hhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhh
Q 012010 349 SWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 428 (473)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~~s~~~~~~~~~~~q~~~~~~~~r 428 (473)
++.++++|.++|+++.|++++|.++++++|+ +....++.....+. ................|
T Consensus 77 -------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~~l~----~~~~~~~~l~~~~~~~R 138 (222)
T 1ft9_A 77 -------------HSGCLVEATERTEVRFADIRTFEQKLQTCPS-MAWGLIAILGRALT----SCMRTIEDLMFHDIKQR 138 (222)
T ss_dssp -------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGG-GHHHHHHHHHHHHH----HHHHHHHHHHTHHHHHH
T ss_pred -------------CCCEEEEEccceEEEEEeHHHHHHHHHHChH-HHHHHHHHHHHHHH----HHHHHHHHHhcCCHHHH
Confidence 3567999999999999999999999999999 77656555555433 23333333344444444
Q ss_pred hhhhh
Q 012010 429 LTLTS 433 (473)
Q Consensus 429 ~~~~~ 433 (473)
.....
T Consensus 139 l~~~L 143 (222)
T 1ft9_A 139 IAGFF 143 (222)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 35
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.58 E-value=8.1e-15 Score=137.69 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=103.6
Q ss_pred HHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecch
Q 012010 267 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDE 346 (473)
Q Consensus 267 ~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~ 346 (473)
...+++++|+|+.++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++.. +...+..+++|++||+.
T Consensus 123 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~---~~~~~~~l~~g~~fGe~ 199 (246)
T 3of1_A 123 YDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKK---GQGVINKLKDHDYFGEV 199 (246)
T ss_dssp SHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEET---TTEEEEEEETTCEECHH
T ss_pred HHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEc---CCceEEEcCCCCcccHH
Confidence 456778899999999999999999999999999999999999999999999999999863 22267999999999998
Q ss_pred hhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 347 LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
+++ .+.+|.++++|.++|+++.|++++|.+++..+|+
T Consensus 200 ~~~---------~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~ 236 (246)
T 3of1_A 200 ALL---------NDLPRQATVTATKRTKVATLGKSGFQRLLGPAVD 236 (246)
T ss_dssp HHH---------HTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHH
T ss_pred HHh---------CCCCcccEEEECCCEEEEEEeHHHHHHHhccHHH
Confidence 776 3467889999999999999999999999999998
No 36
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.58 E-value=4.1e-15 Score=137.18 Aligned_cols=122 Identities=16% Similarity=0.261 Sum_probs=99.6
Q ss_pred CCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhc
Q 012010 274 VPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCL 352 (473)
Q Consensus 274 ~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~ 352 (473)
-|.|...+++....+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+.+|++. +..+++|++||+..++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~--- 80 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIF--- 80 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTT---
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHh---
Confidence 377888889999999999999999999999999999999999999999999888888887 6999999999997554
Q ss_pred cCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012010 353 RRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSAR 404 (473)
Q Consensus 353 ~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~ 404 (473)
.+..++..+++|.++|+++.|++++|.++++++|+ +....++....
T Consensus 81 -----~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~l~~~l~~ 126 (213)
T 1o5l_A 81 -----SSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRE-LLLFFLKDVSE 126 (213)
T ss_dssp -----SSSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHH
T ss_pred -----cCCCCceEEEEEccceEEEEEeHHHHHHHHHHCHH-HHHHHHHHHHH
Confidence 23346788999999999999999999999999999 66555554443
No 37
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.57 E-value=3.3e-14 Score=137.29 Aligned_cols=126 Identities=17% Similarity=0.267 Sum_probs=110.5
Q ss_pred HHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 265 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 265 ~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+...+.++++|+|+.++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +| ..+..+.+|++||
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g-~~~~~l~~G~~fG 110 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN-EWATSVGEGGSFG 110 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TT-EEEEEECTTCEEC
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CC-eEEEEcCCCCccc
Confidence 3456889999999999999999999999999999999999999999999999999999986 45 4589999999999
Q ss_pred chhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012010 345 DELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSAR 404 (473)
Q Consensus 345 e~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~ 404 (473)
+.+++ .+.++.++++|.++|+++.|++++|.+++.++|. +....+....+
T Consensus 111 e~~l~---------~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~l~ 160 (291)
T 2qcs_B 111 ELALI---------YGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTL-RKRKMYEEFLS 160 (291)
T ss_dssp GGGGT---------CCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred hHHHh---------cCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHH-HHHHHHHHHHh
Confidence 98765 4567889999999999999999999999999998 65544444433
No 38
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.57 E-value=1.9e-14 Score=146.49 Aligned_cols=119 Identities=13% Similarity=0.212 Sum_probs=108.7
Q ss_pred HHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCe
Q 012010 264 YHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNF 342 (473)
Q Consensus 264 ~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~ 342 (473)
.+...+.++++++|++++++.+..|+..++.+.|++|++|+++||.++.+|||.+|.|+++. ..+|++. +..+.+|++
T Consensus 140 ~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~~ 218 (416)
T 3tnp_B 140 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGS 218 (416)
T ss_dssp HHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCCE
T ss_pred HHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCCCE
Confidence 44456889999999999999999999999999999999999999999999999999999987 5667665 789999999
Q ss_pred ecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 343 SGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 343 fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
||+.+++ .+.+|.++++|.++|+++.|++++|.+++.++|.
T Consensus 219 fGe~all---------~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~ 259 (416)
T 3tnp_B 219 FGELALM---------YNTPKAATITATSPGALWGLDRVTFRRIIVKNNA 259 (416)
T ss_dssp ECGGGGT---------SCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred EeeHHHh---------cCCCcccEEEEccCeEEEEEeehhhhhhhhcchh
Confidence 9998776 3567889999999999999999999999999997
No 39
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1e-14 Score=136.94 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=104.3
Q ss_pred HHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecch
Q 012010 267 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDE 346 (473)
Q Consensus 267 ~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~ 346 (473)
..+.++++|+|++++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++. +|+. +..+.+|++||+.
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~~-~~~~~~g~~fGe~ 80 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDNK-VNSSGPGSSFGEL 80 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTSC-CEEECTTCEECHH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCEE-EEecCCCCeeehh
Confidence 35788999999999999999999999999999999999999999999999999999975 3443 6899999999998
Q ss_pred hhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHH
Q 012010 347 LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVK 396 (473)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~ 396 (473)
+++ .+.++.++++|.++|+++.|++++|.+++.++|. .+.
T Consensus 81 ~l~---------~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~-~~~ 120 (246)
T 3of1_A 81 ALM---------YNSPRAATVVATSDCLLWALDRLTFRKILLGSSF-KKR 120 (246)
T ss_dssp HHH---------HTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTS-HHH
T ss_pred HHh---------cCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHH-HHH
Confidence 776 3456789999999999999999999999999997 443
No 40
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.55 E-value=8.9e-15 Score=147.24 Aligned_cols=122 Identities=17% Similarity=0.297 Sum_probs=109.2
Q ss_pred HHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCc-e-EEEEcCCCCe
Q 012010 265 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNI-K-SCCMLGPGNF 342 (473)
Q Consensus 265 ~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~-~-~i~~l~~G~~ 342 (473)
..+..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++....+|+ + .+..+++|++
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence 4456788999999999999999999999999999999999999999999999999999987655554 3 3799999999
Q ss_pred ecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHH
Q 012010 343 SGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVK 396 (473)
Q Consensus 343 fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~ 396 (473)
||+.+++ .+.+|.++++|.++|+++.|++++|.+++..+|+ +..
T Consensus 324 fGe~all---------~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~-i~~ 367 (381)
T 4din_B 324 FGEIALL---------LNRPRAATVVARGPLKCVKLDRPRFERVLGPCSE-ILK 367 (381)
T ss_dssp ECTTGGG---------SCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHH-HHH
T ss_pred echHHHh---------CCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHH-HHH
Confidence 9998776 4567889999999999999999999999999998 443
No 41
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.54 E-value=3.1e-14 Score=147.15 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=117.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCc--
Q 012010 254 LPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNI-- 331 (473)
Q Consensus 254 Lp~~Lr~~i~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~-- 331 (473)
.|+..|.+...+...+.++++++|.+++++.+..|+..++.+.|++|++|+++||.++.+|||.+|.|+++....+|+
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 466777777777778999999999999999999999999999999999999999999999999999999998877875
Q ss_pred -eEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 332 -KSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 332 -~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
..+..+++|++||+.+ + .+.++.++++|.++|+++.|++++|.+++.++|+
T Consensus 107 ~~~~~~~~~G~~fGe~~-l---------~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~ 158 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-L---------DNTPRHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (469)
T ss_dssp CEEEEEECTTCEECGGG-G---------GTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGG
T ss_pred ceEEEEccCCCCcchhh-h---------CCCCccceEEEccceeEEEEcHHHHHHHHHhCHH
Confidence 3479999999999976 4 3456789999999999999999999999999997
No 42
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.54 E-value=1.4e-14 Score=136.98 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=105.6
Q ss_pred hhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhh
Q 012010 271 VRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLS 349 (473)
Q Consensus 271 l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~ 349 (473)
+.++..+..++++.++.+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+.+|++. +..+++|++||+ ++
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l 88 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LY 88 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CS
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ec
Confidence 334444488999999999999999999999999999999999999999999999988899887 699999999999 32
Q ss_pred hhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 012010 350 WCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARY 405 (473)
Q Consensus 350 ~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~ 405 (473)
.+. +..+++|.++|+++.|++++|.+++.++|+ +....++.....
T Consensus 89 ---------~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~l~~~l~~~ 133 (250)
T 3e6c_C 89 ---------PTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDED-MIFEIFKNYLTK 133 (250)
T ss_dssp ---------CCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTH-HHHHHHHHHHHH
T ss_pred ---------CCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHH-HHHHHHHHHHHH
Confidence 234 788999999999999999999999999999 666555544443
No 43
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.53 E-value=4.2e-14 Score=142.30 Aligned_cols=125 Identities=15% Similarity=0.214 Sum_probs=109.5
Q ss_pred HHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 265 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 265 ~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+...+.++++++|++++++.+..|+..++.+.|++|++|+++||.++.+|||.+|.|+++. +| +.+..+++|++||
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~-~~v~~l~~G~~fG 201 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NG-EWVTNISEGGSFG 201 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TT-EEEEEEESSCCBC
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CC-eEeeeCCCCCEEE
Confidence 3456889999999999999999999999999999999999999999999999999999985 34 4578899999999
Q ss_pred chhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 012010 345 DELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSA 403 (473)
Q Consensus 345 e~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~ 403 (473)
+.+++ .+.++.++++|.++|+++.|++++|.+++.++|. +....+....
T Consensus 202 e~all---------~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~-~~~~~~~~~L 250 (381)
T 4din_B 202 ELALI---------YGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTL-RKRKMYEEFL 250 (381)
T ss_dssp GGGGT---------SCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred chHHh---------cCCCcceEEEECCCEEEEEEchHHHHHhhhhhhH-HHHHHHHHHh
Confidence 98776 3567889999999999999999999999999998 5544444333
No 44
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.53 E-value=2.4e-14 Score=145.65 Aligned_cols=116 Identities=13% Similarity=0.239 Sum_probs=102.2
Q ss_pred HHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecC------CceE-EEEcCCC
Q 012010 268 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHN------NIKS-CCMLGPG 340 (473)
Q Consensus 268 ~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~------g~~~-i~~l~~G 340 (473)
..+++++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++....+ |++. +..+++|
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G 345 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRG 345 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTT
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCC
Confidence 35678889999999999999999999999999999999999999999999999999876554 5554 7999999
Q ss_pred CeecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 341 NFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 341 ~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
++||+.+++ .+.+|.++++|.++|+++.|++++|.+++..+|+
T Consensus 346 ~~fGE~all---------~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~ 388 (416)
T 3tnp_B 346 QYFGELALV---------TNKPRAASAHAIGTVKCLAMDVQAFERLLGPCME 388 (416)
T ss_dssp CEESGGGGT---------CCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHH
T ss_pred CEecHHHHh---------CCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHH
Confidence 999998775 4567899999999999999999999999999998
No 45
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.50 E-value=2.5e-13 Score=127.28 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=96.9
Q ss_pred cCCCHHHHHHHHh--hceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhccC
Q 012010 278 QHMDDLVLENICD--RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRR 354 (473)
Q Consensus 278 ~~~s~~~l~~L~~--~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~ 354 (473)
++++++.+..+.. .++.+.|++|++|+++||.++.+|||.+|.|+++..+.+|++. +..+ +|++||+..++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~----- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFI----- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCT-----
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhh-----
Confidence 4678899998885 5999999999999999999999999999999999988889887 5777 99999997554
Q ss_pred CcccCCCC-ceeEEEEe-eeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 012010 355 PFIERLPP-SSSTLITL-ETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYY 406 (473)
Q Consensus 355 ~~~~~~~~-~~~~v~A~-~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~~~ 406 (473)
.+.++ +..++.|. ++|+++.|++++|.+++.++|+ +....++......
T Consensus 76 ---~~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~~l 125 (238)
T 2bgc_A 76 ---DTETSVGYYNLEVISEQATAYVIKINELKELLSKNLT-HFFYVFQTLQKQV 125 (238)
T ss_dssp ---TTCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHHH
T ss_pred ---cCCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHH-HHHHHHHHHHHHH
Confidence 12221 25677787 5999999999999999999999 7665555554433
No 46
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.48 E-value=2.1e-13 Score=128.30 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=97.7
Q ss_pred HHHHHHHHhhce---EEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhccCCcc
Q 012010 282 DLVLENICDRVK---SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFI 357 (473)
Q Consensus 282 ~~~l~~L~~~l~---~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~~~~ 357 (473)
+++++.|..... .+.|++|++|+++|+.++.+|||.+|.|+++..+.+|++. +..+++|++||+.+++.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~------- 102 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLT------- 102 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHS-------
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhC-------
Confidence 677788888888 9999999999999999999999999999999988899887 69999999999986651
Q ss_pred cCCC-CceeEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012010 358 ERLP-PSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSAR 404 (473)
Q Consensus 358 ~~~~-~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~~ 404 (473)
+.+ ++..+++|+++|+++.|++++|.++++++|+ +....++....
T Consensus 103 -~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~l~~~l~~ 148 (243)
T 3la7_A 103 -GNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPE-LSMLMLRGLSS 148 (243)
T ss_dssp -SCCSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHH-HHHHHHHHHHH
T ss_pred -CCCCcceEEEEEccceEEEEEcHHHHHHHHHHCHH-HHHHHHHHHHH
Confidence 222 2458999999999999999999999999999 66655544443
No 47
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.47 E-value=2.7e-13 Score=140.10 Aligned_cols=116 Identities=14% Similarity=0.238 Sum_probs=104.1
Q ss_pred HHHHHHhhcCCcCcCCCHHHHHHHHhhceE-EEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 265 HLCLDLVRQVPLFQHMDDLVLENICDRVKS-LIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 265 ~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~-~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
+...+.++++|+|.+++++.+..++..++. +.|++|++|+++||.++.+|||.+|.|+++. +++..+..+.+|++|
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~~~~~~~~l~~G~~f 409 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGKGVVCTLHEGDDF 409 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE---TTTEEEEEEETTCEE
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE---cCCeeEEEecCCCEE
Confidence 334578999999999999999999999985 4899999999999999999999999999986 344568999999999
Q ss_pred cchhhhhhccCCcccCCCCceeEEEEee-eeeeeeeCHHHHHHHHHHhHH
Q 012010 344 GDELLSWCLRRPFIERLPPSSSTLITLE-TTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 344 Ge~~l~~~~~~~~~~~~~~~~~~v~A~~-~~~ll~l~~~~f~~ll~~~P~ 392 (473)
|+.+++ .+.++.++++|.+ +|+++.|++++|.+++.++|+
T Consensus 410 Ge~~ll---------~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~ 450 (469)
T 1o7f_A 410 GKLALV---------NDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA 450 (469)
T ss_dssp CGGGGT---------CCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTC
T ss_pred EEehhh---------cCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChH
Confidence 998765 4567899999998 699999999999999999998
No 48
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.45 E-value=1.2e-13 Score=117.72 Aligned_cols=90 Identities=14% Similarity=0.299 Sum_probs=53.5
Q ss_pred HHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhcCC
Q 012010 146 ILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQL 223 (473)
Q Consensus 146 Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i 223 (473)
|..|+||+++|+|| |||++|.|. .++++++++|++|.+++|++++.+++.+.+......+.++..+..+...+..++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~-~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTP-IGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 89999999999999 999999996 999999999999999999999999999977665554443333333334445566
Q ss_pred CHHHHHHHHHHHH
Q 012010 224 PQGFRQRVRNYER 236 (473)
Q Consensus 224 ~~~L~~rv~~y~~ 236 (473)
+++.+..++++++
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 6666666666654
No 49
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.45 E-value=7.9e-13 Score=114.49 Aligned_cols=84 Identities=25% Similarity=0.346 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHhh----cchHHHHHHHHHHH
Q 012010 146 ILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKV------FLHA----TTSKKQAMQLKMRN 213 (473)
Q Consensus 146 Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~------i~~~----~~~~~~~~~~~~~~ 213 (473)
|..|+||+++|+|| |||++|.|. .+++++++.+++|.+++++.++.++. +... .+....+..++++.
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~-~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~ 131 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTD-FGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEA 131 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999 999999986 99999999999999999999999987 3322 24445566778999
Q ss_pred HHHHHHhcCCCHHHHHH
Q 012010 214 IEWWMRKRQLPQGFRQR 230 (473)
Q Consensus 214 i~~~m~~~~i~~~L~~r 230 (473)
+++++++++.|++|+.|
T Consensus 132 i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 132 IEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHTTC------
T ss_pred HHHHHHhcCCCcCCCCC
Confidence 99999999999999875
No 50
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.42 E-value=5.7e-13 Score=150.16 Aligned_cols=132 Identities=22% Similarity=0.311 Sum_probs=110.6
Q ss_pred HHhhCCHHHHHHHHHHHHHHHhhcCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecC
Q 012010 250 MISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHN 329 (473)
Q Consensus 250 il~~Lp~~Lr~~i~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~ 329 (473)
.|+.-| .-|.+--.++..+.|+++++|+++++..+.+|+..+..+.|++|++|+++||.++++|+|.+|.|.|+....+
T Consensus 24 ~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 24 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 444433 3343333344457899999999999999999999999999999999999999999999999999999865433
Q ss_pred C---ceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHHHHHHHHHHhHH
Q 012010 330 N---IKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 330 g---~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~~f~~ll~~~P~ 392 (473)
+ ...+..+.+|+.||| +++ .+.+|+++++|.++|+++.|++++|..++++||+
T Consensus 103 ~~~~~~~v~~l~~G~sFGE-all---------~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e 158 (999)
T 4f7z_A 103 SHQDAVTICTLGIGTAFGE-SIL---------DNTPRHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (999)
T ss_dssp CTTSCEEEEEEETTCEECG-GGG---------GTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred CCCCceeEEEecCCcchhh-hhc---------cCCCcceEEEeccceEEEEEEHHHHHHHHHhChH
Confidence 2 234789999999999 554 3457899999999999999999999999999998
No 51
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.38 E-value=1e-12 Score=141.49 Aligned_cols=131 Identities=14% Similarity=0.232 Sum_probs=111.2
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHhhcCCcCcCCCHHHHHHHHhhce-EEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEe
Q 012010 249 EMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVK-SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL 327 (473)
Q Consensus 249 ~il~~Lp~~Lr~~i~~~~~~~~l~~~~~f~~~s~~~l~~L~~~l~-~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~ 327 (473)
.++... +..|.+...+...+.++++++|.+++++.+..++..+. .+.|++|++|+++||.++.+|||.+|.|+++..
T Consensus 13 ~iL~k~-p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~- 90 (694)
T 3cf6_E 13 MILRKP-PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY- 90 (694)
T ss_dssp HHHHSC-GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET-
T ss_pred HHHcCC-hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe-
Confidence 455443 34444444444568899999999999999999999998 789999999999999999999999999999863
Q ss_pred cCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEee-eeeeeeeCHHHHHHHHHHhHH
Q 012010 328 HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLE-TTEAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 328 ~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~-~~~ll~l~~~~f~~ll~~~P~ 392 (473)
|+..+..+.+|++||+.+++ .+.++.++++|.+ +|+++.|++++|.++++++|+
T Consensus 91 --g~~il~~l~~Gd~fGe~al~---------~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~ 145 (694)
T 3cf6_E 91 --GKGVVCTLHEGDDFGKLALV---------NDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA 145 (694)
T ss_dssp --TTEEEEEEETTCEECHHHHH---------HTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCC
T ss_pred --CCEEEEEeCCCCEeehHHHh---------CCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHH
Confidence 44568999999999998765 3456789999999 599999999999999999997
No 52
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.38 E-value=1.3e-12 Score=113.43 Aligned_cols=61 Identities=13% Similarity=0.346 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 012010 144 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQ 205 (473)
Q Consensus 144 ~~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~ 205 (473)
..|..|+||+++|+|| |||++|.|. .+++++++.+++|.+++|+.+|.+++.+.+...++.
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~-~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~ 145 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTL-WGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERR 145 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC---
T ss_pred CcccceeheeeeeeecccCCCCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999 999999986 999999999999999999999999999988776543
No 53
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.36 E-value=1.5e-12 Score=108.80 Aligned_cols=58 Identities=14% Similarity=0.328 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 012010 144 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 202 (473)
Q Consensus 144 ~~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~ 202 (473)
..|..|+||+++|+|| |||++|.|. .+++++++.+++|..++++.+|.+++.+.+..+
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~-~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTL-WGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999 999999986 999999999999999999999999999876443
No 54
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.36 E-value=1.5e-12 Score=120.90 Aligned_cols=55 Identities=24% Similarity=0.590 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012010 144 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHA 199 (473)
Q Consensus 144 ~~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~ 199 (473)
..|..|+||+++|||| |||++|.|. .|++++++.|++|.+++|+.+|.+++.+++
T Consensus 164 ~~~~~s~y~~~~t~tTvGyGdi~P~t~-~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 164 KSVFDALWWAVVTATTVGYGDVVPATP-IGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp CSHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHhHHhHHhccCCCCCCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999 999999986 999999999999999999999999998864
No 55
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.32 E-value=8.8e-12 Score=140.49 Aligned_cols=115 Identities=14% Similarity=0.234 Sum_probs=101.9
Q ss_pred HHHHHHhhcCCcCcCCCHHHHHHHHhhceEEE-ecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 265 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLI-FTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 265 ~~~~~~l~~~~~f~~~s~~~l~~L~~~l~~~~-~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
+...+.+.++|.|++++....+.|+..+.... +++|++|++|||.++++|||.+|.|+|+. +++..+..+++||+|
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~~~~~v~~L~~Gd~F 409 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGKGVVCTLHEGDDF 409 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---TTTEEEEEEETTCEE
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---cCCcceEEecCCCcc
Confidence 34557899999999999999999999999765 57799999999999999999999999975 455668999999999
Q ss_pred cchhhhhhccCCcccCCCCceeEEEEeee-eeeeeeCHHHHHHHHHHhH
Q 012010 344 GDELLSWCLRRPFIERLPPSSSTLITLET-TEAFGLEAEDVKYVTQHFR 391 (473)
Q Consensus 344 Ge~~l~~~~~~~~~~~~~~~~~~v~A~~~-~~ll~l~~~~f~~ll~~~P 391 (473)
||.+++ ++.||.++++|.++ |++++|++++|.+++.+-.
T Consensus 410 GElALL---------~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~e 449 (999)
T 4f7z_A 410 GKLALV---------NDAPRAASIVLREDNCHFLRVDKEDGNRILRDVE 449 (999)
T ss_dssp CGGGGT---------CSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHHH
T ss_pred cchhhc---------cCCCeeEEEEEecCceEEEEeeHHHHHHHHhHHH
Confidence 999887 56789999999985 9999999999999998754
No 56
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.31 E-value=4.2e-12 Score=115.07 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=79.2
Q ss_pred EEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeee
Q 012010 295 LIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETT 373 (473)
Q Consensus 295 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~ 373 (473)
+.|++|++|+++|+.++.+|||.+|.|+++..+.+|++. +..+++|++||+ +++ .+.++.++++|.++|
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~---------~~~~~~~~~~A~~~~ 71 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EAL---------EGKAYRYTAEAMTEA 71 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGG---------TCSBCSSEEEESSSE
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhh---------CCCCceeEEEECCcE
Confidence 579999999999999999999999999999888888876 799999999999 876 345678899999999
Q ss_pred eeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 012010 374 EAFGLEAEDVKYVTQHFRYTFVKEKVKRSA 403 (473)
Q Consensus 374 ~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~ 403 (473)
+++.|++++|. |+ +....++...
T Consensus 72 ~v~~i~~~~~~------p~-~~~~~~~~l~ 94 (195)
T 3b02_A 72 VVQGLEPRAMD------HE-ALHRVARNLA 94 (195)
T ss_dssp EEEEECGGGCC------HH-HHHHHHHHHH
T ss_pred EEEEEcHHHcC------HH-HHHHHHHHHH
Confidence 99999999998 66 5544444433
No 57
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.22 E-value=2.6e-11 Score=103.77 Aligned_cols=57 Identities=14% Similarity=0.369 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 012010 145 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 202 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~ 202 (473)
.|..|+||+++|+|| |||++|.|. .+++++++.+++|.++++++++.+++.+.+...
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~-~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTL-WGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSS-HHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999 999999986 999999999999999999999999988855443
No 58
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.22 E-value=1.5e-11 Score=112.04 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=79.1
Q ss_pred HHhhceEEEecCCCEEEcCCCcc--CeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecchhhhhhccCCcccCCCCce
Q 012010 288 ICDRVKSLIFTKGEVITKEGDPV--QRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFIERLPPSS 364 (473)
Q Consensus 288 L~~~l~~~~~~~ge~I~~~Gd~~--~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~ 364 (473)
+...++.+.|++|++|+++||.+ +.+|||.+|.|+++..+++|++. +..+++|++||+ .++ .+.++.
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l---------~~~~~~ 70 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EAL---------FGQERI 70 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHH---------HTCCBC
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhc---------CCCCcc
Confidence 34567889999999999999999 99999999999999888888887 699999999999 654 235678
Q ss_pred eEEEEeeeeeeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 012010 365 STLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSA 403 (473)
Q Consensus 365 ~~v~A~~~~~ll~l~~~~f~~ll~~~P~~l~~~~~~~~~ 403 (473)
.+++|+++|+++.| +++|. |+ +....++...
T Consensus 71 ~~~~A~~~~~v~~i-~~~~~------p~-~~~~~~~~l~ 101 (202)
T 2zcw_A 71 YFAEAATDVRLEPL-PENPD------PE-LLKDLAQHLS 101 (202)
T ss_dssp SEEEESSCEEEEEC-CSSCC------HH-HHHHHHHHHH
T ss_pred eEEEEcccEEEEEE-hHhcC------HH-HHHHHHHHHH
Confidence 89999999999999 99886 66 5544444433
No 59
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.11 E-value=1.2e-10 Score=120.95 Aligned_cols=58 Identities=16% Similarity=0.301 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 012010 144 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 202 (473)
Q Consensus 144 ~~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~ 202 (473)
..|..|+||++.|||| |||+.|.+. .++++++++|++|.+++++.+|.+.+.++....
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~-~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTI-GGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cchhhhhheeeeEEEecccCCCCCCCc-chHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999 999999986 999999999999999999999999987766554
No 60
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.08 E-value=6.8e-10 Score=91.26 Aligned_cols=60 Identities=22% Similarity=0.391 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 012010 145 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQ 205 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~ 205 (473)
.|..|+||+++|+|| |||++|.|. .+++++++.+++|..++++.++.+++.++..+...+
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~-~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~ 110 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTD-FGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999 999999986 999999999999999999999999999865554433
No 61
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.01 E-value=1e-10 Score=94.48 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 012010 145 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 202 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~ 202 (473)
.|..|+||+++|+|| |||++|.+. .+++++++.+++|..+++++++.+++.+.+...
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~-~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTE-EGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSS-SCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999 999999986 999999999999999999999999988866543
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.91 E-value=4.4e-09 Score=83.70 Aligned_cols=53 Identities=23% Similarity=0.471 Sum_probs=50.0
Q ss_pred HHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012010 146 ILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHA 199 (473)
Q Consensus 146 Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~ 199 (473)
|..|+||+++|+|| |||++|.|. .+++++++.+++|..+++++++.++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~-~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTD-FGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88999999999999 999999986 999999999999999999999999988753
No 63
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.88 E-value=8.6e-09 Score=79.33 Aligned_cols=51 Identities=20% Similarity=0.499 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012010 146 ILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFL 197 (473)
Q Consensus 146 Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~ 197 (473)
|..|+||+++|+|| |||++|.|. .+++++++.+++|..++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~-~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTP-LGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999 999999986 9999999999999999999999999875
No 64
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.75 E-value=5.2e-10 Score=98.53 Aligned_cols=61 Identities=15% Similarity=0.362 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 012010 144 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQ 205 (473)
Q Consensus 144 ~~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~~ 205 (473)
..|..|+||+++|+|| |||++|.|. .+++++++.+++|.++++++++.+++.+.+...+..
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~-~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~ 128 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTL-WGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQ 128 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSS-TTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999 999999996 999999999999999999999999999876655443
No 65
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.56 E-value=9.2e-08 Score=92.00 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012010 145 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHA 199 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~ 199 (473)
.|..|+||+++|+|| |||++|.+. ..++++++.+++|.+++|+.+|.+.+.+..
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~-~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGP-LANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999 999999985 899999999999999999999998887754
No 66
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.54 E-value=8.8e-08 Score=93.18 Aligned_cols=56 Identities=14% Similarity=0.258 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012010 145 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATT 201 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~ 201 (473)
.|..|+||+++|+|| |||++|.+. .+++++++.+++|.+++|+++|.+.+.+....
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~-~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTV-YAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999 999999986 99999999999999999999999998887654
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.48 E-value=3.7e-07 Score=87.49 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012010 145 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHA 199 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~ 199 (473)
.|..|+||+++|+|| |||++|.|. ..++++++.+++|..+++++++.+++.+.+
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~-~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTD-AGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999 999999996 999999999999999999999999988854
No 68
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.36 E-value=9.3e-07 Score=85.67 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012010 145 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATT 201 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~ 201 (473)
.|..|+||+++|+|| |||+.|.+. ..++++++.+++|.+++|+++|.+.+.+....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~-~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTV-YAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999 999999986 99999999999999999999999998886644
No 69
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.19 E-value=4.5e-06 Score=88.00 Aligned_cols=51 Identities=20% Similarity=0.544 Sum_probs=46.2
Q ss_pred HHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 012010 146 ILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGN-IKVFL 197 (473)
Q Consensus 146 Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~-i~~i~ 197 (473)
|..|+||+++|+|| |||++|.|. .+++++++++++|.+++++.++. +...+
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESD-AGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999 999999986 99999999999999999999988 44443
No 70
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.13 E-value=1.4e-06 Score=83.47 Aligned_cols=59 Identities=19% Similarity=0.319 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhhccc--cCCcccccchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 012010 145 KILFPIFWGLMTLST--FGNLESTTEWLEV------VFNIIVLTSGLLLVTMLIGNIKVFLHATTSKK 204 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~t~~~E~------~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~~ 204 (473)
.|+.|+||+++|+|| |||++|.++ ..+ +++++++++|..+++++++.+++.+.....+.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~-~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGAD-PRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCC-TTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred CHHHHHHHHHhheeccccCCCCCCCc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999 999999987 665 69999999999999999999999987766433
No 71
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.10 E-value=1.1e-05 Score=76.15 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhccc--cCCcccccchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012010 146 ILFPIFWGLMTLST--FGNLESTTEWL------EVVFNIIVLTSGLLLVTMLIGNIKVFLH 198 (473)
Q Consensus 146 Yl~slYwai~t~tt--yGdi~p~t~~~------E~~~~i~~ml~g~~~~a~iig~i~~i~~ 198 (473)
|+.|+||++.|+|| |||++|.++.. -++++++.+++|..+++++++.+++++.
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~ 262 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHE 262 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999 99999988621 3899999999999999999999988764
No 72
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.10 E-value=4.8e-06 Score=80.78 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhhccc--cCCccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012010 145 KILFPIFWGLMTLST--FGNLESTT-EWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATT 201 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~t-~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~ 201 (473)
.+..++|||+.|+|| |||+.|.+ ...-++++++.+++|.++.|+.+|.+..-++.-.
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 150 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK 150 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 367899999999999 99999962 2377899999999999999999998877665443
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.06 E-value=5.5e-06 Score=78.19 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012010 145 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFL 197 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~ 197 (473)
.|..|+||+++|+|| |||++|.|+ ..++++++.+++|..+++++++.++..+
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~-~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l 146 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSD-GGKAFCIIYSVIGIPFTLLFLTAVVQRI 146 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999 999999996 9999999999999999999999988654
No 74
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=97.88 E-value=3.5e-05 Score=74.85 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhhccc--cCCcccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012010 145 KILFPIFWGLMTLST--FGNLEST--TEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATT 201 (473)
Q Consensus 145 ~Yl~slYwai~t~tt--yGdi~p~--t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~~ 201 (473)
.+..++||++.|+|| |||+.|. +. .-++++.+.+++|.++.|+.+|.+..-++.-.
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~-~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECP-LAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 478899999999999 9999874 43 78899999999999999999998877665433
No 75
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.80 E-value=3.1e-05 Score=74.07 Aligned_cols=60 Identities=7% Similarity=0.143 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhhccc--cC-Ccc-cccchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Q 012010 143 LEKILFPIFWGLMTLST--FG-NLE-STTEWLE----VVFNIIVLTSGLLLVTMLIGNIKVFLHATTSK 203 (473)
Q Consensus 143 ~~~Yl~slYwai~t~tt--yG-di~-p~t~~~E----~~~~i~~ml~g~~~~a~iig~i~~i~~~~~~~ 203 (473)
+..+..|++|++.|+|| || |+. |.+. .- ..+.+++++.|.++.+..+|.+.+-+.+...+
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~-~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLME-VYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHT-TCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHH-cCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45588999999999998 99 986 6653 22 78889999999999999999998887655443
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.76 E-value=1.9e-06 Score=84.70 Aligned_cols=54 Identities=19% Similarity=0.492 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhccc--cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012010 146 ILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHAT 200 (473)
Q Consensus 146 Yl~slYwai~t~tt--yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~~ 200 (473)
|..|+||+++|+|| |||++|.|. .+++++++.+++|.++++++++.++..+.+.
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~-~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTP-LGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCS-SHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999 999999986 9999999999999999999999999877553
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=91.43 E-value=0.59 Score=42.36 Aligned_cols=55 Identities=9% Similarity=0.155 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhhccc--cCCcccc----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012010 144 EKILFPIFWGLMTLST--FGNLEST----TEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLH 198 (473)
Q Consensus 144 ~~Yl~slYwai~t~tt--yGdi~p~----t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~ 198 (473)
...-.|++|.+.++|+ +||+... +...=..|..++.+.+.++....++-+.+-++
T Consensus 164 ~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~ 224 (229)
T 4dxw_A 164 GDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI 224 (229)
T ss_dssp SSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477899999999998 7776321 11111233334444445555555555554443
No 78
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=77.01 E-value=18 Score=27.98 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=41.3
Q ss_pred EEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeee
Q 012010 294 SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETT 373 (473)
Q Consensus 294 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~ 373 (473)
...+.||..+-.......++++|++|.+.+.. +++ ...+.+||.+=-. .+.++ .+.+.+++
T Consensus 42 ~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i---~~~--~~~l~~Gd~i~i~------------~~~~H--~~~~~~~~ 102 (114)
T 2ozj_A 42 LFSFADGESVSEEEYFGDTLYLILQGEAVITF---DDQ--KIDLVPEDVLMVP------------AHKIH--AIAGKGRF 102 (114)
T ss_dssp EEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE---TTE--EEEECTTCEEEEC------------TTCCB--EEEEEEEE
T ss_pred EEEECCCCccccEECCCCeEEEEEeCEEEEEE---CCE--EEEecCCCEEEEC------------CCCcE--EEEeCCCc
Confidence 33456776554444456789999999999754 333 4678999977331 12232 45556677
Q ss_pred eeeee
Q 012010 374 EAFGL 378 (473)
Q Consensus 374 ~ll~l 378 (473)
.++.+
T Consensus 103 ~~~~i 107 (114)
T 2ozj_A 103 KMLQI 107 (114)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 79
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=75.16 E-value=19 Score=28.17 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=36.2
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
+....++||..+-..-....++++|++|.+++.. +++ ...+.+||.+=-
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~i 86 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV---DGA--QRRLHQGDLLYL 86 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE---TTE--EEEECTTEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE---CCE--EEEECCCCEEEE
Confidence 4456678888876655556799999999999864 333 367899997743
No 80
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=72.74 E-value=17 Score=32.47 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=51.7
Q ss_pred hceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEe
Q 012010 291 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITL 370 (473)
Q Consensus 291 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~ 370 (473)
.+....+.||+.+-..--..+.+.+|++|.+++.. +|++ ..+.+||++=-. .+ ....++|.
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i---~~~~--~~l~~Gd~~~~p------------~~--~~H~~~a~ 98 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI---ENNK--KTISNGDFLEIT------------AN--HNYSIEAR 98 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE---SSCE--EEEETTEEEEEC------------SS--CCEEEEES
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEE---CCEE--EEECCCCEEEEC------------CC--CCEEEEEC
Confidence 34566789999998777778999999999999865 3443 678999977431 12 24567899
Q ss_pred eeeeeeee
Q 012010 371 ETTEAFGL 378 (473)
Q Consensus 371 ~~~~ll~l 378 (473)
+++.++.+
T Consensus 99 ~~~~~l~i 106 (227)
T 3rns_A 99 DNLKLIEI 106 (227)
T ss_dssp SSEEEEEE
T ss_pred CCcEEEEE
Confidence 99999877
No 81
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=70.82 E-value=27 Score=26.86 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=33.5
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+....+.||..+-..-....++++|++|.+.+.. +|+ ...+.+||.+=
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ 89 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQE--TYRVAEGQTIV 89 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TTE--EEEEETTCEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE---CCE--EEEECCCCEEE
Confidence 3455677887764433345789999999999864 343 36789999874
No 82
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=66.43 E-value=38 Score=25.98 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=43.2
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEee
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLE 371 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~ 371 (473)
+....+.||..+-..-....++++|++|.+.+.. +|+ ...+.+||.+=-. .+. ...+.+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip------------~~~--~H~~~~~~ 96 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV---DGV--IKVLTAGDSFFVP------------PHV--DHGAVCPT 96 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE---TTE--EEEECTTCEEEEC------------TTC--CEEEEESS
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE---CCE--EEEeCCCCEEEEC------------cCC--ceeeEeCC
Confidence 3455678887654333335789999999999864 333 4678999986331 112 23456666
Q ss_pred eeeeeee
Q 012010 372 TTEAFGL 378 (473)
Q Consensus 372 ~~~ll~l 378 (473)
++.++.+
T Consensus 97 ~~~~l~v 103 (116)
T 2pfw_A 97 GGILIDT 103 (116)
T ss_dssp CEEEEEE
T ss_pred CcEEEEE
Confidence 7776665
No 83
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=59.78 E-value=62 Score=25.45 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=33.8
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 293 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
....+.||..+-.. ...+++++|++|.+++.. +|+ ...+.+||.+--
T Consensus 43 ~~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~---~g~--~~~l~~GD~v~i 89 (119)
T 3lwc_A 43 GYGRYAPGQSLTET-MAVDDVMIVLEGRLSVST---DGE--TVTAGPGEIVYM 89 (119)
T ss_dssp EEEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE---TTE--EEEECTTCEEEE
T ss_pred EEEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE---CCE--EEEECCCCEEEE
Confidence 34557788765443 366899999999999864 344 367999998743
No 84
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=57.71 E-value=12 Score=32.14 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=37.7
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+....+.||......-...+++++|++|.+++.....+|.+ ...+.+||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~-~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE-EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE-EEEECCCCEEE
Confidence 45667889887655433457999999999998765554433 67899999873
No 85
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=55.48 E-value=56 Score=25.42 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=34.2
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+....+.||..+-..-....++++|++|.+.+.. +|+ ...+.+||.+=
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI---GEE--TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE---TTE--EEEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE---CCE--EEEeCCCCEEE
Confidence 4456678888765444445789999999999865 333 36789999763
No 86
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=50.03 E-value=39 Score=25.52 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=33.7
Q ss_pred ceEEEecCCCEEEcC--CCc-cCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVITKE--GDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I~~~--Gd~-~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+....+.||..+-.. -.. ..++++|++|.+.+.. +++ ...+.+||.+=
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DGH--TQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TTE--EEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEE
Confidence 345567888876543 333 5789999999999864 333 36789998763
No 87
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=49.76 E-value=64 Score=28.58 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=46.5
Q ss_pred hceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEE-
Q 012010 291 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLIT- 369 (473)
Q Consensus 291 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A- 369 (473)
.+....++||+.+-..-.....+++|++|.+++.. +|+ ...+.+||.+=-. .+. ...+.+
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~g~--~~~l~~Gd~i~ip------------~~~--~H~~~~~ 214 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV---DGK--PFIVKKGESAVLP------------ANI--PHAVEAE 214 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE---TTE--EEEEETTEEEEEC------------TTS--CEEEECC
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE---CCE--EEEECCCCEEEEC------------CCC--cEEEEeC
Confidence 34566789999876555556789999999999864 343 3678999987431 112 335677
Q ss_pred eeeeeeeee
Q 012010 370 LETTEAFGL 378 (473)
Q Consensus 370 ~~~~~ll~l 378 (473)
.++++++.+
T Consensus 215 ~~~~~~ll~ 223 (227)
T 3rns_A 215 TENFKMLLI 223 (227)
T ss_dssp SSCEEEEEE
T ss_pred CCCEEEEEE
Confidence 777766543
No 88
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=49.50 E-value=27 Score=33.87 Aligned_cols=53 Identities=8% Similarity=0.068 Sum_probs=38.2
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+....+.||..+-..-....++.+|++|.+++...+++|+.....+.+||++=
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEE
Confidence 44566788886543323368999999999998776556765456899999773
No 89
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=48.64 E-value=30 Score=33.10 Aligned_cols=53 Identities=8% Similarity=0.034 Sum_probs=37.6
Q ss_pred ceEEEecCCCEEEcCCCc-cCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+....+.||...-..-.. ..++++|++|.+++...+.+|+.....+.+||++=
T Consensus 54 ~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 107 (361)
T 2vqa_A 54 GVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWY 107 (361)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred eEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEE
Confidence 345567888865332233 68999999999998776556654457899999773
No 90
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=48.64 E-value=60 Score=26.61 Aligned_cols=62 Identities=8% Similarity=0.001 Sum_probs=40.1
Q ss_pred CCCccCeEEEEEeeEEEEEEEecC-Cc--eEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCHH
Q 012010 306 EGDPVQRMLFVVRGHLQSSQILHN-NI--KSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAE 381 (473)
Q Consensus 306 ~Gd~~~~lyfI~~G~v~v~~~~~~-g~--~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~~ 381 (473)
.-+..|++|+|++|.+.+...... +. .....+.+|+++--. .. -..+-.|.++|.++.+...
T Consensus 46 ~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVP-------------kG-veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 46 IHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVP-------------AE-CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEEC-------------TT-CEEEEEECTTCEEEEEEES
T ss_pred cCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeC-------------CC-ccCcccCCCceEEEEEEeC
Confidence 345669999999999998754321 11 225788999988541 11 1334566777888877654
No 91
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=48.42 E-value=47 Score=24.51 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=32.6
Q ss_pred ceEEEecCCCEEEcCCCc-cCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+....+.||..+-..-.. ..++++|++|.+.+.. +++ ...+.+||.+=
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~--~~~l~~Gd~~~ 78 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE--EALLAPGMAAF 78 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEE
Confidence 344567888876433323 3579999999999854 233 46789999773
No 92
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=46.42 E-value=39 Score=32.66 Aligned_cols=54 Identities=7% Similarity=0.079 Sum_probs=38.2
Q ss_pred ceEEEecCCCEEEcCCCcc-CeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 292 VKSLIFTKGEVITKEGDPV-QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
+....+.||...-..-... .++++|++|.+++.....+|+.....+.+||.+--
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~i 313 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYV 313 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEE
Confidence 3455678888765433334 79999999999987655566544678899998743
No 93
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=46.08 E-value=61 Score=25.18 Aligned_cols=48 Identities=25% Similarity=0.267 Sum_probs=32.3
Q ss_pred ceEEEecCCCEEEcCCCc-cCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 292 VKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
+....+.||..+-..-.. ..++++|++|.+.+.. .+|+. ..+.+||.+
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~~~~--~~l~~Gd~~ 89 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ--GNGIV--THLKAGDIA 89 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC--STTCE--EEEETTEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE--CCCeE--EEeCCCCEE
Confidence 445667888876544333 3679999999999743 23443 678899876
No 94
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=44.87 E-value=29 Score=26.35 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=40.3
Q ss_pred ecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeeeeee
Q 012010 297 FTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAF 376 (473)
Q Consensus 297 ~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll 376 (473)
..||+.....-+...++++|++|.+.+.. .+++ ...+.+||.+--. .+.++ ...+.+++.++
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~~--~~~l~~Gd~~~ip------------~~~~H--~~~~~~~~~~l 96 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDF--ADGG--SMTIREGEMAVVP------------KSVSH--RPRSENGCSLV 96 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEE--TTSC--EEEECTTEEEEEC------------TTCCE--EEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEE--CCCc--EEEECCCCEEEEC------------CCCcE--eeEeCCCeEEE
Confidence 34555433333333799999999999864 2213 3679999987431 12222 34445678888
Q ss_pred eeCHHHH
Q 012010 377 GLEAEDV 383 (473)
Q Consensus 377 ~l~~~~f 383 (473)
.++....
T Consensus 97 ~i~~~~~ 103 (107)
T 2i45_A 97 LIELSDP 103 (107)
T ss_dssp EEECC--
T ss_pred EEECCCc
Confidence 8776544
No 95
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=44.04 E-value=30 Score=29.59 Aligned_cols=48 Identities=8% Similarity=0.099 Sum_probs=32.1
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
+....++||...-.......++.+|++|.+++.. .+|+ ...+.+||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l--d~ge--~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL--DDGA--KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC--GGGC--EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEE--CCCe--EEEECCCCEE
Confidence 4455677876443323334568899999999854 2233 3678999998
No 96
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=42.87 E-value=47 Score=31.68 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=37.5
Q ss_pred ceEEEecCCCEEEcCCCcc-CeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVITKEGDPV-QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+....+.||..+-..-... .++++|++|.+++...+.+|+.....+.+||++=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEE
Confidence 4456788888764333333 7999999999998754445653357899999874
No 97
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=42.64 E-value=69 Score=23.55 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=33.6
Q ss_pred CeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCH
Q 012010 311 QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEA 380 (473)
Q Consensus 311 ~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~ 380 (473)
.++++|.+|.+.+.. +++ ...+.+||.+--. .+.+ ..+.+.+++.++.++.
T Consensus 51 ~e~~~v~~G~~~~~~---~~~--~~~l~~Gd~~~ip------------~~~~--H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 51 DEVFIVMEGTLQIAF---RDQ--NITLQAGEMYVIP------------KGVE--HKPMAKEECKIMIIEP 101 (102)
T ss_dssp CEEEEEEESEEEEEC---SSC--EEEEETTEEEEEC------------TTCC--BEEEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEE---CCE--EEEEcCCCEEEEC------------CCCe--EeeEcCCCCEEEEEEc
Confidence 789999999998754 333 3567899876331 1222 3455567888887753
No 98
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=42.16 E-value=57 Score=28.28 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=35.5
Q ss_pred ceEEEecCCCEEEcCC-CccCeEEEEEeeEEEEEEEecC---CceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVITKEG-DPVQRMLFVVRGHLQSSQILHN---NIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~v~v~~~~~~---g~~~i~~l~~G~~fG 344 (473)
+....+.||...-..- ....++++|++|.+++...+.+ ++.....+.+||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 4556788888654332 2347999999999998654332 332257899999874
No 99
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=42.00 E-value=1.1e+02 Score=25.63 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=32.1
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 293 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
....+.||..+-..--...++++|++|.+.+.. +++ ...+.+||++-
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~ 105 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL---DDR--VEPLTPLDCVY 105 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE---CCE--EEEECCCCEEE
Confidence 345567776553333346789999999999864 333 46789999773
No 100
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=41.92 E-value=27 Score=26.13 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=31.8
Q ss_pred eEEEecCCCEEEcCCCcc-CeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 293 KSLIFTKGEVITKEGDPV-QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
....++||...-..--.. .++++|++|.+++.. .+|. ....+.+||.+-.
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~g~-~~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET--PEGS-VTSQLTRGVSYTR 71 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE--TTEE-EEEEECTTCCEEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe--CCCC-EEEEEcCCCEEEe
Confidence 445678887542222222 359999999999854 2331 2467999998743
No 101
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=41.83 E-value=1.3e+02 Score=24.06 Aligned_cols=45 Identities=9% Similarity=0.035 Sum_probs=31.0
Q ss_pred EEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 294 SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 294 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
...+.||..-... ..+++++|++|.+.+.. +|+. ..+.+||.+--
T Consensus 61 ~~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~---~g~~--~~l~~GD~i~~ 105 (133)
T 2pyt_A 61 FMQWDNAFFPWTL--NYDEIDMVLEGELHVRH---EGET--MIAKAGDVMFI 105 (133)
T ss_dssp EEEEEEEEEEEEC--SSEEEEEEEEEEEEEEE---TTEE--EEEETTCEEEE
T ss_pred EEEECCCCccccC--CCCEEEEEEECEEEEEE---CCEE--EEECCCcEEEE
Confidence 4456777432332 35799999999999864 3443 57999998743
No 102
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=40.41 E-value=82 Score=24.99 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=30.5
Q ss_pred EecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 296 IFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 296 ~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
...||..-....+ .+++++|++|.+.+.. ++|+. ..+.+||.+--
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~--~~g~~--~~l~~GD~~~i 99 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVD--PDGTV--HAVKAGDAFIM 99 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEEC--TTCCE--EEEETTCEEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEE--CCCeE--EEECCCCEEEE
Confidence 3456655544332 3799999999999853 34543 57899998854
No 103
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=39.79 E-value=34 Score=27.15 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=31.0
Q ss_pred EecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 296 IFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 296 ~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
...||..-+.. +..++++.|++|.+.+.. ++|.. ..+++||.|--
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~--ddG~~--~~l~aGD~~~~ 92 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQ--ADADP--VKIGPGSIVSI 92 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEE--TTCCC--EEECTTEEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEe--CCCeE--EEECCCCEEEE
Confidence 34556555544 334589999999999854 45653 67899998843
No 104
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=38.65 E-value=59 Score=32.83 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=43.0
Q ss_pred HHHHHhhceEEEecCCCEEEcCC-CccCeEEEEEeeEEEEEEEecCCceEE-EEcCCCCeec
Q 012010 285 LENICDRVKSLIFTKGEVITKEG-DPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFSG 344 (473)
Q Consensus 285 l~~L~~~l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~v~v~~~~~~g~~~i-~~l~~G~~fG 344 (473)
+..+-..+....+.||..+---- ...+++++|++|.+++...+.+|.... ..+.+||+|=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 34444566777889988654332 335799999999999887666666654 6799999883
No 105
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=37.97 E-value=1.6e+02 Score=26.25 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=32.6
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 293 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
-...++||...-..- .+++.+|++|.+++.. +|++ ..+.+||++-
T Consensus 53 ~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~---~~~~--~~l~~Gd~~~ 97 (246)
T 1sfn_A 53 FTAEMPAGAQATESV--YQRFAFVLSGEVDVAV---GGET--RTLREYDYVY 97 (246)
T ss_dssp EEEEECTTCEEECCS--SEEEEEEEEEEEEEEC---SSCE--EEECTTEEEE
T ss_pred EEEEECCCCcCCCCc--eeEEEEEEECEEEEEE---CCEE--EEECCCCEEE
Confidence 345678887665442 6789999999999864 3443 6799999774
No 106
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=37.72 E-value=54 Score=27.95 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=27.2
Q ss_pred ccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 309 PVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 309 ~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
..++++++++|.+.+-..+ +|+..-..+.+||+|=-
T Consensus 54 ~~dE~FyvlkG~m~i~v~d-~g~~~~v~l~eGE~f~l 89 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWV-DGRRERADLKEGDIFLL 89 (174)
T ss_dssp SSCEEEEEEESCEEEEEEE-TTEEEEEEECTTCEEEE
T ss_pred CCceEEEEEeeEEEEEEEc-CCceeeEEECCCCEEEe
Confidence 4579999999999986543 35444678999999843
No 107
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=37.37 E-value=35 Score=33.71 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=38.7
Q ss_pred hceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 291 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 291 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
.+....+.||..+...-...+++++|++|...+...+. +......+.+||++
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~-~~~~~~~l~~GDv~ 101 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNN-DDRDSYNLHPGDAQ 101 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECS-SCEEEEEECTTEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEEC-CCCeEEEecCCCEE
Confidence 35677889998776654556899999999999876544 33346788999887
No 108
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=36.55 E-value=1.1e+02 Score=25.92 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=30.4
Q ss_pred EEecCCCEEEc---CCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 295 LIFTKGEVITK---EGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 295 ~~~~~ge~I~~---~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
..+.||...-. ......++++|++|.+.+.... +|......+.+||.+-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~-~~~~~~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGD-KENPKEALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESC-TTSCEEEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECC-cCCcccEEECCCCEEE
Confidence 34566664431 1223368999999999986511 1111257899999874
No 109
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=35.95 E-value=35 Score=34.01 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=38.7
Q ss_pred hceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 291 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 291 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
.+....+.||..+-..-...+++++|++|.+.+...+.++. ....+.+||++
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~ 138 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAI 138 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC-EEEEecCCCEE
Confidence 34566789998776554456899999999999876554443 46788999987
No 110
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=35.52 E-value=64 Score=29.62 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=43.5
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeee
Q 012010 293 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLET 372 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~ 372 (473)
-...+.||.---......+++.||++|.+++.. .+|++ ..+.+|+++=.. .+. ..+++..++
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l--~~g~~--~~L~~Gds~y~p------------~~~--~H~~~N~~~ 134 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTN--TSSSS--KKLTVDSYAYLP------------PNF--HHSLDCVES 134 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC----CCC--EEECTTEEEEEC------------TTC--CCEEEESSC
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEE--CCCcE--EEEcCCCEEEEC------------CCC--CEEEEeCCC
Confidence 355678877642223445789999999999864 11443 678999987331 111 223445577
Q ss_pred eeeeeeCH
Q 012010 373 TEAFGLEA 380 (473)
Q Consensus 373 ~~ll~l~~ 380 (473)
++++.+.+
T Consensus 135 Ar~l~V~k 142 (266)
T 4e2q_A 135 ATLVVFER 142 (266)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 88888754
No 111
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=35.15 E-value=99 Score=26.44 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=30.4
Q ss_pred cCCcCcCCCHHHHHHHHhhceEEEecCCCEEEcCCCccCeEEEE
Q 012010 273 QVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFV 316 (473)
Q Consensus 273 ~~~~f~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI 316 (473)
+.|.|.+++..+.++++.. .+||.|+++...++++-+-
T Consensus 13 ~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit 50 (178)
T 2xp1_A 13 KHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLV 50 (178)
T ss_dssp GSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEE
T ss_pred cCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEE
Confidence 5699999999988887777 3599999999877764443
No 112
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=34.77 E-value=47 Score=28.02 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=30.1
Q ss_pred EEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 294 SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 294 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
...+.||..+-..-....++++|++|.+++.. +|+ ...+.+||++
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v---~g~--~~~l~~GD~i 101 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV---GRA--VSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE---TTE--EEEECTTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEE
Confidence 34556666543333344679999999999854 343 4678999977
No 113
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=34.57 E-value=48 Score=28.28 Aligned_cols=37 Identities=8% Similarity=0.089 Sum_probs=27.0
Q ss_pred CccCeEEEEEeeEEEEEEEecCC----ceEEEEcCCCCeecc
Q 012010 308 DPVQRMLFVVRGHLQSSQILHNN----IKSCCMLGPGNFSGD 345 (473)
Q Consensus 308 d~~~~lyfI~~G~v~v~~~~~~g----~~~i~~l~~G~~fGe 345 (473)
+..++++++++|.+.+-..+ +| +..-..+.+||+|=-
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d-~g~~~~~~~dv~i~eGdmfll 92 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVD-ETDAEPKFIDIIINEGDSYLL 92 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEE-CSSSSCEEEEEEECTTEEEEE
T ss_pred CCCceEEEEEeCEEEEEEEc-CCCcccceeeEEECCCCEEEc
Confidence 34568999999999987654 24 223578999999843
No 114
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=34.52 E-value=1e+02 Score=25.06 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=31.1
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 293 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
....+.||..+-..--...++++|++|.+.+.. +++. ...+.+||.+-
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~---~~~~-~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---RGKP-ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEE---TTSC-CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEE---CCEE-EEEECCCCEEE
Confidence 345567777653322334789999999999864 2332 24688888773
No 115
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=34.25 E-value=50 Score=27.48 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=29.7
Q ss_pred EEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 294 SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 294 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
...+.||..+-..-....++++|++|.+++.. +|+ ...+.+||++
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v---~g~--~~~l~~Gd~i 92 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV---GET--ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE---TTE--EEEEETTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEE
Confidence 33456665543333344679999999999864 333 4678888876
No 116
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=33.86 E-value=67 Score=32.53 Aligned_cols=58 Identities=9% Similarity=0.069 Sum_probs=42.2
Q ss_pred HHHHhhceEEEecCCCEEEcCC-CccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCee
Q 012010 286 ENICDRVKSLIFTKGEVITKEG-DPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFS 343 (473)
Q Consensus 286 ~~L~~~l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~f 343 (473)
..+-..+....+.||..+---= ...+++++|++|.+++...+.+|.+. ...+.+||++
T Consensus 368 ~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 368 RWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp HHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 4444556777889998664332 23579999999999998766666655 3579999987
No 117
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=33.69 E-value=54 Score=28.21 Aligned_cols=34 Identities=9% Similarity=0.046 Sum_probs=26.8
Q ss_pred CeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 311 QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 311 ~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
.++++|++|.+.+....+.|+.....+.+||.+=
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ 130 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVY 130 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCCEEEEEECTTCEEE
T ss_pred CEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEE
Confidence 6999999999998765544555467899999873
No 118
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=33.62 E-value=68 Score=25.52 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=31.5
Q ss_pred eEEEecCCCEEEcCCCc-cCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 293 KSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
....++||..+-..--. ..++++|++|.+.+.. +++ ...+.+||.+
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i 106 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGK--DVPIKAGDVC 106 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTE--EEEEETTEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEE---CCE--EEEeCCCcEE
Confidence 34567888766432222 3689999999999864 333 3678899876
No 119
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=33.57 E-value=50 Score=35.35 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhccc-cCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012010 145 KILFPIFWGLMTLST-FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHA 199 (473)
Q Consensus 145 ~Yl~slYwai~t~tt-yGdi~p~t~~~E~~~~i~~ml~g~~~~a~iig~i~~i~~~ 199 (473)
....+++|++.++++ -++..|.+. ..+++.+++++++.++.+..-+++++.+..
T Consensus 563 ~~~~~~~~~~~~l~~~g~~~~p~~~-~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQGADISPRSL-SGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC------CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCcCCcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456788899999888 556888775 999999999999999999999999999863
No 120
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=33.55 E-value=69 Score=26.17 Aligned_cols=50 Identities=6% Similarity=0.031 Sum_probs=34.6
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeecc
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGD 345 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe 345 (473)
+....++||..+-.......+.++|++|..+. ..|... -..+++|+++=.
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~----~~g~~~~~~~~~~Gd~~~~ 96 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV----RGGKAAGGDTAIAPGYGYE 96 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE----TTCGGGTSEEEESSEEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE----cCCCEecceEeCCCEEEEE
Confidence 55677899988876655567789999999984 234321 145678887744
No 121
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=33.51 E-value=41 Score=25.92 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=29.2
Q ss_pred EEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 294 SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 294 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
...+.||..+-..-....++++|++|.+.+.. +++. ...+.+||.+=
T Consensus 31 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~-~~~l~~Gd~i~ 77 (117)
T 2b8m_A 31 HIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL---EDQE-PHNYKEGNIVY 77 (117)
T ss_dssp EEEEETTCBCCCEECSSCEEEEEEESEEEEEE---TTSC-CEEEETTCEEE
T ss_pred EEEECCCCcCCCEeCCCcEEEEEEeCEEEEEE---CCEE-EEEeCCCCEEE
Confidence 34456666542222234679999999999864 2332 22788999763
No 122
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=33.23 E-value=94 Score=26.36 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=31.1
Q ss_pred EEEecCCCEEEcC--CCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 294 SLIFTKGEVITKE--GDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 294 ~~~~~~ge~I~~~--Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
...++||...-.. .....++++|++|.+.+.. +++ ...+.+||.+=
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~---~~~--~~~l~~GD~i~ 155 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF---DEQ--WHELQQGEHIR 155 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE---CCE--EEEeCCCCEEE
Confidence 3456777765421 2234689999999999865 333 36799999773
No 123
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=33.14 E-value=1.4e+02 Score=22.09 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=30.7
Q ss_pred eEEEecCCCEEEcCCCc-cCeE-EEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 293 KSLIFTKGEVITKEGDP-VQRM-LFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~-~~~l-yfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
....+.||..+-..-.. ..++ ++|++|.+.+.. .+|+ ...+.+||.+-
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~--~~~~--~~~l~~Gd~~~ 85 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG--DGDA--VIPAPRGAVLV 85 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC--GGGC--EEEECTTEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe--CCCE--EEEECCCCEEE
Confidence 34457788776433222 2466 899999998754 2133 36789998763
No 124
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=33.00 E-value=70 Score=32.14 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=39.4
Q ss_pred hhceEEEecCCCEEEcCC-CccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCee
Q 012010 290 DRVKSLIFTKGEVITKEG-DPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFS 343 (473)
Q Consensus 290 ~~l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~f 343 (473)
..+....+.||..+-.-= ...+++++|++|.+++...+.+|.+. ...+.+||++
T Consensus 338 is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 338 LSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp CCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 345677788888664332 22579999999999998766666655 3579999987
No 125
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=32.70 E-value=86 Score=31.82 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=44.8
Q ss_pred HHHHHhhceEEEecCCCEEEcCC-CccCeEEEEEeeEEEEEEEecCCceE-EEEcCCCCeec
Q 012010 285 LENICDRVKSLIFTKGEVITKEG-DPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSG 344 (473)
Q Consensus 285 l~~L~~~l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fG 344 (473)
+..|-..+....+.||-++---= -.++++.+|++|.+++...+.+|+.. ...+.+||+|=
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v 450 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFI 450 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 44444556778899998875332 33579999999999998877777665 57899999883
No 126
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=32.57 E-value=1.6e+02 Score=22.22 Aligned_cols=48 Identities=6% Similarity=0.024 Sum_probs=33.9
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
+....+.||+.-.. ....++++|++|.+.+.. .+|+ ...+.+||.+--
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i--~~g~--~~~l~~GD~i~i 80 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTT--EDGK--KYVIEKGDLVTF 80 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE--TTCC--EEEEETTCEEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEE--CCCC--EEEECCCCEEEE
Confidence 44566788876554 345899999999999864 2243 367999998743
No 127
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=32.29 E-value=46 Score=33.01 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=38.8
Q ss_pred hceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 291 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 291 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
.+....+.||..+-..-...+++++|++|.+.+...+.+ ......+.+||++
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~-~~~~~~l~~GDv~ 113 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPD-SRDSYILEQGHAQ 113 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSS-CEEEEEEETTEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCC-CCEEEEeCCCCEE
Confidence 456778899988876644568999999999998765443 3346778888877
No 128
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=32.24 E-value=1.8e+02 Score=24.09 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=23.9
Q ss_pred ccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 309 PVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 309 ~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
..+++++|++|.+++.. +|+ ...+.+||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i---~g~--~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII---DGR--KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE---TTE--EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE---CCE--EEEEcCCCEEE
Confidence 35689999999999864 454 46789999873
No 129
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=30.74 E-value=60 Score=27.08 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=31.8
Q ss_pred ceEEEecCCCEEE--cCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVIT--KEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I~--~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+....+.||.... +.-+..+++++|++|.+++.. +++ ...+.+||.+-
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~---~~~--~~~l~~GD~i~ 94 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD---DQG--EHPMVPGDCAA 94 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE---CCE--EEEeCCCCEEE
Confidence 3455677877542 222223689999999999865 233 46789998763
No 130
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=30.04 E-value=60 Score=25.52 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=30.4
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 293 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
....+.||..+-..--...++++|++|.+++.. +++ ...+.+||.+=
T Consensus 51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~ 97 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK---EQG--EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC---SSC--EEEEETTEEEE
T ss_pred EEEEECCCCcCCceeCCCcEEEEEEEeEEEEEE---CCE--EEEECCCCEEE
Confidence 334556666553333336789999999998754 333 35788888763
No 131
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=29.76 E-value=1e+02 Score=30.74 Aligned_cols=60 Identities=7% Similarity=0.067 Sum_probs=44.4
Q ss_pred HHHHHhhceEEEecCCCEEEcCC-CccCeEEEEEeeEEEEEEEecCCceEE-EEcCCCCeec
Q 012010 285 LENICDRVKSLIFTKGEVITKEG-DPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFSG 344 (473)
Q Consensus 285 l~~L~~~l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~v~v~~~~~~g~~~i-~~l~~G~~fG 344 (473)
+..+-..+....+.||.+..-.= -...++++|++|.+++...+.+|...+ ..+.+||+|=
T Consensus 317 L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v 378 (459)
T 2e9q_A 317 LRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLM 378 (459)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEE
Confidence 44455566777888888765332 335799999999999988777777664 5799999883
No 132
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=29.48 E-value=93 Score=28.73 Aligned_cols=63 Identities=6% Similarity=0.000 Sum_probs=40.2
Q ss_pred EEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeeeeeeeeeCH
Q 012010 302 VITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEA 380 (473)
Q Consensus 302 ~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~~~ll~l~~ 380 (473)
..++ -+..+++|++++|.+.+-..+ +|+..-..+.+|++|=-- .+. ..+=++-.+|..+.|.+
T Consensus 44 ~d~H-~~~~dE~FyqlkG~m~l~~~d-~g~~~~V~i~eGemfllP------------~gv--~HsP~r~~et~gLviE~ 106 (286)
T 2qnk_A 44 KDYH-IEEGEEVFYQLEGDMVLRVLE-QGKHRDVVIRQGEIFLLP------------ARV--PHSPQRFANTVGLVVER 106 (286)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEE-TTEEEEEEECTTEEEEEC------------TTC--CEEEEECTTCEEEEEEE
T ss_pred ccCc-CCCCCeEEEEEeCeEEEEEEe-CCceeeEEECCCeEEEeC------------CCC--CcCCcccCCeEEEEEee
Confidence 3344 345689999999999987653 354445789999988431 111 22344556677776663
No 133
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=29.47 E-value=74 Score=28.22 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=23.5
Q ss_pred CccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 308 DPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 308 d~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
...+++|+|++|.++... .+|+ ...+++|+.+
T Consensus 150 Hp~EEiy~VLsG~~e~~v--~~g~--~~~l~pGd~v 181 (217)
T 4b29_A 150 HLPEELYSVVSGRALFHL--RNAP--DLMLEPGQTR 181 (217)
T ss_dssp CSSEEEEEEEEECEEEEE--TTSC--CEEECTTCEE
T ss_pred CCCceEEEEEeCCEEEEE--CCCC--EEecCCCCEE
Confidence 345789999999988754 2233 3678999876
No 134
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=28.97 E-value=54 Score=27.76 Aligned_cols=46 Identities=9% Similarity=-0.044 Sum_probs=29.6
Q ss_pred EEecC-CCE-EEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 295 LIFTK-GEV-ITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 295 ~~~~~-ge~-I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
..++| |.- =-.....+..++||++|.+++.. +++ ...+.+||+|=-
T Consensus 93 v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl---~g~--~~~L~~Gds~~i 140 (166)
T 2vpv_A 93 LKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV---CKN--KFLSVKGSTFQI 140 (166)
T ss_dssp EEECSSGGGCEEEECCSEEEEEEEEESEEEEEE---TTE--EEEEETTCEEEE
T ss_pred EEECCCCCCCCCccCCCceEEEEEEEeEEEEEE---CCE--EEEEcCCCEEEE
Confidence 45667 431 11122345789999999999865 333 357899998743
No 135
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=28.90 E-value=1.1e+02 Score=27.30 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=35.8
Q ss_pred hceEEEecCCCEEEc-CCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 291 RVKSLIFTKGEVITK-EGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 291 ~l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
.+....++||..+-. +-....+.++|++|+..+.. +|+. ..+.+||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~~~--~~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EENY--YPVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TTEE--EEEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CCEE--EEcCCCCEEE
Confidence 456778899987754 33445789999999999754 3443 5899999874
No 136
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=28.72 E-value=18 Score=27.59 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=33.4
Q ss_pred ceEEEecCCCEEEcCCCc-cCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 292 VKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
++...++||+-+--.--. ....++|.+|.+.+.. .+|......+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~~~~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGTRSLAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSCEECCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCceEEEEecCCcEE
Confidence 456678898877555433 3467888899998853 4555545667888865
No 137
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=28.72 E-value=64 Score=26.58 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=31.1
Q ss_pred eEEEecCCCE-E-EcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 293 KSLIFTKGEV-I-TKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 293 ~~~~~~~ge~-I-~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
....+.||.. . .+.-....++++|++|.+.+.. +++ ...+.+||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~--~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM---END--QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE---TTE--EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE---CCE--EEEeCCCCEE
Confidence 4466788874 2 1111245789999999999864 333 3678999987
No 138
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=28.03 E-value=58 Score=31.88 Aligned_cols=51 Identities=8% Similarity=0.061 Sum_probs=40.3
Q ss_pred hceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCe
Q 012010 291 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNF 342 (473)
Q Consensus 291 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~ 342 (473)
.+....+.||..+...--..+++++|++|...+...+.++.+ ...+.+||.
T Consensus 53 s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~-~~~l~~GDv 103 (397)
T 2phl_A 53 RLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRR-EYFFLTSDN 103 (397)
T ss_dssp EEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEE-EEEEEESSC
T ss_pred EEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcE-EEEECCCCc
Confidence 355778899988765555668999999999998877666654 678999998
No 139
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=27.13 E-value=59 Score=31.80 Aligned_cols=77 Identities=9% Similarity=-0.056 Sum_probs=48.7
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEE--
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLIT-- 369 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A-- 369 (473)
+....++||+..-..-.....+|+|++|...+.. +|+ ...+.+||+|-.- ... ......
T Consensus 296 ~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V---~ge--~~~~~~GD~~~iP------------~g~--~H~~~N~g 356 (394)
T 3bu7_A 296 ASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV---GGK--RFDWSEHDIFCVP------------AWT--WHEHCNTQ 356 (394)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE---TTE--EEEECTTCEEEEC------------TTC--CEEEEECC
T ss_pred EEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE---CCE--EEEEeCCCEEEEC------------CCC--eEEeEeCC
Confidence 3566788888776555556789999999986543 444 3678999988541 111 122333
Q ss_pred -eeeeeeeeeCHHHHHHHH
Q 012010 370 -LETTEAFGLEAEDVKYVT 387 (473)
Q Consensus 370 -~~~~~ll~l~~~~f~~ll 387 (473)
.+++.++.++-.-+.+.+
T Consensus 357 ~~e~~~ll~i~D~Pl~~~L 375 (394)
T 3bu7_A 357 ERDDACLFSFNDFPVMEKL 375 (394)
T ss_dssp SSCCEEEEEEESHHHHHHT
T ss_pred CCCCeEEEEeeCHHHHHHh
Confidence 246778877655554433
No 140
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=26.42 E-value=91 Score=24.20 Aligned_cols=48 Identities=10% Similarity=0.078 Sum_probs=29.8
Q ss_pred ceEEEecCCCEEE--cCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVIT--KEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I~--~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+....+.||..+- ..-+....+|+|++|.+.+.. +++ ...+.+||.+=
T Consensus 28 ~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i---~~~--~~~l~~Gd~i~ 77 (125)
T 3cew_A 28 VSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI---DGE--KIELQAGDWLR 77 (125)
T ss_dssp EEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE---TTE--EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEE
Confidence 3445677776542 222223457779999999764 333 36788888763
No 141
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=25.90 E-value=50 Score=32.26 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=35.5
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 293 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
....+.||+.+-..--...++|||++|.-.... .+|++ ..+.+||++--
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~--v~G~~--~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTI--VDGHK--VELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEE--ETTEE--EEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEE--ECCEE--EEEcCCCEEEE
Confidence 677889999886555555689999999875422 34554 67899998843
No 142
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=25.87 E-value=73 Score=26.30 Aligned_cols=52 Identities=6% Similarity=-0.089 Sum_probs=31.8
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecC----CceEEEEcCCCCeec
Q 012010 293 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHN----NIKSCCMLGPGNFSG 344 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~----g~~~i~~l~~G~~fG 344 (473)
....+.||..+-..-....++++|++|.+.+.....+ ++.....+.+||.+=
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 3455777765422222346799999999998652211 111356789999763
No 143
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=25.57 E-value=1.1e+02 Score=27.24 Aligned_cols=47 Identities=11% Similarity=0.045 Sum_probs=34.0
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
+....++||..+-..--...++.+|++|.+++.. +|+ ...+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~---~~~--~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV---GDV--TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE---TTE--EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE---CCE--EEEECCCCEE
Confidence 4455688888776554556789999999999864 343 3678999844
No 144
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=24.73 E-value=71 Score=24.62 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=24.3
Q ss_pred CccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 308 DPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 308 d~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
...+++++|++|.+++.. . +++....+.+||.+--
T Consensus 51 ~~~~E~~~Vl~G~~~l~~--~-~~~~~~~l~~Gd~i~i 85 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIEC--E-GDTAPRVMRPGDWLHV 85 (112)
T ss_dssp CSSEEEEEEEESCEEEEE--T-TCSSCEEECTTEEEEE
T ss_pred CCccEEEEEEeCeEEEEE--C-CEEEEEEECCCCEEEE
Confidence 345789999999999865 2 2221157899998743
No 145
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=24.42 E-value=1.4e+02 Score=29.97 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=43.8
Q ss_pred HHHHHhhceEEEecCCCEEEcCC-CccCeEEEEEeeEEEEEEEecCCceEE-EEcCCCCee
Q 012010 285 LENICDRVKSLIFTKGEVITKEG-DPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFS 343 (473)
Q Consensus 285 l~~L~~~l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~v~v~~~~~~g~~~i-~~l~~G~~f 343 (473)
+..|--.+....+.||-+.--.= -.++++.+|++|.+++...+.+|+..+ ..+.+||+|
T Consensus 353 L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~ 413 (496)
T 3ksc_A 353 LRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRAL 413 (496)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEE
Confidence 33444456777888887764332 345799999999999988877777664 689999988
No 146
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=24.38 E-value=1.2e+02 Score=27.88 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=36.5
Q ss_pred hhceEEEecCCCEEEc-CCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 290 DRVKSLIFTKGEVITK-EGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 290 ~~l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
..+....++||..|-. +-....+.++|++|+..+.. +|+ ...+.+||++
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~---~~~--~~~v~~GD~~ 240 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL---NQD--WVEVEAGDFM 240 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE---TTE--EEEEETTCEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE---CCE--EEEeCCCCEE
Confidence 3466788999999975 44444688999999998753 344 3678999986
No 147
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=24.31 E-value=79 Score=31.13 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=38.8
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCee
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 343 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 343 (473)
+....+.||..+.-.--..+++++|++|...+...+.++ .....+.+||.|
T Consensus 46 l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~-~~~~~l~~GDv~ 96 (418)
T 3s7i_A 46 IVQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNN-RKSFNLDEGHAL 96 (418)
T ss_dssp EEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSC-EEEEEEETTEEE
T ss_pred EEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCC-EEEEEecCCCEE
Confidence 345567888888776555688999999999887666544 346888999988
No 148
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=24.25 E-value=2.4e+02 Score=21.56 Aligned_cols=81 Identities=10% Similarity=-0.005 Sum_probs=47.1
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEe--
Q 012010 293 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITL-- 370 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~-- 370 (473)
....+.||...-..--...++++|++|.+.+.. +|+ ...+.+||.+=-. .+... .+.+.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i---~~~--~~~l~~Gd~~~i~------------~~~~H--~~~~~~~ 97 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI---NDE--DFPVTKGDLIIIP------------LDSEH--HVINNNQ 97 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEE---TTE--EEEEETTCEEEEC------------TTCCE--EEEECSS
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEE---CCE--EEEECCCcEEEEC------------CCCcE--EeEeCCC
Confidence 344566776443333345789999999999865 343 3678999877431 11222 23332
Q ss_pred eee--eeeeeCHHHHHHHHHHhHH
Q 012010 371 ETT--EAFGLEAEDVKYVTQHFRY 392 (473)
Q Consensus 371 ~~~--~ll~l~~~~f~~ll~~~P~ 392 (473)
+++ .++.++.+-+..++.+-++
T Consensus 98 ~~~~~~~i~f~~~~~~~~~~~~~~ 121 (128)
T 4i4a_A 98 EDFHFYTIWWDKESTLNFLTRLEQ 121 (128)
T ss_dssp SCEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECHHHHHHHHHhccc
Confidence 333 3456777777766665543
No 149
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=23.71 E-value=1.2e+02 Score=27.63 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=33.8
Q ss_pred ceEEEecCCCEEEc-CCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 292 VKSLIFTKGEVITK-EGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 292 l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
+....+.||..+-. .--...++++|++|.+.+.. +++ ...+.+||++=
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i---~~~--~~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DNE--WYPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TTE--EEEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE---CCE--EEEECCCCEEE
Confidence 44557888887633 23345789999999999865 333 36789999873
No 150
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=23.06 E-value=1e+02 Score=29.30 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=26.6
Q ss_pred cCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 310 VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 310 ~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
..++++|++|.+++.....+|......+.+||++=
T Consensus 71 ~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ 105 (350)
T 1juh_A 71 HYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGS 105 (350)
T ss_dssp CEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEE
T ss_pred ceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEE
Confidence 57899999999999765434443467899999863
No 151
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=22.96 E-value=1.2e+02 Score=26.15 Aligned_cols=46 Identities=15% Similarity=0.293 Sum_probs=35.4
Q ss_pred hceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 291 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 291 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
.+....+.||..+-.....+.++.+|++|..+ +++ ..+.+||++=.
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~-----~~~~~Gd~~~~ 171 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET-----DRFGAGDIEIA 171 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS-----SEEETTCEEEE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc-----EEECCCeEEEe
Confidence 45677889999998888888999999999965 122 35888988743
No 152
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=22.66 E-value=1.8e+02 Score=25.79 Aligned_cols=47 Identities=6% Similarity=-0.043 Sum_probs=33.3
Q ss_pred EEEecC-CCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecc
Q 012010 294 SLIFTK-GEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 345 (473)
Q Consensus 294 ~~~~~~-ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 345 (473)
...++| |..+-..--...++++|++|.+++.. +++ ...+.+||.+--
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~i 196 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV---EGC--TVEMKFGTAYFC 196 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEE---TTE--EEEECTTCEEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEE---CCE--EEEECCCCEEEE
Confidence 445888 77665444445789999999999864 333 356999998754
No 153
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=21.92 E-value=77 Score=18.69 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHHHHhhhh
Q 012010 410 WRTWAAVAIQLAWRRYKHRLT 430 (473)
Q Consensus 410 ~~~~~~~~~q~~~~~~~~r~~ 430 (473)
.+.+.+..+|.+|+++.-+..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356889999999999986543
No 154
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=21.01 E-value=2.3e+02 Score=27.26 Aligned_cols=77 Identities=10% Similarity=0.009 Sum_probs=54.0
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeee
Q 012010 293 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLET 372 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~ 372 (473)
....++||+..-..-..+..+|.|.+|.-.+.. +|+ .....+||.|--- +-...+..+.++
T Consensus 282 ~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I---~~~--~~~w~~gD~fvvP--------------~w~~h~~~n~~~ 342 (368)
T 3nw4_A 282 EFHRLRAGTETATRNEVGSTVFQVFEGAGAVVM---NGE--TTKLEKGDMFVVP--------------SWVPWSLQAETQ 342 (368)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEESCEEEEE---TTE--EEEECTTCEEEEC--------------TTCCEEEEESSS
T ss_pred heEEECCCCccCCeeccccEEEEEEeCcEEEEE---CCE--EEEecCCCEEEEC--------------CCCcEEEEeCCC
Confidence 455678887765555667789999999988754 333 3678999998551 112345677789
Q ss_pred eeeeeeCHHHHHHHHH
Q 012010 373 TEAFGLEAEDVKYVTQ 388 (473)
Q Consensus 373 ~~ll~l~~~~f~~ll~ 388 (473)
+.++.++-.-+.+-+.
T Consensus 343 a~Lf~~~D~Pl~~~LG 358 (368)
T 3nw4_A 343 FDLFRFSDAPIMEALS 358 (368)
T ss_dssp EEEEEEESHHHHHHTT
T ss_pred EEEEEEeCHHHHHHhC
Confidence 9999998776665543
No 155
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=20.70 E-value=3.3e+02 Score=25.04 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=51.1
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEee
Q 012010 292 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLE 371 (473)
Q Consensus 292 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~ 371 (473)
.+...+.+|+.+..+.+. +.++.+++|...|.. +|. ...+.+||..--- ....++..+.+
T Consensus 209 teV~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~---~~q--~~~L~~~DsLLIp--------------a~~~y~~~r~~ 268 (286)
T 2qnk_A 209 TQVIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTM---GGR--RLSLAPDDSLLVL--------------AGTSYAWERTQ 268 (286)
T ss_dssp EEEEEECSEEEEECCCSS-CEEEEEEESCEEEEE---TTE--EEEECTTEEEEEC--------------TTCCEEEEECT
T ss_pred eEEEEEcCCccccccCcC-cEEEEEEcCceEEEE---CCe--EEeccCCCEEEec--------------CCCeEEEEecC
Confidence 566779999999999888 999999999987643 333 3678888865331 12356788888
Q ss_pred eeeeeeeCH
Q 012010 372 TTEAFGLEA 380 (473)
Q Consensus 372 ~~~ll~l~~ 380 (473)
+|.++.+..
T Consensus 269 gsv~L~I~~ 277 (286)
T 2qnk_A 269 GSVALSVTQ 277 (286)
T ss_dssp TCEEEEEEE
T ss_pred CeEEEEEEE
Confidence 888888754
No 156
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=20.41 E-value=3.5e+02 Score=25.61 Aligned_cols=74 Identities=14% Similarity=0.054 Sum_probs=47.3
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeecchhhhhhccCCcccCCCCceeEEEEeee
Q 012010 293 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLET 372 (473)
Q Consensus 293 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~v~A~~~ 372 (473)
....++||..--..-....++|+|++|..++.. +|+ ...+.+||.|---. . ....+.+.++
T Consensus 271 ~~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v---~~~--~~~~~~GD~~~vP~------------~--~~H~~~n~e~ 331 (354)
T 2d40_A 271 FLQLLPKGFASRVARTTDSTIYHVVEGSGQVII---GNE--TFSFSAKDIFVVPT------------W--HGVSFQTTQD 331 (354)
T ss_dssp EEEEECTTCBCCCBEESSCEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECT------------T--CCEEEEEEEE
T ss_pred EEEEECCCCCCCceecCCcEEEEEEeCeEEEEE---CCE--EEEEcCCCEEEECC------------C--CeEEEEeCCC
Confidence 345677776554433445689999999998865 343 47889999885410 1 1234555678
Q ss_pred eeeeeeCHHHHHH
Q 012010 373 TEAFGLEAEDVKY 385 (473)
Q Consensus 373 ~~ll~l~~~~f~~ 385 (473)
+.+++++-.-+.+
T Consensus 332 ~~l~~~~d~p~~~ 344 (354)
T 2d40_A 332 SVLFSFSDRPVQE 344 (354)
T ss_dssp EEEEEEESHHHHH
T ss_pred EEEEEEcCHHHHH
Confidence 8888886554433
No 157
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=20.23 E-value=56 Score=23.26 Aligned_cols=14 Identities=43% Similarity=0.793 Sum_probs=11.4
Q ss_pred HHhhCCHHHHHHHH
Q 012010 250 MISNLPEGLRRDIK 263 (473)
Q Consensus 250 il~~Lp~~Lr~~i~ 263 (473)
.|+.||++||.+|.
T Consensus 8 wL~~LP~~Lq~kV~ 21 (70)
T 2lh0_A 8 FLDELPESLSRKIG 21 (70)
T ss_dssp GGGGSCHHHHHHHH
T ss_pred HHHhCCHHHHHHHH
Confidence 67888888888876
No 158
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=20.11 E-value=82 Score=17.90 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=15.5
Q ss_pred chHHHHHHHHHHHHHHhhh
Q 012010 411 RTWAAVAIQLAWRRYKHRL 429 (473)
Q Consensus 411 ~~~~~~~~q~~~~~~~~r~ 429 (473)
+.+.+..+|.+|+.+..+.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4578999999999998653
No 159
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=20.04 E-value=1.5e+02 Score=26.61 Aligned_cols=46 Identities=11% Similarity=0.239 Sum_probs=31.0
Q ss_pred EEEecCCCEEEcCC--CccCeEEEEEeeEEEEEEEecCCceEEEEcCCCCeec
Q 012010 294 SLIFTKGEVITKEG--DPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 344 (473)
Q Consensus 294 ~~~~~~ge~I~~~G--d~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 344 (473)
...++||...-..- ...+++.+|++|.+++.. +|+ ...+.+||++-
T Consensus 63 ~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~---~~~--~~~L~~Gd~~~ 110 (261)
T 1rc6_A 63 LVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA---EGK--TFALSEGGYLY 110 (261)
T ss_dssp EEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE---TTE--EEEEETTEEEE
T ss_pred EEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE---CCE--EEEECCCCEEE
Confidence 45567776553321 224679999999999865 343 36789999774
Done!