Your job contains 1 sequence.
>012013
MSRYDSRSADPSSYRDRRSDSGFGGASSYGSSVRTSSSKRDYDGAESPRKLDLDGLTPFE
KNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFF
EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP
TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH
NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSESQKY
NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK
AGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA
NARFAKELITILEEAGQKVSPELAAMGRGAPPSSGHGGFRDRGRGYGGGRHWT
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012013
(473 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 812 1.4e-131 2
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 807 8.0e-127 2
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 783 2.7e-126 2
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 764 1.1e-116 2
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 736 2.3e-116 2
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 682 7.9e-112 2
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 682 7.9e-112 2
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 662 7.9e-106 2
WB|WBGene00010260 - symbol:F58E10.3 species:6239 "Caenorh... 604 2.2e-105 2
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 1030 5.3e-104 1
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 867 9.9e-87 1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 832 5.0e-83 1
UNIPROTKB|G3MYF0 - symbol:LOC100300937 "Uncharacterized p... 520 2.8e-80 2
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 525 7.4e-80 2
ZFIN|ZDB-GENE-080204-77 - symbol:ddx43 "DEAD (Asp-Glu-Ala... 519 2.0e-79 2
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"... 533 5.2e-79 2
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 791 1.1e-78 1
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 533 3.5e-78 2
UNIPROTKB|F1NVJ6 - symbol:DDX43 "Uncharacterized protein"... 508 3.6e-78 2
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 786 3.8e-78 1
FB|FBgn0036104 - symbol:CG6418 species:7227 "Drosophila m... 576 2.0e-77 2
UNIPROTKB|F1S0I6 - symbol:DDX43 "Uncharacterized protein"... 509 8.5e-77 2
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 533 5.8e-76 2
TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE... 424 9.6e-76 2
RGD|1308685 - symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box po... 494 1.7e-75 2
UNIPROTKB|A6QLB2 - symbol:DDX23 "Uncharacterized protein"... 494 1.7e-75 2
UNIPROTKB|E2RTL6 - symbol:DDX23 "Uncharacterized protein"... 494 1.7e-75 2
UNIPROTKB|Q9BUQ8 - symbol:DDX23 "Probable ATP-dependent R... 494 1.7e-75 2
UNIPROTKB|F1NQ09 - symbol:DDX43 "Uncharacterized protein"... 530 2.0e-75 2
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 759 2.7e-75 1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 759 2.7e-75 1
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 759 2.7e-75 1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 759 2.7e-75 1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 759 2.7e-75 1
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 759 2.7e-75 1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 759 2.7e-75 1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 759 2.7e-75 1
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 756 5.7e-75 1
UNIPROTKB|Q86TM3 - symbol:DDX53 "Probable ATP-dependent R... 512 6.7e-75 2
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 751 1.9e-74 1
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 738 4.6e-73 1
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 738 4.6e-73 1
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 737 5.9e-73 1
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 737 5.9e-73 1
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 737 5.9e-73 1
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 737 5.9e-73 1
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 737 5.9e-73 1
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 737 5.9e-73 1
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 737 5.9e-73 1
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 735 9.6e-73 1
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 730 3.2e-72 1
ZFIN|ZDB-GENE-030131-6215 - symbol:ddx23 "DEAD (Asp-Glu-A... 481 3.3e-72 2
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 725 1.1e-71 1
WB|WBGene00017162 - symbol:ddx-23 species:6239 "Caenorhab... 491 1.7e-71 2
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi... 423 1.1e-69 2
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi... 408 2.3e-69 2
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 415 4.3e-69 2
UNIPROTKB|D3IVZ2 - symbol:DDX3Y "Uncharacterized protein"... 412 1.5e-68 2
UNIPROTKB|F1RX16 - symbol:DDX3X "Uncharacterized protein"... 410 2.0e-68 2
UNIPROTKB|F1NIX1 - symbol:DDX3X "Uncharacterized protein"... 417 3.1e-68 2
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ... 423 4.8e-68 2
FB|FBgn0032690 - symbol:CG10333 species:7227 "Drosophila ... 483 5.0e-68 2
RGD|1309586 - symbol:RGD1309586 "similar to probable ATP-... 409 5.1e-68 2
MGI|MGI:91842 - symbol:D1Pas1 "DNA segment, Chr 1, Pasteu... 409 5.2e-68 2
UNIPROTKB|G5E631 - symbol:DDX3X "Uncharacterized protein"... 410 6.7e-68 2
UNIPROTKB|J9P0V9 - symbol:DDX3X "Uncharacterized protein"... 410 6.8e-68 2
UNIPROTKB|O00571 - symbol:DDX3X "ATP-dependent RNA helica... 410 6.8e-68 2
ZFIN|ZDB-GENE-030131-1565 - symbol:ddx3 "DEAD (Asp-Glu-Al... 304 1.0e-67 3
MGI|MGI:103064 - symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/Hi... 413 1.3e-67 2
RGD|1564771 - symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box po... 413 1.3e-67 2
UNIPROTKB|F1NIX2 - symbol:DDX3X "Uncharacterized protein"... 411 1.6e-67 2
UNIPROTKB|E2RRQ7 - symbol:DDX3X "Uncharacterized protein"... 410 2.2e-67 2
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 301 2.2e-67 3
UNIPROTKB|I3LDV0 - symbol:DDX3Y "Uncharacterized protein"... 412 1.0e-66 2
WB|WBGene00008119 - symbol:C46F11.4 species:6239 "Caenorh... 500 1.5e-66 2
SGD|S000003046 - symbol:DBP3 "RNA-Dependent ATPase, membe... 397 2.3e-66 2
UNIPROTKB|B4DXX7 - symbol:DDX3Y "Uncharacterized protein"... 404 1.2e-65 2
UNIPROTKB|O15523 - symbol:DDX3Y "ATP-dependent RNA helica... 404 1.2e-65 2
WB|WBGene00006888 - symbol:vbh-1 species:6239 "Caenorhabd... 429 2.6e-65 2
MGI|MGI:1349406 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) bo... 398 5.9e-65 2
SGD|S000005730 - symbol:DED1 "ATP-dependent DEAD (Asp-Glu... 400 6.8e-65 2
TAIR|locus:2057640 - symbol:AT2G33730 species:3702 "Arabi... 409 1.0e-64 2
UNIPROTKB|I3LNN1 - symbol:DDX23 "Uncharacterized protein"... 492 4.1e-64 2
RGD|2314437 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box po... 391 4.3e-64 2
CGD|CAL0005725 - symbol:PRP5 species:5476 "Candida albica... 473 6.5e-64 2
UNIPROTKB|Q5ADL0 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 473 6.5e-64 2
ASPGD|ASPL0000077157 - symbol:AN10557 species:162425 "Eme... 400 1.2e-63 2
POMBASE|SPCC1795.11 - symbol:sum3 "translation initiation... 375 2.0e-63 2
TAIR|locus:2074899 - symbol:AT3G09620 species:3702 "Arabi... 648 5.2e-63 1
CGD|CAL0005460 - symbol:DBP3 species:5476 "Candida albica... 388 7.0e-63 2
UNIPROTKB|D4ADV9 - symbol:Ddx4 "Probable ATP-dependent RN... 389 7.0e-63 2
CGD|CAL0004832 - symbol:orf19.7392 species:5476 "Candida ... 386 7.2e-63 2
UNIPROTKB|Q90ZF6 - symbol:olvas "VASA" species:8090 "Oryz... 396 2.4e-62 2
MGI|MGI:102670 - symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box ... 390 3.3e-62 2
FB|FBgn0263231 - symbol:bel "belle" species:7227 "Drosoph... 398 1.2e-61 2
DICTYBASE|DDB_G0293064 - symbol:DDB_G0293064 species:4468... 438 2.6e-61 2
RGD|1308793 - symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box pol... 389 2.6e-61 2
UNIPROTKB|Q64060 - symbol:Ddx4 "Probable ATP-dependent RN... 389 2.6e-61 2
DICTYBASE|DDB_G0281925 - symbol:DDB_G0281925 "DEAD/DEAH b... 444 4.2e-61 2
UNIPROTKB|E2RMU5 - symbol:DDX4 "Uncharacterized protein" ... 391 6.2e-61 2
WARNING: Descriptions of 858 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 812 (290.9 bits), Expect = 1.4e-131, Sum P(2) = 1.4e-131
Identities = 153/223 (68%), Positives = 178/223 (79%)
Query: 52 DLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVM 111
D++ L FEK+FY E P V S + V+G DVPKPV++F + GFP YVM
Sbjct: 78 DINALPKFEKHFYKEHPDVTNRSQAEVDKFRREHSMAVQGSDVPKPVETFDEAGFPRYVM 137
Query: 112 QEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171
E+ GF PT IQ+QGWPMAL GRD++GIAETGSGKTL Y LPAIVH+NAQP LAPGD
Sbjct: 138 DEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGD 197
Query: 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPG 231
GPIVL+LAPTRELAVQIQ E +KFG SS+I++TC+YGGVPKGPQ+RDL +GVE+ IATPG
Sbjct: 198 GPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPG 257
Query: 232 RLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
RLIDMLES TNLRRVTYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 258 RLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI 300
Score = 499 (180.7 bits), Expect = 1.4e-131, Sum P(2) = 1.4e-131
Identities = 94/180 (52%), Positives = 129/180 (71%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG----SRILIFMDTKKGCDQ 328
QV IGS DL ANH I Q V++VSES+K +++++ +E +MDG ++ILIF+ TK+ D+
Sbjct: 330 QVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRVADE 389
Query: 329 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 388
ITR LR DGWPALSIHGDK Q ERDWVL +FK GKSPIM ATDVA+RG+DV+++ +V+NY
Sbjct: 390 ITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNY 449
Query: 389 DFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMGR 448
D+P + EDY+H FFT N++ A++L+ +L+EA Q++ P LA M R
Sbjct: 450 DYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQARDLLGVLQEAKQEIDPRLAEMAR 509
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 807 (289.1 bits), Expect = 8.0e-127, Sum P(2) = 8.0e-127
Identities = 153/223 (68%), Positives = 179/223 (80%)
Query: 52 DLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVM 111
DL+ L FEKNFY E P VAA S +TV+G D+P P+ +F + GFPDYV+
Sbjct: 80 DLEQLPKFEKNFYSEHPDVAARSDRDIEQFRKENEMTVKGHDIPHPITTFDEAGFPDYVL 139
Query: 112 QEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171
QE+ GF +PTPIQ QGWPMAL GRD+IGIA TGSGKTL+Y LP+IVH+NAQP L GD
Sbjct: 140 QEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGD 199
Query: 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPG 231
GPIVLVLAPTRELAVQIQ E +KFG SS+I++TC+YGG PKGPQ+RDL +GVEI IATPG
Sbjct: 200 GPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPG 259
Query: 232 RLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
RLIDMLE+ TNL+RVTYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 260 RLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI 302
Score = 459 (166.6 bits), Expect = 8.0e-127, Sum P(2) = 8.0e-127
Identities = 90/178 (50%), Positives = 116/178 (65%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMD--GSRILIFMDTKKGCDQIT 330
QV IGS +L A+H I Q V+++ E K ++LVK LE ++ ++IL+F TK+ CD+IT
Sbjct: 332 QVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNKILVFASTKRTCDEIT 391
Query: 331 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 390
LR DGWPAL+IHGDK Q ERDWVL EF+ GK+ IM ATDVAARG+DVK + +VINYD
Sbjct: 392 TYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDM 451
Query: 391 PGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMGR 448
PG++EDYVH FFT N++ +L I+ EA Q V PEL R
Sbjct: 452 PGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREANQTVPPELQRFDR 509
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 783 (280.7 bits), Expect = 2.7e-126, Sum P(2) = 2.7e-126
Identities = 148/223 (66%), Positives = 176/223 (78%)
Query: 52 DLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVM 111
+LD L FEKNFY E+P VA S ITV+GRD PKP+ F + FP YVM
Sbjct: 49 NLDELPKFEKNFYQENPDVARRSAQEVEHYRRSKEITVKGRDGPKPIVKFHEANFPKYVM 108
Query: 112 QEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171
I+K + +PTPIQAQGWP+AL G+D++GIA+TGSGKTL+YLLPAIVH+N QPFL GD
Sbjct: 109 DVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLEHGD 168
Query: 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPG 231
GPI LVLAPTRELA Q+QQ + ++G +S+IKSTCIYGG PKGPQ+RDL++GVEI IATPG
Sbjct: 169 GPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIATPG 228
Query: 232 RLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
RLID LE+ TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 229 RLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 271
Score = 478 (173.3 bits), Expect = 2.7e-126, Sum P(2) = 2.7e-126
Identities = 88/185 (47%), Positives = 131/185 (70%)
Query: 264 EPQIKKILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMD 321
E +K+ + Q+ +G+ L ANH I Q VD+ ++ +K +KL++LLE+IM ++ +IF++
Sbjct: 293 EDFLKEYI-QINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVE 351
Query: 322 TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 381
TK+ CD +TR++R DGWPA+ IHGDK+Q ERDWVL+EFK GK+PI+ ATDVA+RGLDV+D
Sbjct: 352 TKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVED 411
Query: 382 VKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSP 441
VK+VIN+D+P + EDY+H FFT N + A +L+++L EA Q ++P
Sbjct: 412 VKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINP 471
Query: 442 ELAAM 446
+L M
Sbjct: 472 KLIQM 476
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 764 (274.0 bits), Expect = 1.1e-116, Sum P(2) = 1.1e-116
Identities = 149/233 (63%), Positives = 179/233 (76%)
Query: 42 YDGAESPRKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSF 101
+ A SP DL L FEKNFY+E P V+ + +TV+GR+VP P+ F
Sbjct: 327 FGSALSPISWDLSKLPRFEKNFYLEHPDVSKFTQEEIEKFRASFQMTVKGREVPPPIMQF 386
Query: 102 RDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHV 161
FP Y+M+EI AGF PTPIQ+Q WP+ALKGRD+IG+A+TGSGKTLA+LLP+IVH+
Sbjct: 387 TQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHI 446
Query: 162 NAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQK 221
NAQP L DGPIVLVLAPTRELA+QIQ+E+ KFG +S+I +TC+YGG K QV L+K
Sbjct: 447 NAQPVLREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKK 506
Query: 222 GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
GVEIVIATPGRLID+LES TNLRRVTYLVLDEADRMLDMGFEPQI+KI+SQ+
Sbjct: 507 GVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI 559
Score = 406 (148.0 bits), Expect = 1.1e-116, Sum P(2) = 1.1e-116
Identities = 76/172 (44%), Positives = 111/172 (64%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQ 332
QV IGS ++ ANH +RQ V++ + +K +++ L + ++++F +T+KG D + R
Sbjct: 589 QVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEKVIVFAETRKGVDDLQRV 648
Query: 333 LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG 392
L+ G+ ++ IHG+KSQ ERD+VLS+FK G PIM ATDVA+RGLD+KD+KYV+NYDFP
Sbjct: 649 LQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPN 708
Query: 393 SLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELA 444
++E Y+H T NAR A ELI +L EA QK+ EL+
Sbjct: 709 TIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVLTEAKQKIPIELS 760
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 736 (264.1 bits), Expect = 2.3e-116, Sum P(2) = 2.3e-116
Identities = 142/232 (61%), Positives = 174/232 (75%)
Query: 44 GAESPRKLDLD-GLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFR 102
GA P+ + + LTPF KNFY SV A + IT++G VP P F
Sbjct: 101 GAHLPKIVWSEVNLTPFRKNFYKPCDSVLARTVGETETFLTSNEITIKGDQVPTPSIEFE 160
Query: 103 DVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVN 162
+ GFPDYVM EI K GF +PT IQAQGWP+A+ GRDL+G+A+TGSGKTLAY+LPA+VH+N
Sbjct: 161 EGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHIN 220
Query: 163 AQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG 222
QP L GDGPI LVLAPTRELA QIQQ + +FG+++ +++TCI+GG PKG Q RDL++G
Sbjct: 221 NQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERG 280
Query: 223 VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
VEIVIATPGRLID LE T+L+R TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 281 VEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 332
Score = 431 (156.8 bits), Expect = 2.3e-116, Sum P(2) = 2.3e-116
Identities = 89/176 (50%), Positives = 115/176 (65%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQIT 330
QV IGS L ANH I Q VD+ E++K KL+KLL DI + ++ +IF++TKK D+IT
Sbjct: 362 QVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEIT 421
Query: 331 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 390
R + GW A +IHGDKSQ ERD+VLS F+ G+ I+ ATDVAARGLDV DVK+VINYD+
Sbjct: 422 RNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDY 481
Query: 391 PGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
P + EDYVH FT +NA A +LI +L EA Q ++P+L M
Sbjct: 482 PSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQVLREANQTINPKLMNM 537
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 682 (245.1 bits), Expect = 7.9e-112, Sum P(2) = 7.9e-112
Identities = 134/220 (60%), Positives = 162/220 (73%)
Query: 56 LTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITV-EGRDVPKPVKSFRDVGFPDYVMQEI 114
L PFEKNFY E ++ +S IT+ EG +VPKPV S +GFPDYV++ +
Sbjct: 69 LVPFEKNFYKEHEDISKLSTKEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSL 128
Query: 115 SKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174
PTPIQ QGWP+AL G+D+IG AETGSGKTLA++LPA VH+ AQP L GDGPI
Sbjct: 129 KNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKYGDGPI 188
Query: 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI 234
VLVLAPTRELA QI+QE KF SKI++TC YGGVPK Q+ L++GV I+IA PGRLI
Sbjct: 189 VLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLI 248
Query: 235 DMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
D+LE + TNL RVTYLVLDEAD+MLDMGFE QI+KI+ Q+
Sbjct: 249 DLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQI 288
Score = 442 (160.7 bits), Expect = 7.9e-112, Sum P(2) = 7.9e-112
Identities = 89/172 (51%), Positives = 113/172 (65%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITR 331
QV +GS L A +I+Q + ++ E +K L LL+ I D RI++F++TKK D IT+
Sbjct: 319 QVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNADFITK 378
Query: 332 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 391
LR+DG PAL IHGDK Q ER WVL+EFK GKSPIM ATDVA+RGLD+K+VKYVIN+DFP
Sbjct: 379 ALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFP 438
Query: 392 GSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
+EDYVH F TA R AK+L+ IL E+ Q V P+L
Sbjct: 439 NQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRESEQPVPPQL 490
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 682 (245.1 bits), Expect = 7.9e-112, Sum P(2) = 7.9e-112
Identities = 134/220 (60%), Positives = 162/220 (73%)
Query: 56 LTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITV-EGRDVPKPVKSFRDVGFPDYVMQEI 114
L PFEKNFY E ++ +S IT+ EG +VPKPV S +GFPDYV++ +
Sbjct: 69 LVPFEKNFYKEHEDISKLSTKEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSL 128
Query: 115 SKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174
PTPIQ QGWP+AL G+D+IG AETGSGKTLA++LPA VH+ AQP L GDGPI
Sbjct: 129 KNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKYGDGPI 188
Query: 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI 234
VLVLAPTRELA QI+QE KF SKI++TC YGGVPK Q+ L++GV I+IA PGRLI
Sbjct: 189 VLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLI 248
Query: 235 DMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
D+LE + TNL RVTYLVLDEAD+MLDMGFE QI+KI+ Q+
Sbjct: 249 DLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQI 288
Score = 442 (160.7 bits), Expect = 7.9e-112, Sum P(2) = 7.9e-112
Identities = 89/172 (51%), Positives = 113/172 (65%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITR 331
QV +GS L A +I+Q + ++ E +K L LL+ I D RI++F++TKK D IT+
Sbjct: 319 QVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNADFITK 378
Query: 332 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 391
LR+DG PAL IHGDK Q ER WVL+EFK GKSPIM ATDVA+RGLD+K+VKYVIN+DFP
Sbjct: 379 ALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFP 438
Query: 392 GSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
+EDYVH F TA R AK+L+ IL E+ Q V P+L
Sbjct: 439 NQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRESEQPVPPQL 490
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 662 (238.1 bits), Expect = 7.9e-106, Sum P(2) = 7.9e-106
Identities = 130/223 (58%), Positives = 161/223 (72%)
Query: 54 DGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQE 113
+ L PF K+FY P+ A S ITV G ++P PV SF + P +V++E
Sbjct: 192 ENLEPFLKDFYNIHPNTLAKSEQQVAEIRRELEITVSGNELPHPVVSFEESSLPAHVIEE 251
Query: 114 ISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 173
+ + GF +PT IQ+QGWP+AL GRDL+GIA+TGSGKTLAY+LPAIVH+ QP + G+GP
Sbjct: 252 MKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGEGP 311
Query: 174 IVLVLAPTRELAVQIQQESTKFGASSK--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPG 231
I LVLAPTRELA QIQ +G K I+ TCI+GG K PQ RDL +GVE++IATPG
Sbjct: 312 IALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPG 371
Query: 232 RLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
RLID LE+ NTNL+R TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 372 RLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 414
Score = 408 (148.7 bits), Expect = 7.9e-106, Sum P(2) = 7.9e-106
Identities = 89/188 (47%), Positives = 123/188 (65%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-------DGSRILIFMDTKKG 325
Q+ IGS +L ANH IRQ V+I +E +K +LV LL +I +G++I++F++TK
Sbjct: 444 QINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIK 503
Query: 326 CDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 385
+ I + +R +G+ A SIHGDK+Q ERD VL +F+ GKS I+ ATDVA+RGLDV+D++YV
Sbjct: 504 VEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYV 563
Query: 386 INYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAA 445
INYD+P S E+YVH FFT NA+ A+ELI++LEEAGQ S L
Sbjct: 564 INYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLEEAGQTPSQALLD 623
Query: 446 MGRGAPPS 453
+ R P S
Sbjct: 624 LARSMPSS 631
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 604 (217.7 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 119/236 (50%), Positives = 161/236 (68%)
Query: 43 DGAESPRKLDLD----GLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPV 98
+G+ R D+D LTP EK+FY E+ +V+ +T+EGR VP+PV
Sbjct: 70 NGSAGGRLRDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPV 129
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
F + P + E+ F +PT IQ+ WP+A+ GRD+I IA+TGSGKTLA++LPA+
Sbjct: 130 FEFNEAPLPGQI-HELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPAL 188
Query: 159 VHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
VH+ Q G+GP VLVL PTRELA Q+Q+ S F S +K TC++GG KGPQ RD
Sbjct: 189 VHITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARD 248
Query: 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L++GV+IV+ATPGRL+D L++ TN+++ +YLVLDEADRMLDMGFEPQIKKI+ Q+
Sbjct: 249 LERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQI 304
Score = 459 (166.6 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 92/173 (53%), Positives = 116/173 (67%)
Query: 276 IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGS--RILIFMDTKKGCDQITRQL 333
+GS +L ANH I Q VDI+ E K KL++LL IM+ + +IF++TK+ D++TR +
Sbjct: 337 VGSLELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAM 396
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
R DGWP L IHGDK+Q ERDWVL EFKAGK+PIM ATDVAARGLDV D+K+VINYD+P +
Sbjct: 397 RRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNN 456
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
EDYVH FFT NA AK+L+ +L+EA Q V L M
Sbjct: 457 SEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTVPQALRDM 509
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
Identities = 201/263 (76%), Positives = 227/263 (86%)
Query: 39 KRDYDGAESPRKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPV 98
K+D DG ESPRKLDLDGLTPFEKNFYVESP+VAAM+ ITVEG+D+PKPV
Sbjct: 39 KKDNDGNESPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPV 98
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
KSFRDVGFPDYV++E+ KAGF EPTPIQ+QGWPMA+KGRDLIGIAETGSGKTL+YLLPAI
Sbjct: 99 KSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI 158
Query: 159 VHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
VHVNAQP LA GDGPIVLVLAPTRELAVQIQQE++KFG+SSKIK+TCIYGGVPKGPQVRD
Sbjct: 159 VHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRD 218
Query: 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGS 278
LQKGVEIVIATPGRLIDM+ES+NTNLRRVTYLVLDEADRMLDMGF+PQI+KI+S +
Sbjct: 219 LQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDR 278
Query: 279 PDLKANHAIRQHVDIVSESQKYN 301
L + + V+ +S+ YN
Sbjct: 279 QTLYWSATWPKEVEQLSKKFLYN 301
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 159/244 (65%), Positives = 183/244 (75%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP----QI-KKILS 272
+L++ +V+ R++DM + +R++ + + + P Q+ KK L
Sbjct: 243 NLRRVTYLVLDEADRMLDM--GFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLY 300
Query: 273 ---QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI 329
+VIIGS DLKAN AIRQ VD++SESQKYNKLVKLLEDIMDGSRIL+F+DTKKGCDQI
Sbjct: 301 NPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQI 360
Query: 330 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD 389
TRQLRMDGWPALSIHGDKSQAERDWVLSEF++GKSPIMTATDVAARGLDVKDVKYVINYD
Sbjct: 361 TRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYD 420
Query: 390 FPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMGRG 449
FPGSLEDYVH FFT ANARFAKEL IL+EAGQKVSPELA+MGR
Sbjct: 421 FPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASMGRS 480
Query: 450 -APP 452
APP
Sbjct: 481 TAPP 484
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 167/236 (70%), Positives = 194/236 (82%)
Query: 39 KRDYDGAESPRKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPV 98
KR+ D P++ + L FEKNFYVESP+V AM+ I+VEGRDVPKP+
Sbjct: 106 KRELDSVSLPKQ-NFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPM 164
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
K F+D FPD +++ I+K GF EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA+
Sbjct: 165 KMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAL 224
Query: 159 VHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
VHV+AQP L DGPIVL+LAPTRELAVQIQ+ES KFG S ++STCIYGG PKGPQ+RD
Sbjct: 225 VHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRD 284
Query: 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L++GVEIVIATPGRLIDMLE +TNL+RVTYLVLDEADRMLDMGFEPQI+KI+SQ+
Sbjct: 285 LRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQI 340
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 120/244 (49%), Positives = 167/244 (68%)
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP-QIKKILSQ 273
Q +L++ +V+ R++DM +R++ + + +L P +++ + Q
Sbjct: 306 QHTNLKRVTYLVLDEADRMLDM--GFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQ 363
Query: 274 -------VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGC 326
IIGS DLKAN +I Q ++IV +KYN+L+ LL+ +MDGS+ILIF++TK+GC
Sbjct: 364 FLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGC 423
Query: 327 DQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 386
DQ+TRQLRMDGWPAL+IHGDK+Q+ERD VL+EFK+G+SPIMTATDVAARGLDVKD+K V+
Sbjct: 424 DQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVV 483
Query: 387 NYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
NYDFP +LEDY+H FFT NA+FA+EL+ IL+EAGQ V P L+A+
Sbjct: 484 NYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTLSAL 543
Query: 447 GRGA 450
R +
Sbjct: 544 VRSS 547
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 156/223 (69%), Positives = 184/223 (82%)
Query: 52 DLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVM 111
DLD L FEK+FY E P V A S +TV+GRDVP+PV++F + GFP YV+
Sbjct: 93 DLDTLPKFEKSFYKEHPDVTARSQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVL 152
Query: 112 QEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171
E+ GF +PT IQ+QGWPMAL GRD++GIAETGSGKTL+Y LPAIVH+NAQP LAPGD
Sbjct: 153 SEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGD 212
Query: 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPG 231
GPIVL+LAPTRELAVQIQ E +KFG SS+I++TC+YGGVPKGPQ+RDL +GVE+ IATPG
Sbjct: 213 GPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPG 272
Query: 232 RLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
RLIDMLE+ TNLRRVTYLVLDEADRMLDMGFEPQI+KI+SQ+
Sbjct: 273 RLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI 315
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 108/241 (44%), Positives = 153/241 (63%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILS---- 272
+L++ +V+ R++DM +R++ + D M + +++++ S
Sbjct: 284 NLRRVTYLVLDEADRMLDM--GFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLN 341
Query: 273 ---QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMD--GSRILIFMDTKKGCD 327
QV IGS DL ANH I Q V+++SE +K ++++K LE IM+ G++ L+F TK+ D
Sbjct: 342 NYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKHLEKIMENRGNKCLVFTGTKRIAD 401
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+ITR LR DGWPALSIHGDK Q ERDWVL+EFK GKSPIM ATDVA+RG+DV+D+ +VIN
Sbjct: 402 EITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVIN 461
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMG 447
YD+P + EDYVH FFT NA+ A++L+TIL EA Q++ P LA M
Sbjct: 462 YDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLVTILSEAKQQIDPRLAEMV 521
Query: 448 R 448
R
Sbjct: 522 R 522
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 520 (188.1 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
Identities = 111/229 (48%), Positives = 153/229 (66%)
Query: 56 LTPFEKNFYVESPSVAAMSXXXXXXXXXXXX------ITV-EGRDVPKPVKSFRDVGFPD 108
L P +KN Y+ES + ++S +T E R +PKP +F D F
Sbjct: 150 LPPIKKNLYIESKATHSLSEAQVEIWRKENFNIRCDDLTEGEKRPIPKPTCTFEDA-FQQ 208
Query: 109 Y--VMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF 166
Y +MQ I +AGF +PTPIQ+Q WP+ L+G DLIGIA+TG+GKTL+YL+P +H+++QP
Sbjct: 209 YPEIMQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHSQPV 268
Query: 167 LAPG-DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEI 225
+GP +LVL PTRELA+Q++ E +K+ +KS CIYGG + Q++D+ KGV+I
Sbjct: 269 SRKQRNGPGMLVLTPTRELALQVEAECSKY-LYKGLKSVCIYGGGNRKGQIQDVTKGVDI 327
Query: 226 VIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
+IATPGRL D+ ++ NLR +TYLVLDEAD+MLD+GFE QI KIL V
Sbjct: 328 IIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV 376
Score = 305 (112.4 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
Identities = 59/173 (34%), Positives = 100/173 (57%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V +G+ DL + ++Q++ + +E +K + + + L+ + ++++F+ K D ++ L
Sbjct: 407 VYVGTLDLVTVNTVKQNIIVTTEEEKRSLVKEFLQSLSPKDKVIVFVSRKLVADDLSSDL 466
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ G P S+HGD+ Q++RD L +F+ G+ I+ ATD+AARGLDV DV +V NY+FP +
Sbjct: 467 SIQGIPVQSLHGDREQSDRDQALEDFRTGRVKILIATDLAARGLDVSDVTHVYNYNFPRN 526
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
+E+YVH T + + A ELI IL+ A Q V P L +M
Sbjct: 527 IEEYVHRVGRTGRAGKIGESITLVTQDDWKIADELIKILQRANQIVPPSLRSM 579
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 525 (189.9 bits), Expect = 7.4e-80, Sum P(2) = 7.4e-80
Identities = 113/229 (49%), Positives = 151/229 (65%)
Query: 56 LTPFEKNFYVESPSVAAMSXXXXXX-XXXXXXITV------EGRDVPKPVKSFRDVG--F 106
L P +KNFY ES + +AMS IT E R +P P +F D +
Sbjct: 191 LPPIKKNFYKESTATSAMSKVEADSWRKENFNITWDDLKDGEKRPIPNPTCTFDDAFQCY 250
Query: 107 PDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF 166
P+ VM+ I KAGF +PTPIQ+Q WP+ L+G DLIG+A+TG+GKTL YL+P +H+ QP
Sbjct: 251 PE-VMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPS 309
Query: 167 L-APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEI 225
L + P +LVL PTRELA+Q++ E K+ ++S C+YGG + Q+ +L+KGV+I
Sbjct: 310 LKGQRNRPGMLVLTPTRELALQVEGECCKYSYKG-LRSVCVYGGGNRDEQIEELKKGVDI 368
Query: 226 VIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
+IATPGRL D+ S+ NL+ +TYLVLDEAD+MLDMGFEPQI KIL V
Sbjct: 369 IIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDV 417
Score = 296 (109.3 bits), Expect = 7.4e-80, Sum P(2) = 7.4e-80
Identities = 59/173 (34%), Positives = 97/173 (56%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V +G+ DL A +++Q++ + +E +K++ + L+ + ++++F+ K D ++ L
Sbjct: 448 VYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVSRKAVADHLSSDL 507
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ S+HGD+ Q +R+ L FK GK I+ ATD+A+RGLDV DV +V N+DFP +
Sbjct: 508 ILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRN 567
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
+E+YVH T + R A ELI ILE A Q + EL +M
Sbjct: 568 IEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILERANQSIPEELVSM 620
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 519 (187.8 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 116/231 (50%), Positives = 148/231 (64%)
Query: 56 LTPFEKNFYVESPSVAAMSXXXXXX-XXXXXXITVEG------RDVPKPVKSFRDVGFPD 108
L +KNFY+E+ SVAA S I V+ R +P PV +F + F
Sbjct: 227 LPVLKKNFYIEAKSVAARSAEEVKIWRKENNNIFVDDLKDGDKRTIPNPVCTFEEA-FAH 285
Query: 109 Y--VMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF 166
Y +M+ I + GF +PTPIQ+Q WP+ L G DLIGIA+TG+GKTLAYLLP +H++ QP
Sbjct: 286 YPGIMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPM 345
Query: 167 LAPGD---GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGV 223
P D GP +LVL PTRELA+QI+ E K+ KS CIYGG + Q++ + GV
Sbjct: 346 --PRDKRNGPGMLVLTPTRELALQIEAECNKYSYKG-FKSICIYGGGDRNAQIKVVTSGV 402
Query: 224 EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
+IVIATPGRL D+ + NLR +TYLVLDEADRMLDMGFEPQI KI+ +
Sbjct: 403 DIVIATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDI 453
Score = 298 (110.0 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 64/173 (36%), Positives = 96/173 (55%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V +G+ DL A + ++Q V V E +K + + + + ++LIF+ K D ++ L
Sbjct: 484 VYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHRMEPLDKVLIFVGKKLKADDLSSDL 543
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ G S+HGD+ Q +R+ L +FK G+ I+ ATD+A+RGLDV D+ +V NYDFP +
Sbjct: 544 CLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLASRGLDVHDITHVFNYDFPRN 603
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
+E+YVH T + R A ELITILE +GQ V EL M
Sbjct: 604 VEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELITILERSGQDVPEELVLM 656
Score = 38 (18.4 bits), Expect = 6.4e-27, Sum P(2) = 6.4e-27
Identities = 22/83 (26%), Positives = 32/83 (38%)
Query: 95 PKPVKSFRDVGFPDYVMQEISKAGF-FEPTPIQAQGWPMALKGRDL-IGIAETGSGKTLA 152
P PVKS+R +E S AG F Q W + RD + + +GK +
Sbjct: 25 PAPVKSWRPPSPRGARNRETSSAGAKFGGDGEQWVNW----RNRDSDFDVFDGAAGKNNS 80
Query: 153 YLLPAIVHVNAQPFLAPGDGPIV 175
Y I ++ + GD V
Sbjct: 81 YSRSRIGPTRSRGYADRGDSSSV 103
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 533 (192.7 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
Identities = 111/230 (48%), Positives = 153/230 (66%)
Query: 55 GLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITV-------EGRDVPKPVKSFRDVG-- 105
GL P +KNFY+ES ++MS + E R +P P +F D
Sbjct: 189 GLPPVKKNFYIESEKTSSMSQEQVDNWRKENYNIICDDLKDGEKRPLPNPTCNFEDAFHC 248
Query: 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 165
+P+ VM+ I KAGF +PTPIQ+Q WP+ L+G DLIG+A+TG+GKTL+YL+P +H+++QP
Sbjct: 249 YPE-VMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQP 307
Query: 166 FLAPG-DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVE 224
L +GP +LVL PTRELA+Q+ E +++ +KS CIYGG + Q++DL KG +
Sbjct: 308 VLQRARNGPGMLVLTPTRELALQVDAECSEYSYRG-LKSVCIYGGGDRDGQIKDLSKGAD 366
Query: 225 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
I+IATPGRL D+ ++ L+ +TYLVLDEAD+MLDMGFEPQI KIL V
Sbjct: 367 IIIATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDV 416
Score = 280 (103.6 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
Identities = 58/173 (33%), Positives = 95/173 (54%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V +G+ DL A + Q++ + +E +K + + ++ + +++IF+ K D ++ L
Sbjct: 447 VYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFIDSMSPKDKVIIFVSRKAVADHLSSDL 506
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ S+HG++ Q++R+ L FK GK I+ ATD+A+RGLDV DV +V NYDFP +
Sbjct: 507 GIRRISVESLHGNREQSDRERALKSFKTGKVRILIATDLASRGLDVHDVTHVYNYDFPRN 566
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
+E+YVH T + + A ELI ILE A Q V +L +M
Sbjct: 567 IEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELINILERANQSVPEDLVSM 619
Score = 40 (19.1 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 282 KANHAIRQHVDIVSESQKY--NKLVKLLED 309
+AN ++ + D+VS +++Y NKL K E+
Sbjct: 607 RANQSVPE--DLVSMAERYKANKLKKETEN 634
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
Identities = 147/219 (67%), Positives = 178/219 (81%)
Query: 56 LTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEIS 115
L PF+K+FY E +V S I V G +VPKPV +F + GFP+YV++E+
Sbjct: 79 LIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVK 138
Query: 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175
+ GF PTPIQ Q WPMA+ GRD++GI+ TGSGKTL+Y LPAIVH+NAQP L+PGDGPIV
Sbjct: 139 QLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIV 198
Query: 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID 235
LVLAPTRELAVQIQQE TKFG SS+I++TC+YGGVP+GPQ+RDL +GVEI IATPGRL+D
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLD 258
Query: 236 MLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
ML+S+ TNLRRVTYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 259 MLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI 297
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 99/241 (41%), Positives = 148/241 (61%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILS---- 272
+L++ +V+ R++DM +R++ + D M + +++++
Sbjct: 266 NLRRVTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLN 323
Query: 273 ---QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCD 327
QV +GS DL A+H I+Q V++V + K +L K +E+++ +++LIF TK+ D
Sbjct: 324 DYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVAD 383
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
ITR LR DGWPAL+IHGDK+Q ERDWVL+EF+ GKSPIM ATDVA+RG+DVK + +V N
Sbjct: 384 DITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFN 443
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMG 447
YDFPG+ EDYVH +FT+ NA+ A+EL++IL EA Q + P+L M
Sbjct: 444 YDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503
Query: 448 R 448
R
Sbjct: 504 R 504
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 533 (192.7 bits), Expect = 3.5e-78, Sum P(2) = 3.5e-78
Identities = 113/247 (45%), Positives = 155/247 (62%)
Query: 41 DYDGAESP-----RKLD----LDGLT----PFEKNFYVESPSVAAMSXXXXXXXXXXXXI 87
DYD ++P RK++ LD + P K+FY E S++ M+ I
Sbjct: 157 DYDSDDNPIVVDKRKIEPITALDHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGI 216
Query: 88 TVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGS 147
V G DV +PVK+F D GF +M I K + +PT IQ Q P+ L GRD+IGIA+TGS
Sbjct: 217 RVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGS 276
Query: 148 GKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIY 207
GKT A++LP IVH+ QP L +GPI ++ APTRELA QI E+ KF + ++ + +Y
Sbjct: 277 GKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVY 336
Query: 208 GGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQI 267
GG+ K Q ++L+ G EIV+ATPGRLIDML+ + R +YLVLDEADRM D+GFEPQ+
Sbjct: 337 GGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQV 396
Query: 268 KKILSQV 274
+ I+ Q+
Sbjct: 397 RSIVGQI 403
Score = 273 (101.2 bits), Expect = 3.5e-78, Sum P(2) = 3.5e-78
Identities = 67/185 (36%), Positives = 101/185 (54%)
Query: 264 EPQIKKILS---QVIIGSPDLKANHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSRILIF 319
E ++ILS +V +G + AN I Q V+++ S+++K L++ L ++D +L+F
Sbjct: 421 EKLAREILSDPIRVTVGEVGM-ANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVF 479
Query: 320 MDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 379
K D+I QL ++ + ++HGDK QA R L +FK+G ++ ATDVAARGLD+
Sbjct: 480 ASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDI 539
Query: 380 KDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXX-XFFTAANARFAKELITILEEAGQK 438
K +K V+NYD ++ +VH T ARFA EL+ L AGQ
Sbjct: 540 KSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQN 599
Query: 439 VSPEL 443
V PEL
Sbjct: 600 VPPEL 604
Score = 39 (18.8 bits), Expect = 1.5e-53, Sum P(2) = 1.5e-53
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 251 VLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSESQKY 300
++DE D ++ + + +I +Q+ + S + A H + + QK+
Sbjct: 470 MIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKF 519
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 508 (183.9 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
Identities = 118/231 (51%), Positives = 147/231 (63%)
Query: 56 LTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITV-----EG--RDVPKPVKSFRDV--GF 106
L P EKNFY ES A MS + EG R +P PV F DV +
Sbjct: 189 LPPIEKNFYKESSRTACMSPEEVELWRKENNNIICDDLKEGEKRCIPNPVCKFEDVFEQY 248
Query: 107 PDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF 166
PD +M I K GF +PTPIQ+Q WP+ L+G DLIGIA+TG+GKTLAYL+P +H+ +QP
Sbjct: 249 PD-IMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPI 307
Query: 167 LAPGD---GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGV 223
P D GP +LVLAPTRELA+Q++ E K+ KS CIYGG + Q+ + KGV
Sbjct: 308 --PKDKRGGPGMLVLAPTRELALQVEAECLKYTYKG-FKSICIYGGGDRKAQINVVTKGV 364
Query: 224 EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
+IVIATPGRL D+ ++ NL+ +TYL +EADRMLDMGFEPQI KIL V
Sbjct: 365 DIVIATPGRLNDLQMNNFINLKSITYLA-NEADRMLDMGFEPQIMKILIDV 414
Score = 297 (109.6 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
Identities = 61/173 (35%), Positives = 95/173 (54%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V +G+ DL A + + Q V +++E +K + ++ + + +IF+ K D I L
Sbjct: 445 VYVGTLDLAAVNTVEQKVIVINEEEKKAFMENFIDSMKPKDKAIIFVGKKSTADDIASDL 504
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ G P S+HGD+ Q +R+ L +FK GK I+ ATD+A+RGLDV D+ +V N+DFP +
Sbjct: 505 GVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRGLDVHDITHVFNFDFPRN 564
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
+E+YVH T + + A ELI IL+ A Q V EL +M
Sbjct: 565 IEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDILQRAKQVVPDELISM 617
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 149/223 (66%), Positives = 174/223 (78%)
Query: 52 DLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVM 111
+L L FEKNFYVE SV S +T+ G D+PKP+ +F + GFPDYV+
Sbjct: 66 ELPKLPTFEKNFYVEHESVRDRSDSEIAQFRKENEMTISGHDIPKPITTFDEAGFPDYVL 125
Query: 112 QEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171
E+ GF +PT IQ QGWPMAL GRD++GIA TGSGKTL+Y LP IVH+NAQP LAPGD
Sbjct: 126 NEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGD 185
Query: 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPG 231
GPIVLVLAPTRELAVQIQ E +KFG SS+I++TC+YGGVPK Q+RDL +G EIVIATPG
Sbjct: 186 GPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPG 245
Query: 232 RLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
RLIDMLE TNL+RVTYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 246 RLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI 288
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 100/241 (41%), Positives = 141/241 (58%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILS---- 272
+L++ +V+ R++DM +R++ + D M + ++K++ +
Sbjct: 257 NLKRVTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLN 314
Query: 273 ---QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGS--RILIFMDTKKGCD 327
QV +GS +L A+H I Q V++VS+ +K ++L K LE + + LIF TK+ CD
Sbjct: 315 DPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCD 374
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
IT+ LR DGWPAL+IHGDK Q ERDWVL EF+ G+SPIM ATDVAARG+DVK + YVIN
Sbjct: 375 DITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVIN 434
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMG 447
YD PG++EDYVH FFT N +LI+I+ EA Q + PEL
Sbjct: 435 YDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLKYD 494
Query: 448 R 448
R
Sbjct: 495 R 495
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 576 (207.8 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 120/246 (48%), Positives = 156/246 (63%)
Query: 41 DYDG--AESPRKLDLDGLTP----------FEKNFYVESPSVAAMSXXXXXXXXXXXXIT 88
D DG P+K D+D L P FEKNFY + +AA+ +
Sbjct: 199 DEDGNPIAPPKKKDIDPLPPIYHSEIEYEPFEKNFYTQHDDIAALDDEQVRELRRTLGVK 258
Query: 89 VEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSG 148
V G PKPV SF GF + +++ + KA + +PTPIQAQ P AL GRD+IGIA+TGSG
Sbjct: 259 VTGPSPPKPVTSFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSG 318
Query: 149 KTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYG 208
KT A++ P ++HV Q L PGDGPI L+LAPTREL++QI E+ KFG + C YG
Sbjct: 319 KTAAFIWPMLMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYG 378
Query: 209 GVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIK 268
G K Q + L++G EI++ATPGR+IDM++ TNLRRVT+LVLDEADRM MGFEPQ++
Sbjct: 379 GGSKWEQSKALEQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVR 438
Query: 269 KILSQV 274
I + V
Sbjct: 439 SICNHV 444
Score = 222 (83.2 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 61/194 (31%), Positives = 99/194 (51%)
Query: 258 MLDMGFEPQIKKILSQVI-----IGSPDL-KANHAIRQHVDIVSES-QKYNKLV-KLLED 309
M F+ +I+++ V+ I DL +AN I Q V + QK+N L+ L++
Sbjct: 452 MFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKF 511
Query: 310 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 369
+ +GS +LIF+ K + ++ L + + L +HGD QA+R+ V+++FK + I+ A
Sbjct: 512 LSEGS-VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVA 570
Query: 370 TDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELI 429
TDVAARGLD+ ++ V+NYD +E + H T + FA L+
Sbjct: 571 TDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLV 630
Query: 430 TILEEAGQKVSPEL 443
LE A Q V +L
Sbjct: 631 RNLEGADQLVPDDL 644
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 509 (184.2 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 109/233 (46%), Positives = 152/233 (65%)
Query: 55 GLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITV-------EGRDVPKPVKSFRDVG-- 105
GL +KNFY+ES ++MS + E R +P P F D
Sbjct: 189 GLPLIKKNFYMESEITSSMSQEQVQNWRKENYNIMCDDLKDGEKRPIPNPACKFEDAFQC 248
Query: 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 165
+P+ VM I KAGF +PTPIQ+Q WP+ L+G DLIG+A+TG+GKTL+YL+P +HV++QP
Sbjct: 249 YPE-VMINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQP 307
Query: 166 FL----APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQK 221
+ +GP +LVL PTRELA+Q++ E +K+ +KS C+YGG + Q++DL K
Sbjct: 308 VVFSLQRARNGPGMLVLTPTRELALQVEAECSKYSYKG-LKSVCVYGGGDRDGQIKDLLK 366
Query: 222 GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
GV+I+IATPGRL D+ ++ L+ ++YLVLDEAD+MLDMGFEPQI KIL +
Sbjct: 367 GVDIIIATPGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDI 419
Score = 283 (104.7 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 58/173 (33%), Positives = 95/173 (54%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V +G+ DL A ++Q++ + +E +K + + +E + +++IF+ K D ++ L
Sbjct: 450 VYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIESMSPKDKVIIFVSRKAVADHLSSDL 509
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ S+HG++ Q +R+ L FK GK I+ ATD+A+RGLDV DV +V NYDFP +
Sbjct: 510 GIRHISVESLHGNREQGDRERALKNFKTGKVRILIATDLASRGLDVHDVTHVYNYDFPRN 569
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
+E+YVH T ++ + A ELI ILE A Q + +L M
Sbjct: 570 IEEYVHRVGRTGRAGRTGVSITLITRSDWKIAGELIHILERANQSIPEDLVEM 622
Score = 41 (19.5 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 282 KANHAIRQHVDIVSESQKYNKLVKLLE 308
+AN +I + + ++E K NKL K +E
Sbjct: 610 RANQSIPEDLVEMAERYKANKLKKEME 636
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 533 (192.7 bits), Expect = 5.8e-76, Sum P(2) = 5.8e-76
Identities = 108/216 (50%), Positives = 140/216 (64%)
Query: 59 FEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKAG 118
F K FY E P +A ++ I + G D+ PV SF GF D ++Q I+K
Sbjct: 265 FNKIFYEEHPDIANLTEEQVFEIRKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQS 324
Query: 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178
PTPIQ Q P+AL GRDLI IA+TGSGKT ++ P+I H+ QP+L GDGPI L L
Sbjct: 325 IETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPIALFL 384
Query: 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE 238
APTRELA QI E+ K+ K+K+T +YGGV K Q ++L+ G EI++ATPGRLIDM++
Sbjct: 385 APTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIK 444
Query: 239 SHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
T L RV+YLVLDEAD+M D GF PQ+ I++ V
Sbjct: 445 LKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHV 480
Score = 268 (99.4 bits), Expect = 5.8e-76, Sum P(2) = 5.8e-76
Identities = 70/212 (33%), Positives = 104/212 (49%)
Query: 247 VTYLVLDEADRMLDMGFEPQIKK----ILSQVIIGSPDL--KANHAIRQHVDIV-SESQK 299
V ++ D + F+P +++ ILS I S + AN I Q V ++ S+S K
Sbjct: 477 VNHVRPDRQTLLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDK 536
Query: 300 YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF 359
+N L L ++ +LIF+ TK +Q++ L G+ ++HGDK+Q ER + F
Sbjct: 537 WNWLTNQLALLLSQGSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTF 596
Query: 360 KAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTA 419
K GK I+ ATDVAARGLD+ +K V+NYD +E + H T
Sbjct: 597 KEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITP 656
Query: 420 ANARFAKELITILEEAGQKVSPELAAMGRGAP 451
+ F+ +LI LE A Q V PEL + P
Sbjct: 657 KDIHFSVDLIKNLESASQFVPPELIDVAMNNP 688
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 424 (154.3 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 94/192 (48%), Positives = 127/192 (66%)
Query: 87 ITVEGRDVPK--PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAE 144
+T +G + K +K+F + P+ V+ + K F +P+PIQ+ WP L GRDLIGIA+
Sbjct: 102 VTGKGVEEAKYAALKTFAESNLPENVL-DCCKT-FEKPSPIQSHTWPFLLDGRDLIGIAK 159
Query: 145 TGSGKTLAYLLPAIVHV-NAQPFLAPGD---GPIVLVLAPTRELAVQIQQESTKFGASSK 200
TGSGKTLA+ +PAI+HV + G P LVL+PTRELAVQI + G
Sbjct: 160 TGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCG 219
Query: 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260
+KS C+YGG KGPQ+ ++ GV+IVI TPGRL D++ES+ L V+++VLDEADRMLD
Sbjct: 220 LKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLD 279
Query: 261 MGFEPQIKKILS 272
MGFE ++ ILS
Sbjct: 280 MGFEEPVRFILS 291
Score = 358 (131.1 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 77/177 (43%), Positives = 105/177 (59%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCDQIT 330
+VIIGS DL ANH + Q ++++ E + +L+ LLE +R+L+F K +++
Sbjct: 324 KVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLE 383
Query: 331 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 390
R L+ GW A+SIHG+K+Q+ER LS FK G P++ ATDVAARGLD+ DV+ VINY F
Sbjct: 384 RFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTF 443
Query: 391 PGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMG 447
P + EDYVH FFT N A EL+ +L EAGQ V +L G
Sbjct: 444 PLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADLLKFG 500
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 494 (179.0 bits), Expect = 1.7e-75, Sum P(2) = 1.7e-75
Identities = 102/225 (45%), Positives = 146/225 (64%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
IT +G +P P++S++D P ++++ I K G+ EPTPIQ Q P+ L+ RD+IG+AETG
Sbjct: 378 ITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETG 437
Query: 147 SGKTLAYLLPAIVHVNAQPFL---APGD-GPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKT A+L+P +V + P + D GP ++LAPTRELA QI++E+ KFG I+
Sbjct: 438 SGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIR 497
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+ + GG+ + Q L+ G EIVIATPGRLID+LE+ L R TY+VLDEADRM+DMG
Sbjct: 498 TVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMG 557
Query: 263 FEPQIKKILSQVIIGS--PDL-KANHAIRQHVDIVSESQKYNKLV 304
FEP ++KIL + + + PD +A + + S KY + V
Sbjct: 558 FEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTV 602
Score = 298 (110.0 bits), Expect = 1.7e-75, Sum P(2) = 1.7e-75
Identities = 67/172 (38%), Positives = 95/172 (55%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V IGS K + + Q V ++SES+K KL+ +LE D I+IF++ KKGCD + + L
Sbjct: 626 VYIGSAG-KPHERVEQKVFLMSESEKRKKLLAILEQGFDPP-IIIFVNQKKGCDVLAKSL 683
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
G+ A ++HG K Q +R++ LS KAG I+ ATDVA RG+D++DV V+NYD +
Sbjct: 684 EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKN 743
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELI-TILEEAGQKVSPELA 444
+EDY+H F T ++ EL ILE PELA
Sbjct: 744 IEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELA 795
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 494 (179.0 bits), Expect = 1.7e-75, Sum P(2) = 1.7e-75
Identities = 102/225 (45%), Positives = 146/225 (64%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
IT +G +P P++S++D P ++++ I K G+ EPTPIQ Q P+ L+ RD+IG+AETG
Sbjct: 379 ITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETG 438
Query: 147 SGKTLAYLLPAIVHVNAQPFL---APGD-GPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKT A+L+P +V + P + D GP ++LAPTRELA QI++E+ KFG I+
Sbjct: 439 SGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIR 498
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+ + GG+ + Q L+ G EIVIATPGRLID+LE+ L R TY+VLDEADRM+DMG
Sbjct: 499 TVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMG 558
Query: 263 FEPQIKKILSQVIIGS--PDL-KANHAIRQHVDIVSESQKYNKLV 304
FEP ++KIL + + + PD +A + + S KY + V
Sbjct: 559 FEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTV 603
Score = 298 (110.0 bits), Expect = 1.7e-75, Sum P(2) = 1.7e-75
Identities = 67/172 (38%), Positives = 95/172 (55%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V IGS K + + Q V ++SES+K KL+ +LE D I+IF++ KKGCD + + L
Sbjct: 627 VYIGSAG-KPHERVEQKVFLMSESEKRKKLLAILEQGFDPP-IIIFVNQKKGCDVLAKSL 684
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
G+ A ++HG K Q +R++ LS KAG I+ ATDVA RG+D++DV V+NYD +
Sbjct: 685 EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKN 744
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELI-TILEEAGQKVSPELA 444
+EDY+H F T ++ EL ILE PELA
Sbjct: 745 IEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELA 796
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 494 (179.0 bits), Expect = 1.7e-75, Sum P(2) = 1.7e-75
Identities = 102/225 (45%), Positives = 146/225 (64%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
IT +G +P P++S++D P ++++ I K G+ EPTPIQ Q P+ L+ RD+IG+AETG
Sbjct: 379 ITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETG 438
Query: 147 SGKTLAYLLPAIVHVNAQPFL---APGD-GPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKT A+L+P +V + P + D GP ++LAPTRELA QI++E+ KFG I+
Sbjct: 439 SGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIR 498
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+ + GG+ + Q L+ G EIVIATPGRLID+LE+ L R TY+VLDEADRM+DMG
Sbjct: 499 TVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMG 558
Query: 263 FEPQIKKILSQVIIGS--PDL-KANHAIRQHVDIVSESQKYNKLV 304
FEP ++KIL + + + PD +A + + S KY + V
Sbjct: 559 FEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTV 603
Score = 298 (110.0 bits), Expect = 1.7e-75, Sum P(2) = 1.7e-75
Identities = 67/172 (38%), Positives = 95/172 (55%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V IGS K + + Q V ++SES+K KL+ +LE D I+IF++ KKGCD + + L
Sbjct: 627 VYIGSAG-KPHERVEQKVFLMSESEKRKKLLAILEQGFDPP-IIIFVNQKKGCDVLAKSL 684
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
G+ A ++HG K Q +R++ LS KAG I+ ATDVA RG+D++DV V+NYD +
Sbjct: 685 EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKN 744
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELI-TILEEAGQKVSPELA 444
+EDY+H F T ++ EL ILE PELA
Sbjct: 745 IEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELA 796
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 494 (179.0 bits), Expect = 1.7e-75, Sum P(2) = 1.7e-75
Identities = 102/225 (45%), Positives = 146/225 (64%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
IT +G +P P++S++D P ++++ I K G+ EPTPIQ Q P+ L+ RD+IG+AETG
Sbjct: 379 ITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETG 438
Query: 147 SGKTLAYLLPAIVHVNAQPFL---APGD-GPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKT A+L+P +V + P + D GP ++LAPTRELA QI++E+ KFG I+
Sbjct: 439 SGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIR 498
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+ + GG+ + Q L+ G EIVIATPGRLID+LE+ L R TY+VLDEADRM+DMG
Sbjct: 499 TVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMG 558
Query: 263 FEPQIKKILSQVIIGS--PDL-KANHAIRQHVDIVSESQKYNKLV 304
FEP ++KIL + + + PD +A + + S KY + V
Sbjct: 559 FEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTV 603
Score = 298 (110.0 bits), Expect = 1.7e-75, Sum P(2) = 1.7e-75
Identities = 67/172 (38%), Positives = 95/172 (55%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V IGS K + + Q V ++SES+K KL+ +LE D I+IF++ KKGCD + + L
Sbjct: 627 VYIGSAG-KPHERVEQKVFLMSESEKRKKLLAILEQGFDPP-IIIFVNQKKGCDVLAKSL 684
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
G+ A ++HG K Q +R++ LS KAG I+ ATDVA RG+D++DV V+NYD +
Sbjct: 685 EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKN 744
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELI-TILEEAGQKVSPELA 444
+EDY+H F T ++ EL ILE PELA
Sbjct: 745 IEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELA 796
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 530 (191.6 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 121/231 (52%), Positives = 149/231 (64%)
Query: 56 LTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITV-----EG--RDVPKPVKSFRDV--GF 106
L P EKNFY ES A MS + EG R +P PV F DV +
Sbjct: 2 LPPIEKNFYKESSRTACMSPEEVELWRKENNNIICDDLKEGEKRCIPNPVCKFEDVFEQY 61
Query: 107 PDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF 166
PD +M I K GF +PTPIQ+Q WP+ L+G DLIGIA+TG+GKTLAYL+P +H+ +QP
Sbjct: 62 PD-IMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPI 120
Query: 167 LAPGD---GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGV 223
P D GP +LVLAPTRELA+Q++ E K+ KS CIYGG + Q+ + KGV
Sbjct: 121 --PKDKRGGPGMLVLAPTRELALQVEAECLKYTYKG-FKSICIYGGGDRKAQINVVTKGV 177
Query: 224 EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
+IVIATPGRL D+ ++ NL+ +TYLVLDEADRMLDMGFEPQI KIL V
Sbjct: 178 DIVIATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDV 228
Score = 249 (92.7 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 55/173 (31%), Positives = 90/173 (52%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V +G+ DL + + +++ + + K +++ +++F+ D I L
Sbjct: 259 VYVGTLDLAVSGVVLKYLQFDKDIFTW-KYMQVNAQSFCTDVVVVFVQLHVVADDIASDL 317
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ G P S+HGD+ Q +R+ L +FK GK I+ ATD+A+RGLDV D+ +V N+DFP +
Sbjct: 318 GVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRGLDVHDITHVFNFDFPRN 377
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
+E+YVH T + + A ELI IL+ A Q V EL +M
Sbjct: 378 IEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDILQRAKQVVPDELISM 430
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 149/227 (65%), Positives = 172/227 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDV-PKPVKSFRDVGFP 107
+K DL L FEKNFYVE P VA ++ ITV G DV PKPV +F FP
Sbjct: 41 KKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFP 100
Query: 108 DYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL 167
YVM + F EPTPIQ QG+P+AL GRD++GIA+TGSGKTLAYLLPAIVH+N QP+L
Sbjct: 101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL 160
Query: 168 APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVI 227
GDGPI LVLAPTRELA Q+QQ + +G S++KSTCIYGG PKGPQ+RDL++GVEI I
Sbjct: 161 ERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICI 220
Query: 228 ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
ATPGRLID LES TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 221 ATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 267
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 100/236 (42%), Positives = 154/236 (65%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKIL----- 271
+L++ +V+ R++DM +R++ + D M + +++++
Sbjct: 236 NLRRCTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 293
Query: 272 --SQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCD 327
+Q+ +G+ +L ANH I Q VD+ ES+K +KL++L+E+IM ++ +IF++TK+ CD
Sbjct: 294 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 353
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+TR++R DGWPA+ IHGDKSQ ERDWVL+EF++GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 354 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 413
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDYVH FFT N + A+ELI +LEEA Q ++P+L
Sbjct: 414 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 469
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 149/227 (65%), Positives = 172/227 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDV-PKPVKSFRDVGFP 107
+K DL L FEKNFYVE P VA ++ ITV G DV PKPV +F FP
Sbjct: 41 KKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFP 100
Query: 108 DYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL 167
YVM + F EPTPIQ QG+P+AL GRD++GIA+TGSGKTLAYLLPAIVH+N QP+L
Sbjct: 101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL 160
Query: 168 APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVI 227
GDGPI LVLAPTRELA Q+QQ + +G S++KSTCIYGG PKGPQ+RDL++GVEI I
Sbjct: 161 ERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICI 220
Query: 228 ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
ATPGRLID LES TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 221 ATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 267
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 100/236 (42%), Positives = 154/236 (65%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKIL----- 271
+L++ +V+ R++DM +R++ + D M + +++++
Sbjct: 236 NLRRCTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 293
Query: 272 --SQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCD 327
+Q+ +G+ +L ANH I Q VD+ ES+K +KL++L+E+IM ++ +IF++TK+ CD
Sbjct: 294 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 353
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+TR++R DGWPA+ IHGDKSQ ERDWVL+EF++GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 354 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 413
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDYVH FFT N + A+ELI +LEEA Q ++P+L
Sbjct: 414 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 469
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 149/227 (65%), Positives = 172/227 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDV-PKPVKSFRDVGFP 107
+K DL L FEKNFYVE P VA ++ ITV G DV PKPV +F FP
Sbjct: 122 KKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFP 181
Query: 108 DYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL 167
YVM + F EPTPIQ QG+P+AL GRD++GIA+TGSGKTLAYLLPAIVH+N QP+L
Sbjct: 182 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL 241
Query: 168 APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVI 227
GDGPI LVLAPTRELA Q+QQ + +G S++KSTCIYGG PKGPQ+RDL++GVEI I
Sbjct: 242 ERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICI 301
Query: 228 ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
ATPGRLID LES TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 302 ATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 348
Score = 500 (181.1 bits), Expect = 1.3e-47, P = 1.3e-47
Identities = 100/236 (42%), Positives = 154/236 (65%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKIL----- 271
+L++ +V+ R++DM +R++ + D M + +++++
Sbjct: 317 NLRRCTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 374
Query: 272 --SQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCD 327
+Q+ +G+ +L ANH I Q VD+ ES+K +KL++L+E+IM ++ +IF++TK+ CD
Sbjct: 375 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 434
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+TR++R DGWPA+ IHGDKSQ ERDWVL+EF++GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 435 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 494
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDYVH FFT N + A+ELI +LEEA Q ++P+L
Sbjct: 495 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 550
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 149/227 (65%), Positives = 172/227 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDV-PKPVKSFRDVGFP 107
+K DL L FEKNFYVE P VA ++ ITV G DV PKPV +F FP
Sbjct: 120 KKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFP 179
Query: 108 DYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL 167
YVM + F EPTPIQ QG+P+AL GRD++GIA+TGSGKTLAYLLPAIVH+N QP+L
Sbjct: 180 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL 239
Query: 168 APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVI 227
GDGPI LVLAPTRELA Q+QQ + +G S++KSTCIYGG PKGPQ+RDL++GVEI I
Sbjct: 240 ERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICI 299
Query: 228 ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
ATPGRLID LES TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 300 ATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 346
Score = 500 (181.1 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 100/236 (42%), Positives = 154/236 (65%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKIL----- 271
+L++ +V+ R++DM +R++ + D M + +++++
Sbjct: 315 NLRRCTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 372
Query: 272 --SQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCD 327
+Q+ +G+ +L ANH I Q VD+ ES+K +KL++L+E+IM ++ +IF++TK+ CD
Sbjct: 373 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 432
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+TR++R DGWPA+ IHGDKSQ ERDWVL+EF++GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 433 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 492
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDYVH FFT N + A+ELI +LEEA Q ++P+L
Sbjct: 493 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 548
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 149/227 (65%), Positives = 172/227 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDV-PKPVKSFRDVGFP 107
+K DL L FEKNFYVE P VA ++ ITV G DV PKPV +F FP
Sbjct: 120 KKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFP 179
Query: 108 DYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL 167
YVM + F EPTPIQ QG+P+AL GRD++GIA+TGSGKTLAYLLPAIVH+N QP+L
Sbjct: 180 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL 239
Query: 168 APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVI 227
GDGPI LVLAPTRELA Q+QQ + +G S++KSTCIYGG PKGPQ+RDL++GVEI I
Sbjct: 240 ERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICI 299
Query: 228 ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
ATPGRLID LES TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 300 ATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 346
Score = 500 (181.1 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 100/236 (42%), Positives = 154/236 (65%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKIL----- 271
+L++ +V+ R++DM +R++ + D M + +++++
Sbjct: 315 NLRRCTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 372
Query: 272 --SQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCD 327
+Q+ +G+ +L ANH I Q VD+ ES+K +KL++L+E+IM ++ +IF++TK+ CD
Sbjct: 373 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 432
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+TR++R DGWPA+ IHGDKSQ ERDWVL+EF++GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 433 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 492
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDYVH FFT N + A+ELI +LEEA Q ++P+L
Sbjct: 493 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 548
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 149/227 (65%), Positives = 172/227 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDV-PKPVKSFRDVGFP 107
+K DL L FEKNFYVE P VA ++ ITV G DV PKPV +F FP
Sbjct: 122 KKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFP 181
Query: 108 DYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL 167
YVM + F EPTPIQ QG+P+AL GRD++GIA+TGSGKTLAYLLPAIVH+N QP+L
Sbjct: 182 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL 241
Query: 168 APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVI 227
GDGPI LVLAPTRELA Q+QQ + +G S++KSTCIYGG PKGPQ+RDL++GVEI I
Sbjct: 242 ERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICI 301
Query: 228 ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
ATPGRLID LES TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 302 ATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 348
Score = 500 (181.1 bits), Expect = 1.3e-47, P = 1.3e-47
Identities = 100/236 (42%), Positives = 154/236 (65%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKIL----- 271
+L++ +V+ R++DM +R++ + D M + +++++
Sbjct: 317 NLRRCTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 374
Query: 272 --SQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCD 327
+Q+ +G+ +L ANH I Q VD+ ES+K +KL++L+E+IM ++ +IF++TK+ CD
Sbjct: 375 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 434
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+TR++R DGWPA+ IHGDKSQ ERDWVL+EF++GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 435 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 494
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDYVH FFT N + A+ELI +LEEA Q ++P+L
Sbjct: 495 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 550
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 149/227 (65%), Positives = 172/227 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDV-PKPVKSFRDVGFP 107
+K DL L FEKNFYVE P VA ++ ITV G DV PKPV +F FP
Sbjct: 41 KKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFP 100
Query: 108 DYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL 167
YVM + F EPTPIQ QG+P+AL GRD++GIA+TGSGKTLAYLLPAIVH+N QP+L
Sbjct: 101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL 160
Query: 168 APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVI 227
GDGPI LVLAPTRELA Q+QQ + +G S++KSTCIYGG PKGPQ+RDL++GVEI I
Sbjct: 161 ERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICI 220
Query: 228 ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
ATPGRLID LES TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 221 ATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 267
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 100/236 (42%), Positives = 154/236 (65%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKIL----- 271
+L++ +V+ R++DM +R++ + D M + +++++
Sbjct: 236 NLRRCTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 293
Query: 272 --SQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCD 327
+Q+ +G+ +L ANH I Q VD+ ES+K +KL++L+E+IM ++ +IF++TK+ CD
Sbjct: 294 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 353
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+TR++R DGWPA+ IHGDKSQ ERDWVL+EF++GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 354 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 413
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDYVH FFT N + A+ELI +LEEA Q ++P+L
Sbjct: 414 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 469
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 149/227 (65%), Positives = 172/227 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDV-PKPVKSFRDVGFP 107
+K DL L FEKNFYVE P VA ++ ITV G DV PKPV +F FP
Sbjct: 41 KKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFP 100
Query: 108 DYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL 167
YVM + F EPTPIQ QG+P+AL GRD++GIA+TGSGKTLAYLLPAIVH+N QP+L
Sbjct: 101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL 160
Query: 168 APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVI 227
GDGPI LVLAPTRELA Q+QQ + +G S++KSTCIYGG PKGPQ+RDL++GVEI I
Sbjct: 161 ERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICI 220
Query: 228 ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
ATPGRLID LES TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 221 ATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 267
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 100/238 (42%), Positives = 154/238 (64%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKIL----- 271
+L++ +V+ R++DM +R++ + D M + +++++
Sbjct: 236 NLRRCTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 293
Query: 272 --SQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCD 327
+Q+ +G+ +L ANH I Q VD+ ES+K +KL++L+E+IM ++ +IF++TK+ CD
Sbjct: 294 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 353
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGL--DVKDVKYV 385
+TR++R DGWPA+ IHGDKSQ ERDWVL+EF++GK+PI+ ATDVA+RGL DV+DVK+V
Sbjct: 354 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLGFDVEDVKFV 413
Query: 386 INYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
INYD+P S EDYVH FFT N + A+ELI +LEEA Q ++P+L
Sbjct: 414 INYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 471
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 148/226 (65%), Positives = 171/226 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPD 108
+K DLD L FEKNFY E+P V MS ITV G PKPV +F FP
Sbjct: 45 KKWDLDQLPKFEKNFYNENPEVHHMSQYDVEEYRRKREITVRGSGCPKPVTNFHQAQFPQ 104
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
YVM + + F EPT IQAQG+P+AL GRD++GIA+TGSGKTLAYLLPAIVH+N QP+L
Sbjct: 105 YVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLE 164
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 228
GDGPI LVLAPTRELA Q+QQ + +G SS+IKSTC+YGG PKGPQ+RDL++GVEI IA
Sbjct: 165 RGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIA 224
Query: 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
TPGRLID LE TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 225 TPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 270
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 104/245 (42%), Positives = 158/245 (64%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILS---- 272
+L++ +V+ R++DM +R++ + D M + +++++
Sbjct: 239 NLRRCTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQ 296
Query: 273 ---QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCD 327
Q+ IG+ +L ANH I Q VD+ E++K NKL++L+E+IM ++ +IF++TKK CD
Sbjct: 297 DYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCD 356
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
++TR++R DGWPA+ IHGDKSQ ERDWVL+EF++GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 357 ELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVIN 416
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM- 446
YD+P S EDYVH FFT N R A++L+ +LEEA Q ++P+L +
Sbjct: 417 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEARQAINPKLLQLV 476
Query: 447 --GRG 449
GRG
Sbjct: 477 DTGRG 481
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 512 (185.3 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 107/229 (46%), Positives = 152/229 (66%)
Query: 56 LTPFEKNFYVESPSVAAMSXXXXXX-XXXXXXITV------EGRDVPKPVKSFRDV--GF 106
L P +KNFY+ES + + MS IT E R +PKP F+D +
Sbjct: 171 LPPVKKNFYIESKATSCMSEMQVINWRKENFNITCDDLKSGEKRLIPKPTCRFKDAFQQY 230
Query: 107 PDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF 166
PD +++ I + G +PTPIQ+Q WP+ L+G DLI +A+TG+GKTL+YL+P +H+++QP
Sbjct: 231 PD-LLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI 289
Query: 167 LAPG-DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEI 225
+GP +LVL PTRELA+ ++ E +K+ +KS CIYGG + Q+ D+ KGV+I
Sbjct: 290 SREQRNGPGMLVLTPTRELALHVEAECSKYSYKG-LKSICIYGGRNRNGQIEDISKGVDI 348
Query: 226 VIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
+IATPGRL D+ +++ NLR +TYLV+DEAD+MLDM FEPQI+KIL V
Sbjct: 349 IIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDV 397
Score = 262 (97.3 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 50/173 (28%), Positives = 95/173 (54%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V +G+ +L A + ++Q++ + +E +K + +E++ ++++F+ K D ++
Sbjct: 428 VYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPNDKVIMFVSQKHIADDLSSDF 487
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ G A S+HG+ Q++++ + +FK+G I+ TD+ +RGLD+ DV +V NYDFP +
Sbjct: 488 NIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRN 547
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
++ YVH T +++ A ELI IL+ A Q V +L M
Sbjct: 548 IDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILDRANQSVPEDLVVM 600
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 145/227 (63%), Positives = 172/227 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRD-VPKPVKSFRDVGFP 107
+K DL+ L FEKNFYVE P VA ++ IT+ G + PKPV +F FP
Sbjct: 39 KKWDLNELPKFEKNFYVEHPEVARLTPYEVEELRRKKEITIRGMEGCPKPVFAFHQCSFP 98
Query: 108 DYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL 167
YVM + F EPTPIQ QG+P+AL GRD++GIA+TGSGKTLAYLLPAIVH+N QP+L
Sbjct: 99 QYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL 158
Query: 168 APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVI 227
GDGPI LVLAPTRELA Q+QQ + +G S++KSTCIYGG PKGPQ+RDL++GVEI I
Sbjct: 159 ERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICI 218
Query: 228 ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
ATPGRLID LE+ TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 219 ATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 265
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 100/236 (42%), Positives = 153/236 (64%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILS---- 272
+L++ +V+ R++DM +R++ + D M + +++++
Sbjct: 234 NLRRCTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQ 291
Query: 273 ---QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCD 327
Q+ +G+ +L ANH I Q VD+ ES+K +KL++L+E+IM ++ +IF++TK+ CD
Sbjct: 292 DYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 351
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+TR++R DGWPA+ IHGDKSQ ERDWVL+EF++GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 352 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 411
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDYVH FFT N + A+ELI +LEEA Q ++P+L
Sbjct: 412 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 467
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 139/226 (61%), Positives = 170/226 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPD 108
+K +LD L FEKNFY E P V + +TV G + PKP+ +F + FP
Sbjct: 32 KKWNLDELPKFEKNFYQEHPDVVRRTAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPA 91
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
VM+ I + F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL
Sbjct: 92 NVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 151
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 228
GDGPI LVLAPTRELA Q+QQ + ++ + ++KSTCIYGG PKGPQ+RDL++GVEI IA
Sbjct: 152 RGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 211
Query: 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
TPGRLID LE+ TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 212 TPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 257
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 95/236 (40%), Positives = 150/236 (63%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKI----LS 272
+L++ +V+ R++DM +R++ + D M + +++++ L
Sbjct: 226 NLRRCTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 283
Query: 273 QVI---IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCD 327
+ + IG+ +L ANH I Q VD+ + +K +KL++L+E+IM ++ ++F++TK+ CD
Sbjct: 284 EYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCD 343
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+TR++R DGWPA+ IHGDKSQ ERDWVL+EFK GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 344 DLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 403
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDY+H FFT N + +LI++L EA Q ++P+L
Sbjct: 404 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKL 459
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 139/226 (61%), Positives = 170/226 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPD 108
+K +LD L FEKNFY E P V + +TV G + PKP+ +F + FP
Sbjct: 40 KKWNLDELPKFEKNFYQEHPDVVRRTAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPA 99
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
VM+ I + F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL
Sbjct: 100 NVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 159
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 228
GDGPI LVLAPTRELA Q+QQ + ++ + ++KSTCIYGG PKGPQ+RDL++GVEI IA
Sbjct: 160 RGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 219
Query: 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
TPGRLID LE+ TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 220 TPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 265
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 95/236 (40%), Positives = 150/236 (63%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKI----LS 272
+L++ +V+ R++DM +R++ + D M + +++++ L
Sbjct: 234 NLRRCTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 291
Query: 273 QVI---IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCD 327
+ + IG+ +L ANH I Q VD+ + +K +KL++L+E+IM ++ ++F++TK+ CD
Sbjct: 292 EYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCD 351
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+TR++R DGWPA+ IHGDKSQ ERDWVL+EFK GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 352 DLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 411
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDY+H FFT N + +LI++L EA Q ++P+L
Sbjct: 412 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKL 467
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 141/226 (62%), Positives = 170/226 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPD 108
+K +LD L FEKNFY E P +A + ITV G + PKPV +F + FP
Sbjct: 44 KKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPA 103
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
VM I++ F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 163
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 228
GDGPI LVLAPTRELA Q+QQ + ++ + ++KSTCIYGG PKGPQ+RDL++GVEI IA
Sbjct: 164 RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
TPGRLID LE TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 94/236 (39%), Positives = 148/236 (62%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILSQVI- 275
+L++ +V+ R++DM +R++ + D M + +++++ +
Sbjct: 238 NLRRTTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 276 ------IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCD 327
IG+ +L ANH I Q VD+ + +K KL++L+E+IM ++ ++F++TK+ CD
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
++TR++R DGWPA+ IHGDKSQ ERDWVL+EFK GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDY+H FFT N + +LI++L EA Q ++P+L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 471
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 141/226 (62%), Positives = 170/226 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPD 108
+K +LD L FEKNFY E P +A + ITV G + PKPV +F + FP
Sbjct: 101 KKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPA 160
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
VM I++ F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL
Sbjct: 161 NVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 220
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 228
GDGPI LVLAPTRELA Q+QQ + ++ + ++KSTCIYGG PKGPQ+RDL++GVEI IA
Sbjct: 221 RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 280
Query: 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
TPGRLID LE TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 281 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 326
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 94/236 (39%), Positives = 148/236 (62%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILSQVI- 275
+L++ +V+ R++DM +R++ + D M + +++++ +
Sbjct: 295 NLRRTTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 352
Query: 276 ------IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCD 327
IG+ +L ANH I Q VD+ + +K KL++L+E+IM ++ ++F++TK+ CD
Sbjct: 353 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 412
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
++TR++R DGWPA+ IHGDKSQ ERDWVL+EFK GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 413 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 472
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDY+H FFT N + +LI++L EA Q ++P+L
Sbjct: 473 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 528
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 141/226 (62%), Positives = 170/226 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPD 108
+K +LD L FEKNFY E P +A + ITV G + PKPV +F + FP
Sbjct: 44 KKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPA 103
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
VM I++ F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 163
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 228
GDGPI LVLAPTRELA Q+QQ + ++ + ++KSTCIYGG PKGPQ+RDL++GVEI IA
Sbjct: 164 RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
TPGRLID LE TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 94/236 (39%), Positives = 148/236 (62%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILSQVI- 275
+L++ +V+ R++DM +R++ + D M + +++++ +
Sbjct: 238 NLRRTTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 276 ------IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCD 327
IG+ +L ANH I Q VD+ + +K KL++L+E+IM ++ ++F++TK+ CD
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
++TR++R DGWPA+ IHGDKSQ ERDWVL+EFK GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDY+H FFT N + +LI++L EA Q ++P+L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 471
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 141/226 (62%), Positives = 170/226 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPD 108
+K +LD L FEKNFY E P +A + ITV G + PKPV +F + FP
Sbjct: 44 KKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPA 103
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
VM I++ F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 163
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 228
GDGPI LVLAPTRELA Q+QQ + ++ + ++KSTCIYGG PKGPQ+RDL++GVEI IA
Sbjct: 164 RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
TPGRLID LE TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 94/236 (39%), Positives = 148/236 (62%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILSQVI- 275
+L++ +V+ R++DM +R++ + D M + +++++ +
Sbjct: 238 NLRRTTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 276 ------IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCD 327
IG+ +L ANH I Q VD+ + +K KL++L+E+IM ++ ++F++TK+ CD
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
++TR++R DGWPA+ IHGDKSQ ERDWVL+EFK GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDY+H FFT N + +LI++L EA Q ++P+L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 471
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 141/226 (62%), Positives = 170/226 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPD 108
+K +LD L FEKNFY E P +A + ITV G + PKPV +F + FP
Sbjct: 44 KKWNLDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPA 103
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
VM I++ F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 163
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 228
GDGPI LVLAPTRELA Q+QQ + ++ + ++KSTCIYGG PKGPQ+RDL++GVEI IA
Sbjct: 164 RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
TPGRLID LE TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 94/236 (39%), Positives = 148/236 (62%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILSQVI- 275
+L++ +V+ R++DM +R++ + D M + +++++ +
Sbjct: 238 NLRRTTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 276 ------IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCD 327
IG+ +L ANH I Q VD+ + +K KL++L+E+IM ++ ++F++TK+ CD
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
++TR++R DGWPA+ IHGDKSQ ERDWVL+EFK GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDY+H FFT N + +LI++L EA Q ++P+L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 471
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 141/226 (62%), Positives = 170/226 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPD 108
+K +LD L FEKNFY E P +A + ITV G + PKPV +F + FP
Sbjct: 44 KKWNLDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPA 103
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
VM I++ F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 163
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 228
GDGPI LVLAPTRELA Q+QQ + ++ + ++KSTCIYGG PKGPQ+RDL++GVEI IA
Sbjct: 164 RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
TPGRLID LE TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 94/236 (39%), Positives = 148/236 (62%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILSQVI- 275
+L++ +V+ R++DM +R++ + D M + +++++ +
Sbjct: 238 NLRRTTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 276 ------IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCD 327
IG+ +L ANH I Q VD+ + +K KL++L+E+IM ++ ++F++TK+ CD
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
++TR++R DGWPA+ IHGDKSQ ERDWVL+EFK GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDY+H FFT N + +LI++L EA Q ++P+L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 471
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 141/226 (62%), Positives = 170/226 (75%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPD 108
+K +LD L FEKNFY E P +A + ITV G + PKPV +F + FP
Sbjct: 44 KKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPA 103
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
VM I++ F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 163
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 228
GDGPI LVLAPTRELA Q+QQ + ++ + ++KSTCIYGG PKGPQ+RDL++GVEI IA
Sbjct: 164 RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
TPGRLID LE TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 93/236 (39%), Positives = 147/236 (62%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILSQVI- 275
+L++ +V+ R++DM +R++ + D M + +++++ +
Sbjct: 238 NLRRTTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 276 ------IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCD 327
IG+ +L ANH I Q VD+ + +K KL++L+E+IM ++ ++F++TK+ CD
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
++TR++R DGWPA+ IHGDKSQ ER WVL+EFK GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDY+H FFT N + +LI++L EA Q ++P+L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 471
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 141/226 (62%), Positives = 169/226 (74%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPD 108
+K DLD FEKNFY E P +A + ITV G + PKPV +F + FP
Sbjct: 44 KKWDLDEPPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPA 103
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
VM I++ F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 163
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 228
GDGPI LVLAPTRELA Q+QQ + ++ + ++KSTCIYGG PKGPQ+RDL++GVEI IA
Sbjct: 164 RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
TPGRLID LE TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 94/236 (39%), Positives = 148/236 (62%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILSQVI- 275
+L++ +V+ R++DM +R++ + D M + +++++ +
Sbjct: 238 NLRRTTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 276 ------IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCD 327
IG+ +L ANH I Q VD+ + +K KL++L+E+IM ++ ++F++TK+ CD
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
++TR++R DGWPA+ IHGDKSQ ERDWVL+EFK GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDY+H FFT N + +LI++L EA Q ++P+L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 471
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 140/226 (61%), Positives = 169/226 (74%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPD 108
+K +LD L FEKNFY E P +A + ITV G + PKPV +F + FP
Sbjct: 44 KKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPA 103
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
VM I++ F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 163
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 228
GDGPI LVLAPTRELA Q+QQ + ++ + ++KSTCIYGG PKGPQ+RDL++GVE IA
Sbjct: 164 RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIA 223
Query: 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
TPGRLID LE TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 94/236 (39%), Positives = 148/236 (62%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILSQVI- 275
+L++ +V+ R++DM +R++ + D M + +++++ +
Sbjct: 238 NLRRTTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 276 ------IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCD 327
IG+ +L ANH I Q VD+ + +K KL++L+E+IM ++ ++F++TK+ CD
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
++TR++R DGWPA+ IHGDKSQ ERDWVL+EFK GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDY+H FFT N + +LI++L EA Q ++P+L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 471
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 481 (174.4 bits), Expect = 3.3e-72, Sum P(2) = 3.3e-72
Identities = 99/225 (44%), Positives = 145/225 (64%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
IT +G +P P++++++ P ++++ I K G+ +PTPIQ Q P+ L+ RD+IG+AETG
Sbjct: 366 ITTKGGKIPNPIRNWKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETG 425
Query: 147 SGKTLAYLLPAIVHVNAQPFL---APGD-GPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKT A+L+P +V + P + D GP ++LAPTRELA QI++E+ KFG I+
Sbjct: 426 SGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIR 485
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+ + GG+ + Q L+ G EIVIATPGRLID+LE+ L R TY+VLDEADRM+DMG
Sbjct: 486 TVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMG 545
Query: 263 FEPQIKKILSQVIIGS--PDLK-ANHAIRQHVDIVSESQKYNKLV 304
FEP ++KIL + + + PD A + + S KY + V
Sbjct: 546 FEPDVQKILEYIPVTNQKPDTDDAEDPEKMMQNFESGKHKYRQTV 590
Score = 280 (103.6 bits), Expect = 3.3e-72, Sum P(2) = 3.3e-72
Identities = 63/172 (36%), Positives = 94/172 (54%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V IGS K + + Q V ++SE +K KL+++L + I+IF++ KKGCD + + L
Sbjct: 614 VYIGSAG-KPHERVEQKVILMSEGEKRKKLLEVLASGFEPP-IIIFVNQKKGCDVLAKSL 671
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
G+ A ++HG K Q +R++ LS KAG I+ ATDVA RG+D++DV V+NYD +
Sbjct: 672 EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKN 731
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELI-TILEEAGQKVSPELA 444
+EDY+H F T ++ +L ILE PELA
Sbjct: 732 IEDYIHRIGRTGRAGKSGVAMTFLTKEDSSVFYDLKQAILESPVSTCPPELA 783
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 140/226 (61%), Positives = 173/226 (76%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPD 108
R +D L PF+KNFY E P+VA S ITV G+ VP P++ F +V PD
Sbjct: 232 RPVDFSNLAPFKKNFYQEHPNVANRSPYEVQRYREEQEITVRGQ-VPNPIQDFSEVHLPD 290
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
YVM+EI + G+ PT IQAQGWP+A+ G + +GIA+TGSGKTL Y+LPAIVH+N Q L
Sbjct: 291 YVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQ 350
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 228
GDGPI LVLAPTRELA QIQQ +T+FG+SS +++TC++GG PKG Q+RDLQ+G EIVIA
Sbjct: 351 RGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIA 410
Query: 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
TPGRLID L + +TNL+R TYLVLDEADRMLDMGFEPQI+KI+SQ+
Sbjct: 411 TPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQI 456
Score = 417 (151.9 bits), Expect = 2.2e-38, P = 2.2e-38
Identities = 96/245 (39%), Positives = 141/245 (57%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILS---- 272
+L++ +V+ R++DM +R++ + D M + ++K++
Sbjct: 425 NLKRCTYLVLDEADRMLDM--GFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLG 482
Query: 273 ---QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGS----RILIFMDTKKG 325
Q+ IGS +L ANH IRQ VD+ E K KL LL DI D S +I+IF++TK+
Sbjct: 483 NYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRR 542
Query: 326 CDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 385
D + R +R G +IHGDKSQ+ERD+VL EF++GKS I+ ATDVAARGLDV +KYV
Sbjct: 543 VDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYV 602
Query: 386 INYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAA 445
IN+D+P + EDY+H FFT NA+ AK L+ +L EA Q+++P L
Sbjct: 603 INFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALEN 662
Query: 446 MGRGA 450
+ R +
Sbjct: 663 LARNS 667
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 491 (177.9 bits), Expect = 1.7e-71, Sum P(2) = 1.7e-71
Identities = 93/189 (49%), Positives = 135/189 (71%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
I+++G VP+P++++ + GFPD V Q + + G+ EPTPIQ Q P+ L+ RD+IG+AETG
Sbjct: 289 ISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETG 348
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGD----GPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKT A+LLP +V + + P + + GP +++APTRELA QI++E+ KFG IK
Sbjct: 349 SGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIK 408
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+ + GG + Q L+ GVE+VIATPGRL+D+LE+ L + TY++LDEADRMLDMG
Sbjct: 409 TVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMG 468
Query: 263 FEPQIKKIL 271
FEP ++K+L
Sbjct: 469 FEPDVQKVL 477
Score = 256 (95.2 bits), Expect = 1.7e-71, Sum P(2) = 1.7e-71
Identities = 64/172 (37%), Positives = 88/172 (51%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V IGS K + Q V +V E +K KLV++LE I+IF++ KKG D +++ L
Sbjct: 536 VHIGSAG-KPTERVEQVVYMVPEDRKRKKLVEVLESQFQPP-IIIFVNQKKGADMLSKGL 593
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
G+ +HG K Q +R++ L K G S I+ ATDVA RG+DVKDV V+NYD S
Sbjct: 594 TKLGFKPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKS 653
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAG-QKVSPELA 444
+EDY H F T + +L +L E+ PELA
Sbjct: 654 IEDYTHRIGRTGRAGKHGKAITFLTPDDTAVYFDLKQVLVESPVSSCPPELA 705
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 423 (154.0 bits), Expect = 1.1e-69, Sum P(2) = 1.1e-69
Identities = 86/202 (42%), Positives = 126/202 (62%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
I G +VP PV +F ++ + + I + + +PTP+Q P+ GRDL+ A+TG
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 147 SGKTLAYLLPAIV------HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200
SGKT A+ P I H+ +P G P+ ++L+PTRELA QI E+ KF +
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIE-RPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTG 252
Query: 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260
+K YGG P Q+R+L++GV+I++ATPGRL D+LE +L+ V +L LDEADRMLD
Sbjct: 253 VKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLD 312
Query: 261 MGFEPQIKKILSQVIIGSPDLK 282
MGFEPQI+KI+ Q+ + P ++
Sbjct: 313 MGFEPQIRKIVQQMDMPPPGVR 334
Score = 308 (113.5 bits), Expect = 1.1e-69, Sum P(2) = 1.1e-69
Identities = 65/159 (40%), Positives = 94/159 (59%)
Query: 287 IRQHVDIVSESQKYNKLVKLL----EDIMDGSRIL--IFMDTKKGCDQITRQLRMDGWPA 340
I Q V+ V +S K + L+ LL E+ G + L +F++TKKG D + L ++G+PA
Sbjct: 373 IVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPA 432
Query: 341 LSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHX 400
+IHGD+SQ ER+ L FK G++PI+ ATDVAARGLD+ V +V+N+D P ++DYVH
Sbjct: 433 TTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 492
Query: 401 XXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKV 439
FF N AK L +++EA Q+V
Sbjct: 493 IGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEV 531
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 408 (148.7 bits), Expect = 2.3e-69, Sum P(2) = 2.3e-69
Identities = 82/193 (42%), Positives = 117/193 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G DVP PV +F D+ D + I + + PTP+Q P+ L RDL+ A+TG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG-----PIVLVLAPTRELAVQIQQESTKFGASSKI 201
SGKT A+ P I + + G P ++L+PTRELA QI E+ KF + +
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261
K YGG P Q+R+L++G +I++ATPGRL D+LE +++ + +L LDEADRMLDM
Sbjct: 259 KVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 318
Query: 262 GFEPQIKKILSQV 274
GFEPQI+KI+ Q+
Sbjct: 319 GFEPQIRKIVEQM 331
Score = 318 (117.0 bits), Expect = 2.3e-69, Sum P(2) = 2.3e-69
Identities = 66/160 (41%), Positives = 96/160 (60%)
Query: 287 IRQHVDIVSESQKYNKLVKLLE---DIMDGSRI-LIFMDTKKGCDQITRQLRMDGWPALS 342
I Q V+ V ES K + L+ LL + D + L+F++TK+G D + L M+ +PA S
Sbjct: 378 ITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATS 437
Query: 343 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXX 402
IHGD++Q ER+ L FK G++PI+ ATDVAARGLD+ V +V+N+D P ++DYVH
Sbjct: 438 IHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIG 497
Query: 403 XXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPE 442
FF NA+ A+ L +++EA Q+V PE
Sbjct: 498 RTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEV-PE 536
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 415 (151.1 bits), Expect = 4.3e-69, Sum P(2) = 4.3e-69
Identities = 82/193 (42%), Positives = 122/193 (63%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
I G +VP PV +F ++ + + I + + +PTP+Q P+ L+GRDL+ A+TG
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG-----PIVLVLAPTRELAVQIQQESTKFGASSKI 201
SGKT A+ P I + + G P+ ++L+PTRELA QI E+ KF + +
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266
Query: 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261
K YGG P Q+R+L++GV+I++ATPGRL D+LE +++ + +L LDEADRMLDM
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 326
Query: 262 GFEPQIKKILSQV 274
GFEPQI+KI+ Q+
Sbjct: 327 GFEPQIRKIVEQM 339
Score = 310 (114.2 bits), Expect = 4.3e-69, Sum P(2) = 4.3e-69
Identities = 65/162 (40%), Positives = 98/162 (60%)
Query: 287 IRQHVDIVSESQKYNKLVKLL----EDIMDGSRIL--IFMDTKKGCDQITRQLRMDGWPA 340
I Q V+ V +S K + L+ LL E+ + G + L +F++TK+G D + L ++G+PA
Sbjct: 386 IVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPA 445
Query: 341 LSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHX 400
SIHGD++Q ER+ L FK+G++PI+ ATDVAARGLD+ V +V+N+D P ++DYVH
Sbjct: 446 TSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 505
Query: 401 XXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPE 442
FF N A+ L +++EA Q+V PE
Sbjct: 506 IGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEV-PE 546
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 412 (150.1 bits), Expect = 1.5e-68, Sum P(2) = 1.5e-68
Identities = 89/203 (43%), Positives = 121/203 (59%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G + P ++SF DV + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 168 VEVTGNNCPPHIESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 227
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQQ 190
SGKT A+LLP + + PG+ PI LVLAPTRELAVQI +
Sbjct: 228 SGKTAAFLLPILSQIYTD---GPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYE 284
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250
E+ KF S++ +YGG G Q+RDL++G +++ATPGRL+DM+E L YL
Sbjct: 285 EARKFSYRSRVLPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 344
Query: 251 VLDEADRMLDMGFEPQIKKILSQ 273
VLDEADRMLDMGFEPQI++I+ Q
Sbjct: 345 VLDEADRMLDMGFEPQIRRIIEQ 367
Score = 311 (114.5 bits), Expect = 1.5e-68, Sum P(2) = 1.5e-68
Identities = 67/160 (41%), Positives = 94/160 (58%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V E+ K + L+ LL S L+F++TKKG D + L +G+ SIHGD
Sbjct: 415 ITQKVVWVEEADKRSFLLDLLNATGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 474
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +VK+VIN+D PG +E+YVH
Sbjct: 475 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGR 534
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N +K+L+ +L EA Q+V L M
Sbjct: 535 VGNLGLATSFFNERNINISKDLLDLLVEAKQEVPSWLENM 574
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 410 (149.4 bits), Expect = 2.0e-68, Sum P(2) = 2.0e-68
Identities = 88/203 (43%), Positives = 122/203 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P ++SF DV + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 168 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 227
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQQ 190
SGKT A+LLP + + + PG+ PI LVLAPTRELAVQI +
Sbjct: 228 SGKTAAFLLPILSQIYSD---GPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYE 284
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250
E+ KF S+++ +YGG G Q+RDL++G +++ATPGRL+DM+E L YL
Sbjct: 285 EARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 344
Query: 251 VLDEADRMLDMGFEPQIKKILSQ 273
VLDEADRMLDMGFEPQI++I+ Q
Sbjct: 345 VLDEADRMLDMGFEPQIRRIVEQ 367
Score = 312 (114.9 bits), Expect = 2.0e-68, Sum P(2) = 2.0e-68
Identities = 68/160 (42%), Positives = 93/160 (58%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V ES K + L+ LL S L+F++TKKG D + L +G+ SIHGD
Sbjct: 415 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 474
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 475 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF NA K+L+ +L EA Q+V L M
Sbjct: 535 VGNLGLATSFFNERNANITKDLLDLLVEAKQEVPSWLENM 574
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 417 (151.9 bits), Expect = 3.1e-68, Sum P(2) = 3.1e-68
Identities = 90/203 (44%), Positives = 122/203 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P ++SF DV + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 146 VEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 205
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQQ 190
SGKT A+LLP + + A PGD PI LVLAPTRELAVQI +
Sbjct: 206 SGKTAAFLLPILSQIYAD---GPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYE 262
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250
E+ KF S+++ +YGG G Q+RDL++G +++ATPGRL+DM+E L YL
Sbjct: 263 EARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 322
Query: 251 VLDEADRMLDMGFEPQIKKILSQ 273
VLDEADRMLDMGFEPQI++I+ Q
Sbjct: 323 VLDEADRMLDMGFEPQIRRIVEQ 345
Score = 300 (110.7 bits), Expect = 3.1e-68, Sum P(2) = 3.1e-68
Identities = 66/160 (41%), Positives = 91/160 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V E K + L+ LL S L+F++TKKG D + L +G+ SIHGD
Sbjct: 393 ITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGD 452
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 453 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 512
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L M
Sbjct: 513 VGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 552
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 423 (154.0 bits), Expect = 4.8e-68, Sum P(2) = 4.8e-68
Identities = 87/197 (44%), Positives = 121/197 (61%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G+DVP+P+ F + +M+ I A F +PTP+Q P+ KGRDL+ A+TG
Sbjct: 142 VDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTG 201
Query: 147 SGKTLAYLLPAIVHV----------NAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196
SGKT +L P + AQ F + P LVLAPTRELA QI +E+ KF
Sbjct: 202 SGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFT 261
Query: 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256
S ++ +YGG P G Q+R++ +G ++++ATPGRL D+LE +L + YLVLDEAD
Sbjct: 262 YRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEAD 321
Query: 257 RMLDMGFEPQIKKILSQ 273
RMLDMGFEPQI+ I+ +
Sbjct: 322 RMLDMGFEPQIRHIVEE 338
Score = 288 (106.4 bits), Expect = 4.8e-68, Sum P(2) = 4.8e-68
Identities = 66/162 (40%), Positives = 91/162 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q + V + K + L+ LL G LIF++TK+ DQ+T L M + A +IHGD
Sbjct: 386 ITQRILYVDDMDKKSALLDLLSAEHKGLT-LIFVETKRMADQLTDFLIMQNFKATAIHGD 444
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
++QAER+ LS FKA + I+ AT VAARGLD+ +V +VINYD P ++DYVH
Sbjct: 445 RTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGR 504
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMGR 448
FF + N K L+ IL EA Q+V L+ + R
Sbjct: 505 AGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLSR 546
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 483 (175.1 bits), Expect = 5.0e-68, Sum P(2) = 5.0e-68
Identities = 98/224 (43%), Positives = 147/224 (65%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+T++G +P P++S+ + GFP ++ I K G+ EPTPIQ Q P+ L+ RD+IG+AETG
Sbjct: 382 VTIKGGRIPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETG 441
Query: 147 SGKTLAYLLPAIVHVNAQPFLAP----GDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKTLA+L+P + + + P + GP +++APTRELA QI++E+TKFG I+
Sbjct: 442 SGKTLAFLIPLLSWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIR 501
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+ + GG+ + Q L+ G EIVIATPGRLID+LE+ L + TY+VLDEADRM+DMG
Sbjct: 502 TVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 561
Query: 263 FEPQIKKILSQVIIGS--PDLKANHAIRQHVDIVSESQKYNKLV 304
FEP ++KIL + + + PD + + ++ +KY + V
Sbjct: 562 FEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTV 605
Score = 239 (89.2 bits), Expect = 5.0e-68, Sum P(2) = 5.0e-68
Identities = 50/126 (39%), Positives = 77/126 (61%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V IGS K Q V ++ E+ K KL+++L +D ++IF++ KKG D + + L
Sbjct: 629 VYIGSVG-KPTERTEQIVYMMGENDKRKKLMEILSRKIDPP-VIIFVNQKKGADVLAKGL 686
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
G+ + ++HG K Q +R++ L+ K+G I+ ATDVA RG+D+KDV VINYD +
Sbjct: 687 EKLGYNSCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKT 746
Query: 394 LEDYVH 399
+EDY H
Sbjct: 747 IEDYTH 752
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 409 (149.0 bits), Expect = 5.1e-68, Sum P(2) = 5.1e-68
Identities = 88/203 (43%), Positives = 121/203 (59%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P ++SF DV + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 166 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 225
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQQ 190
SGKT A+LLP + + PG+ PI LVLAPTRELAVQI +
Sbjct: 226 SGKTAAFLLPILSQIYTD---GPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYE 282
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250
E+ KF S+++ +YGG G Q+RDL++G +++ATPGRL+DM+E L YL
Sbjct: 283 EARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 342
Query: 251 VLDEADRMLDMGFEPQIKKILSQ 273
VLDEADRMLDMGFEPQI++I+ Q
Sbjct: 343 VLDEADRMLDMGFEPQIRRIVEQ 365
Score = 309 (113.8 bits), Expect = 5.1e-68, Sum P(2) = 5.1e-68
Identities = 67/160 (41%), Positives = 93/160 (58%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V E+ K + L+ LL S IL+F++TKKG D + L +G+ SIHGD
Sbjct: 413 ITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGD 472
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 473 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 532
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L M
Sbjct: 533 VGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 572
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 409 (149.0 bits), Expect = 5.2e-68, Sum P(2) = 5.2e-68
Identities = 88/203 (43%), Positives = 121/203 (59%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P ++SF DV + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 167 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 226
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQQ 190
SGKT A+LLP + + PG+ PI LVLAPTRELAVQI +
Sbjct: 227 SGKTAAFLLPILSQIYTD---GPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYE 283
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250
E+ KF S+++ +YGG G Q+RDL++G +++ATPGRL+DM+E L YL
Sbjct: 284 EARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 343
Query: 251 VLDEADRMLDMGFEPQIKKILSQ 273
VLDEADRMLDMGFEPQI++I+ Q
Sbjct: 344 VLDEADRMLDMGFEPQIRRIVEQ 366
Score = 309 (113.8 bits), Expect = 5.2e-68, Sum P(2) = 5.2e-68
Identities = 67/160 (41%), Positives = 93/160 (58%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V E+ K + L+ LL S IL+F++TKKG D + L +G+ SIHGD
Sbjct: 414 ITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGD 473
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 474 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 533
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L M
Sbjct: 534 VGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 573
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 410 (149.4 bits), Expect = 6.7e-68, Sum P(2) = 6.7e-68
Identities = 88/203 (43%), Positives = 122/203 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P ++SF DV + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 167 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 226
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQQ 190
SGKT A+LLP + + + PG+ PI LVLAPTRELAVQI +
Sbjct: 227 SGKTAAFLLPILSQIYSD---GPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYE 283
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250
E+ KF S+++ +YGG G Q+RDL++G +++ATPGRL+DM+E L YL
Sbjct: 284 EARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 343
Query: 251 VLDEADRMLDMGFEPQIKKILSQ 273
VLDEADRMLDMGFEPQI++I+ Q
Sbjct: 344 VLDEADRMLDMGFEPQIRRIVEQ 366
Score = 307 (113.1 bits), Expect = 6.7e-68, Sum P(2) = 6.7e-68
Identities = 67/160 (41%), Positives = 92/160 (57%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V ES K + L+ LL S L+F++TKKG D + L +G+ SIHGD
Sbjct: 414 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 473
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 474 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 533
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L M
Sbjct: 534 VGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 573
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 410 (149.4 bits), Expect = 6.8e-68, Sum P(2) = 6.8e-68
Identities = 88/203 (43%), Positives = 122/203 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P ++SF DV + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 168 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 227
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQQ 190
SGKT A+LLP + + + PG+ PI LVLAPTRELAVQI +
Sbjct: 228 SGKTAAFLLPILSQIYSD---GPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYE 284
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250
E+ KF S+++ +YGG G Q+RDL++G +++ATPGRL+DM+E L YL
Sbjct: 285 EARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 344
Query: 251 VLDEADRMLDMGFEPQIKKILSQ 273
VLDEADRMLDMGFEPQI++I+ Q
Sbjct: 345 VLDEADRMLDMGFEPQIRRIVEQ 367
Score = 307 (113.1 bits), Expect = 6.8e-68, Sum P(2) = 6.8e-68
Identities = 67/160 (41%), Positives = 92/160 (57%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V ES K + L+ LL S L+F++TKKG D + L +G+ SIHGD
Sbjct: 415 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 474
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 475 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L M
Sbjct: 535 VGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 574
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 410 (149.4 bits), Expect = 6.8e-68, Sum P(2) = 6.8e-68
Identities = 88/203 (43%), Positives = 122/203 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P ++SF DV + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 168 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 227
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQQ 190
SGKT A+LLP + + + PG+ PI LVLAPTRELAVQI +
Sbjct: 228 SGKTAAFLLPILSQIYSD---GPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYE 284
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250
E+ KF S+++ +YGG G Q+RDL++G +++ATPGRL+DM+E L YL
Sbjct: 285 EARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 344
Query: 251 VLDEADRMLDMGFEPQIKKILSQ 273
VLDEADRMLDMGFEPQI++I+ Q
Sbjct: 345 VLDEADRMLDMGFEPQIRRIVEQ 367
Score = 307 (113.1 bits), Expect = 6.8e-68, Sum P(2) = 6.8e-68
Identities = 67/160 (41%), Positives = 92/160 (57%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V ES K + L+ LL S L+F++TKKG D + L +G+ SIHGD
Sbjct: 415 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 474
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 475 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L M
Sbjct: 535 VGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 574
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 304 (112.1 bits), Expect = 1.0e-67, Sum P(3) = 1.0e-67
Identities = 58/101 (57%), Positives = 75/101 (74%)
Query: 173 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232
PI LVLAPTRELA+QI E+ KF S+++ +YGG G Q+RDL++G +++ATPGR
Sbjct: 315 PISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 374
Query: 233 LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273
L+DM+E L YLVLDEADRMLDMGFEPQI++I+ Q
Sbjct: 375 LVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQ 415
Score = 298 (110.0 bits), Expect = 1.0e-67, Sum P(3) = 1.0e-67
Identities = 63/153 (41%), Positives = 90/153 (58%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V E+ K + L+ LL S L+F++TKKG D + L +G+ SIHGD
Sbjct: 463 ITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGD 522
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++G+ PIM AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 523 RSQRDREEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 582
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKV 439
F+ N+ K+L+ IL EA Q+V
Sbjct: 583 VGNLGLATSFYNDKNSNITKDLLDILVEAKQEV 615
Score = 143 (55.4 bits), Expect = 1.0e-67, Sum P(3) = 1.0e-67
Identities = 34/118 (28%), Positives = 56/118 (47%)
Query: 54 DGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQE 113
D P N +E +A + + G + P ++SF DV + +M
Sbjct: 178 DWSKPMPPNERLEHELFSASNTGINFEKYDDIPVEATGTNSPGHIESFHDVDMGEIIMGN 237
Query: 114 ISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171
I+ + + PTP+Q P+ RDL+ A+TGSGKT A+LLP + + ++ PG+
Sbjct: 238 ITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIYSE---GPGE 292
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 413 (150.4 bits), Expect = 1.3e-67, Sum P(2) = 1.3e-67
Identities = 89/203 (43%), Positives = 122/203 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P ++SF DV + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 168 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 227
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQQ 190
SGKT A+LLP + + A PG+ PI LVLAPTRELAVQI +
Sbjct: 228 SGKTAAFLLPILSQIYAD---GPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYE 284
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250
E+ KF S+++ +YGG G Q+RDL++G +++ATPGRL+DM+E L YL
Sbjct: 285 EARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 344
Query: 251 VLDEADRMLDMGFEPQIKKILSQ 273
VLDEADRMLDMGFEPQI++I+ Q
Sbjct: 345 VLDEADRMLDMGFEPQIRRIVEQ 367
Score = 301 (111.0 bits), Expect = 1.3e-67, Sum P(2) = 1.3e-67
Identities = 66/160 (41%), Positives = 91/160 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V E K + L+ LL S L+F++TKKG D + L +G+ SIHGD
Sbjct: 415 ITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 474
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 475 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L M
Sbjct: 535 VGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 574
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 413 (150.4 bits), Expect = 1.3e-67, Sum P(2) = 1.3e-67
Identities = 89/203 (43%), Positives = 122/203 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P ++SF DV + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 168 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 227
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQQ 190
SGKT A+LLP + + A PG+ PI LVLAPTRELAVQI +
Sbjct: 228 SGKTAAFLLPILSQIYAD---GPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYE 284
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250
E+ KF S+++ +YGG G Q+RDL++G +++ATPGRL+DM+E L YL
Sbjct: 285 EARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 344
Query: 251 VLDEADRMLDMGFEPQIKKILSQ 273
VLDEADRMLDMGFEPQI++I+ Q
Sbjct: 345 VLDEADRMLDMGFEPQIRRIVEQ 367
Score = 301 (111.0 bits), Expect = 1.3e-67, Sum P(2) = 1.3e-67
Identities = 66/160 (41%), Positives = 91/160 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V E K + L+ LL S L+F++TKKG D + L +G+ SIHGD
Sbjct: 415 ITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 474
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 475 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L M
Sbjct: 535 VGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 574
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 411 (149.7 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 89/201 (44%), Positives = 123/201 (61%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P ++SF DV + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 144 VEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 203
Query: 147 SGKTLAYLLPAIVHVNAQ-P-----FLAPGDG--------PIVLVLAPTRELAVQIQQES 192
SGKT A+LLP + + A P + +G PI LVLAPTRELAVQI +E+
Sbjct: 204 SGKTAAFLLPILSQIYADGPGDALRAMKATNGRYGRRKQYPISLVLAPTRELAVQIYEEA 263
Query: 193 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252
KF S+++ +YGG G Q+RDL++G +++ATPGRL+DM+E L YLVL
Sbjct: 264 RKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVL 323
Query: 253 DEADRMLDMGFEPQIKKILSQ 273
DEADRMLDMGFEPQI++I+ Q
Sbjct: 324 DEADRMLDMGFEPQIRRIVEQ 344
Score = 300 (110.7 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 66/160 (41%), Positives = 91/160 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V E K + L+ LL S L+F++TKKG D + L +G+ SIHGD
Sbjct: 392 ITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGD 451
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 452 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 511
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L M
Sbjct: 512 VGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 551
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 410 (149.4 bits), Expect = 2.2e-67, Sum P(2) = 2.2e-67
Identities = 88/203 (43%), Positives = 122/203 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P ++SF DV + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 210 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 269
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQQ 190
SGKT A+LLP + + + PG+ PI LVLAPTRELAVQI +
Sbjct: 270 SGKTAAFLLPILSQIYSD---GPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYE 326
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250
E+ KF S+++ +YGG G Q+RDL++G +++ATPGRL+DM+E L YL
Sbjct: 327 EARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 386
Query: 251 VLDEADRMLDMGFEPQIKKILSQ 273
VLDEADRMLDMGFEPQI++I+ Q
Sbjct: 387 VLDEADRMLDMGFEPQIRRIVEQ 409
Score = 305 (112.4 bits), Expect = 2.2e-67, Sum P(2) = 2.2e-67
Identities = 68/162 (41%), Positives = 93/162 (57%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQLRMDGWPALSIH 344
I Q V V ES K + L+ LL G S L+F++TKKG D + L +G+ SIH
Sbjct: 457 ITQKVVWVEESDKRSFLLDLLNATESGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIH 516
Query: 345 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXX 404
GD+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 517 GDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT 576
Query: 405 XXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L M
Sbjct: 577 GRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 618
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 301 (111.0 bits), Expect = 2.2e-67, Sum P(3) = 2.2e-67
Identities = 58/101 (57%), Positives = 74/101 (73%)
Query: 173 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232
PI LVLAPTRELA+QI E+ KF S ++ +YGG G Q+RDL++G +++ATPGR
Sbjct: 299 PISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 358
Query: 233 LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273
L+DM+E L YLVLDEADRMLDMGFEPQI++I+ Q
Sbjct: 359 LLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQ 399
Score = 298 (110.0 bits), Expect = 2.2e-67, Sum P(3) = 2.2e-67
Identities = 64/160 (40%), Positives = 92/160 (57%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V E+ K + L+ LL S L+F++TKKG D + L +G+ SIHGD
Sbjct: 447 ITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGD 506
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++G+ PI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 507 RSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 566
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ IL EA Q+V L ++
Sbjct: 567 VGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESL 606
Score = 142 (55.0 bits), Expect = 2.2e-67, Sum P(3) = 2.2e-67
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P+P+ F D+ + +M I+ + + PTP+Q P+ RDL+ A+TG
Sbjct: 196 VEATGHNGPQPIDRFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTG 255
Query: 147 SGKTLAYLLPAIVHV 161
SGKT A+LLP + +
Sbjct: 256 SGKTAAFLLPVLSQI 270
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 412 (150.1 bits), Expect = 1.0e-66, Sum P(2) = 1.0e-66
Identities = 88/203 (43%), Positives = 122/203 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P+ ++SF DV + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 169 VEATGNNCPRHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 228
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQQ 190
SGKT A+LLP + + PG+ PI LVLAPTRELAVQI +
Sbjct: 229 SGKTAAFLLPILSQIYTD---GPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYE 285
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250
E+ KF S+++ +YGG G Q+RDL++G +++ATPGRL+DM+E L YL
Sbjct: 286 EARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 345
Query: 251 VLDEADRMLDMGFEPQIKKILSQ 273
VLDEADRMLDMGFEPQI++I+ Q
Sbjct: 346 VLDEADRMLDMGFEPQIRRIVEQ 368
Score = 294 (108.6 bits), Expect = 1.0e-66, Sum P(2) = 1.0e-66
Identities = 67/163 (41%), Positives = 92/163 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V ES K + L+ LL S L+F++TKKG D + L +G+ SIHGD
Sbjct: 416 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 475
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 476 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 535
Query: 407 XXXXXX---XXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L M
Sbjct: 536 VGNLGLIGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 578
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 500 (181.1 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 102/217 (47%), Positives = 133/217 (61%)
Query: 59 FEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKAG 118
F KNFY E + + + V G P+PV SF F +M+ I K+
Sbjct: 225 FNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEAIRKSE 284
Query: 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178
+ +PTPIQA P AL GRD++GIA+TGSGKT AYL PAIVH+ QP L G+GP+ +++
Sbjct: 285 YEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVAVIV 344
Query: 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDML 237
PTRELA+Q+ QE+ KF I C YGG K Q +LQ +G E+V+ TPGR+ID++
Sbjct: 345 VPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQNEGAEMVVCTPGRIIDLV 404
Query: 238 ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
+ TN R T+LV DEADRM DMGFE Q+K I V
Sbjct: 405 KMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHV 441
Score = 206 (77.6 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 49/163 (30%), Positives = 84/163 (51%)
Query: 282 KANHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPA 340
+AN I Q V ++ ++ K + L++ L + ++LIF+ K + + ++L+M +
Sbjct: 479 EANADIEQKVFVMQNQDVKLHWLIRNLVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDI 538
Query: 341 LSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHX 400
+ +HGD QAER+ L +F+ KS I+ ATDVAARGLD+ +++ VIN+D ++ +VH
Sbjct: 539 VLLHGDMLQAERNENLLKFRK-KSQILVATDVAARGLDISEIRTVINFDMARDIDTHVHR 597
Query: 401 XXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
T + L+ LE Q+V L
Sbjct: 598 IGRTGRAGHKGTAYTLVTEKDIEMVGHLVKNLESVSQEVPKPL 640
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 397 (144.8 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 93/214 (43%), Positives = 129/214 (60%)
Query: 63 FYVESPSVAAMSXXXXXXXXXXXXITVEGR-DVP-KPVKSFRDVGFPDYVMQEISKAGFF 120
FYV+S ++ ++ I VE D+ +P+ SF + + EISK F
Sbjct: 76 FYVQSEALTSLPQSDIDEYFKENEIAVEDSLDLALRPLLSFDYLSLDSSIQAEISK--FP 133
Query: 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHV-NAQPFLAPGDGPIVLVLA 179
+PTPIQA WP L G+D++G+AETGSGKT A+ +PAI H+ N Q G VLV++
Sbjct: 134 KPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQK----KRGIQVLVIS 189
Query: 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES 239
PTRELA QI ++ C+YGGVPK Q L+K ++V+ATPGRL+D+L+
Sbjct: 190 PTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQE 248
Query: 240 HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273
+ +L +V YLVLDEADRML+ GFE IK I+ +
Sbjct: 249 GSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRE 282
Score = 296 (109.3 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 71/180 (39%), Positives = 98/180 (54%)
Query: 273 QVIIGSPD-LKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG----SRILIFMDTKKGCD 327
+V IG+ D L AN I Q V++V K KL++LL+ G ++LIF KK
Sbjct: 314 KVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAA 373
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
++ R L+ +G+ +IHGD SQ +R L+EFK+GKS ++ ATDVAARGLD+ +VK VIN
Sbjct: 374 RVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVIN 433
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMG 447
FP ++EDYVH FT A L+ +L A Q V +L G
Sbjct: 434 LTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFG 493
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 404 (147.3 bits), Expect = 1.2e-65, Sum P(2) = 1.2e-65
Identities = 88/204 (43%), Positives = 123/204 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAET 145
+ G + P +++F D+ + +M I + PTP+Q P+ +KG RDL+ A+T
Sbjct: 163 VEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPI-IKGKRDLMACAQT 221
Query: 146 GSGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQ 189
GSGKT A+LLP + + PG+ PI LVLAPTRELAVQI
Sbjct: 222 GSGKTAAFLLPILSQIYTD---GPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIY 278
Query: 190 QESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 249
+E+ KF S+++ +YGG G Q+RDL++G +++ATPGRL+DM+E L Y
Sbjct: 279 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 338
Query: 250 LVLDEADRMLDMGFEPQIKKILSQ 273
LVLDEADRMLDMGFEPQI++I+ Q
Sbjct: 339 LVLDEADRMLDMGFEPQIRRIVEQ 362
Score = 292 (107.8 bits), Expect = 1.2e-65, Sum P(2) = 1.2e-65
Identities = 63/160 (39%), Positives = 91/160 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V + K + L+ +L S L+F++TKKG D + L +G+ SIHGD
Sbjct: 410 ITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 469
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +V++VIN+D P +E+YVH
Sbjct: 470 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGR 529
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L M
Sbjct: 530 VGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENM 569
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 404 (147.3 bits), Expect = 1.2e-65, Sum P(2) = 1.2e-65
Identities = 88/204 (43%), Positives = 123/204 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAET 145
+ G + P +++F D+ + +M I + PTP+Q P+ +KG RDL+ A+T
Sbjct: 166 VEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPI-IKGKRDLMACAQT 224
Query: 146 GSGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQ 189
GSGKT A+LLP + + PG+ PI LVLAPTRELAVQI
Sbjct: 225 GSGKTAAFLLPILSQIYTD---GPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIY 281
Query: 190 QESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 249
+E+ KF S+++ +YGG G Q+RDL++G +++ATPGRL+DM+E L Y
Sbjct: 282 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 341
Query: 250 LVLDEADRMLDMGFEPQIKKILSQ 273
LVLDEADRMLDMGFEPQI++I+ Q
Sbjct: 342 LVLDEADRMLDMGFEPQIRRIVEQ 365
Score = 292 (107.8 bits), Expect = 1.2e-65, Sum P(2) = 1.2e-65
Identities = 63/160 (39%), Positives = 91/160 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V + K + L+ +L S L+F++TKKG D + L +G+ SIHGD
Sbjct: 413 ITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 472
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++GKSPI+ AT VAARGLD+ +V++VIN+D P +E+YVH
Sbjct: 473 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGR 532
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L M
Sbjct: 533 VGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENM 572
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 429 (156.1 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 95/198 (47%), Positives = 126/198 (63%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G VP ++ F + GF VM+ ++++G+ +PTP+Q P L RDL+ A+TG
Sbjct: 127 VEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTG 186
Query: 147 SGKTLAYLLPAIVHVNAQ-PFLA--PG--DG-----PIVLVLAPTRELAVQIQQESTKFG 196
SGKT A+LLP I H+ A P + P +G P LVL+PTRELA+QI +E+TKF
Sbjct: 187 SGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFS 246
Query: 197 ASSKIKSTCIYGGVPK-GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 255
S I++ +YGG QV L+ G I+IATPGRLID++E L YLVLDEA
Sbjct: 247 YKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEA 306
Query: 256 DRMLDMGFEPQIKKILSQ 273
DRMLDMGFEPQI+KI+ Q
Sbjct: 307 DRMLDMGFEPQIRKIVGQ 324
Score = 261 (96.9 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 59/166 (35%), Positives = 96/166 (57%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q + V+E +K + L+++L + + +L+F++TK+G +++ L ++SIHGD
Sbjct: 372 IEQRLLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGD 431
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
Q ER+ L F++G+ PI+ AT VAARGLD+ +V++VINYD PG ++YVH
Sbjct: 432 LKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGR 491
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPE----LAAMGR 448
FF N ++L ++ E+ Q+V PE +AA GR
Sbjct: 492 CGNLGIATSFFNDKNRGIGRDLKNLIVESNQEV-PEWLHQVAAEGR 536
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 398 (145.2 bits), Expect = 5.9e-65, Sum P(2) = 5.9e-65
Identities = 85/203 (41%), Positives = 120/203 (59%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P +++F D+ + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 167 VEATGNNCPPHIENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 226
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQQ 190
SGKT A+LLP + + PG+ PI LVLAPTRELAVQI +
Sbjct: 227 SGKTAAFLLPILSQIYTD---GPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYE 283
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250
E+ KF S+++ +YGG Q+RDL++G +++ATPGRL+DM+E L YL
Sbjct: 284 EARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 343
Query: 251 VLDEADRMLDMGFEPQIKKILSQ 273
VLDEADRMLDMGFEPQI++I+ Q
Sbjct: 344 VLDEADRMLDMGFEPQIRRIVEQ 366
Score = 292 (107.8 bits), Expect = 5.9e-65, Sum P(2) = 5.9e-65
Identities = 63/160 (39%), Positives = 90/160 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V E K + L+ LL S L+F++TKKG D + L + + SIHGD
Sbjct: 414 ITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGD 473
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++G+ PI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 474 RSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 533
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L +M
Sbjct: 534 VGNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSWLESM 573
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 400 (145.9 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
Identities = 84/195 (43%), Positives = 119/195 (61%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G+DVP+P+ F +++ I A F +PTP+Q P+ GRDL+ A+TG
Sbjct: 130 VDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTG 189
Query: 147 SGKTLAYLLPAIVHV-----NAQP-----FLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196
SGKT +L P + + QP F P +++APTRELA QI E+ KF
Sbjct: 190 SGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFT 249
Query: 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256
S +K+ +YGG P G Q+R++++G ++++ATPGRL D+LE +L V YLVLDEAD
Sbjct: 250 YRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEAD 309
Query: 257 RMLDMGFEPQIKKIL 271
RMLDMGFEPQI+ I+
Sbjct: 310 RMLDMGFEPQIRHIV 324
Score = 284 (105.0 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
Identities = 66/167 (39%), Positives = 92/167 (55%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V K + L+ LL DG LIF++TK+ DQ+T L M + A +IHGD
Sbjct: 374 ITQKVLYVENQDKKSALLDLLSASTDGLT-LIFVETKRMADQLTDFLIMQNFRATAIHGD 432
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
++Q+ER+ L+ F++G + ++ AT VAARGLD+ +V +VINYD P ++DYVH
Sbjct: 433 RTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGR 492
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPPS 453
FF + N+ K L IL EA Q+V L AP S
Sbjct: 493 AGNTGLATAFFNSENSNIVKGLHEILTEANQEVPSFLKDAMMSAPGS 539
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 409 (149.0 bits), Expect = 1.0e-64, Sum P(2) = 1.0e-64
Identities = 83/188 (44%), Positives = 124/188 (65%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
I+ +G +P+P++S+ + +++ + +AG+ +P+PIQ P+ L+ RD+IGIAETG
Sbjct: 301 ISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETG 360
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPG---DGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 203
SGKT A++LP + +++ P ++ +GP +V+APTRELA QI++E+ KF +
Sbjct: 361 SGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRV 420
Query: 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263
T I GG Q + +G EIVIATPGRLID LE L + Y+VLDEADRM+DMGF
Sbjct: 421 TSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGF 480
Query: 264 EPQIKKIL 271
EPQ+ +L
Sbjct: 481 EPQVAGVL 488
Score = 282 (104.3 bits), Expect = 1.0e-64, Sum P(2) = 1.0e-64
Identities = 69/210 (32%), Positives = 106/210 (50%)
Query: 238 ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ---VIIGSPDLKANHAIRQHVDIV 294
E + R TY+ + G E +K L V IG+ K I QHV ++
Sbjct: 504 ELDEKKIYRTTYMF----SATMPPGVERLARKYLRNPVVVTIGTAG-KTTDLISQHVIMM 558
Query: 295 SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDW 354
ES+K+ +L KLL+++ + + I +F++TKK CD I + L G+ ++HG KSQ +R+
Sbjct: 559 KESEKFFRLQKLLDELGEKTAI-VFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREI 617
Query: 355 VLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXX 414
L F+A + ++ ATDV RG+D+ DV +VINYD P +E Y H
Sbjct: 618 SLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVAT 677
Query: 415 XFFTAANARFAKELITILEEAGQKVSPELA 444
F T + +L +L ++ V PELA
Sbjct: 678 SFLTLHDTEVFYDLKQMLVQSNSAVPPELA 707
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 492 (178.3 bits), Expect = 4.1e-64, Sum P(2) = 4.1e-64
Identities = 104/238 (43%), Positives = 150/238 (63%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
IT +G +P P++S++D P ++++ I K G+ EPTPIQ Q P+ L+ RD+IG+AETG
Sbjct: 379 ITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETG 438
Query: 147 SGKTLAYLLPAIVHVNAQPFL---APGD-GPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKT A+L+P +V + P + D GP ++LAPTRELA QI++E+ KFG I+
Sbjct: 439 SGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIR 498
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+ GG+ + Q L+ G EIVIATPGRLID+LE+ L R TY+VLDEADRM+DMG
Sbjct: 499 PVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMG 558
Query: 263 FEPQIKKILSQVIIGS--PDL-KANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRIL 317
FEP ++KIL + + + PD +A + + S KY + + L +R+L
Sbjct: 559 FEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTLPCLSTPPIPTRLL 616
Score = 191 (72.3 bits), Expect = 4.1e-64, Sum P(2) = 4.1e-64
Identities = 45/135 (33%), Positives = 64/135 (47%)
Query: 314 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 373
SR L + + C T + A ++HG K Q +R++ LS KAG I+ ATDVA
Sbjct: 647 SRSLCCVLPRAHCSFFTSPF-FQQYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVA 705
Query: 374 ARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELI-TIL 432
RG+D++DV V+NYD ++EDY+H F T ++ EL IL
Sbjct: 706 GRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAIL 765
Query: 433 EEAGQKVSPELAAMG 447
E + P L G
Sbjct: 766 ESPVSAIPPALEKQG 780
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 391 (142.7 bits), Expect = 4.3e-64, Sum P(2) = 4.3e-64
Identities = 85/203 (41%), Positives = 119/203 (58%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G + P +++F DV + +M I + PTP+Q P+ + RDL+ A+TG
Sbjct: 161 VEATGNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 220
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG----------------PIVLVLAPTRELAVQIQQ 190
SG T A+LLP + + PG+ PI LVLAPTRELAVQI +
Sbjct: 221 SGCTAAFLLPILSQIYTD---GPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYE 277
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250
E+ KF S+++ +YGG Q+RDL++G +++ATPGRL+DM+E L YL
Sbjct: 278 EARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 337
Query: 251 VLDEADRMLDMGFEPQIKKILSQ 273
VLDEADRMLDMGFEPQI++I+ Q
Sbjct: 338 VLDEADRMLDMGFEPQIRRIVEQ 360
Score = 291 (107.5 bits), Expect = 4.3e-64, Sum P(2) = 4.3e-64
Identities = 63/160 (39%), Positives = 90/160 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V E K + L+ LL S L+F++TKKG D + L + + SIHGD
Sbjct: 408 ITQKVVWVEELDKRSFLLDLLNATGRDSLTLVFVETKKGADSLENFLFQERYACTSIHGD 467
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ +R+ L +F++G+ PI+ AT VAARGLD+ +VK+VIN+D P +E+YVH
Sbjct: 468 RSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 527
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N K+L+ +L EA Q+V L +M
Sbjct: 528 VGNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSWLESM 567
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 473 (171.6 bits), Expect = 6.5e-64, Sum P(2) = 6.5e-64
Identities = 99/222 (44%), Positives = 144/222 (64%)
Query: 59 FEKNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGRDVPKPVKSFRDVGFPDYVMQEI-SK 116
F K FY E+ ++A+S I V+G DVP+P+ + + P + I K
Sbjct: 252 FRKVFYREAYELSALSDEQVELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDK 311
Query: 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176
F +P+ IQ+Q P L GRD+IGIA+TGSGKTL+Y+LP + H+ Q F GPI L
Sbjct: 312 LKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPIGL 371
Query: 177 VLAPTRELAVQIQQESTKFGA-SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID 235
+L+PTRELA+QI++E F ++ ++ C YGG Q+ +L+KGVEI++ TPGR+ID
Sbjct: 372 ILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVID 431
Query: 236 MLESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
+L +++ NL+R T++VLDEADRM D+GFEPQ+ KIL+Q+
Sbjct: 432 LLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQI 473
Score = 213 (80.0 bits), Expect = 6.5e-64, Sum P(2) = 6.5e-64
Identities = 59/197 (29%), Positives = 99/197 (50%)
Query: 264 EPQIKKILSQ---VIIGSPDLKANHAIRQHVDI----VSESQKYNKL-VKLLEDIMDG-- 313
E K+IL+ +I+G + A I+Q V + E KY + V+ L DI+
Sbjct: 491 ETLAKQILTDPVVIIVGGISVVAPE-IKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQ 549
Query: 314 -----SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI-- 366
S+IL+F + + D++ L + +PA++IHG K Q +R + + EF + S I
Sbjct: 550 IEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINI 609
Query: 367 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAK 426
+ AT +AARGLDV+++ VIN+D P +EDYVH F +++ +
Sbjct: 610 LIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVF 669
Query: 427 ELITILEEAGQKVSPEL 443
L+ L+ + + P+L
Sbjct: 670 NLVKALKLSHSDIDPKL 686
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 473 (171.6 bits), Expect = 6.5e-64, Sum P(2) = 6.5e-64
Identities = 99/222 (44%), Positives = 144/222 (64%)
Query: 59 FEKNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGRDVPKPVKSFRDVGFPDYVMQEI-SK 116
F K FY E+ ++A+S I V+G DVP+P+ + + P + I K
Sbjct: 252 FRKVFYREAYELSALSDEQVELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDK 311
Query: 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176
F +P+ IQ+Q P L GRD+IGIA+TGSGKTL+Y+LP + H+ Q F GPI L
Sbjct: 312 LKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPIGL 371
Query: 177 VLAPTRELAVQIQQESTKFGA-SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID 235
+L+PTRELA+QI++E F ++ ++ C YGG Q+ +L+KGVEI++ TPGR+ID
Sbjct: 372 ILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVID 431
Query: 236 MLESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
+L +++ NL+R T++VLDEADRM D+GFEPQ+ KIL+Q+
Sbjct: 432 LLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQI 473
Score = 213 (80.0 bits), Expect = 6.5e-64, Sum P(2) = 6.5e-64
Identities = 59/197 (29%), Positives = 99/197 (50%)
Query: 264 EPQIKKILSQ---VIIGSPDLKANHAIRQHVDI----VSESQKYNKL-VKLLEDIMDG-- 313
E K+IL+ +I+G + A I+Q V + E KY + V+ L DI+
Sbjct: 491 ETLAKQILTDPVVIIVGGISVVAPE-IKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQ 549
Query: 314 -----SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI-- 366
S+IL+F + + D++ L + +PA++IHG K Q +R + + EF + S I
Sbjct: 550 IEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINI 609
Query: 367 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAK 426
+ AT +AARGLDV+++ VIN+D P +EDYVH F +++ +
Sbjct: 610 LIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVF 669
Query: 427 ELITILEEAGQKVSPEL 443
L+ L+ + + P+L
Sbjct: 670 NLVKALKLSHSDIDPKL 686
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 400 (145.9 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 84/197 (42%), Positives = 123/197 (62%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G DVP+PV +F + D+++ I+ A + PTP+Q P+ + GRDL+ A+TG
Sbjct: 174 VEASGHDVPEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTG 233
Query: 147 SGKTLAYLLPAI--VHVN---AQPFLAPGD-G------PIVLVLAPTRELAVQIQQESTK 194
SGKT +L P + + N A P A G G P L+LAPTREL QI E+ K
Sbjct: 234 SGKTGGFLFPILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARK 293
Query: 195 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254
F S ++ +YGG G Q+R +++G ++++ATPGRL+D++E +L + YL+LDE
Sbjct: 294 FAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDE 353
Query: 255 ADRMLDMGFEPQIKKIL 271
ADRMLDMGFEPQI++I+
Sbjct: 354 ADRMLDMGFEPQIRRIV 370
Score = 278 (102.9 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 60/162 (37%), Positives = 91/162 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V+ V + K + L+ +L LIF++TK+ D ++ L +PA +IHGD
Sbjct: 420 ITQKVEYVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGD 479
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
++Q ER+ L F++G+ PI+ AT VAARGLD+ +V +VINYD P ++DYVH
Sbjct: 480 RTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGR 539
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMGR 448
FF N ++LI +L+EA Q+V L ++ R
Sbjct: 540 AGNTGIATAFFNRGNRGVVRDLIDLLKEAHQEVPSFLESIAR 581
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 375 (137.1 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 80/198 (40%), Positives = 117/198 (59%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G D+ +PV F +++Q I +G+ +PTP+Q P+ GRDL+ A+TG
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 147 SGKTLAYLLPAI-VHVNAQPFLAPGD-----G-------PIVLVLAPTRELAVQIQQEST 193
SGKT +L P + + + P P D G P L+LAPTREL QI +ES
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 194 KFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253
KF S ++ +YGG Q+R + +G +++ ATPGRL+D+++ +L + +LVLD
Sbjct: 277 KFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLD 336
Query: 254 EADRMLDMGFEPQIKKIL 271
EADRMLDMGFEPQI+ I+
Sbjct: 337 EADRMLDMGFEPQIRHIV 354
Score = 301 (111.0 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 66/162 (40%), Positives = 93/162 (57%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V V +S+K + L+ +L + LIF++TK+ D +T L +PA SIHGD
Sbjct: 404 ITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGD 463
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
++Q ER+ L F++G++ IM AT VA+RGLD+ +V +VINYD P ++DYVH
Sbjct: 464 RTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGR 523
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMGR 448
FF N AKELI +L+EA Q+ L AM R
Sbjct: 524 AGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMAR 565
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 648 (233.2 bits), Expect = 5.2e-63, P = 5.2e-63
Identities = 145/401 (36%), Positives = 228/401 (56%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKA 117
PF KNFY+E ++ M+ + V G+DVP+P++ + G ++ + K
Sbjct: 355 PFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKL 414
Query: 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177
+ +P PIQAQ P+ + GRD IG+A+TGSGKTL ++LP + H+ QP + GDGPI LV
Sbjct: 415 NYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLV 474
Query: 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML 237
+APTREL QI + KF + I +YGG Q+ +L++G EIV+ TPGR+ID+L
Sbjct: 475 MAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 534
Query: 238 ESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIV 294
+ + TNLRRVTYLV+DEADRM DMGFEPQI +I+ + + + + V+ +
Sbjct: 535 CTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETL 594
Query: 295 SESQKYNKLVKLL---EDIMDGSRILIFMDTKKGCDQITRQLRMDG-W--PALSIHGDKS 348
+ + NK V++ +++ I ++ + ++ +R L + G W + +S
Sbjct: 595 AR-KVLNKPVEIQVGGRSVVNKD-ITQLVEIRPESERFSRLLELLGEWYEKGKVLVFVRS 652
Query: 349 QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXX 408
Q E+ +S+FK+ ++ AT VAARGLDVK+++ V+N+D P EDYVH
Sbjct: 653 Q-EKS--ISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAG 709
Query: 409 XXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMGRG 449
F + +A++A +L+ LE + Q V ++ A+ G
Sbjct: 710 RKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDVKAVAEG 750
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 388 (141.6 bits), Expect = 7.0e-63, Sum P(2) = 7.0e-63
Identities = 88/213 (41%), Positives = 125/213 (58%)
Query: 64 YVESPSVAAMSXXXXXXXXXXXXITVEGRDVP--KPVKSFRDVGFPDYVMQEISKAGFFE 121
Y +S ++++S ITVE +P+ SF V + ++SK F +
Sbjct: 118 YTQSSKLSSVSQSDIDKFLSDNEITVEDPSSSSLRPILSFDQVQLTSAITSKLSK--FDK 175
Query: 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI--VLVLA 179
PTPIQ+ WP L G+D+IG+AETGSGKT A+ +PAI ++ + G+ VL ++
Sbjct: 176 PTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNI-----ITTGNTKTLSVLCIS 230
Query: 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES 239
PTRELA+QI + A S + +YGGV K Q+R + K +V+ATPGRL+D++
Sbjct: 231 PTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKI-KTANVVVATPGRLVDLIND 289
Query: 240 HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272
NL +V YLVLDEADRML+ GFE IK I+S
Sbjct: 290 GAINLGKVNYLVLDEADRMLEKGFEEDIKTIIS 322
Score = 273 (101.2 bits), Expect = 7.0e-63, Sum P(2) = 7.0e-63
Identities = 68/180 (37%), Positives = 94/180 (52%)
Query: 273 QVIIGSPD-LKANHAIRQHVDIVSESQKYNKLVKLLEDI----MDGSRILIFMDTKKGCD 327
+V +G D L AN I Q V+++++ K KL++LL ++ILIF KK
Sbjct: 355 KVTVGDRDELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEAS 414
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+I L+ + + +IHGD SQ +R LS FK+G+S ++ ATDVAARGLD+ +VK VIN
Sbjct: 415 RIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVIN 474
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMG 447
FP ++EDYVH FT + L IL A Q V EL G
Sbjct: 475 LTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEKHLSGALCNILRGANQPVPEELLKFG 534
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 389 (142.0 bits), Expect = 7.0e-63, Sum P(2) = 7.0e-63
Identities = 79/190 (41%), Positives = 115/190 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G D P + +F + + I+KAG+ + TP+Q P+ L GRDL+ A+TG
Sbjct: 250 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 309
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPG----DGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKT A+LLP + H+ A P +++APTREL QI E+ KF + ++
Sbjct: 310 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 369
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+ IYGG G +R + +G I+ ATPGRL+D++ L++V YLVLDEADRMLDMG
Sbjct: 370 AVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMG 429
Query: 263 FEPQIKKILS 272
F P++KK++S
Sbjct: 430 FGPEMKKLIS 439
Score = 283 (104.7 bits), Expect = 7.0e-63, Sum P(2) = 7.0e-63
Identities = 63/170 (37%), Positives = 97/170 (57%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q + V + K KLV++L +I D R ++F++TKK D I L + SIHGD
Sbjct: 489 VQQSILQVGQYSKREKLVEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGD 547
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+ Q ER+ L +F+ GK P++ AT VAARGLD+++V++VIN+D P ++++YVH
Sbjct: 548 REQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 607
Query: 407 XXXXXXXXXFF-TAANARFAKELITILEEAGQKVSP--ELAAMGRGAPPS 453
FF T ++ A+ L+ +L +A Q V E A APPS
Sbjct: 608 CGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIAFSSYAPPS 657
Score = 39 (18.8 bits), Expect = 9.6e-24, Sum P(2) = 9.6e-24
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 192 STKFGASSKIKSTCIYGGVPKG 213
S+ G SSK ++T GG +G
Sbjct: 43 SSDIGESSKRETTSTTGGFGRG 64
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 386 (140.9 bits), Expect = 7.2e-63, Sum P(2) = 7.2e-63
Identities = 81/197 (41%), Positives = 120/197 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G VP+P+ SF + +++ I + F +PTP+Q P+ GRDL+ A+TG
Sbjct: 174 VEASGDKVPEPITSFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTG 233
Query: 147 SGKTLAYLLPAIVHVNAQ-PFLAP-GDG--------PIVLVLAPTRELAVQIQQESTKFG 196
SGKT +L P + + P P +G P +LV+APTREL QI +ES KF
Sbjct: 234 SGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKFS 293
Query: 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256
S +++ +YGG G Q+R++ +G ++++ATPGRL D+L+ +L + YLVLDEAD
Sbjct: 294 YRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEAD 353
Query: 257 RMLDMGFEPQIKKILSQ 273
RMLDMGFEPQI+ I+ +
Sbjct: 354 RMLDMGFEPQIRYIVEE 370
Score = 286 (105.7 bits), Expect = 7.2e-63, Sum P(2) = 7.2e-63
Identities = 65/165 (39%), Positives = 91/165 (55%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q + V + +K + ++ LL +G I +F +TK+ D + L G+PA +IHGD
Sbjct: 418 ITQKILYVEDDEKKSVILDLLSANENGLTI-VFTETKRMADNLADYLYDQGFPATAIHGD 476
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+SQ ER+ L+ FK G +PI+ AT VAARGLD+ +V +VINYD P ++DYVH
Sbjct: 477 RSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGR 536
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMGR-GA 450
FF N K LI +L EA Q+V L + R GA
Sbjct: 537 AGNVGIATAFFNRNNKNVVKGLIELLSEANQEVPDFLTKIAREGA 581
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 396 (144.5 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
Identities = 80/199 (40%), Positives = 123/199 (61%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G ++P + +F + + + IS++G+ +PTP+Q G P+ GRDL+ A+TG
Sbjct: 169 VDVSGTNLPAAIMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTG 228
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPG----DGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKT A+LLP + + A A P +++APTREL QI QE+ KF + ++
Sbjct: 229 SGKTAAFLLPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFSFGTCVR 288
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+YGGV G Q+R+++KG ++ TPGRL+DM+ L +V +LVLDEADRMLDMG
Sbjct: 289 PVVVYGGVNTGYQMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMG 348
Query: 263 FEPQIKKILSQVIIGSPDL 281
FEP ++++ +GSP +
Sbjct: 349 FEPDMRRL-----VGSPGM 362
Score = 266 (98.7 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
Identities = 58/159 (36%), Positives = 94/159 (59%)
Query: 299 KYNKLVKLLEDIMD-GS-RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVL 356
K+NK +LL+ + GS R ++F++TK+ D I L + P SIHGD+ Q ER+ L
Sbjct: 417 KFNKREQLLDLLRTIGSERTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKAL 476
Query: 357 SEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXF 416
++F++GK P++ AT VA+RGLD+ DV++V+N+D P +++DYVH F
Sbjct: 477 ADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNTGRAVSF 536
Query: 417 FTA-ANARFAKELITILEEAGQKVSPELAAMGRGAPPSS 454
+ +++ A+ L+ IL +A Q+V L GA S+
Sbjct: 537 YDPDVDSQLARSLVGILAKAQQEVPSWLEESAFGAHGSA 575
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 390 (142.3 bits), Expect = 3.3e-62, Sum P(2) = 3.3e-62
Identities = 80/190 (42%), Positives = 115/190 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G D P + +F + + I+KAG+ + TP+Q P+ L GRDL+ A+TG
Sbjct: 249 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 308
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPG----DGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKT A+LLP + H+ A P +++APTREL QI E+ KF + ++
Sbjct: 309 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 368
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+ IYGG G VR + +G I+ ATPGRL+D++ L++V YLVLDEADRMLDMG
Sbjct: 369 AVVIYGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMG 428
Query: 263 FEPQIKKILS 272
F P++KK++S
Sbjct: 429 FGPEMKKLIS 438
Score = 277 (102.6 bits), Expect = 3.3e-62, Sum P(2) = 3.3e-62
Identities = 62/170 (36%), Positives = 96/170 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q + V + K KLV++L +I D R ++F++TKK D I L + SIHGD
Sbjct: 488 VQQTILQVGQYSKREKLVEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGD 546
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+ Q ER+ L +F+ GK P++ AT VAARGLD+++V++VIN+D P ++++YVH
Sbjct: 547 REQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 606
Query: 407 XXXXXXXXXFF-TAANARFAKELITILEEAGQKVSP--ELAAMGRGAPPS 453
FF T ++ A+ L+ +L +A Q V E A PPS
Sbjct: 607 CGNTGRAISFFDTDSDNHLAQPLVKVLSDAQQDVPAWLEEIAFSTYVPPS 656
Score = 39 (18.8 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 192 STKFGASSKIKSTCIYGGVPKG 213
S+ G SSK ++T GG +G
Sbjct: 42 SSDIGESSKKENTSTTGGFGRG 63
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 398 (145.2 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
Identities = 82/198 (41%), Positives = 123/198 (62%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G++VP + SF DV + + ++ A + +PTP+Q P+ + GRDL+ A+TG
Sbjct: 283 VEATGQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTG 342
Query: 147 SGKTLAYLLPAIV------HV----NAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196
SGKT A+L+P + HV + + + P+ LVLAPTRELA QI +E+ KF
Sbjct: 343 SGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFA 402
Query: 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256
S+++ +YGG Q+R+L +G +++ATPGRL DM+ L + +LVLDEAD
Sbjct: 403 YRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEAD 462
Query: 257 RMLDMGFEPQIKKILSQV 274
RMLDMGFEPQI++I+ Q+
Sbjct: 463 RMLDMGFEPQIRRIVEQL 480
Score = 267 (99.0 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
Identities = 62/159 (38%), Positives = 84/159 (52%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDG------SRILIFMDTKKGCDQITRQLRMDGWPA 340
I Q + V E K + L+ LL I DG S LIF++TKKG D + L P
Sbjct: 527 ITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPV 586
Query: 341 LSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHX 400
SIHGD++Q ER+ L F++G PI+ AT VAARGLD+ VK+VIN+D P +E+YVH
Sbjct: 587 TSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHR 646
Query: 401 XXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKV 439
FF N +L+ +L E Q++
Sbjct: 647 IGRTGRMGNLGVATSFFNEKNRNICSDLLELLIETKQEI 685
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 438 (159.2 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 85/181 (46%), Positives = 126/181 (69%)
Query: 94 VPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 153
+PKP+ + V F + +SK F +PTP+Q+ GWP+AL G D++GI++TGSGKTL++
Sbjct: 135 LPKPIDTIESVPFQSTIKNFLSKK-FEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSF 193
Query: 154 LLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKG 213
+LPAI H+ AQP + GP VLV+APTRELA QI QE+ ++ I+ IYGG P+
Sbjct: 194 ILPAIEHILAQPRQSYYPGPSVLVVAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRR 253
Query: 214 PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273
Q L + +IV+ TPGR+ID +ES + +L+ +++LV+DEADR+++MGFE QI I +
Sbjct: 254 SQQLQLSRRPKIVVGTPGRIIDFMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNS 313
Query: 274 V 274
+
Sbjct: 314 I 314
Score = 207 (77.9 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 49/130 (37%), Positives = 74/130 (56%)
Query: 276 IGSPDLKANHAIRQHVDIV-SESQKYNKLVKLLEDIMDG---SRILIFMDTKKGCDQITR 331
IGS L AN I Q IV +++ K + L+ L +I ++ LIF TKKG D +
Sbjct: 347 IGSSQLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADEKAQTLIFTMTKKGADTLKH 406
Query: 332 QLRMDGWPAL--SIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD 389
++ +G ++HGD Q R+ ++ +FK + I+ ATDVA+RGLD+K + +VIN+
Sbjct: 407 YIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRGLDIKGISHVINFS 466
Query: 390 FPGSLEDYVH 399
P E YVH
Sbjct: 467 LPSDCETYVH 476
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 389 (142.0 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 79/190 (41%), Positives = 115/190 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G D P + +F + + I+KAG+ + TP+Q P+ L GRDL+ A+TG
Sbjct: 261 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 320
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPG----DGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKT A+LLP + H+ A P +++APTREL QI E+ KF + ++
Sbjct: 321 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 380
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+ IYGG G +R + +G I+ ATPGRL+D++ L++V YLVLDEADRMLDMG
Sbjct: 381 AVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMG 440
Query: 263 FEPQIKKILS 272
F P++KK++S
Sbjct: 441 FGPEMKKLIS 450
Score = 270 (100.1 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 62/170 (36%), Positives = 96/170 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q + V K KLV++L +I D R ++F++TKK D I L + SIHGD
Sbjct: 500 VQQSILQVGPVFKKRKLVEILRNIGD-ERPMVFVETKKKADFIATFLCQEKISTTSIHGD 558
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+ Q ER+ L +F+ GK P++ AT VAARGLD+++V++VIN++ P ++++YVH
Sbjct: 559 REQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGR 618
Query: 407 XXXXXXXXXFF-TAANARFAKELITILEEAGQKVSP--ELAAMGRGAPPS 453
FF T ++ A+ L+ +L +A Q V E A APPS
Sbjct: 619 CGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIAFSSYAPPS 668
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 389 (142.0 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 79/190 (41%), Positives = 115/190 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G D P + +F + + I+KAG+ + TP+Q P+ L GRDL+ A+TG
Sbjct: 261 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 320
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPG----DGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKT A+LLP + H+ A P +++APTREL QI E+ KF + ++
Sbjct: 321 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 380
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+ IYGG G +R + +G I+ ATPGRL+D++ L++V YLVLDEADRMLDMG
Sbjct: 381 AVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMG 440
Query: 263 FEPQIKKILS 272
F P++KK++S
Sbjct: 441 FGPEMKKLIS 450
Score = 270 (100.1 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 62/170 (36%), Positives = 96/170 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q + V K KLV++L +I D R ++F++TKK D I L + SIHGD
Sbjct: 500 VQQSILQVGPVFKKRKLVEILRNIGD-ERPMVFVETKKKADFIATFLCQEKISTTSIHGD 558
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+ Q ER+ L +F+ GK P++ AT VAARGLD+++V++VIN++ P ++++YVH
Sbjct: 559 REQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGR 618
Query: 407 XXXXXXXXXFF-TAANARFAKELITILEEAGQKVSP--ELAAMGRGAPPS 453
FF T ++ A+ L+ +L +A Q V E A APPS
Sbjct: 619 CGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIAFSSYAPPS 668
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 444 (161.4 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 96/190 (50%), Positives = 125/190 (65%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ +EG+ P P + F D FP + Q I + GF PT IQ Q WP+ L G DL+G+A TG
Sbjct: 100 VLIEGKSQPNPFQKFTDYEFPR-MFQHIFQ-GFTAPTVIQGQSWPIILGGNDLVGLAATG 157
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDG--PIVLVLAPTRELAVQIQQESTKFGASSKIKST 204
SGKTLA+LLPA++ + + P P G P+VLV+APTRELA QI++ + I+
Sbjct: 158 SGKTLAFLLPALLKIISLP-KRPSYGATPLVLVMAPTRELAQQIEEVCKTSIRGTSIRQL 216
Query: 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFE 264
C YGG+ K Q R L+ GV+IVI TPGRL D+L H+ L V YLVLDEADRMLDMGF
Sbjct: 217 CAYGGLGKIDQSRILRNGVDIVIGTPGRLNDLLRKHH--LSSVQYLVLDEADRMLDMGFM 274
Query: 265 PQIKKILSQV 274
PQI+ ++ Q+
Sbjct: 275 PQIESLIDQI 284
Score = 199 (75.1 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 50/175 (28%), Positives = 84/175 (48%)
Query: 273 QVIIGSPDLKANHAIRQHV-------DIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKG 325
++ +GS +L + + QH+ D+ S+ Y+++ K+L + +++F + K
Sbjct: 314 KITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIYDEINKILTADPTNT-VIVFCNEKYK 372
Query: 326 CDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 384
CD L ++ +H K Q R+ L F+ + I+ ATDVAARGLD+ VK
Sbjct: 373 CDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAARGLDIPSVKA 432
Query: 385 VINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKV 439
V NY PG++EDYVH + T ++L+ IL+ QK+
Sbjct: 433 VFNYRLPGNIEDYVHRIGRTGRAGKTGDAWSYVTTQTPNL-RDLVKILQRTNQKI 486
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 391 (142.7 bits), Expect = 6.2e-61, Sum P(2) = 6.2e-61
Identities = 81/191 (42%), Positives = 117/191 (61%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G D P + +F + + I+KAG+ + TP+Q P+ L GRDL+ A+TG
Sbjct: 277 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 336
Query: 147 SGKTLAYLLPAIVH-----VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201
SGKT A+LLP + H + A F + P +++APTREL QI E+ KF + +
Sbjct: 337 SGKTAAFLLPILAHMMHDGITASRFKELQE-PECIIVAPTRELINQIYLEARKFSFGTCV 395
Query: 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261
++ IYGG G +R + +G I+ ATPGRL+D++ LR+V YLVLDEADRMLDM
Sbjct: 396 RAVVIYGGTQLGYSIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDM 455
Query: 262 GFEPQIKKILS 272
GF P++KK++S
Sbjct: 456 GFGPEMKKLIS 466
Score = 265 (98.3 bits), Expect = 6.2e-61, Sum P(2) = 6.2e-61
Identities = 56/154 (36%), Positives = 89/154 (57%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q + V + K KLV++L I D R ++F++TKK D I L + SIHGD
Sbjct: 516 VQQTILQVGQYSKREKLVEILRSIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGD 574
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+ Q ER+ L +F+ GK P++ AT VAARGLD+++V++VIN+D P ++++YVH
Sbjct: 575 REQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 634
Query: 407 XXXXXXXXXFFTA-ANARFAKELITILEEAGQKV 439
FF ++ A+ L+ +L +A Q V
Sbjct: 635 CGNTGRAISFFDPESDNHLAQPLVKVLSDAQQDV 668
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 389 (142.0 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 79/191 (41%), Positives = 117/191 (61%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G D P + +F + + I+KAG+ + TP+Q P+ L GRDL+ A+TG
Sbjct: 256 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 315
Query: 147 SGKTLAYLLPAIVH-----VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201
SGKT A+LLP + H + A F + P +++APTREL QI E+ KF + +
Sbjct: 316 SGKTAAFLLPILAHMMHDGITASRFKELQE-PECIIVAPTRELVNQIYLEARKFSFGTCV 374
Query: 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261
++ IYGG G +R + +G I+ ATPGRL+D++ L+++ YLVLDEADRMLDM
Sbjct: 375 RAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDM 434
Query: 262 GFEPQIKKILS 272
GF P++KK++S
Sbjct: 435 GFGPEMKKLIS 445
Score = 264 (98.0 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 57/154 (37%), Positives = 90/154 (58%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q V V + K KLV++L +I D R ++F++TKK D I L + SIHGD
Sbjct: 495 VQQTVLQVGQFSKREKLVEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGD 553
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+ Q ER+ L +F+ GK P++ AT VAARGLD+++V++VIN+D P ++++YVH
Sbjct: 554 REQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 613
Query: 407 XXXXXXXXXFFTA-ANARFAKELITILEEAGQKV 439
FF ++ A+ L+ +L +A Q V
Sbjct: 614 CGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDV 647
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 388 (141.6 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 79/191 (41%), Positives = 117/191 (61%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G D P + +F + + I+KAG+ + TP+Q P+ L GRDL+ A+TG
Sbjct: 277 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 336
Query: 147 SGKTLAYLLPAIVH-----VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201
SGKT A+LLP + H + A F + P +++APTREL QI E+ KF + +
Sbjct: 337 SGKTAAFLLPILAHMMHDGITASCFKELQE-PECIIVAPTRELVNQIYLEARKFSFGTCV 395
Query: 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261
++ IYGG G +R + +G I+ ATPGRL+D++ L+++ YLVLDEADRMLDM
Sbjct: 396 RAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDM 455
Query: 262 GFEPQIKKILS 272
GF P++KK++S
Sbjct: 456 GFGPEMKKLIS 466
Score = 266 (98.7 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 57/154 (37%), Positives = 90/154 (58%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q V V + K KLV++L +I D R ++F++TKK D I L + SIHGD
Sbjct: 516 VQQTVLQVGQFSKREKLVEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGD 574
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+ Q ER+ L +F+ GK P++ AT VAARGLD+++V++VIN+D P ++++YVH
Sbjct: 575 REQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 634
Query: 407 XXXXXXXXXFFTA-ANARFAKELITILEEAGQKV 439
FF ++ A+ L+ +L +A Q V
Sbjct: 635 CGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDV 668
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 370 (135.3 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 79/155 (50%), Positives = 99/155 (63%)
Query: 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177
GF PT IQ+ WP+ GRD+IGIAETGSGKTLA+ LP + V P+ +V
Sbjct: 92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVV 151
Query: 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML 237
++PTRELA+QI + KF I+ CI+GGV K Q R+ K +V+ATPGRL D+
Sbjct: 152 ISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQ-REALKSAAVVVATPGRLKDLQ 210
Query: 238 ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272
+ +L RV YLVLDEADRMLD GFE IK I+S
Sbjct: 211 NDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIIS 245
Score = 269 (99.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 64/172 (37%), Positives = 91/172 (52%)
Query: 278 SPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGS--RILIFMDTKKGCDQITRQLRM 335
S D +AN I+Q V++V +K +LV++L G+ ++L F KK ++ R LR
Sbjct: 286 SADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAFCLYKKEAMRVERLLRT 345
Query: 336 DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLE 395
G+ IHGD SQ ER L FK+G + ++ ATDVAARGLD+ VK V+N FP ++E
Sbjct: 346 KGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVE 405
Query: 396 DYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMG 447
DYVH FT + + LI +L+ A Q+V L G
Sbjct: 406 DYVHRIGRTGRAGADGHAITLFTETDKAQSGALINVLKAANQEVPEALLKFG 457
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 391 (142.7 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 81/191 (42%), Positives = 117/191 (61%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G D P + +F + + +I+KAG+ + TP+Q G P+ L GRDL+ A+TG
Sbjct: 254 VEVSGHDAPPAILTFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTG 313
Query: 147 SGKTLAYLLPAIVH-----VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201
SGKT A+LLP + H V A F + P +++APTREL QI E+ KF + +
Sbjct: 314 SGKTAAFLLPILAHMMRDGVTASRFKDQQE-PECIIVAPTRELINQIFLEARKFSFGTCV 372
Query: 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261
+ IYGG G +R + +G I+ ATPGRL+D++ L ++ YLVLDEADRMLDM
Sbjct: 373 RPVVIYGGTQLGHSIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDM 432
Query: 262 GFEPQIKKILS 272
GF P++KK++S
Sbjct: 433 GFGPEMKKLIS 443
Score = 261 (96.9 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q V V + K KLV++L +I + R ++F++TKK D I L + SIHGD
Sbjct: 495 VQQTVLQVGQYSKREKLVEILRNIGE-ERTMVFVETKKKADFIATFLCQEKISTTSIHGD 553
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+ Q ER+ L +F+ GK P++ AT VAARGLD+++V++VIN+D P ++++YVH
Sbjct: 554 REQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 613
Query: 407 XXXXXXXXXFFTAA-NARFAKELITILEEAGQ 437
FF ++ A+ L+ +L +A Q
Sbjct: 614 CGNTGKAISFFDPEPDSHLAQPLVKVLSDAQQ 645
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 389 (142.0 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 79/191 (41%), Positives = 117/191 (61%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G D P + +F + + I+KAG+ + TP+Q P+ L GRDL+ A+TG
Sbjct: 276 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 335
Query: 147 SGKTLAYLLPAIVH-----VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201
SGKT A+LLP + H + A F + P +++APTREL QI E+ KF + +
Sbjct: 336 SGKTAAFLLPILAHMMHDGITASRFKELQE-PECIIVAPTRELVNQIYLEARKFSFGTCV 394
Query: 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261
++ IYGG G +R + +G I+ ATPGRL+D++ L+++ YLVLDEADRMLDM
Sbjct: 395 RAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDM 454
Query: 262 GFEPQIKKILS 272
GF P++KK++S
Sbjct: 455 GFGPEMKKLIS 465
Score = 264 (98.0 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 57/154 (37%), Positives = 90/154 (58%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q V V + K KLV++L +I D R ++F++TKK D I L + SIHGD
Sbjct: 515 VQQTVLQVGQFSKREKLVEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGD 573
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+ Q ER+ L +F+ GK P++ AT VAARGLD+++V++VIN+D P ++++YVH
Sbjct: 574 REQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 633
Query: 407 XXXXXXXXXFFTA-ANARFAKELITILEEAGQKV 439
FF ++ A+ L+ +L +A Q V
Sbjct: 634 CGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDV 667
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 373 (136.4 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 86/197 (43%), Positives = 118/197 (59%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ G DVP+P+ F D+ +++ + I AG+ PTP+Q P GRDL+ A+TG
Sbjct: 219 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTG 278
Query: 147 SGKTLAYLLP---AIVH-----VNAQPFLAPG---DGPIVLVLAPTRELAVQIQQESTKF 195
SGKT A+L+P AI+ V+ + G P LVL+PTREL++QI ES KF
Sbjct: 279 SGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKF 338
Query: 196 GASSKIKSTCIYGGVPK-GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254
+ I S +YGG Q+ L+ G I+IATPGRLID+++ + YLVLDE
Sbjct: 339 AYRTPITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDE 398
Query: 255 ADRMLDMGFEPQIKKIL 271
ADRMLDMGFEPQI++I+
Sbjct: 399 ADRMLDMGFEPQIRQIV 415
Score = 280 (103.6 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 59/160 (36%), Positives = 88/160 (55%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q + V E +K + L+ LL+ D S L+F++TK+G + L + ++IHGD
Sbjct: 466 IMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGD 525
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
Q ER+ L F+ G +PI+ AT VAARGLD+ +VK+VINYD P +++YVH
Sbjct: 526 LKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGR 585
Query: 407 XXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
FF N A+EL+ ++ EA Q++ L M
Sbjct: 586 VGNVGLATSFFNDKNRNIARELMDLIVEANQELPDWLEGM 625
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 383 (139.9 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 79/190 (41%), Positives = 114/190 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G D P + +F + + I+KAG+ + TP+Q P+ GRDL+ A+TG
Sbjct: 278 VEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTG 337
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPG----DGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKT A+LLP + H+ A P +++APTREL QI E+ KF + ++
Sbjct: 338 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 397
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+ IYGG G +R + +G I+ ATPGRL+D++ LR+V YLVLDEADRMLDMG
Sbjct: 398 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMG 457
Query: 263 FEPQIKKILS 272
F P++KK++S
Sbjct: 458 FGPEMKKLIS 467
Score = 270 (100.1 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 56/154 (36%), Positives = 92/154 (59%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q + V + K KLV++L +I D R ++F++TKK D I L + SIHGD
Sbjct: 517 VQQTILQVGQYSKREKLVEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGD 575
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+ Q ER+ L +F+ GK P++ AT VAARGLD+++V++VIN+D P ++++YVH
Sbjct: 576 REQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 635
Query: 407 XXXXXXXXXFFTA-ANARFAKELITILEEAGQKV 439
FF ++++ A+ L+ +L +A Q V
Sbjct: 636 CGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDV 669
Score = 41 (19.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQ 128
KSF + GF + +E +GF+ + I +
Sbjct: 91 KSFGNRGFSNNKFEEGDSSGFWRESSIDCE 120
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 383 (139.9 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 79/190 (41%), Positives = 114/190 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G D P + +F + + I+KAG+ + TP+Q P+ GRDL+ A+TG
Sbjct: 278 VEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTG 337
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPG----DGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202
SGKT A+LLP + H+ A P +++APTREL QI E+ KF + ++
Sbjct: 338 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 397
Query: 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262
+ IYGG G +R + +G I+ ATPGRL+D++ LR+V YLVLDEADRMLDMG
Sbjct: 398 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMG 457
Query: 263 FEPQIKKILS 272
F P++KK++S
Sbjct: 458 FGPEMKKLIS 467
Score = 270 (100.1 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 56/154 (36%), Positives = 92/154 (59%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q + V + K KLV++L +I D R ++F++TKK D I L + SIHGD
Sbjct: 517 VQQTILQVGQYSKREKLVEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGD 575
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+ Q ER+ L +F+ GK P++ AT VAARGLD+++V++VIN+D P ++++YVH
Sbjct: 576 REQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 635
Query: 407 XXXXXXXXXFFTA-ANARFAKELITILEEAGQKV 439
FF ++++ A+ L+ +L +A Q V
Sbjct: 636 CGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDV 669
Score = 41 (19.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQ 128
KSF + GF + +E +GF+ + I +
Sbjct: 91 KSFGNRGFSNNKFEEGDSSGFWRESSIDCE 120
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 408 (148.7 bits), Expect = 1.7e-60, Sum P(2) = 1.7e-60
Identities = 90/198 (45%), Positives = 122/198 (61%)
Query: 87 ITVEGRD-VPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAET 145
I++E + + P+ SF DV D ++ I A + +PTP+Q P+ LK RDL+ A+T
Sbjct: 234 ISIETSEHICAPLNSFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQT 293
Query: 146 GSGKTLAYLLPAIVHV------NAQPFLAPGDG----PIVLVLAPTRELAVQIQQESTKF 195
GSGKT A+L P I + A P PG P LVLAPTRELA QI E+ KF
Sbjct: 294 GSGKTAAFLFPIISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKF 353
Query: 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 255
S + S IYGG Q+ +L +G +I++AT GRL+D+L +L ++ YLVLDEA
Sbjct: 354 SYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEA 413
Query: 256 DRMLDMGFEPQIKKILSQ 273
DRMLDMGFEPQI++I+S+
Sbjct: 414 DRMLDMGFEPQIRQIISE 431
Score = 242 (90.2 bits), Expect = 1.7e-60, Sum P(2) = 1.7e-60
Identities = 56/192 (29%), Positives = 88/192 (45%)
Query: 253 DEADRMLDMGFEPQIKKILSQVIIGSPDLKAN-----HAIRQHVDIVSESQKYNKLVKLL 307
D M F QI+ + + + LK I Q ++ V E K + L+ L
Sbjct: 439 DRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTTQNITQRIEYVVEEDKNSYLLDYL 498
Query: 308 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 367
+ LIF++TK+ CD +T L +P IHGD +Q ER+ L F++ +P +
Sbjct: 499 SGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFL 558
Query: 368 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKE 427
ATD+A+RGL + +V VIN+D P + YVH FF N E
Sbjct: 559 VATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAE 618
Query: 428 LITILEEAGQKV 439
L+ +++ + Q +
Sbjct: 619 LLKLMKASNQDI 630
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 389 (142.0 bits), Expect = 2.6e-60, Sum P(2) = 2.6e-60
Identities = 79/191 (41%), Positives = 117/191 (61%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G D P + +F + + I+KAG+ + TP+Q P+ L GRDL+ A+TG
Sbjct: 274 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 333
Query: 147 SGKTLAYLLPAIVH-----VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201
SGKT A+LLP + H + A F + P +++APTREL QI E+ KF + +
Sbjct: 334 SGKTAAFLLPILAHMMHDGITASRFKELQE-PECIIVAPTRELVNQIYLEARKFSFGTCV 392
Query: 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261
++ IYGG G +R + +G I+ ATPGRL+D++ L+++ YLVLDEADRMLDM
Sbjct: 393 RAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDM 452
Query: 262 GFEPQIKKILS 272
GF P++KK++S
Sbjct: 453 GFGPEMKKLIS 463
Score = 261 (96.9 bits), Expect = 2.6e-60, Sum P(2) = 2.6e-60
Identities = 56/153 (36%), Positives = 89/153 (58%)
Query: 289 QHVDI-VSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 347
Q D+ V + K KL+++L +I D R ++F++TKK D I L + SIHGD+
Sbjct: 514 QQADLQVGQYSKREKLLEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGDR 572
Query: 348 SQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXX 407
Q ER+ L +F+ GK P++ AT VAARGLD+++V++VIN+D P ++++YVH
Sbjct: 573 EQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRC 632
Query: 408 XXXXXXXXFFTA-ANARFAKELITILEEAGQKV 439
FF ++ A+ L+ +L +A Q V
Sbjct: 633 GNTGRAISFFDLESDNHLAQPLVKVLTDAQQDV 665
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 398 (145.2 bits), Expect = 5.6e-60, Sum P(2) = 5.6e-60
Identities = 80/191 (41%), Positives = 121/191 (63%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G + PK + +F + G D + + +SK+G+ +PTP+Q G P+ GRDL+ A+TG
Sbjct: 265 VDVSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTG 324
Query: 147 SGKTLAYLLPAIVH-----VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201
SGKT A+LLP + V A F + P +++APTREL QI E+ KF + +
Sbjct: 325 SGKTAAFLLPILQRFMTDGVAASKFSEIQE-PEAIIVAPTRELINQIYLEARKFAYGTCV 383
Query: 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261
+ +YGG+ G +R++ KG ++ ATPGRL D++ L +V YLVLDEADRMLDM
Sbjct: 384 RPVVVYGGINTGYTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDM 443
Query: 262 GFEPQIKKILS 272
GFEP+++K+++
Sbjct: 444 GFEPEMRKLVA 454
Score = 248 (92.4 bits), Expect = 5.6e-60, Sum P(2) = 5.6e-60
Identities = 54/157 (34%), Positives = 88/157 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
+ Q V V + K ++L++LL R ++F++TK+ D I L + SIHGD
Sbjct: 504 VEQTVVQVDQYSKRDQLLELLR-ATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGD 562
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXX 406
+ Q ER+ LS+F+ G P++ AT VAARGLD++ V++V+N+D P S+++YVH
Sbjct: 563 REQREREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGR 622
Query: 407 XXXXXXXXXFFTA-ANARFAKELITILEEAGQKVSPE 442
FF ++ A+ L+ +L A Q+V P+
Sbjct: 623 CGNTGRAVSFFNPESDTPLARSLVKVLSGA-QQVVPK 658
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 422 (153.6 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 88/191 (46%), Positives = 125/191 (65%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
I ++G VP P++ + + + +++ I KA + +PTPIQ Q P+AL+ RDLIGIAETG
Sbjct: 686 IYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETG 745
Query: 147 SGKTLAYLLPAIVHVNAQPFLA---PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 203
SGKT A++LP + +V P L DGP LV+AP+RELA+QI +E+ KF + ++
Sbjct: 746 SGKTAAFVLPMLSYVKQLPPLTYETSQDGPYALVIAPSRELAIQIYEETNKFASYCSCRT 805
Query: 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263
+ GG Q +L++GVEIVI TPGRL D LE T L + Y++LDEADRM+DMGF
Sbjct: 806 VAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGF 865
Query: 264 EPQIKKILSQV 274
E + IL ++
Sbjct: 866 EDTVHYILDKI 876
Score = 227 (85.0 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 56/171 (32%), Positives = 87/171 (50%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
+ IG P +I Q ++ ++E +K KL ++LE M I++F++ KK D I++ +
Sbjct: 931 ISIGDPGA-GKRSIEQKLEFLTEGKKKQKLQEILE--MYEPPIIVFVNQKKVADIISKSI 987
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ A+++HG K+Q R+ LS FK + I+ ATDVA RG+DV VK VIN+D P
Sbjct: 988 TKMKYKAVALHGGKAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKD 1047
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELA 444
+E Y H F T ++ +L L + V ELA
Sbjct: 1048 IESYTHRIGRTGRAGMKGLAISFITEHDSHLFYDLKQFLISSNNIVPLELA 1098
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 422 (153.6 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 88/191 (46%), Positives = 125/191 (65%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
I ++G VP P++ + + + +++ I KA + +PTPIQ Q P+AL+ RDLIGIAETG
Sbjct: 686 IYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETG 745
Query: 147 SGKTLAYLLPAIVHVNAQPFLA---PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 203
SGKT A++LP + +V P L DGP LV+AP+RELA+QI +E+ KF + ++
Sbjct: 746 SGKTAAFVLPMLSYVKQLPPLTYETSQDGPYALVIAPSRELAIQIYEETNKFASYCSCRT 805
Query: 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263
+ GG Q +L++GVEIVI TPGRL D LE T L + Y++LDEADRM+DMGF
Sbjct: 806 VAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGF 865
Query: 264 EPQIKKILSQV 274
E + IL ++
Sbjct: 866 EDTVHYILDKI 876
Score = 227 (85.0 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 56/171 (32%), Positives = 87/171 (50%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
+ IG P +I Q ++ ++E +K KL ++LE M I++F++ KK D I++ +
Sbjct: 931 ISIGDPGA-GKRSIEQKLEFLTEGKKKQKLQEILE--MYEPPIIVFVNQKKVADIISKSI 987
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ A+++HG K+Q R+ LS FK + I+ ATDVA RG+DV VK VIN+D P
Sbjct: 988 TKMKYKAVALHGGKAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKD 1047
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELA 444
+E Y H F T ++ +L L + V ELA
Sbjct: 1048 IESYTHRIGRTGRAGMKGLAISFITEHDSHLFYDLKQFLISSNNIVPLELA 1098
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 411 (149.7 bits), Expect = 2.8e-59, Sum P(2) = 2.8e-59
Identities = 84/191 (43%), Positives = 121/191 (63%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
I+++G D+P P++++ + G P +++ + K + EP+ IQ P+ L+ +DLIGIAETG
Sbjct: 237 ISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETG 296
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGD---GPIVLVLAPTRELAVQIQQESTKFGASSKIKS 203
SGKT A+++P I+ ++ P L + GP +VLAPTRELA QIQ E KF +
Sbjct: 297 SGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRC 356
Query: 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263
+ GG Q + +G IV+ATPGRL+D LE L + TY+V+DEADRMLDMGF
Sbjct: 357 VSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGF 416
Query: 264 EPQIKKILSQV 274
E + KILS +
Sbjct: 417 EDDVNKILSSL 427
Score = 224 (83.9 bits), Expect = 2.8e-59, Sum P(2) = 2.8e-59
Identities = 40/114 (35%), Positives = 74/114 (64%)
Query: 287 IRQHVDIVSE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG 345
+ Q V+++S+ S+K+ ++ ++LE I+IF++ K+ + I +QL GW A+++HG
Sbjct: 489 VEQRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHG 548
Query: 346 DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
KSQ +R+ + + + + I+ ATD+A RG+D+ +V V+NY+ S+EDY H
Sbjct: 549 SKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTH 602
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 117/211 (55%), Positives = 151/211 (71%)
Query: 65 VESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTP 124
V PS A S ITV G VP P+ SF GFP +++E+ AGF PTP
Sbjct: 124 VPLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTP 183
Query: 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD-GPIVLVLAPTRE 183
IQAQ WP+A++GRD++ IA+TGSGKTL YL+P +H+ Q GP +LVL+PTRE
Sbjct: 184 IQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL--QRIRNDSRMGPTILVLSPTRE 241
Query: 184 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTN 243
LA QIQ+E+ KFG SS+I TC+YGG PKGPQ+RDL++G +IV+ATPGRL D+LE +
Sbjct: 242 LATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRIS 301
Query: 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
LR+++YLVLDEADRMLDMGFEPQI+KI+ ++
Sbjct: 302 LRQISYLVLDEADRMLDMGFEPQIRKIVKEI 332
Score = 407 (148.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 90/235 (38%), Positives = 141/235 (60%)
Query: 225 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQ-IKKILS-------QVII 276
+V+ R++DM +R++ + + ++ P+ ++KI + QV I
Sbjct: 308 LVLDEADRMLDM--GFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNI 365
Query: 277 GSPD-LKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM 335
G+ D L AN +I QH+++V+ +K +L ++L GS+++IF TK+ CDQ+TR L
Sbjct: 366 GNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTR 425
Query: 336 DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLE 395
+ A +IHGDKSQ ERD VL++F++G++P++ ATDVAARGLDVKD++ V+NYDFP +E
Sbjct: 426 Q-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 484
Query: 396 DYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMG-RG 449
DYVH FF +++ A +LI ILE A Q+V P++ M RG
Sbjct: 485 DYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATRG 539
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 367 (134.2 bits), Expect = 4.4e-59, Sum P(2) = 4.4e-59
Identities = 80/172 (46%), Positives = 109/172 (63%)
Query: 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG-PIVLVLA 179
EPTPIQA WP L GRD++GIAETGSGKT+A+ +PA+ ++N L+ P VLV++
Sbjct: 187 EPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNG---LSDNKSVPRVLVVS 243
Query: 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES 239
PTRELA+Q + + +K+ +YGG PK Q R K ++I TPGRL+D++
Sbjct: 244 PTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGRLLDLIND 302
Query: 240 HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHV 291
+ + +V YLVLDEADRMLD GFE I+ I+S +PD N + RQ V
Sbjct: 303 GSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISH----TPDPTRNGS-RQTV 349
Score = 264 (98.0 bits), Expect = 4.4e-59, Sum P(2) = 4.4e-59
Identities = 64/185 (34%), Positives = 97/185 (52%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK--LLEDIMDGSR---ILIFMDTKKGCD 327
++ IGS +L A+ I Q V+I+ + + +++ L + + G + ILIF+ KK
Sbjct: 372 KITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAA 431
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
++ L + + IHGD SQ R L++FK+GK P++ ATDVAARGLD+ V+ VIN
Sbjct: 432 RVEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVIN 490
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMG 447
FP ++EDYVH FFT + A EL+ +L +A Q + L G
Sbjct: 491 VTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGLFKFG 550
Query: 448 RGAPP 452
P
Sbjct: 551 TAVKP 555
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 361 (132.1 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 74/190 (38%), Positives = 112/190 (58%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ V G DVP + +F + D + + + K+G+ + TPIQ P+ + GRDL+ A+TG
Sbjct: 274 VEVSGSDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTG 333
Query: 147 SGKTLAYLLPAIVH-----VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201
SGKT A+LLP + H V + F + P +++APTREL QI ++ KF + +
Sbjct: 334 SGKTAAFLLPILAHLMVKGVESSAFQTLKE-PEAIIVAPTRELINQIYLDARKFSYGTCV 392
Query: 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261
+ IYGG ++ + +G I+ ATPGRL+D++ L ++ YLVLDEADRMLDM
Sbjct: 393 RPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDM 452
Query: 262 GFEPQIKKIL 271
GF I+ +L
Sbjct: 453 GFREDIENLL 462
Score = 273 (101.2 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 64/172 (37%), Positives = 96/172 (55%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGS-RILIFMDTKKGCDQITRQLRMDGWPALSIHG 345
+ Q V V E K +KL+++L++I GS R ++F+ TKK D I L + P+ SIHG
Sbjct: 513 VEQMVIEVDEFGKKDKLMEILQEI--GSERTMVFVKTKKKADFIATFLCQEKVPSTSIHG 570
Query: 346 DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXX 405
D+ Q ER+ L +F+ G+ P++ AT VAARGLD+++V YVIN+D P +++YVH
Sbjct: 571 DREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTG 630
Query: 406 XXXXXXXXXXFFTAAN---ARFAKELITILEEAGQKVSPELAAMGRGAPPSS 454
FF R A+ L+ +L +A Q+V L + A SS
Sbjct: 631 RCGNTGRAISFFDKRGDDEQRIARSLVKVLSDAHQEVPAWLEEVAFSAHGSS 682
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 385 (140.6 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 78/179 (43%), Positives = 115/179 (64%)
Query: 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157
+ F+ +G ++ ++KAG+ PTPIQ Q P+ ++GRD++G+A+TG+GKTLA+ P
Sbjct: 6 MSDFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPI 65
Query: 158 IVHV--NAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215
+ + NA P AP G VLVLAPTRELA QI +GA ++ + GG G Q
Sbjct: 66 LDRLSRNASP--APVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQ 123
Query: 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
+R L++G I++ATPGRLID++E +L +V L+LDEAD+MLD+GF ++ I V
Sbjct: 124 IRQLERGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNV 182
Score = 220 (82.5 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 49/128 (38%), Positives = 76/128 (59%)
Query: 272 SQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITR 331
++V + P A I Q V V + +K + L++ + D S I +F TK G D + +
Sbjct: 211 AEVSVAPPATTAGR-IEQRVCFVEQPEKASLLIEKIRDPELRSAI-VFTRTKHGADGVVK 268
Query: 332 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 391
+L +++IHG+KSQ++R+ L FKAG+ PI+ ATD+AARG+ V + +VINYD P
Sbjct: 269 RLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATDIAARGIHVDALTHVINYDLP 328
Query: 392 GSLEDYVH 399
E +VH
Sbjct: 329 DVPEQFVH 336
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 130/229 (56%), Positives = 151/229 (65%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDV-PKPVKSFRDVGFP 107
+K DL L FEKNFYVE P VA ++ ITV G DV PKPV +F FP
Sbjct: 41 KKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFP 100
Query: 108 DYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL 167
YVM + F EPTPIQ QG+P+AL GRD++GIA+TGSGKTLAYLLPAIVH+N QP+L
Sbjct: 101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL 160
Query: 168 APGDGPIVLVLAPTRELAVQIQQEST--KFGASSKIKSTCIYGGVPKGPQVRDLQKGVEI 225
GDGPIV VL P + + T KF SS + C G KG ++ L + VEI
Sbjct: 161 ERGDGPIVSVL-PFFSTLFSVYRGGTDFKFKCSS-LFWVCFLGQSLKGQRLEWLSQCVEI 218
Query: 226 VIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
IATPGR ID LES TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 219 CIATPGR-IDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 266
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 100/236 (42%), Positives = 154/236 (65%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKIL----- 271
+L++ +V+ R++DM +R++ + D M + +++++
Sbjct: 235 NLRRCTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 292
Query: 272 --SQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCD 327
+Q+ +G+ +L ANH I Q VD+ ES+K +KL++L+E+IM ++ +IF++TK+ CD
Sbjct: 293 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 352
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+TR++R DGWPA+ IHGDKSQ ERDWVL+EF++GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 353 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 412
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDYVH FFT N + A+ELI +LEEA Q ++P+L
Sbjct: 413 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 468
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 403 (146.9 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 85/201 (42%), Positives = 122/201 (60%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
I +G VP P++S+ + G P +++ + + G+ EPTPIQ P+A++ RDLIG+A TG
Sbjct: 334 IATKGGSVPNPMRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTG 393
Query: 147 SGKTLAYLLPAIVHVNAQPFL-----APGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201
SGKT A+LLP + ++ P + DGP +VLAPTRELA QI+ E+ KF
Sbjct: 394 SGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGF 453
Query: 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261
I GG Q L+ G EI+IATPGRL+D +E L + Y+++DEADRM+D+
Sbjct: 454 NVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDL 513
Query: 262 GFEPQIKKILSQVIIGS--PD 280
GFE + KIL + + + PD
Sbjct: 514 GFEEPVNKILDALPVTNEKPD 534
Score = 214 (80.4 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 42/127 (33%), Positives = 79/127 (62%)
Query: 274 VIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQ 332
V IGS +A + Q V++++ E ++ +L ++L I++F++ K+ CD I R+
Sbjct: 582 VTIGSAG-EAVDTVEQRVEMIAGEDKRKKRLGEILSSGDFRPPIIVFVNIKRNCDAIARE 640
Query: 333 LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG 392
++ G+ ++++HG K+Q +R+ L+ + G + ++ ATD+A RG+DV DV VIN++
Sbjct: 641 IKQWGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMAT 700
Query: 393 SLEDYVH 399
S+E Y H
Sbjct: 701 SIESYTH 707
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 407 (148.3 bits), Expect = 1.7e-56, Sum P(2) = 1.7e-56
Identities = 84/228 (36%), Positives = 141/228 (61%)
Query: 47 SPRKLDLDGLTPFEKNFYV--ESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDV 104
SP+++ + +P + FYV E P + + I+V+G+DV +P+ F
Sbjct: 150 SPQRVAAEPESPLDA-FYVYKEHPFIVTLKEDQIETLKQQLGISVQGQDVARPIIDFEHC 208
Query: 105 GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQ 164
GFP+ + Q + K+G+ PTPIQ Q P+ L GRD++ A+TGSGKT A+LLP I+ ++
Sbjct: 209 GFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSE 268
Query: 165 PFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQKGV 223
P L+L PTRELA+QI++++ + + ++K+ + GG+P PQ+ L++ V
Sbjct: 269 D-----KTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHV 323
Query: 224 EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271
+++IATPGRL+D+++ + +L + +V+DEAD ML MGF+ Q+ +L
Sbjct: 324 KVIIATPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVL 371
Score = 198 (74.8 bits), Expect = 1.7e-56, Sum P(2) = 1.7e-56
Identities = 49/173 (28%), Positives = 87/173 (50%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITR 331
++I G +L ++RQ + V + K KL ++L D + +L+F+D K G D ++
Sbjct: 404 RIITGDKNLPCA-SVRQIILWVEDPAKKKKLFEILNDQKLFKPPVLVFVDCKLGADLLSE 462
Query: 332 QL-RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 390
+ ++ G + SIH +KSQ ER +L G ++ +T V RGLD+ +VK V+N+D
Sbjct: 463 AVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVNFDM 522
Query: 391 PGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
P S+++YVH F + R ++ ++ G + P+L
Sbjct: 523 PSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPTGSILPPQL 575
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 370 (135.3 bits), Expect = 2.5e-56, Sum P(2) = 2.5e-56
Identities = 77/195 (39%), Positives = 114/195 (58%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
I +G D+P P+ +F+++ P V+ + + G +P+PIQ QG P+ L GRD+IGIA TG
Sbjct: 210 IITDGEDIPPPITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTG 269
Query: 147 SGKTLAYLLPAIVHVNAQPFLAP---GDGPIVLVLAPTRELAVQIQQESTKF-------G 196
SGKTL + LP ++ + P G+GP L+L P+RELA Q F G
Sbjct: 270 SGKTLVFTLPMVLFALEEECKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNG 329
Query: 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256
++++ GG+ Q +KGV ++IATPGRL+D+L N + YL LDEAD
Sbjct: 330 GHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEAD 389
Query: 257 RMLDMGFEPQIKKIL 271
R++D+GFE I+ +L
Sbjct: 390 RLIDLGFEDDIRSVL 404
Score = 241 (89.9 bits), Expect = 2.5e-56, Sum P(2) = 2.5e-56
Identities = 59/163 (36%), Positives = 84/163 (51%)
Query: 283 ANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSR-ILIFMDTKKGCDQITRQLRMDGWPAL 341
AN + Q V+ V K +V LLE + +LIF + KK D I L + A+
Sbjct: 446 ANLNVTQEVEFVKPEAK---IVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQVEAV 502
Query: 342 SIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXX 401
SIHGDKSQ ER+ + F+ GK ++ ATDVA++GLD ++++VIN+D P +E+Y+H
Sbjct: 503 SIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRI 562
Query: 402 XXXXXXXXXXXXXXFFTAANAR-FAKELITILEEAGQKVSPEL 443
F N +L +L EA QKV P L
Sbjct: 563 GRTGRRGNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPAL 605
>SGD|S000000441 [details] [associations]
symbol:PRP5 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
Length = 849
Score = 481 (174.4 bits), Expect = 2.6e-56, Sum P(2) = 2.6e-56
Identities = 105/226 (46%), Positives = 145/226 (64%)
Query: 56 LTPFEKNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGRDVPKPVKSFRDVGFPDYVMQEI 114
L PF+KNFY+ES +V++MS I ++G PKPV + +G M I
Sbjct: 211 LEPFQKNFYIESETVSSMSEMEVEELRLSLDNIKIKGTGCPKPVTKWSQLGLSTDTMVLI 270
Query: 115 S-KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQ-PFLAPGDG 172
+ K F TPIQ+Q P + GRD+IGI++TGSGKT++YLLP + V AQ P G
Sbjct: 271 TEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETG 330
Query: 173 PIVLVLAPTRELAVQIQQESTKFG-ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPG 231
P+ L+LAPTRELA+QI +E TKF A + I+S C GG Q+ DL++G EIV+ATPG
Sbjct: 331 PMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPG 390
Query: 232 RLIDMLESHNTNL---RRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
R ID+L ++ L +R+T++V+DEADR+ D+GFEPQI +I+ V
Sbjct: 391 RFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTV 436
Score = 131 (51.2 bits), Expect = 2.6e-56, Sum P(2) = 2.6e-56
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 314 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 373
++ +IF+ ++ CD I+++L G +IH K ER L +FK K+ I+ T+V
Sbjct: 526 AKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVL 585
Query: 374 ARGLDVKDVKYVINYDFPGSLEDYVH 399
+RGL+V +V VI Y+ + YVH
Sbjct: 586 SRGLNVPEVSLVIIYNAVKTFAQYVH 611
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 401 (146.2 bits), Expect = 3.1e-56, Sum P(2) = 3.1e-56
Identities = 81/189 (42%), Positives = 121/189 (64%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
I VEGR VP+P+ F GFP+ + + AG+ PTPIQ Q P+ L GRDL+ A+TG
Sbjct: 179 IVVEGRGVPRPIIDFGHCGFPETLNFNLKTAGYEVPTPIQMQMIPVGLLGRDLLASADTG 238
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF-GASSKIKSTC 205
SGKT A+LLP I L P LVL PTRELA+QI++++ + G ++++
Sbjct: 239 SGKTAAFLLPVITRA-----LVQSKAPSALVLTPTRELAIQIERQAKELMGGLPRMRTAL 293
Query: 206 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP 265
+ GG+P PQ+ L++ V+++IATPGRL+D+++ + +L + +V+DEAD ML MGF+
Sbjct: 294 LVGGLPAPPQLHRLRQRVQVIIATPGRLLDIMKQSSVDLGNIKIVVVDEADTMLKMGFQE 353
Query: 266 QIKKILSQV 274
Q+ +L V
Sbjct: 354 QVLDVLENV 362
Score = 201 (75.8 bits), Expect = 3.1e-56, Sum P(2) = 3.1e-56
Identities = 50/173 (28%), Positives = 86/173 (49%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITR 331
+V+ G +L ++RQ V V E K KL ++L D + +L+F+D K G D ++
Sbjct: 392 RVLAGEKNLPCP-SVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSE 450
Query: 332 QL-RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 390
+ ++ G + S+H +KSQ ER +L G ++ +T V RGLD+ VK V+N+D
Sbjct: 451 AVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVLGRGLDLISVKLVVNFDM 510
Query: 391 PGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
P S+++YVH F + R ++ ++ G + P+L
Sbjct: 511 PSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSLLPPQL 563
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 416 (151.5 bits), Expect = 5.0e-56, Sum P(2) = 5.0e-56
Identities = 80/188 (42%), Positives = 121/188 (64%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
I+ +G P P++++++ P +++ I + G+ +P+PIQ Q P++L GRD++GIAETG
Sbjct: 401 ISTKGGIAPNPIRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETG 460
Query: 147 SGKTLAYLLPAIVHVNAQPFLAP---GDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 203
SGKT A+++P +++++ QP L DGP LV+APTREL QI++E+ F +
Sbjct: 461 SGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRV 520
Query: 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263
+ GG Q + KG EI+IATPGRL D LE L + Y+VLDEAD M+D+GF
Sbjct: 521 VSLVGGQSIEDQAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGF 580
Query: 264 EPQIKKIL 271
EPQ+ +L
Sbjct: 581 EPQVTSVL 588
Score = 196 (74.1 bits), Expect = 5.0e-56, Sum P(2) = 5.0e-56
Identities = 61/207 (29%), Positives = 94/207 (45%)
Query: 238 ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIV-SE 296
ES +++ R T L +++ + +++ + + IG K IRQ V V SE
Sbjct: 608 ESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCT-ITIGEAG-KVVDRIRQTVIFVKSE 665
Query: 297 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVL 356
+ K L +L++D I+IF++ KK CD I L +H +SQ +R+ L
Sbjct: 666 NDKKEHLTQLIKD-GPPPPIIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQEQREAAL 724
Query: 357 SEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXF 416
FK K ++ AT VA+RG+ V V +VIN+D P ++EDY H F
Sbjct: 725 EGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGSAGLASSF 784
Query: 417 FTAANARFAKELITILEEAGQKVSPEL 443
T + +L IL V EL
Sbjct: 785 ITDKDVEIMYDLKQILTSTNNIVPIEL 811
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 387 (141.3 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
Identities = 75/171 (43%), Positives = 114/171 (66%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
+F ++ ++++ ++ G+ EPTP+QA P AL+ DL+ A+TG+GKT A++LPA+
Sbjct: 2 TFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQ 61
Query: 160 HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219
+++ P PG GP VLVL PTRELA Q+ +GA +++S I GG+P Q+R L
Sbjct: 62 RLSSPP-QGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLL 120
Query: 220 QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKI 270
V+ ++ATPGRL+D+L+ + +L R+ LVLDEADRMLDMGF + +I
Sbjct: 121 SAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRI 171
Score = 206 (77.6 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
Identities = 46/121 (38%), Positives = 69/121 (57%)
Query: 282 KANHA-IRQHVDIVSESQKYNKLVKLLEDIMDGS--RILIFMDTKKGCDQITRQLRMDGW 338
K H I Q + + + N+L++ L I D S R +IF TK+ + + +L+ G
Sbjct: 212 KTTHEHIEQRLHVADDLHHKNRLLRHL--ITDESLRRAIIFSATKRDAENLALELKAQGH 269
Query: 339 PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 398
A ++HGD Q R+ ++ K G+ ++ ATDVAARGLDV + +VIN+D P EDYV
Sbjct: 270 SAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAARGLDVTGISHVINFDLPKFAEDYV 329
Query: 399 H 399
H
Sbjct: 330 H 330
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 391 (142.7 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 87/195 (44%), Positives = 116/195 (59%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
I VEG P++SFR++ FP ++ ++ G PTPIQ QG P L GRDLIGIA TG
Sbjct: 165 ILVEGETPSPPIRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTG 224
Query: 147 SGKTLAYLLPAIVHVNAQPFLAP---GDGPIVLVLAPTRELAVQ----IQQESTKFGASS 199
SGKTL ++LP I+ Q + P +GP L++ P+RELA Q IQ S A
Sbjct: 225 SGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACG 284
Query: 200 --KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257
+I+S GG+P + + +GV IV+ATPGRL+DML+ L YL +DEADR
Sbjct: 285 MPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADR 344
Query: 258 MLDMGFEPQIKKILS 272
M+DMGFE ++ I S
Sbjct: 345 MIDMGFEEDVRTIFS 359
Score = 207 (77.9 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 283 ANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 342
A+ + Q V+ V + K L+ L+ +LIF + K+ D I L + G A++
Sbjct: 400 ASMNVTQQVEYVKQEAKVVYLLDCLQKT--APPVLIFAEKKQDVDCIHEYLLLKGVEAVA 457
Query: 343 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
IHG K Q ER + ++ GK ++ ATDVA++GLD +V++VINYD P +E+YVH
Sbjct: 458 IHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVH 514
>UNIPROTKB|E2R4Z9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 EMBL:AAEX03005031
Ensembl:ENSCAFT00000017691 Uniprot:E2R4Z9
Length = 569
Score = 391 (142.7 bits), Expect = 2.1e-55, Sum P(2) = 2.1e-55
Identities = 88/263 (33%), Positives = 147/263 (55%)
Query: 47 SPRKLDLDGLTPFEKNF-YVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVG 105
+P K + + +P + Y E P + + I V+G+DV +P+ F G
Sbjct: 151 APHKANSEPESPLNTLYVYKEHPFILNLQEDQIENLKRQLGIVVQGQDVTRPIIDFEHCG 210
Query: 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 165
FP+ + + +G+ PTPIQ Q P+ L GRD++ A+TGSGKT A+LLP I
Sbjct: 211 FPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITRA---- 266
Query: 166 FLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQKGVE 224
L P L+L PTRELA+QI+ ++ + + ++K+ + GG+P PQ+ L++ V+
Sbjct: 267 -LCESKTPSALILTPTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVK 325
Query: 225 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKAN 284
++IATPGRL+D+++ + L + +V+DEAD ML MGF+ Q+ IL V S + +
Sbjct: 326 VIIATPGRLLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVS 385
Query: 285 HAIRQHVDIVSESQKYNKLVKLL 307
I ++ ++ SQ + V+++
Sbjct: 386 ATIPTSIEQLA-SQLLHNPVRII 407
Score = 199 (75.1 bits), Expect = 2.1e-55, Sum P(2) = 2.1e-55
Identities = 44/129 (34%), Positives = 76/129 (58%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITR 331
++I G +L + ++RQ + V E K KL ++L D + +L+F+D K G D ++
Sbjct: 405 RIITGEKNLPCS-SVRQIILWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSE 463
Query: 332 QL-RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 390
+ ++ G ++SIH +KSQ ER +L G ++ +T V RGLD+ V+ V+N+D
Sbjct: 464 AVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDM 523
Query: 391 PGSLEDYVH 399
P S+++YVH
Sbjct: 524 PSSMDEYVH 532
>UNIPROTKB|B7Z5N6 [details] [associations]
symbol:DDX59 "cDNA FLJ56549, highly similar to Homo sapiens
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (DDX59), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
HOGENOM:HOG000006599 HOVERGEN:HBG106120 OrthoDB:EOG4K9BBZ
EMBL:AK299219 IPI:IPI00514037 SMR:B7Z5N6 Ensembl:ENST00000367348
UCSC:uc010ppl.1 Uniprot:B7Z5N6
Length = 567
Score = 395 (144.1 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 84/238 (35%), Positives = 137/238 (57%)
Query: 39 KRDYDGAESPRKLDLDGLTPFEKNF-YVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKP 97
K + +P+K D + +P ++ Y E P + + I V+G++V +P
Sbjct: 142 KEEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVTRP 201
Query: 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157
+ F P+ + + K+G+ PTPIQ Q P+ L GRD++ A+TGSGKT A+LLP
Sbjct: 202 IIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV 261
Query: 158 IVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQV 216
I+ L P L+L PTRELA+QI++++ + + ++K+ + GG+P PQ+
Sbjct: 262 IMRA-----LFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQL 316
Query: 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
LQ+ V+++IATPGRL+D+++ + L V +V+DEAD ML MGF+ Q+ IL +
Sbjct: 317 YRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENI 374
Score = 193 (73.0 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 43/129 (33%), Positives = 75/129 (58%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITR 331
++I G +L + +RQ + V + K KL ++L D + +L+F+D K G D ++
Sbjct: 404 RIITGEKNLPCAN-VRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSE 462
Query: 332 QL-RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 390
+ ++ G ++SIH +KSQ ER +L G ++ +T V RGLD+ V+ V+N+D
Sbjct: 463 AVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDM 522
Query: 391 PGSLEDYVH 399
P S+++YVH
Sbjct: 523 PSSMDEYVH 531
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 391 (142.7 bits), Expect = 3.6e-55, Sum P(2) = 3.6e-55
Identities = 88/263 (33%), Positives = 147/263 (55%)
Query: 47 SPRKLDLDGLTPFEKNF-YVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVG 105
+P K + + +P + Y E P + + I V+G+DV +P+ F G
Sbjct: 151 APHKANSEPESPLNTLYVYKEHPFILNLQEDQIENLKRQLGIVVQGQDVTRPIIDFEHCG 210
Query: 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 165
FP+ + + +G+ PTPIQ Q P+ L GRD++ A+TGSGKT A+LLP I
Sbjct: 211 FPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITRA---- 266
Query: 166 FLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQKGVE 224
L P L+L PTRELA+QI+ ++ + + ++K+ + GG+P PQ+ L++ V+
Sbjct: 267 -LCESKTPSALILTPTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVK 325
Query: 225 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKAN 284
++IATPGRL+D+++ + L + +V+DEAD ML MGF+ Q+ IL V S + +
Sbjct: 326 VIIATPGRLLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVS 385
Query: 285 HAIRQHVDIVSESQKYNKLVKLL 307
I ++ ++ SQ + V+++
Sbjct: 386 ATIPTSIEQLA-SQLLHNPVRII 407
Score = 204 (76.9 bits), Expect = 3.6e-55, Sum P(2) = 3.6e-55
Identities = 49/173 (28%), Positives = 88/173 (50%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITR 331
++I G +L + ++RQ + V E K KL ++L D + +L+F+D K G D ++
Sbjct: 405 RIITGEKNLPCS-SVRQIILWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSE 463
Query: 332 QL-RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 390
+ ++ G ++SIH +KSQ ER +L G ++ +T V RGLD+ V+ V+N+D
Sbjct: 464 AVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDM 523
Query: 391 PGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
P S+++YVH F + R ++ ++ G + P+L
Sbjct: 524 PSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQL 576
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 395 (144.1 bits), Expect = 4.8e-55, Sum P(2) = 4.8e-55
Identities = 84/238 (35%), Positives = 137/238 (57%)
Query: 39 KRDYDGAESPRKLDLDGLTPFEKNF-YVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKP 97
K + +P+K D + +P ++ Y E P + + I V+G++V +P
Sbjct: 142 KEEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVTRP 201
Query: 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157
+ F P+ + + K+G+ PTPIQ Q P+ L GRD++ A+TGSGKT A+LLP
Sbjct: 202 IIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV 261
Query: 158 IVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQV 216
I+ L P L+L PTRELA+QI++++ + + ++K+ + GG+P PQ+
Sbjct: 262 IMRA-----LFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQL 316
Query: 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
LQ+ V+++IATPGRL+D+++ + L V +V+DEAD ML MGF+ Q+ IL +
Sbjct: 317 YRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENI 374
Score = 198 (74.8 bits), Expect = 4.8e-55, Sum P(2) = 4.8e-55
Identities = 48/173 (27%), Positives = 87/173 (50%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITR 331
++I G +L + +RQ + V + K KL ++L D + +L+F+D K G D ++
Sbjct: 404 RIITGEKNLPCAN-VRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSE 462
Query: 332 QL-RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 390
+ ++ G ++SIH +KSQ ER +L G ++ +T V RGLD+ V+ V+N+D
Sbjct: 463 AVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDM 522
Query: 391 PGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
P S+++YVH F + R ++ ++ G + P+L
Sbjct: 523 PSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQL 575
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 389 (142.0 bits), Expect = 8.3e-55, Sum P(2) = 8.3e-55
Identities = 78/213 (36%), Positives = 127/213 (59%)
Query: 63 FYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEP 122
FY + + ++ I ++G+ VP+P+ F GFP+ + + +G+ P
Sbjct: 173 FYKDHSFILSLQDEQVENLKLQLGIAIQGQQVPRPIIEFEHCGFPETLNSNLKNSGYEVP 232
Query: 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182
TPIQ Q P+ L GRD++ A+TGSGKT A+LLP I+ V L + P L+LAPTR
Sbjct: 233 TPIQMQMIPVGLLGRDIVASADTGSGKTAAFLLPVIMKV-----LNETETPSALILAPTR 287
Query: 183 ELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN 241
ELA+QI++++ + A +++ + GG+P PQ+ L++ V+++IATPGRL+++L +
Sbjct: 288 ELAIQIERQAKELMAGLPNMRTVLLVGGLPLPPQLHRLKQSVKVIIATPGRLLEILRQSS 347
Query: 242 TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L + +V+DE D ML MGF+ Q+ IL +
Sbjct: 348 VQLHGIKIVVVDEVDTMLKMGFQQQVLDILEDI 380
Score = 203 (76.5 bits), Expect = 8.3e-55, Sum P(2) = 8.3e-55
Identities = 51/190 (26%), Positives = 95/190 (50%)
Query: 259 LDMGFEPQIKKILS---QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGS 314
+ +G E ++L ++ IG +L ++ +RQ + V E K KL ++L D +
Sbjct: 393 IPVGIEHLANQLLHNFVRITIGEKNLPCSN-VRQIILWVEEPSKKKKLFEILNDKKLFKP 451
Query: 315 RILIFMDTKKGCDQITRQL-RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 373
+L+F+D K G D ++ + ++ G S+H +KSQ ER +L K ++ +T V
Sbjct: 452 PVLVFVDCKLGADLLSDAVHKITGLQCTSMHSEKSQVERTAILQGLLQEKYEVIVSTGVL 511
Query: 374 ARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILE 433
RGLD+ +VK V+N+D P S+++YVH F + + +++ ++
Sbjct: 512 GRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFWDVVKRVK 571
Query: 434 EAGQKVSPEL 443
G + P+L
Sbjct: 572 PTGTILPPQL 581
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 390 (142.3 bits), Expect = 1.9e-54, Sum P(2) = 1.9e-54
Identities = 83/229 (36%), Positives = 133/229 (58%)
Query: 48 PRKLDLDGLTPFEKNF-YVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGF 106
P+K + P + Y E V+ + ITV GR VP+P+ F GF
Sbjct: 152 PQKAGSEPAAPGPAPYVYTEHAFVSHLREDQIENLRRQLGITVRGRGVPRPIVDFEHCGF 211
Query: 107 PDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF 166
P+ + + + +G+ PTPIQ Q P+ L GRD++ A+TGSGKT A+LLP I+
Sbjct: 212 PEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVILRA----- 266
Query: 167 LAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK-IKSTCIYGGVPKGPQVRDLQKGVEI 225
L+ P LVL PTRELA+QI++++ + + +++ + GG+P PQ L++ +++
Sbjct: 267 LSQSKSPSGLVLTPTRELAIQIERQAKELMSGLPCLRTALLVGGLPAPPQRHRLRQRIQV 326
Query: 226 VIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
+IATPGRL+D+++ + L + +V+DEAD ML MGF+ Q+ +L Q+
Sbjct: 327 IIATPGRLLDIIKQRSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQL 375
Score = 198 (74.8 bits), Expect = 1.9e-54, Sum P(2) = 1.9e-54
Identities = 47/160 (29%), Positives = 80/160 (50%)
Query: 286 AIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQL-RMDGWPALSI 343
++RQ V V E K KL ++L D + +L+F+D K G D ++ + ++ G + S+
Sbjct: 417 SVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTSV 476
Query: 344 HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXX 403
H DK+Q ER +L G ++ +T V RGLD+ VK V+N+D P S+++YVH
Sbjct: 477 HSDKTQMERKNILKGLLEGDYDVVVSTGVLGRGLDLVGVKLVVNFDMPSSMDEYVHQIGR 536
Query: 404 XXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
F + R ++ ++ G + P+L
Sbjct: 537 VGRLGQHGTAITFINNNSKRLFWDIAKRVKPTGSLLPPQL 576
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 332 (121.9 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 67/175 (38%), Positives = 106/175 (60%)
Query: 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157
++ F+ +G +++ ++ GF PTPIQ + P+ L+G +L+G A TG+GKT AYLLP
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 158 IVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217
+ + G VL++ PTRELA+Q+ E K G K+++ +YGG Q+R
Sbjct: 61 LQRIQR------GKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIR 114
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272
L++GVE+++ TPGR++D + + ++LDEAD MLDMGF I+ IL+
Sbjct: 115 GLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILN 169
Score = 247 (92.0 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 58/153 (37%), Positives = 83/153 (54%)
Query: 286 AIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG 345
AIRQ + E++K LV +L + + ++F TKK D++ QL G+ A +HG
Sbjct: 213 AIRQVYYELPETEKIEGLVSILNSELP-IQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHG 271
Query: 346 DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXX 405
D SQ ER + FKAGK+ ++ ATDVAARGLD+ DV +VIN+D P + E Y+H
Sbjct: 272 DMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTG 331
Query: 406 XXXXXXXXXXFFTAANARFAKELITILEEAGQK 438
T N R ++L+ +EEA K
Sbjct: 332 RAGREGKA---ITLINYR-ERKLLKAIEEAINK 360
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 332 (121.9 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 67/175 (38%), Positives = 106/175 (60%)
Query: 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157
++ F+ +G +++ ++ GF PTPIQ + P+ L+G +L+G A TG+GKT AYLLP
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 158 IVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217
+ + G VL++ PTRELA+Q+ E K G K+++ +YGG Q+R
Sbjct: 61 LQRIQR------GKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIR 114
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272
L++GVE+++ TPGR++D + + ++LDEAD MLDMGF I+ IL+
Sbjct: 115 GLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILN 169
Score = 247 (92.0 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 58/153 (37%), Positives = 83/153 (54%)
Query: 286 AIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG 345
AIRQ + E++K LV +L + + ++F TKK D++ QL G+ A +HG
Sbjct: 213 AIRQVYYELPETEKIEGLVSILNSELP-IQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHG 271
Query: 346 DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXX 405
D SQ ER + FKAGK+ ++ ATDVAARGLD+ DV +VIN+D P + E Y+H
Sbjct: 272 DMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTG 331
Query: 406 XXXXXXXXXXFFTAANARFAKELITILEEAGQK 438
T N R ++L+ +EEA K
Sbjct: 332 RAGREGKA---ITLINYR-ERKLLKAIEEAINK 360
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 374 (136.7 bits), Expect = 1.5e-53, Sum P(2) = 1.5e-53
Identities = 81/177 (45%), Positives = 109/177 (61%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
SF F VM + G+ EPTPIQAQ P L+G D+IG+A+TG+GKT AY LP I
Sbjct: 2 SFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVI- 60
Query: 160 HVNAQPFLAPGDGPI-VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
Q L+ G + LVLAPTRELA QI + G ++I+ IYGGV Q+R
Sbjct: 61 ----QKMLSTPRGRVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRR 116
Query: 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVI 275
L+ GV++V+A PGRL+D + ++ V L++DEADRM DMGF+P I+ IL ++
Sbjct: 117 LRSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLV 173
Score = 201 (75.8 bits), Expect = 1.5e-53, Sum P(2) = 1.5e-53
Identities = 46/136 (33%), Positives = 72/136 (52%)
Query: 264 EPQIKKILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTK 323
E Q + Q+ +P +H++ V QK L+++L+ S +LIF TK
Sbjct: 195 ETQTNPVTIQIGTQAPASSVSHSVYP----VKNHQKTPLLIEILKTTETKS-VLIFARTK 249
Query: 324 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK 383
G + + ++ G+ S+ G+ SQ R V+ F+ G I+ ATD+AARGLD+ +
Sbjct: 250 YGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLDIDHIS 309
Query: 384 YVINYDFPGSLEDYVH 399
+VINYD P + EDY H
Sbjct: 310 HVINYDMPDTPEDYTH 325
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 375 (137.1 bits), Expect = 1.7e-53, Sum P(2) = 1.7e-53
Identities = 78/194 (40%), Positives = 123/194 (63%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
IT +G+++P P++ + + D ++ IS+ G+ EPT +Q P+ALK RD++G+AETG
Sbjct: 156 ITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETG 215
Query: 147 SGKTLAYLLPAIVHV-----NAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201
SGKTLA+L+P + ++ N + + P+ L+LAPTRELA+QI +E+ KF
Sbjct: 216 SGKTLAFLIPVLNYILSIDENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKLGY 275
Query: 202 KSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260
+ I GG + + Q GV +++ATPGRL+D +E +L + LV+DEADRM+D
Sbjct: 276 QVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMID 335
Query: 261 MGFEPQIKKILSQV 274
MGFE + K+L ++
Sbjct: 336 MGFEKDLNKVLDKL 349
Score = 202 (76.2 bits), Expect = 1.7e-53, Sum P(2) = 1.7e-53
Identities = 42/148 (28%), Positives = 78/148 (52%)
Query: 295 SESQKYNKLVKLLED---IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAE 351
+E+ K+NKL+K++ + + I+IF + K CD ++++L + + IHG KSQ
Sbjct: 420 TEATKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDM 479
Query: 352 RDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXX 411
R+ ++ F+ +S ++ ATDVAARG+D+ +V VINY ++Y+H
Sbjct: 480 REQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLG 539
Query: 412 XXXXFFTAANARFAKELITILEEAGQKV 439
F + + L L++ G+++
Sbjct: 540 ESFTFISDQDTEIFTPLKKFLKKGGKRL 567
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 375 (137.1 bits), Expect = 1.7e-53, Sum P(2) = 1.7e-53
Identities = 78/194 (40%), Positives = 123/194 (63%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
IT +G+++P P++ + + D ++ IS+ G+ EPT +Q P+ALK RD++G+AETG
Sbjct: 156 ITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETG 215
Query: 147 SGKTLAYLLPAIVHV-----NAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201
SGKTLA+L+P + ++ N + + P+ L+LAPTRELA+QI +E+ KF
Sbjct: 216 SGKTLAFLIPVLNYILSIDENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKLGY 275
Query: 202 KSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260
+ I GG + + Q GV +++ATPGRL+D +E +L + LV+DEADRM+D
Sbjct: 276 QVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMID 335
Query: 261 MGFEPQIKKILSQV 274
MGFE + K+L ++
Sbjct: 336 MGFEKDLNKVLDKL 349
Score = 202 (76.2 bits), Expect = 1.7e-53, Sum P(2) = 1.7e-53
Identities = 42/148 (28%), Positives = 78/148 (52%)
Query: 295 SESQKYNKLVKLLED---IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAE 351
+E+ K+NKL+K++ + + I+IF + K CD ++++L + + IHG KSQ
Sbjct: 420 TEATKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDM 479
Query: 352 RDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXX 411
R+ ++ F+ +S ++ ATDVAARG+D+ +V VINY ++Y+H
Sbjct: 480 REQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLG 539
Query: 412 XXXXFFTAANARFAKELITILEEAGQKV 439
F + + L L++ G+++
Sbjct: 540 ESFTFISDQDTEIFTPLKKFLKKGGKRL 567
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 546 (197.3 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
Identities = 114/253 (45%), Positives = 162/253 (64%)
Query: 59 FEKNFYVESPSVAAMSXXXXXXXXXXX-XITVEGRDVPKPVKSFRDVGFPDYVMQEISKA 117
F+KNFY+E+ + M+ ITV+G D PKP+K++ G +M + K
Sbjct: 263 FKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKKF 322
Query: 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177
+ +PT IQAQ P + GRD+IGIA+TGSGKTLA+LLP H+ QP L GDGPI ++
Sbjct: 323 EYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVI 382
Query: 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML 237
LAPTRELA+Q +E+ KF +K C YGGV Q+ DL++G EIV+ TPGR+ID+L
Sbjct: 383 LAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVL 442
Query: 238 ESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIV 294
+++ TNLRRVTYLVLDEADRM D GFEPQI K+++ + + + +H++ +
Sbjct: 443 AANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRHMEAL 502
Query: 295 SESQKYNKLVKLL 307
+ + +K V++L
Sbjct: 503 AR-KVLDKPVEIL 514
Score = 239 (89.2 bits), Expect = 4.6e-17, P = 4.6e-17
Identities = 60/188 (31%), Positives = 97/188 (51%)
Query: 264 EPQIKKILS---QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFM 320
E +K+L ++++G + + I Q+ I +E QK+ KL++LL + ++F+
Sbjct: 500 EALARKVLDKPVEILVGGKSVVCSD-ITQNAVICAEHQKFLKLLELLGMYYEEGSSIVFV 558
Query: 321 DTKKGCDQITRQLRMDGWPALS-IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 379
D ++ D I QL G+ +++ +HG Q +RD +++FK G ++ AT VAARGLDV
Sbjct: 559 DKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDV 618
Query: 380 KDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANA-RFAKELITILEEAGQK 438
K++ V+NYD P EDYVH F + + A E+ E AG K
Sbjct: 619 KNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFETAGCK 678
Query: 439 VSPELAAM 446
+L AM
Sbjct: 679 PPADLKAM 686
Score = 39 (18.8 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 421 NARFAKE-LITILEEAGQKVSPELAAMGRGA 450
N + AKE +I I++EA ++++ +L G A
Sbjct: 936 NLKAAKEEIIRIMKEAFRQLTAQLQRGGTQA 966
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 369 (135.0 bits), Expect = 3.1e-53, Sum P(2) = 3.1e-53
Identities = 76/180 (42%), Positives = 113/180 (62%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
SF +G + +++ I AG+ +PTP+Q + P L+GRDL+ A+TG+GKT + LP +
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 160 HV--NAQPFLAPGDGPI---VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214
+ N P + GP VLVL PTRELA Q+ + + K S CI+GGV P
Sbjct: 62 RLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNP 121
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
QV+ + +GV++++A PGRL+D+ + +L V LVLDEADRMLDMGF +KK+L+++
Sbjct: 122 QVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181
Score = 210 (79.0 bits), Expect = 3.1e-53, Sum P(2) = 3.1e-53
Identities = 45/113 (39%), Positives = 69/113 (61%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
I Q V ++ + K + L L+ + ++L+F TK G +++ L G A++IHG+
Sbjct: 224 IEQRVFRLAANHKRSLLAHLIT-VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGN 282
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
KSQ R L++FKAG IM ATD+AARGLD+ + +V+N++ P EDYVH
Sbjct: 283 KSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVH 335
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 364 (133.2 bits), Expect = 3.9e-53, Sum P(3) = 3.9e-53
Identities = 75/185 (40%), Positives = 115/185 (62%)
Query: 91 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKT 150
G +V +PV F+ FP + + + AG+ PTP+Q Q P+ L GRD+I A+TGSGKT
Sbjct: 162 GTEVCRPVIEFQHCRFPTVLERNLKAAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKT 221
Query: 151 LAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGG 209
+A+LLP ++ +P P L+L PTRELA+QI++++ + +++ + GG
Sbjct: 222 VAFLLPVVMRALQSESASPSC-PACLILTPTRELAIQIEEQAKELMRGLPNMRTALLVGG 280
Query: 210 VPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKK 269
+P PQ+ L+ ++IVI TPGRL+++L+ L V +V+DEAD ML MGF+ Q+
Sbjct: 281 MPLPPQLHRLKHNIKIVIGTPGRLLEILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLD 340
Query: 270 ILSQV 274
IL QV
Sbjct: 341 ILEQV 345
Score = 190 (71.9 bits), Expect = 3.9e-53, Sum P(3) = 3.9e-53
Identities = 44/159 (27%), Positives = 80/159 (50%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQL-RMDGWPALSIH 344
+RQ V V E K KL ++L D + +++F+D K G D + + ++ ++IH
Sbjct: 388 VRQIVLWVEEPSKKKKLFEILNDEKLYQPPVVVFVDCKLGADLLCEAVQKVMSLNTVAIH 447
Query: 345 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXX 404
DK Q ER+ ++ G+ ++ +T + RGLD+ +VK VIN+D P ++++YVH
Sbjct: 448 SDKMQWERNKIVKGLLEGQFDVVISTGILGRGLDLVNVKLVINFDMPSNMDEYVHQIGRA 507
Query: 405 XXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
F N R E++ ++ G + P++
Sbjct: 508 GRLGHRGTAITFMNNNNKRLFLEMVKRVKPTGSILPPQI 546
Score = 37 (18.1 bits), Expect = 3.9e-53, Sum P(3) = 3.9e-53
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 90 EGRDVPKPVKSFR 102
E +++ +PVKSF+
Sbjct: 53 EQQEIEEPVKSFK 65
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 558 (201.5 bits), Expect = 4.5e-53, P = 4.5e-53
Identities = 109/221 (49%), Positives = 148/221 (66%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGRDVPKPVKSFRDVGFPDYVMQEISK 116
PF KNFYVE P +A MS ITV+G+ PKP+KS+ G ++ + K
Sbjct: 330 PFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKK 389
Query: 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176
G+ +PTPIQ Q P + GRDLIGIA+TGSGKT+A+LLP H+ Q L G+GPI +
Sbjct: 390 HGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAV 449
Query: 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM 236
++ PTRELA+QI +E KF + ++ C+YGG Q+ +L++G EI++ TPGR+IDM
Sbjct: 450 IMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 509
Query: 237 LESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L +++ TNLRRVTY+VLDEADRM DMGFEPQ+ +I+ V
Sbjct: 510 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Score = 287 (106.1 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 72/236 (30%), Positives = 119/236 (50%)
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF----EPQIKKI 270
+V +L++ +V+ R+ DM +R V + D M F E ++I
Sbjct: 516 RVTNLRRVTYVVLDEADRMFDMGFEPQV-MRIVDNVRPDRQTVMFSATFPRAMEALARRI 574
Query: 271 LSQVI---IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 327
LS+ I +G + + + Q V ++ E +K+ KL++LL + ++IF+D ++ D
Sbjct: 575 LSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHAD 633
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+ + L +P +S+HG Q +RD ++++FK G ++ AT VAARGLDVK + V+N
Sbjct: 634 GLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
Y P EDYVH F T AR+A ++I LE +G V P+L
Sbjct: 694 YSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDL 749
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 558 (201.5 bits), Expect = 4.5e-53, P = 4.5e-53
Identities = 109/221 (49%), Positives = 148/221 (66%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGRDVPKPVKSFRDVGFPDYVMQEISK 116
PF KNFYVE P +A MS ITV+G+ PKP+KS+ G ++ + K
Sbjct: 330 PFRKNFYVEVPELAKMSLEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKK 389
Query: 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176
G+ +PTPIQ Q P + GRDLIGIA+TGSGKT+A+LLP H+ Q L G+GPI +
Sbjct: 390 HGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAV 449
Query: 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM 236
++ PTRELA+QI +E KF + ++ C+YGG Q+ +L++G EI++ TPGR+IDM
Sbjct: 450 IMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 509
Query: 237 LESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L +++ TNLRRVTY+VLDEADRM DMGFEPQ+ +I+ V
Sbjct: 510 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Score = 287 (106.1 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 72/236 (30%), Positives = 119/236 (50%)
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF----EPQIKKI 270
+V +L++ +V+ R+ DM +R V + D M F E ++I
Sbjct: 516 RVTNLRRVTYVVLDEADRMFDMGFEPQV-MRIVDNVRPDRQTVMFSATFPRAMEALARRI 574
Query: 271 LSQVI---IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 327
LS+ I +G + + + Q V ++ E +K+ KL++LL + ++IF+D ++ D
Sbjct: 575 LSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHAD 633
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+ + L +P +S+HG Q +RD ++++FK G ++ AT VAARGLDVK + V+N
Sbjct: 634 GLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
Y P EDYVH F T AR+A ++I LE +G V P+L
Sbjct: 694 YSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDL 749
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 558 (201.5 bits), Expect = 4.5e-53, P = 4.5e-53
Identities = 109/221 (49%), Positives = 148/221 (66%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGRDVPKPVKSFRDVGFPDYVMQEISK 116
PF KNFYVE P +A MS ITV+G+ PKP+KS+ G ++ + K
Sbjct: 330 PFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKK 389
Query: 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176
G+ +PTPIQ Q P + GRDLIGIA+TGSGKT+A+LLP H+ Q L G+GPI +
Sbjct: 390 HGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAV 449
Query: 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM 236
++ PTRELA+QI +E KF + ++ C+YGG Q+ +L++G EI++ TPGR+IDM
Sbjct: 450 IMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 509
Query: 237 LESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L +++ TNLRRVTY+VLDEADRM DMGFEPQ+ +I+ V
Sbjct: 510 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Score = 287 (106.1 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 72/236 (30%), Positives = 119/236 (50%)
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF----EPQIKKI 270
+V +L++ +V+ R+ DM +R V + D M F E ++I
Sbjct: 516 RVTNLRRVTYVVLDEADRMFDMGFEPQV-MRIVDNVRPDRQTVMFSATFPRAMEALARRI 574
Query: 271 LSQVI---IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 327
LS+ I +G + + + Q V ++ E +K+ KL++LL + ++IF+D ++ D
Sbjct: 575 LSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHAD 633
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+ + L +P +S+HG Q +RD ++++FK G ++ AT VAARGLDVK + V+N
Sbjct: 634 GLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
Y P EDYVH F T AR+A ++I LE +G V P+L
Sbjct: 694 YSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDL 749
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 558 (201.5 bits), Expect = 4.5e-53, P = 4.5e-53
Identities = 109/221 (49%), Positives = 148/221 (66%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGRDVPKPVKSFRDVGFPDYVMQEISK 116
PF KNFYVE P +A MS ITV+G+ PKP+KS+ G ++ + K
Sbjct: 330 PFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKK 389
Query: 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176
G+ +PTPIQ Q P + GRDLIGIA+TGSGKT+A+LLP H+ Q L G+GPI +
Sbjct: 390 HGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAV 449
Query: 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM 236
++ PTRELA+QI +E KF + ++ C+YGG Q+ +L++G EI++ TPGR+IDM
Sbjct: 450 IMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 509
Query: 237 LESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L +++ TNLRRVTY+VLDEADRM DMGFEPQ+ +I+ V
Sbjct: 510 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Score = 287 (106.1 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 72/236 (30%), Positives = 119/236 (50%)
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF----EPQIKKI 270
+V +L++ +V+ R+ DM +R V + D M F E ++I
Sbjct: 516 RVTNLRRVTYVVLDEADRMFDMGFEPQV-MRIVDNVRPDRQTVMFSATFPRAMEALARRI 574
Query: 271 LSQVI---IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 327
LS+ I +G + + + Q V ++ E +K+ KL++LL + ++IF+D ++ D
Sbjct: 575 LSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHAD 633
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+ + L +P +S+HG Q +RD ++++FK G ++ AT VAARGLDVK + V+N
Sbjct: 634 GLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
Y P EDYVH F T AR+A ++I LE +G V P+L
Sbjct: 694 YSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDL 749
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 558 (201.5 bits), Expect = 4.5e-53, P = 4.5e-53
Identities = 109/221 (49%), Positives = 148/221 (66%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGRDVPKPVKSFRDVGFPDYVMQEISK 116
PF KNFYVE P +A MS ITV+G+ PKP+KS+ G ++ + K
Sbjct: 330 PFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKK 389
Query: 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176
G+ +PTPIQ Q P + GRDLIGIA+TGSGKT+A+LLP H+ Q L G+GPI +
Sbjct: 390 HGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAV 449
Query: 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM 236
++ PTRELA+QI +E KF + ++ C+YGG Q+ +L++G EI++ TPGR+IDM
Sbjct: 450 IMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 509
Query: 237 LESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L +++ TNLRRVTY+VLDEADRM DMGFEPQ+ +I+ V
Sbjct: 510 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Score = 287 (106.1 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 72/236 (30%), Positives = 119/236 (50%)
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF----EPQIKKI 270
+V +L++ +V+ R+ DM +R V + D M F E ++I
Sbjct: 516 RVTNLRRVTYVVLDEADRMFDMGFEPQV-MRIVDNVRPDRQTVMFSATFPRAMEALARRI 574
Query: 271 LSQVI---IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 327
LS+ I +G + + + Q V ++ E +K+ KL++LL + ++IF+D ++ D
Sbjct: 575 LSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHAD 633
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+ + L +P +S+HG Q +RD ++++FK G ++ AT VAARGLDVK + V+N
Sbjct: 634 GLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
Y P EDYVH F T AR+A ++I LE +G V P+L
Sbjct: 694 YSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDL 749
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 558 (201.5 bits), Expect = 4.5e-53, P = 4.5e-53
Identities = 109/221 (49%), Positives = 148/221 (66%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGRDVPKPVKSFRDVGFPDYVMQEISK 116
PF KNFYVE P +A MS ITV+G+ PKP+KS+ G ++ + K
Sbjct: 330 PFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKK 389
Query: 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176
G+ +PTPIQ Q P + GRDLIGIA+TGSGKT+A+LLP H+ Q L G+GPI +
Sbjct: 390 HGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAV 449
Query: 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM 236
++ PTRELA+QI +E KF + ++ C+YGG Q+ +L++G EI++ TPGR+IDM
Sbjct: 450 IMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 509
Query: 237 LESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L +++ TNLRRVTY+VLDEADRM DMGFEPQ+ +I+ V
Sbjct: 510 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Score = 287 (106.1 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 72/236 (30%), Positives = 119/236 (50%)
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF----EPQIKKI 270
+V +L++ +V+ R+ DM +R V + D M F E ++I
Sbjct: 516 RVTNLRRVTYVVLDEADRMFDMGFEPQV-MRIVDNVRPDRQTVMFSATFPRAMEALARRI 574
Query: 271 LSQVI---IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 327
LS+ I +G + + + Q V ++ E +K+ KL++LL + ++IF+D ++ D
Sbjct: 575 LSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHAD 633
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+ + L +P +S+HG Q +RD ++++FK G ++ AT VAARGLDVK + V+N
Sbjct: 634 GLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
Y P EDYVH F T AR+A ++I LE +G V P+L
Sbjct: 694 YSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDL 749
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 558 (201.5 bits), Expect = 4.5e-53, P = 4.5e-53
Identities = 109/221 (49%), Positives = 148/221 (66%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGRDVPKPVKSFRDVGFPDYVMQEISK 116
PF KNFYVE P +A MS ITV+G+ PKP+KS+ G ++ + K
Sbjct: 330 PFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKK 389
Query: 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176
G+ +PTPIQ Q P + GRDLIGIA+TGSGKT+A+LLP H+ Q L G+GPI +
Sbjct: 390 HGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAV 449
Query: 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM 236
++ PTRELA+QI +E KF + ++ C+YGG Q+ +L++G EI++ TPGR+IDM
Sbjct: 450 IMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 509
Query: 237 LESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L +++ TNLRRVTY+VLDEADRM DMGFEPQ+ +I+ V
Sbjct: 510 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Score = 287 (106.1 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 72/236 (30%), Positives = 119/236 (50%)
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF----EPQIKKI 270
+V +L++ +V+ R+ DM +R V + D M F E ++I
Sbjct: 516 RVTNLRRVTYVVLDEADRMFDMGFEPQV-MRIVDNVRPDRQTVMFSATFPRAMEALARRI 574
Query: 271 LSQVI---IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 327
LS+ I +G + + + Q V ++ E +K+ KL++LL + ++IF+D ++ D
Sbjct: 575 LSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHAD 633
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+ + L +P +S+HG Q +RD ++++FK G ++ AT VAARGLDVK + V+N
Sbjct: 634 GLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
Y P EDYVH F T AR+A ++I LE +G V P+L
Sbjct: 694 YSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDL 749
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 556 (200.8 bits), Expect = 7.4e-53, P = 7.4e-53
Identities = 108/221 (48%), Positives = 149/221 (67%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGRDVPKPVKSFRDVGFPDYVMQEISK 116
PF KNFYVE P +A M+ ITV+G+ PKP+K++ G ++ + K
Sbjct: 329 PFRKNFYVEVPELAKMTQEEVNVYRLEMEGITVKGKGCPKPIKTWVQCGISMKILTALKK 388
Query: 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176
G+ +PTPIQ+Q P + GRDLIGIA+TGSGKT+A+LLP H+ Q L G+GPI +
Sbjct: 389 HGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAV 448
Query: 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM 236
++ PTRELA+QI +E KF + ++ C+YGG Q+ +L++G EI++ TPGR+IDM
Sbjct: 449 IMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 508
Query: 237 LESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L ++N TNLRRVTY+VLDEADRM DMGFEPQ+ +I+ V
Sbjct: 509 LAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 549
Score = 289 (106.8 bits), Expect = 3.4e-24, P = 3.4e-24
Identities = 72/236 (30%), Positives = 118/236 (50%)
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF----EPQIKKI 270
+V +L++ +V+ R+ DM +R V + D M F E ++I
Sbjct: 515 RVTNLRRVTYVVLDEADRMFDMGFEPQV-MRIVDNVRPDRQTVMFSATFPRAMEALARRI 573
Query: 271 LSQVI---IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 327
LS+ I +G + + + QHV ++ E K+ KL++LL + ++IF+D ++ D
Sbjct: 574 LSKPIEVQVGGRSVVCSD-VEQHVIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHAD 632
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+ + L +P LS+HG Q +RD ++++FK G ++ AT VAARGLDVK + V+N
Sbjct: 633 GLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVN 692
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
Y P EDYVH F T AR+A ++I LE +G + +L
Sbjct: 693 YSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKALELSGNPIPADL 748
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 373 (136.4 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 80/176 (45%), Positives = 112/176 (63%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F+ GF V I+ AG+ PTPIQAQ P + GRD++G+A+TG+GKT A+ LP I+H
Sbjct: 3 FKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALP-ILH 61
Query: 161 VNAQPFLAPGD-GPI-VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
L G+ G + LV+APTRELA QI G ++++S +YGGV PQV+
Sbjct: 62 R-----LQQGERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQK 116
Query: 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L+ G E+V+A PGRL+D + +L R+ LVLDEAD+M DMGF P I+++L +
Sbjct: 117 LKAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHL 172
Score = 191 (72.3 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 48/133 (36%), Positives = 69/133 (51%)
Query: 267 IKKILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGC 326
+ + QV +P + HA+ V + K L++LL D +LIF TK
Sbjct: 198 VDPVTVQVGTVAPAVTVAHALYP----VEQHLKTPLLLELLRHT-DTESVLIFTRTKHRA 252
Query: 327 DQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 386
++ QL G+ A S+ G+ SQ R L F+ G I+ ATD+AARG+DV V +VI
Sbjct: 253 KRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDVSQVSHVI 312
Query: 387 NYDFPGSLEDYVH 399
NYD P + E Y+H
Sbjct: 313 NYDIPDTAEAYIH 325
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 368 (134.6 bits), Expect = 1.6e-52, Sum P(2) = 1.6e-52
Identities = 83/207 (40%), Positives = 124/207 (59%)
Query: 74 SXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGF-PDYVMQEISKAGFFEPTPIQAQGWPM 132
S IT D K+F+++ PD +++ I F +PTPIQ++ P
Sbjct: 98 SSLSSSSSTTSSSITTIDPDAELKFKTFKELNLVPD-LLESIESMKFTKPTPIQSEAIPH 156
Query: 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHV-NAQ-PFLAPGDGPIVLVLAPTRELAVQIQQ 190
AL+G+D+IG+A+TGSGKT A+ +P + + +AQ P+ A LVLAPTREL QI+
Sbjct: 157 ALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYFA-------LVLAPTRELTFQIKD 209
Query: 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE-SHNTNLRRVTY 249
G+S ++S+CI GG+ Q RDL + +++ATPGR++D LE + +L+ + Y
Sbjct: 210 TFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKY 269
Query: 250 LVLDEADRMLDMGFEPQIKKILSQVII 276
LV+DEADR+LDM F P + KIL + I
Sbjct: 270 LVMDEADRLLDMDFGPALDKILKVIPI 296
Score = 195 (73.7 bits), Expect = 1.6e-52, Sum P(2) = 1.6e-52
Identities = 49/156 (31%), Positives = 84/156 (53%)
Query: 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKL 303
++R TYL ++ + + +V + S A++ + Q + +V++ K L
Sbjct: 296 IKRTTYLFSATMTNKIEKLQRASLHNPV-RVAVSSKYQTADNLV-QSMMLVNDGYKNTIL 353
Query: 304 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK 363
+ LL + M G I++F T + R+ G+ A+ +HG SQ++R L++FK+ +
Sbjct: 354 IHLLNEFM-GKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQ 412
Query: 364 SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
+ I+ ATDVAARGLD+ V VINYD P + Y+H
Sbjct: 413 ANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIH 448
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 116/261 (44%), Positives = 160/261 (61%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKA 117
PFEKNFY E + +++ + V G P+P SF GF + +M +I K+
Sbjct: 207 PFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKS 266
Query: 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177
+ +PTPIQ QG P+A+ GRD+IGIA+TGSGKT A++ P ++H+ Q L PGDGPI ++
Sbjct: 267 EYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVI 326
Query: 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML 237
+ PTREL QI E +FG + ++S +YGG Q + LQ+G EIV+ TPGRLID +
Sbjct: 327 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 386
Query: 238 ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSES 297
+ TNL+RVTYLV DEADRM DMGFE Q++ I S V PD RQ + +
Sbjct: 387 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHV---RPD-------RQTLLFSATF 436
Query: 298 QKYNKLVKLLEDIM-DGSRIL 317
+K K+ KL DI+ D R++
Sbjct: 437 RK--KIEKLARDILIDPIRVV 455
Score = 261 (96.9 bits), Expect = 6.5e-20, P = 6.5e-20
Identities = 71/242 (29%), Positives = 114/242 (47%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQVII 276
+LQ+ +V R+ DM +R + V + +L F +I+K+ ++I
Sbjct: 392 NLQRVTYLVFDEADRMFDM--GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILI 449
Query: 277 G-----SPDL-KANHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI 329
D+ +AN + Q V+I S K+N L + L + +L+F+ K +++
Sbjct: 450 DPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEEL 509
Query: 330 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD 389
L+ + +HGD Q+ER+ V+SEFK PI+ ATDVAARGLD+ +K VINYD
Sbjct: 510 ANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYD 569
Query: 390 FPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMGRG 449
++ + H T ++ FA +L+ LE A Q VS EL +
Sbjct: 570 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 629
Query: 450 AP 451
P
Sbjct: 630 NP 631
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 554 (200.1 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 109/231 (47%), Positives = 151/231 (65%)
Query: 50 KLDLDGLT--PFEKNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGRDVPKPVKSFRDVGF 106
K+D +T PF KNFYVE P + M+ I V+G+ PKP+K++ G
Sbjct: 458 KIDHSSVTYAPFRKNFYVEVPELTRMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGV 517
Query: 107 PDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF 166
M+ + + GF +PTPIQ Q P + GRDLIGIA+TGSGKTLA++LP H+ QP
Sbjct: 518 SKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPS 577
Query: 167 LAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIV 226
+ GDG I +++APTREL +QI ++ KF S ++ C+YGG Q+ +L++G EI+
Sbjct: 578 MEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEII 637
Query: 227 IATPGRLIDMLESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
+ TPGR+IDML +++ TNLRRVTY+VLDEADRM DMGFEPQ+ +I+ V
Sbjct: 638 VCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNV 688
Score = 300 (110.7 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 73/239 (30%), Positives = 123/239 (51%)
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQI----KKI 270
+V +L++ +V+ R+ DM +R + + D M F Q+ ++I
Sbjct: 654 RVTNLRRVTYVVLDEADRMFDMGFEPQV-MRIIDNVRPDRQTVMFSATFPRQMEALARRI 712
Query: 271 LS---QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 327
L +VI+G + + QHV I+++ K+ KL++LL + I++F+D ++ D
Sbjct: 713 LKKPIEVIVGGRSVVCKE-VEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFVDKQENAD 771
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+ R L +P +S+HG Q +RD + +FK+GK ++ AT VAARGLDVKD+ V+N
Sbjct: 772 ILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVN 831
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
YD P EDYVH F T +R+A ++I ++ +G + EL A+
Sbjct: 832 YDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGTLIPAELQAL 890
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 312 (114.9 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 70/176 (39%), Positives = 102/176 (57%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
SF + ++ +++ G+ +PTPIQ + P L +D++ A+TG+GKT A+ LP +
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 160 HVNAQPFLAPGDGPI-VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
+ A I LVL PTRELA+Q+QQ K+ + I+ YGGV Q
Sbjct: 62 LLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAV 121
Query: 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
G++++IATPGRL+D L NL ++ LV DEADRMLDMGF +I+ +L QV
Sbjct: 122 FNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQV 177
Score = 248 (92.4 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 61/190 (32%), Positives = 95/190 (50%)
Query: 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 304
+R T L D + F + + ++ + P+ A I Q V + +K + V
Sbjct: 180 QRQTLLFSATLDDSI-FSFSKNLLRDPKRIEVAKPNTTAAQ-IEQRVYAIDSDRK-TEFV 236
Query: 305 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 364
L + ++LIF TK+G D++T QL G S HGD SQ R+ VL EFK G
Sbjct: 237 SHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLV 296
Query: 365 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARF 424
++ ATDVAARGLD+ +++YVIN++ P EDY+H F+ +A
Sbjct: 297 QVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALL 356
Query: 425 AKELITILEE 434
+E+ T+L++
Sbjct: 357 LEEVETLLDK 366
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 312 (114.9 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 70/176 (39%), Positives = 102/176 (57%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
SF + ++ +++ G+ +PTPIQ + P L +D++ A+TG+GKT A+ LP +
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 160 HVNAQPFLAPGDGPI-VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
+ A I LVL PTRELA+Q+QQ K+ + I+ YGGV Q
Sbjct: 62 LLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAV 121
Query: 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
G++++IATPGRL+D L NL ++ LV DEADRMLDMGF +I+ +L QV
Sbjct: 122 FNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQV 177
Score = 248 (92.4 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 61/190 (32%), Positives = 95/190 (50%)
Query: 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 304
+R T L D + F + + ++ + P+ A I Q V + +K + V
Sbjct: 180 QRQTLLFSATLDDSI-FSFSKNLLRDPKRIEVAKPNTTAAQ-IEQRVYAIDSDRK-TEFV 236
Query: 305 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 364
L + ++LIF TK+G D++T QL G S HGD SQ R+ VL EFK G
Sbjct: 237 SHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLV 296
Query: 365 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARF 424
++ ATDVAARGLD+ +++YVIN++ P EDY+H F+ +A
Sbjct: 297 QVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALL 356
Query: 425 AKELITILEE 434
+E+ T+L++
Sbjct: 357 LEEVETLLDK 366
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 550 (198.7 bits), Expect = 3.9e-52, P = 3.9e-52
Identities = 107/211 (50%), Positives = 148/211 (70%)
Query: 64 YVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPT 123
+V SP V +S +T G ++P P +F G P +++E+ AGF PT
Sbjct: 402 FVTSPDVPHLSPVEIYRKQHE--VTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPT 459
Query: 124 PIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183
PIQAQ WP+AL+ RD++ IA+TGSGKTL YL+PA + + +GP VL+LAPTRE
Sbjct: 460 PIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLR-HCRNDSRNGPTVLILAPTRE 518
Query: 184 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTN 243
LA QIQ E+ +FG SS+I TC+YGG PKGPQ+++L++G +IV+ATPGRL D+LE +
Sbjct: 519 LATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMID 578
Query: 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
++V+ LVLDEADRMLDMGFEPQI+KI++++
Sbjct: 579 FQQVSLLVLDEADRMLDMGFEPQIRKIVNEI 609
Score = 400 (145.9 bits), Expect = 4.9e-36, P = 4.9e-36
Identities = 94/248 (37%), Positives = 143/248 (57%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP-QIKKILS---- 272
D Q+ +V+ R++DM +R++ + ++ P +++KI S
Sbjct: 578 DFQQVSLLVLDEADRMLDM--GFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLV 635
Query: 273 ---QVIIGSPD-LKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQ 328
QV IG D L AN AI Q+V++V + +K +L ++L GS+++IF TK+ CD
Sbjct: 636 NPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRLCDH 695
Query: 329 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 388
+ R + + A+ IHGDK+Q ERDWVL++F++GKS ++ ATDVAARGLD+KD++ VINY
Sbjct: 696 LARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINY 754
Query: 389 DFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELA--AM 446
DFP +EDYVH FFT + ++A +LI +LE A Q+V P++ AM
Sbjct: 755 DFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAM 814
Query: 447 ---GRGAP 451
G G P
Sbjct: 815 RGGGGGGP 822
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 365 (133.5 bits), Expect = 4.7e-52, Sum P(2) = 4.7e-52
Identities = 76/180 (42%), Positives = 111/180 (61%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
SF +G + ++ I AG+ +PTP+Q + P L+GRDL+ A+TG+GKT + LP +
Sbjct: 2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 160 HV--NAQPFLAPGDGPI---VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214
+ N P + GP VLVL PTRELA Q+ + K S CI+GGV P
Sbjct: 62 RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNP 121
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
QV+ + +GV++++A PGRL+D+ + +L V LVLDEADRMLDMGF +KK+L+++
Sbjct: 122 QVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181
Score = 203 (76.5 bits), Expect = 4.7e-52, Sum P(2) = 4.7e-52
Identities = 38/85 (44%), Positives = 58/85 (68%)
Query: 315 RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 374
++L+F TK G +++ L G A++IHG+KSQ R L++FKAG+ I+ ATD+AA
Sbjct: 251 QVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRILVATDIAA 310
Query: 375 RGLDVKDVKYVINYDFPGSLEDYVH 399
RGLD+ + +V+N++ P EDYVH
Sbjct: 311 RGLDIDQLPHVVNFELPNVDEDYVH 335
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 544 (196.6 bits), Expect = 1.0e-51, P = 1.0e-51
Identities = 116/261 (44%), Positives = 160/261 (61%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKA 117
PFEKNFY E + +++ + V G P+P SF GF + +M +I K+
Sbjct: 214 PFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKS 273
Query: 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177
+ +PTPIQ QG P+A+ GRD+IGIA+TGSGKT A++ P ++H+ Q L PGDGPI ++
Sbjct: 274 EYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVI 333
Query: 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML 237
+ PTREL QI E +FG + ++S +YGG Q + LQ+G EIV+ TPGRLID +
Sbjct: 334 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 393
Query: 238 ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSES 297
+ TNL+RVTYLV DEADRM DMGFE Q++ I S V PD RQ + +
Sbjct: 394 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHV---RPD-------RQTLLFSATF 443
Query: 298 QKYNKLVKLLEDIM-DGSRIL 317
+K K+ KL DI+ D R++
Sbjct: 444 RK--KIEKLARDILIDPIRVV 462
Score = 261 (96.9 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 71/242 (29%), Positives = 114/242 (47%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQVII 276
+LQ+ +V R+ DM +R + V + +L F +I+K+ ++I
Sbjct: 399 NLQRVTYLVFDEADRMFDM--GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILI 456
Query: 277 G-----SPDL-KANHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI 329
D+ +AN + Q V+I S K+N L + L + +L+F+ K +++
Sbjct: 457 DPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEEL 516
Query: 330 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD 389
L+ + +HGD Q+ER+ V+SEFK PI+ ATDVAARGLD+ +K VINYD
Sbjct: 517 ANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYD 576
Query: 390 FPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMGRG 449
++ + H T ++ FA +L+ LE A Q VS EL +
Sbjct: 577 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 636
Query: 450 AP 451
P
Sbjct: 637 NP 638
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 543 (196.2 bits), Expect = 1.3e-51, P = 1.3e-51
Identities = 116/261 (44%), Positives = 160/261 (61%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKA 117
PFEKNFY E + +++ + V G P+P SF GF + +M +I K+
Sbjct: 212 PFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFARFGFDEQLMHQIRKS 271
Query: 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177
+ +PTPIQ QG P+A+ GRD+IGIA+TGSGKT A++ P ++H+ Q L PGDGPI ++
Sbjct: 272 EYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVI 331
Query: 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML 237
+ PTREL QI E +FG + ++S +YGG Q + LQ+G EIV+ TPGRLID +
Sbjct: 332 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 238 ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSES 297
+ TNL+RVTYLV DEADRM DMGFE Q++ I S V PD RQ + +
Sbjct: 392 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHV---RPD-------RQTLLFSATF 441
Query: 298 QKYNKLVKLLEDIM-DGSRIL 317
+K K+ KL DI+ D R++
Sbjct: 442 RK--KIEKLARDILIDPIRVV 460
Score = 261 (96.9 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 71/242 (29%), Positives = 114/242 (47%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQVII 276
+LQ+ +V R+ DM +R + V + +L F +I+K+ ++I
Sbjct: 397 NLQRVTYLVFDEADRMFDM--GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILI 454
Query: 277 G-----SPDL-KANHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI 329
D+ +AN + Q V+I S K+N L + L + +L+F+ K +++
Sbjct: 455 DPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEEL 514
Query: 330 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD 389
L+ + +HGD Q+ER+ V+SEFK PI+ ATDVAARGLD+ +K VINYD
Sbjct: 515 ANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYD 574
Query: 390 FPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMGRG 449
++ + H T ++ FA +L+ LE A Q VS EL +
Sbjct: 575 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
Query: 450 AP 451
P
Sbjct: 635 NP 636
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 477 (173.0 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
Identities = 94/236 (39%), Positives = 148/236 (62%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILSQVI- 275
+L++ +V+ R++DM +R++ + D M + +++++ +
Sbjct: 159 NLRRTTYLVLDEADRMLDM--GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 216
Query: 276 ------IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCD 327
IG+ +L ANH I Q VD+ + +K KL++L+E+IM ++ ++F++TK+ CD
Sbjct: 217 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 276
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
++TR++R DGWPA+ IHGDKSQ ERDWVL+EFK GK+PI+ ATDVA+RGLDV+DVK+VIN
Sbjct: 277 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 336
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
YD+P S EDY+H FFT N + +LI++L EA Q ++P+L
Sbjct: 337 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 392
Score = 408 (148.7 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
Identities = 77/105 (73%), Positives = 90/105 (85%)
Query: 170 GDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIAT 229
GDGPI LVLAPTRELA Q+QQ + ++ + ++KSTCIYGG PKGPQ+RDL++GVEI IAT
Sbjct: 86 GDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIAT 145
Query: 230 PGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
PGRLID LE TNLRR TYLVLDEADRMLDMGFEPQI+KI+ Q+
Sbjct: 146 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 190
Score = 75 (31.5 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVP 95
+K +LD L FEKNFY E P +A + ITV G D P
Sbjct: 44 KKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRG-DGP 89
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 543 (196.2 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 106/221 (47%), Positives = 147/221 (66%)
Query: 58 PFEKNFYVESPSVAAMS-XXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISK 116
PF KNFYVE P +A MS I+V+G+ PKP+K++ G V+ + K
Sbjct: 315 PFRKNFYVEVPELARMSPEEVSEYRLELEGISVKGKGCPKPIKTWVQCGISMKVLNALKK 374
Query: 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176
+ +PTPIQAQ P + GRDLIGIA+TGSGKT+A+LLP H+ Q + +GP+ +
Sbjct: 375 HNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAV 434
Query: 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM 236
++ PTRELA+QI +E KF S ++ C+YGG Q+ +L++G EI++ TPGR+IDM
Sbjct: 435 IMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 494
Query: 237 LESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L ++N TNLRRVTY+V+DEADRM DMGFEPQ+ +I+ V
Sbjct: 495 LGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNV 535
Score = 288 (106.4 bits), Expect = 4.3e-24, P = 4.3e-24
Identities = 73/242 (30%), Positives = 121/242 (50%)
Query: 209 GVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF----E 264
G G +V +L++ +VI R+ DM +R V + D M F E
Sbjct: 496 GANNG-RVTNLRRVTYVVIDEADRMFDMGFEPQV-MRIVDNVRPDRQTVMFSATFPRTME 553
Query: 265 PQIKKILS---QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMD 321
++ILS +V +G + + + QHV ++ E +K+ KL+++L + ++IF+D
Sbjct: 554 ALARRILSKPVEVQVGGRSVVCSD-VEQHVIVIEEEKKFLKLLEILGHYQEKGSVIIFVD 612
Query: 322 TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 381
++ D + + L +P +S+HG Q +RD ++++FK G ++ AT VAARGLDVK
Sbjct: 613 KQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQ 672
Query: 382 VKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSP 441
+ V+NY P EDYVH F T AR++ +++ LE +G V
Sbjct: 673 LILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELSGSSVPA 732
Query: 442 EL 443
EL
Sbjct: 733 EL 734
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 539 (194.8 bits), Expect = 3.6e-51, P = 3.6e-51
Identities = 116/261 (44%), Positives = 159/261 (60%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKA 117
PFEKNFY E + ++ + V G P+P SF GF + +M +I K+
Sbjct: 212 PFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKS 271
Query: 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177
+ +PTPIQ QG P+AL GRD+IGIA+TGSGKT A++ P ++H+ Q L PGDGPI ++
Sbjct: 272 EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVI 331
Query: 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML 237
+ PTREL QI E +FG + ++S +YGG Q + LQ+G EIV+ TPGRLID +
Sbjct: 332 VCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 238 ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSES 297
+ TNL+RV+YLV DEADRM DMGFE Q++ I S V PD RQ + +
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV---RPD-------RQTLLFSATF 441
Query: 298 QKYNKLVKLLEDIM-DGSRIL 317
+K K+ KL DI+ D R++
Sbjct: 442 RK--KIEKLARDILIDPIRVV 460
Score = 264 (98.0 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 69/234 (29%), Positives = 114/234 (48%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQVII 276
+LQ+ +V R+ DM +R + V + +L F +I+K+ ++I
Sbjct: 397 NLQRVSYLVFDEADRMFDM--GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILI 454
Query: 277 G-----SPDL-KANHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI 329
D+ +AN + Q V+I+ S K+N L + L + +L+F+ K +++
Sbjct: 455 DPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEEL 514
Query: 330 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD 389
L+ +G +HGD Q+ER+ V+S+FK P++ ATDVAARGLD+ +K VINYD
Sbjct: 515 ANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYD 574
Query: 390 FPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
++ + H T ++ FA +L+ LE A Q VS EL
Sbjct: 575 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKEL 628
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 127/288 (44%), Positives = 178/288 (61%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITV-------EGRDVPKPVKSF 101
RK DL P KNFYVE+ + ++MS + E R +P P+ F
Sbjct: 160 RKWDLP---PIHKNFYVETKATSSMSQVQVDIWRKENFNVMCNDLKDGEKRPIPNPICKF 216
Query: 102 RDV-G-FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
D G +P+ +M+ I KAGF +PTPIQ+Q WP+ L+G DLIGIA+TG+GKTL+YL+P +
Sbjct: 217 EDAFGPYPE-LMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFI 275
Query: 160 HVNAQPFLAPG--DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217
H+N+QP ++ G +GP +LVL PTRELA+Q+ E +K+ +KS CIYGG + Q++
Sbjct: 276 HLNSQP-VSRGKRNGPGMLVLTPTRELALQVGAECSKYSYKG-LKSVCIYGGGNRKGQIQ 333
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIG 277
D+ KGV+I+IATPGRL D+ ++ NLR +TYLVLDEAD+MLD+GFE QI KIL V
Sbjct: 334 DIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV--- 390
Query: 278 SPDLKANHAIRQHVDIVSE-SQKYNKLVKLLEDIMDGSRILIFMDTKK 324
PD + D + + + Y K L + G+ L+ +DT K
Sbjct: 391 RPDRQTIMTSATWPDTIRQLAHSYLKEPML---VYVGTLDLVAVDTVK 435
Score = 300 (110.7 bits), Expect = 7.7e-26, P = 7.7e-26
Identities = 59/173 (34%), Positives = 99/173 (57%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V +G+ DL A ++Q++ I +E +K + + L+ + ++++F+ K D ++ L
Sbjct: 421 VYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDL 480
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ G P S+HGD+ Q++R+ L +FK GK I+ ATD+A+RGLDV DV +V NY+FP +
Sbjct: 481 SIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRN 540
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
+E+YVH T + + A ELI IL+ A Q + +L +M
Sbjct: 541 IEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQRANQSIPEDLLSM 593
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 538 (194.4 bits), Expect = 4.3e-51, P = 4.3e-51
Identities = 116/261 (44%), Positives = 159/261 (60%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKA 117
PFEKNFY E + ++ + V G P+P SF GF + +M +I K+
Sbjct: 212 PFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKS 271
Query: 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177
+ +PTPIQ QG P+AL GRD+IGIA+TGSGKT A++ P ++H+ Q L PGDGPI ++
Sbjct: 272 EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVI 331
Query: 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML 237
+ PTREL QI E +FG + ++S +YGG Q + LQ+G EIV+ TPGRLID +
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 238 ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSES 297
+ TNL+RV+YLV DEADRM DMGFE Q++ I S V PD RQ + +
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV---RPD-------RQTLLFSATF 441
Query: 298 QKYNKLVKLLEDIM-DGSRIL 317
+K K+ KL DI+ D R++
Sbjct: 442 RK--KIEKLARDILIDPIRVV 460
Score = 263 (97.6 bits), Expect = 6.0e-20, P = 6.0e-20
Identities = 69/234 (29%), Positives = 114/234 (48%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQVII 276
+LQ+ +V R+ DM +R + V + +L F +I+K+ ++I
Sbjct: 397 NLQRVSYLVFDEADRMFDM--GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILI 454
Query: 277 G-----SPDL-KANHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI 329
D+ +AN + Q V+I+ S K+N L + L + +L+F+ K +++
Sbjct: 455 DPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEEL 514
Query: 330 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD 389
L+ +G +HGD Q+ER+ V+S+FK P++ ATDVAARGLD+ +K VINYD
Sbjct: 515 ASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYD 574
Query: 390 FPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
++ + H T ++ FA +L+ LE A Q VS EL
Sbjct: 575 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKEL 628
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 538 (194.4 bits), Expect = 4.3e-51, P = 4.3e-51
Identities = 116/261 (44%), Positives = 159/261 (60%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKA 117
PFEKNFY E + ++ + V G P+P SF GF + +M +I K+
Sbjct: 212 PFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKS 271
Query: 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177
+ +PTPIQ QG P+AL GRD+IGIA+TGSGKT A++ P ++H+ Q L PGDGPI ++
Sbjct: 272 EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVI 331
Query: 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML 237
+ PTREL QI E +FG + ++S +YGG Q + LQ+G EIV+ TPGRLID +
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 238 ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSES 297
+ TNL+RV+YLV DEADRM DMGFE Q++ I S V PD RQ + +
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV---RPD-------RQTLLFSATF 441
Query: 298 QKYNKLVKLLEDIM-DGSRIL 317
+K K+ KL DI+ D R++
Sbjct: 442 RK--KIEKLARDILIDPIRVV 460
Score = 258 (95.9 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 68/234 (29%), Positives = 113/234 (48%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQVII 276
+LQ+ +V R+ DM +R + V + +L F +I+K+ ++I
Sbjct: 397 NLQRVSYLVFDEADRMFDM--GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILI 454
Query: 277 G-----SPDL-KANHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI 329
D+ +AN + Q V+I+ S K+N L + L + +L+F+ K +++
Sbjct: 455 DPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEEL 514
Query: 330 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD 389
L+ +G +HGD Q+ER+ V+ +FK P++ ATDVAARGLD+ +K VINYD
Sbjct: 515 ANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLVATDVAARGLDIPSIKTVINYD 574
Query: 390 FPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
++ + H T ++ FA +L+ LE A Q VS EL
Sbjct: 575 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKEL 628
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 538 (194.4 bits), Expect = 4.4e-51, P = 4.4e-51
Identities = 116/261 (44%), Positives = 159/261 (60%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKA 117
PFEKNFY E + ++ + V G P+P SF GF + +M +I K+
Sbjct: 212 PFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKS 271
Query: 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177
+ +PTPIQ QG P+AL GRD+IGIA+TGSGKT A++ P ++H+ Q L PGDGPI ++
Sbjct: 272 EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVI 331
Query: 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML 237
+ PTREL QI E +FG + ++S +YGG Q + LQ+G EIV+ TPGRLID +
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 238 ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSES 297
+ TNL+RV+YLV DEADRM DMGFE Q++ I S V PD RQ + +
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV---RPD-------RQTLLFSATF 441
Query: 298 QKYNKLVKLLEDIM-DGSRIL 317
+K K+ KL DI+ D R++
Sbjct: 442 RK--KIEKLARDILIDPIRVV 460
Score = 264 (98.0 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 69/234 (29%), Positives = 114/234 (48%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQVII 276
+LQ+ +V R+ DM +R + V + +L F +I+K+ ++I
Sbjct: 397 NLQRVSYLVFDEADRMFDM--GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILI 454
Query: 277 G-----SPDL-KANHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI 329
D+ +AN + Q V+I+ S K+N L + L + +L+F+ K +++
Sbjct: 455 DPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEEL 514
Query: 330 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD 389
L+ +G +HGD Q+ER+ V+S+FK P++ ATDVAARGLD+ +K VINYD
Sbjct: 515 ANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYD 574
Query: 390 FPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
++ + H T ++ FA +L+ LE A Q VS EL
Sbjct: 575 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKEL 628
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 538 (194.4 bits), Expect = 4.5e-51, P = 4.5e-51
Identities = 116/261 (44%), Positives = 159/261 (60%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKA 117
PFEKNFY E + ++ + V G P+P SF GF + +M +I K+
Sbjct: 212 PFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKS 271
Query: 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177
+ +PTPIQ QG P+AL GRD+IGIA+TGSGKT A++ P ++H+ Q L PGDGPI ++
Sbjct: 272 EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVI 331
Query: 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML 237
+ PTREL QI E +FG + ++S +YGG Q + LQ+G EIV+ TPGRLID +
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 238 ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSES 297
+ TNL+RV+YLV DEADRM DMGFE Q++ I S V PD RQ + +
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV---RPD-------RQTLLFSATF 441
Query: 298 QKYNKLVKLLEDIM-DGSRIL 317
+K K+ KL DI+ D R++
Sbjct: 442 RK--KIEKLARDILIDPIRVV 460
Score = 264 (98.0 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 69/234 (29%), Positives = 114/234 (48%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQVII 276
+LQ+ +V R+ DM +R + V + +L F +I+K+ ++I
Sbjct: 397 NLQRVSYLVFDEADRMFDM--GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILI 454
Query: 277 G-----SPDL-KANHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI 329
D+ +AN + Q V+I+ S K+N L + L + +L+F+ K +++
Sbjct: 455 DPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEEL 514
Query: 330 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD 389
L+ +G +HGD Q+ER+ V+S+FK P++ ATDVAARGLD+ +K VINYD
Sbjct: 515 ANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYD 574
Query: 390 FPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
++ + H T ++ FA +L+ LE A Q VS EL
Sbjct: 575 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKEL 628
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 538 (194.4 bits), Expect = 4.7e-51, P = 4.7e-51
Identities = 116/261 (44%), Positives = 159/261 (60%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKA 117
PFEKNFY E + ++ + V G P+P SF GF + +M +I K+
Sbjct: 212 PFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKS 271
Query: 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177
+ +PTPIQ QG P+AL GRD+IGIA+TGSGKT A++ P ++H+ Q L PGDGPI ++
Sbjct: 272 EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVI 331
Query: 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML 237
+ PTREL QI E +FG + ++S +YGG Q + LQ+G EIV+ TPGRLID +
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 238 ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSES 297
+ TNL+RV+YLV DEADRM DMGFE Q++ I S V PD RQ + +
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV---RPD-------RQTLLFSATF 441
Query: 298 QKYNKLVKLLEDIM-DGSRIL 317
+K K+ KL DI+ D R++
Sbjct: 442 RK--KIEKLARDILIDPIRVV 460
Score = 271 (100.5 bits), Expect = 5.9e-21, P = 5.9e-21
Identities = 68/233 (29%), Positives = 113/233 (48%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQVII 276
+LQ+ +V R+ DM +R + V + +L F +I+K+ ++I
Sbjct: 397 NLQRVSYLVFDEADRMFDM--GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILI 454
Query: 277 G-----SPDL-KANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT 330
D+ +AN + Q V+I+ K+N L + L + +L+F+ K +++
Sbjct: 455 DPIRVVQGDIGEANEDVTQIVEILHSGSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELA 514
Query: 331 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 390
L+ +G +HGD Q+ER+ V+S+FK P++ ATDVAARGLD+ +K VINYD
Sbjct: 515 NNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDV 574
Query: 391 PGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
++ + H T ++ FA +L+ LE A Q VS EL
Sbjct: 575 ARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKEL 627
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 537 (194.1 bits), Expect = 5.0e-51, P = 5.0e-51
Identities = 116/262 (44%), Positives = 161/262 (61%)
Query: 57 TPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISK 116
+PFEKNFY E +++++ + V G PKP SF GF + +M +I K
Sbjct: 215 SPFEKNFYNEHEEISSLTGAEVVELRRKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRK 274
Query: 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176
+ + +PTPIQ QG P+AL GRD IGIA+TGSGKT A++ P +VH+ Q L PG+GPI +
Sbjct: 275 SEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQKELEPGEGPIAV 334
Query: 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM 236
++ PTREL QI E +FG + ++S +YGG Q + LQ+G EIV+ TPGRLID
Sbjct: 335 IVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDH 394
Query: 237 LESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSE 296
++ T+L+RVT+LV DEADRM DMGFE Q++ I S V PD RQ + +
Sbjct: 395 VKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHV---RPD-------RQTLLFSAT 444
Query: 297 SQKYNKLVKLLEDIM-DGSRIL 317
+K K+ KL DI+ D R++
Sbjct: 445 FRK--KIEKLARDILVDPIRVV 464
Score = 262 (97.3 bits), Expect = 7.6e-20, P = 7.6e-20
Identities = 65/241 (26%), Positives = 114/241 (47%)
Query: 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQVIIG 277
LQ+ +V R+ DM +R + V + +L F +I+K+ +++
Sbjct: 402 LQRVTFLVFDEADRMFDM--GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVD 459
Query: 278 -----SPDL-KANHAIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT 330
D+ +AN I Q V+++ Q K+ L + L + +L+F+ K C+++
Sbjct: 460 PIRVVQGDIGEANEDITQIVEVLQSGQDKWGWLTRRLVEFTSAGSVLVFVTKKANCEELA 519
Query: 331 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 390
L +G+ +HGD Q+ER+ V+++FK P++ ATDVAARGLD+ ++ V+NYD
Sbjct: 520 TNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDV 579
Query: 391 PGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMGRGA 450
++ + H T + FA +L+ LE A Q VS +L +
Sbjct: 580 ARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSFAGDLVRNLEGANQSVSKDLLDLAMQN 639
Query: 451 P 451
P
Sbjct: 640 P 640
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 124/281 (44%), Positives = 175/281 (62%)
Query: 56 LTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITV-------EGRDVPKPVKSFRDV-G-F 106
L P KNFYVE+ + ++MS + E R +P P+ F D G +
Sbjct: 173 LPPIHKNFYVETKATSSMSQVQVDIWRKENFNVMCNDLKDGEKRPIPNPICKFEDAFGPY 232
Query: 107 PDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF 166
P+ +M+ I KAGF +PTPIQ+Q WP+ L+G DLIGIA+TG+GKTL+YL+P +H+N+QP
Sbjct: 233 PE-LMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQP- 290
Query: 167 LAPG--DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVE 224
++ G +GP +LVL PTRELA+Q+ E +K+ +KS CIYGG + Q++D+ KGV+
Sbjct: 291 VSRGKRNGPGMLVLTPTRELALQVGAECSKYSYKG-LKSVCIYGGGNRKGQIQDIMKGVD 349
Query: 225 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKAN 284
I+IATPGRL D+ ++ NLR +TYLVLDEAD+MLD+GFE QI KIL V PD +
Sbjct: 350 IIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV---RPDRQTI 406
Query: 285 HAIRQHVDIVSE-SQKYNKLVKLLEDIMDGSRILIFMDTKK 324
D + + + Y K L + G+ L+ +DT K
Sbjct: 407 MTSATWPDTIRQLAHSYLKEPML---VYVGTLDLVAVDTVK 444
Score = 300 (110.7 bits), Expect = 8.0e-26, P = 8.0e-26
Identities = 59/173 (34%), Positives = 99/173 (57%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V +G+ DL A ++Q++ I +E +K + + L+ + ++++F+ K D ++ L
Sbjct: 430 VYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDL 489
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ G P S+HGD+ Q++R+ L +FK GK I+ ATD+A+RGLDV DV +V NY+FP +
Sbjct: 490 SIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRN 549
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
+E+YVH T + + A ELI IL+ A Q + +L +M
Sbjct: 550 IEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQRANQSIPEDLLSM 602
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 535 (193.4 bits), Expect = 1.9e-50, P = 1.9e-50
Identities = 106/219 (48%), Positives = 145/219 (66%)
Query: 59 FEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKAG 118
F+KNFY+E P +A M+ + + G+D PKP++S+ G + V + K
Sbjct: 469 FQKNFYIEVPVLANMTETEVLDFRSELGVKITGKDCPKPIQSWAQAGLTEKVHLLLKKFQ 528
Query: 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178
+ +PT IQAQ P + GRDLIGIA TGSGKTLA+LLP H+ AQP APG+G I L++
Sbjct: 529 YEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIM 588
Query: 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE 238
+PTRELA+QI E KF +++ C+YGG Q+ +L++G +IV+ TPGR+ID+L
Sbjct: 589 SPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILC 648
Query: 239 SHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
++N TNLRRVT+LVLDEADRM DMGF PQI I+ +
Sbjct: 649 ANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSI 687
Score = 292 (107.8 bits), Expect = 1.9e-24, P = 1.9e-24
Identities = 74/236 (31%), Positives = 119/236 (50%)
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQI----KKI 270
++ +L++ +V+ R+ DM N V + D M F P++ KKI
Sbjct: 653 RITNLRRVTFLVLDEADRMFDMGFGPQINCI-VDSIRPDRQTIMFSATFPPKVENVAKKI 711
Query: 271 LS---QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 327
L+ ++I G + ++ I Q V++ ++ +L++LL +ILIF + ++ D
Sbjct: 712 LNKPLEIIAGGRSIVSSD-IEQFVEVRPTETRFRRLIELLSIWYHKGQILIFTNRQETTD 770
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+ RQL + LS+HG K Q +RD +S+FK I+ AT +A+RGLD+KD+ V+N
Sbjct: 771 NLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVN 830
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
+D P LEDYVH F T RF+ +I LE++G KV EL
Sbjct: 831 FDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKALEQSGSKVPDEL 886
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 362 (132.5 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 83/177 (46%), Positives = 112/177 (63%)
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
K+F+D+G D + + + G+ +PT IQ + P+AL+GRD+IG+AETGSGKT A+ LP +
Sbjct: 50 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 109
Query: 159 VHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
NA L LVL PTRELA QI ++ G+S ++S I GG+ Q
Sbjct: 110 ---NA--LLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 164
Query: 219 LQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L K IVIATPGRLID LE+ NLR + YLV+DEADR+L+M FE ++ KIL +
Sbjct: 165 LAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 221
Score = 179 (68.1 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 40/113 (35%), Positives = 64/113 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q+ + K LV +L ++ G+ +IF T + LR G+ A+ +HG
Sbjct: 264 LQQYYLFIPSKFKDTYLVYILNELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQ 322
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
SQ++R L++FKA I+ ATDVA+RGLD+ V V+N+D P +DY+H
Sbjct: 323 MSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 375
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 361 (132.1 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 82/177 (46%), Positives = 112/177 (63%)
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
K+F+D+G D + + + G+ +PT IQ + P+AL+GRD+IG+AETGSGKT A+ LP +
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 159 VHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
NA L LVL PTRELA QI ++ G+S ++S I GG+ Q
Sbjct: 84 ---NA--LLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 138
Query: 219 LQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L K I+IATPGRLID LE+ NLR + YLV+DEADR+L+M FE ++ KIL +
Sbjct: 139 LAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 195
Score = 180 (68.4 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 40/113 (35%), Positives = 64/113 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q+ + K LV +L ++ G+ +IF T + LR G+ A+ +HG
Sbjct: 238 LQQYYIFIPSKFKDTYLVYILNELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQ 296
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
SQ++R L++FKA I+ ATDVA+RGLD+ V V+N+D P +DY+H
Sbjct: 297 MSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 349
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 358 (131.1 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 82/189 (43%), Positives = 115/189 (60%)
Query: 89 VEGRDVP--KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+E +VP + +SF+D+G D + + + G+ PT IQ + P+AL+GRD+IG+AETG
Sbjct: 13 LEAEEVPVVEEARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETG 72
Query: 147 SGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCI 206
SGKT A+ LP + Q L LVL PTRELA QI ++ G+S + S I
Sbjct: 73 SGKTGAFALPIL-----QALLDAPQRLFALVLTPTRELAFQISEQFEALGSSIGVHSAVI 127
Query: 207 YGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEP 265
GG+ Q L K I+IATPGRL+D LE+ NLR + +LV+DEADR+L+M FE
Sbjct: 128 VGGIDSMSQSLALAKKPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFET 187
Query: 266 QIKKILSQV 274
++ KIL +
Sbjct: 188 EVDKILKVI 196
Score = 179 (68.1 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 41/113 (36%), Positives = 64/113 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q+ + K + LV +L ++ G+ +IF T + LR G+ A+ +HG
Sbjct: 239 LQQYYIFIPSKFKDSYLVYILNELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQ 297
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
SQ +R L++FKA I+ ATDVA+RGLD+ V VIN+D P +DY+H
Sbjct: 298 MSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIH 350
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 337 (123.7 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 69/200 (34%), Positives = 115/200 (57%)
Query: 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157
+ F+ + ++ ++ G+ +PTPIQ + P + G DL+GIA+TG+GKT A+ LP
Sbjct: 1 MSEFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPI 60
Query: 158 IVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217
I L+L PTRELA QI Q + +K+ +YGGV + QV
Sbjct: 61 INKFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVD 120
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIG 277
++ G++I++ATPGRL+D++E+ + N + + VLDEAD MLDMGF ++ I+S++
Sbjct: 121 SIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKS 180
Query: 278 SPDLKANHAIRQHVDIVSES 297
L + + ++I++E+
Sbjct: 181 RQTLLFSATMPAEIEILAEA 200
Score = 200 (75.5 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 52/138 (37%), Positives = 76/138 (55%)
Query: 269 KILSQVIIGSPDLKANHAIRQHVDIVSES----QKYNKLVKLLEDIM---DGSRILIFMD 321
+IL++ I+ P A +D+V++S K NK V LL +I+ D ++LIF
Sbjct: 195 EILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNK-VPLLFNILTKADYEKVLIFCK 253
Query: 322 TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 381
TK G D I + L A S+H K+QA R+ L FK ++ ATDVAARG+DV +
Sbjct: 254 TKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVAARGIDVDN 313
Query: 382 VKYVINYDFPGSLEDYVH 399
+ VINY+ P +Y+H
Sbjct: 314 ITLVINYNLPEDPRNYIH 331
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 344 (126.2 bits), Expect = 6.3e-50, Sum P(2) = 6.3e-50
Identities = 75/185 (40%), Positives = 116/185 (62%)
Query: 90 EGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGK 149
E + + +SF ++ ++Q + +PTPIQ++ P AL+G D+IG+A+TGSGK
Sbjct: 72 ENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGK 131
Query: 150 TLAYLLPAIVHV--NAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIY 207
T A+ +P + + + +P+ A +LAPTRELA QI++ G+ ++STCI
Sbjct: 132 TAAFAIPILNRLWHDQEPYYA-------CILAPTRELAQQIKETFDSLGSLMGVRSTCIV 184
Query: 208 GGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEPQ 266
GG+ Q RDL + I+IATPGRL+D LE+ +LR++ +LV+DEADR+LDM F P
Sbjct: 185 GGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPV 244
Query: 267 IKKIL 271
+ +IL
Sbjct: 245 LDRIL 249
Score = 193 (73.0 bits), Expect = 6.3e-50, Sum P(2) = 6.3e-50
Identities = 50/155 (32%), Positives = 78/155 (50%)
Query: 289 QHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 348
Q + +V K L+ LL + + G ++IF TK ++++ + + A ++HGD +
Sbjct: 298 QTLMVVPGGLKNTYLIYLLNEFI-GKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLN 356
Query: 349 QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXX 408
Q +R L FKAGK I+ ATDVAARGLD+ V V+NYD P + Y+H
Sbjct: 357 QNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAG 416
Query: 409 XXXXXXXFFTAANARFAKELITILEEA-GQKVSPE 442
+ ++ ELI +EE G+K+ E
Sbjct: 417 RSGKSISLVS----QYDLELILRIEEVLGKKLPKE 447
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 324 (119.1 bits), Expect = 6.7e-50, Sum P(2) = 6.7e-50
Identities = 71/181 (39%), Positives = 107/181 (59%)
Query: 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 154
P+ V +F +G P+ ++ + GF T IQA P L G+D++G A+TG+GKT A+
Sbjct: 12 PEAV-AFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFG 70
Query: 155 LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK-IKSTCIYGGVPKG 213
LPA+ ++ P ++VLAPTRELA+Q+ + FG K ++ +YGG G
Sbjct: 71 LPALAKIDTSI-----KKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYG 125
Query: 214 PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273
PQ + L++G ++V+ TPGRL+D L + L + VLDEAD ML+MGF I+ IL
Sbjct: 126 PQFQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDH 185
Query: 274 V 274
+
Sbjct: 186 I 186
Score = 226 (84.6 bits), Expect = 6.7e-50, Sum P(2) = 6.7e-50
Identities = 49/140 (35%), Positives = 82/140 (58%)
Query: 265 PQIKKILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL--LE---DIMDGSRILIF 319
P I+KI ++ + +K + +I + K + + K+ LE ++++ ++IF
Sbjct: 201 PAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEYDAMIIF 260
Query: 320 MDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 379
+ T+ I +L G+PAL+++GD +QA+R+ + + K+GKS I+ ATDV ARGLD+
Sbjct: 261 VRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVARGLDI 320
Query: 380 KDVKYVINYDFPGSLEDYVH 399
+ VINYD PG E YVH
Sbjct: 321 PRISLVINYDLPGDNEAYVH 340
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 519 (187.8 bits), Expect = 6.9e-50, Sum P(2) = 6.9e-50
Identities = 99/220 (45%), Positives = 140/220 (63%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKA 117
PF KNFY+E ++ M+ + V G+DVP+P+K + G ++ + K
Sbjct: 488 PFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKL 547
Query: 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177
+ +P PIQ Q P+ + GRD IG+A+TGSGKTL ++LP + H+ QP + GDGPI LV
Sbjct: 548 NYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLV 607
Query: 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML 237
+APTREL QI + KF I+ +YGG Q+ +L++G EIV+ TPGR+ID+L
Sbjct: 608 MAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 667
Query: 238 ESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
+ + TNLRRVT+LV+DEADRM DMGFEPQI +I+ +
Sbjct: 668 CTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNI 707
Score = 293 (108.2 bits), Expect = 9.7e-26, Sum P(2) = 9.7e-26
Identities = 68/242 (28%), Positives = 128/242 (52%)
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
++ +L++ +V+ R+ DM + R+ + E +L P+ + L++
Sbjct: 673 KITNLRRVTFLVMDEADRMFDM--GFEPQITRIIQNIRPERQTVLFSATFPRQVETLARK 730
Query: 275 IIGSP-DLKA------NHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 327
++ P +++ N I Q V++ ES ++ +L++LL + + +IL+F+ +++ CD
Sbjct: 731 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEKGKILVFVQSQEKCD 790
Query: 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387
+ R + +P LS+HG K Q +R+ +S+FK ++ AT VAARGLDVK+++ V+N
Sbjct: 791 ALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVN 850
Query: 388 YDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMG 447
+D P EDYVH F + +A++A +L+ LE + Q V +L A+
Sbjct: 851 FDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLKALA 910
Query: 448 RG 449
G
Sbjct: 911 DG 912
Score = 39 (18.8 bits), Expect = 6.9e-50, Sum P(2) = 6.9e-50
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 39 KRDYDGAESPRKLDLDGLTP 58
KR + AES K D DG P
Sbjct: 293 KRKKEEAESESKGDADGNEP 312
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 357 (130.7 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
Identities = 82/177 (46%), Positives = 111/177 (62%)
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
K+F+D+G D + + + G+ +PT IQ + P+AL+GRD+IG+AETGSGKT A+ LP +
Sbjct: 26 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 85
Query: 159 VHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
NA L LVL PTRELA QI ++ G+S ++ I GG+ Q
Sbjct: 86 ---NA--LLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLA 140
Query: 219 LQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L K IVIATPGRLID LE+ NLR + YLV+DEADR+L+M FE ++ KIL +
Sbjct: 141 LAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 197
Score = 179 (68.1 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
Identities = 40/113 (35%), Positives = 64/113 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q+ + K LV +L ++ G+ +IF T + LR G+ A+ +HG
Sbjct: 240 LQQYYLFIPSKFKDTYLVYILNELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQ 298
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
SQ++R L++FKA I+ ATDVA+RGLD+ V V+N+D P +DY+H
Sbjct: 299 MSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 351
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 357 (130.7 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
Identities = 82/177 (46%), Positives = 111/177 (62%)
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
K+F+D+G D + + + G+ +PT IQ + P+AL+GRD+IG+AETGSGKT A+ LP +
Sbjct: 23 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 82
Query: 159 VHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
NA L LVL PTRELA QI ++ G+S ++ I GG+ Q
Sbjct: 83 ---NA--LLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLA 137
Query: 219 LQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L K IVIATPGRLID LE+ NLR + YLV+DEADR+L+M FE ++ KIL +
Sbjct: 138 LAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 194
Score = 179 (68.1 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
Identities = 40/113 (35%), Positives = 64/113 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q+ + K LV +L ++ G+ +IF T + LR G+ A+ +HG
Sbjct: 237 LQQYYLFIPSKFKDTYLVYILNELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQ 295
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
SQ++R L++FKA I+ ATDVA+RGLD+ V V+N+D P +DY+H
Sbjct: 296 MSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 348
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 357 (130.7 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
Identities = 82/177 (46%), Positives = 111/177 (62%)
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
K+F+D+G D + + + G+ +PT IQ + P+AL+GRD+IG+AETGSGKT A+ LP +
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 159 VHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
NA L LVL PTRELA QI ++ G+S ++ I GG+ Q
Sbjct: 84 ---NA--LLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLA 138
Query: 219 LQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L K IVIATPGRLID LE+ NLR + YLV+DEADR+L+M FE ++ KIL +
Sbjct: 139 LAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 195
Score = 179 (68.1 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
Identities = 40/113 (35%), Positives = 64/113 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q+ + K LV +L ++ G+ +IF T + LR G+ A+ +HG
Sbjct: 238 LQQYYLFIPSKFKDTYLVYILNELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQ 296
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
SQ++R L++FKA I+ ATDVA+RGLD+ V V+N+D P +DY+H
Sbjct: 297 MSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 349
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 357 (130.7 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
Identities = 82/177 (46%), Positives = 111/177 (62%)
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
K+F+D+G D + + + G+ +PT IQ + P+AL+GRD+IG+AETGSGKT A+ LP +
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 159 VHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
NA L LVL PTRELA QI ++ G+S ++ I GG+ Q
Sbjct: 84 ---NA--LLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLA 138
Query: 219 LQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L K IVIATPGRLID LE+ NLR + YLV+DEADR+L+M FE ++ KIL +
Sbjct: 139 LAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 195
Score = 179 (68.1 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
Identities = 40/113 (35%), Positives = 64/113 (56%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q+ + K LV +L ++ G+ +IF T + LR G+ A+ +HG
Sbjct: 238 LQQYYLFIPSKFKDTYLVYILNELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQ 296
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
SQ++R L++FKA I+ ATDVA+RGLD+ V V+N+D P +DY+H
Sbjct: 297 MSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 349
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 321 (118.1 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 72/171 (42%), Positives = 99/171 (57%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F D G V+ + K GF TPIQA P+ L G+D+ G A+TG+GKTLA+L H
Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
Query: 161 VNAQPFLAPGDG---PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217
+ P A G P +++APTRELA+QI ++ AS+ +K+ YGG Q+
Sbjct: 71 LLTTP-AAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIK 268
LQ GV+I+I T GR+ID + NL + +VLDEADRM D+GF I+
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR 180
Score = 211 (79.3 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 47/125 (37%), Positives = 66/125 (52%)
Query: 275 IIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR 334
++ P+ K H I++ + S K L L+E+ R +IF +TK C+QI L
Sbjct: 219 VVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWP-DRAIIFANTKHRCEQIWAHLA 277
Query: 335 MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSL 394
D + GD Q +R+ +L +F G I+ ATDVAARGL + V +V NYD P
Sbjct: 278 ADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDC 337
Query: 395 EDYVH 399
EDYVH
Sbjct: 338 EDYVH 342
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 321 (118.1 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 72/171 (42%), Positives = 99/171 (57%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F D G V+ + K GF TPIQA P+ L G+D+ G A+TG+GKTLA+L H
Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
Query: 161 VNAQPFLAPGDG---PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217
+ P A G P +++APTRELA+QI ++ AS+ +K+ YGG Q+
Sbjct: 71 LLTTP-AAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIK 268
LQ GV+I+I T GR+ID + NL + +VLDEADRM D+GF I+
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR 180
Score = 211 (79.3 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 47/125 (37%), Positives = 66/125 (52%)
Query: 275 IIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR 334
++ P+ K H I++ + S K L L+E+ R +IF +TK C+QI L
Sbjct: 219 VVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWP-DRAIIFANTKHRCEQIWAHLA 277
Query: 335 MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSL 394
D + GD Q +R+ +L +F G I+ ATDVAARGL + V +V NYD P
Sbjct: 278 ADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDC 337
Query: 395 EDYVH 399
EDYVH
Sbjct: 338 EDYVH 342
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 326 (119.8 bits), Expect = 4.8e-49, Sum P(2) = 4.8e-49
Identities = 70/175 (40%), Positives = 107/175 (61%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
+F D+ V++ I G+ PT IQA P + G D++G+A+TG+GKT A+ +P +
Sbjct: 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73
Query: 160 HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRD 218
++ + P LVL PTRELA+Q+ + ++GA S++ IYGG Q+
Sbjct: 74 KIDITSKV-----PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128
Query: 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273
L++G ++V+ TPGR+ID LE +L RV +LVLDEAD ML MGF +++ILS+
Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSE 183
Score = 213 (80.0 bits), Expect = 4.8e-49, Sum P(2) = 4.8e-49
Identities = 49/140 (35%), Positives = 82/140 (58%)
Query: 265 PQIKKILSQVIIGSP---DLKANHAIRQHVD--IVSESQKYNKLVKLLEDIMDGSRILIF 319
P I+K LS + P KA A+ +++ + ++K + L ++LE + +++F
Sbjct: 199 PAIRK-LSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLE-VEPFEAMIVF 256
Query: 320 MDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 379
+ TK+ ++I +LR G+ A +I GD QA+R+ ++ + G I+ ATDVAARGLDV
Sbjct: 257 VRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDV 316
Query: 380 KDVKYVINYDFPGSLEDYVH 399
+ + +V+NYD P E YVH
Sbjct: 317 ERISHVLNYDIPHDTESYVH 336
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 98/175 (56%), Positives = 133/175 (76%)
Query: 105 GFPDYVM-----QEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
GF Y++ + + AGF P+PIQAQ WP+A++ RD++ IA+TGSGKTL YL+P +
Sbjct: 230 GFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFM 289
Query: 160 HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219
H+ + GP +LVL+PTRELA QIQ E+ KFG SSKI C+YGG PKGPQ++++
Sbjct: 290 HLQ-RIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEI 348
Query: 220 QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
++GV+IV+ATPGRL D+LE +L +V+YLVLDEADRMLDMGFEPQI+KI+++V
Sbjct: 349 ERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEV 403
Score = 406 (148.0 bits), Expect = 5.8e-42, Sum P(2) = 5.8e-42
Identities = 92/235 (39%), Positives = 142/235 (60%)
Query: 225 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP-QIKKILS-------QVII 276
+V+ R++DM +R++ V + ++ P +++KI + QV I
Sbjct: 379 LVLDEADRMLDM--GFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNI 436
Query: 277 GSPD-LKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM 335
G+ D L AN +I Q +++++ +K+++L ++L GS+I+IF TK+ CDQ+ R L
Sbjct: 437 GNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNLTR 496
Query: 336 DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLE 395
+ A +IHGDKSQAERD VL++F++G++P++ ATDVAARGLDVKD++ V+NYDFP +E
Sbjct: 497 T-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVE 555
Query: 396 DYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAMG-RG 449
DYVH FF +A+ A +LI ILE A QKV P++ M RG
Sbjct: 556 DYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATRG 610
Score = 68 (29.0 bits), Expect = 5.8e-42, Sum P(2) = 5.8e-42
Identities = 23/77 (29%), Positives = 33/77 (42%)
Query: 68 PSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQ- 126
PS AA + ITV G VP P+ SF G P+ +++E F P +
Sbjct: 130 PSSAAGNELSPEAYCRKHEITVSGGQVPPPLMSFEATGLPNELLRECPN---FMPYALSF 186
Query: 127 AQGWPMALKGRDLIGIA 143
G AL G +++ A
Sbjct: 187 VPGAIFALGGANVVRCA 203
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 358 (131.1 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 80/178 (44%), Positives = 109/178 (61%)
Query: 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 154
P P KSF+++G D + + G+ PTPIQ+Q P+AL+GRD+IG+AETGSGKT A+
Sbjct: 42 PAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFA 101
Query: 155 LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214
LP + + P G LVLAPTRELA QI Q G++ ++ I GG+
Sbjct: 102 LPMLQALMEAPQTLFG-----LVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVA 156
Query: 215 QVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271
Q L K I++ATPGRL+D LE+ +LR + YL +DEADR+LDM F + KI+
Sbjct: 157 QSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKII 214
Score = 167 (63.8 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 45/140 (32%), Positives = 65/140 (46%)
Query: 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 362
LV LL + G +IF T ++ LR G+ A+ +HG SQ+ R L +F++
Sbjct: 276 LVYLLNEFA-GQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSR 334
Query: 363 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANA 422
I+ ATDVAARGLD+ V V N+D P + Y+H F T
Sbjct: 335 SRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVT---- 390
Query: 423 RFAKELITILEEAGQKVSPE 442
++ E+ +E A K PE
Sbjct: 391 QYDVEVWLRIEHALSKKLPE 410
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 347 (127.2 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 78/176 (44%), Positives = 108/176 (61%)
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
K+F+++G D + + K GF PTPIQ + P+ L RD+IG+A+TGSGKT A+ LP I
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
Query: 159 VHV--NAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216
+ N PF A +VLAPTRELA QI ++ G S ++S I GG+ Q
Sbjct: 106 QELWNNPSPFFA-------VVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQA 158
Query: 217 RDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271
L K +++ TPGRL+D LE+ +L+ + YL++DEADR+LDM F P I KIL
Sbjct: 159 VALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKIL 214
Score = 178 (67.7 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 40/97 (41%), Positives = 58/97 (59%)
Query: 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 362
LV L+ ++ G+ I+IF T ++ LR G+ A+ +HG SQ+ R L++FK+G
Sbjct: 276 LVYLVNELA-GNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSG 334
Query: 363 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
+ ATDVAARGLD+ V VINYD P + Y+H
Sbjct: 335 ARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIH 371
>UNIPROTKB|J3QRQ7 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005516
"calmodulin binding" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0045069 "regulation of viral genome replication" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:2746
ChiTaRS:DDX5 Ensembl:ENST00000577922 Uniprot:J3QRQ7
Length = 212
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 96/169 (56%), Positives = 120/169 (71%)
Query: 49 RKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPD 108
+K +LD L FEKNFY E P +A + ITV G + PKPV +F + FP
Sbjct: 44 KKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPA 103
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
VM I++ F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 163
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217
GDGPI LVLAPTRELA Q+QQ + ++ + ++KSTCIYGG PKGPQ+R
Sbjct: 164 RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIR 212
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 345 (126.5 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 75/170 (44%), Positives = 105/170 (61%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F D G +M I GF EPT IQ Q P A+ G DLI ++TGSGKTLA+++PA+
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ 220
++ L+ D P V++L PTRELA Q+ + F A+++ K+ I GG QV+ LQ
Sbjct: 63 LSKNRALSKRD-PRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQ 121
Query: 221 KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKI 270
K E ++ATPGRL D L + +L + L+LDEADRMLD+GF ++ +I
Sbjct: 122 KEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQI 171
Score = 176 (67.0 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 38/140 (27%), Positives = 75/140 (53%)
Query: 266 QIKKILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK---LLEDIM---DGSRILIF 319
Q+ + ++++ + N +HVDI + L + LL+ + +I+IF
Sbjct: 193 QVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQHFLVTEKSQQIIIF 252
Query: 320 MDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 379
T+ D++ + L A+++ G+ +Q +R+ ++ F G+ I+ TD+A+RGLD+
Sbjct: 253 TATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDL 312
Query: 380 KDVKYVINYDFPGSLEDYVH 399
+V +VIN+D P E++VH
Sbjct: 313 INVSHVINFDMPKHTEEFVH 332
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 345 (126.5 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 75/170 (44%), Positives = 105/170 (61%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F D G +M I GF EPT IQ Q P A+ G DLI ++TGSGKTLA+++PA+
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ 220
++ L+ D P V++L PTRELA Q+ + F A+++ K+ I GG QV+ LQ
Sbjct: 63 LSKNRALSKRD-PRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQ 121
Query: 221 KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKI 270
K E ++ATPGRL D L + +L + L+LDEADRMLD+GF ++ +I
Sbjct: 122 KEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQI 171
Score = 176 (67.0 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 38/140 (27%), Positives = 75/140 (53%)
Query: 266 QIKKILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK---LLEDIM---DGSRILIF 319
Q+ + ++++ + N +HVDI + L + LL+ + +I+IF
Sbjct: 193 QVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQHFLVTEKSQQIIIF 252
Query: 320 MDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 379
T+ D++ + L A+++ G+ +Q +R+ ++ F G+ I+ TD+A+RGLD+
Sbjct: 253 TATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDL 312
Query: 380 KDVKYVINYDFPGSLEDYVH 399
+V +VIN+D P E++VH
Sbjct: 313 INVSHVINFDMPKHTEEFVH 332
>FB|FBgn0029880 [details] [associations]
symbol:CG14443 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:AE014298 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:NP_572330.2 ProteinModelPortal:Q9W3Y5 SMR:Q9W3Y5
IntAct:Q9W3Y5 MINT:MINT-1614529 PRIDE:Q9W3Y5 GeneID:31595
KEGG:dme:Dmel_CG14443 UCSC:CG14443-RA FlyBase:FBgn0029880
OrthoDB:EOG4DFN5J PhylomeDB:Q9W3Y5 GenomeRNAi:31595 NextBio:774378
Bgee:Q9W3Y5 GermOnline:CG14443 Uniprot:Q9W3Y5
Length = 438
Score = 321 (118.1 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 75/203 (36%), Positives = 120/203 (59%)
Query: 92 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 151
R++P+PV SF GF ++Q++ G+ PTPIQAQ W +A +G++++ I+ G+GKTL
Sbjct: 25 RNLPEPVLSFERSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTL 84
Query: 152 AYLLPAIVHV-NAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 210
YLLP I+ + N + + GPIVL+L RE AV +Q+E + ++++ C+ G
Sbjct: 85 GYLLPGIMKMHNQRGLMQHKKGPIVLILVDCREAAVMVQREVLYYTNPLELRTHCLLGNS 144
Query: 211 P-KGPQVRDLQKGVEIVIATPGRLIDMLES--HNTNLRRVTYLVLDEADRMLDMGFEPQI 267
+G DL ++A+ GRL+ M+++ H L R TYLVLD DRM+D+G E I
Sbjct: 145 QWQGHAECDL------LVASAGRLLQMIDNKKHVVELERCTYLVLDNIDRMIDVGLEGNI 198
Query: 268 KKIL------SQVIIGSPDLKAN 284
++L +Q+I+ S +N
Sbjct: 199 CRLLCRLRPHAQLIVSSTSWSSN 221
Score = 199 (75.1 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 48/163 (29%), Positives = 83/163 (50%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGS----RILIFMDTKKGCDQITRQLRMDGWPALS 342
IRQ V++V+ K +L+K L I D S +++I++ +K +++ +R + P
Sbjct: 251 IRQRVEVVNGLSKVERLMKELTAIYDTSDIPGKVVIYVKRQKVVEELVDLIR-NCVPCEG 309
Query: 343 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXX 402
IHG ++ E ++ +F G I+ AT + + LDV ++YVINYDFP +++ YV
Sbjct: 310 IHGGRTAQENQGIIHDFGTGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKYVQRMS 369
Query: 403 XXXXXXXXXX--XXXFFTAANARFAKELITILEEAGQKVSPEL 443
FFT AN + E++ L+ Q++ P L
Sbjct: 370 RTGCLSYNRNCEVISFFTMANYKLVTEVVDFLKICKQEIGPHL 412
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 315 (115.9 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 66/178 (37%), Positives = 107/178 (60%)
Query: 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157
V SF ++G + +++ G+ PTP+QA P L GRD++ A TGSGKT A+ LP
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 158 IVHVNAQPFLAPGDGPI-VLVLAPTRELAVQIQQESTKFGA--SSKIKSTCIYGGVPKGP 214
+ ++ G + LVL PTRELA Q+ + + + ++K +GGV
Sbjct: 68 LQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNL 127
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272
Q++ L+ G ++++ATPGRL+D+L S+ L +V+ VLDEADRML +GF +++++L+
Sbjct: 128 QMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLA 185
Score = 203 (76.5 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 48/131 (36%), Positives = 70/131 (53%)
Query: 269 KILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQ 328
K+L Q + + I Q V V+ QK L L++ S+ LIF+ K C+
Sbjct: 210 KLLHQPLEYHLQSEQESTIEQRVITVNREQKTALLAHLIKQ-HQWSQALIFVSAKNTCNH 268
Query: 329 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 388
+ ++L G A HGDK+Q R VL FK G+ ++ ATD+AARG+D+ + VIN+
Sbjct: 269 LAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINF 328
Query: 389 DFPGSLEDYVH 399
D P S DY+H
Sbjct: 329 DLPRSPADYMH 339
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 315 (115.9 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 66/178 (37%), Positives = 107/178 (60%)
Query: 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157
V SF ++G + +++ G+ PTP+QA P L GRD++ A TGSGKT A+ LP
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 158 IVHVNAQPFLAPGDGPI-VLVLAPTRELAVQIQQESTKFGA--SSKIKSTCIYGGVPKGP 214
+ ++ G + LVL PTRELA Q+ + + + ++K +GGV
Sbjct: 68 LQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNL 127
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272
Q++ L+ G ++++ATPGRL+D+L S+ L +V+ VLDEADRML +GF +++++L+
Sbjct: 128 QMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLA 185
Score = 203 (76.5 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 48/131 (36%), Positives = 70/131 (53%)
Query: 269 KILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQ 328
K+L Q + + I Q V V+ QK L L++ S+ LIF+ K C+
Sbjct: 210 KLLHQPLEYHLQSEQESTIEQRVITVNREQKTALLAHLIKQ-HQWSQALIFVSAKNTCNH 268
Query: 329 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 388
+ ++L G A HGDK+Q R VL FK G+ ++ ATD+AARG+D+ + VIN+
Sbjct: 269 LAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINF 328
Query: 389 DFPGSLEDYVH 399
D P S DY+H
Sbjct: 329 DLPRSPADYMH 339
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 347 (127.2 bits), Expect = 7.1e-48, Sum P(2) = 7.1e-48
Identities = 78/176 (44%), Positives = 111/176 (63%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
SF+++G + + + + G+ +PT IQ + P+AL+GRD+IG+AETGSGKT A+ +P +
Sbjct: 80 SFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVL- 138
Query: 160 HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219
Q LA LVL PTRELA QI ++ G+S +K+ I GG+ Q L
Sbjct: 139 ----QSLLACAQRLHTLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVL 194
Query: 220 QKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
K +VIATPGRLID +E+ NLR + YLV+DEADR+L+M FE ++ KIL +
Sbjct: 195 AKKPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVI 250
Score = 172 (65.6 bits), Expect = 7.1e-48, Sum P(2) = 7.1e-48
Identities = 38/113 (33%), Positives = 62/113 (54%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q + K LV +L ++ G+ ++F T ++ LR G A+ +HG
Sbjct: 293 LQQFYIFIPSKYKDCYLVSILNELA-GNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQ 351
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
SQ +R L++FK+ ++ ATDVA+RGLD+ V VIN+D P +DY+H
Sbjct: 352 MSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIH 404
>DICTYBASE|DDB_G0292010 [details] [associations]
symbol:DDB_G0292010 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292010 GO:GO:0005524
EMBL:AAFI02000187 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
ProtClustDB:CLSZ2846571 RefSeq:XP_629765.1
ProteinModelPortal:Q54DV7 EnsemblProtists:DDB0184159 GeneID:8628441
KEGG:ddi:DDB_G0292010 InParanoid:Q54DV7 OMA:VESSCKP Uniprot:Q54DV7
Length = 777
Score = 237 (88.5 bits), Expect = 1.4e-47, Sum P(3) = 1.4e-47
Identities = 69/208 (33%), Positives = 104/208 (50%)
Query: 253 DEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM- 311
D A + L + ++K S GS + + + ++Q V ++E +K L + IM
Sbjct: 511 DAAKKWLTNPLKIRVKS--SSTNQGSTSIISKN-VKQVVKPIAEKEKSKYLTTFINSIMK 567
Query: 312 ------DGSRILIFMDTKKGC-------DQITRQLRMDGWPALSIHGDKSQAERDWVLSE 358
+ S ILIF++T K +++ Q R + +IHGD Q ERD V+
Sbjct: 568 KELLLRNRSLILIFVNTIKSVKPILTVIEKMCDQFRERKYKCGAIHGDMKQFERDSVIDN 627
Query: 359 FKAGKSPIMTATDVAARGLDVK-DVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFF 417
FK+GK I+ ATD+ RG+ + ++++VINYDFP SLE YVH F
Sbjct: 628 FKSGKISILVATDILGRGIHIGGNLRFVINYDFPSSLEQYVHRVGRTGRQGNKGHALTLF 687
Query: 418 TAA--NARFAKELITILEEAGQKVSPEL 443
T N A+ LI ILEE Q++SP+L
Sbjct: 688 TDTPQNTPMARGLIKILEECKQQISPDL 715
Score = 209 (78.6 bits), Expect = 1.4e-47, Sum P(3) = 1.4e-47
Identities = 48/108 (44%), Positives = 67/108 (62%)
Query: 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL--QKGVEIVIAT 229
GP+VL++ PTRELA Q++ + I S IYGGV Q +D+ Q+ EI+IAT
Sbjct: 386 GPMVLIIVPTRELAKQVESSCKPLRSKFNIHSIAIYGGVDANEQ-KDILGQEHNEIIIAT 444
Query: 230 PGRLIDMLESHNTN---LRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
PGRL+D+++ L V L+LDEADRML +GF Q++KI Q+
Sbjct: 445 PGRLVDLIQRSKEVVGLLGGVGMLILDEADRMLQLGFGDQLQKISEQI 492
Score = 164 (62.8 bits), Expect = 1.4e-47, Sum P(3) = 1.4e-47
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 46 ESPRKLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXXITV--EGRDVPKPVKSFRD 103
+ +++ L P +K ++ ++ ++ +G+++P+P+ +F D
Sbjct: 229 QEAKEIQFKELPPIKKRYWKDTMKQLTSEDHREMRIKIKANVSTSFDGQEIPRPIITFED 288
Query: 104 VGFPDYVMQEI----SK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
P + + I +K PTP+Q+Q WP L G+D++ IA+TGSGKTL YLLPAI
Sbjct: 289 QDLPLSMKKFIGFLTTKYPSITAPTPVQSQCWPGILSGQDILSIAQTGSGKTLGYLLPAI 348
Query: 159 VHV 161
++
Sbjct: 349 PNI 351
Score = 43 (20.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI 329
IR+ + E + K KLL++ G +LI + T++ Q+
Sbjct: 360 IRRQQMTMQEKLENKKKSKLLKNTNMGPMVLIIVPTRELAKQV 402
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 323 (118.8 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 72/182 (39%), Positives = 105/182 (57%)
Query: 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLL 155
+P KSF D P + + + +AG+ TPIQ P+ G+D++ A+TGSGKT A+LL
Sbjct: 295 QPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLL 354
Query: 156 PAIVHVNAQPFLAPG-DG---PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP 211
P + + + L G +G P ++L PTRELA QI E KF S ++ +YGG+
Sbjct: 355 PIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGIN 414
Query: 212 KGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKI 270
G + KG I++ T GR+ E L + YLVLDEADRM+D MGF P+I++I
Sbjct: 415 VGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQI 474
Query: 271 LS 272
++
Sbjct: 475 IN 476
Score = 209 (78.6 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 54/183 (29%), Positives = 88/183 (48%)
Query: 283 ANHAIRQHVDIVSESQKYNKLVKLLEDIMDG-----------SRILIFMDTKKGCDQITR 331
AN + Q ++ + K +KL+KLL +D + ++F+ +K D +
Sbjct: 522 ANKCVIQEFELCDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLAS 581
Query: 332 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 391
+ PA++IHG + Q ER L F++G P++ AT V RGLD+K V +VINYD P
Sbjct: 582 IMSAAQVPAITIHGAREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMP 641
Query: 392 GSLEDYVHXXXXXXXXXXXXXXXXFFTAAN-ARFAKELITILEEAGQKVSPEL--AAMGR 448
+++DY+H F + A+ + +L+ L +A Q V + AA G
Sbjct: 642 NNIDDYIHRIGRTGRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWMKEAAGGT 701
Query: 449 GAP 451
P
Sbjct: 702 SNP 704
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 323 (118.8 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 72/182 (39%), Positives = 105/182 (57%)
Query: 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLL 155
+P KSF D P + + + +AG+ TPIQ P+ G+D++ A+TGSGKT A+LL
Sbjct: 295 QPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLL 354
Query: 156 PAIVHVNAQPFLAPG-DG---PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP 211
P + + + L G +G P ++L PTRELA QI E KF S ++ +YGG+
Sbjct: 355 PIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGIN 414
Query: 212 KGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKI 270
G + KG I++ T GR+ E L + YLVLDEADRM+D MGF P+I++I
Sbjct: 415 VGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQI 474
Query: 271 LS 272
++
Sbjct: 475 IN 476
Score = 209 (78.6 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 54/183 (29%), Positives = 88/183 (48%)
Query: 283 ANHAIRQHVDIVSESQKYNKLVKLLEDIMDG-----------SRILIFMDTKKGCDQITR 331
AN + Q ++ + K +KL+KLL +D + ++F+ +K D +
Sbjct: 522 ANKCVIQEFELCDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLAS 581
Query: 332 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 391
+ PA++IHG + Q ER L F++G P++ AT V RGLD+K V +VINYD P
Sbjct: 582 IMSAAQVPAITIHGAREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMP 641
Query: 392 GSLEDYVHXXXXXXXXXXXXXXXXFFTAAN-ARFAKELITILEEAGQKVSPEL--AAMGR 448
+++DY+H F + A+ + +L+ L +A Q V + AA G
Sbjct: 642 NNIDDYIHRIGRTGRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWMKEAAGGT 701
Query: 449 GAP 451
P
Sbjct: 702 SNP 704
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 336 (123.3 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 72/173 (41%), Positives = 105/173 (60%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F ++ I+K G+ +PT IQ P A+ G+D++ A TG+GKT A+LLP H
Sbjct: 15 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ 220
+ P PG P VL+L PTRELA+QI ++S + +KIK+ I GGV G L
Sbjct: 75 LLDYPRTKPGF-PRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILT 133
Query: 221 KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273
+I++ATPGRL++ +E+ + R + LVLDEADRMLD+GF I +I+++
Sbjct: 134 STTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAE 186
Score = 178 (67.7 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 39/136 (28%), Positives = 75/136 (55%)
Query: 268 KKILSQVII--GSPDLKANHAIRQHVDIVSESQ-KYNKLVKLLEDIMDG-SRILIFMDTK 323
+++L++ + P K I Q + + ++ K N LV L+ +G R ++F + +
Sbjct: 210 EEVLNEPVFLESKPSRKEKAVIHQWLHLADDANHKLNLLVNTLKQ--EGVERTVVFANKR 267
Query: 324 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK 383
+ ++ +L + P + + G Q +R+ + FK G+ ++ ATDVAARGLD+ D+
Sbjct: 268 ETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVLVATDVAARGLDIDDIS 327
Query: 384 YVINYDFPGSLEDYVH 399
+VIN+D P ++ Y+H
Sbjct: 328 HVINFDMPRKVDIYIH 343
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 504 (182.5 bits), Expect = 2.2e-47, P = 2.2e-47
Identities = 108/230 (46%), Positives = 147/230 (63%)
Query: 89 VEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSG 148
V G P+P SF GF + +M +I K+ + +PTPIQ QG P+AL GRD+IGIA+TGSG
Sbjct: 243 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSG 302
Query: 149 KTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYG 208
KT A++ P ++H+ Q L PGDGPI +++ PTREL QI E +FG + ++S +YG
Sbjct: 303 KTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYG 362
Query: 209 GVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIK 268
G Q + LQ+G EIV+ TPGRLID ++ TNL+RV+YLV DEADRM DMGFE Q++
Sbjct: 363 GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422
Query: 269 KILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRIL 317
I S V PD RQ + + +K K+ KL DI+ D R++
Sbjct: 423 SIASHV---RPD-------RQTLLFSATFRK--KIEKLARDILIDPIRVV 460
Score = 264 (98.0 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 69/234 (29%), Positives = 114/234 (48%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQVII 276
+LQ+ +V R+ DM +R + V + +L F +I+K+ ++I
Sbjct: 397 NLQRVSYLVFDEADRMFDM--GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILI 454
Query: 277 G-----SPDL-KANHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI 329
D+ +AN + Q V+I+ S K+N L + L + +L+F+ K +++
Sbjct: 455 DPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEEL 514
Query: 330 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD 389
L+ +G +HGD Q+ER+ V+S+FK P++ ATDVAARGLD+ +K VINYD
Sbjct: 515 ANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYD 574
Query: 390 FPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
++ + H T ++ FA +L+ LE A Q VS EL
Sbjct: 575 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKEL 628
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 295 (108.9 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 65/174 (37%), Positives = 104/174 (59%)
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
++FR++G + +++ + + G+ +PTPIQ+ + G+D++G A+TG+GKT A+ LP +
Sbjct: 6 RTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65
Query: 159 VHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK-IKSTCIYGGVPKGPQVR 217
V +Q P +LVLAPTRELAVQ+ + + + K IYGG Q+
Sbjct: 66 NKVTSQTT------PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLN 119
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271
L++G ++++ TPGR++D + L + LVLDEAD ML MGF I+ IL
Sbjct: 120 ALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWIL 173
Score = 233 (87.1 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 57/182 (31%), Positives = 94/182 (51%)
Query: 266 QIKKILSQVIIGSPDLK--ANH----AIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIF 319
QIK++ ++ + + ++ A+H +I Q VS+ K LV++LE + + I+IF
Sbjct: 192 QIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLE-VENTEGIIIF 250
Query: 320 MDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 379
+ T+ C ++ +L G+ + +HGD +Q R+ + + K GK I+ ATDVAARGLDV
Sbjct: 251 VRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAARGLDV 310
Query: 380 KDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKV 439
+ + +V+NYD P E YVH F T+ R + TI ++
Sbjct: 311 ERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLR---TIERATNSRI 367
Query: 440 SP 441
SP
Sbjct: 368 SP 369
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 338 (124.0 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 74/170 (43%), Positives = 102/170 (60%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F D ++Q + G PT IQ Q P+AL G+DL+ ++TGSGKTLA+LLPA+
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ 220
V + L+ D P VL+L PTRELA Q+ + A+++ K+ + GG Q + L
Sbjct: 63 VISTRALSKRD-PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALA 121
Query: 221 KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKI 270
K ++ATPGR+ D LE N L + L+LDEADRMLD+GF PQ+K I
Sbjct: 122 KEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAI 171
Score = 174 (66.3 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 42/128 (32%), Positives = 69/128 (53%)
Query: 274 VIIGSPDLKANHA-IRQHVDIVSE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITR 331
V IG+ A H I Q + + K L +LL D +++IF T+ +++
Sbjct: 208 VAIGTAH--AEHQDISQRIYLCDHLDHKEALLSRLLSD-ESHKQVIIFTATRADTERLAA 264
Query: 332 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 391
+L G+ ++ G+ QA R+ ++ +F G+ I+ TDVA+RGLD+ +V VIN+D P
Sbjct: 265 KLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMP 324
Query: 392 GSLEDYVH 399
E+YVH
Sbjct: 325 KFAEEYVH 332
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 338 (124.0 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 74/170 (43%), Positives = 102/170 (60%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F D ++Q + G PT IQ Q P+AL G+DL+ ++TGSGKTLA+LLPA+
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ 220
V + L+ D P VL+L PTRELA Q+ + A+++ K+ + GG Q + L
Sbjct: 63 VISTRALSKRD-PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALA 121
Query: 221 KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKI 270
K ++ATPGR+ D LE N L + L+LDEADRMLD+GF PQ+K I
Sbjct: 122 KEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAI 171
Score = 174 (66.3 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 42/128 (32%), Positives = 69/128 (53%)
Query: 274 VIIGSPDLKANHA-IRQHVDIVSE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITR 331
V IG+ A H I Q + + K L +LL D +++IF T+ +++
Sbjct: 208 VAIGTAH--AEHQDISQRIYLCDHLDHKEALLSRLLSD-ESHKQVIIFTATRADTERLAA 264
Query: 332 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 391
+L G+ ++ G+ QA R+ ++ +F G+ I+ TDVA+RGLD+ +V VIN+D P
Sbjct: 265 KLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMP 324
Query: 392 GSLEDYVH 399
E+YVH
Sbjct: 325 KFAEEYVH 332
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 317 (116.6 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 72/175 (41%), Positives = 104/175 (59%)
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
K+F + +++ ++ G+ E TPIQA P+ L G+D+I A+TGSGKT A+ + +
Sbjct: 4 KAFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLL 63
Query: 159 VHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA-SSKIKSTCIYGGVPKGPQVR 217
++A F LVL PTRELA Q+ +E + + IK I GGVP GPQ+
Sbjct: 64 SRLDALSFRVQA-----LVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLG 118
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272
L+ G +VI TPGRL+D L + +L + LVLDEADRMLDMGF+ I +++
Sbjct: 119 SLEHGAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIA 173
Score = 195 (73.7 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 46/126 (36%), Positives = 68/126 (53%)
Query: 274 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333
V + ++ AI Q V Q+ + ++L S LIF +TK C ++ L
Sbjct: 204 VEVSVDEVHGEGAIEQVFYEVDSGQRIEAVERILGHYRPESA-LIFCNTKLECQEVANAL 262
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ G+ AL+IHGD Q ERD VL F + ++ ATDVAARGLD+K++ VINY+ +
Sbjct: 263 AVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVATDVAARGLDIKELSAVINYELTRN 322
Query: 394 LEDYVH 399
E + H
Sbjct: 323 PEVHTH 328
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 506 (183.2 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 104/221 (47%), Positives = 138/221 (62%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGRDVPKPVKSFRDVGFPDYVMQEISK 116
PF + FY E +A MS I V G DVPKPV+ + G + I K
Sbjct: 499 PFRRKFYTEPSDLAQMSEEEAANLRLELDGIKVRGLDVPKPVQKWSQCGLGIQTLDVIDK 558
Query: 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176
GF T IQAQ P + GRD+IG+A+TGSGKT+A+L+P H+ Q L +GPI L
Sbjct: 559 LGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKDQRPLENMEGPIGL 618
Query: 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM 236
++ PTRELA QI ++ F + +++ C YGG P Q+ +L++G EI++ TPGR+ID+
Sbjct: 619 IMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCTPGRMIDL 678
Query: 237 LESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L ++ TNLRRVTY+VLDEADRM DMGFEPQ+ KILS V
Sbjct: 679 LAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNV 719
Score = 319 (117.4 bits), Expect = 2.6e-27, P = 2.6e-27
Identities = 81/241 (33%), Positives = 132/241 (54%)
Query: 215 QVRDLQKGVEIVIATPGRLIDM-LESHN----TNLRRVTYLVLDEADRMLDMGFEPQIKK 269
+V +L++ +V+ R+ DM E +N+R VL A +M E +K
Sbjct: 685 RVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSATFPRNM--EALARK 742
Query: 270 ILS---QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-----DGSRILIFMD 321
L+ ++++G + A I Q V++ +E +K+ +L++LL ++ + +R LIF+D
Sbjct: 743 TLTKPIEIVVGGRSVVAPE-ITQIVEVCNEEKKFVRLLELLGNLYSTDENEDARSLIFVD 801
Query: 322 TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 381
++ D + R+L G+P +SIHG K Q +RD + +FKAG P++ AT VAARGLDVK
Sbjct: 802 RQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQ 861
Query: 382 VKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSP 441
+K V+NYD P LEDYVH F T R++ ++ L+++GQ+V P
Sbjct: 862 LKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKALKQSGQEV-P 920
Query: 442 E 442
E
Sbjct: 921 E 921
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 108/232 (46%), Positives = 151/232 (65%)
Query: 58 PFEKNFYVESPSVAAMSXXXXXXXXXXXX-ITV-------EGRD---VPKPVKSFRD--V 104
P KNFY E+P VA ++ ITV EG +P PV +F
Sbjct: 230 PLTKNFYKEAPEVANLTKSEIERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQCFA 289
Query: 105 GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQ 164
+PD +++EI+K GF +P+PIQ+Q WP+ L+G D+IGIA+TG+GKTLA+LLP ++H Q
Sbjct: 290 EYPD-MLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQ 348
Query: 165 --PFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG 222
P G G VLVLAPTRELA+QI+ E K+ +K+ C+YGG + Q+ DL++G
Sbjct: 349 STPRGTRG-GANVLVLAPTRELALQIEMEVKKYSFRG-MKAVCVYGGGNRNMQISDLERG 406
Query: 223 VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
EI+I TPGRL D++ ++ ++ +TYLVLDEADRMLDMGFEPQI+K++ +
Sbjct: 407 AEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDI 458
Score = 341 (125.1 bits), Expect = 3.9e-30, P = 3.9e-30
Identities = 77/242 (31%), Positives = 131/242 (54%)
Query: 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL-DEADRMLDMGFEPQIKKILS-- 272
V D+ +V+ R++DM +R+V + D M + P ++++
Sbjct: 425 VIDVSTITYLVLDEADRMLDM--GFEPQIRKVMLDIRPDRQTIMTSATWPPGVRRLAQSY 482
Query: 273 -----QVIIGSPDLKANHAIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGC 326
QV +GS DL A H+++Q + ++ + K+N + ++++ +I+IF K
Sbjct: 483 MKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMSSTDKIIIFCGRKVRA 542
Query: 327 DQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 386
D ++ +L +DG+ IHG++ Q +R+ +++ K+G I+ ATDVA+RGLD++D+ +VI
Sbjct: 543 DDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITHVI 602
Query: 387 NYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELAAM 446
NYDFP ++E+YVH FFT + AKELI IL+EA Q+V EL M
Sbjct: 603 NYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQEAEQEVPDELHNM 662
Query: 447 GR 448
R
Sbjct: 663 AR 664
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 355 (130.0 bits), Expect = 5.1e-47, Sum P(2) = 5.1e-47
Identities = 86/240 (35%), Positives = 131/240 (54%)
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRV-TYLVLDEADRMLDMGFEPQIKKILS---- 272
+L K + +VI RL+DM LR++ T + ++ L + Q++K+
Sbjct: 498 NLLKCIYVVIDEADRLLDM--GFEKQLRKIMTQVNKNKQLLFLTATWPEQVRKLAYDFCS 555
Query: 273 ----QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQ 328
++ IG +L AN I Q+V I S KL+ L++ + ++ILIF DTK+ CD
Sbjct: 556 YDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYENNKILIFCDTKRNCDN 615
Query: 329 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 388
+ ++LR + ALSIHGDK Q ERD +L+ +K + I+ ATDVA+RGLD+K++ VINY
Sbjct: 616 LCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGLDIKNISVVINY 675
Query: 389 DFPGSLEDYVHXXXXXXXXXXXXXXXXFFT-----AANARFAKELITILEEAGQKVSPEL 443
D P ++EDY+H FF+ +FAKELI +L + Q V P+L
Sbjct: 676 DIPNTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFAKELIKLLNKTNQTVPPQL 735
Score = 291 (107.5 bits), Expect = 4.8e-40, Sum P(2) = 4.8e-40
Identities = 54/99 (54%), Positives = 75/99 (75%)
Query: 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID 235
L+L PTREL +Q+ E F + IKS +YGGVPK Q+ +L+KG +I++ATPGRL+D
Sbjct: 431 LILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRLLD 490
Query: 236 MLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
LE+ N NL + Y+V+DEADR+LDMGFE Q++KI++QV
Sbjct: 491 FLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQV 529
Score = 171 (65.3 bits), Expect = 5.1e-47, Sum P(2) = 5.1e-47
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157
+ F DV F + ++ ++ F EPT IQ WP+AL G+DLIG+AETGSGKTLA++LP
Sbjct: 287 INKFSDVCFHESILNYLNNK-FSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPC 345
Query: 158 IVHV 161
+H+
Sbjct: 346 FMHI 349
Score = 38 (18.4 bits), Expect = 4.7e-33, Sum P(2) = 4.7e-33
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 53 LDGLTPFEKNFYVESPSV 70
LD + FEKN ++S +V
Sbjct: 444 LDEIKSFEKNLPIKSVAV 461
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 301 (111.0 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 69/181 (38%), Positives = 107/181 (59%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
+F ++G ++ +++ + +PTPIQA+ P GRDLI A TGSGKT + LP +
Sbjct: 9 TFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQ 68
Query: 160 HVNAQPFLAPGD----GPIV--LVLAPTRELAVQIQQESTKFGA--SSKIKSTCIYGGVP 211
+ ++ G G V LVL PTRELA Q+ + + +IK+ ++GGV
Sbjct: 69 KLRED--ISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVS 126
Query: 212 KGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271
Q+ L+ GV+I++ATPGRL+D++ S+ L +V LVLDEADRML +GF ++ +L
Sbjct: 127 VNIQMLALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALL 186
Query: 272 S 272
+
Sbjct: 187 A 187
Score = 208 (78.3 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 50/140 (35%), Positives = 79/140 (56%)
Query: 265 PQIKKILSQVIIGSP---DLKANHA--IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIF 319
P+ L+Q ++ +P L++ A + Q V V++ +K L L++ + LIF
Sbjct: 203 PEQVTTLTQELLNNPIEIQLQSADASTLVQRVFTVNKGEKTAVLAHLIQQ-EQWRQALIF 261
Query: 320 MDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 379
++ K C+ + +L G A HGDK Q+ER VL FKAG ++ ATD+AARGLD+
Sbjct: 262 VNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEVLIATDIAARGLDI 321
Query: 380 KDVKYVINYDFPGSLEDYVH 399
+ + VIN++ P S DY+H
Sbjct: 322 EKLPVVINFNLPRSPSDYMH 341
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 497 (180.0 bits), Expect = 1.6e-46, P = 1.6e-46
Identities = 101/220 (45%), Positives = 138/220 (62%)
Query: 59 FEKNFYVESPSVAAMS-XXXXXXXXXXXXITVEGRDVPKPVKSFRDVGFPDYVMQEISKA 117
F+K+FYVE + +S I + G D PKPV S+ G + I+
Sbjct: 377 FKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSL 436
Query: 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177
G+ +PT IQAQ P GRD+IG+A+TGSGKT+A+LLP H+ Q L G+GPI ++
Sbjct: 437 GYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAII 496
Query: 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML 237
+ PTRELAVQI +E F I++ C YGG P Q+ DL++G EIV+ TPGR+ID+L
Sbjct: 497 MTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVL 556
Query: 238 ESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
++ TNL R TYLVLDEADRM D+GFEPQ+ +I++ +
Sbjct: 557 SANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNI 596
Score = 271 (100.5 bits), Expect = 6.6e-21, P = 6.6e-21
Identities = 70/242 (28%), Positives = 122/242 (50%)
Query: 215 QVRDLQKGVEIVIATPGRLIDM-LESHN----TNLR--RVTYLVLDEADRMLDMGFEPQI 267
+V +L + +V+ R+ D+ E N+R R T L R ++ +
Sbjct: 562 RVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVL 621
Query: 268 KKILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGS---RILIFMDTKK 324
KK + ++ +G + A+ + Q V++ E K+++L++LL ++ + R L+F+D ++
Sbjct: 622 KKPV-EITVGGRSVVASE-VEQIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQE 679
Query: 325 GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 384
D + L G+ + SIHG K Q +RD +S++KAG ++ AT V ARGLDVK ++
Sbjct: 680 SADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQL 739
Query: 385 VINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPELA 444
V+NYD P +EDYVH F T ++A ++ L+ + Q V EL
Sbjct: 740 VVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQ 799
Query: 445 AM 446
+
Sbjct: 800 TL 801
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 327 (120.2 bits), Expect = 2.0e-46, Sum P(2) = 2.0e-46
Identities = 71/175 (40%), Positives = 110/175 (62%)
Query: 103 DVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI---V 159
++G +++ +S G + PIQ A++GRD+IG A TG+GKTLA+ +P I +
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 160 HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219
NA+ G P+ LVLAPTRELA Q+++E + S + + C+YGG P G Q+R L
Sbjct: 168 KYNAKH--GRGRNPLCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQMRQL 223
Query: 220 QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
GV++ + TPGR+ID+++ NL V ++VLDEAD+ML +GF ++ IL ++
Sbjct: 224 DYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKL 278
Score = 190 (71.9 bits), Expect = 2.0e-46, Sum P(2) = 2.0e-46
Identities = 51/180 (28%), Positives = 92/180 (51%)
Query: 275 IIGSPDLKANHAIRQHVDIVSESQKYNKLV-KLLEDIMDGSRILIFMDTKKGCDQITRQL 333
++G D K I + I+++S ++ L+ + G + ++F TK+ D+++ L
Sbjct: 311 LVGDSDQKLADGITTY-SIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYAL 369
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ ++HGD SQ++R+ L+ F+ G I+ ATDVAARGLDV +V +I+Y+ P +
Sbjct: 370 ARS-FKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNN 428
Query: 394 LEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILE-EAGQKVS--PELAAMGRGA 450
E +VH ++ +R K I+E E G + + P +A + RG+
Sbjct: 429 TETFVHRTGRTGRAGKKGSAILIYSQDQSRAVK----IIEREVGSRFTELPSIA-VERGS 483
Score = 37 (18.1 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 252 LDEADRMLDMGFEPQIKKILSQVIIGSPDLKA 283
L + +L P ++ +IGS D+KA
Sbjct: 22 LTSINTVLFHNLAPAATRVSDLALIGSSDVKA 53
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 292 (107.8 bits), Expect = 3.5e-46, Sum P(3) = 3.5e-46
Identities = 69/202 (34%), Positives = 113/202 (55%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
+F +G ++ ++ + G +PTP+Q P L GRD++G+A+TGSGKT A+ LP +
Sbjct: 59 NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILH 118
Query: 160 HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219
+ P+ G LV+ PTRELA Q+ ++ G+ ++ + I GG+ Q L
Sbjct: 119 RLAEDPY-----GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSL 173
Query: 220 QKGVEIVIATPGRLIDMLESHNTNL----RRVTYLVLDEADRMLDMGFEPQIKKILS--- 272
IVI TPGR+ +LE+ N ++ R +LVLDEADR+LD+GF+ +++ I
Sbjct: 174 VSRPHIVITTPGRIKVLLEN-NPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLP 232
Query: 273 ---QVIIGSPDLKAN-HAIRQH 290
Q ++ S + +N A+ +H
Sbjct: 233 KSRQTLLFSATMTSNLQALLEH 254
Score = 196 (74.1 bits), Expect = 3.5e-46, Sum P(3) = 3.5e-46
Identities = 54/163 (33%), Positives = 78/163 (47%)
Query: 281 LKANHAIRQHVDIVSESQKYNKLVKLLEDIMD-GSR-ILIFMDTKKGCDQITRQLRMDGW 338
LK + Q + K LV +L + D G R +IF+ T + C +++ L
Sbjct: 268 LKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEV 327
Query: 339 PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 398
+++H SQ+ R LS+FK+GK PI+ ATDVA+RGLD+ V VINYD P DYV
Sbjct: 328 ENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYV 387
Query: 399 HXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSP 441
H T + + + I EE G+K+ P
Sbjct: 388 HRVGRTARAGRGGLAVSIITETDVKLIHK---IEEEVGKKMEP 427
Score = 37 (18.1 bits), Expect = 3.5e-46, Sum P(3) = 3.5e-46
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 49 RKLDLDGLTP-FEKNFYVESPS 69
+KLD D TP FEK F +PS
Sbjct: 31 QKLDSDQNTPQFEK-FTNPNPS 51
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 342 (125.4 bits), Expect = 4.0e-46, Sum P(2) = 4.0e-46
Identities = 71/175 (40%), Positives = 109/175 (62%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
+F D G + +++ ++++G+ PTPIQ + P L G D+ G+A+TG+GKT A++LP I
Sbjct: 5 TFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQ 64
Query: 160 HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219
++ A P L+L PTRELA Q+ + K+G K+ + GGV Q L
Sbjct: 65 RLSTGR--ARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLL 122
Query: 220 QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
Q+GV+++IATPGRL+D + + V L++DEADRMLDMGF P I+KI +++
Sbjct: 123 QRGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKL 177
Score = 165 (63.1 bits), Expect = 4.0e-46, Sum P(2) = 4.0e-46
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 317 LIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 376
++F + K D + L G A IHGD Q+ R L F+ GK ++ A+DVAARG
Sbjct: 252 IVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVAARG 311
Query: 377 LDVKDVKYVINYDFPGSLEDYVH 399
LD+ DV +V N+ P EDYVH
Sbjct: 312 LDIPDVGHVFNFGPPPKDEDYVH 334
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 314 (115.6 bits), Expect = 4.9e-46, Sum P(2) = 4.9e-46
Identities = 71/177 (40%), Positives = 104/177 (58%)
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
KSF ++G + + G+ +P+ IQ P AL+G+D+IG+AETGSGKT A+ +P +
Sbjct: 44 KSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVL 103
Query: 159 VHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
Q L LVL PTRELA QI Q+ G+ + + I GGV Q
Sbjct: 104 -----QSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMA 158
Query: 219 LQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L + I++ATPGRL+D LE+ NL+ + +L++DEADR+L+M FE ++ KIL +
Sbjct: 159 LARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVI 215
Score = 191 (72.3 bits), Expect = 4.9e-46, Sum P(2) = 4.9e-46
Identities = 46/113 (40%), Positives = 61/113 (53%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++QH V K LV LL + G+ ++F T QI LR G A+ +HG
Sbjct: 258 LKQHYIFVPNKYKETYLVYLLNEHA-GNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQ 316
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
SQ +R L++FK+ I+ TDVAARGLD+ V VINYD P +DYVH
Sbjct: 317 MSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVH 369
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 323 (118.8 bits), Expect = 6.7e-46, Sum P(2) = 6.7e-46
Identities = 70/175 (40%), Positives = 109/175 (62%)
Query: 103 DVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI---V 159
D+G +++ + G + PIQ A++GRD+IG A TG+GKTLA+ +P I +
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 160 HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219
NA+ G P LVLAPTRELA Q+++E + S + + C+YGG P G Q+R+L
Sbjct: 180 KFNAKH--GRGKNPQCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQMREL 235
Query: 220 QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
G+++ + TPGR+ID+++ NL V ++VLDEAD+ML +GF ++ IL ++
Sbjct: 236 NYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL 290
Score = 189 (71.6 bits), Expect = 6.7e-46, Sum P(2) = 6.7e-46
Identities = 43/126 (34%), Positives = 72/126 (57%)
Query: 275 IIGSPDLKANHAIRQHVDIVSESQKYNKLV-KLLEDIMDGSRILIFMDTKKGCDQITRQL 333
++G D K I + I ++S ++ L+++ G + ++F TK+ D++ L
Sbjct: 323 LVGDSDQKLADGITMY-SIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGL 381
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
+ ++HGD SQA+R+ L+ F+ G I+ ATDVAARGLDV +V VI+Y+ P +
Sbjct: 382 AKS-YKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNN 440
Query: 394 LEDYVH 399
E +VH
Sbjct: 441 TETFVH 446
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 489 (177.2 bits), Expect = 1.2e-45, P = 1.2e-45
Identities = 102/229 (44%), Positives = 145/229 (63%)
Query: 50 KLDLDGLTPFEKNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGRDVPKPVKSFRDVGFPD 108
KLD+ P KNF+VE ++ M+ I V G+DVPKPV+ + G
Sbjct: 331 KLDI---VPVRKNFWVEPYELSEMTEAEVAELRLELDGIKVSGKDVPKPVQKWSLCGLTR 387
Query: 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 168
++ I+K + +PT IQ Q P+ + GRD++G+A+TGSGKT+A+LLP H+ Q +
Sbjct: 388 PILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVK 447
Query: 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 228
+GPI L+L PTRELAVQI ++ F + +++ C YGG P Q+ DL++G EIV+A
Sbjct: 448 DNEGPIGLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGAEIVVA 507
Query: 229 TPGRLIDMLESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
T GR+ID+L ++ +LRR TY+VLDEADRM DMGFEPQ+ KI + V
Sbjct: 508 TTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANV 556
Score = 318 (117.0 bits), Expect = 2.6e-27, P = 2.6e-27
Identities = 81/243 (33%), Positives = 126/243 (51%)
Query: 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQI-----KK 269
+V L++ IV+ R+ DM + ++ V + +L P+I KK
Sbjct: 522 RVVSLRRTTYIVLDEADRMFDM--GFEPQVMKIFANVRPDRQTVLFSATMPKIMDALVKK 579
Query: 270 ILS---QVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTK 323
+L ++ +G + A+ I Q V+I E K+N+L++LL ++ D R LIF++ +
Sbjct: 580 VLKNPVEIEVGGKSVVASE-ITQIVEIRDEKSKFNRLLELLGELYKDDDDVRSLIFVERQ 638
Query: 324 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK 383
+ D++ R+L G+ +S+HG K Q +RD +S+FK+G P+M AT VAARGLDVK +K
Sbjct: 639 EKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAARGLDVKQLK 698
Query: 384 YVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
V+NYD P LEDYVH F T A + LE++GQ V +L
Sbjct: 699 LVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQENCAIGIAKALEQSGQPVPEKL 758
Query: 444 AAM 446
M
Sbjct: 759 IEM 761
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 323 (118.8 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 72/179 (40%), Positives = 108/179 (60%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
+FR++G +++++ + G PTP+QA P L+GRD +G A+TGSGKT A++LP +
Sbjct: 3 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 62
Query: 160 HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219
++ P+ G LVL PTRELA QI ++ G +K + GG+ Q +L
Sbjct: 63 VLSEDPY-----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALEL 117
Query: 220 QKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG---FEPQIKKILSQV 274
+ +VIATPGRL D L S NT +L+++ +LVLDEADR+L+ G F ++ IL V
Sbjct: 118 SRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAV 176
Score = 173 (66.0 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 41/110 (37%), Positives = 63/110 (57%)
Query: 293 IVSESQKYNKLVKLLEDIMDGSR---ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQ 349
+V E+ K LV L++ D I+IF T K C + LR +P++++H Q
Sbjct: 225 LVPEAVKDAYLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQ 284
Query: 350 AERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
+R L++FK+ I+ ATDVAARGLD+ V+ VIN++ PG + Y+H
Sbjct: 285 RQRFAALAKFKSSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIH 334
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 309 (113.8 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 67/170 (39%), Positives = 96/170 (56%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F D +++ + G PT IQ + P AL+ RD++ A TG+GKT ++LLPA+ H
Sbjct: 3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ 220
+ P G VL+L PTRELA QI + + + I GGVP PQ L+
Sbjct: 63 LIDFPRRYSGQAR-VLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALK 121
Query: 221 KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKI 270
++I++ATPGRL++ L+ + V L++DEADRMLDMGF +K I
Sbjct: 122 GNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAI 171
Score = 186 (70.5 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 42/128 (32%), Positives = 68/128 (53%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITR 331
++ + +P K I Q + + + K+ L LL+ D R ++F+ T+ +
Sbjct: 206 EIDVDAPR-KEKAKIHQWIHLADDKDHKFALLCHLLKQ-EDVKRAIVFVKTRDVVSSLEG 263
Query: 332 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 391
QL G P + GD Q +R LS F G+ ++ ATDVAARG+D+ D+ +VIN+D P
Sbjct: 264 QLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMP 323
Query: 392 GSLEDYVH 399
S + Y+H
Sbjct: 324 RSADTYIH 331
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 309 (113.8 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 67/170 (39%), Positives = 96/170 (56%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F D +++ + G PT IQ + P AL+ RD++ A TG+GKT ++LLPA+ H
Sbjct: 3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ 220
+ P G VL+L PTRELA QI + + + I GGVP PQ L+
Sbjct: 63 LIDFPRRYSGQAR-VLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALK 121
Query: 221 KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKI 270
++I++ATPGRL++ L+ + V L++DEADRMLDMGF +K I
Sbjct: 122 GNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAI 171
Score = 186 (70.5 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 42/128 (32%), Positives = 68/128 (53%)
Query: 273 QVIIGSPDLKANHAIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITR 331
++ + +P K I Q + + + K+ L LL+ D R ++F+ T+ +
Sbjct: 206 EIDVDAPR-KEKAKIHQWIHLADDKDHKFALLCHLLKQ-EDVKRAIVFVKTRDVVSSLEG 263
Query: 332 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 391
QL G P + GD Q +R LS F G+ ++ ATDVAARG+D+ D+ +VIN+D P
Sbjct: 264 QLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMP 323
Query: 392 GSLEDYVH 399
S + Y+H
Sbjct: 324 RSADTYIH 331
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 314 (115.6 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 70/179 (39%), Positives = 105/179 (58%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
+F +G ++++Q+ + G PT +Q + P L GRD +G A+TGSGKT A++LP +
Sbjct: 3 TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQ 62
Query: 160 HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219
++ P+ G LVL PTRELA QI ++ G +K I GG+ Q +L
Sbjct: 63 KLSEDPY-----GVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLEL 117
Query: 220 QKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG---FEPQIKKILSQV 274
K +V+ATPGRL D + S +T NL R+ +L++DEADR+L+ G F ++ ILS V
Sbjct: 118 SKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAV 176
Score = 182 (69.1 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 39/97 (40%), Positives = 59/97 (60%)
Query: 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 362
L++ +D D I+IF +T K C +T LR +P +S+H Q +R L++FK+
Sbjct: 238 LIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSN 297
Query: 363 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
I+ ATDVAARGLD+ V+ VIN++ PG + Y+H
Sbjct: 298 VFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIH 334
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 327 (120.2 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 65/176 (36%), Positives = 109/176 (61%)
Query: 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157
+K+F D+ +++ I + GF PT +QA+ P AL GRD++ A TG+GKT A+++PA
Sbjct: 2 IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61
Query: 158 IVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217
+ ++ P G I L+L PTRELA+Q+ +++ ++++ I GGV
Sbjct: 62 LQYLLDFPRRKAGPARI-LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHAD 120
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273
L +IV+ATPGRL++ +++ + R + +L+LDEADRMLDMGF P + ++ ++
Sbjct: 121 ILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTE 176
Score = 167 (63.8 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 36/98 (36%), Positives = 57/98 (58%)
Query: 304 VKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 361
V+LL+ I+ R ++F+ T++ + +L P I G+ Q R+ +S F+
Sbjct: 235 VELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFRE 294
Query: 362 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
G I+ ATDVAARG+DV D+ +VIN+D P S + Y+H
Sbjct: 295 GDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLH 332
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 327 (120.2 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 65/176 (36%), Positives = 109/176 (61%)
Query: 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157
+K+F D+ +++ I + GF PT +QA+ P AL GRD++ A TG+GKT A+++PA
Sbjct: 2 IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61
Query: 158 IVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217
+ ++ P G I L+L PTRELA+Q+ +++ ++++ I GGV
Sbjct: 62 LQYLLDFPRRKAGPARI-LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHAD 120
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273
L +IV+ATPGRL++ +++ + R + +L+LDEADRMLDMGF P + ++ ++
Sbjct: 121 ILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTE 176
Score = 167 (63.8 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 36/98 (36%), Positives = 57/98 (58%)
Query: 304 VKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 361
V+LL+ I+ R ++F+ T++ + +L P I G+ Q R+ +S F+
Sbjct: 235 VELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFRE 294
Query: 362 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
G I+ ATDVAARG+DV D+ +VIN+D P S + Y+H
Sbjct: 295 GDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLH 332
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 323 (118.8 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 72/179 (40%), Positives = 108/179 (60%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
+FR++G +++++ + G PTP+QA P L+GRD +G A+TGSGKT A++LP +
Sbjct: 6 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 65
Query: 160 HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219
++ P+ G LVL PTRELA QI ++ G +K + GG+ Q +L
Sbjct: 66 VLSEDPY-----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALEL 120
Query: 220 QKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG---FEPQIKKILSQV 274
+ +VIATPGRL D L S NT +L+++ +LVLDEADR+L+ G F ++ IL V
Sbjct: 121 SRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAV 179
Score = 173 (66.0 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 41/110 (37%), Positives = 63/110 (57%)
Query: 293 IVSESQKYNKLVKLLEDIMDGSR---ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQ 349
+V E+ K LV L++ D I+IF T K C + LR +P++++H Q
Sbjct: 228 LVPEAVKDAYLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQ 287
Query: 350 AERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
+R L++FK+ I+ ATDVAARGLD+ V+ VIN++ PG + Y+H
Sbjct: 288 RQRFAALAKFKSSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIH 337
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 321 (118.1 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 70/178 (39%), Positives = 107/178 (60%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F ++G +++++ + G +PTP+Q P L+GRD +G A+TGSGKT A++LP +
Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ 220
++ P+ G LVL PTRELA QI ++ G +K I GG+ Q +L
Sbjct: 64 LSEDPY-----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELS 118
Query: 221 KGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG---FEPQIKKILSQV 274
+ +VIATPGRL D L S NT N++++ +LV+DEADR+L+ G F ++ IL+ V
Sbjct: 119 RKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAV 176
Score = 175 (66.7 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 37/97 (38%), Positives = 59/97 (60%)
Query: 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 362
LV+ +D ++ I+IF +T K C + LR +P +++H Q ER L++FK+
Sbjct: 238 LVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297
Query: 363 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
I+ ATDVA+RGLD+ V+ VIN++ PG + Y+H
Sbjct: 298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIH 334
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 300 (110.7 bits), Expect = 2.2e-45, Sum P(2) = 2.2e-45
Identities = 65/182 (35%), Positives = 102/182 (56%)
Query: 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLL 155
KP K+F + + + + ++ AG+ + TPIQ P+ +G D++ A+TGSGKT A+LL
Sbjct: 338 KPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLL 397
Query: 156 PAIVH-VNAQPFLAPGDG---PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP 211
P + ++ G+G P ++L PTRELA QI E KF + ++ +YGG+
Sbjct: 398 PIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLA 457
Query: 212 KGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKI 270
G ++KG I++ T GR+ E L + + VLDEADRM+D MGF I+ I
Sbjct: 458 VGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETI 517
Query: 271 LS 272
++
Sbjct: 518 VN 519
Score = 213 (80.0 bits), Expect = 2.2e-45, Sum P(2) = 2.2e-45
Identities = 51/171 (29%), Positives = 85/171 (49%)
Query: 283 ANHAIRQHVDIVSESQKYNKLVKLLEDIMDG-----------SRILIFMDTKKGCDQITR 331
AN + Q + S+K +KL++LL +D + ++F+ + D +
Sbjct: 565 ANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLAS 624
Query: 332 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 391
L PA++IHG + Q ER L +F+ G P++ AT VA RGLD+K V +VINYD P
Sbjct: 625 ILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMP 684
Query: 392 GSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPE 442
+++DY+H F + + EL+ +L +A Q++ P+
Sbjct: 685 DNIDDYIHRIGRTGRVGNSGRATSFISE-DCSLLSELVGVLADA-QQIVPD 733
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 300 (110.7 bits), Expect = 2.2e-45, Sum P(2) = 2.2e-45
Identities = 65/182 (35%), Positives = 102/182 (56%)
Query: 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLL 155
KP K+F + + + + ++ AG+ + TPIQ P+ +G D++ A+TGSGKT A+LL
Sbjct: 338 KPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLL 397
Query: 156 PAIVH-VNAQPFLAPGDG---PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP 211
P + ++ G+G P ++L PTRELA QI E KF + ++ +YGG+
Sbjct: 398 PIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLA 457
Query: 212 KGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKI 270
G ++KG I++ T GR+ E L + + VLDEADRM+D MGF I+ I
Sbjct: 458 VGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETI 517
Query: 271 LS 272
++
Sbjct: 518 VN 519
Score = 213 (80.0 bits), Expect = 2.2e-45, Sum P(2) = 2.2e-45
Identities = 51/171 (29%), Positives = 85/171 (49%)
Query: 283 ANHAIRQHVDIVSESQKYNKLVKLLEDIMDG-----------SRILIFMDTKKGCDQITR 331
AN + Q + S+K +KL++LL +D + ++F+ + D +
Sbjct: 565 ANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLAS 624
Query: 332 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 391
L PA++IHG + Q ER L +F+ G P++ AT VA RGLD+K V +VINYD P
Sbjct: 625 ILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMP 684
Query: 392 GSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPE 442
+++DY+H F + + EL+ +L +A Q++ P+
Sbjct: 685 DNIDDYIHRIGRTGRVGNSGRATSFISE-DCSLLSELVGVLADA-QQIVPD 733
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 309 (113.8 bits), Expect = 4.0e-45, Sum P(2) = 4.0e-45
Identities = 68/185 (36%), Positives = 114/185 (61%)
Query: 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLP- 156
VK+F ++G + +++ + G+ P+ IQA+ P AL+G+D+IG+A+TGSGKT A+ +P
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67
Query: 157 --AIVHV--NAQPFLAPGDGP--IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 210
A++ +++P P VL+PTRELA+QI ++ GA ++ + GG+
Sbjct: 68 LQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGI 127
Query: 211 PKGPQVRDLQKGVEIVIATPGRLID-MLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKK 269
+ Q L K +++ATPGRL D M ++ +L+ + YLVLDEADR+L+ FE + +
Sbjct: 128 DRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQ 187
Query: 270 ILSQV 274
IL ++
Sbjct: 188 ILEEI 192
Score = 183 (69.5 bits), Expect = 4.0e-45, Sum P(2) = 4.0e-45
Identities = 44/113 (38%), Positives = 65/113 (57%)
Query: 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346
++Q V+ K LV +L + M S +IF T G + LR G+ A+ I G
Sbjct: 235 LKQQYRFVAAKYKDCYLVYILSE-MPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQ 293
Query: 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
+Q++R L++FKAG+ I+ TDVA+RGLD+ V VINYD P + +DY+H
Sbjct: 294 MTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIH 346
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 314 (115.6 bits), Expect = 4.8e-45, Sum P(2) = 4.8e-45
Identities = 71/176 (40%), Positives = 105/176 (59%)
Query: 104 VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNA 163
+ P + + + K G PIQ AL+GRD+I A+TG+GKTLA+ +P I +
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE 166
Query: 164 QP-----FLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
+ F G P LVLAPTRELA Q+++E + ++ + + C+YGGV Q
Sbjct: 167 EAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSA 224
Query: 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L +GV++V+ TPGR+ID++E + L V YLVLDEAD+ML +GFE ++ IL +
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280
Score = 195 (73.7 bits), Expect = 4.8e-45, Sum P(2) = 4.8e-45
Identities = 43/154 (27%), Positives = 75/154 (48%)
Query: 275 IIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR 334
++G D K I+ + + + K L L+ G + ++F TK+ D+++ L
Sbjct: 313 LVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALS 372
Query: 335 MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSL 394
+ ++HGD SQ +R+ L+ F+ GK ++ ATDVA+RGLD+ +V VI+Y+ P
Sbjct: 373 -NSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDP 431
Query: 395 EDYVHXXXXXXXXXXXXXXXXFFTAANARFAKEL 428
E +VH T++ R + L
Sbjct: 432 ETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSL 465
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 305 (112.4 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
Identities = 67/174 (38%), Positives = 103/174 (59%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F D+ V+ + GF T IQA+ P+ L+G DL G A+TG GKT+A+L H
Sbjct: 11 FADLNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLAATFHH 70
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ 220
+ Q + P L++APTRELA+QI +++T+ S+ ++ +YGG Q +L+
Sbjct: 71 L-LQKEAPTHNQPRALIMAPTRELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQRLELE 129
Query: 221 KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
GV+I+I T GRLID ++ NL+ + +VLDEADRM D+GF I+ + ++
Sbjct: 130 AGVDILIGTCGRLIDYMKQGIYNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKM 183
Score = 185 (70.2 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
Identities = 43/121 (35%), Positives = 62/121 (51%)
Query: 279 PDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW 338
P+ K N I + + S K L L+E+ + ++F +TK C+++ L D
Sbjct: 220 PEQKTNSRISEELFYPSNEDKMTLLQTLIEEDWP-EKAIVFANTKHVCEKVFDHLNADKI 278
Query: 339 PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 398
+ GD Q +R +L EF G I+ ATDVAARGL + V +V NYD P +DYV
Sbjct: 279 RVGLLTGDVPQKKRLKILEEFTDGTVDILVATDVAARGLHIPSVTHVFNYDLPDDCQDYV 338
Query: 399 H 399
H
Sbjct: 339 H 339
>RGD|1359520 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1359520 GO:GO:0005524
GO:GO:0046872 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q5STU4 GeneTree:ENSGT00610000086076 CTD:83479
HOGENOM:HOG000006599 HOVERGEN:HBG106120 EMBL:BC081871
IPI:IPI00371561 RefSeq:NP_001005535.1 RefSeq:NP_001177749.1
UniGene:Rn.230507 UniGene:Rn.34313 ProteinModelPortal:Q66HG7
SMR:Q66HG7 PhosphoSite:Q66HG7 PRIDE:Q66HG7
Ensembl:ENSRNOT00000043798 GeneID:289402 KEGG:rno:289402
UCSC:RGD:1359520 NextBio:629792 ArrayExpress:Q66HG7
Genevestigator:Q66HG7 Uniprot:Q66HG7
Length = 589
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 120/408 (29%), Positives = 212/408 (51%)
Query: 47 SPRKLDLDGLTPFEKNFYV--ESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDV 104
SP+ + +P + FYV E P + A+ I+V+G++V +P+ F
Sbjct: 150 SPQGAASEPESPLDA-FYVYKEHPFIVALRDDQIETLKQQLGISVQGQEVARPIIDFEHC 208
Query: 105 GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQ 164
GFP+ + Q + K+G+ PTPIQ Q P+ L GRD++ A+TGSGKT A+LLP I+
Sbjct: 209 GFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRA--- 265
Query: 165 PFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQKGV 223
L P L+L PTRELA+QI++++ + ++K+ + GG+P PQ+ LQ+ V
Sbjct: 266 --LPEDKTPSALILTPTRELAIQIERQAKELMRGLPRMKTVLLVGGLPLPPQLYRLQQHV 323
Query: 224 E----IVIATPGRLIDMLESHNTNLRRV--TYLVLDEADRMLDMGFEPQIKKILSQVIIG 277
+ + + +++D+LE ++ + V + + D D++ D ++ ++ G
Sbjct: 324 KADTMLKMGFQQQVLDVLEHTPSDCQTVLVSATIPDSIDQLADQLLHNPVR-----IVTG 378
Query: 278 SPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQL-RM 335
+L + ++RQ + V + K KL ++L D + +L+F+D K G D ++ + ++
Sbjct: 379 DKNLPCS-SVRQIILWVEDPAKKKKLFEILNDQKLFKPPVLVFVDCKLGADLLSEAVQKI 437
Query: 336 DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLE 395
G + SIH +KSQ ER +L G ++ +T + RGLD+ +VK V+N+D P SL+
Sbjct: 438 TGLSSTSIHSEKSQVERREILKGLLEGDYEVVVSTGILGRGLDLVNVKLVVNFDMPSSLD 497
Query: 396 DYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
+YVH F + R ++ ++ G + P+L
Sbjct: 498 EYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPTGSILPPQL 545
>UNIPROTKB|Q66HG7 [details] [associations]
symbol:Ddx59 "Probable ATP-dependent RNA helicase DDX59"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1359520
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 GeneTree:ENSGT00610000086076 CTD:83479
HOGENOM:HOG000006599 HOVERGEN:HBG106120 EMBL:BC081871
IPI:IPI00371561 RefSeq:NP_001005535.1 RefSeq:NP_001177749.1
UniGene:Rn.230507 UniGene:Rn.34313 ProteinModelPortal:Q66HG7
SMR:Q66HG7 PhosphoSite:Q66HG7 PRIDE:Q66HG7
Ensembl:ENSRNOT00000043798 GeneID:289402 KEGG:rno:289402
UCSC:RGD:1359520 NextBio:629792 ArrayExpress:Q66HG7
Genevestigator:Q66HG7 Uniprot:Q66HG7
Length = 589
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 120/408 (29%), Positives = 212/408 (51%)
Query: 47 SPRKLDLDGLTPFEKNFYV--ESPSVAAMSXXXXXXXXXXXXITVEGRDVPKPVKSFRDV 104
SP+ + +P + FYV E P + A+ I+V+G++V +P+ F
Sbjct: 150 SPQGAASEPESPLDA-FYVYKEHPFIVALRDDQIETLKQQLGISVQGQEVARPIIDFEHC 208
Query: 105 GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQ 164
GFP+ + Q + K+G+ PTPIQ Q P+ L GRD++ A+TGSGKT A+LLP I+
Sbjct: 209 GFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRA--- 265
Query: 165 PFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQKGV 223
L P L+L PTRELA+QI++++ + ++K+ + GG+P PQ+ LQ+ V
Sbjct: 266 --LPEDKTPSALILTPTRELAIQIERQAKELMRGLPRMKTVLLVGGLPLPPQLYRLQQHV 323
Query: 224 E----IVIATPGRLIDMLESHNTNLRRV--TYLVLDEADRMLDMGFEPQIKKILSQVIIG 277
+ + + +++D+LE ++ + V + + D D++ D ++ ++ G
Sbjct: 324 KADTMLKMGFQQQVLDVLEHTPSDCQTVLVSATIPDSIDQLADQLLHNPVR-----IVTG 378
Query: 278 SPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQL-RM 335
+L + ++RQ + V + K KL ++L D + +L+F+D K G D ++ + ++
Sbjct: 379 DKNLPCS-SVRQIILWVEDPAKKKKLFEILNDQKLFKPPVLVFVDCKLGADLLSEAVQKI 437
Query: 336 DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLE 395
G + SIH +KSQ ER +L G ++ +T + RGLD+ +VK V+N+D P SL+
Sbjct: 438 TGLSSTSIHSEKSQVERREILKGLLEGDYEVVVSTGILGRGLDLVNVKLVVNFDMPSSLD 497
Query: 396 DYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
+YVH F + R ++ ++ G + P+L
Sbjct: 498 EYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPTGSILPPQL 545
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 316 (116.3 bits), Expect = 7.6e-45, Sum P(2) = 7.6e-45
Identities = 71/178 (39%), Positives = 106/178 (59%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F ++ +++++ + G +PTP+Q P L+GRD +G A+TGSGKT A++LP +
Sbjct: 4 FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ 220
++ P+ G LVL PTRELA QI ++ G +K I GG+ Q +L
Sbjct: 64 LSEDPY-----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELS 118
Query: 221 KGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG---FEPQIKKILSQV 274
+ +VIATPGRL D L S NT N++++ +LVLDEADR+L+ G F ++ ILS V
Sbjct: 119 RKPHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAV 176
Score = 176 (67.0 bits), Expect = 7.6e-45, Sum P(2) = 7.6e-45
Identities = 37/97 (38%), Positives = 58/97 (59%)
Query: 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 362
LV+ +D ++ I+IF +T K C + LR +P +++H Q ER L+ FK+
Sbjct: 238 LVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSS 297
Query: 363 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
I+ ATDVA+RGLD+ V+ VIN++ PG + Y+H
Sbjct: 298 TYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIH 334
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 313 (115.2 bits), Expect = 4.2e-44, Sum P(2) = 4.2e-44
Identities = 69/178 (38%), Positives = 107/178 (60%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F ++G +++++ + G +PTP+Q P L+GRD +G A+TGSGKT A++LP +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ 220
++ P+ G LVL PTRELA QI ++ G +K I GG+ Q +L
Sbjct: 64 LSEDPY-----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELS 118
Query: 221 KGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG---FEPQIKKILSQV 274
+ +VIATPGRL D L S NT +++++ +LV+DEADR+L+ G F ++ IL+ V
Sbjct: 119 RKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAV 176
Score = 173 (66.0 bits), Expect = 4.2e-44, Sum P(2) = 4.2e-44
Identities = 41/110 (37%), Positives = 63/110 (57%)
Query: 293 IVSESQKYNKLVKLLEDIMDGSR---ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQ 349
+V E K LV L+++ D I+IF +T K C + LR +P +++H Q
Sbjct: 225 LVPEKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQ 284
Query: 350 AERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
ER L++FK+ I+ ATDVA+RGLD+ V+ VIN++ PG + Y+H
Sbjct: 285 KERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIH 334
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 313 (115.2 bits), Expect = 4.9e-44, Sum P(2) = 4.9e-44
Identities = 69/178 (38%), Positives = 107/178 (60%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F ++G +++++ + G +PTP+Q P L+GRD +G A+TGSGKT A++LP +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ 220
++ P+ G LVL PTRELA QI ++ G +K I GG+ Q +L
Sbjct: 64 LSEDPY-----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELS 118
Query: 221 KGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG---FEPQIKKILSQV 274
+ +VIATPGRL D L S NT +++++ +LV+DEADR+L+ G F ++ IL+ V
Sbjct: 119 RKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAV 176
Score = 173 (66.0 bits), Expect = 4.9e-44, Sum P(2) = 4.9e-44
Identities = 41/110 (37%), Positives = 63/110 (57%)
Query: 293 IVSESQKYNKLVKLLEDIMDGSR---ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQ 349
+V E K LV L+++ D I+IF +T K C + LR +P +++H Q
Sbjct: 225 LVPEKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQ 284
Query: 350 AERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
ER L++FK+ I+ ATDVA+RGLD+ V+ VIN++ PG + Y+H
Sbjct: 285 KERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIH 334
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 338 (124.0 bits), Expect = 5.4e-44, Sum P(2) = 5.4e-44
Identities = 75/179 (41%), Positives = 110/179 (61%)
Query: 94 VPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 153
V + + +F ++ +++ + K GF +PTPIQA+ P+AL G+D++ A TGSGKT A+
Sbjct: 185 VEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAF 244
Query: 154 LLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKG 213
LLP + + + + VL+L PTRELA+Q Q S I S I GG+
Sbjct: 245 LLPVLERLLFRD--SEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNK 302
Query: 214 PQVRDLQKGVEIVIATPGRLID-MLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271
Q +L+K ++VIATPGRLID +L +H L + L+LDEADR+LDMGF+ +I KI+
Sbjct: 303 AQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIV 361
Score = 161 (61.7 bits), Expect = 5.4e-44, Sum P(2) = 5.4e-44
Identities = 36/128 (28%), Positives = 64/128 (50%)
Query: 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 362
L+ L + + +IF +KK ++ + A +HG+ SQ +R L +F+ G
Sbjct: 426 LLSLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDG 485
Query: 363 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANA 422
+ + A+DVA+RGLD+ VK VINY+ P ++ +Y+H F T +
Sbjct: 486 QVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDR 545
Query: 423 RFAKELIT 430
+ K+++T
Sbjct: 546 KLLKDIVT 553
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 310 (114.2 bits), Expect = 5.7e-44, Sum P(2) = 5.7e-44
Identities = 66/176 (37%), Positives = 100/176 (56%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
+F +G ++ +K GF +P IQ + P ALKGRD+IG+A+TGSGKT A+++P +
Sbjct: 120 TFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVL- 178
Query: 160 HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219
Q L G L LAPTRELA QI + G++ +K+ + GG+ Q L
Sbjct: 179 ----QKLLEAPQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLAL 234
Query: 220 QKGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
K +V+ +PGR++ LE + NLR + Y ++DEADR+ FE ++ IL +
Sbjct: 235 AKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVI 290
Score = 181 (68.8 bits), Expect = 5.7e-44, Sum P(2) = 5.7e-44
Identities = 41/97 (42%), Positives = 58/97 (59%)
Query: 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 362
L +L ++ G+ +IF T +I LR G+ A+ I+GD Q +R L++FK G
Sbjct: 349 LAYILNELA-GNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQG 407
Query: 363 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
I+ ATDVAARGLD+ V VINYD P + ++YVH
Sbjct: 408 TKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVH 444
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 317 (116.6 bits), Expect = 7.3e-44, Sum P(2) = 7.3e-44
Identities = 76/176 (43%), Positives = 109/176 (61%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
+++D+G + + Q + + P+ IQ + P+AL+G+D+IG+AETGSGKT A+ LP I+
Sbjct: 62 TWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALP-IL 120
Query: 160 HV---NAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216
H N Q + A LVL PTRELA QI ++ G+ IK + GG+ Q
Sbjct: 121 HALLENPQRYFA-------LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQG 173
Query: 217 RDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271
L K I+IATPGRL+D LE+ NL+ + YLV+DEADR+L+M FE ++ KIL
Sbjct: 174 LQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKIL 229
Score = 169 (64.5 bits), Expect = 7.3e-44, Sum P(2) = 7.3e-44
Identities = 37/97 (38%), Positives = 56/97 (57%)
Query: 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 362
LV +L ++ G+ +IF T + LR G A+ +HG SQ +R L++FKA
Sbjct: 291 LVHILNELA-GNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAK 349
Query: 363 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
I+ +TDVA+RGLD+ V V+N+D P +DY+H
Sbjct: 350 NRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIH 386
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 313 (115.2 bits), Expect = 8.6e-44, Sum P(2) = 8.6e-44
Identities = 69/178 (38%), Positives = 107/178 (60%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F ++G +++++ + G +PTP+Q P L+GRD +G A+TGSGKT A++LP +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ 220
++ P+ G LVL PTRELA QI ++ G +K I GG+ Q +L
Sbjct: 64 LSEDPY-----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELS 118
Query: 221 KGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG---FEPQIKKILSQV 274
+ +VIATPGRL D L S NT +++++ +LV+DEADR+L+ G F ++ IL+ V
Sbjct: 119 RKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAV 176
Score = 170 (64.9 bits), Expect = 8.6e-44, Sum P(2) = 8.6e-44
Identities = 41/110 (37%), Positives = 62/110 (56%)
Query: 293 IVSESQKYNKLVKLLEDIMDGSR---ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQ 349
+V E K LV L++ D I+IF +T K C + LR +P +++H Q
Sbjct: 225 LVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQ 284
Query: 350 AERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
ER L++FK+ I+ ATDVA+RGLD+ V+ VIN++ PG + Y+H
Sbjct: 285 KERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIH 334
>TAIR|locus:2167903 [details] [associations]
symbol:PRH75 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0051604 "protein
maturation" evidence=RCA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0017151 "DEAD/H-box RNA helicase binding"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
GO:GO:0003723 GO:GO:0016070 GO:GO:0017151 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB019235 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 EMBL:X99938 EMBL:AY039576 EMBL:AY056137
EMBL:BT008581 IPI:IPI00520493 RefSeq:NP_201025.1 UniGene:At.22598
ProteinModelPortal:Q39189 SMR:Q39189 IntAct:Q39189 STRING:Q39189
PaxDb:Q39189 PRIDE:Q39189 EnsemblPlants:AT5G62190.1 GeneID:836340
KEGG:ath:AT5G62190 GeneFarm:918 TAIR:At5g62190 InParanoid:Q39189
OMA:QCEPPRE PhylomeDB:Q39189 ProtClustDB:CLSN2687322
Genevestigator:Q39189 GermOnline:AT5G62190 Uniprot:Q39189
Length = 671
Score = 315 (115.9 bits), Expect = 2.1e-43, Sum P(2) = 2.1e-43
Identities = 79/188 (42%), Positives = 107/188 (56%)
Query: 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPT-PIQAQGWPMALKGRDLIGIAETGSGKTL 151
D P V FR + P ++E KA E PIQA + M L G DL+G A TG GKTL
Sbjct: 93 DNPNAVSKFR-ISAP---LREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTL 148
Query: 152 AYLLPAIVH-VN----AQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCI 206
A++LP + VN ++ + G P VLVL PTRELA Q+ + +G S + S C+
Sbjct: 149 AFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCL 208
Query: 207 YGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQ 266
YGG Q L++GV+IV+ TPGR+ D +E N + + + VLDEAD ML MGF
Sbjct: 209 YGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVED 268
Query: 267 IKKILSQV 274
++ IL +V
Sbjct: 269 VELILGKV 276
Score = 176 (67.0 bits), Expect = 2.1e-43, Sum P(2) = 2.1e-43
Identities = 41/126 (32%), Positives = 74/126 (58%)
Query: 275 IIGSPDLKANHAIRQHVDIVSESQKYNKLVK-LLEDIMDGSRILIFMDTKKGCDQITRQL 333
++G+ +KA++++R H+ I +L+ ++ G + +IF +TK +++ L
Sbjct: 312 LVGNDKMKASNSVR-HIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLL 370
Query: 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393
DG AL HG+ Q++R+ L+ F+ GK + AT+VAARGLD+ DV+ +I + P
Sbjct: 371 --DGSRAL--HGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPRE 426
Query: 394 LEDYVH 399
+E Y+H
Sbjct: 427 VEAYIH 432
>DICTYBASE|DDB_G0293036 [details] [associations]
symbol:ddx5 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0293036 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GenomeReviews:CM000155_GR GO:GO:0000184
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 PROSITE:PS51195
EMBL:AAFI02000199 RefSeq:XP_629283.1 ProteinModelPortal:Q54CD6
EnsemblProtists:DDB0266367 GeneID:8629006 KEGG:ddi:DDB_G0293036
OMA:RISIMLL ProtClustDB:CLSZ2846571 Uniprot:Q54CD6
Length = 697
Score = 308 (113.5 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 76/181 (41%), Positives = 102/181 (56%)
Query: 107 PDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF 166
P+ + K F PT Q WP L G D+IG + GSGKTL YL P I H A+
Sbjct: 214 PNTLKLFFKKTQFPTPTLFQQYAWPAILTGHDIIGTSLPGSGKTLGYLAPMIPHCLARVD 273
Query: 167 L----------APGD--GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214
AP G +VLVL PTREL +Q+ + IK++ IYGG+ K
Sbjct: 274 RGGKNKITGEKAPKQYTGILVLVLVPTRELGLQVHSNTLIITQLFGIKTSVIYGGISKNL 333
Query: 215 QVRDLQKGV-EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273
Q+ L+K +I+I+TPGRLI+M+E+ + +L VT LVLDEAD+ML G PQ+K+I Q
Sbjct: 334 QIEQLEKEKPQILISTPGRLIEMIENGHVDLSSVTMLVLDEADKMLSKGLIPQLKQIRGQ 393
Query: 274 V 274
+
Sbjct: 394 I 394
Score = 183 (69.5 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 45/170 (26%), Positives = 85/170 (50%)
Query: 276 IGSPDL-KANHAIRQHVDIVSESQKYNKLVKLLED--IMDGSRILIFMDTKKGCDQITRQ 332
IGS +L K NH I+Q +++ +K L+KLL + + + ++F + K +I+
Sbjct: 428 IGSSELPKLNH-IQQDAQLIAHHKKPRALIKLLSEPQFKEKKKTIVFFNKIKELKRISIM 486
Query: 333 LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG 392
L +I G+ Q R+ ++++F + +S ++ +TD+ RG+ + D+ +INYDFP
Sbjct: 487 LLKSNIKHDTIFGNIDQELREKLINKFSSSRSTLLLSTDIIGRGIHIDDIFNIINYDFPR 546
Query: 393 SLEDYVHXXXXXXXXXXXXX--XXXFFTAANARFAKELITILEEAGQKVS 440
SLE Y H F T +++ + + L++ Q +S
Sbjct: 547 SLEQYCHRVGRAGRSDKVVNPKAFSFLTNSDSYLVEPFVQFLKDQHQNIS 596
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 279 (103.3 bits), Expect = 5.1e-43, Sum P(2) = 5.1e-43
Identities = 73/226 (32%), Positives = 123/226 (54%)
Query: 87 ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETG 146
+ E D +P+ SF D+G + V++ + + GF +P+ IQ + L+GRD+I A++G
Sbjct: 23 LVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSG 82
Query: 147 SGKT--LAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKST 204
+GKT +A + +V +++ A L+L+PTRELA Q ++ G + I++
Sbjct: 83 TGKTSMIALSVCQVVDTSSREVQA-------LILSPTRELATQTEKTIQAIGLHANIQAH 135
Query: 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFE 264
GG G +R L+ GV +V TPGR+ DM++ + R + L+LDE+D ML GF+
Sbjct: 136 ACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFK 195
Query: 265 PQIKKILSQVIIGSPDLKAN--HAIRQHVDIVSESQKY-NKLVKLL 307
QI + + PDL+ A H +I+ + K+ + VK+L
Sbjct: 196 DQIYDVYRYL---PPDLQVCLVSATLPH-EILEMTSKFMTEPVKIL 237
Score = 212 (79.7 bits), Expect = 5.1e-43, Sum P(2) = 5.1e-43
Identities = 44/114 (38%), Positives = 71/114 (62%)
Query: 287 IRQH-VDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG 345
I+Q V + E K++ L L D + ++ +IF +TK+ D ++ ++R + S+HG
Sbjct: 248 IKQFFVAVEKEEWKFDTLCDLY-DTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHG 306
Query: 346 DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
D Q ERD +++EF++G S ++ TDV ARG+DV+ V VINYD P + E Y+H
Sbjct: 307 DMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH 360
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 309 (113.8 bits), Expect = 5.7e-43, Sum P(2) = 5.7e-43
Identities = 68/174 (39%), Positives = 99/174 (56%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F D+ ++ +++ GF PTPIQA P+ L+GRD +G A+TG+GKT A+ LP +
Sbjct: 28 FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK-IKSTCIYGGVPKGPQVRDL 219
+N + P +V+APTRELA+Q+ E G + K +K IYGG Q+R L
Sbjct: 88 LNLSQYK-----PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142
Query: 220 QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273
+ G IV+ TPGR+ D++ +L +LDEAD ML MGF + I+ Q
Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQ 196
Score = 178 (67.7 bits), Expect = 5.7e-43, Sum P(2) = 5.7e-43
Identities = 47/156 (30%), Positives = 83/156 (53%)
Query: 253 DEADRML-DMGFEPQIKKILSQVIIGSP---DLKANHA----IRQHVDIVSESQKYNKLV 304
+ A R+L P +K+I+ + + +P D+ ++ + Q +V +K +
Sbjct: 199 ESAQRVLFSATMPPMVKEIVER-FLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMA 257
Query: 305 KLLE-DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK 363
+LLE + D S ++F+ T++ +++ L G+ A ++HGD Q+ R+ + K G
Sbjct: 258 RLLETEETDAS--IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGV 315
Query: 364 SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
I+ ATDV ARGLDV + +V NYD P +E Y+H
Sbjct: 316 IDILVATDVVARGLDVPRITHVYNYDIPFDVESYIH 351
Score = 49 (22.3 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 320 MDTKKGCDQITRQLRMDG-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 372
M+ +K + R R DG PA G + Q DW + + G+ + D+
Sbjct: 467 MEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTYQLQVGRDQGVQVKDI 520
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 309 (113.8 bits), Expect = 5.7e-43, Sum P(2) = 5.7e-43
Identities = 68/174 (39%), Positives = 99/174 (56%)
Query: 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160
F D+ ++ +++ GF PTPIQA P+ L+GRD +G A+TG+GKT A+ LP +
Sbjct: 28 FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
Query: 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK-IKSTCIYGGVPKGPQVRDL 219
+N + P +V+APTRELA+Q+ E G + K +K IYGG Q+R L
Sbjct: 88 LNLSQYK-----PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142
Query: 220 QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273
+ G IV+ TPGR+ D++ +L +LDEAD ML MGF + I+ Q
Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQ 196
Score = 178 (67.7 bits), Expect = 5.7e-43, Sum P(2) = 5.7e-43
Identities = 47/156 (30%), Positives = 83/156 (53%)
Query: 253 DEADRML-DMGFEPQIKKILSQVIIGSP---DLKANHA----IRQHVDIVSESQKYNKLV 304
+ A R+L P +K+I+ + + +P D+ ++ + Q +V +K +
Sbjct: 199 ESAQRVLFSATMPPMVKEIVER-FLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMA 257
Query: 305 KLLE-DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK 363
+LLE + D S ++F+ T++ +++ L G+ A ++HGD Q+ R+ + K G
Sbjct: 258 RLLETEETDAS--IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGV 315
Query: 364 SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
I+ ATDV ARGLDV + +V NYD P +E Y+H
Sbjct: 316 IDILVATDVVARGLDVPRITHVYNYDIPFDVESYIH 351
Score = 49 (22.3 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 320 MDTKKGCDQITRQLRMDG-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 372
M+ +K + R R DG PA G + Q DW + + G+ + D+
Sbjct: 467 MEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTYQLQVGRDQGVQVKDI 520
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 321 (118.1 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 70/176 (39%), Positives = 101/176 (57%)
Query: 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157
V +F ++ + +++ + GF PT IQA P AL GRD++G A TG+GKT AYLLPA
Sbjct: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62
Query: 158 IVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217
+ H+ P G P +L+L PTRELA+Q+ + + + + I GGV
Sbjct: 63 LQHLLDFPRKKSGP-PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE 121
Query: 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273
+ +IV+AT GRL+ ++ N + R V L+LDEADRMLDMGF I+ I +
Sbjct: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGE 177
Score = 148 (57.2 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 31/97 (31%), Positives = 55/97 (56%)
Query: 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 362
LV LL+ + +R ++F+ ++ ++ LR G + G+ Q +R+ + G
Sbjct: 239 LVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 297
Query: 363 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
+ ++ ATDVAARG+D+ DV +V N+D P S + Y+H
Sbjct: 298 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH 334
>WB|WBGene00001599 [details] [associations]
symbol:glh-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 286 (105.7 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 66/192 (34%), Positives = 104/192 (54%)
Query: 87 ITVEGRDVP-KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAET 145
IT + + V K K+F + + + + ++ AG+ + TPIQ P+ +G D++ A+T
Sbjct: 539 ITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQT 598
Query: 146 GSGKTLAYLLPAIVH-VNAQPFLAPGDG---PIVLVLAPTRELAVQIQQESTKFGASSKI 201
GSGKT A+LLP + ++ G+G P ++L PTREL QI E KF + +
Sbjct: 599 GSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMM 658
Query: 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD- 260
+ +YGG+ G ++KG I++ T GR+ E L + + VLDEADRM+D
Sbjct: 659 EIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDA 718
Query: 261 MGFEPQIKKILS 272
MGF I I++
Sbjct: 719 MGFGTDIDTIVN 730
Score = 216 (81.1 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 52/171 (30%), Positives = 84/171 (49%)
Query: 283 ANHAIRQHVDIVSESQKYNKLVKLLEDIMDG-----------SRILIFMDTKKGCDQITR 331
AN + Q + S+K +KL+++L +D + ++F+ + D +
Sbjct: 776 ANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLAS 835
Query: 332 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 391
L PA++IHG + Q ER L +F+ G P++ AT VA RGLD+K V +VINYD P
Sbjct: 836 ILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMP 895
Query: 392 GSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPE 442
+++DY+H F + + EL+ +L +A Q V PE
Sbjct: 896 DNIDDYIHRIGRTGRVGNAGRATSFISE-DCNLLSELVRVLSDADQLV-PE 944
>UNIPROTKB|Q966L9 [details] [associations]
symbol:glh-2 "ATP-dependent RNA helicase glh-2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 286 (105.7 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 66/192 (34%), Positives = 104/192 (54%)
Query: 87 ITVEGRDVP-KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAET 145
IT + + V K K+F + + + + ++ AG+ + TPIQ P+ +G D++ A+T
Sbjct: 539 ITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQT 598
Query: 146 GSGKTLAYLLPAIVH-VNAQPFLAPGDG---PIVLVLAPTRELAVQIQQESTKFGASSKI 201
GSGKT A+LLP + ++ G+G P ++L PTREL QI E KF + +
Sbjct: 599 GSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMM 658
Query: 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD- 260
+ +YGG+ G ++KG I++ T GR+ E L + + VLDEADRM+D
Sbjct: 659 EIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDA 718
Query: 261 MGFEPQIKKILS 272
MGF I I++
Sbjct: 719 MGFGTDIDTIVN 730
Score = 216 (81.1 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 52/171 (30%), Positives = 84/171 (49%)
Query: 283 ANHAIRQHVDIVSESQKYNKLVKLLEDIMDG-----------SRILIFMDTKKGCDQITR 331
AN + Q + S+K +KL+++L +D + ++F+ + D +
Sbjct: 776 ANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLAS 835
Query: 332 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 391
L PA++IHG + Q ER L +F+ G P++ AT VA RGLD+K V +VINYD P
Sbjct: 836 ILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMP 895
Query: 392 GSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPE 442
+++DY+H F + + EL+ +L +A Q V PE
Sbjct: 896 DNIDDYIHRIGRTGRVGNAGRATSFISE-DCNLLSELVRVLSDADQLV-PE 944
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 296 (109.3 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 71/174 (40%), Positives = 96/174 (55%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
SF D+G ++ + + + PT IQ+ P LKG D IG A+TGSGKT+A+ P +
Sbjct: 2 SFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLT 61
Query: 160 HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219
+ PF G L+L PTRELA+QI ++ GA+ IK + GG Q L
Sbjct: 62 QWSEDPF-----GIFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLAL 116
Query: 220 QKGVEIVIATPGRLIDML----ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKK 269
Q+ VIATPGRL D + E + LRRV YLVLDEADR+L F +++
Sbjct: 117 QRKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQR 170
Score = 172 (65.6 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 37/102 (36%), Positives = 58/102 (56%)
Query: 298 QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLS 357
+ Y + LE D + + IF++ + + R LR + S+H + Q+ER L
Sbjct: 239 EAYLNSILHLEQFKDSTAV-IFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNSLH 297
Query: 358 EFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 399
FKAG + I+ ATDVA+RGLD+ V+ VIN+D P +D++H
Sbjct: 298 RFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIH 339
Score = 44 (20.5 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 293 IVSESQKYNKLVKLLEDIMDGSRI 316
I S ++ NK ++LLED+ D + I
Sbjct: 365 IQSIEERINKKMELLEDVNDDNVI 388
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 97/188 (51%), Positives = 126/188 (67%)
Query: 94 VPKPVKSFRDV-GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152
+P PV SF G +M EI K GF +P+PIQ+Q WP+ L G+D IG+++TGSGKTLA
Sbjct: 78 IPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLA 137
Query: 153 YLLPAIVHVNAQ-PFLAPGD-----GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCI 206
+LLPA++H++AQ D P VLVL+PTRELA QI+ E K+ + KS C+
Sbjct: 138 FLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNG-YKSVCL 196
Query: 207 YGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQ 266
YGG + QV + GVEIVIATPGRL D+ +L VTY+VLDEADRMLDMGFE
Sbjct: 197 YGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVA 256
Query: 267 IKKILSQV 274
I++IL ++
Sbjct: 257 IRRILFEI 264
Score = 222 (83.2 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 58/231 (25%), Positives = 117/231 (50%)
Query: 225 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQ-IKKILSQ-------VII 276
+V+ R++DM +RR+ + + + L P+ ++K+ + +
Sbjct: 240 VVLDEADRMLDM--GFEVAIRRILFEIRPDRLVALTSATWPEGVRKLTDKYTKEAVMAVN 297
Query: 277 GSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGS--RILIFMDTKKGCDQITRQ 332
GS DL + ++ Q + V ++ ++ +++ + G +++IF+ +K D ++
Sbjct: 298 GSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSD 357
Query: 333 LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG 392
M G + +HG +SQ++R+ L+ ++G+ I+ ATD+A+RG+DV D+ +V+NYDFP
Sbjct: 358 FCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPM 417
Query: 393 SLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQKVSPEL 443
+E+YVH F + + LI ILE++ Q+V +L
Sbjct: 418 DIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGLIQILEKSEQEVPDQL 468
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 313 (115.2 bits), Expect = 6.8e-42, Sum P(2) = 6.8e-42
Identities = 78/218 (35%), Positives = 124/218 (56%)
Query: 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152
D K SF+ + +++ ++ GF +PTPIQ++ P+AL G+D++G A TGSGKT A
Sbjct: 249 DTNKGNASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAA 308
Query: 153 YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPK 212
+++P + + +P P V++LAPTRELA+Q +TK + + IK GG+
Sbjct: 309 FVVPILERLLYRPKKVPTSR--VVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSL 366
Query: 213 GPQVRDLQKGVEIVIATPGRLID-MLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271
Q +L+ +++IATPGR ID M S + + V LVLDEADRML+ GF ++ +IL
Sbjct: 367 KVQESELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEIL 426
Query: 272 SQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED 309
+ + + + + VD + NK V+L+ D
Sbjct: 427 TTLPKSRQTMLFSATMTSSVDNLIRVG-LNKPVRLMVD 463
Score = 167 (63.8 bits), Expect = 6.8e-42, Sum P(2) = 6.8e-42
Identities = 43/148 (29%), Positives = 66/148 (44%)
Query: 296 ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWV 355
E ++ LV L +++ R++IF KK + G +HG SQ +R
Sbjct: 484 EEKRMGYLVYLCKNLYT-ERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQS 542
Query: 356 LSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXX 415
+ F+ GK + ATD+A+RGLD+K V VINY+ P SLE YVH
Sbjct: 543 VEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAIT 602
Query: 416 FFTAANARFAKELITILEEAGQKVSPEL 443
+ + K + + G K+S +
Sbjct: 603 LAAEPDRKVVKAAVKAGKAQGAKISSRI 630
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 297 (109.6 bits), Expect = 7.1e-42, Sum P(2) = 7.1e-42
Identities = 69/190 (36%), Positives = 106/190 (55%)
Query: 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159
+F +G D +++ + + G P IQ P+AL G D+IG A TG GKT A+ +P +
Sbjct: 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70
Query: 160 HVNAQPFLAPGDG-PIVLVLAPTRELAVQIQQESTKFG-----------ASS---KIKST 204
+ + P G P LV+ PTREL +Q+ + G A++ ++
Sbjct: 71 RITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVV 130
Query: 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFE 264
IYGG P PQ+ L+ G ++V+ TPGRL+D+ + + L ++ LVLDEAD MLD+GF
Sbjct: 131 SIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFL 190
Query: 265 PQIKKILSQV 274
P I++IL Q+
Sbjct: 191 PDIERILRQI 200
Score = 174 (66.3 bits), Expect = 7.1e-42, Sum P(2) = 7.1e-42
Identities = 42/123 (34%), Positives = 63/123 (51%)
Query: 278 SPDLKANH-AIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD 336
+P A H A Q V K + ++L+ D +IF TK+ ++ +L
Sbjct: 235 APHSSAVHDATEQFVYRAHALDKVELVSRVLQ-ARDRGATMIFTRTKRTAQKVADELTER 293
Query: 337 GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLED 396
G+ ++HGD Q R+ L F+ G ++ ATDVAARG+D+ DV +VINY P +
Sbjct: 294 GFAVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKM 353
Query: 397 YVH 399
YVH
Sbjct: 354 YVH 356
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 303 (111.7 bits), Expect = 2.4e-41, Sum P(2) = 2.4e-41
Identities = 73/186 (39%), Positives = 102/186 (54%)
Query: 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 158
KSF D+G +++ + +EPT IQ L+GR+ IG A+TGSGKT A+ LP I
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 159 VHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218
+ P G L+L PTRELA+QI ++ GA+ +K I GG+ Q D
Sbjct: 67 EKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSID 121
Query: 219 LQKGVEIVIATPGRLIDMLESHN----TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274
L K +V+ATPGRL D++ S+ LRR+ +LV+DEADR+L F + S V
Sbjct: 122 LSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFS-V 180
Query: 275 IIGSPD 280
+ S D
Sbjct: 181 LPASED 186
Score = 154 (59.3 bits), Expect = 2.4e-41, Sum P(2) = 2.4e-41
Identities = 44/148 (29%), Positives = 75/148 (50%)
Query: 256 DRMLDMGFEPQI--KKILSQVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDG 313
D + + ++PQ K L + + ++ ++Q VS + LV LL I +
Sbjct: 198 DAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYLVHLLT-IPEN 256
Query: 314 SR--ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 371
++ +IF++ + + I LR+ +H + Q ER L F+A + I+ ATD
Sbjct: 257 AKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATD 316
Query: 372 VAARGLDVKDVKYVINYDFPGSLEDYVH 399
VA+RGLD+ V+ VIN+D P +DY+H
Sbjct: 317 VASRGLDIPSVQLVINFDLPRDPDDYIH 344
WARNING: HSPs involving 708 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 473 392 0.00095 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 958
No. of states in DFA: 605 (64 KB)
Total size of DFA: 221 KB (2122 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.20u 0.14s 32.34t Elapsed: 00:00:01
Total cpu time: 32.25u 0.14s 32.39t Elapsed: 00:00:02
Start: Tue May 21 05:38:54 2013 End: Tue May 21 05:38:56 2013
WARNINGS ISSUED: 2