BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012011
         (473 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Y9M|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
           Awamori In Spacegroup P212121
 pdb|1Y9G|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
           Awamori Complexed With Fructose
 pdb|1Y4W|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
           Awamori In Spacegroup P21
          Length = 518

 Score = 32.0 bits (71), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 301 DEELRSQGRCPLTPEEIGLLLAALGFDKSTRLYLASHKVYGGEARISALRRLFP 354
           DE   S    PLTP+  G++  ++  D+S      S +V+GG+   +   ++FP
Sbjct: 440 DETFASVYHGPLTPDSTGVVKLSIFVDRS------SVEVFGGQGETTLTAQIFP 487


>pdb|1ZY7|A Chain A, Crystal Structure Of The Catalytic Domain Of An Adenosine
           Deaminase That Acts On Rna (hadar2) Bound To Inositol
           Hexakisphosphate (ihp)
 pdb|1ZY7|B Chain B, Crystal Structure Of The Catalytic Domain Of An Adenosine
           Deaminase That Acts On Rna (hadar2) Bound To Inositol
           Hexakisphosphate (ihp)
          Length = 403

 Score = 30.4 bits (67), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 51  SLPQKSQGYIQVFLDGGLNQQR---MGICDAVAVTKILNATLVIPYLEVNPVWQDSSSFM 107
           ++P +S   IQ + DG L  +R   M   D +A   ++     +  + V P++  S    
Sbjct: 192 TIPVRSNASIQTW-DGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIILG 250

Query: 108 DIYDVDHFINVLKDDISIVKELP 130
            +Y  DH    +   IS +++LP
Sbjct: 251 SLYHGDHLSRAMYQRISNIEDLP 273


>pdb|4FUW|A Chain A, Crystal Structure Of Ego3 Mutant
 pdb|4FUW|B Chain B, Crystal Structure Of Ego3 Mutant
          Length = 161

 Score = 29.6 bits (65), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 374 KASLLAALDYYVSMHSNIFISASPGNM-----HNALMGHRTYENLKTIKPNMALLGQLFL 428
           K  L   L  Y S+ S++ I+A+ G +      N  +   +   + ++  N+ ++  L  
Sbjct: 10  KGFLENTLKPYGSLQSSMIITATNGGILSYATSNNDVPKNSINEINSVN-NLKMMSLLIK 68

Query: 429 NKSLSWSEFQQAVVEGHENRQGQIRIRKPKQSIYTYPAPD 468
           +K   WSE +    E H N    + I   K  IYTY   D
Sbjct: 69  DK---WSEDENDTEEQHSNSCYPVEIDSFKTKIYTYEMED 105


>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
           Plantarum
 pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
           Plantarum
 pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
           Plantarum
 pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
           Plantarum
          Length = 449

 Score = 29.3 bits (64), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 276 KAEKLALAKYRQMIWQGRVLNSQFTDEELRSQGRCPLTPEEI 317
           +A K   AKY + +W      S F  EELRSQG   L+  E+
Sbjct: 184 EARKQVNAKYPETLWLAESAGSGFI-EELRSQGYTGLSDSEL 224


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,658,087
Number of Sequences: 62578
Number of extensions: 530919
Number of successful extensions: 1057
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1057
Number of HSP's gapped (non-prelim): 4
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)