Query 012011
Match_columns 473
No_of_seqs 179 out of 400
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 19:51:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 3E-14 1E-18 147.0 17.6 294 53-412 18-380 (408)
2 3zy2_A Putative GDP-fucose pro 99.4 2.1E-12 7.2E-17 131.4 13.4 279 55-412 6-348 (362)
3 2hhc_A NODZ, nodulation fucosy 97.6 0.0014 4.8E-08 65.0 16.1 52 56-110 3-54 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 97.6 0.0048 1.6E-07 66.2 20.9 252 56-409 144-418 (526)
5 1wgl_A TOLL-interacting protei 48.2 7.2 0.00025 29.9 1.6 49 343-396 10-58 (59)
6 1l2m_A REP protein; A+B fold, 26.5 68 0.0023 27.8 4.4 29 309-338 17-45 (118)
7 3l32_A Phosphoprotein; antipar 22.4 40 0.0014 24.6 1.7 21 205-225 2-22 (45)
8 2dhy_A CUE domain-containing p 19.9 21 0.00072 28.0 -0.1 42 343-389 19-60 (67)
9 2nyg_A YOKD protein; PFAM02522 18.7 1.1E+02 0.0039 29.7 4.8 39 55-97 28-74 (273)
10 2lqt_A Coiled-coil-helix-coile 18.1 1E+02 0.0034 25.4 3.5 38 281-325 40-81 (85)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.58 E-value=3e-14 Score=146.97 Aligned_cols=294 Identities=18% Similarity=0.233 Sum_probs=163.1
Q ss_pred CCCCCcEEEEEe-cC-ChhhHHHHHHHHHHHHHHhcCe----EeccccCCCCcccCC------CCCCcccchHHHHHhcc
Q 012011 53 PQKSQGYIQVFL-DG-GLNQQRMGICDAVAVTKILNAT----LVIPYLEVNPVWQDS------SSFMDIYDVDHFINVLK 120 (473)
Q Consensus 53 ~~~snGyl~V~~-nG-GLnqqR~~IcdaV~vAriLNAT----LViP~l~~~s~w~D~------S~F~dIFD~dhFI~~L~ 120 (473)
+...++||+-.. .| |.|+||...-.|.++|+.||.| ||||-...---|+-. -.|++.||++++-
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~---- 93 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN---- 93 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----
Confidence 346789999875 55 8999999999999999999999 999965432224432 2799999998753
Q ss_pred CCceEeccCChhhhhhh--------------hhhhhhcc--cc----cccccCCC-------cCChhHHH----------
Q 012011 121 DDISIVKELPNEFSWST--------------REYYATAI--RA----TRIKTAPV-------HASANWYL---------- 163 (473)
Q Consensus 121 ~dV~Ivk~LP~~~~~~~--------------~~~~~~~~--~~----~~i~~~p~-------~~~~~~Y~---------- 163 (473)
..|+|+.. +++.... .+.+.++. .. .+....+. .-++.|-.
T Consensus 94 ~~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c 171 (408)
T 4ap5_A 94 KNIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSC 171 (408)
T ss_dssp TTSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEE
T ss_pred hhCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCcee
Confidence 44555531 1111000 00000000 00 00000000 00111111
Q ss_pred -------Hhhhhhhhhc---ceEEEcCCCCcccCCCCC-chhhhhcceecceeeeccHhHHHHHHHHHHHHcCCCCCCCC
Q 012011 164 -------ENVLPVLQSY---GVAAISPFSHRLTFDNLP-MDIQRLRCKANFQALIFVPHIRALGDALVSRLRYPSIKNRG 232 (473)
Q Consensus 164 -------~~vlP~l~k~---~Vi~l~~~~~rL~~~~lP-~~iQrLRCrvnf~ALrF~~~I~~lg~~lv~Rmr~~~~~~~~ 232 (473)
..+-|.+.+. .-+-+..+...|. +... .+...+ -..|+|.+.|.+.|++.++..-... ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~-~~~~~~~~~~~-----~r~l~~s~~l~~~a~~fi~~~L~~~-~~-- 242 (408)
T 4ap5_A 172 LSVQGSASIVAPLLLRNTSARSVMLDRAENLLH-DHYGGKEYWDT-----RRSMVFARHLREVGDEFRSRHLNST-DD-- 242 (408)
T ss_dssp EEECSBGGGGHHHHHHCTTCSEEEEESGGGSBC-SSTTSHHHHHH-----HHTCCBCHHHHHHHHHHHHHHHCCC-TT--
T ss_pred EEEeecchhhhhhhhhcCChhhhhhhhcccCCc-cccchHhhhhH-----HHHhhhhHHHHHHHHHHHHHHhCcc-cc--
Confidence 1122333222 1122222333333 1111 122222 1479999999999999888654311 00
Q ss_pred Ccchhhhh------hhhccccCCCCceEEEeeccchhhHhhhccCCCCChHHHHHHHHHHHhhhcccccCCCCChHHHhc
Q 012011 233 LDDVHLEE------TAYTNKIQEPLKFVVLHLRFDKDMAAHSACDFGGGKAEKLALAKYRQMIWQGRVLNSQFTDEELRS 306 (473)
Q Consensus 233 ~~~~~~~~------~~~~~~~~~~g~yiAlHLR~E~Dmla~sgC~~~~~~~E~~eL~~~R~~~w~~~~~~~~~~~~~~R~ 306 (473)
..++.. +-........|+|+|+|+|-+.=+..+..|.
T Consensus 243 --~~h~r~~~dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~----------------------------------- 285 (408)
T 4ap5_A 243 --ADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDV----------------------------------- 285 (408)
T ss_dssp --TTTCCCCSSGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSS-----------------------------------
T ss_pred --eeecccchhHhhhhcccccccCCCccccccccccchhhhhccC-----------------------------------
Confidence 001100 0001122345789999999862222222232
Q ss_pred CCCCCCCH---HHHHHHHHHcCCCCCceEEEeeccccCCccchhHHHHhCCCCcccccCCChHHHhccccchhhhhhhhh
Q 012011 307 QGRCPLTP---EEIGLLLAALGFDKSTRLYLASHKVYGGEARISALRRLFPLMEDKKSLASSEERAGVKGKASLLAALDY 383 (473)
Q Consensus 307 ~G~CPLtP---eEvgl~L~alGf~~~T~IYlA~geiygg~~~l~~L~~~fPnl~tKe~L~s~eEL~~f~~~ss~lAAlDy 383 (473)
|-.+ +++..+++.. +-+.||||+-+. +..+..|++.+|.++.-.. ..+++..+. ..++|.||-
T Consensus 286 ----ps~~~~~~~i~~~~~~~---~~~~VyiATD~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~~--d~~~a~idq 351 (408)
T 4ap5_A 286 ----PSLEGAVRKIRSLMKTH---RLDKVFVATDAV---RKEYEELKKLLPEMVRFEP--TWEELELYK--DGGVAIIDQ 351 (408)
T ss_dssp ----CCHHHHHHHHHHHHHHH---TCSCEEEEECCC---HHHHHHHHHHCTTEECCCC--CHHHHHHHH--HHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHhc---CCCEEEEeCCCc---hhHHHHHHHhCCCcEEecC--cchhhhccC--cchhhHHHH
Confidence 2221 2222233333 344799998642 4457889999998654322 345555553 236799999
Q ss_pred eeecccceeeeCCCCchhhhhhhhhcccc
Q 012011 384 YVSMHSNIFISASPGNMHNALMGHRTYEN 412 (473)
Q Consensus 384 ~Vcl~SDvFv~t~~Gnfa~~v~GhR~y~g 412 (473)
+||.+||+||||..++|+..|.-.|.+.|
T Consensus 352 ~Ic~~a~~FiGt~~StfS~~I~~eR~~~G 380 (408)
T 4ap5_A 352 WICAHARFFIGTSVSTFSFRIHEEREILG 380 (408)
T ss_dssp HHHHTEEEEEBCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhCCeeEeCCcCchhHHHHHHHHhcC
Confidence 99999999999999999999999999999
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.39 E-value=2.1e-12 Score=131.45 Aligned_cols=279 Identities=18% Similarity=0.205 Sum_probs=160.6
Q ss_pred CCCcEEEE-EecCChhhHHHHHHHHHHHHHHhcCeEeccccCCCCcccCC--CCCCcccchHHHHHhccCCceEeccCCh
Q 012011 55 KSQGYIQV-FLDGGLNQQRMGICDAVAVTKILNATLVIPYLEVNPVWQDS--SSFMDIYDVDHFINVLKDDISIVKELPN 131 (473)
Q Consensus 55 ~snGyl~V-~~nGGLnqqR~~IcdaV~vAriLNATLViP~l~~~s~w~D~--S~F~dIFD~dhFI~~L~~dV~Ivk~LP~ 131 (473)
.+||||+- .|-|-+.||-....-+.+.|+.||.|||||-+-.-.. ..+ -.|++.|+++. |+..-|||.- +
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~~~~vpf~~yF~v~~----l~~yhrvi~m--e 78 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PETKMIPFEFLFQVGT----VAKYTRVVTM--Q 78 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SSCEEECHHHHBCHHH----HTTTSCEECH--H
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Ccccccchhheeecch----hhhhceeeeH--H
Confidence 47999988 6999999999999999999999999999987642221 111 25888888865 4444455432 1
Q ss_pred hhhhh---------hhhhh---------hhccccccccc----------------------CC----CcCChhHHHHhhh
Q 012011 132 EFSWS---------TREYY---------ATAIRATRIKT----------------------AP----VHASANWYLENVL 167 (473)
Q Consensus 132 ~~~~~---------~~~~~---------~~~~~~~~i~~----------------------~p----~~~~~~~Y~~~vl 167 (473)
+++.. .+..| .+.-...+-.+ .| .+-+...|.++=.
T Consensus 79 ~Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~ 158 (362)
T 3zy2_A 79 EFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWL 158 (362)
T ss_dssp HHHHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHH
T ss_pred HHHHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHH
Confidence 11100 00000 00000000000 00 0000000111000
Q ss_pred hh--hhhcceEEEcCCCCcccCCCCC--chhhhhcceecceeeeccHhHHHHHHHHHHHHcCCCCCCCCCcchhhhhhhh
Q 012011 168 PV--LQSYGVAAISPFSHRLTFDNLP--MDIQRLRCKANFQALIFVPHIRALGDALVSRLRYPSIKNRGLDDVHLEETAY 243 (473)
Q Consensus 168 P~--l~k~~Vi~l~~~~~rL~~~~lP--~~iQrLRCrvnf~ALrF~~~I~~lg~~lv~Rmr~~~~~~~~~~~~~~~~~~~ 243 (473)
.. -.+|-|+.|++.-. ++-..+ -.||| -|+++++|.+.|++.|+.--.
T Consensus 159 ~~~p~~~~pVlAf~gaPa--~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~------------------ 210 (362)
T 3zy2_A 159 EKFPSEEYPVLAFSSAPA--PFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANLA------------------ 210 (362)
T ss_dssp HHSCTTTCSEEEESSCSS--CSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHCC------------------
T ss_pred HhCCcccCceEeecCCCC--CCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhcC------------------
Confidence 00 12456777765211 110011 13554 589999999999998887443
Q ss_pred ccccCCCCceEEEeeccchhhHhhhccCCC-CChHHHHHHHHHHHhhhcccccCCCCChH---HHhcCC-----CCCCCH
Q 012011 244 TNKIQEPLKFVVLHLRFDKDMAAHSACDFG-GGKAEKLALAKYRQMIWQGRVLNSQFTDE---ELRSQG-----RCPLTP 314 (473)
Q Consensus 244 ~~~~~~~g~yiAlHLR~E~Dmla~sgC~~~-~~~~E~~eL~~~R~~~w~~~~~~~~~~~~---~~R~~G-----~CPLtP 314 (473)
+||||+|||--.|+.-. |.+- .++ . .+--.+|. -+...| .|==+.
T Consensus 211 -------rpyVgIHLR~G~DW~~a--C~hlk~~~---------------~--~~lfaSPQC~Gy~~~~~~lt~emClPSl 264 (362)
T 3zy2_A 211 -------KPFVAVHLRNDADWVRV--CEHIDTTT---------------N--RPLFASEQCLGEGHHLGTLTKEICSPSK 264 (362)
T ss_dssp -------SSEEEEEECCCHHHHHH--HHTCCTTT---------------C--CCCTTTHHHHCGGGTTCCCCHHHHSCCH
T ss_pred -------CCeEEEEEecCCcHHHH--Hhhhcccc---------------C--cccccCCcccCCcccCcccchhccCCCH
Confidence 59999999999999877 8651 110 0 00000110 011112 232233
Q ss_pred HH----HHHHHHHcCCCCCceEEEeeccccCCccchhHHHHhCCCCcccccCCChHHHhccccchhhhhhhhheeecccc
Q 012011 315 EE----IGLLLAALGFDKSTRLYLASHKVYGGEARISALRRLFPLMEDKKSLASSEERAGVKGKASLLAALDYYVSMHSN 390 (473)
Q Consensus 315 eE----vgl~L~alGf~~~T~IYlA~geiygg~~~l~~L~~~fPnl~tKe~L~s~eEL~~f~~~ss~lAAlDy~Vcl~SD 390 (473)
++ |..+++.++ -..||||+-. ...+.-|++.|+.... .+.+ +.. -.|+||.+||.+||
T Consensus 265 e~I~rqIk~~vk~~~---lksVFIATDa----~~~~~ELk~~L~~~~v--~vv~------~~p---e~a~ID~~I~~~A~ 326 (362)
T 3zy2_A 265 QQILEQIVEKVGSIG---AKSVFVASDK----DHMIDEINEALKPYEI--EAHR------QEP---DDMYTSLAIMGRAD 326 (362)
T ss_dssp HHHHHHHHHHHHHHT---CSEEEEEESS----CCCHHHHHHHHGGGTC--CEEC------CSS---CCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcC---CcEEEEecCC----HHHHHHHHHHhhccCc--eEEE------eCC---chhHHHHHHHHhCC
Confidence 33 344555555 4489999965 3457888888864211 1111 111 17999999999999
Q ss_pred eeeeCCCCchhhhhhhhhcccc
Q 012011 391 IFISASPGNMHNALMGHRTYEN 412 (473)
Q Consensus 391 vFv~t~~Gnfa~~v~GhR~y~g 412 (473)
+||+|..++|...|.-.|--.|
T Consensus 327 ~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 327 LFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp EEEECTTCHHHHHHHHHHHHSS
T ss_pred EeecCccccccHHHHHHHHhcC
Confidence 9999999999999999998888
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.61 E-value=0.0014 Score=65.00 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=41.1
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHHHHHhcCeEeccccCCCCcccCCCCCCccc
Q 012011 56 SQGYIQVFLDGGLNQQRMGICDAVAVTKILNATLVIPYLEVNPVWQDSSSFMDIY 110 (473)
Q Consensus 56 snGyl~V~~nGGLnqqR~~IcdaV~vAriLNATLViP~l~~~s~w~D~S~F~dIF 110 (473)
+..||.+...|||.+|=-+++.|.++|...|.+|+|--.. ..|-. ..|.+.|
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f 54 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF 54 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC
Confidence 5679999999999999999999999999999998886443 22321 3466666
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.59 E-value=0.0048 Score=66.18 Aligned_cols=252 Identities=13% Similarity=0.097 Sum_probs=136.5
Q ss_pred CCcEEEEEe--cCChhhHHHHHHHHHHHHHHhcCeEeccccCCCCcccCC-CCCCcccchHHHHHhccCCceEeccCChh
Q 012011 56 SQGYIQVFL--DGGLNQQRMGICDAVAVTKILNATLVIPYLEVNPVWQDS-SSFMDIYDVDHFINVLKDDISIVKELPNE 132 (473)
Q Consensus 56 snGyl~V~~--nGGLnqqR~~IcdaV~vAriLNATLViP~l~~~s~w~D~-S~F~dIFD~dhFI~~L~~dV~Ivk~LP~~ 132 (473)
+..||+... ..|+..+-..++=|..+|-.+|.|||+-.=. |.-. ..|+++|.. +...+... |..
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~~-------~~~ 210 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTDR-------SGI 210 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCCC-------CCS
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccCC-------Ccc
Confidence 457888876 5799999999999999999999999994432 3322 467777764 11111111 000
Q ss_pred hhhhhhhhhhhcccccccccCCCcCChhHHHHhhhhhhhhcceEEEcCCC-----CcccCCCCCch----hhhhcce---
Q 012011 133 FSWSTREYYATAIRATRIKTAPVHASANWYLENVLPVLQSYGVAAISPFS-----HRLTFDNLPMD----IQRLRCK--- 200 (473)
Q Consensus 133 ~~~~~~~~~~~~~~~~~i~~~p~~~~~~~Y~~~vlP~l~k~~Vi~l~~~~-----~rL~~~~lP~~----iQrLRCr--- 200 (473)
- +..++.. .. -..+.||.+.-.+ ..+..-.+|.+ ++++.--
T Consensus 211 ~--------------------~~~w~~~-----~~--~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~ 263 (526)
T 2de0_X 211 S--------------------TGHWSGE-----VK--DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAV 263 (526)
T ss_dssp C--------------------CCBCCCT-----TG--GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHH
T ss_pred c--------------------cCCCCCc-----cc--CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHH
Confidence 0 0000000 00 0123344332111 11111134433 2333200
Q ss_pred -----ecceeeeccHhHHHHHHHHHHHHcCCCCCCCCCcchhhhhhhhccccCCCCceEEEeeccchhhHhhhccCCCCC
Q 012011 201 -----ANFQALIFVPHIRALGDALVSRLRYPSIKNRGLDDVHLEETAYTNKIQEPLKFVVLHLRFDKDMAAHSACDFGGG 275 (473)
Q Consensus 201 -----vnf~ALrF~~~I~~lg~~lv~Rmr~~~~~~~~~~~~~~~~~~~~~~~~~~g~yiAlHLR~E~Dmla~sgC~~~~~ 275 (473)
+.-..+|+.++|++..+++.+.+.- +++.|+||.|-- |-++... .+..-
T Consensus 264 w~~~q~~~yl~rP~~~i~~~I~~~~~~l~~------------------------~~piVGVHIRrG-Dk~~~E~-~~~~~ 317 (526)
T 2de0_X 264 WWVSQFVKYLIRPQPWLEKEIEEATKKLGF------------------------KHPVIGVHVRRT-DKVGTEA-AFHPI 317 (526)
T ss_dssp HHHHHHHHHHTCBCHHHHHHHHHHHHHHTC------------------------CSSEEEEEECCC------CC-CSCSH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------------------CCCEEEEEEeCC-CCCcccc-ccCCH
Confidence 0012478899999888888777643 368999999964 4432110 00000
Q ss_pred hHHHHHHHHHHHhhhcccccCCCCChHHHhcCCCCCCCHHHHHHHHHHcCCCCCceEEEeeccccCCccchhHHHHhCCC
Q 012011 276 KAEKLALAKYRQMIWQGRVLNSQFTDEELRSQGRCPLTPEEIGLLLAALGFDKSTRLYLASHKVYGGEARISALRRLFPL 355 (473)
Q Consensus 276 ~~E~~eL~~~R~~~w~~~~~~~~~~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiygg~~~l~~L~~~fPn 355 (473)
++... ... .| -..|+.......+.||||+-+ ...++-+++.||+
T Consensus 318 ~~Y~~---~v~--~~---------------------------~~~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~ 361 (526)
T 2de0_X 318 EEYMV---HVE--EH---------------------------FQLLARRMQVDKKRVYLATDD----PSLLKEAKTKYPN 361 (526)
T ss_dssp HHHHH---HHH--HH---------------------------HHHHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTT
T ss_pred HHHHH---HHH--HH---------------------------HHHHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCC
Confidence 11111 010 01 011233346778899999988 5667888889998
Q ss_pred C--cccccCC-ChHHHhccccchhhhhhhhheeecccceeeeCCCCchhhhhhhhhc
Q 012011 356 M--EDKKSLA-SSEERAGVKGKASLLAALDYYVSMHSNIFISASPGNMHNALMGHRT 409 (473)
Q Consensus 356 l--~tKe~L~-s~eEL~~f~~~ss~lAAlDy~Vcl~SDvFv~t~~Gnfa~~v~GhR~ 409 (473)
. ++-.... +...-..+...+-..+.+|.++..++|+||+|.++||++.+...|.
T Consensus 362 ~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~Vgt~sS~~srla~~l~~ 418 (526)
T 2de0_X 362 YEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIMQ 418 (526)
T ss_dssp SEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEEEECTTSHHHHHHHHHHT
T ss_pred CEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCeeecCCCCHHHHHHHHHhc
Confidence 5 2221111 1111111211122458899999999999999999999998886553
No 5
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=48.20 E-value=7.2 Score=29.85 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=33.0
Q ss_pred ccchhHHHHhCCCCcccccCCChHHHhccccchhhhhhhhheeecccceeeeCC
Q 012011 343 EARISALRRLFPLMEDKKSLASSEERAGVKGKASLLAALDYYVSMHSNIFISAS 396 (473)
Q Consensus 343 ~~~l~~L~~~fPnl~tKe~L~s~eEL~~f~~~ss~lAAlDy~Vcl~SDvFv~t~ 396 (473)
+..++-|++|||++ +++.+- .=|..-.+ +..+|||-+..+..+-|=|++
T Consensus 10 ee~l~~L~emFP~l-d~~~I~--~vL~a~~g--dvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQEVIR--SVLEAQRG--NKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHH--HHHTTTTT--CHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-CHHHHH--HHHHHcCC--CHHHHHHHHHcCcCCCCCCCC
Confidence 56689999999997 443331 22322222 377999999988887776654
No 6
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=26.54 E-value=68 Score=27.80 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEeecc
Q 012011 309 RCPLTPEEIGLLLAALGFDKSTRLYLASHK 338 (473)
Q Consensus 309 ~CPLtPeEvgl~L~alGf~~~T~IYlA~ge 338 (473)
.|||++||+...|+.|--+. ...||....
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~-~~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPT-NKLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSS-CEEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCc-ceeeeeehh
Confidence 79999999999999987554 366666554
No 7
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=22.42 E-value=40 Score=24.60 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.4
Q ss_pred eeeccHhHHHHHHHHHHHHcC
Q 012011 205 ALIFVPHIRALGDALVSRLRY 225 (473)
Q Consensus 205 ALrF~~~I~~lg~~lv~Rmr~ 225 (473)
++-|+.-+.++|.++|+||++
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHc
Confidence 355788899999999999998
No 8
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=19.93 E-value=21 Score=28.02 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=25.9
Q ss_pred ccchhHHHHhCCCCcccccCCChHHHhccccchhhhhhhhheeeccc
Q 012011 343 EARISALRRLFPLMEDKKSLASSEERAGVKGKASLLAALDYYVSMHS 389 (473)
Q Consensus 343 ~~~l~~L~~~fPnl~tKe~L~s~eEL~~f~~~ss~lAAlDy~Vcl~S 389 (473)
+..++-|++|||++ +++.|- .-|..-.++ ..+|||-+..+..
T Consensus 19 ~~~v~~L~~MFP~l-D~~vI~--~vL~a~~G~--vd~aId~LL~ms~ 60 (67)
T 2dhy_A 19 NQAMDDFKTMFPNM-DYDIIE--CVLRANSGA--VDATIDQLLQMNL 60 (67)
T ss_dssp HHHHHHHHHHCSSS-CHHHHH--HHHHHHTSC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHH--HHHHHcCCC--HHHHHHHHHhcCC
Confidence 34578899999997 554442 233333333 6688887655443
No 9
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=18.69 E-value=1.1e+02 Score=29.73 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=21.8
Q ss_pred CCCcEEEEEec--------CChhhHHHHHHHHHHHHHHhcCeEeccccCCC
Q 012011 55 KSQGYIQVFLD--------GGLNQQRMGICDAVAVTKILNATLVIPYLEVN 97 (473)
Q Consensus 55 ~snGyl~V~~n--------GGLnqqR~~IcdaV~vAriLNATLViP~l~~~ 97 (473)
+...-|+|+++ ||..-.-.++-|+| =-+.|||||.+..+
T Consensus 28 ~~Gd~llVHsSl~~lG~v~gg~~~vi~AL~~~v----g~~GTLvmPtft~~ 74 (273)
T 2nyg_A 28 KKGMTVLVHSSLSSIGWVNGGAVAVIQALIDVV----TEEGTIVMPSQSVE 74 (273)
T ss_dssp CTTCEEEEEECSGGGCCBTTHHHHHHHHHHHHH----TTTSEEEEECCCTT
T ss_pred CCCCEEEEEechHHhCCCCCCHHHHHHHHHHHh----CCCCeEEEeccccc
Confidence 44557888764 56333222222222 12589999998654
No 10
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=18.12 E-value=1e+02 Score=25.40 Aligned_cols=38 Identities=29% Similarity=0.534 Sum_probs=28.5
Q ss_pred HHHHHHH--hhhcccccCCCCChHHHhcCCCCCC--CHHHHHHHHHHcC
Q 012011 281 ALAKYRQ--MIWQGRVLNSQFTDEELRSQGRCPL--TPEEIGLLLAALG 325 (473)
Q Consensus 281 eL~~~R~--~~w~~~~~~~~~~~~~~R~~G~CPL--tPeEvgl~L~alG 325 (473)
--.+||. +-|-..- .++|.+|.=|. ||+|-.-+|++||
T Consensus 40 yF~~Yk~CKk~W~~v~-------~eRRr~Gi~P~~P~~~eR~~I~~~~~ 81 (85)
T 2lqt_A 40 YFLRYKNCRRFWNSIV-------MQRRKNGVKPFMPTAAERDEILRAVG 81 (85)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHTTCCSCSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHCCCCCCCcCHHHHHHHHHHhc
Confidence 3456665 6675421 47899999998 5689999999998
Done!