Query 012011
Match_columns 473
No_of_seqs 179 out of 400
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 19:51:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012011.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012011hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ihoa2 d.3.1.18 (A:156-293) A 44.6 1.2 8.8E-05 37.1 -1.6 34 89-122 32-70 (138)
2 d1wgla_ a.5.2.4 (A:) Toll-inte 42.4 4 0.00029 29.7 1.2 49 343-396 10-58 (59)
3 d1l5ia_ d.89.1.4 (A:) DNA-bind 33.1 21 0.0015 29.1 4.3 29 309-338 17-45 (118)
4 d1oqya2 a.5.2.1 (A:317-360) DN 24.3 4.8 0.00035 27.7 -1.0 26 313-338 1-30 (44)
5 d1vjna_ d.157.1.4 (A:) Hypothe 20.3 76 0.0055 26.8 6.0 54 59-121 130-184 (209)
6 d2nyga1 c.140.1.2 (A:2-271) Un 17.9 52 0.0038 29.7 4.5 54 55-114 27-104 (270)
7 d1jjcb2 a.6.1.1 (B:400-474) Do 17.6 33 0.0024 25.1 2.4 24 303-327 12-35 (75)
8 d2g7ja1 d.198.5.1 (A:1-112) Pu 16.2 29 0.0021 27.5 1.8 18 312-329 3-20 (112)
9 d1mn3a_ a.5.2.4 (A:) Vacuolar 15.4 22 0.0016 25.1 0.9 37 343-384 13-49 (54)
10 d1zq1c2 d.74.4.1 (C:277-407) G 12.4 90 0.0065 24.8 4.1 30 310-339 81-110 (131)
No 1
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=44.58 E-value=1.2 Score=37.07 Aligned_cols=34 Identities=35% Similarity=0.633 Sum_probs=29.1
Q ss_pred EeccccCCCCcccCCC-----CCCcccchHHHHHhccCC
Q 012011 89 LVIPYLEVNPVWQDSS-----SFMDIYDVDHFINVLKDD 122 (473)
Q Consensus 89 LViP~l~~~s~w~D~S-----~F~dIFD~dhFI~~L~~d 122 (473)
||+|...-+++|+++- .=+.|||-|.|--..+.-
T Consensus 32 LVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaA 70 (138)
T d2ihoa2 32 LVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAA 70 (138)
T ss_dssp ECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHH
T ss_pred EEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHH
Confidence 8999999999999982 457899999998877654
No 2
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.37 E-value=4 Score=29.73 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=33.3
Q ss_pred ccchhHHHHhCCCCcccccCCChHHHhccccchhhhhhhhheeecccceeeeCC
Q 012011 343 EARISALRRLFPLMEDKKSLASSEERAGVKGKASLLAALDYYVSMHSNIFISAS 396 (473)
Q Consensus 343 ~~~l~~L~~~fPnl~tKe~L~s~eEL~~f~~~ss~lAAlDy~Vcl~SDvFv~t~ 396 (473)
+..+..|++|||++ +++.+- .=|.. +.-+..+|+|=+.-+.-+.|-|+.
T Consensus 10 Ee~i~~LkeMFP~~-D~~vI~--~VL~a--~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 10 EEDLKAIQDMFPNM-DQEVIR--SVLEA--QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHH--HHHTT--TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-CHHHHH--HHHHH--cCCCHHHHHHHHHhcCCCCcCCCC
Confidence 55689999999997 554442 22322 223477999988888777777654
No 3
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=33.15 E-value=21 Score=29.06 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEeecc
Q 012011 309 RCPLTPEEIGLLLAALGFDKSTRLYLASHK 338 (473)
Q Consensus 309 ~CPLtPeEvgl~L~alGf~~~T~IYlA~ge 338 (473)
+|||||||+...|+.|--+.+. .||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 6999999999999998665444 5666554
No 4
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.33 E-value=4.8 Score=27.67 Aligned_cols=26 Identities=46% Similarity=0.625 Sum_probs=18.5
Q ss_pred CHHHHH--HHHHHcCCCCCc--eEEEeecc
Q 012011 313 TPEEIG--LLLAALGFDKST--RLYLASHK 338 (473)
Q Consensus 313 tPeEvg--l~L~alGf~~~T--~IYlA~ge 338 (473)
||+|.. .=|.+|||+++. .+|+|..+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 455544 348899999987 46777765
No 5
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=20.32 E-value=76 Score=26.77 Aligned_cols=54 Identities=26% Similarity=0.512 Sum_probs=35.5
Q ss_pred EEEEEecCChhhHHHHHHHHHHHHHHhcCeEeccccCCCCcccC-CCCCCcccchHHHHHhccC
Q 012011 59 YIQVFLDGGLNQQRMGICDAVAVTKILNATLVIPYLEVNPVWQD-SSSFMDIYDVDHFINVLKD 121 (473)
Q Consensus 59 yl~V~~nGGLnqqR~~IcdaV~vAriLNATLViP~l~~~s~w~D-~S~F~dIFD~dhFI~~L~~ 121 (473)
.+++.+.|.. ...--+|+.+|+.|++-.|||-= |+. ...| ++=..|.|++.++.
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~H-----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPMH-----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEES-----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEec-----cCCccccc-CcCCHHHHHHHhhh
Confidence 4555554432 13456899999999999999962 332 2232 45557888888763
No 6
>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD {Bacillus subtilis [TaxId: 1423]}
Probab=17.95 E-value=52 Score=29.68 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=0.0
Q ss_pred CCCcEEEEEec--------CChhhHHHHHHHHHHHHHHhcCeEeccccCCCCcccCCCCCCc----------------cc
Q 012011 55 KSQGYIQVFLD--------GGLNQQRMGICDAVAVTKILNATLVIPYLEVNPVWQDSSSFMD----------------IY 110 (473)
Q Consensus 55 ~snGyl~V~~n--------GGLnqqR~~IcdaV~vAriLNATLViP~l~~~s~w~D~S~F~d----------------IF 110 (473)
+...-|+|+++ ||+..+-.++-+.|. -+.|||||.+..+. .|+..+.+ +|
T Consensus 27 ~kgd~v~vHssl~~lg~~~~~~~~~i~aL~~~vG----~~GTLvmPtft~~~--~~~~~~~~~~~~~~~~~~~r~~~p~F 100 (270)
T d2nyga1 27 KKGMTVLVHSSLSSIGWVNGGAVAVIQALIDVVT----EEGTIVMPSQSVEL--SDPKEWGNPPVPEEWWDIIRESMPAY 100 (270)
T ss_dssp CTTCEEEEEECSGGGCCBTTHHHHHHHHHHHHHT----TTSEEEEECCCTTS--SCGGGCCSSCCCGGGTTHHHHSCCCC
T ss_pred CCcCEEEEEcChHHhCCcCCCHHHHHHHHHHHhC----CCceEEEEecccCC--CChhhhcCCCCcHHHHHHHHhcCCCc
Q ss_pred chHH
Q 012011 111 DVDH 114 (473)
Q Consensus 111 D~dh 114 (473)
|.++
T Consensus 101 d~~~ 104 (270)
T d2nyga1 101 NSNY 104 (270)
T ss_dssp CTTT
T ss_pred Cccc
No 7
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=17.58 E-value=33 Score=25.07 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.6
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCCC
Q 012011 303 ELRSQGRCPLTPEEIGLLLAALGFD 327 (473)
Q Consensus 303 ~~R~~G~CPLtPeEvgl~L~alGf~ 327 (473)
-.+..|.. ++++|+..+|+.|||.
T Consensus 12 i~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 12 ANRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHHhCCC-CCHHHHHHHHHHcCCc
Confidence 34666776 9999999999999996
No 8
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=16.21 E-value=29 Score=27.48 Aligned_cols=18 Identities=33% Similarity=0.661 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHcCCCCC
Q 012011 312 LTPEEIGLLLAALGFDKS 329 (473)
Q Consensus 312 LtPeEvgl~L~alGf~~~ 329 (473)
|-|.||+.+|+..||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999744
No 9
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.36 E-value=22 Score=25.09 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=21.6
Q ss_pred ccchhHHHHhCCCCcccccCCChHHHhccccchhhhhhhhhe
Q 012011 343 EARISALRRLFPLMEDKKSLASSEERAGVKGKASLLAALDYY 384 (473)
Q Consensus 343 ~~~l~~L~~~fPnl~tKe~L~s~eEL~~f~~~ss~lAAlDy~ 384 (473)
+..+..|++|||++ +++-+- .=|.. +..+..+|||-.
T Consensus 13 ~e~~~~Lk~MFP~~-D~~VI~--~VL~a--~~G~vd~aidaL 49 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDM-DPSLIE--DVCIA--KKSRIEPCVDAL 49 (54)
T ss_dssp HHHHHHHHHHCTTS-CHHHHH--HHHSC--SSCSHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHH--HHHHH--cCCCHHHHHHHH
Confidence 34588999999997 444331 22322 233366777743
No 10
>d1zq1c2 d.74.4.1 (C:277-407) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=12.40 E-value=90 Score=24.78 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHcCCCCCceEEEeeccc
Q 012011 310 CPLTPEEIGLLLAALGFDKSTRLYLASHKV 339 (473)
Q Consensus 310 CPLtPeEvgl~L~alGf~~~T~IYlA~gei 339 (473)
..++++|+..+.+.||....-.|++++|+.
T Consensus 81 k~l~~e~~~~l~~~l~~~~GD~il~~Ag~~ 110 (131)
T d1zq1c2 81 YGISQEEVNKVIERLNLSEEDAFVLVAAEE 110 (131)
T ss_dssp TTBCHHHHHHHHHHTTCCSSCEEEEEEESH
T ss_pred cccCHHHHHHHHHHhCCCCCCEEEEEeCCH
Confidence 358999999999999999998888888883
Done!