BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012011
         (473 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
           GN=At1g04910 PE=1 SV=1
          Length = 519

 Score =  262 bits (669), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 166/460 (36%), Positives = 249/460 (54%), Gaps = 45/460 (9%)

Query: 21  RPSANAKQSDLWLPLANQGWR-SCAQSANNPSLPQKSQGYIQVFLDGGLNQQRMGICDAV 79
           RPS      +LW    + GWR S A  ++ P   +++ GY++V  +GGLNQQR  IC+AV
Sbjct: 53  RPS-KINVEELWESAKSGGWRPSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAV 111

Query: 80  AVTKILNATLVIPYLEVNPVWQDSSSFMDIYDVDHFINVLKDDISIVKELPN-EFSWSTR 138
              +I+NATLV+P L+ N  W D S F  IYDV+HFI  LK D+ IV ++P+   +  T+
Sbjct: 112 LAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTK 171

Query: 139 EYYATAIRATRIKTAPVHASANWYLENVLPVLQSYGVAAISPFSHRLTFDNLPMDIQRLR 198
           +  A  IR  R   AP+     WYL   L  ++ +    ++PFSHRL  +    + QRLR
Sbjct: 172 KIKAFQIRPPR--DAPIE----WYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLR 225

Query: 199 CKANFQALIFVPHIRALGDALVSRLRYPSIKNRGLDDVHLEETAYTNKIQEPLKFVVLHL 258
           C+ N+ AL F PHI  L +++V +LR     ++G                    F+ +HL
Sbjct: 226 CRVNYHALRFKPHIMKLSESIVDKLR-----SQG-------------------HFMSIHL 261

Query: 259 RFDKDMAAHSACDFGGGKAEKLALAKYRQMIWQGRVLNSQFTDEELRSQGRCPLTPEEIG 318
           RF+ DM A + C       E+  L KYR+  +  + L       E R+ G+CPLTPEE+G
Sbjct: 262 RFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADKRL----IYNERRAIGKCPLTPEEVG 317

Query: 319 LLLAALGFDKSTRLYLASHKVYGGEARISALRRLFPLMEDKKSLASSEERAGVKGKASLL 378
           L+L A+ FD STR+YLA+ +++GGE  +   R LFP +++  S+  SEE +    +  + 
Sbjct: 318 LILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLDNHSSVDPSEELSAT-SQGLIG 376

Query: 379 AALDYYVSMHSNIFISA--SPGNMHNALMGHRTYENLK-TIKPNMALLGQLFLNKSLS-W 434
           +A+DY V + S+IF+     P N  N L+GHR Y   + TI+P+   L  +F+ +     
Sbjct: 377 SAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIAREKGKR 436

Query: 435 SEFQQAV--VEGHENRQGQIRIRKPKQSIYTYPAPDCMCH 472
           + F++AV  V    N  G  +   P +S YT   P+C C 
Sbjct: 437 AGFEEAVRRVMLKTNFGGPHKRVSP-ESFYTNSWPECFCQ 475


>sp|Q39QK2|HISZ_GEOMG ATP phosphoribosyltransferase regulatory subunit OS=Geobacter
           metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
           GN=hisZ PE=3 SV=1
          Length = 434

 Score = 33.5 bits (75), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 19/131 (14%)

Query: 101 QDSSSFMDIYDVDHFINVLKDDISIVKELPNEFSWSTREYYATAIRATRIKTAPVHASAN 160
           +DSS+   I + +   + +K++++ +  L     +  RE  A    A R+ T+     A 
Sbjct: 196 KDSSAVRAILETEPVADRIKEELAALPRL-----FGGREVLA---EAARVATSDSSRRAL 247

Query: 161 WYLENVLPVLQSYGVAAISPFSHRLTFDNLPMDIQRLRCKANFQALIFVPHIRALGDALV 220
             +  VL +L  +GV+           D+L +D+  +R       L F   +  +G+A+ 
Sbjct: 248 DNIAQVLDILDIHGVS-----------DHLTLDLGEIRGLDYHSGLTFEGFVTGIGEAVC 296

Query: 221 SRLRYPSIKNR 231
           S  RY ++  R
Sbjct: 297 SGGRYDNLTQR 307


>sp|Q15UM1|SYM_PSEA6 Methionine--tRNA ligase OS=Pseudoalteromonas atlantica (strain T6c
           / ATCC BAA-1087) GN=metG PE=3 SV=1
          Length = 675

 Score = 32.3 bits (72), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 413 LKTIKPNMALLGQLFLNKSLSWSEFQQAVVEGHE 446
           LK + P +A   + FLN  LSWS   Q+V+ GHE
Sbjct: 490 LKPVVPKLAEQAEAFLNDDLSWSS-AQSVLTGHE 522


>sp|Q185C5|EAM_CLOD6 Glutamate 2,3-aminomutase OS=Clostridium difficile (strain 630)
           GN=eam PE=1 SV=1
          Length = 422

 Score = 32.3 bits (72), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 97  NPVWQDSSSFMDIYDVDHFINVLKDDISIVKELPNEFSWSTREYYATAI------RATRI 150
           N  WQ S+   D+  +   I + K +   +KE+  +F W+   YY + I         ++
Sbjct: 59  NYKWQLSNRITDVDTLSKIITLTKKEKEYIKEVGTQFRWAISPYYLSLIDPEDICDPIKL 118

Query: 151 KTAPVHASANWYLENVLPVLQSY 173
            + P H       E++ P+ + Y
Sbjct: 119 LSIPTHIELEDEQEDLDPMGEEY 141


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,317,073
Number of Sequences: 539616
Number of extensions: 7036941
Number of successful extensions: 14521
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14513
Number of HSP's gapped (non-prelim): 5
length of query: 473
length of database: 191,569,459
effective HSP length: 121
effective length of query: 352
effective length of database: 126,275,923
effective search space: 44449124896
effective search space used: 44449124896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)