Query 012013
Match_columns 473
No_of_seqs 379 out of 3206
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:41:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 8E-79 1.7E-83 595.8 35.3 399 54-452 16-480 (519)
2 PTZ00110 helicase; Provisional 100.0 1.1E-76 2.4E-81 611.0 50.9 406 46-451 75-515 (545)
3 KOG0336 ATP-dependent RNA heli 100.0 1.1E-73 2.3E-78 528.0 28.1 397 55-452 168-604 (629)
4 KOG0339 ATP-dependent RNA heli 100.0 6.2E-72 1.3E-76 528.6 32.3 398 51-448 175-603 (731)
5 KOG0333 U5 snRNP-like RNA heli 100.0 6.3E-69 1.4E-73 510.7 29.7 380 68-449 214-654 (673)
6 PLN00206 DEAD-box ATP-dependen 100.0 2.1E-66 4.6E-71 533.3 44.1 395 53-447 74-502 (518)
7 KOG0335 ATP-dependent RNA heli 100.0 7.9E-66 1.7E-70 495.7 29.0 374 80-453 53-477 (482)
8 KOG0341 DEAD-box protein abstr 100.0 1.1E-66 2.3E-71 478.5 20.3 384 63-449 134-558 (610)
9 KOG0330 ATP-dependent RNA heli 100.0 3E-65 6.6E-70 470.0 28.6 337 96-438 58-425 (476)
10 KOG0334 RNA helicase [RNA proc 100.0 1.4E-64 3.1E-69 518.9 30.6 397 51-448 316-748 (997)
11 PRK10590 ATP-dependent RNA hel 100.0 9E-61 2E-65 485.9 40.0 335 100-435 2-367 (456)
12 COG0513 SrmB Superfamily II DN 100.0 7.5E-61 1.6E-65 488.9 37.0 340 99-442 29-406 (513)
13 PRK04837 ATP-dependent RNA hel 100.0 8.8E-59 1.9E-63 468.3 38.7 338 97-435 6-377 (423)
14 PRK04537 ATP-dependent RNA hel 100.0 3.1E-58 6.7E-63 475.6 40.5 336 98-434 8-378 (572)
15 KOG0342 ATP-dependent RNA heli 100.0 1.2E-58 2.5E-63 438.7 27.8 334 97-431 80-448 (543)
16 KOG0338 ATP-dependent RNA heli 100.0 1E-58 2.2E-63 439.5 25.6 332 98-432 180-545 (691)
17 KOG0340 ATP-dependent RNA heli 100.0 4.2E-58 9.2E-63 418.1 27.8 339 97-440 5-381 (442)
18 KOG0328 Predicted ATP-dependen 100.0 8.2E-58 1.8E-62 404.0 26.3 346 95-446 23-399 (400)
19 PRK11776 ATP-dependent RNA hel 100.0 2.8E-56 6.1E-61 454.9 37.4 330 99-434 4-363 (460)
20 KOG0345 ATP-dependent RNA heli 100.0 1.2E-56 2.6E-61 422.2 31.8 325 99-424 4-368 (567)
21 PRK11192 ATP-dependent RNA hel 100.0 1.4E-55 3E-60 447.1 39.0 334 100-435 2-367 (434)
22 PRK11634 ATP-dependent RNA hel 100.0 8.3E-56 1.8E-60 459.9 37.8 327 98-430 5-362 (629)
23 PRK01297 ATP-dependent RNA hel 100.0 1.7E-54 3.6E-59 443.0 40.3 348 97-445 85-469 (475)
24 KOG0348 ATP-dependent RNA heli 100.0 3.7E-55 8.1E-60 417.4 32.8 336 96-431 133-565 (708)
25 KOG0343 RNA Helicase [RNA proc 100.0 1.7E-55 3.7E-60 421.1 29.4 346 73-427 48-430 (758)
26 KOG0326 ATP-dependent RNA heli 100.0 2.9E-55 6.2E-60 394.0 17.4 340 98-443 84-452 (459)
27 KOG0346 RNA helicase [RNA proc 100.0 2.8E-53 6E-58 396.1 26.1 337 99-435 19-425 (569)
28 PTZ00424 helicase 45; Provisio 100.0 5.8E-52 1.2E-56 417.5 36.3 338 97-440 26-394 (401)
29 KOG0347 RNA helicase [RNA proc 100.0 2.6E-54 5.7E-59 412.9 16.4 343 95-437 177-587 (731)
30 KOG0344 ATP-dependent RNA heli 100.0 9.8E-52 2.1E-56 400.6 26.8 367 81-448 114-523 (593)
31 KOG0332 ATP-dependent RNA heli 100.0 5.9E-49 1.3E-53 360.4 27.2 342 96-447 87-472 (477)
32 TIGR03817 DECH_helic helicase/ 100.0 1.1E-47 2.4E-52 406.6 34.3 303 105-419 20-385 (742)
33 KOG0350 DEAD-box ATP-dependent 100.0 3E-48 6.5E-53 367.8 25.4 322 108-434 146-554 (620)
34 KOG0337 ATP-dependent RNA heli 100.0 6.5E-49 1.4E-53 365.2 16.7 333 98-434 20-382 (529)
35 PLN03137 ATP-dependent DNA hel 100.0 1.1E-46 2.4E-51 396.8 33.2 316 100-430 436-797 (1195)
36 TIGR00614 recQ_fam ATP-depende 100.0 1.5E-46 3.3E-51 382.8 30.9 298 116-431 6-344 (470)
37 KOG0327 Translation initiation 100.0 2.8E-47 6.1E-52 352.3 21.6 339 98-444 25-394 (397)
38 PRK11057 ATP-dependent DNA hel 100.0 8.5E-45 1.8E-49 379.4 32.3 307 107-429 10-352 (607)
39 PRK02362 ski2-like helicase; P 100.0 2.3E-44 5E-49 385.3 31.0 309 100-420 2-397 (737)
40 KOG4284 DEAD box protein [Tran 100.0 4E-45 8.7E-50 355.3 22.6 325 91-422 17-381 (980)
41 TIGR01389 recQ ATP-dependent D 100.0 4.4E-44 9.5E-49 375.1 31.6 297 117-429 9-340 (591)
42 PRK13767 ATP-dependent helicas 100.0 5.2E-43 1.1E-47 378.2 35.3 313 106-419 18-397 (876)
43 PRK00254 ski2-like helicase; P 100.0 2E-41 4.3E-46 361.8 33.8 311 100-421 2-389 (720)
44 PRK01172 ski2-like helicase; P 100.0 1.4E-40 2.9E-45 353.9 30.8 307 100-420 2-378 (674)
45 COG1201 Lhr Lhr-like helicases 100.0 3.2E-40 7E-45 341.5 30.2 313 106-419 8-361 (814)
46 TIGR00643 recG ATP-dependent D 100.0 1.5E-39 3.3E-44 341.3 33.9 322 109-448 224-594 (630)
47 PRK10917 ATP-dependent DNA hel 100.0 1.5E-39 3.2E-44 343.5 33.8 313 108-437 248-606 (681)
48 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.1E-39 2.4E-44 339.4 31.2 284 117-419 12-390 (844)
49 TIGR00580 mfd transcription-re 100.0 2.9E-39 6.3E-44 345.6 35.2 312 106-435 436-787 (926)
50 COG1111 MPH1 ERCC4-like helica 100.0 2.4E-39 5.2E-44 309.9 28.6 292 119-420 13-481 (542)
51 COG0514 RecQ Superfamily II DN 100.0 9.3E-40 2E-44 326.7 25.7 301 116-432 12-349 (590)
52 PRK10689 transcription-repair 100.0 3.8E-38 8.3E-43 343.9 34.0 323 110-450 590-954 (1147)
53 KOG0329 ATP-dependent RNA heli 100.0 3.7E-39 8E-44 281.8 14.8 304 98-442 41-378 (387)
54 PRK12898 secA preprotein trans 100.0 4.1E-37 8.9E-42 313.7 32.1 289 120-423 102-589 (656)
55 PRK09751 putative ATP-dependen 100.0 1.5E-37 3.2E-42 340.9 29.6 273 141-414 1-379 (1490)
56 PRK09200 preprotein translocas 100.0 5.2E-37 1.1E-41 319.4 30.4 291 118-422 76-543 (790)
57 PHA02558 uvsW UvsW helicase; P 100.0 5.4E-37 1.2E-41 314.3 29.6 281 119-416 112-449 (501)
58 TIGR03714 secA2 accessory Sec 100.0 1.7E-36 3.7E-41 312.6 30.0 292 121-423 68-540 (762)
59 PRK14701 reverse gyrase; Provi 100.0 1E-36 2.2E-41 339.9 26.4 302 109-429 67-465 (1638)
60 PRK09401 reverse gyrase; Revie 100.0 5.8E-36 1.3E-40 327.5 30.9 277 111-407 70-431 (1176)
61 PHA02653 RNA helicase NPH-II; 100.0 5.3E-36 1.1E-40 310.4 27.8 283 124-422 167-516 (675)
62 TIGR00963 secA preprotein tran 100.0 1.4E-35 3.1E-40 303.9 30.4 291 120-424 55-521 (745)
63 TIGR01970 DEAH_box_HrpB ATP-de 100.0 8.2E-36 1.8E-40 316.0 29.6 280 125-422 6-338 (819)
64 COG1202 Superfamily II helicas 100.0 4.3E-36 9.4E-41 289.5 21.1 314 99-420 194-553 (830)
65 KOG0349 Putative DEAD-box RNA 100.0 5.8E-36 1.3E-40 279.5 19.8 290 172-461 286-688 (725)
66 PRK11664 ATP-dependent RNA hel 100.0 4.1E-35 8.9E-40 311.5 27.3 281 126-422 10-341 (812)
67 COG1204 Superfamily II helicas 100.0 4.9E-35 1.1E-39 307.1 27.4 306 103-419 13-407 (766)
68 PRK13766 Hef nuclease; Provisi 100.0 2.9E-34 6.2E-39 311.0 34.3 293 119-421 13-480 (773)
69 KOG0354 DEAD-box like helicase 100.0 1.2E-34 2.5E-39 293.3 28.4 291 118-419 59-528 (746)
70 TIGR01587 cas3_core CRISPR-ass 100.0 2.5E-34 5.5E-39 284.8 26.3 271 138-421 1-337 (358)
71 TIGR00603 rad25 DNA repair hel 100.0 3.5E-34 7.6E-39 295.5 25.1 295 120-435 254-624 (732)
72 TIGR01054 rgy reverse gyrase. 100.0 1.1E-33 2.5E-38 310.0 29.5 266 108-392 65-409 (1171)
73 KOG0351 ATP-dependent DNA heli 100.0 9.4E-34 2E-38 299.3 24.3 303 113-430 256-602 (941)
74 KOG0352 ATP-dependent DNA heli 100.0 9.5E-33 2.1E-37 257.7 19.3 302 111-428 8-370 (641)
75 COG1205 Distinct helicase fami 100.0 6.1E-32 1.3E-36 287.7 27.0 306 106-418 55-420 (851)
76 PRK04914 ATP-dependent helicas 100.0 5.5E-31 1.2E-35 280.9 28.7 136 299-435 480-618 (956)
77 TIGR03158 cas3_cyano CRISPR-as 100.0 8.9E-31 1.9E-35 257.1 25.5 260 125-405 1-357 (357)
78 PRK11131 ATP-dependent RNA hel 100.0 7.2E-31 1.6E-35 283.7 26.6 277 125-422 78-413 (1294)
79 COG1061 SSL2 DNA or RNA helica 100.0 1.7E-30 3.6E-35 261.3 24.3 268 120-407 35-376 (442)
80 PRK13104 secA preprotein trans 100.0 1.2E-29 2.5E-34 263.9 30.2 291 122-424 81-591 (896)
81 KOG0952 DNA/RNA helicase MER3/ 100.0 1.7E-30 3.7E-35 266.1 21.5 303 117-424 106-495 (1230)
82 KOG0353 ATP-dependent DNA heli 100.0 3.1E-30 6.7E-35 237.7 20.1 304 103-422 75-469 (695)
83 COG1200 RecG RecG-like helicas 100.0 1.8E-28 3.9E-33 245.1 31.1 318 106-437 247-608 (677)
84 PRK12899 secA preprotein trans 100.0 3.4E-28 7.5E-33 252.5 31.5 181 67-259 31-228 (970)
85 PRK12904 preprotein translocas 100.0 1.7E-28 3.7E-33 255.1 28.7 289 121-423 81-576 (830)
86 TIGR01967 DEAH_box_HrpA ATP-de 100.0 7.3E-29 1.6E-33 269.2 25.8 280 127-422 73-406 (1283)
87 PRK05580 primosome assembly pr 100.0 7E-28 1.5E-32 253.8 32.3 283 120-420 143-549 (679)
88 PRK12906 secA preprotein trans 100.0 1.7E-28 3.8E-33 254.0 25.3 290 120-423 79-556 (796)
89 PRK09694 helicase Cas3; Provis 100.0 1.1E-27 2.3E-32 254.4 31.4 321 119-449 284-726 (878)
90 PLN03142 Probable chromatin-re 100.0 2.3E-27 4.9E-32 254.2 26.3 288 121-420 169-597 (1033)
91 KOG0948 Nuclear exosomal RNA h 100.0 1.1E-28 2.4E-33 244.5 14.4 286 119-426 127-546 (1041)
92 COG1197 Mfd Transcription-repa 100.0 5.6E-26 1.2E-30 239.3 32.3 302 105-420 578-913 (1139)
93 PRK13107 preprotein translocas 100.0 3.1E-26 6.7E-31 237.8 27.1 288 121-422 82-593 (908)
94 KOG0951 RNA helicase BRR2, DEA 99.9 1.6E-26 3.6E-31 239.8 23.7 313 105-424 295-706 (1674)
95 KOG0947 Cytoplasmic exosomal R 99.9 6.7E-27 1.4E-31 237.3 20.2 283 119-420 295-723 (1248)
96 TIGR00595 priA primosomal prot 99.9 2.7E-26 5.9E-31 233.6 24.0 264 140-421 1-383 (505)
97 PRK11448 hsdR type I restricti 99.9 7.3E-26 1.6E-30 247.0 25.3 280 120-409 412-802 (1123)
98 cd00268 DEADc DEAD-box helicas 99.9 1.2E-25 2.6E-30 204.6 19.7 170 101-273 1-170 (203)
99 COG4098 comFA Superfamily II D 99.9 6.1E-24 1.3E-28 194.3 27.5 278 121-424 97-420 (441)
100 COG4581 Superfamily II RNA hel 99.9 9.9E-25 2.1E-29 229.8 22.2 285 119-419 117-536 (1041)
101 KOG0385 Chromatin remodeling c 99.9 2.6E-24 5.6E-29 214.5 22.0 299 121-429 167-606 (971)
102 KOG0950 DNA polymerase theta/e 99.9 5.5E-24 1.2E-28 217.7 23.6 314 106-430 208-621 (1008)
103 COG1643 HrpA HrpA-like helicas 99.9 2.2E-23 4.8E-28 218.4 21.7 284 124-422 53-389 (845)
104 PRK12900 secA preprotein trans 99.9 1.3E-22 2.9E-27 211.6 23.4 138 297-436 581-731 (1025)
105 KOG0922 DEAH-box RNA helicase 99.9 6.1E-23 1.3E-27 203.6 19.6 282 124-422 54-392 (674)
106 KOG0920 ATP-dependent RNA heli 99.9 2.3E-22 4.9E-27 210.0 21.8 288 122-422 174-546 (924)
107 PF00270 DEAD: DEAD/DEAH box h 99.9 1.1E-22 2.3E-27 179.5 16.5 146 123-274 1-147 (169)
108 KOG0384 Chromodomain-helicase 99.9 3.9E-23 8.4E-28 215.4 14.6 300 120-432 369-821 (1373)
109 KOG0387 Transcription-coupled 99.9 1E-21 2.2E-26 197.1 22.4 288 121-418 205-654 (923)
110 COG1110 Reverse gyrase [DNA re 99.9 1.2E-20 2.6E-25 194.3 29.3 265 110-391 71-416 (1187)
111 TIGR00631 uvrb excinuclease AB 99.9 8.7E-21 1.9E-25 197.9 28.7 133 298-431 426-564 (655)
112 KOG0923 mRNA splicing factor A 99.9 2E-22 4.3E-27 198.1 12.9 287 119-419 263-605 (902)
113 PRK12326 preprotein translocas 99.9 1.7E-20 3.7E-25 190.9 26.2 288 120-422 77-549 (764)
114 COG4096 HsdR Type I site-speci 99.9 1.9E-20 4E-25 190.2 24.1 270 121-407 165-525 (875)
115 COG1203 CRISPR-associated heli 99.9 9.3E-21 2E-25 201.9 23.0 295 122-424 196-554 (733)
116 KOG0949 Predicted helicase, DE 99.9 4.9E-21 1.1E-25 195.3 19.3 132 121-260 511-646 (1330)
117 KOG0389 SNF2 family DNA-depend 99.9 5.8E-21 1.3E-25 191.4 19.0 290 121-419 399-885 (941)
118 PRK13103 secA preprotein trans 99.9 6.6E-20 1.4E-24 191.0 25.1 288 121-423 82-594 (913)
119 KOG0390 DNA repair protein, SN 99.9 7.9E-20 1.7E-24 188.0 24.9 295 121-419 238-704 (776)
120 TIGR01407 dinG_rel DnaQ family 99.9 1.5E-19 3.2E-24 196.6 28.2 130 302-434 661-830 (850)
121 KOG0924 mRNA splicing factor A 99.9 1.8E-20 4E-25 184.8 18.2 282 124-420 359-697 (1042)
122 PRK05298 excinuclease ABC subu 99.9 3.3E-19 7.2E-24 187.5 28.7 144 299-443 431-589 (652)
123 KOG1123 RNA polymerase II tran 99.9 1.7E-20 3.7E-25 179.3 16.5 263 120-408 301-635 (776)
124 TIGR00348 hsdR type I site-spe 99.8 1.4E-19 2.9E-24 191.1 24.0 273 122-407 239-634 (667)
125 KOG0392 SNF2 family DNA-depend 99.8 1.1E-19 2.3E-24 189.4 20.9 294 121-419 975-1451(1549)
126 KOG1002 Nucleotide excision re 99.8 6.5E-19 1.4E-23 168.2 21.3 141 297-439 619-766 (791)
127 COG0556 UvrB Helicase subunit 99.8 1.9E-18 4.1E-23 167.2 22.9 124 300-424 432-561 (663)
128 KOG0926 DEAH-box RNA helicase 99.8 6.8E-19 1.5E-23 176.6 19.9 279 127-420 262-704 (1172)
129 KOG1000 Chromatin remodeling p 99.8 1.3E-18 2.9E-23 166.3 20.8 286 119-420 196-601 (689)
130 COG1198 PriA Primosomal protei 99.8 4.5E-18 9.8E-23 176.2 26.0 285 120-422 197-605 (730)
131 PRK12903 secA preprotein trans 99.8 6.9E-18 1.5E-22 174.3 26.8 288 121-423 78-542 (925)
132 cd00079 HELICc Helicase superf 99.8 6.9E-19 1.5E-23 148.0 14.7 120 297-416 11-131 (131)
133 KOG0925 mRNA splicing factor A 99.8 2.8E-18 6.1E-23 163.7 18.0 305 98-420 24-387 (699)
134 KOG0391 SNF2 family DNA-depend 99.8 1.5E-17 3.2E-22 172.1 21.0 131 296-426 1258-1391(1958)
135 CHL00122 secA preprotein trans 99.8 3.2E-17 6.9E-22 170.4 22.7 127 121-259 76-209 (870)
136 KOG0953 Mitochondrial RNA heli 99.8 3.5E-18 7.6E-23 165.7 14.3 254 138-420 193-477 (700)
137 PRK07246 bifunctional ATP-depe 99.8 2.4E-16 5.3E-21 169.3 27.7 130 302-434 635-799 (820)
138 PF00271 Helicase_C: Helicase 99.8 3.2E-18 6.9E-23 130.2 9.1 78 331-408 1-78 (78)
139 COG4889 Predicted helicase [Ge 99.8 4.8E-18 1E-22 171.8 11.7 327 99-437 140-618 (1518)
140 KOG0388 SNF2 family DNA-depend 99.7 3.6E-17 7.7E-22 162.2 16.8 127 295-421 1025-1153(1185)
141 smart00487 DEXDc DEAD-like hel 99.7 6.9E-17 1.5E-21 145.7 16.6 151 117-273 4-156 (201)
142 KOG4439 RNA polymerase II tran 99.7 3.1E-16 6.7E-21 155.9 20.9 123 296-418 727-854 (901)
143 PRK12902 secA preprotein trans 99.7 1.4E-15 3E-20 158.0 26.1 127 121-259 85-218 (939)
144 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.3E-14 2.8E-19 149.6 30.8 117 313-431 470-628 (636)
145 KOG4150 Predicted ATP-dependen 99.7 1.2E-16 2.6E-21 155.2 14.1 297 116-418 281-638 (1034)
146 KOG0386 Chromatin remodeling c 99.7 6E-17 1.3E-21 166.6 12.2 293 121-426 394-842 (1157)
147 PRK08074 bifunctional ATP-depe 99.7 6.4E-15 1.4E-19 161.2 27.9 134 301-434 738-909 (928)
148 PRK12901 secA preprotein trans 99.6 2E-14 4.4E-19 150.9 20.7 124 296-422 610-743 (1112)
149 smart00490 HELICc helicase sup 99.6 1.5E-15 3.2E-20 116.4 9.1 81 328-408 2-82 (82)
150 KOG0951 RNA helicase BRR2, DEA 99.6 1.1E-13 2.3E-18 145.6 20.2 287 121-428 1143-1502(1674)
151 cd00046 DEXDc DEAD-like helica 99.6 3.9E-14 8.5E-19 120.1 13.6 122 137-265 1-122 (144)
152 COG0553 HepA Superfamily II DN 99.6 3E-13 6.4E-18 149.9 24.4 138 298-435 692-835 (866)
153 COG1199 DinG Rad3-related DNA 99.6 6.6E-13 1.4E-17 141.9 25.4 120 313-435 479-634 (654)
154 PRK11747 dinG ATP-dependent DN 99.5 5.8E-12 1.3E-16 134.0 29.3 117 313-433 534-689 (697)
155 KOG1015 Transcription regulato 99.5 1.7E-13 3.7E-18 140.2 15.9 125 298-422 1126-1277(1567)
156 PF04851 ResIII: Type III rest 99.5 9.9E-14 2.1E-18 123.7 10.7 131 121-262 3-162 (184)
157 TIGR00604 rad3 DNA repair heli 99.4 3E-11 6.5E-16 129.5 25.5 73 118-195 7-83 (705)
158 PF02399 Herpes_ori_bp: Origin 99.4 6.3E-11 1.4E-15 122.6 21.1 259 138-420 51-388 (824)
159 PF06862 DUF1253: Protein of u 99.4 4.6E-10 1E-14 110.6 26.1 259 171-430 36-425 (442)
160 PRK14873 primosome assembly pr 99.4 8E-11 1.7E-15 123.3 21.5 99 142-257 166-268 (665)
161 TIGR02562 cas3_yersinia CRISPR 99.3 1.8E-10 3.8E-15 122.4 21.6 91 317-410 760-882 (1110)
162 COG0653 SecA Preprotein transl 99.3 7E-11 1.5E-15 123.0 17.5 289 121-422 78-547 (822)
163 KOG0921 Dosage compensation co 99.3 4.2E-11 9.1E-16 122.6 14.2 281 127-419 384-773 (1282)
164 KOG2340 Uncharacterized conser 99.2 1.2E-09 2.5E-14 106.5 19.4 313 118-431 213-679 (698)
165 smart00489 DEXDc3 DEAD-like he 99.2 1.3E-10 2.9E-15 110.7 13.0 73 121-195 8-84 (289)
166 smart00488 DEXDc2 DEAD-like he 99.2 1.3E-10 2.9E-15 110.7 13.0 73 121-195 8-84 (289)
167 PF00176 SNF2_N: SNF2 family N 99.2 1.8E-10 4E-15 111.1 11.6 131 125-261 1-149 (299)
168 COG0610 Type I site-specific r 99.1 2E-09 4.4E-14 117.7 17.4 126 137-272 274-402 (962)
169 KOG1001 Helicase-like transcri 99.0 1.1E-09 2.5E-14 114.0 11.5 119 298-416 522-644 (674)
170 PF07517 SecA_DEAD: SecA DEAD- 99.0 3.4E-09 7.4E-14 98.4 13.4 130 118-259 74-210 (266)
171 KOG1016 Predicted DNA helicase 99.0 2.8E-09 6E-14 107.8 13.3 119 313-431 719-858 (1387)
172 PF07652 Flavi_DEAD: Flaviviru 99.0 9E-10 2E-14 90.9 7.2 104 136-258 4-107 (148)
173 TIGR00596 rad1 DNA repair prot 98.8 6.3E-08 1.4E-12 103.4 12.2 38 221-258 6-43 (814)
174 PF13086 AAA_11: AAA domain; P 98.6 1.7E-07 3.7E-12 86.8 9.2 73 121-194 1-75 (236)
175 PF12340 DUF3638: Protein of u 98.5 1.7E-06 3.6E-11 77.9 13.1 129 99-237 3-145 (229)
176 KOG0952 DNA/RNA helicase MER3/ 98.5 3.5E-08 7.5E-13 103.6 2.3 131 121-260 927-1060(1230)
177 KOG1133 Helicase of the DEAD s 98.5 0.0003 6.5E-09 71.8 27.8 123 314-449 630-799 (821)
178 PF13307 Helicase_C_2: Helicas 98.3 2E-06 4.4E-11 75.2 8.6 105 313-419 9-149 (167)
179 COG3587 Restriction endonuclea 98.2 2.1E-05 4.6E-10 81.7 14.4 74 362-435 482-568 (985)
180 KOG1803 DNA helicase [Replicat 98.2 4.3E-06 9.3E-11 83.8 9.0 65 121-193 185-250 (649)
181 PF13604 AAA_30: AAA domain; P 98.2 1.8E-06 4E-11 77.5 5.1 63 121-191 1-65 (196)
182 KOG1802 RNA helicase nonsense 98.1 1.5E-05 3.1E-10 80.6 9.7 83 113-206 402-484 (935)
183 PF02562 PhoH: PhoH-like prote 98.1 1E-05 2.2E-10 72.3 7.8 59 120-184 3-61 (205)
184 PF09848 DUF2075: Uncharacteri 98.1 1.4E-05 3E-10 78.9 9.0 108 138-273 3-117 (352)
185 PRK15483 type III restriction- 98.1 2.2E-05 4.7E-10 84.6 10.8 73 363-435 501-583 (986)
186 TIGR00376 DNA helicase, putati 98.1 2.9E-05 6.2E-10 82.1 11.6 68 120-195 156-224 (637)
187 PF13872 AAA_34: P-loop contai 98.0 0.00012 2.7E-09 68.5 12.2 143 102-262 24-188 (303)
188 KOG1132 Helicase of the DEAD s 97.9 7.6E-05 1.7E-09 78.0 11.3 79 120-198 20-136 (945)
189 PF13245 AAA_19: Part of AAA d 97.9 7.8E-05 1.7E-09 55.6 7.7 60 129-192 2-62 (76)
190 KOG1805 DNA replication helica 97.7 0.00013 2.8E-09 77.0 9.4 138 102-259 654-809 (1100)
191 TIGR01447 recD exodeoxyribonuc 97.7 0.00024 5.1E-09 74.3 10.7 70 123-195 147-216 (586)
192 PRK10536 hypothetical protein; 97.7 0.00041 8.9E-09 63.9 10.9 60 118-183 56-115 (262)
193 PRK10875 recD exonuclease V su 97.7 0.00023 4.9E-09 74.6 10.4 69 123-195 154-222 (615)
194 TIGR01448 recD_rel helicase, p 97.6 0.00025 5.4E-09 76.3 10.2 66 119-190 321-386 (720)
195 PRK13889 conjugal transfer rel 97.6 0.0012 2.5E-08 72.7 14.6 61 120-188 345-406 (988)
196 PRK13826 Dtr system oriT relax 97.5 0.0043 9.3E-08 68.8 17.6 61 120-188 380-441 (1102)
197 TIGR02768 TraA_Ti Ti-type conj 97.4 0.00074 1.6E-08 73.0 10.5 62 120-189 351-413 (744)
198 PF13871 Helicase_C_4: Helicas 97.4 0.00076 1.6E-08 63.0 8.5 81 354-434 52-144 (278)
199 smart00492 HELICc3 helicase su 97.4 0.0018 4E-08 54.6 10.1 72 346-417 30-135 (141)
200 PF00580 UvrD-helicase: UvrD/R 97.3 0.00062 1.3E-08 65.9 7.8 123 122-256 1-125 (315)
201 smart00491 HELICc2 helicase su 97.3 0.0018 3.9E-08 54.7 9.2 68 351-418 32-137 (142)
202 KOG0383 Predicted helicase [Ge 97.3 2.8E-05 6E-10 80.8 -2.6 78 298-376 615-696 (696)
203 KOG1131 RNA polymerase II tran 97.3 0.0037 8.1E-08 62.0 12.0 72 119-194 14-89 (755)
204 COG2805 PilT Tfp pilus assembl 97.1 0.0011 2.3E-08 61.7 6.3 53 92-164 99-152 (353)
205 PF13401 AAA_22: AAA domain; P 97.0 0.001 2.2E-08 55.4 5.2 18 136-153 4-21 (131)
206 PRK04296 thymidine kinase; Pro 97.0 0.00074 1.6E-08 60.3 4.5 35 138-180 4-38 (190)
207 KOG0298 DEAD box-containing he 97.0 0.0019 4.1E-08 70.4 7.5 97 314-414 1222-1318(1394)
208 cd00009 AAA The AAA+ (ATPases 96.8 0.0093 2E-07 50.0 9.3 17 136-152 19-35 (151)
209 PF14617 CMS1: U3-containing 9 96.8 0.0026 5.5E-08 58.8 5.9 85 171-256 125-211 (252)
210 PRK10919 ATP-dependent DNA hel 96.8 0.0058 1.2E-07 65.6 9.5 70 121-196 2-71 (672)
211 TIGR02760 TraI_TIGR conjugativ 96.7 0.036 7.7E-07 66.1 16.3 63 121-191 429-493 (1960)
212 PRK11889 flhF flagellar biosyn 96.7 0.1 2.2E-06 51.4 16.0 142 137-323 242-388 (436)
213 PRK12723 flagellar biosynthesi 96.6 0.12 2.6E-06 51.4 16.8 146 137-323 175-323 (388)
214 PF05970 PIF1: PIF1-like helic 96.6 0.0045 9.8E-08 61.3 6.9 60 121-188 1-66 (364)
215 TIGR01075 uvrD DNA helicase II 96.6 0.0098 2.1E-07 64.5 9.6 71 120-196 3-73 (715)
216 PRK11054 helD DNA helicase IV; 96.6 0.0086 1.9E-07 64.0 8.9 72 119-196 194-265 (684)
217 smart00382 AAA ATPases associa 96.5 0.0028 6.1E-08 52.8 3.9 41 136-184 2-42 (148)
218 PRK08181 transposase; Validate 96.5 0.016 3.4E-07 54.6 9.2 57 123-188 89-149 (269)
219 PRK11773 uvrD DNA-dependent he 96.5 0.01 2.3E-07 64.3 9.0 71 120-196 8-78 (721)
220 PHA02533 17 large terminase pr 96.4 0.014 3.1E-07 60.4 9.3 124 120-260 58-183 (534)
221 PRK07952 DNA replication prote 96.3 0.036 7.9E-07 51.4 10.1 41 137-186 100-140 (244)
222 PRK10917 ATP-dependent DNA hel 96.3 0.028 6.1E-07 60.5 10.7 90 297-386 293-388 (681)
223 PRK06526 transposase; Provisio 96.3 0.0048 1E-07 57.7 4.2 24 131-154 93-116 (254)
224 cd01124 KaiC KaiC is a circadi 96.2 0.053 1.1E-06 48.0 10.5 49 139-196 2-50 (187)
225 PRK05703 flhF flagellar biosyn 96.1 0.14 3.1E-06 51.6 14.4 166 136-346 221-393 (424)
226 TIGR01074 rep ATP-dependent DN 96.1 0.035 7.5E-07 59.9 10.6 69 122-196 2-70 (664)
227 COG1875 NYN ribonuclease and A 96.1 0.017 3.6E-07 55.4 6.9 64 117-185 224-289 (436)
228 COG1484 DnaC DNA replication p 96.0 0.023 4.9E-07 53.2 7.4 52 134-194 103-154 (254)
229 PRK06921 hypothetical protein; 96.0 0.07 1.5E-06 50.3 10.6 45 135-187 116-160 (266)
230 PRK11331 5-methylcytosine-spec 95.9 0.02 4.3E-07 57.3 6.8 33 122-154 180-212 (459)
231 TIGR00643 recG ATP-dependent D 95.9 0.044 9.6E-07 58.5 10.0 91 296-386 266-362 (630)
232 COG3973 Superfamily I DNA and 95.9 0.093 2E-06 53.6 11.2 91 104-196 187-284 (747)
233 cd01120 RecA-like_NTPases RecA 95.8 0.064 1.4E-06 46.0 9.1 36 139-182 2-37 (165)
234 COG1219 ClpX ATP-dependent pro 95.8 0.18 3.8E-06 47.7 11.9 27 135-163 96-122 (408)
235 COG1419 FlhF Flagellar GTP-bin 95.7 0.04 8.6E-07 54.1 8.0 166 136-344 203-372 (407)
236 PF05496 RuvB_N: Holliday junc 95.7 0.016 3.5E-07 52.3 4.9 16 138-153 52-67 (233)
237 COG3421 Uncharacterized protei 95.7 0.015 3.3E-07 58.9 5.1 109 141-260 2-126 (812)
238 PRK05580 primosome assembly pr 95.7 0.11 2.5E-06 55.8 12.1 95 294-389 170-266 (679)
239 TIGR00595 priA primosomal prot 95.5 0.11 2.3E-06 53.9 10.8 92 296-388 7-100 (505)
240 PRK14712 conjugal transfer nic 95.5 0.055 1.2E-06 62.4 9.3 63 120-188 834-900 (1623)
241 TIGR02785 addA_Gpos recombinat 95.5 0.058 1.2E-06 62.0 9.5 122 122-257 2-126 (1232)
242 COG1435 Tdk Thymidine kinase [ 95.4 0.12 2.5E-06 45.5 9.0 103 137-272 5-107 (201)
243 PRK12377 putative replication 95.4 0.098 2.1E-06 48.6 9.2 46 136-190 101-146 (248)
244 TIGR00580 mfd transcription-re 95.4 0.085 1.9E-06 58.3 10.0 82 305-386 492-578 (926)
245 CHL00181 cbbX CbbX; Provisiona 95.4 0.82 1.8E-05 43.6 15.5 20 136-155 59-78 (287)
246 PRK14722 flhF flagellar biosyn 95.4 0.023 5E-07 55.9 5.0 20 136-155 137-156 (374)
247 PRK06995 flhF flagellar biosyn 95.4 0.045 9.7E-07 55.7 7.2 20 136-155 256-275 (484)
248 COG2256 MGS1 ATPase related to 95.3 0.044 9.6E-07 53.3 6.4 17 138-154 50-66 (436)
249 PRK14086 dnaA chromosomal repl 95.2 0.29 6.2E-06 51.3 12.6 46 138-190 316-361 (617)
250 PF05127 Helicase_RecD: Helica 95.2 0.003 6.5E-08 55.1 -1.4 111 140-271 1-111 (177)
251 COG1444 Predicted P-loop ATPas 95.2 0.057 1.2E-06 57.3 7.6 81 114-200 207-289 (758)
252 COG4962 CpaF Flp pilus assembl 95.2 0.042 9E-07 52.6 5.9 59 118-185 154-213 (355)
253 PRK13833 conjugal transfer pro 95.2 0.061 1.3E-06 51.9 7.2 65 113-185 122-187 (323)
254 KOG0989 Replication factor C, 95.2 0.04 8.6E-07 51.7 5.6 30 242-272 125-154 (346)
255 TIGR01073 pcrA ATP-dependent D 95.2 0.11 2.5E-06 56.5 10.2 71 120-196 3-73 (726)
256 COG3972 Superfamily I DNA and 95.1 0.78 1.7E-05 46.0 14.4 80 109-196 151-230 (660)
257 PRK11823 DNA repair protein Ra 95.0 0.12 2.7E-06 52.5 9.4 95 129-260 68-170 (446)
258 PRK13709 conjugal transfer nic 95.0 0.12 2.6E-06 60.4 10.1 65 120-188 966-1032(1747)
259 cd01122 GP4d_helicase GP4d_hel 95.0 0.045 9.8E-07 51.8 5.8 53 133-193 27-79 (271)
260 PF03354 Terminase_1: Phage Te 95.0 0.089 1.9E-06 54.3 8.3 71 124-198 1-80 (477)
261 PRK08116 hypothetical protein; 95.0 0.18 3.9E-06 47.6 9.7 45 137-190 115-159 (268)
262 KOG0745 Putative ATP-dependent 95.0 0.034 7.4E-07 54.4 4.7 35 137-181 227-261 (564)
263 PRK07764 DNA polymerase III su 94.9 0.23 4.9E-06 54.3 11.5 18 245-262 119-136 (824)
264 PTZ00112 origin recognition co 94.9 0.22 4.7E-06 53.8 10.8 17 245-261 868-884 (1164)
265 COG1474 CDC6 Cdc6-related prot 94.9 0.58 1.3E-05 46.2 13.2 25 138-163 44-68 (366)
266 PF05621 TniB: Bacterial TniB 94.8 0.11 2.3E-06 49.3 7.6 53 137-194 62-118 (302)
267 cd01121 Sms Sms (bacterial rad 94.8 0.19 4.2E-06 49.7 9.7 98 128-259 69-171 (372)
268 PHA03333 putative ATPase subun 94.7 0.46 9.9E-06 50.0 12.3 69 122-197 170-241 (752)
269 TIGR03015 pepcterm_ATPase puta 94.7 0.066 1.4E-06 50.6 6.1 33 120-152 22-59 (269)
270 PRK00149 dnaA chromosomal repl 94.7 0.69 1.5E-05 47.3 13.8 47 137-190 149-195 (450)
271 PRK12422 chromosomal replicati 94.6 0.71 1.5E-05 47.0 13.6 42 137-187 142-183 (445)
272 TIGR02782 TrbB_P P-type conjug 94.6 0.11 2.5E-06 49.8 7.5 67 111-185 108-175 (299)
273 PRK14873 primosome assembly pr 94.6 0.3 6.4E-06 52.2 11.2 93 296-389 170-265 (665)
274 PRK08084 DNA replication initi 94.6 0.084 1.8E-06 48.9 6.3 17 136-152 45-61 (235)
275 PTZ00293 thymidine kinase; Pro 94.6 0.17 3.6E-06 45.6 7.8 39 136-182 4-42 (211)
276 PRK06731 flhF flagellar biosyn 94.6 2.4 5.1E-05 40.0 15.9 145 135-324 74-223 (270)
277 TIGR01547 phage_term_2 phage t 94.5 0.1 2.2E-06 52.5 7.2 120 138-273 3-124 (396)
278 PRK14974 cell division protein 94.5 0.19 4.2E-06 48.9 8.8 50 138-195 142-194 (336)
279 TIGR00362 DnaA chromosomal rep 94.5 1.2 2.6E-05 44.9 14.9 42 138-186 138-179 (405)
280 PRK08727 hypothetical protein; 94.5 0.12 2.6E-06 47.8 7.0 16 137-152 42-57 (233)
281 PRK13894 conjugal transfer ATP 94.5 0.13 2.9E-06 49.7 7.6 67 111-185 124-191 (319)
282 TIGR02524 dot_icm_DotB Dot/Icm 94.4 0.12 2.6E-06 50.9 7.1 27 135-162 133-159 (358)
283 KOG0701 dsRNA-specific nucleas 94.3 0.03 6.5E-07 63.8 3.2 94 315-408 294-399 (1606)
284 TIGR02760 TraI_TIGR conjugativ 94.3 0.12 2.5E-06 61.9 8.0 62 120-188 1018-1084(1960)
285 KOG0991 Replication factor C, 94.3 0.083 1.8E-06 47.6 5.1 27 245-272 112-138 (333)
286 TIGR03420 DnaA_homol_Hda DnaA 94.2 0.26 5.6E-06 45.1 8.7 20 135-154 37-56 (226)
287 TIGR02525 plasmid_TraJ plasmid 94.2 0.15 3.2E-06 50.5 7.3 27 136-163 149-175 (372)
288 PRK14723 flhF flagellar biosyn 94.2 0.11 2.4E-06 55.7 6.8 19 137-155 186-204 (767)
289 TIGR03881 KaiC_arch_4 KaiC dom 94.1 0.3 6.6E-06 44.9 8.9 53 135-196 19-71 (229)
290 PRK10689 transcription-repair 94.1 0.29 6.3E-06 55.6 10.2 77 310-386 646-727 (1147)
291 PF05876 Terminase_GpA: Phage 94.1 0.051 1.1E-06 56.9 4.0 68 121-195 16-86 (557)
292 PRK06893 DNA replication initi 94.0 0.12 2.6E-06 47.6 6.0 16 137-152 40-55 (229)
293 PF01695 IstB_IS21: IstB-like 94.0 0.14 3.1E-06 45.0 6.2 48 132-188 43-90 (178)
294 KOG0298 DEAD box-containing he 93.9 0.066 1.4E-06 59.0 4.6 101 136-238 374-484 (1394)
295 PF06733 DEAD_2: DEAD_2; Inte 93.9 0.036 7.8E-07 48.7 2.2 44 217-260 114-159 (174)
296 KOG2028 ATPase related to the 93.9 0.15 3.2E-06 49.1 6.3 21 133-153 157-179 (554)
297 COG2804 PulE Type II secretory 93.9 0.13 2.9E-06 51.8 6.3 41 122-163 242-284 (500)
298 COG1200 RecG RecG-like helicas 93.8 0.49 1.1E-05 49.4 10.4 87 300-386 298-389 (677)
299 TIGR00064 ftsY signal recognit 93.8 0.36 7.8E-06 45.7 8.9 19 137-155 73-91 (272)
300 PRK00411 cdc6 cell division co 93.8 0.3 6.6E-06 49.0 9.0 24 137-161 56-79 (394)
301 PRK08533 flagellar accessory p 93.8 0.45 9.8E-06 43.8 9.4 54 134-196 22-75 (230)
302 PF06745 KaiC: KaiC; InterPro 93.8 0.27 5.9E-06 45.1 7.9 53 136-196 19-71 (226)
303 PRK13900 type IV secretion sys 93.7 0.19 4.1E-06 49.0 7.0 44 133-185 157-200 (332)
304 COG1110 Reverse gyrase [DNA re 93.7 0.26 5.6E-06 53.5 8.4 63 311-373 123-191 (1187)
305 PF02456 Adeno_IVa2: Adenoviru 93.7 0.14 3.1E-06 48.1 5.7 41 139-185 90-130 (369)
306 PRK12726 flagellar biosynthesi 93.7 0.24 5.2E-06 48.7 7.5 19 136-154 206-224 (407)
307 COG0470 HolB ATPase involved i 93.7 0.8 1.7E-05 44.4 11.5 24 139-163 27-50 (325)
308 PRK10436 hypothetical protein; 93.6 0.17 3.7E-06 51.5 6.8 39 123-162 203-243 (462)
309 TIGR02881 spore_V_K stage V sp 93.6 0.18 3.9E-06 47.5 6.5 18 137-154 43-60 (261)
310 PRK13851 type IV secretion sys 93.6 0.1 2.2E-06 51.0 4.9 45 132-185 158-202 (344)
311 PRK12727 flagellar biosynthesi 93.6 0.27 5.9E-06 50.4 8.0 20 135-154 349-368 (559)
312 TIGR01420 pilT_fam pilus retra 93.6 0.22 4.8E-06 48.9 7.3 42 136-184 122-163 (343)
313 COG1198 PriA Primosomal protei 93.4 0.27 5.9E-06 52.5 8.0 96 290-386 221-318 (730)
314 PRK05642 DNA replication initi 93.4 0.22 4.7E-06 46.1 6.6 16 137-152 46-61 (234)
315 TIGR03689 pup_AAA proteasome A 93.3 0.85 1.8E-05 47.0 11.2 17 136-152 216-232 (512)
316 PRK06067 flagellar accessory p 93.3 0.81 1.7E-05 42.2 10.3 52 136-196 25-76 (234)
317 PRK07003 DNA polymerase III su 93.2 0.44 9.5E-06 50.9 9.0 19 245-263 118-136 (830)
318 PF00004 AAA: ATPase family as 93.2 0.41 9E-06 39.3 7.4 14 139-152 1-14 (132)
319 PHA00729 NTP-binding motif con 93.1 0.39 8.5E-06 43.7 7.6 17 138-154 19-35 (226)
320 PRK14956 DNA polymerase III su 93.1 0.23 5E-06 50.4 6.7 17 139-155 43-59 (484)
321 TIGR03877 thermo_KaiC_1 KaiC d 93.1 0.16 3.5E-06 47.0 5.3 52 136-196 21-72 (237)
322 TIGR02928 orc1/cdc6 family rep 93.0 0.75 1.6E-05 45.6 10.3 24 137-161 41-64 (365)
323 cd01125 repA Hexameric Replica 92.9 1 2.3E-05 41.7 10.3 42 138-179 3-48 (239)
324 TIGR03499 FlhF flagellar biosy 92.8 0.12 2.7E-06 49.2 4.2 18 137-154 195-212 (282)
325 TIGR00614 recQ_fam ATP-depende 92.8 2.2 4.8E-05 44.0 13.6 75 312-386 50-132 (470)
326 PRK14964 DNA polymerase III su 92.8 0.37 7.9E-06 49.4 7.7 19 137-155 36-54 (491)
327 PRK13764 ATPase; Provisional 92.8 0.25 5.4E-06 51.8 6.6 27 135-162 256-282 (602)
328 PRK07994 DNA polymerase III su 92.8 0.64 1.4E-05 49.3 9.6 18 245-262 118-135 (647)
329 PF05729 NACHT: NACHT domain 92.8 2.1 4.6E-05 36.5 11.7 53 303-359 109-162 (166)
330 PRK05973 replicative DNA helic 92.8 0.39 8.4E-06 44.3 7.1 66 121-196 50-115 (237)
331 TIGR01425 SRP54_euk signal rec 92.7 1 2.2E-05 45.3 10.5 17 138-154 102-118 (429)
332 PF02534 T4SS-DNA_transf: Type 92.6 0.15 3.3E-06 52.5 4.7 50 137-196 45-94 (469)
333 PRK12402 replication factor C 92.5 0.52 1.1E-05 46.1 8.2 17 138-154 38-54 (337)
334 KOG1513 Nuclear helicase MOP-3 92.4 0.25 5.5E-06 52.0 5.9 79 357-435 851-941 (1300)
335 PRK08903 DnaA regulatory inact 92.4 0.41 8.8E-06 44.0 6.9 17 136-152 42-58 (227)
336 PRK14960 DNA polymerase III su 92.3 0.67 1.4E-05 48.9 8.9 18 138-155 39-56 (702)
337 COG3267 ExeA Type II secretory 92.3 0.67 1.5E-05 42.6 7.8 57 132-195 46-103 (269)
338 TIGR02538 type_IV_pilB type IV 92.2 0.33 7.2E-06 51.1 6.7 39 123-162 301-341 (564)
339 PRK05707 DNA polymerase III su 92.2 0.91 2E-05 44.2 9.3 87 121-208 3-114 (328)
340 cd01130 VirB11-like_ATPase Typ 92.2 0.34 7.5E-06 43.0 5.9 32 121-152 9-41 (186)
341 PRK14087 dnaA chromosomal repl 92.2 0.55 1.2E-05 47.9 8.1 49 137-192 142-190 (450)
342 TIGR02655 circ_KaiC circadian 92.1 0.53 1.2E-05 48.6 8.1 61 127-196 249-314 (484)
343 cd01128 rho_factor Transcripti 92.1 0.29 6.3E-06 45.6 5.5 19 133-151 13-31 (249)
344 cd01129 PulE-GspE PulE/GspE Th 92.0 0.35 7.7E-06 45.5 6.0 53 123-183 65-119 (264)
345 cd01126 TraG_VirD4 The TraG/Tr 92.0 0.15 3.2E-06 51.1 3.7 48 138-195 1-48 (384)
346 cd00984 DnaB_C DnaB helicase C 92.0 0.17 3.8E-06 46.9 3.9 39 134-179 11-49 (242)
347 TIGR02012 tigrfam_recA protein 91.9 0.32 7E-06 46.9 5.7 43 136-186 55-97 (321)
348 PF13173 AAA_14: AAA domain 91.9 0.95 2.1E-05 37.3 7.9 25 246-272 61-85 (128)
349 TIGR00767 rho transcription te 91.8 0.46 1E-05 47.0 6.7 20 133-152 165-184 (415)
350 COG0552 FtsY Signal recognitio 91.8 1.5 3.2E-05 42.1 9.8 105 138-273 141-249 (340)
351 PRK12724 flagellar biosynthesi 91.7 3.2 6.9E-05 41.6 12.5 20 138-157 225-244 (432)
352 PF01443 Viral_helicase1: Vira 91.7 0.067 1.5E-06 49.3 0.9 14 139-152 1-14 (234)
353 PRK13897 type IV secretion sys 91.6 0.18 3.8E-06 53.1 3.9 50 137-196 159-208 (606)
354 PRK06645 DNA polymerase III su 91.5 0.62 1.3E-05 48.1 7.6 18 138-155 45-62 (507)
355 PRK14958 DNA polymerase III su 91.5 0.26 5.5E-06 51.1 4.9 18 138-155 40-57 (509)
356 PRK09376 rho transcription ter 91.5 0.56 1.2E-05 46.3 6.9 29 124-152 154-185 (416)
357 PF03237 Terminase_6: Terminas 91.4 1.4 3.1E-05 43.3 10.1 108 140-262 1-113 (384)
358 PRK06835 DNA replication prote 91.3 0.8 1.7E-05 44.5 7.8 46 135-189 182-227 (329)
359 PRK13342 recombination factor 91.2 0.43 9.3E-06 48.2 6.1 17 138-154 38-54 (413)
360 COG5008 PilU Tfp pilus assembl 91.1 0.47 1E-05 43.8 5.5 25 138-163 129-153 (375)
361 PF00437 T2SE: Type II/IV secr 91.1 0.28 6E-06 46.4 4.4 44 134-185 125-168 (270)
362 PRK04195 replication factor C 91.1 1.8 3.9E-05 44.8 10.6 18 136-153 39-56 (482)
363 PRK09354 recA recombinase A; P 91.1 0.4 8.6E-06 46.8 5.4 43 136-186 60-102 (349)
364 PRK14961 DNA polymerase III su 91.0 0.87 1.9E-05 45.1 7.9 16 139-154 41-56 (363)
365 PRK14721 flhF flagellar biosyn 91.0 0.25 5.3E-06 49.6 4.0 19 136-154 191-209 (420)
366 PRK05563 DNA polymerase III su 90.9 1.2 2.5E-05 46.9 9.1 19 138-156 40-58 (559)
367 PRK09183 transposase/IS protei 90.9 0.56 1.2E-05 44.1 6.1 47 132-187 98-144 (259)
368 PRK08691 DNA polymerase III su 90.8 0.64 1.4E-05 49.4 7.0 18 138-155 40-57 (709)
369 cd01131 PilT Pilus retraction 90.8 0.37 7.9E-06 43.3 4.7 39 139-184 4-42 (198)
370 TIGR00959 ffh signal recogniti 90.8 1.4 3.1E-05 44.4 9.2 18 138-155 101-118 (428)
371 PRK14950 DNA polymerase III su 90.8 1.3 2.8E-05 46.9 9.4 18 138-155 40-57 (585)
372 PF12846 AAA_10: AAA-like doma 90.8 0.38 8.3E-06 46.0 5.1 42 137-186 2-43 (304)
373 COG0630 VirB11 Type IV secreto 90.7 0.42 9E-06 46.2 5.2 57 120-185 126-183 (312)
374 COG1197 Mfd Transcription-repa 90.7 1.5 3.3E-05 48.7 9.9 89 298-386 627-721 (1139)
375 TIGR02533 type_II_gspE general 90.7 0.46 1E-05 48.9 5.8 38 123-161 227-266 (486)
376 PLN03025 replication factor C 90.6 1.5 3.2E-05 42.6 9.1 18 137-154 35-52 (319)
377 PHA02544 44 clamp loader, smal 90.6 0.52 1.1E-05 45.7 5.9 25 246-270 100-124 (316)
378 PRK12323 DNA polymerase III su 90.5 1.2 2.5E-05 47.0 8.5 20 244-263 122-141 (700)
379 PRK00080 ruvB Holliday junctio 90.5 0.6 1.3E-05 45.6 6.2 18 137-154 52-69 (328)
380 PRK04328 hypothetical protein; 90.5 0.47 1E-05 44.3 5.3 52 136-196 23-74 (249)
381 TIGR00635 ruvB Holliday juncti 90.4 0.27 5.9E-06 47.4 3.7 16 137-152 31-46 (305)
382 PF13555 AAA_29: P-loop contai 90.4 0.36 7.9E-06 34.1 3.3 26 136-163 23-48 (62)
383 cd00544 CobU Adenosylcobinamid 90.3 1.1 2.4E-05 39.0 7.1 85 139-259 2-86 (169)
384 PF10593 Z1: Z1 domain; Inter 90.2 1.5 3.2E-05 40.6 8.2 103 337-448 110-217 (239)
385 PF00448 SRP54: SRP54-type pro 90.2 0.45 9.7E-06 42.6 4.6 16 138-153 3-18 (196)
386 CHL00176 ftsH cell division pr 90.2 4.7 0.0001 43.1 12.8 16 137-152 217-232 (638)
387 TIGR03878 thermo_KaiC_2 KaiC d 90.2 0.77 1.7E-05 43.1 6.4 36 136-179 36-71 (259)
388 TIGR03819 heli_sec_ATPase heli 90.1 0.79 1.7E-05 44.9 6.6 64 111-185 154-218 (340)
389 TIGR00416 sms DNA repair prote 90.1 2.2 4.7E-05 43.6 10.0 99 128-260 81-184 (454)
390 COG4626 Phage terminase-like p 90.1 1 2.2E-05 46.1 7.4 71 120-195 60-141 (546)
391 COG0513 SrmB Superfamily II DN 90.0 1.8 3.8E-05 45.1 9.5 67 316-386 102-179 (513)
392 PRK14962 DNA polymerase III su 90.0 1.1 2.4E-05 45.9 7.9 18 138-155 38-55 (472)
393 PRK14965 DNA polymerase III su 90.0 1.4 3.1E-05 46.5 8.8 18 138-155 40-57 (576)
394 PRK00771 signal recognition pa 90.0 0.78 1.7E-05 46.4 6.6 17 138-154 97-113 (437)
395 PRK14088 dnaA chromosomal repl 89.8 1.5 3.3E-05 44.6 8.6 38 137-180 131-168 (440)
396 PRK14701 reverse gyrase; Provi 89.7 1.5 3.3E-05 51.6 9.5 61 312-372 121-187 (1638)
397 PRK09112 DNA polymerase III su 89.7 1.8 3.9E-05 42.6 8.7 30 133-163 39-71 (351)
398 PRK08699 DNA polymerase III su 89.7 3.1 6.8E-05 40.4 10.3 59 122-181 2-80 (325)
399 PRK08769 DNA polymerase III su 89.7 2 4.3E-05 41.6 8.9 44 119-163 2-52 (319)
400 PRK14963 DNA polymerase III su 89.6 0.61 1.3E-05 48.2 5.7 16 139-154 39-54 (504)
401 PRK14949 DNA polymerase III su 89.6 1.2 2.6E-05 48.6 7.9 17 139-155 41-57 (944)
402 PRK13850 type IV secretion sys 89.5 0.34 7.5E-06 51.6 3.9 49 137-195 140-188 (670)
403 PRK14952 DNA polymerase III su 89.4 1.5 3.2E-05 46.2 8.3 17 139-155 38-54 (584)
404 cd00268 DEADc DEAD-box helicas 89.4 3.2 7E-05 37.0 9.7 71 313-387 69-149 (203)
405 PRK09111 DNA polymerase III su 89.2 1.3 2.9E-05 46.7 7.9 18 138-155 48-65 (598)
406 PTZ00146 fibrillarin; Provisio 89.2 7.4 0.00016 37.0 12.0 34 119-152 107-148 (293)
407 TIGR02788 VirB11 P-type DNA tr 89.2 0.65 1.4E-05 44.9 5.2 20 133-152 141-160 (308)
408 PF10412 TrwB_AAD_bind: Type I 89.1 0.46 1E-05 47.5 4.3 46 133-186 12-57 (386)
409 PRK10416 signal recognition pa 89.1 4 8.7E-05 39.5 10.6 17 137-153 115-131 (318)
410 PHA02535 P terminase ATPase su 89.1 1.6 3.6E-05 45.3 8.2 86 106-198 123-208 (581)
411 TIGR03743 SXT_TraD conjugative 89.1 1.1 2.4E-05 47.7 7.2 55 136-198 176-232 (634)
412 KOG0738 AAA+-type ATPase [Post 89.1 25 0.00054 34.7 17.7 16 137-152 246-261 (491)
413 PRK14955 DNA polymerase III su 88.9 1.2 2.7E-05 44.6 7.2 18 138-155 40-57 (397)
414 COG2255 RuvB Holliday junction 88.9 1.2 2.6E-05 41.6 6.4 17 138-154 54-70 (332)
415 PRK14969 DNA polymerase III su 88.9 2.2 4.9E-05 44.5 9.2 18 138-155 40-57 (527)
416 KOG0344 ATP-dependent RNA heli 88.8 4.5 9.8E-05 41.5 10.8 98 144-256 365-466 (593)
417 TIGR03754 conj_TOL_TraD conjug 88.8 1.4 3E-05 46.6 7.6 57 136-200 180-238 (643)
418 TIGR01389 recQ ATP-dependent D 88.7 2.7 5.8E-05 44.7 10.0 61 311-371 51-111 (591)
419 TIGR02639 ClpA ATP-dependent C 88.7 3.5 7.6E-05 45.0 11.0 18 137-154 204-221 (731)
420 PHA03368 DNA packaging termina 88.6 2.3 5.1E-05 44.7 8.9 108 137-260 255-366 (738)
421 PHA00012 I assembly protein 88.6 1.5 3.3E-05 42.0 7.0 25 139-163 4-28 (361)
422 COG4604 CeuD ABC-type enteroch 88.5 1.7 3.6E-05 38.6 6.6 52 135-188 26-77 (252)
423 PRK14957 DNA polymerase III su 88.5 2 4.3E-05 44.8 8.4 17 139-155 41-57 (546)
424 KOG0339 ATP-dependent RNA heli 88.4 4.8 0.0001 40.7 10.5 69 314-386 296-375 (731)
425 COG0467 RAD55 RecA-superfamily 88.4 0.9 2E-05 42.7 5.5 55 135-198 22-76 (260)
426 PRK13341 recombination factor 88.4 0.9 1.9E-05 49.1 6.0 17 138-154 54-70 (725)
427 PLN00020 ribulose bisphosphate 88.3 0.68 1.5E-05 45.3 4.6 18 137-154 149-166 (413)
428 PRK13822 conjugal transfer cou 88.3 0.65 1.4E-05 49.4 4.8 49 137-195 225-273 (641)
429 PF13177 DNA_pol3_delta2: DNA 88.2 1.1 2.4E-05 38.7 5.5 25 138-163 21-45 (162)
430 TIGR01243 CDC48 AAA family ATP 88.2 1.2 2.6E-05 48.6 7.1 17 136-152 487-503 (733)
431 PRK13876 conjugal transfer cou 88.2 0.49 1.1E-05 50.4 3.9 49 137-195 145-193 (663)
432 cd01393 recA_like RecA is a b 88.1 1.5 3.3E-05 40.0 6.8 44 136-181 19-62 (226)
433 PRK14959 DNA polymerase III su 88.0 0.49 1.1E-05 49.8 3.7 18 138-155 40-57 (624)
434 CHL00095 clpC Clp protease ATP 87.9 3 6.6E-05 46.2 10.0 18 137-154 201-218 (821)
435 cd01127 TrwB Bacterial conjuga 87.8 0.46 1E-05 48.0 3.3 45 134-186 40-84 (410)
436 COG0210 UvrD Superfamily I DNA 87.8 1.6 3.5E-05 47.1 7.7 71 121-197 2-72 (655)
437 PRK11634 ATP-dependent RNA hel 87.7 2.3 4.9E-05 45.5 8.5 70 313-386 74-154 (629)
438 TIGR02640 gas_vesic_GvpN gas v 87.7 1.3 2.7E-05 41.8 6.0 28 127-154 12-39 (262)
439 TIGR03600 phage_DnaB phage rep 87.7 2.2 4.7E-05 43.3 8.1 38 135-179 193-230 (421)
440 KOG1806 DEAD box containing he 87.7 1.1 2.3E-05 48.9 5.9 73 117-195 734-806 (1320)
441 KOG0442 Structure-specific end 87.6 3.9 8.4E-05 43.8 9.8 124 122-260 14-137 (892)
442 PF00308 Bac_DnaA: Bacterial d 87.5 1.9 4.1E-05 39.4 6.9 46 138-190 36-81 (219)
443 PRK14954 DNA polymerase III su 87.5 1.3 2.9E-05 46.8 6.6 18 138-155 40-57 (620)
444 COG1618 Predicted nucleotide k 87.3 0.81 1.7E-05 39.0 3.8 116 137-272 6-128 (179)
445 TIGR02767 TraG-Ti Ti-type conj 87.2 0.61 1.3E-05 49.3 3.9 50 137-196 212-261 (623)
446 TIGR03880 KaiC_arch_3 KaiC dom 87.2 1.3 2.8E-05 40.6 5.6 52 136-196 16-67 (224)
447 PF03796 DnaB_C: DnaB-like hel 86.9 1.2 2.7E-05 41.7 5.5 38 136-180 19-56 (259)
448 KOG0347 RNA helicase [RNA proc 86.8 1.4 3E-05 44.8 5.8 67 316-386 266-345 (731)
449 COG0466 Lon ATP-dependent Lon 86.7 1.3 2.8E-05 46.7 5.7 52 205-261 381-432 (782)
450 PF02606 LpxK: Tetraacyldisacc 86.6 5.8 0.00013 38.6 10.0 58 311-371 225-287 (326)
451 PRK13700 conjugal transfer pro 86.6 0.69 1.5E-05 49.2 3.8 70 107-186 156-227 (732)
452 PRK05896 DNA polymerase III su 86.4 1.5 3.3E-05 45.9 6.2 19 137-155 39-57 (605)
453 PRK14951 DNA polymerase III su 86.4 1.3 2.9E-05 46.8 5.8 20 244-263 122-141 (618)
454 PRK07004 replicative DNA helic 86.3 1.8 4E-05 44.3 6.7 37 136-179 213-249 (460)
455 PRK14948 DNA polymerase III su 86.2 3.4 7.5E-05 43.9 8.9 19 137-155 39-57 (620)
456 TIGR03346 chaperone_ClpB ATP-d 86.1 5.6 0.00012 44.3 10.8 18 137-154 195-212 (852)
457 PF01637 Arch_ATPase: Archaeal 86.0 1.7 3.7E-05 39.5 5.9 17 136-152 20-36 (234)
458 PRK13880 conjugal transfer cou 86.0 0.59 1.3E-05 49.8 3.1 46 137-192 176-221 (636)
459 PRK07471 DNA polymerase III su 85.9 5.7 0.00012 39.3 9.7 26 138-164 43-68 (365)
460 KOG0331 ATP-dependent RNA heli 85.9 2.7 5.8E-05 43.1 7.5 72 171-252 340-415 (519)
461 KOG0058 Peptide exporter, ABC 85.9 1.3 2.8E-05 46.7 5.3 31 244-274 620-650 (716)
462 PF04665 Pox_A32: Poxvirus A32 85.9 1.2 2.6E-05 41.0 4.6 35 138-180 15-49 (241)
463 PRK10867 signal recognition pa 85.7 2.4 5.2E-05 42.9 7.0 18 138-155 102-119 (433)
464 PRK12608 transcription termina 85.7 3.1 6.8E-05 40.9 7.6 38 124-162 118-158 (380)
465 TIGR02868 CydC thiol reductant 85.6 0.82 1.8E-05 47.9 3.9 26 133-160 358-383 (529)
466 PRK06871 DNA polymerase III su 85.5 7.1 0.00015 37.9 9.9 89 122-211 3-118 (325)
467 KOG2228 Origin recognition com 85.5 6.1 0.00013 38.1 9.0 17 136-152 49-65 (408)
468 COG3598 RepA RecA-family ATPas 85.4 2.2 4.7E-05 40.7 6.0 55 125-179 77-134 (402)
469 TIGR01054 rgy reverse gyrase. 85.3 3.7 8E-05 47.1 9.0 60 312-371 120-186 (1171)
470 TIGR00763 lon ATP-dependent pr 85.2 3.9 8.6E-05 44.9 9.0 17 136-152 347-363 (775)
471 KOG0741 AAA+-type ATPase [Post 85.1 8.6 0.00019 39.3 10.3 69 104-182 494-574 (744)
472 PRK10865 protein disaggregatio 85.1 3.8 8.2E-05 45.5 8.8 18 137-154 200-217 (857)
473 PF14516 AAA_35: AAA-like doma 85.1 7.3 0.00016 38.0 10.0 40 123-163 17-57 (331)
474 PF07728 AAA_5: AAA domain (dy 84.9 1.5 3.2E-05 36.6 4.4 15 138-152 1-15 (139)
475 TIGR02655 circ_KaiC circadian 84.8 1.5 3.3E-05 45.3 5.3 54 136-197 21-74 (484)
476 PRK07940 DNA polymerase III su 84.8 2.1 4.6E-05 42.8 6.1 19 137-155 37-55 (394)
477 PF13481 AAA_25: AAA domain; P 84.7 2.5 5.5E-05 37.4 6.2 61 135-196 31-93 (193)
478 PRK10590 ATP-dependent RNA hel 84.6 6.6 0.00014 40.2 9.9 68 315-386 77-154 (456)
479 KOG2004 Mitochondrial ATP-depe 84.6 4.9 0.00011 42.6 8.6 33 224-259 486-518 (906)
480 PF01935 DUF87: Domain of unkn 84.6 1.5 3.3E-05 40.1 4.8 43 136-185 23-65 (229)
481 TIGR03345 VI_ClpV1 type VI sec 84.6 6.8 0.00015 43.5 10.5 28 126-153 192-225 (852)
482 PRK11776 ATP-dependent RNA hel 84.5 3.7 8.1E-05 42.1 8.1 68 315-386 74-152 (460)
483 PF08423 Rad51: Rad51; InterP 84.5 2.1 4.6E-05 40.0 5.7 51 128-180 25-80 (256)
484 PRK11034 clpA ATP-dependent Cl 84.4 4.9 0.00011 43.8 9.1 19 136-154 207-225 (758)
485 KOG0742 AAA+-type ATPase [Post 84.0 1.2 2.7E-05 43.6 3.9 16 137-152 385-400 (630)
486 TIGR02237 recomb_radB DNA repa 84.0 1.6 3.5E-05 39.4 4.6 38 136-181 12-49 (209)
487 PRK00440 rfc replication facto 84.0 5.9 0.00013 38.2 8.9 16 138-153 40-55 (319)
488 PRK11192 ATP-dependent RNA hel 83.9 4.4 9.6E-05 41.2 8.3 69 314-386 74-152 (434)
489 COG0542 clpA ATP-binding subun 83.9 19 0.00042 39.1 12.9 28 126-153 496-538 (786)
490 PRK08506 replicative DNA helic 83.8 2.7 5.9E-05 43.2 6.6 49 136-193 192-240 (472)
491 KOG0733 Nuclear AAA ATPase (VC 83.8 0.85 1.8E-05 47.1 2.8 54 96-152 505-561 (802)
492 COG1074 RecB ATP-dependent exo 83.5 2.3 5E-05 48.8 6.5 57 135-194 15-71 (1139)
493 PRK11057 ATP-dependent DNA hel 83.5 6.8 0.00015 41.8 9.7 59 312-370 64-122 (607)
494 PF03969 AFG1_ATPase: AFG1-lik 83.3 8.9 0.00019 37.9 9.7 50 136-196 62-111 (362)
495 PRK13695 putative NTPase; Prov 83.2 8.8 0.00019 33.4 8.9 17 138-154 2-18 (174)
496 TIGR02759 TraD_Ftype type IV c 83.2 1.5 3.2E-05 46.2 4.4 40 135-182 175-214 (566)
497 PF12775 AAA_7: P-loop contain 83.2 0.83 1.8E-05 43.2 2.4 20 133-152 30-49 (272)
498 PRK04301 radA DNA repair and r 83.1 5.9 0.00013 38.4 8.4 43 136-180 102-144 (317)
499 KOG0739 AAA+-type ATPase [Post 83.1 3.1 6.8E-05 39.2 5.9 83 95-195 126-213 (439)
500 PRK09519 recA DNA recombinatio 83.0 2.5 5.3E-05 45.9 6.1 87 133-253 57-145 (790)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-79 Score=595.81 Aligned_cols=399 Identities=65% Similarity=1.069 Sum_probs=369.7
Q ss_pred CCCCCcccccccCCccccCCCHHHHHHHHHhccceeccCC-CCCccCCcccCC---------------------------
Q 012013 54 DGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRD-VPKPVKSFRDVG--------------------------- 105 (473)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~p~~~~~f~~~~--------------------------- 105 (473)
..+.++++++|.+++........+.+.++..+++.+++.+ +|.|..+|++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 5678899999999999999999899999999998888766 888877776543
Q ss_pred --CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhc-CCCCCCCCCCEEEEEcCcH
Q 012013 106 --FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNA-QPFLAPGDGPIVLVLAPTR 182 (473)
Q Consensus 106 --l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~-~~~~~~~~~~~vlil~Pt~ 182 (473)
+++....+++..+|..|||+|.++||.+++|+|++.+|.||||||++|++|++.++.. ......+.+|++|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 5566667777999999999999999999999999999999999999999999999998 6677788899999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCC
Q 012013 183 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262 (473)
Q Consensus 183 ~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~ 262 (473)
|||.|+.+.+.+|+..+.++++|+|||.+...|.+.+.++++|+|+||++|+++++....+|++++|+|+||||+|++++
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhh--------------------------------hcCCC-CccccccceeeEEecCchhhHHHHHHHHHh
Q 012013 263 FEPQIKKILSQV--------------------------------IIGSP-DLKANHAIRQHVDIVSESQKYNKLVKLLED 309 (473)
Q Consensus 263 ~~~~~~~i~~~~--------------------------------~~~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~ 309 (473)
|++++++|+.++ .++.. ++.+++++.|.+..++...|...|.++|..
T Consensus 256 Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~ 335 (519)
T KOG0331|consen 256 FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLED 335 (519)
T ss_pred cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHH
Confidence 999999998872 22222 556677888999999999999999999999
Q ss_pred Hh--CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEE
Q 012013 310 IM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387 (473)
Q Consensus 310 ~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~ 387 (473)
+. ..+|+||||+|++.|+.|+..|+..++++..|||+.+|.+|+.+++.|++|+++||||||+++||||||+|++|||
T Consensus 336 ~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 336 ISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN 415 (519)
T ss_pred HhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe
Confidence 87 3459999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHhccCCCC
Q 012013 388 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPP 452 (473)
Q Consensus 388 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~ 452 (473)
||+|.++++|+||+||+||+|+.|.+++|++..+...+.++++.++++++++|+.|.+++...+.
T Consensus 416 ydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~~ 480 (519)
T KOG0331|consen 416 YDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSGS 480 (519)
T ss_pred CCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999775433
No 2
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-76 Score=610.96 Aligned_cols=406 Identities=66% Similarity=1.057 Sum_probs=371.9
Q ss_pred CCCCC-CCCCCCCCcccccccCCccccCCCHHHHHHHHHhcccee-ccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCC
Q 012013 46 ESPRK-LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPT 123 (473)
Q Consensus 46 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~ 123 (473)
.++.. |+...+++++|+||.+++.+..+++++++++++..++.+ .+.++|.|+.+|++++|++.++++|.+.+|.+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt 154 (545)
T PTZ00110 75 RLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPT 154 (545)
T ss_pred ccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCC
Confidence 34444 998899999999999999999999999999999988886 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceE
Q 012013 124 PIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 203 (473)
Q Consensus 124 ~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~ 203 (473)
|+|.++||.+++++|+|++||||||||++|++|++.++..++......++.+|||+||++||.|+.+++.+|+....+++
T Consensus 155 ~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~ 234 (545)
T PTZ00110 155 PIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRN 234 (545)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccE
Confidence 99999999999999999999999999999999999998876655556789999999999999999999999998889999
Q ss_pred EEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhhh--------
Q 012013 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVI-------- 275 (473)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~~-------- 275 (473)
.+++||.....+...+..+++|+|+||++|.+++......+.++++|||||||+|++++|.++++.|+..+.
T Consensus 235 ~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~ 314 (545)
T PTZ00110 235 TVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 314 (545)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEE
Confidence 999999998888888888999999999999999998888899999999999999999999999999976521
Q ss_pred ------------------------cCCCCccccccceeeEEecCchhhHHHHHHHHHhHh-CCCeEEEEeCChHHHHHHH
Q 012013 276 ------------------------IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQIT 330 (473)
Q Consensus 276 ------------------------~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~ 330 (473)
++.........+.+.+..+....|...|.+++.... ...++||||++++.|+.++
T Consensus 315 SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~ 394 (545)
T PTZ00110 315 SATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLT 394 (545)
T ss_pred EeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHH
Confidence 011112233456666777777888899999998876 5669999999999999999
Q ss_pred HHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCC
Q 012013 331 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK 410 (473)
Q Consensus 331 ~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 410 (473)
+.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||||++++||+||+|.++++|+||+||+||.|..
T Consensus 395 ~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~ 474 (545)
T PTZ00110 395 KELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAK 474 (545)
T ss_pred HHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHhccCCC
Q 012013 411 GTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAP 451 (473)
Q Consensus 411 g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~ 451 (473)
|.|++|+++++...+.+|+++|+++++++|++|.+|+....
T Consensus 475 G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~ 515 (545)
T PTZ00110 475 GASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERS 515 (545)
T ss_pred ceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999987544
No 3
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-73 Score=527.98 Aligned_cols=397 Identities=47% Similarity=0.798 Sum_probs=367.6
Q ss_pred CCCCcccccccCCccccCCCHHHHHHHHHh-ccceec------cCCCCCccCCccc-CCCCHHHHHHHHHCCCCCCCHHH
Q 012013 55 GLTPFEKNFYVESPSVAAMSEREVEEYRQQ-REITVE------GRDVPKPVKSFRD-VGFPDYVMQEISKAGFFEPTPIQ 126 (473)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~------~~~~p~~~~~f~~-~~l~~~~~~~l~~~~~~~~~~~Q 126 (473)
.++|+.|+||.+.+..+.+|..+++++++. ..|.+. ...+|+|..+|++ +.-.+++++.+.+.||.+|+|+|
T Consensus 168 ~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIq 247 (629)
T KOG0336|consen 168 KLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQ 247 (629)
T ss_pred cCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcch
Confidence 578999999999999999999999999998 455542 2358899999987 46788999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCC-CCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEE
Q 012013 127 AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTC 205 (473)
Q Consensus 127 ~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~ 205 (473)
.||||.+++|.|++.+|.||+|||++|++|.+.++..++.. ....++.+|+++||++||.|+.-++.++. ..+++.+|
T Consensus 248 SQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc 326 (629)
T KOG0336|consen 248 SQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVC 326 (629)
T ss_pred hcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEE
Confidence 99999999999999999999999999999999999887643 34558999999999999999999999986 55789999
Q ss_pred EEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhh------------
Q 012013 206 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ------------ 273 (473)
Q Consensus 206 ~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~------------ 273 (473)
+|||.....++..+..+.+|+++||++|.++...+..++..+.|||+||||+|+||+|++++++|+.-
T Consensus 327 ~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSA 406 (629)
T KOG0336|consen 327 VYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSA 406 (629)
T ss_pred EecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred -------------------hhcCCCCccccccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHH
Q 012013 274 -------------------VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR 334 (473)
Q Consensus 274 -------------------~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~ 334 (473)
+.+++.++.+...++|.+.+..+.+|+..+..+++...+..|+||||..+..|+.|..-|.
T Consensus 407 TWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~ 486 (629)
T KOG0336|consen 407 TWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFC 486 (629)
T ss_pred cCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhh
Confidence 4456667777788899998888899998888889888888899999999999999999999
Q ss_pred hCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEE
Q 012013 335 MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY 414 (473)
Q Consensus 335 ~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 414 (473)
-.|+....+||+-.+.+|+..++.|++|+++||||||++++|+|+++++||+|||+|.+++.|+||+||+||+|++|+++
T Consensus 487 l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~si 566 (629)
T KOG0336|consen 487 LKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSI 566 (629)
T ss_pred hcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHHHHHhCCCCCHHHHHhccCCCC
Q 012013 415 TFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPP 452 (473)
Q Consensus 415 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~ 452 (473)
.|++.+|..++.+|+++|+++.|++|++|..||+.+.-
T Consensus 567 s~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk~ 604 (629)
T KOG0336|consen 567 SFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYKL 604 (629)
T ss_pred EEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987644
No 4
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-72 Score=528.61 Aligned_cols=398 Identities=47% Similarity=0.764 Sum_probs=376.4
Q ss_pred CCCCCCCCcccccccCCccccCCCHHHHHHHHHhccceeccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHH
Q 012013 51 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGW 130 (473)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i 130 (473)
......+||+|+||.++.++..++..++..++....+.+.+..+|+|+.+|++.++++.++.++.+..|.+|||+|.+++
T Consensus 175 hs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qal 254 (731)
T KOG0339|consen 175 HSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQAL 254 (731)
T ss_pred hhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCccccccc
Confidence 44556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCc
Q 012013 131 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 210 (473)
Q Consensus 131 ~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~ 210 (473)
|..+++++++-+|.||||||.+|+.|++.+++.++.+.++++|..|||||||+||.|++.++++|++..+++++++|||.
T Consensus 255 ptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGg 334 (731)
T KOG0339|consen 255 PTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGG 334 (731)
T ss_pred ccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhhhcCC------------
Q 012013 211 PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGS------------ 278 (473)
Q Consensus 211 ~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~~~~~------------ 278 (473)
+..+|...+..+++||||||++|++++.....++.++++|||||+++|+++||+++++.|...+....
T Consensus 335 sk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~k 414 (731)
T KOG0339|consen 335 SKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKK 414 (731)
T ss_pred cHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999987621111
Q ss_pred ------------------CCccccccceeeEEecC-chhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCC
Q 012013 279 ------------------PDLKANHAIRQHVDIVS-ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP 339 (473)
Q Consensus 279 ------------------~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~ 339 (473)
.--..+..|.|.+.++. +..|++.|+..|......+++|||+..+..+++++..|...++.
T Consensus 415 Ie~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~ 494 (731)
T KOG0339|consen 415 IEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFN 494 (731)
T ss_pred HHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccce
Confidence 01134567888888775 46789999999999888889999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEecc
Q 012013 340 ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA 419 (473)
Q Consensus 340 ~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 419 (473)
+..+||++.+.+|.+++..|+++..+|||+||++++|+||+++..||+||.-.+++.|.|||||+||+|..|.+|+++++
T Consensus 495 v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTe 574 (731)
T KOG0339|consen 495 VSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTE 574 (731)
T ss_pred eeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCCCHHHHHhcc
Q 012013 420 ANARFAKELITILEEAGQKVSPELAAMGR 448 (473)
Q Consensus 420 ~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 448 (473)
.|..++-.|++.|+.++|.||++|.+|+.
T Consensus 575 KDa~fAG~LVnnLe~agQnVP~~l~dlam 603 (731)
T KOG0339|consen 575 KDAEFAGHLVNNLEGAGQNVPDELMDLAM 603 (731)
T ss_pred hhHHHhhHHHHHHhhccccCChHHHHHHh
Confidence 99999999999999999999999999975
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6.3e-69 Score=510.66 Aligned_cols=380 Identities=45% Similarity=0.756 Sum_probs=350.1
Q ss_pred ccccCCCHHHHHHHHHhccceeccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCC
Q 012013 68 PSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGS 147 (473)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGs 147 (473)
.....|++.++..|+..+.|.++|..+|.|+.+|++.+||..+++.+.+.+|..|+|+|.+++|..++.+|+|.+|.|||
T Consensus 214 k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgs 293 (673)
T KOG0333|consen 214 KVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGS 293 (673)
T ss_pred hhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccC
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhHHHHHHHHhcCCCC----CCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCC
Q 012013 148 GKTLAYLLPAIVHVNAQPFL----APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGV 223 (473)
Q Consensus 148 GKT~~~~l~~l~~~~~~~~~----~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~ 223 (473)
|||++|++|++..+...|.. ....+|.++|++|||+||+|+.++-.+|+..++++++.+.||....++--.+..+|
T Consensus 294 Gktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gc 373 (673)
T KOG0333|consen 294 GKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGC 373 (673)
T ss_pred CccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccc
Confidence 99999999999999887743 34569999999999999999999999999999999999999999999888899999
Q ss_pred cEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhh-----------------------------
Q 012013 224 EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV----------------------------- 274 (473)
Q Consensus 224 ~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~----------------------------- 274 (473)
+|+|+||++|++.|.+...-++++.+||+|||++|.||+|++++.+++.++
T Consensus 374 eiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yr 453 (673)
T KOG0333|consen 374 EIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYR 453 (673)
T ss_pred eeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccccee
Confidence 999999999999999988889999999999999999999999999999872
Q ss_pred ---------------------------hcCCCCccccccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHH
Q 012013 275 ---------------------------IIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 327 (473)
Q Consensus 275 ---------------------------~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~ 327 (473)
.+++.. .....+.|.+..+.+..|...|.++|... -..++|||+|+++.|+
T Consensus 454 qT~mftatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d 531 (673)
T KOG0333|consen 454 QTVMFTATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGAD 531 (673)
T ss_pred EEEEEecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHH
Confidence 222222 23345678888889999999999999886 3468999999999999
Q ss_pred HHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCC
Q 012013 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 407 (473)
Q Consensus 328 ~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 407 (473)
.|++.|.+.++.+..+||+.++++|+.+++.|++|..+|||||+++++|||||+|.+|||||++.++++|.|||||+||+
T Consensus 532 ~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRA 611 (673)
T KOG0333|consen 532 ALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRA 611 (673)
T ss_pred HHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeccccHHHHHHHHHHHH-HhCCCCCHHHHHhccC
Q 012013 408 GAKGTAYTFFTAANARFAKELITILE-EAGQKVSPELAAMGRG 449 (473)
Q Consensus 408 g~~g~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~l~~~~~~ 449 (473)
|+.|++++|+++.|...+.+|...|. .....+|++|......
T Consensus 612 Gk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~a 654 (673)
T KOG0333|consen 612 GKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPDA 654 (673)
T ss_pred ccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChhh
Confidence 99999999999999998899998887 4577889998766543
No 6
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.1e-66 Score=533.27 Aligned_cols=395 Identities=36% Similarity=0.626 Sum_probs=351.4
Q ss_pred CCCCCCcccccccCCccccC-CCHHHHHHHHHhccceeccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHH
Q 012013 53 LDGLTPFEKNFYVESPSVAA-MSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWP 131 (473)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~ 131 (473)
..++++++++||..++.... ++.++++.+++..+|.+.|.+.|.|+.+|+++++++.+++.|.+.||.+|||+|.++|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip 153 (518)
T PLN00206 74 PKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIP 153 (518)
T ss_pred hhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 35568889999999887754 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCC--CCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 012013 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF--LAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGG 209 (473)
Q Consensus 132 ~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~--~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg 209 (473)
.+++++|++++||||||||++|++|++.++..... .....++++|||+||++||.|+.+.++.+....++++.+++||
T Consensus 154 ~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG 233 (518)
T PLN00206 154 AALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGG 233 (518)
T ss_pred HHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECC
Confidence 99999999999999999999999999998764321 1223578999999999999999999999988888999999999
Q ss_pred ccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhh-----hcCCCCc---
Q 012013 210 VPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV-----IIGSPDL--- 281 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~-----~~~~~~~--- 281 (473)
.....+...+..+++|+|+||++|.+++......+.++.+|||||||+|++++|++++..++..+ ...++++
T Consensus 234 ~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~~ 313 (518)
T PLN00206 234 DAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSPE 313 (518)
T ss_pred cchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCHH
Confidence 98888888888889999999999999999888889999999999999999999999998886541 1111111
Q ss_pred ---------------------cccccceeeEEecCchhhHHHHHHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHh-CCC
Q 012013 282 ---------------------KANHAIRQHVDIVSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRM-DGW 338 (473)
Q Consensus 282 ---------------------~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~-~~~ 338 (473)
.....+.+.+..+....|...+.+++..... ..++||||+++..++.++..|.. .++
T Consensus 314 v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~ 393 (518)
T PLN00206 314 VEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGL 393 (518)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCc
Confidence 1123345555666677788888888876543 34899999999999999999975 689
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEec
Q 012013 339 PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 418 (473)
Q Consensus 339 ~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 418 (473)
.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.++.+|+||+||+||.|..|.+++|++
T Consensus 394 ~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~ 473 (518)
T PLN00206 394 KALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVN 473 (518)
T ss_pred ceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhCCCCCHHHHHhc
Q 012013 419 AANARFAKELITILEEAGQKVSPELAAMG 447 (473)
Q Consensus 419 ~~~~~~~~~l~~~l~~~~~~~~~~l~~~~ 447 (473)
.++...+.++++.|+.+++.+|++|.++.
T Consensus 474 ~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 474 EEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred hhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 99999999999999999999999999886
No 7
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-66 Score=495.75 Aligned_cols=374 Identities=44% Similarity=0.720 Sum_probs=338.4
Q ss_pred HHHHhccce--eccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHH
Q 012013 80 EYRQQREIT--VEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157 (473)
Q Consensus 80 ~~~~~~~i~--~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~ 157 (473)
.+.+.+++. +.|.++|.++..|.+..+.+.+..++...+|..|||+|+.+||.+..|++++++|+||||||.+|++|+
T Consensus 53 nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPi 132 (482)
T KOG0335|consen 53 NFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPI 132 (482)
T ss_pred ccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHH
Confidence 444555554 468899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCC-----CCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHH
Q 012013 158 IVHVNAQPFLA-----PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232 (473)
Q Consensus 158 l~~~~~~~~~~-----~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~ 232 (473)
+.+++...... ....|.+||++||||||.|+++++++|...+.++++..||+.+...+.+.+.++|+|+||||++
T Consensus 133 i~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGr 212 (482)
T KOG0335|consen 133 ISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGR 212 (482)
T ss_pred HHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCch
Confidence 99998764321 1135999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCccccceeEEeecchhhhhh-CCCHHHHHHHHhhhhcC----------CCC---------------------
Q 012013 233 LIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQVIIG----------SPD--------------------- 280 (473)
Q Consensus 233 l~~~l~~~~~~l~~~~~vVvDEah~l~~-~~~~~~~~~i~~~~~~~----------~~~--------------------- 280 (473)
|.++++...+.|.++.+|||||||+|+| ++|.+++++|+.+.... +++
T Consensus 213 L~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~la 292 (482)
T KOG0335|consen 213 LKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLA 292 (482)
T ss_pred hhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEE
Confidence 9999999999999999999999999999 99999999998762110 110
Q ss_pred ----ccccccceeeEEecCchhhHHHHHHHHHhHh---CCC-----eEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCC
Q 012013 281 ----LKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGS-----RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 348 (473)
Q Consensus 281 ----~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~---~~~-----~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~ 348 (473)
-....++.|.+..+.+..|...|+++|.... ... +++|||.+++.|+.++..|...++++..|||+.+
T Consensus 293 V~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~t 372 (482)
T KOG0335|consen 293 VGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRT 372 (482)
T ss_pred EeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhh
Confidence 0223567788888899999999999998655 233 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHH
Q 012013 349 QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 428 (473)
Q Consensus 349 ~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 428 (473)
+.+|.+.++.|++|.+.|||||++++||+|||+|+|||+||+|.+..+|+|||||+||+|+.|.++.|++..+..+.+.|
T Consensus 373 q~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L 452 (482)
T KOG0335|consen 373 QIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL 452 (482)
T ss_pred hhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHhccCCCCC
Q 012013 429 ITILEEAGQKVSPELAAMGRGAPPS 453 (473)
Q Consensus 429 ~~~l~~~~~~~~~~l~~~~~~~~~~ 453 (473)
.++|.++++++|++|.+|+.....+
T Consensus 453 ~~~l~ea~q~vP~wl~~~~~~~~~~ 477 (482)
T KOG0335|consen 453 VEILTEANQEVPQWLSELSRERELG 477 (482)
T ss_pred HHHHHHhcccCcHHHHhhhhhcccc
Confidence 9999999999999999987765443
No 8
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.1e-66 Score=478.53 Aligned_cols=384 Identities=43% Similarity=0.705 Sum_probs=345.9
Q ss_pred cccCCccccCCCHHHHHHHHHhccceeccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEE
Q 012013 63 FYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGI 142 (473)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~ 142 (473)
.|....-+..+|+++.+..+++..|.+.|+++|.|+.+|.++++|..+++.|++.|+.+|||+|.+.+|.+++|+|+|.+
T Consensus 134 ~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGI 213 (610)
T KOG0341|consen 134 AWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGI 213 (610)
T ss_pred ccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeE
Confidence 34445567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHhHHHHHHHHhcCC---CCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC------CCceEEEEEcCccCc
Q 012013 143 AETGSGKTLAYLLPAIVHVNAQP---FLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS------SKIKSTCIYGGVPKG 213 (473)
Q Consensus 143 a~TGsGKT~~~~l~~l~~~~~~~---~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~------~~~~~~~~~gg~~~~ 213 (473)
|-||||||++|.+|++...+.+. ....+.+|..||+||+|+||.|.++.+..|... ..+++....||.+..
T Consensus 214 AfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~ 293 (610)
T KOG0341|consen 214 AFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVR 293 (610)
T ss_pred EeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHH
Confidence 99999999999999998887653 245677999999999999999999988876432 346788889999999
Q ss_pred cchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhh--------------------
Q 012013 214 PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ-------------------- 273 (473)
Q Consensus 214 ~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~-------------------- 273 (473)
.+...++.+.+|+|+||++|.++|.+...+|.-+.|+.+||||+|.|+||+..++.|+..
T Consensus 294 eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~ 373 (610)
T KOG0341|consen 294 EQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQN 373 (610)
T ss_pred HHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875
Q ss_pred -----------hhcCCCCccccccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEE
Q 012013 274 -----------VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 342 (473)
Q Consensus 274 -----------~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ 342 (473)
++++.+. .++-++.|.++++..+.|.-.|++.|+... .++||||..+..++.++++|--.|..++.
T Consensus 374 FAkSALVKPvtvNVGRAG-AAsldViQevEyVkqEaKiVylLeCLQKT~--PpVLIFaEkK~DVD~IhEYLLlKGVEava 450 (610)
T KOG0341|consen 374 FAKSALVKPVTVNVGRAG-AASLDVIQEVEYVKQEAKIVYLLECLQKTS--PPVLIFAEKKADVDDIHEYLLLKGVEAVA 450 (610)
T ss_pred HHHhhcccceEEeccccc-ccchhHHHHHHHHHhhhhhhhHHHHhccCC--CceEEEeccccChHHHHHHHHHccceeEE
Confidence 1222222 233455666677778888888888887743 48999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccc-c
Q 012013 343 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-N 421 (473)
Q Consensus 343 ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~ 421 (473)
|||+.++++|...++.|+.|+.+||||||+++.|+|+|++.||||||+|..++.|+|||||+||.|++|.+.+|++.+ +
T Consensus 451 IHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 451 IHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred eecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhccC
Q 012013 422 ARFAKELITILEEAGQKVSPELAAMGRG 449 (473)
Q Consensus 422 ~~~~~~l~~~l~~~~~~~~~~l~~~~~~ 449 (473)
...+-+|...|.+++|++|+.|.+++-.
T Consensus 531 esvLlDLK~LL~EakQ~vP~~L~~L~~~ 558 (610)
T KOG0341|consen 531 ESVLLDLKHLLQEAKQEVPPVLAELAGP 558 (610)
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHhCCC
Confidence 6788999999999999999999999743
No 9
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-65 Score=469.98 Aligned_cols=337 Identities=38% Similarity=0.594 Sum_probs=308.5
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEE
Q 012013 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 175 (473)
....+|.++++.+.++++++..++..||++|+++||.++.|+|+|+.|+||||||.+|++|++++++..+. .+.+
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~ 132 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFA 132 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceE
Confidence 35678999999999999999999999999999999999999999999999999999999999999998653 5899
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHH-ccCccccceeEEeecc
Q 012013 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDE 254 (473)
Q Consensus 176 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~-~~~~~l~~~~~vVvDE 254 (473)
||++||||||.|+.+.++.++...++++.++.||.....+...+.+.++|+||||++|++++. ...+++..+.++|+||
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 999999999999999999999999999999999999999999999999999999999999998 5677899999999999
Q ss_pred hhhhhhCCCHHHHHHHHhhhhcC------C------------------------CCccccccceeeEEecCchhhHHHHH
Q 012013 255 ADRMLDMGFEPQIKKILSQVIIG------S------------------------PDLKANHAIRQHVDIVSESQKYNKLV 304 (473)
Q Consensus 255 ah~l~~~~~~~~~~~i~~~~~~~------~------------------------~~~~~~~~i~~~~~~~~~~~k~~~l~ 304 (473)
||+++++.|.+.+.+|+..+... + ........+.|.+..+....|...|+
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV 292 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLV 292 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHH
Confidence 99999999999999998862111 0 01122245667777778888999999
Q ss_pred HHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCE
Q 012013 305 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 384 (473)
Q Consensus 305 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~ 384 (473)
.+|.+.. +..+||||++...++.++-.|+..|+.+..+||.|++..|.-.++.|++|.+.||||||+++||+|||.|++
T Consensus 293 ~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 293 YLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 9998754 478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCC
Q 012013 385 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQK 438 (473)
Q Consensus 385 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 438 (473)
|||||.|.+..+|+||+||++|+|.+|.++.|++..|.+.+..+...+.+...+
T Consensus 372 VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 372 VVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred EEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999998888888888877655
No 10
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-64 Score=518.86 Aligned_cols=397 Identities=47% Similarity=0.791 Sum_probs=371.5
Q ss_pred CCCCCCCCcccccccCCccccCCCHHHHHHHHHhcc-ceeccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHH
Q 012013 51 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQRE-ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQG 129 (473)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~ 129 (473)
......++|+++||.+.+++..|+..++..|+...+ |.+.+.++|.|+.+|.+.++...++..+++.+|.+|+|+|.+|
T Consensus 316 ~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qA 395 (997)
T KOG0334|consen 316 HSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQA 395 (997)
T ss_pred cccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhh
Confidence 445668999999999999999999999999999855 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 012013 130 WPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGG 209 (473)
Q Consensus 130 i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg 209 (473)
||+|++|+++|.+|.||||||++|++|++.++..++.+..++||.+||++||++||.|+.+++.+|...++++++++||+
T Consensus 396 iP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg 475 (997)
T KOG0334|consen 396 IPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGG 475 (997)
T ss_pred cchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchHHhhcCCcEEEeChHHHHHHHHcc---CccccceeEEeecchhhhhhCCCHHHHHHHHhhh------------
Q 012013 210 VPKGPQVRDLQKGVEIVIATPGRLIDMLESH---NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV------------ 274 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~---~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~------------ 274 (473)
.....++..+.++++|+||||+++++++-.+ ..++.++.+||+||||+|++++|.|++..|+..+
T Consensus 476 ~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSat 555 (997)
T KOG0334|consen 476 SGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSAT 555 (997)
T ss_pred ccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhh
Confidence 9999999999999999999999999988654 3467788899999999999999999998887651
Q ss_pred -------------------hcCCCCccccccceeeEEecC-chhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHH
Q 012013 275 -------------------IIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR 334 (473)
Q Consensus 275 -------------------~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~ 334 (473)
+++ ..-.....+.+.+.++. +.+|+..|.++|.+.....++||||.....|+.+.+.|.
T Consensus 556 fpr~m~~la~~vl~~Pveiiv~-~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~ 634 (997)
T KOG0334|consen 556 FPRSMEALARKVLKKPVEIIVG-GRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQ 634 (997)
T ss_pred hhHHHHHHHHHhhcCCeeEEEc-cceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHH
Confidence 111 11133456778888888 899999999999999999999999999999999999999
Q ss_pred hCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEE
Q 012013 335 MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY 414 (473)
Q Consensus 335 ~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 414 (473)
+.++.+..+||+.++.+|..+++.|+++.+.+||||+++++|+|++++.+|||||+|...++|+||.||+||+|+.|.|+
T Consensus 635 ~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~Av 714 (997)
T KOG0334|consen 635 KAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAV 714 (997)
T ss_pred hcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHHHHHhCCCCCHHHHHhcc
Q 012013 415 TFFTAANARFAKELITILEEAGQKVSPELAAMGR 448 (473)
Q Consensus 415 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 448 (473)
+|+++++..++.+|.+.+..+++.+|..|..|+.
T Consensus 715 tFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~ 748 (997)
T KOG0334|consen 715 TFITPDQLKYAGDLCKALELSKQPVPKLLQALSE 748 (997)
T ss_pred EEeChHHhhhHHHHHHHHHhccCCCchHHHHHHH
Confidence 9999999999999999999999999999988864
No 11
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9e-61 Score=485.93 Aligned_cols=335 Identities=39% Similarity=0.683 Sum_probs=289.4
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCC-CCCCCEEEEE
Q 012013 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA-PGDGPIVLVL 178 (473)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vlil 178 (473)
+|++++|++.++++|.+.+|.+|||+|.++|+.+++++|++++||||||||++|++|++..+....... ....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999986543211 1224689999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh
Q 012013 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (473)
Q Consensus 179 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l 258 (473)
+||++||.|+.+.+.++....++.+..++|+.....+...+...++|+|+||++|++++......++++++|||||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988899999999999887777778888999999999999999888888999999999999999
Q ss_pred hhCCCHHHHHHHHhhhh------cCCCCc------------------------cccccceeeEEecCchhhHHHHHHHHH
Q 012013 259 LDMGFEPQIKKILSQVI------IGSPDL------------------------KANHAIRQHVDIVSESQKYNKLVKLLE 308 (473)
Q Consensus 259 ~~~~~~~~~~~i~~~~~------~~~~~~------------------------~~~~~i~~~~~~~~~~~k~~~l~~~l~ 308 (473)
++++|...++.++..+. ..++++ .....+.+.+..+....+...+..++.
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~ 241 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIG 241 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHH
Confidence 99999988888876521 111111 111223444445555555555555554
Q ss_pred hHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEc
Q 012013 309 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 388 (473)
Q Consensus 309 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~ 388 (473)
. ....++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+|
T Consensus 242 ~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 242 K-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred c-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEe
Confidence 3 334589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHh
Q 012013 389 DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 435 (473)
Q Consensus 389 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 435 (473)
++|.++.+|+||+||+||.|..|.+++|++.++...++.+.+.+...
T Consensus 321 ~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred CCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998888888776544
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-61 Score=488.93 Aligned_cols=340 Identities=43% Similarity=0.683 Sum_probs=304.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEE
Q 012013 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (473)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 178 (473)
..|+++++++.+++++.+.+|..|||+|.++||.++.++|+++.|+||||||++|++|+++.+.... .....+ +||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--~~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--ERKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--ccCCCc-eEEE
Confidence 7799999999999999999999999999999999999999999999999999999999999976421 111112 9999
Q ss_pred cCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhh
Q 012013 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (473)
Q Consensus 179 ~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 257 (473)
+||||||.|+++.+.++.... ++++.+++||.+...+...+..+++|+|+||++|++++......+..+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999988 7999999999999999988888899999999999999999999999999999999999
Q ss_pred hhhCCCHHHHHHHHhhhh-------------------------------cCCCC-ccccccceeeEEecCchh-hHHHHH
Q 012013 258 MLDMGFEPQIKKILSQVI-------------------------------IGSPD-LKANHAIRQHVDIVSESQ-KYNKLV 304 (473)
Q Consensus 258 l~~~~~~~~~~~i~~~~~-------------------------------~~~~~-~~~~~~i~~~~~~~~~~~-k~~~l~ 304 (473)
|++++|.+++..|+..+. +.... ......+.|.+..+.... |...|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 999999999999987611 11111 114566778888887765 999999
Q ss_pred HHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCE
Q 012013 305 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 384 (473)
Q Consensus 305 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~ 384 (473)
.++..... .++||||+|+..++.|+..|...|+++..|||++++.+|..+++.|++|+.+||||||+++||||||++++
T Consensus 266 ~ll~~~~~-~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDEDE-GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCCC-CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 98887544 47999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccc-cHHHHHHHHHHHHHh---CCCCCHH
Q 012013 385 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEA---GQKVSPE 442 (473)
Q Consensus 385 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~---~~~~~~~ 442 (473)
|||||+|.+++.|+||+||+||+|..|.++.|+++. +...+..+.+.+... ...+|..
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~ 406 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLD 406 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcc
Confidence 999999999999999999999999999999999986 888888888887665 3355543
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.8e-59 Score=468.33 Aligned_cols=338 Identities=38% Similarity=0.589 Sum_probs=293.4
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCC--CCCCCE
Q 012013 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPI 174 (473)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~ 174 (473)
+..+|++++|++.++++|...||..|+|+|.++||.+++++|++++||||||||++|++|++..+...+... ...+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 346899999999999999999999999999999999999999999999999999999999999987643211 124689
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecc
Q 012013 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (473)
Q Consensus 175 vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDE 254 (473)
+|||+||++||.|+.+.+..+....++++..++||.....+...+..+++|+|+||++|.+++......+.++.+|||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999999998889999999999887777777778899999999999999988888899999999999
Q ss_pred hhhhhhCCCHHHHHHHHhhhh--------cCCCCcc------------------------ccccceeeEEecCchhhHHH
Q 012013 255 ADRMLDMGFEPQIKKILSQVI--------IGSPDLK------------------------ANHAIRQHVDIVSESQKYNK 302 (473)
Q Consensus 255 ah~l~~~~~~~~~~~i~~~~~--------~~~~~~~------------------------~~~~i~~~~~~~~~~~k~~~ 302 (473)
||++++++|...++.++..+. +.++++. ....+.+.+.......|...
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~ 245 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRL 245 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHH
Confidence 999999999999988876521 1111111 11223333444455667777
Q ss_pred HHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 012013 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 382 (473)
Q Consensus 303 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v 382 (473)
|..++... ...++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++
T Consensus 246 l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 246 LQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred HHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 77777653 34689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHh
Q 012013 383 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 435 (473)
Q Consensus 383 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 435 (473)
++||+||+|.++++|+||+||+||.|+.|.|++|+++.+...+..+.+.+...
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred CEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998888877776665544
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.1e-58 Score=475.56 Aligned_cols=336 Identities=40% Similarity=0.643 Sum_probs=290.7
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCC--CCCCCEE
Q 012013 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPIV 175 (473)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~v 175 (473)
..+|++++|++.++++|.+.+|.+|||+|.++||.+++++|++++||||||||++|++|++..+...+... ....+++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 34699999999999999999999999999999999999999999999999999999999999887543211 2235899
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc-CccccceeEEeecc
Q 012013 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDE 254 (473)
Q Consensus 176 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~vVvDE 254 (473)
|||+||++||.|+++.+.+|+...++++..++|+.....+...+..+++|+|+||++|++++... ...+..+++|||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999999999999999999887777777888999999999999998765 45688899999999
Q ss_pred hhhhhhCCCHHHHHHHHhhhh--------cCCCCcc------------------------ccccceeeEEecCchhhHHH
Q 012013 255 ADRMLDMGFEPQIKKILSQVI--------IGSPDLK------------------------ANHAIRQHVDIVSESQKYNK 302 (473)
Q Consensus 255 ah~l~~~~~~~~~~~i~~~~~--------~~~~~~~------------------------~~~~i~~~~~~~~~~~k~~~ 302 (473)
||+|++++|...+..++..+. +.++++. ....+.+.+.......|...
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~ 247 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTL 247 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHH
Confidence 999999999998888865421 1111111 11223444555556677777
Q ss_pred HHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 012013 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 382 (473)
Q Consensus 303 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v 382 (473)
+..++.. ....++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++
T Consensus 248 L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 248 LLGLLSR-SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred HHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 7777765 345689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHH
Q 012013 383 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 434 (473)
Q Consensus 383 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 434 (473)
++||+||.|.++++|+||+||+||.|..|.|++|+++.+...+.++.+.+..
T Consensus 327 ~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 327 KYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred CEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999888777877776544
No 15
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.2e-58 Score=438.73 Aligned_cols=334 Identities=34% Similarity=0.563 Sum_probs=301.1
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEE
Q 012013 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (473)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 176 (473)
+...|++..|++..++++..+||..+|++|..+++.++.++|+++.|.||+|||++|++|++..+...++... .+..+|
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vl 158 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVL 158 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEE
Confidence 4566888999999999999999999999999999999999999999999999999999999999988765433 678899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCc-cccceeEEeecc
Q 012013 177 VLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDE 254 (473)
Q Consensus 177 il~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~vVvDE 254 (473)
||||||+||.|++.+++++.... .+.+..+.||.......+.+..+++|+|+||++|.+++++... ..++++++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999998887 8999999999999888888888999999999999999998643 446678999999
Q ss_pred hhhhhhCCCHHHHHHHHhhhh-----------------------c----------CCCCccccccceeeEEecCchhhHH
Q 012013 255 ADRMLDMGFEPQIKKILSQVI-----------------------I----------GSPDLKANHAIRQHVDIVSESQKYN 301 (473)
Q Consensus 255 ah~l~~~~~~~~~~~i~~~~~-----------------------~----------~~~~~~~~~~i~~~~~~~~~~~k~~ 301 (473)
||++++++|+..++.|+..+. + ........+.+.|.+.++....++.
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 999999999999999987621 0 1112233455677777888888889
Q ss_pred HHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC
Q 012013 302 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 381 (473)
Q Consensus 302 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~ 381 (473)
.+..+|++.....++||||+|...+..+++.|....++|..|||..+|..|..+..+|++.+.-||||||+++||+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 99999999887789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHH
Q 012013 382 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 431 (473)
Q Consensus 382 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 431 (473)
|++||.||+|.++++|+||+||+||.|..|.+++++.+.+..+++.|.++
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~l 448 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKL 448 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999998887776643
No 16
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-58 Score=439.46 Aligned_cols=332 Identities=36% Similarity=0.548 Sum_probs=292.1
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEE
Q 012013 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (473)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 177 (473)
..+|.+++|+..+++++...||..|||+|..+||..+-|+|++.||.||||||.+|++|+|..++..|. .....+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk--~~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK--KVAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc--cCcceeEEE
Confidence 457899999999999999999999999999999999999999999999999999999999999998763 244788999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc-CccccceeEEeecchh
Q 012013 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEAD 256 (473)
Q Consensus 178 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~vVvDEah 256 (473)
|||||+||.|++...+++...+.|.++...||.+...|...++..+||+|+||++|++++.+. .+++.++.++|+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 999999999999999999999999999999999999999999999999999999999999864 6789999999999999
Q ss_pred hhhhCCCHHHHHHHHhhhhcC------CCCc------------------------cccccceeeEEec---CchhhHHHH
Q 012013 257 RMLDMGFEPQIKKILSQVIIG------SPDL------------------------KANHAIRQHVDIV---SESQKYNKL 303 (473)
Q Consensus 257 ~l~~~~~~~~~~~i~~~~~~~------~~~~------------------------~~~~~i~~~~~~~---~~~~k~~~l 303 (473)
+|++.+|..++..|+..+.-. +++. .....+.|.+..+ .+..+-..|
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l 417 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAML 417 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHH
Confidence 999999999999998762111 1110 1111222222211 223445556
Q ss_pred HHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCC
Q 012013 304 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK 383 (473)
Q Consensus 304 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~ 383 (473)
..++.... ..++|||+.|++.|..+.-.|--.|+++.-+||.++|.+|...++.|++.+++||||||+++||+||+.|.
T Consensus 418 ~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~ 496 (691)
T KOG0338|consen 418 ASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQ 496 (691)
T ss_pred HHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcccee
Confidence 66666654 45899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHH
Q 012013 384 YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 432 (473)
Q Consensus 384 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 432 (473)
+||||++|.++..|+||+||+.|+|+.|.+++|+..++.++++.+++.-
T Consensus 497 tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 497 TVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred EEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999888774
No 17
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-58 Score=418.06 Aligned_cols=339 Identities=35% Similarity=0.528 Sum_probs=304.4
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEE
Q 012013 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (473)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 176 (473)
....|+.+++++++.+.|...++.+|||+|..+||.++.|+|++.+|.||||||++|.+|+++.+...| .+-.+|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFal 79 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFAL 79 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEE
Confidence 346799999999999999999999999999999999999999999999999999999999999998865 378899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc----CccccceeEEee
Q 012013 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVL 252 (473)
Q Consensus 177 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~----~~~l~~~~~vVv 252 (473)
|++|||+||.|+.+.|..+++..++++.+++||...-.+...+...++++|+||++|.+++..+ .+.+.++.++|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 9999999999999999999999999999999999998888899999999999999999998876 345788999999
Q ss_pred cchhhhhhCCCHHHHHHHHhhhhcC--------------------------------CCCccccccceeeEEecCchhhH
Q 012013 253 DEADRMLDMGFEPQIKKILSQVIIG--------------------------------SPDLKANHAIRQHVDIVSESQKY 300 (473)
Q Consensus 253 DEah~l~~~~~~~~~~~i~~~~~~~--------------------------------~~~~~~~~~i~~~~~~~~~~~k~ 300 (473)
||||++++..|.++++.+...+... .+..+..+.+.+.+..++...|.
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkd 239 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKD 239 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhH
Confidence 9999999999999998887652111 11223334556666677778888
Q ss_pred HHHHHHHHhHhC--CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCC
Q 012013 301 NKLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 378 (473)
Q Consensus 301 ~~l~~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gid 378 (473)
..|+.+|..... .+.++||+++..+|+.|+..|+...+.+..+|+.|++.+|...+.+|+++..+||||||+++||+|
T Consensus 240 aYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLD 319 (442)
T KOG0340|consen 240 AYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLD 319 (442)
T ss_pred HHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCC
Confidence 899999988766 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCC
Q 012013 379 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVS 440 (473)
Q Consensus 379 i~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 440 (473)
||.|++|||+|.|.+|.+|+||+||+.|+|+.|.++.++++.|.+.+..+.+.+.++-.+.+
T Consensus 320 IP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 320 IPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred CCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999888887777766544433
No 18
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-58 Score=403.97 Aligned_cols=346 Identities=35% Similarity=0.595 Sum_probs=309.4
Q ss_pred CCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCE
Q 012013 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (473)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 174 (473)
-+++.+|+++++.+.+++.+...||.+|..+|+.|++.+++|+|++++|..|+|||.+|.+.+++.+.-.. ....
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~-----r~tQ 97 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV-----RETQ 97 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc-----ceee
Confidence 35678999999999999999999999999999999999999999999999999999999888877665421 2467
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecc
Q 012013 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (473)
Q Consensus 175 vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDE 254 (473)
+||++||||||.|+.+.+..++...++.+..+.||.+..++++.+..+.+++.+||+++.+++.+.....+.+.++|+||
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred hhhhhhCCCHHHHHHHHhhhh------cCCCCc------------------------cccccceeeEEecCchh-hHHHH
Q 012013 255 ADRMLDMGFEPQIKKILSQVI------IGSPDL------------------------KANHAIRQHVDIVSESQ-KYNKL 303 (473)
Q Consensus 255 ah~l~~~~~~~~~~~i~~~~~------~~~~~~------------------------~~~~~i~~~~~~~~~~~-k~~~l 303 (473)
||.|++.+|..++-.++..+. +-++++ ...+.+++++..++.++ |++.|
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH
Confidence 999999999999988877622 111111 11234566666666555 88888
Q ss_pred HHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCC
Q 012013 304 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK 383 (473)
Q Consensus 304 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~ 383 (473)
.++...+.- ...+|||+|+..++.|.+.|++.++.+.++||+|.+++|++++++|++|+.+|||+||+.+||+|+|.|+
T Consensus 258 cdLYd~LtI-tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVs 336 (400)
T KOG0328|consen 258 CDLYDTLTI-TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVS 336 (400)
T ss_pred HHHhhhheh-heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeE
Confidence 888776543 4689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHh
Q 012013 384 YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 446 (473)
Q Consensus 384 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~ 446 (473)
+|||||+|.+.+.|+|||||.||.|++|.++-|+..+|.+.++++.+...-.-.+.|..+.++
T Consensus 337 lviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 337 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred EEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence 999999999999999999999999999999999999999999999999988888888766543
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.8e-56 Score=454.91 Aligned_cols=330 Identities=39% Similarity=0.612 Sum_probs=290.4
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEE
Q 012013 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (473)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 178 (473)
.+|++++|++.+++++.+.+|.+|+|+|.++|+.+++++|++++||||||||++|++|++..+.... ..+++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-----~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-----FRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-----CCceEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999875421 25679999
Q ss_pred cCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhh
Q 012013 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (473)
Q Consensus 179 ~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 257 (473)
+||++||.|+.++++++.... ++++..++||.+...+...+..+++|+|+||++|.+++.+....+.++++||+||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999987543 6889999999998888888888999999999999999998888899999999999999
Q ss_pred hhhCCCHHHHHHHHhhhh------cCCCCc-----------------------cccccceeeEEecCchhhHHHHHHHHH
Q 012013 258 MLDMGFEPQIKKILSQVI------IGSPDL-----------------------KANHAIRQHVDIVSESQKYNKLVKLLE 308 (473)
Q Consensus 258 l~~~~~~~~~~~i~~~~~------~~~~~~-----------------------~~~~~i~~~~~~~~~~~k~~~l~~~l~ 308 (473)
|++++|...+..++..+. +.++++ .....+.+.+..+....|...+..++.
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 238 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLL 238 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHH
Confidence 999999999888876521 111111 111234555666666778888888886
Q ss_pred hHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEc
Q 012013 309 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 388 (473)
Q Consensus 309 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~ 388 (473)
.. ...++||||+++..++.+++.|...++.+..+||++++.+|+.+++.|++|+.+|||||+++++|||+|++++||+|
T Consensus 239 ~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~ 317 (460)
T PRK11776 239 HH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINY 317 (460)
T ss_pred hc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEe
Confidence 54 34689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHH
Q 012013 389 DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 434 (473)
Q Consensus 389 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 434 (473)
|+|.++..|+||+||+||.|..|.|++|+++.+...+..+.+.+..
T Consensus 318 d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 318 ELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred cCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999988777777666543
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-56 Score=422.20 Aligned_cols=325 Identities=33% Similarity=0.556 Sum_probs=279.6
Q ss_pred CCcccCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEE
Q 012013 99 KSFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (473)
Q Consensus 99 ~~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 176 (473)
..|++++ |++++++++...||..+||+|..+||.++.++|+++.|+||||||++|++|++..+.......+....-+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3566665 45999999999999999999999999999999999999999999999999999999654332222234689
Q ss_pred EEcCcHHHHHHHHHHHHHhccC-CCceEEEEEcCccCccchHHhh-cCCcEEEeChHHHHHHHHccCc--cccceeEEee
Q 012013 177 VLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNT--NLRRVTYLVL 252 (473)
Q Consensus 177 il~Pt~~La~q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~--~l~~~~~vVv 252 (473)
||+||||||.|+.+.+..|... .++.+.++.||.....++..+. .+++|+|+||++|.+++++... ++++++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988765 6788999999988877776664 5788999999999999998544 3459999999
Q ss_pred cchhhhhhCCCHHHHHHHHhhh-------------------------------hcCCCC-ccccccceeeEEecCchhhH
Q 012013 253 DEADRMLDMGFEPQIKKILSQV-------------------------------IIGSPD-LKANHAIRQHVDIVSESQKY 300 (473)
Q Consensus 253 DEah~l~~~~~~~~~~~i~~~~-------------------------------~~~~~~-~~~~~~i~~~~~~~~~~~k~ 300 (473)
||||++++++|..++..|+..+ .+.... ......+...+.++....|.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 9999999999999999998761 111111 01334466677888999999
Q ss_pred HHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCC
Q 012013 301 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 378 (473)
Q Consensus 301 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gid 378 (473)
..++++|... ...++|||.+|...++.....|... ...+..+||.|.+..|..+++.|.+....+|+|||+++||||
T Consensus 244 ~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 244 SQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 9999999884 4579999999999999999988654 677999999999999999999999988889999999999999
Q ss_pred CCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHH
Q 012013 379 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 424 (473)
Q Consensus 379 i~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 424 (473)
||++++||+||+|.+++.|+||+||++|+|+.|.+++|+.+.+..+
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHH
Confidence 9999999999999999999999999999999999999999965543
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.4e-55 Score=447.09 Aligned_cols=334 Identities=36% Similarity=0.608 Sum_probs=288.9
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 012013 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (473)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 179 (473)
+|+++++++.+++.|.+.||.+|+++|.++|+.++.++|++++||||+|||++|++|++.++...+. .....+++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-RKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCceEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999876432 122357899999
Q ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhh
Q 012013 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (473)
Q Consensus 180 Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~ 259 (473)
||++||.|+.+.+..+....++.+..++|+.....+...+..+++|+|+||++|++++....+.+.++++|||||||+|+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999999889999999999998877777777889999999999999999888888999999999999999
Q ss_pred hCCCHHHHHHHHhhh------hcCCCCc-------------------------cccccceeeEEecC-chhhHHHHHHHH
Q 012013 260 DMGFEPQIKKILSQV------IIGSPDL-------------------------KANHAIRQHVDIVS-ESQKYNKLVKLL 307 (473)
Q Consensus 260 ~~~~~~~~~~i~~~~------~~~~~~~-------------------------~~~~~i~~~~~~~~-~~~k~~~l~~~l 307 (473)
+++|...+..+.... .+.++++ .....+.+.+.... ...|...|..++
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 240 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLL 240 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 999999988886531 1111111 11122333333333 345666666666
Q ss_pred HhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEE
Q 012013 308 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387 (473)
Q Consensus 308 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~ 387 (473)
.. ....++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 241 ~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~ 319 (434)
T PRK11192 241 KQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN 319 (434)
T ss_pred hc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE
Confidence 54 24468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHh
Q 012013 388 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 435 (473)
Q Consensus 388 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 435 (473)
||+|.+...|+||+||+||.|..|.+++|++..|...+..+.+.+.+.
T Consensus 320 ~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 320 FDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred ECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999988888888766543
No 22
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=8.3e-56 Score=459.86 Aligned_cols=327 Identities=39% Similarity=0.646 Sum_probs=283.9
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEE
Q 012013 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (473)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 177 (473)
..+|++++|++.++++|.+.||.+|+|+|.++|+.+++++++|++||||+|||++|++|++..+... ...+++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 4569999999999999999999999999999999999999999999999999999999999887542 23578999
Q ss_pred EcCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchh
Q 012013 178 LAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (473)
Q Consensus 178 l~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 256 (473)
|+||++||.|+++.+.++.... ++.++.++||.....+...+..+++|+|+||++|++++.+....++++.+|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999986554 688999999988877888888889999999999999999888889999999999999
Q ss_pred hhhhCCCHHHHHHHHhhhh------cCCCCc------------------------cccccceeeEEecCchhhHHHHHHH
Q 012013 257 RMLDMGFEPQIKKILSQVI------IGSPDL------------------------KANHAIRQHVDIVSESQKYNKLVKL 306 (473)
Q Consensus 257 ~l~~~~~~~~~~~i~~~~~------~~~~~~------------------------~~~~~i~~~~~~~~~~~k~~~l~~~ 306 (473)
.|++++|...+..++..+. +.++++ .....+.+.+..+....|...|..+
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~ 239 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHH
Confidence 9999999999988876521 111111 0112233444445556777888888
Q ss_pred HHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEE
Q 012013 307 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 386 (473)
Q Consensus 307 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi 386 (473)
+... ...++||||+++..++.+++.|...++.+..+||++++.+|+.+++.|++|+++|||||+++++|||+|++++||
T Consensus 240 L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI 318 (629)
T PRK11634 240 LEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVV 318 (629)
T ss_pred HHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEE
Confidence 7653 345899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHH
Q 012013 387 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 430 (473)
Q Consensus 387 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 430 (473)
+||+|.++++|+||+||+||.|+.|.+++|+++.+...++.+.+
T Consensus 319 ~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~ 362 (629)
T PRK11634 319 NYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 (629)
T ss_pred EeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHH
Confidence 99999999999999999999999999999999876655555433
No 23
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-54 Score=443.00 Aligned_cols=348 Identities=37% Similarity=0.553 Sum_probs=297.3
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCC--CCCCE
Q 012013 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAP--GDGPI 174 (473)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~--~~~~~ 174 (473)
....|.++++++.+.++|.+.||.+|+++|.++|+.+++|+|+|+++|||||||++|++|++..+...+.... ...++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 3567899999999999999999999999999999999999999999999999999999999999876532111 12578
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhh-cCCcEEEeChHHHHHHHHccCccccceeEEeec
Q 012013 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (473)
Q Consensus 175 vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvD 253 (473)
+|||+||++||.|+.+.++.+....++.+..++||.....+.+.+. ..++|+|+||++|++++......++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999999999998888899999999987766666654 468999999999999998888889999999999
Q ss_pred chhhhhhCCCHHHHHHHHhhhh--------cCCCCc------------------------cccccceeeEEecCchhhHH
Q 012013 254 EADRMLDMGFEPQIKKILSQVI--------IGSPDL------------------------KANHAIRQHVDIVSESQKYN 301 (473)
Q Consensus 254 Eah~l~~~~~~~~~~~i~~~~~--------~~~~~~------------------------~~~~~i~~~~~~~~~~~k~~ 301 (473)
|||++++++|.+.++.++..+. ..++++ .....+.+.+..+....|..
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~ 324 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYK 324 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHH
Confidence 9999999999999988876521 111111 11123445555566667777
Q ss_pred HHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC
Q 012013 302 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 381 (473)
Q Consensus 302 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~ 381 (473)
.+..++... ...++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+++|||||+++++|||||+
T Consensus 325 ~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~ 403 (475)
T PRK01297 325 LLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDG 403 (475)
T ss_pred HHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccC
Confidence 777777653 3458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhC--CCCCHHHHH
Q 012013 382 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG--QKVSPELAA 445 (473)
Q Consensus 382 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~l~~ 445 (473)
+++||+|++|.|+.+|+||+||+||.|.+|.+++|+..+|...+..+.+++.... ...|.+|..
T Consensus 404 v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 404 ISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred CCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 9999999999999999999999999999999999999998888888877776553 334556554
No 24
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-55 Score=417.43 Aligned_cols=336 Identities=36% Similarity=0.576 Sum_probs=285.5
Q ss_pred CccCCcccCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcC-CCCCCCCCC
Q 012013 96 KPVKSFRDVGFPDYVMQEIS-KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQ-PFLAPGDGP 173 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~-~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~-~~~~~~~~~ 173 (473)
-.-..|..++|++.+.+.|. .+++..||.+|+++||.+++++|+++.++||||||++|++|+++.+... +.....+|+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 33566899999999999997 5899999999999999999999999999999999999999999999765 445567799
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc-CccccceeEEe
Q 012013 174 IVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLV 251 (473)
Q Consensus 174 ~vlil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~vV 251 (473)
.+||++||||||.|+++.+.++...+ .|..+.+.||.....+...++.+++|+|+||++|+|++.+- .+.++++.|||
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 99999999999999999999987654 45557788999988889999999999999999999999874 45678899999
Q ss_pred ecchhhhhhCCCHHHHHHHHhhh------------------------------------------hcC-----C------
Q 012013 252 LDEADRMLDMGFEPQIKKILSQV------------------------------------------IIG-----S------ 278 (473)
Q Consensus 252 vDEah~l~~~~~~~~~~~i~~~~------------------------------------------~~~-----~------ 278 (473)
|||+|+++++||+..+..|+..+ .+. +
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 99999999999999999987751 111 0
Q ss_pred ---------------CCccccccceeeEEecCchhhHHHHHHHHHhHhC---CCeEEEEeCChHHHHHHHHHHHhC----
Q 012013 279 ---------------PDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMD---GSRILIFMDTKKGCDQITRQLRMD---- 336 (473)
Q Consensus 279 ---------------~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~---- 336 (473)
......+.+.|.+.++...-++-.|..+|..... ..++|||+.+.+.++.-++.|...
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~ 452 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSH 452 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcc
Confidence 0011223445566666666667777777765543 448999999999999888877431
Q ss_pred ------------------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHH
Q 012013 337 ------------------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 398 (473)
Q Consensus 337 ------------------~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~ 398 (473)
+.+++.+||+|+|++|..+++.|...+..||+|||+++||+|+|+|.+||.||+|.++++|+
T Consensus 453 ~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adyl 532 (708)
T KOG0348|consen 453 LEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYL 532 (708)
T ss_pred cccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCCcEEEEEeccccHHHHHHHHHH
Q 012013 399 HRIGRTGRAGAKGTAYTFFTAANARFAKELITI 431 (473)
Q Consensus 399 Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 431 (473)
||+||+.|+|..|.+++|+.+.+..+++.|...
T Consensus 533 HRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 533 HRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999998866555443
No 25
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-55 Score=421.05 Aligned_cols=346 Identities=32% Similarity=0.547 Sum_probs=300.9
Q ss_pred CCHHHHHHHHHhc-cceeccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhH
Q 012013 73 MSEREVEEYRQQR-EITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 73 ~~~~~~~~~~~~~-~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~ 151 (473)
..+++++++...+ ++. ...+..|.+++|+...++.|...+|..||.+|+++||..++|+|++..|.||||||+
T Consensus 48 ~Eee~i~~l~~ky~ei~------~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTL 121 (758)
T KOG0343|consen 48 QEEEEIEELKQKYAEID------STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTL 121 (758)
T ss_pred hhHHHHHHHHHHHHHhh------hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCcee
Confidence 3455555555542 222 234678999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChH
Q 012013 152 AYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPG 231 (473)
Q Consensus 152 ~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~ 231 (473)
+|++|+|..+....+ ...+|--+|||+||||||.|+.+.+.+.++...+....+.||.........+ ..++|+||||+
T Consensus 122 AFlvPvlE~L~r~kW-s~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPG 199 (758)
T KOG0343|consen 122 AFLVPVLEALYRLKW-SPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPG 199 (758)
T ss_pred eehHHHHHHHHHcCC-CCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechH
Confidence 999999999987654 3455778999999999999999999999999999999999998865554444 45899999999
Q ss_pred HHHHHHHcc-CccccceeEEeecchhhhhhCCCHHHHHHHHhhh-----------------------hcC---------C
Q 012013 232 RLIDMLESH-NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV-----------------------IIG---------S 278 (473)
Q Consensus 232 ~l~~~l~~~-~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~-----------------------~~~---------~ 278 (473)
+|+.++... .++..++.++|+||||+|++|||...+..|+..+ .+. .
T Consensus 200 RLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~ 279 (758)
T KOG0343|consen 200 RLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHEN 279 (758)
T ss_pred HHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEecc
Confidence 999998754 5567889999999999999999999999998761 111 1
Q ss_pred CCccccccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHh--CCCCeEEecCCCCHHHHHHHH
Q 012013 279 PDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM--DGWPALSIHGDKSQAERDWVL 356 (473)
Q Consensus 279 ~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~~ihg~~~~~~r~~~~ 356 (473)
.......++.|.+.++....|++.|..++..+.. .++|||+.|.+++..+++.+++ .|+++..+||.|+|..|..++
T Consensus 280 a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk-~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~ 358 (758)
T KOG0343|consen 280 AVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLK-KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVY 358 (758)
T ss_pred ccccChhhhhheEEEEehhhHHHHHHHHHHhccc-cceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHH
Confidence 2234456788999999999999999999998765 5899999999999999999975 588999999999999999999
Q ss_pred HHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccH-HHHHH
Q 012013 357 SEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA-RFAKE 427 (473)
Q Consensus 357 ~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~-~~~~~ 427 (473)
.+|.....-||+|||+++||+|+|.|++||.+|+|.++++|+||+||+.|.+..|.+++++++.+. .++..
T Consensus 359 ~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~ 430 (758)
T KOG0343|consen 359 KKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKK 430 (758)
T ss_pred HHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999874 33333
No 26
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-55 Score=394.02 Aligned_cols=340 Identities=30% Similarity=0.522 Sum_probs=307.3
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEE
Q 012013 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (473)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 177 (473)
-..|+++.|...++..+.+.||.+|.|+|.++||.++.|+|+++-|..|+|||.+|++|++..+.... ..-.++|
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~-----~~IQ~~i 158 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK-----NVIQAII 158 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc-----cceeEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999886532 3567999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhh
Q 012013 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (473)
Q Consensus 178 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 257 (473)
++||||||.|+.+.+.++++..++.+.+.+||++...++-.+....+++|+||++++++..+....++++.++|+||||.
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK 238 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred hhhCCCHHHHHHHHhhh------hcCCCCc-----------------------cccccceeeEEecCchhhHHHHHHHHH
Q 012013 258 MLDMGFEPQIKKILSQV------IIGSPDL-----------------------KANHAIRQHVDIVSESQKYNKLVKLLE 308 (473)
Q Consensus 258 l~~~~~~~~~~~i~~~~------~~~~~~~-----------------------~~~~~i~~~~~~~~~~~k~~~l~~~l~ 308 (473)
+++..|.+.+..++..+ .+-++++ .....+.|++..+.+..|...|..++.
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfs 318 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFS 318 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHH
Confidence 99999999999988752 1111111 122457788889999999998888877
Q ss_pred hHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEc
Q 012013 309 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 388 (473)
Q Consensus 309 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~ 388 (473)
.+.- ...||||++...++.++..+.+.|+.|..+|+.|.++.|..++..|++|.++.|||||.+.||||++++++||||
T Consensus 319 kLqI-NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINF 397 (459)
T KOG0326|consen 319 KLQI-NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINF 397 (459)
T ss_pred Hhcc-cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEec
Confidence 7544 468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCCHHH
Q 012013 389 DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPEL 443 (473)
Q Consensus 389 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l 443 (473)
|+|.++++|+||+||.||.|..|.++.+++..|...+..+.+.|...-.++|+.+
T Consensus 398 Dfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 398 DFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred CCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 9999999999999999999999999999999998888887777777777777543
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-53 Score=396.14 Aligned_cols=337 Identities=31% Similarity=0.503 Sum_probs=296.3
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCC-CCCCCCEEEE
Q 012013 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-APGDGPIVLV 177 (473)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~vli 177 (473)
.+|++++|++.+++++.+.|+.+||-+|..+||.++.|+|+++.|.||||||.+|++|+++.++..... ....++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999876543 3445899999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCC--ceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccC-ccccceeEEeecc
Q 012013 178 LAPTRELAVQIQQESTKFGASSK--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN-TNLRRVTYLVLDE 254 (473)
Q Consensus 178 l~Pt~~La~q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~l~~~~~vVvDE 254 (473)
++||+|||.|++..+.++...+. ++++-+.+..+.......+...++|+|+||++++.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999988754433 55555555555555556667789999999999999999876 6788899999999
Q ss_pred hhhhhhCCCHHHHHHHHhh-------------------------------hhcCCCCccccccceeeEEecCchhhHHHH
Q 012013 255 ADRMLDMGFEPQIKKILSQ-------------------------------VIIGSPDLKANHAIRQHVDIVSESQKYNKL 303 (473)
Q Consensus 255 ah~l~~~~~~~~~~~i~~~-------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 303 (473)
||.++..||++.++.+... +.+...++.....+.|+...|.+.+|+..+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 9999999999999998765 122334445557788888899999999999
Q ss_pred HHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc-----------
Q 012013 304 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV----------- 372 (473)
Q Consensus 304 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~----------- 372 (473)
..+++...-.+++|||+|+++.|..|.-.|++.|++..+++|.++...|..++++|+.|-++|+||||.
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~ 338 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEV 338 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccc
Confidence 999988777789999999999999999999999999999999999999999999999999999999982
Q ss_pred ------------------------cccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHH
Q 012013 373 ------------------------AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 428 (473)
Q Consensus 373 ------------------------~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 428 (473)
++||||+.+|..|+|||+|.++..|+||+||++|.+++|.++.|+.+.+......|
T Consensus 339 kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 339 KGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred cccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHH
Confidence 25899999999999999999999999999999999999999999999988766666
Q ss_pred HHHHHHh
Q 012013 429 ITILEEA 435 (473)
Q Consensus 429 ~~~l~~~ 435 (473)
..++...
T Consensus 419 e~~~~d~ 425 (569)
T KOG0346|consen 419 ESILKDE 425 (569)
T ss_pred HHHHhhH
Confidence 6666553
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.8e-52 Score=417.46 Aligned_cols=338 Identities=33% Similarity=0.575 Sum_probs=283.6
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEE
Q 012013 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (473)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 176 (473)
...+|+++++++.+.+++.+.+|.+|+|+|.++|+.++++++++++||||||||++|++|++..+... ..++++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~l 100 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQAL 100 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEE
Confidence 35789999999999999999999999999999999999999999999999999999999999887532 1367899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchh
Q 012013 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (473)
Q Consensus 177 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 256 (473)
|++||++|+.|+.+.+..++....+.+..+.|+.....+...+..+++|+|+||++|.+++......++++++||+||||
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 99999999999999999998887888888888887766777777788999999999999998877788999999999999
Q ss_pred hhhhCCCHHHHHHHHhhhh------cCCCCcc------------------------ccccceeeEEecCc-hhhHHHHHH
Q 012013 257 RMLDMGFEPQIKKILSQVI------IGSPDLK------------------------ANHAIRQHVDIVSE-SQKYNKLVK 305 (473)
Q Consensus 257 ~l~~~~~~~~~~~i~~~~~------~~~~~~~------------------------~~~~i~~~~~~~~~-~~k~~~l~~ 305 (473)
++++.+|...+..++.... ..++++. ....+.+.+..... ..+...+..
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHH
Confidence 9999999887777765421 1111110 01112222222222 234455555
Q ss_pred HHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEE
Q 012013 306 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 385 (473)
Q Consensus 306 ~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~V 385 (473)
++... ...++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++|
T Consensus 261 ~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~V 339 (401)
T PTZ00424 261 LYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLV 339 (401)
T ss_pred HHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEE
Confidence 55442 34589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCC
Q 012013 386 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVS 440 (473)
Q Consensus 386 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 440 (473)
|++|+|.+..+|+||+||+||.|..|.|++|+++++...+..+.+.+...-++.+
T Consensus 340 I~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 340 INYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred EEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 9999999999999999999999999999999999888877777666654444444
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-54 Score=412.86 Aligned_cols=343 Identities=34% Similarity=0.488 Sum_probs=284.2
Q ss_pred CCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEEccCCCChhHHhHHHHHHHHhcCCCC------
Q 012013 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFL------ 167 (473)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~------ 167 (473)
+..+..|..+.+|..++.+|...||..||++|...+|.+..+ .|++..|.||||||++|-+|++..+......
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 445778999999999999999999999999999999999998 6999999999999999999999955432111
Q ss_pred --CCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCc---
Q 012013 168 --APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--- 242 (473)
Q Consensus 168 --~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~--- 242 (473)
.....+..||++||||||.|+.+-+......+++++..++||.....|.+.+...++|||+||++||.+++.+..
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 111234599999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cccceeEEeecchhhhhhCCCHHHHHHHHhhhhcC-----------CCCccccc--cceee----EEecCchhhHHHHH-
Q 012013 243 NLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIG-----------SPDLKANH--AIRQH----VDIVSESQKYNKLV- 304 (473)
Q Consensus 243 ~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~--~i~~~----~~~~~~~~k~~~l~- 304 (473)
+++++.++|+||+|+|++.|+...+..|+..+.-. ++++.... .+... ........+++.|+
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 56788999999999999999999999998864411 11110000 00000 00000111122111
Q ss_pred ------------------------HHHHhHh--------------CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCC
Q 012013 305 ------------------------KLLEDIM--------------DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 346 (473)
Q Consensus 305 ------------------------~~l~~~~--------------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~ 346 (473)
+-+-+.. -.+++|||||+++.+..|+-.|...+++...+|+.
T Consensus 417 ~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~ 496 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHAS 496 (731)
T ss_pred HhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHH
Confidence 1111100 24689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHH
Q 012013 347 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 426 (473)
Q Consensus 347 ~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 426 (473)
|.|.+|.+.+++|+.....||||||+++||+|||.|.|||||-.|.+.+.|+||.||+.|++..|..++++.+.+...+.
T Consensus 497 M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~ 576 (731)
T KOG0347|consen 497 MIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLK 576 (731)
T ss_pred HHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 012013 427 ELITILEEAGQ 437 (473)
Q Consensus 427 ~l~~~l~~~~~ 437 (473)
.|+.-|+....
T Consensus 577 KL~ktL~k~~d 587 (731)
T KOG0347|consen 577 KLCKTLKKKED 587 (731)
T ss_pred HHHHHHhhccC
Confidence 99998887543
No 30
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-52 Score=400.56 Aligned_cols=367 Identities=34% Similarity=0.534 Sum_probs=309.4
Q ss_pred HHHhccceeccCCCCCccCCccc----CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHH
Q 012013 81 YRQQREITVEGRDVPKPVKSFRD----VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLP 156 (473)
Q Consensus 81 ~~~~~~i~~~~~~~p~~~~~f~~----~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~ 156 (473)
.++.+.+.+.|.++|.|+.+|.+ ....+.+++.+...+|..|+|+|.+|+|.++..+++++|||||||||++|.+|
T Consensus 114 ~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~P 193 (593)
T KOG0344|consen 114 IRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLP 193 (593)
T ss_pred chhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhH
Confidence 34456788899999999999998 46889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc--cCCCceEEEEEcCccCc-cchHHhhcCCcEEEeChHHH
Q 012013 157 AIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG--ASSKIKSTCIYGGVPKG-PQVRDLQKGVEIVIATPGRL 233 (473)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~--~~~~~~~~~~~gg~~~~-~~~~~~~~~~~Iiv~Tp~~l 233 (473)
++.++..........+-+++|+.||++||.|++.++.++. ....+++..+....... .........++|+|.||-++
T Consensus 194 il~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri 273 (593)
T KOG0344|consen 194 ILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRI 273 (593)
T ss_pred HHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHH
Confidence 9999987543333457889999999999999999999998 55555554443332221 12222334579999999999
Q ss_pred HHHHHccC--ccccceeEEeecchhhhhhC-CCHHHHHHHHhhhhcC-------CCCc----------------------
Q 012013 234 IDMLESHN--TNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQVIIG-------SPDL---------------------- 281 (473)
Q Consensus 234 ~~~l~~~~--~~l~~~~~vVvDEah~l~~~-~~~~~~~~i~~~~~~~-------~~~~---------------------- 281 (473)
...+.... ..++.+.++|+||+|++++. .|..|+..|+..+... +++.
T Consensus 274 ~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~ 353 (593)
T KOG0344|consen 274 VGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGL 353 (593)
T ss_pred HHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEec
Confidence 99888765 57899999999999999999 8999999988762211 1110
Q ss_pred --cccccceeeE-EecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHH-HhCCCCeEEecCCCCHHHHHHHHH
Q 012013 282 --KANHAIRQHV-DIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL-RMDGWPALSIHGDKSQAERDWVLS 357 (473)
Q Consensus 282 --~~~~~i~~~~-~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L-~~~~~~~~~ihg~~~~~~r~~~~~ 357 (473)
.+...+.|.. ....+..|+-.+.+++....+ .++|||+++.+.|..|...| ...++.+.++||..++.+|++.++
T Consensus 354 ~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~-PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344|consen 354 RNSANETVDQELVFCGSEKGKLLALRQLVASGFK-PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETME 432 (593)
T ss_pred chhHhhhhhhhheeeecchhHHHHHHHHHhccCC-CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHH
Confidence 1122233332 233456777788888777644 48999999999999999999 678899999999999999999999
Q ss_pred HHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCC
Q 012013 358 EFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 437 (473)
Q Consensus 358 ~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 437 (473)
+|+.|++.|||||+++++|+|+.++++|||||.|.+..+|+||+||+||+|+.|.+++||+..+...++.+.+.++..+-
T Consensus 433 ~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~ 512 (593)
T KOG0344|consen 433 RFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGC 512 (593)
T ss_pred HHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHhcc
Q 012013 438 KVSPELAAMGR 448 (473)
Q Consensus 438 ~~~~~l~~~~~ 448 (473)
++|.+++.|..
T Consensus 513 evpe~~m~~~k 523 (593)
T KOG0344|consen 513 EVPEKIMGIKK 523 (593)
T ss_pred cchHHHHhhhh
Confidence 99999988874
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-49 Score=360.38 Aligned_cols=342 Identities=29% Similarity=0.492 Sum_probs=277.7
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCC
Q 012013 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 173 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 173 (473)
....+|+++.|.+++++.+..++|.+|+.+|..|+|.++.. +++|.++..|+|||.+|.+.+|.+.... ...|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VVVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----ccCC
Confidence 35788999999999999999999999999999999999975 7999999999999999999999887653 2368
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHc-cCccccceeEEee
Q 012013 174 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVL 252 (473)
Q Consensus 174 ~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~vVv 252 (473)
.+++|+|||+||.|+-+.+.+.++..++......-+.... .-+. -..+|+|+||+.+.+++.. ....+..+.++|+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~-rG~~--i~eqIviGTPGtv~Dlm~klk~id~~kikvfVl 238 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK-RGNK--LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVL 238 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc-cCCc--chhheeeCCCccHHHHHHHHHhhChhhceEEEe
Confidence 8999999999999999999999988877776665554211 1111 1248999999999999887 6667889999999
Q ss_pred cchhhhhh-CCCHHHHHHHHhh-------------------------------hhcCCCCccccccceeeEEecC-chhh
Q 012013 253 DEADRMLD-MGFEPQIKKILSQ-------------------------------VIIGSPDLKANHAIRQHVDIVS-ESQK 299 (473)
Q Consensus 253 DEah~l~~-~~~~~~~~~i~~~-------------------------------~~~~~~~~~~~~~i~~~~~~~~-~~~k 299 (473)
||||.|++ .||.++-..|... +.+...+ ....+++|.+..|. ...|
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~ee-l~L~~IkQlyv~C~~~~~K 317 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREE-LALDNIKQLYVLCACRDDK 317 (477)
T ss_pred cchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhh-ccccchhhheeeccchhhH
Confidence 99999876 3555544444332 1111122 22345666665554 5678
Q ss_pred HHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCC
Q 012013 300 YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 379 (473)
Q Consensus 300 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi 379 (473)
++.|.++... ..-+..||||.|++.+..|+..|...|+.+.++||+|...+|..++++|+.|..+|||+|++++||||+
T Consensus 318 ~~~l~~lyg~-~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv 396 (477)
T KOG0332|consen 318 YQALVNLYGL-LTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDV 396 (477)
T ss_pred HHHHHHHHhh-hhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhccccc
Confidence 8888885544 344578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCC------CHHHHHHhhccccCCCCCcEEEEEeccc-cHHHHHHHHHHHHH-hCCCCCHHHHHhc
Q 012013 380 KDVKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEE-AGQKVSPELAAMG 447 (473)
Q Consensus 380 ~~v~~Vi~~~~p~------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~-~~~~~~~~l~~~~ 447 (473)
+.|++|||||+|. +++.|+|||||+||.|+.|.++-|+... ..+.+..+.+.... -....|+.+.++.
T Consensus 397 ~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~e 472 (477)
T KOG0332|consen 397 AQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDELE 472 (477)
T ss_pred ceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHHH
Confidence 9999999999985 7899999999999999999999998875 45666677777643 3445556666553
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.1e-47 Score=406.58 Aligned_cols=303 Identities=21% Similarity=0.318 Sum_probs=239.3
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 012013 105 GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (473)
Q Consensus 105 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~L 184 (473)
.+++.+.++|.+.||.+|+++|.++|+.+++|+|+++++|||||||++|++|++..+...+ ++++|||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~------~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP------RATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC------CcEEEEEcChHHH
Confidence 4889999999999999999999999999999999999999999999999999999987642 6789999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc----CccccceeEEeecchhhhhh
Q 012013 185 AVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLDEADRMLD 260 (473)
Q Consensus 185 a~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~----~~~l~~~~~vVvDEah~l~~ 260 (473)
|.|+.+.++++. ..++++..+.|+.+ ..+...+..+++|+|+||++|...+... ...++++++|||||||.+.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 44677776666655 3444556677899999999987543221 12378899999999999876
Q ss_pred CCCHHHHHHHHhh-------------hhcCCCCccccc---------------------cceeeEEecCc----------
Q 012013 261 MGFEPQIKKILSQ-------------VIIGSPDLKANH---------------------AIRQHVDIVSE---------- 296 (473)
Q Consensus 261 ~~~~~~~~~i~~~-------------~~~~~~~~~~~~---------------------~i~~~~~~~~~---------- 296 (473)
.|...+..++.. +...++++.... ...+.......
T Consensus 172 -~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 250 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGA 250 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCcccccccccc
Confidence 366655444332 111122211100 00011110010
Q ss_pred -------hhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhC--------CCCeEEecCCCCHHHHHHHHHHHhc
Q 012013 297 -------SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--------GWPALSIHGDKSQAERDWVLSEFKA 361 (473)
Q Consensus 297 -------~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--------~~~~~~ihg~~~~~~r~~~~~~f~~ 361 (473)
..+...+.+++. .+.++||||+|++.++.++..|+.. +..+..+||++++++|.+++++|++
T Consensus 251 ~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~ 327 (742)
T TIGR03817 251 PVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD 327 (742)
T ss_pred ccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc
Confidence 122233333333 3569999999999999999988653 5678899999999999999999999
Q ss_pred CCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEecc
Q 012013 362 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA 419 (473)
Q Consensus 362 g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 419 (473)
|++++||||+++++||||+++++||++++|.++++|+||+||+||.|+.|.++++...
T Consensus 328 G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 328 GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999998864
No 33
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-48 Score=367.79 Aligned_cols=322 Identities=30% Similarity=0.472 Sum_probs=260.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhc---------CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEE
Q 012013 108 DYVMQEISKAGFFEPTPIQAQGWPMALK---------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (473)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~Q~~~i~~i~~---------~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 178 (473)
..+...+.++++....|+|...+|+++. .+|+++.||||||||++|.+|+++.+...+ .+.-++|||
T Consensus 146 a~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~----v~~LRavVi 221 (620)
T KOG0350|consen 146 ATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP----VKRLRAVVI 221 (620)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC----ccceEEEEE
Confidence 3445568899999999999999999863 479999999999999999999999987753 335789999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcC-----CcEEEeChHHHHHHHHc-cCccccceeEEee
Q 012013 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG-----VEIVIATPGRLIDMLES-HNTNLRRVTYLVL 252 (473)
Q Consensus 179 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-----~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~vVv 252 (473)
+||++|+.|+++.|.++....++.|+.+.|..+.......+... .||+|+||++|++++.+ ..++|+++.++||
T Consensus 222 vPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVI 301 (620)
T KOG0350|consen 222 VPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVI 301 (620)
T ss_pred eeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEe
Confidence 99999999999999999999999988888877776666665442 48999999999999984 5678999999999
Q ss_pred cchhhhhhCCCHHHHHHHHhhhhcC-----------------------------C-----------CCcc----------
Q 012013 253 DEADRMLDMGFEPQIKKILSQVIIG-----------------------------S-----------PDLK---------- 282 (473)
Q Consensus 253 DEah~l~~~~~~~~~~~i~~~~~~~-----------------------------~-----------~~~~---------- 282 (473)
||||||++..|..++-.+...+... . ..+.
T Consensus 302 DEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~ 381 (620)
T KOG0350|consen 302 DEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLT 381 (620)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhh
Confidence 9999999988887776665441000 0 0000
Q ss_pred ------------------ccccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHH----hCCCCe
Q 012013 283 ------------------ANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR----MDGWPA 340 (473)
Q Consensus 283 ------------------~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~----~~~~~~ 340 (473)
....+.+...+++...|...+..++.. ....++|+|+++.+.+..++..|+ +.++++
T Consensus 382 l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~-~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~ 460 (620)
T KOG0350|consen 382 LHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS-NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKV 460 (620)
T ss_pred cCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHH-hhcceEEEEecchHHHHHHHHHHHHHhccccchh
Confidence 000011111122222344445555544 344589999999999999998886 456777
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccc
Q 012013 341 LSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 420 (473)
Q Consensus 341 ~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 420 (473)
-.+.|.++...|.+++..|.+|.++||||+|+++||+|+.+++.|||||+|.+..+|+||+||++|+|+.|.|+.++...
T Consensus 461 s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~ 540 (620)
T KOG0350|consen 461 SEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKH 540 (620)
T ss_pred hhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHH
Q 012013 421 NARFAKELITILEE 434 (473)
Q Consensus 421 ~~~~~~~l~~~l~~ 434 (473)
+.+.+.++++....
T Consensus 541 ~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 541 EKRLFSKLLKKTNL 554 (620)
T ss_pred cchHHHHHHHHhcc
Confidence 88887777766554
No 34
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-49 Score=365.23 Aligned_cols=333 Identities=35% Similarity=0.568 Sum_probs=300.1
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEE
Q 012013 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (473)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 177 (473)
...|..++|+..+++++.+.+|..|+|+|++.+|.++++++++..+-||||||.+|++|++.++.... ..+.++++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 46799999999999999999999999999999999999999999999999999999999999987642 34789999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhh
Q 012013 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (473)
Q Consensus 178 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 257 (473)
++||++||.|..+.++.++...++++++++||....+++..+..++|||++||+++.++...-...|+.+.||||||+|+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999887665556789999999999999
Q ss_pred hhhCCCHHHHHHHHhhhhcC------CCCcc------------------------ccccceeeEEecCchhhHHHHHHHH
Q 012013 258 MLDMGFEPQIKKILSQVIIG------SPDLK------------------------ANHAIRQHVDIVSESQKYNKLVKLL 307 (473)
Q Consensus 258 l~~~~~~~~~~~i~~~~~~~------~~~~~------------------------~~~~i~~~~~~~~~~~k~~~l~~~l 307 (473)
++.+||.+++.+++..+.-. +++++ .++.+...+..+...+|...|+.++
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il 255 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSIL 255 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHH
Confidence 99999999999999873222 11111 1122333344566778899999999
Q ss_pred HhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEE
Q 012013 308 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 387 (473)
Q Consensus 308 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~ 387 (473)
.....+.+++|||.|+.+++.+...|+..|+.+..++|.+++..|..-+.+|..++..+||.|+++++|+|||-.+.|||
T Consensus 256 ~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin 335 (529)
T KOG0337|consen 256 GGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN 335 (529)
T ss_pred hccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc
Confidence 98888789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHH
Q 012013 388 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 434 (473)
Q Consensus 388 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 434 (473)
||.|.+...|+||+||+.|+|+.|.+|.++.+++..++-+|..++..
T Consensus 336 yd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 336 YDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred ccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 99999999999999999999999999999999998888887777655
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.1e-46 Score=396.77 Aligned_cols=316 Identities=22% Similarity=0.344 Sum_probs=240.5
Q ss_pred Cccc--CCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEE
Q 012013 100 SFRD--VGFPDYVMQEIS-KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (473)
Q Consensus 100 ~f~~--~~l~~~~~~~l~-~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 176 (473)
.|.. ++....+...+. .+||..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. ...+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 3554 344455555555 478999999999999999999999999999999999999999854 45699
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhh------cCCcEEEeChHHHHH--HHHccC---cccc
Q 012013 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ------KGVEIVIATPGRLID--MLESHN---TNLR 245 (473)
Q Consensus 177 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~------~~~~Iiv~Tp~~l~~--~l~~~~---~~l~ 245 (473)
||+|+++|+.++...+... ++.+..+.++.....+...+. ..++|+|+||++|.. .+.... ....
T Consensus 505 VISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 9999999998665555543 578888888877655544332 357999999999862 222111 1124
Q ss_pred ceeEEeecchhhhhhCC--CHHHHHHHHh--hh------hcCCCCccc--cccc-------------------eeeEEec
Q 012013 246 RVTYLVLDEADRMLDMG--FEPQIKKILS--QV------IIGSPDLKA--NHAI-------------------RQHVDIV 294 (473)
Q Consensus 246 ~~~~vVvDEah~l~~~~--~~~~~~~i~~--~~------~~~~~~~~~--~~~i-------------------~~~~~~~ 294 (473)
.+.+|||||||++++|| |++.++.+.. .. ..-+++... ...+ ...+.++
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv 660 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVV 660 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEe
Confidence 58899999999999998 8887776421 10 000000000 0000 0011122
Q ss_pred Cchh-hHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 012013 295 SESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 373 (473)
Q Consensus 295 ~~~~-k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~ 373 (473)
.... ....+.+++.....+.+.||||.+++.|+.++..|...++.+..+||+|++.+|..++++|..|+++|||||+++
T Consensus 661 ~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAF 740 (1195)
T PLN03137 661 PKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAF 740 (1195)
T ss_pred ccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechh
Confidence 2222 234555566544445679999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHH
Q 012013 374 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 430 (473)
Q Consensus 374 ~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 430 (473)
++|||+|+|++||||++|.|++.|+||+|||||.|.++.|++||...|....+.++.
T Consensus 741 GMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 741 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred hcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999877766655553
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-46 Score=382.82 Aligned_cols=298 Identities=25% Similarity=0.398 Sum_probs=233.7
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
..||..|+|+|.++|+.+++++++++++|||+|||++|++|++.. ...+|||+|+++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999999999998753 456999999999999999988765
Q ss_pred ccCCCceEEEEEcCccCccchH---Hh-hcCCcEEEeChHHHHHH---HHccCccccceeEEeecchhhhhhCC--CHHH
Q 012013 196 GASSKIKSTCIYGGVPKGPQVR---DL-QKGVEIVIATPGRLIDM---LESHNTNLRRVTYLVLDEADRMLDMG--FEPQ 266 (473)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~---l~~~~~~l~~~~~vVvDEah~l~~~~--~~~~ 266 (473)
+ +.+..+.++........ .+ ...++|+++||+++... +.... ...++++|||||||++++|+ |++.
T Consensus 75 g----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~-~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 75 G----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLE-ERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred C----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHH-hcCCcCEEEEeCCcccCccccccHHH
Confidence 3 66666666654432221 22 23579999999997532 22111 35789999999999999987 6777
Q ss_pred HHHHHhh--------hhcCCCCccc-----------------------cccceeeEEecCc-hhhHHHHHHHHHhHhCCC
Q 012013 267 IKKILSQ--------VIIGSPDLKA-----------------------NHAIRQHVDIVSE-SQKYNKLVKLLEDIMDGS 314 (473)
Q Consensus 267 ~~~i~~~--------~~~~~~~~~~-----------------------~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~ 314 (473)
+..+... +..-+++... ..++. +.+... ......+.+++.....+.
T Consensus 150 ~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~--~~v~~~~~~~~~~l~~~l~~~~~~~ 227 (470)
T TIGR00614 150 YKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLY--YEVRRKTPKILEDLLRFIRKEFKGK 227 (470)
T ss_pred HHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcE--EEEEeCCccHHHHHHHHHHHhcCCC
Confidence 6655221 0011111100 00111 111111 134556666666545566
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCH
Q 012013 315 RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSL 394 (473)
Q Consensus 315 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~ 394 (473)
++||||+++++++.++..|...++.+..+|++|++.+|..+++.|++|+++|||||+++++|||+|++++||++++|.|+
T Consensus 228 ~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~ 307 (470)
T TIGR00614 228 SGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSM 307 (470)
T ss_pred ceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCH
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHH
Q 012013 395 EDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 431 (473)
Q Consensus 395 ~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 431 (473)
+.|+||+||+||.|.+|.|++|+++.|...++.++..
T Consensus 308 ~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 308 ESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred HHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 9999999999999999999999999888776666543
No 37
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-47 Score=352.33 Aligned_cols=339 Identities=35% Similarity=0.576 Sum_probs=295.8
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEE
Q 012013 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (473)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 177 (473)
+.+|++++|++.+++.+...||.+|+.+|+.||..+..|.|+++.+++|+|||.+|.+++++.+... .+...+|+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-----~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-----VKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc-----hHHHHHHH
Confidence 4589999999999999999999999999999999999999999999999999999999999987432 23567999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHh-hcCCcEEEeChHHHHHHHHccCccccceeEEeecchh
Q 012013 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (473)
Q Consensus 178 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 256 (473)
++||++||.|+.+....++...+.++..+.||.....+...+ ...++|+|+||+++.+++.........+.++|+||+|
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 999999999999999999999999999888988876454444 4468999999999999999887777889999999999
Q ss_pred hhhhCCCHHHHHHHHhhhhcC------CCCc------------------------cccccceeeEEecCchhhHHHHHHH
Q 012013 257 RMLDMGFEPQIKKILSQVIIG------SPDL------------------------KANHAIRQHVDIVSESQKYNKLVKL 306 (473)
Q Consensus 257 ~l~~~~~~~~~~~i~~~~~~~------~~~~------------------------~~~~~i~~~~~~~~~~~k~~~l~~~ 306 (473)
.|+..+|.+++..|+..+... +++. ...+.++|.+..+....|+..|.++
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl 259 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDL 259 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHH
Confidence 999999999999998862111 1110 1123456666666667788889888
Q ss_pred HHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEE
Q 012013 307 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 386 (473)
Q Consensus 307 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi 386 (473)
... -...+|||++++.++.+...|...++.+..+|++|.+.+|..++..|++|..+|||+|+.+++|+|+..+..||
T Consensus 260 ~~~---~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvi 336 (397)
T KOG0327|consen 260 YRR---VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVV 336 (397)
T ss_pred HHh---hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceee
Confidence 883 34689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCCHHHH
Q 012013 387 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELA 444 (473)
Q Consensus 387 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 444 (473)
+|+.|.+.++|+||+||+||.|.+|.++.+++..+.+.++++.++..-.-.+.|....
T Consensus 337 nydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~ 394 (397)
T KOG0327|consen 337 NYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFA 394 (397)
T ss_pred eeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchh
Confidence 9999999999999999999999999999999999999999888776655555555443
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=8.5e-45 Score=379.41 Aligned_cols=307 Identities=21% Similarity=0.365 Sum_probs=234.8
Q ss_pred CHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 107 PDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 107 ~~~~~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
++...+.|++ .||..|+|+|.++++.++.++++++++|||+|||++|++|++.. ...+|||+|+++|+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~ 78 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLM 78 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHH
Confidence 3344445543 69999999999999999999999999999999999999999854 34689999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCccCccchHH---h-hcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhC
Q 012013 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261 (473)
Q Consensus 186 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~ 261 (473)
.|+.+.+..++ +.+.++.++......... + ....+++++||++|............++++|||||||++.++
T Consensus 79 ~dqv~~l~~~g----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 79 KDQVDQLLANG----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHHcC----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccc
Confidence 99999888753 566666665544332221 2 234789999999987321111223457899999999999998
Q ss_pred C--CHHHHHHHHhh--------hhcCCCCcccc--cc------ce-------------eeEEecCchhhHHHHHHHHHhH
Q 012013 262 G--FEPQIKKILSQ--------VIIGSPDLKAN--HA------IR-------------QHVDIVSESQKYNKLVKLLEDI 310 (473)
Q Consensus 262 ~--~~~~~~~i~~~--------~~~~~~~~~~~--~~------i~-------------~~~~~~~~~~k~~~l~~~l~~~ 310 (473)
+ |++.++.+... +..-+++.... .. +. ..+.+.....+...+..++..
T Consensus 155 G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~- 233 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQE- 233 (607)
T ss_pred cCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccchHHHHHHHHHh-
Confidence 6 77766555221 01111111100 00 00 011122223344555555544
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCC
Q 012013 311 MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 390 (473)
Q Consensus 311 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~ 390 (473)
..+.++||||+++++|+.++..|...++.+..+|++|++.+|..+++.|+.|+.+|||||+++++|||+|+|++||+||+
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~ 313 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI 313 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHH
Q 012013 391 PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 429 (473)
Q Consensus 391 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 429 (473)
|.|.+.|+||+|||||.|.+|.|++|+++.|...++.++
T Consensus 314 P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 314 PRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999998876655544
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.3e-44 Score=385.33 Aligned_cols=309 Identities=22% Similarity=0.336 Sum_probs=244.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEE
Q 012013 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (473)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 178 (473)
.|++++||+.+.+.+.+.|+.+|+|+|.++++. ++++++++++||||||||++|.+|++..+.. +.++||+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 578899999999999999999999999999998 7789999999999999999999999988853 5689999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh
Q 012013 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (473)
Q Consensus 179 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l 258 (473)
+|+++||.|+.+.++++.. .++++..++|+...... ....++|+|+||+++..++.+....+.++++||+||+|.+
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999998753 47888888887654332 2245799999999998888876666789999999999999
Q ss_pred hhCCCHHHHHHHHhhh---------hcCCCCccccc------------------cceeeEEe------------cCchhh
Q 012013 259 LDMGFEPQIKKILSQV---------IIGSPDLKANH------------------AIRQHVDI------------VSESQK 299 (473)
Q Consensus 259 ~~~~~~~~~~~i~~~~---------~~~~~~~~~~~------------------~i~~~~~~------------~~~~~k 299 (473)
.+.++.+.++.++..+ ..-++++.... .+...+.. .....+
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~ 229 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK 229 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccc
Confidence 9988888877765542 11122211100 00110100 000111
Q ss_pred HHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhC------------------------------------CCCeEEe
Q 012013 300 YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD------------------------------------GWPALSI 343 (473)
Q Consensus 300 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------------------------~~~~~~i 343 (473)
...+..++..+..++++||||++++.|+.++..|... ...+.++
T Consensus 230 ~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~h 309 (737)
T PRK02362 230 DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFH 309 (737)
T ss_pred hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEee
Confidence 1222222233345679999999999999998887532 1357899
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEE----cC-----CCCCHHHHHHhhccccCCCCC--cE
Q 012013 344 HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD-----FPGSLEDYVHRIGRTGRAGAK--GT 412 (473)
Q Consensus 344 hg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~----~~-----~p~s~~~~~Qr~GR~gR~g~~--g~ 412 (473)
|++|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|.||+|||||.|.+ |.
T Consensus 310 Hagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~ 389 (737)
T PRK02362 310 HAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGE 389 (737)
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999996 66 578899999999999999876 88
Q ss_pred EEEEeccc
Q 012013 413 AYTFFTAA 420 (473)
Q Consensus 413 ~~~~~~~~ 420 (473)
++++....
T Consensus 390 ~ii~~~~~ 397 (737)
T PRK02362 390 AVLLAKSY 397 (737)
T ss_pred EEEEecCc
Confidence 88888654
No 40
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4e-45 Score=355.26 Aligned_cols=325 Identities=30% Similarity=0.471 Sum_probs=278.3
Q ss_pred cCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCC
Q 012013 91 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 170 (473)
Q Consensus 91 ~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 170 (473)
++-.+.....|+++.|...++..|...+|..|+++|..|||+++.+-|+|++|..|+|||++|.+.++..+... .
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-----~ 91 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-----S 91 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----c
Confidence 34456667789999999999999999999999999999999999999999999999999999988888776543 2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhcc-CCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeE
Q 012013 171 DGPIVLVLAPTRELAVQIQQESTKFGA-SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 249 (473)
Q Consensus 171 ~~~~vlil~Pt~~La~q~~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~ 249 (473)
..+..+||+|||++|.|+.+.+.+++. ..+.++.++.||+........+.. ++|+|+||+++..+++.+.++.+.+.+
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrl 170 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRL 170 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeE
Confidence 367899999999999999999999876 367899999999988776666544 689999999999999999999999999
Q ss_pred Eeecchhhhhh-CCCHHHHHHHHhhh------h-----------------cCCC-------CccccccceeeEEecCch-
Q 012013 250 LVLDEADRMLD-MGFEPQIKKILSQV------I-----------------IGSP-------DLKANHAIRQHVDIVSES- 297 (473)
Q Consensus 250 vVvDEah~l~~-~~~~~~~~~i~~~~------~-----------------~~~~-------~~~~~~~i~~~~~~~~~~- 297 (473)
+|+||||.|++ ..|..++..|+..+ . +..+ .....-.++|++..+...
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~n 250 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPN 250 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCc
Confidence 99999999998 67999998887751 0 1111 111223456666554332
Q ss_pred -------hhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 012013 298 -------QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 370 (473)
Q Consensus 298 -------~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT 370 (473)
.|++.|-.++..+ +-...||||+....|+-++..|...|+.|.+|.|.|++.+|..+++.++.=.++|||+|
T Consensus 251 nsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsT 329 (980)
T KOG4284|consen 251 NSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVST 329 (980)
T ss_pred chHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEec
Confidence 3555565655554 33478999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 371 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 371 ~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
|..+||||-+++++|||.|.|-+.++|.||||||||.|..|.+++|+.....
T Consensus 330 DLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 330 DLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred chhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999999999987655
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.4e-44 Score=375.14 Aligned_cols=297 Identities=24% Similarity=0.375 Sum_probs=235.9
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 117 ~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
+||.+++|+|.++|+.++.++|+++++|||+|||++|++|++.. ...+|||+|+++|+.|+.+.++.+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAA- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHc-
Confidence 79999999999999999999999999999999999999998743 345899999999999999988875
Q ss_pred cCCCceEEEEEcCccCccchHH----hhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCC--CHHHHHHH
Q 012013 197 ASSKIKSTCIYGGVPKGPQVRD----LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKI 270 (473)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~----~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~--~~~~~~~i 270 (473)
++.+..+.++......... ....++|+++||++|............++++|||||||++.+++ |++.+..+
T Consensus 77 ---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 77 ---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 3667777776654433221 23467999999999864332223345679999999999999876 78777666
Q ss_pred Hhhh--------hcCCCCccc---------------------cccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeC
Q 012013 271 LSQV--------IIGSPDLKA---------------------NHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMD 321 (473)
Q Consensus 271 ~~~~--------~~~~~~~~~---------------------~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~ 321 (473)
.... ..-+++... .......+.+.....+...+.+++.... +.++||||+
T Consensus 154 ~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~-~~~~IIf~~ 232 (591)
T TIGR01389 154 GSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNKQKFLLDYLKKHR-GQSGIIYAS 232 (591)
T ss_pred HHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCHHHHHHHHHHhcC-CCCEEEEEC
Confidence 4321 000000000 0000111222234456677777776643 568999999
Q ss_pred ChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhh
Q 012013 322 TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRI 401 (473)
Q Consensus 322 ~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~ 401 (473)
+++.++.+++.|...++.+..+|++|+..+|..+++.|.+|+++|||||+++++|||+|++++||++++|.|++.|+|++
T Consensus 233 sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~ 312 (591)
T TIGR01389 233 SRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEA 312 (591)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEEEeccccHHHHHHHH
Q 012013 402 GRTGRAGAKGTAYTFFTAANARFAKELI 429 (473)
Q Consensus 402 GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 429 (473)
||+||.|.++.|++++...|....+.++
T Consensus 313 GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 313 GRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred ccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 9999999999999999988766555444
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5.2e-43 Score=378.24 Aligned_cols=313 Identities=23% Similarity=0.308 Sum_probs=234.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCC-CCCCCEEEEEcCcHHH
Q 012013 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA-PGDGPIVLVLAPTREL 184 (473)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vlil~Pt~~L 184 (473)
+++.+.+.+.+ +|..|+|+|.++|+.++++++++++||||||||++|++|++..+....... ...++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666655 688999999999999999999999999999999999999999887532111 1346789999999999
Q ss_pred HHHHHHHHHH-------h----ccCC-CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCc--cccceeEE
Q 012013 185 AVQIQQESTK-------F----GASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--NLRRVTYL 250 (473)
Q Consensus 185 a~q~~~~~~~-------~----~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~--~l~~~~~v 250 (473)
+.|+++.+.. + +... ++++.+.+|+.......+.+...++|+|+||++|..++..... .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876542 2 2233 6788889998877666666677889999999999887765432 47889999
Q ss_pred eecchhhhhhCCCHHHHHHHHhhh----------hcCCCCccccc------------------cc------ee-eEEe--
Q 012013 251 VLDEADRMLDMGFEPQIKKILSQV----------IIGSPDLKANH------------------AI------RQ-HVDI-- 293 (473)
Q Consensus 251 VvDEah~l~~~~~~~~~~~i~~~~----------~~~~~~~~~~~------------------~i------~~-~~~~-- 293 (473)
||||+|.+.+..+...+...+..+ ..-++++.... .+ .. .+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~ 256 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVIS 256 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEec
Confidence 999999999876555444333221 11111111000 00 00 0000
Q ss_pred -------cCchhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHHHhC------CCCeEEecCCCCHHHHHHHHHHH
Q 012013 294 -------VSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMD------GWPALSIHGDKSQAERDWVLSEF 359 (473)
Q Consensus 294 -------~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~------~~~~~~ihg~~~~~~r~~~~~~f 359 (473)
.........+...+... ..+.++||||+|+..|+.++..|... +..+..+||++++.+|..+++.|
T Consensus 257 p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~f 336 (876)
T PRK13767 257 PVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKL 336 (876)
T ss_pred cCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHH
Confidence 01111223333444333 34568999999999999999999762 46799999999999999999999
Q ss_pred hcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCC-CCCcEEEEEecc
Q 012013 360 KAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA-GAKGTAYTFFTA 419 (473)
Q Consensus 360 ~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~-g~~g~~~~~~~~ 419 (473)
++|.++|||||+++++|||+|++++||+++.|.++.+|+||+||+||. |..+.++++...
T Consensus 337 k~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 337 KRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 999999999999999999999999999999999999999999999986 444555555543
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2e-41 Score=361.81 Aligned_cols=311 Identities=19% Similarity=0.292 Sum_probs=240.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEE
Q 012013 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (473)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 178 (473)
.|+++++++.+.+.+.+.++.+|+|+|.++++. +++++++++++|||||||++|.+|++..+... +.++|+|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 578889999999999999999999999999986 78999999999999999999999999887642 5689999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh
Q 012013 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (473)
Q Consensus 179 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l 258 (473)
+|+++|+.|+.+.+.++. ..++++..++|+...... ....++|+|+||+++..++......++++++||+||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999998875 457888888888764322 2356799999999999888776667889999999999999
Q ss_pred hhCCCHHHHHHHHhhhh------cCCCCccccc------------------cceeeE-----EecCch--hh-HHHHHHH
Q 012013 259 LDMGFEPQIKKILSQVI------IGSPDLKANH------------------AIRQHV-----DIVSES--QK-YNKLVKL 306 (473)
Q Consensus 259 ~~~~~~~~~~~i~~~~~------~~~~~~~~~~------------------~i~~~~-----~~~~~~--~k-~~~l~~~ 306 (473)
.+.++...+..++..+. .-++++.... .+...+ ...... .+ .......
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESL 230 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHH
Confidence 99888888887776521 1122211000 000000 011111 11 1112222
Q ss_pred HHh-HhCCCeEEEEeCChHHHHHHHHHHHhC---------------------------------CCCeEEecCCCCHHHH
Q 012013 307 LED-IMDGSRILIFMDTKKGCDQITRQLRMD---------------------------------GWPALSIHGDKSQAER 352 (473)
Q Consensus 307 l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~---------------------------------~~~~~~ihg~~~~~~r 352 (473)
+.+ +..++++||||++++.|+.++..|... ...+.++|++|++.+|
T Consensus 231 ~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 231 VYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 222 234668999999999998877666321 2358899999999999
Q ss_pred HHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEE-------cCCCC-CHHHHHHhhccccCCC--CCcEEEEEecccc
Q 012013 353 DWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN-------YDFPG-SLEDYVHRIGRTGRAG--AKGTAYTFFTAAN 421 (473)
Q Consensus 353 ~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~-------~~~p~-s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~ 421 (473)
..+++.|++|.++|||||+++++|||+|.+++||. ++.|. ++.+|.||+|||||.| ..|.++++....+
T Consensus 311 ~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 311 VLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999999999999999999999999999993 44433 4779999999999976 4599999987654
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-40 Score=353.92 Aligned_cols=307 Identities=20% Similarity=0.290 Sum_probs=235.4
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 012013 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (473)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 179 (473)
.|+++++++.+++.+.+.+|. |+|+|.++++.+.++++++++||||||||+++.++++..+.. +.++|+++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 577889999999999998876 999999999999999999999999999999999999887764 46799999
Q ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhh
Q 012013 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (473)
Q Consensus 180 Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~ 259 (473)
|+++||.|+++++.++. ..+.++...+|+...... ....++|+|+||+++..++.+....+.++++||+||+|.+.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 99999999999999864 456778778777654221 23467999999999988888776678899999999999999
Q ss_pred hCCCHHHHHHHHhhh---------hcCCCCccccc------------------cceeeEE-----ecC-chhhHHHHHHH
Q 012013 260 DMGFEPQIKKILSQV---------IIGSPDLKANH------------------AIRQHVD-----IVS-ESQKYNKLVKL 306 (473)
Q Consensus 260 ~~~~~~~~~~i~~~~---------~~~~~~~~~~~------------------~i~~~~~-----~~~-~~~k~~~l~~~ 306 (473)
+..+.+.++.++..+ ...++++.... .+...+. ... .......+..+
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~ 228 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNANELAQWLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSL 228 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCccCCCCCCCCeEEEEEecCeeeecccccccccHHHH
Confidence 888877777765431 11122211100 0000000 000 01111123344
Q ss_pred HHh-HhCCCeEEEEeCChHHHHHHHHHHHhC-------------------------CCCeEEecCCCCHHHHHHHHHHHh
Q 012013 307 LED-IMDGSRILIFMDTKKGCDQITRQLRMD-------------------------GWPALSIHGDKSQAERDWVLSEFK 360 (473)
Q Consensus 307 l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~-------------------------~~~~~~ihg~~~~~~r~~~~~~f~ 360 (473)
+.+ ...++++||||++++.|+.++..|... ...+..+|+++++.+|..+++.|+
T Consensus 229 i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~ 308 (674)
T PRK01172 229 IKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR 308 (674)
T ss_pred HHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH
Confidence 444 345679999999999999999888542 124778999999999999999999
Q ss_pred cCCCcEEEEecccccCCCCCCCCEEEEcCC---------CCCHHHHHHhhccccCCCC--CcEEEEEeccc
Q 012013 361 AGKSPIMTATDVAARGLDVKDVKYVINYDF---------PGSLEDYVHRIGRTGRAGA--KGTAYTFFTAA 420 (473)
Q Consensus 361 ~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~---------p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~ 420 (473)
+|.++|||||+++++|+|+|+..+|| .+. |.++.+|.||+|||||.|. .|.++++....
T Consensus 309 ~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 309 NRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred cCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999865444 432 4578999999999999985 47788776543
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.2e-40 Score=341.49 Aligned_cols=313 Identities=25% Similarity=0.330 Sum_probs=246.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
|++.+.+.+... |..|||.|.+||+.+.+|++++++||||||||+++++|++..+.........++-.+|+|+|.|+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 688899999888 9999999999999999999999999999999999999999999886422344578899999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc--CccccceeEEeecchhhhhhCCC
Q 012013 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDMGF 263 (473)
Q Consensus 186 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--~~~l~~~~~vVvDEah~l~~~~~ 263 (473)
..+...+..++...++.+.+.+|+++.....+...+.++|+|+||+.|.-++... ...|.++.+||+||+|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 9999999999999999999999999888777778889999999999998887664 23578999999999998876543
Q ss_pred HHHHHHHHhh--------------hhcCCCCc-----------------cccccceeeEEec-Cc----hhhHHHHHHHH
Q 012013 264 EPQIKKILSQ--------------VIIGSPDL-----------------KANHAIRQHVDIV-SE----SQKYNKLVKLL 307 (473)
Q Consensus 264 ~~~~~~i~~~--------------~~~~~~~~-----------------~~~~~i~~~~~~~-~~----~~k~~~l~~~l 307 (473)
..++.-.+.. .+++.++. .........+... .. ..-...+++.+
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i 246 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERI 246 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHH
Confidence 3222222111 11111100 0000011111100 01 11122233222
Q ss_pred -HhHhCCCeEEEEeCChHHHHHHHHHHHhCC-CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEE
Q 012013 308 -EDIMDGSRILIFMDTKKGCDQITRQLRMDG-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 385 (473)
Q Consensus 308 -~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~V 385 (473)
..+.....+|||+||+..++.++..|++.+ ..+..+||+++.+.|..++++|++|+.+++|||+.++-|||+-+++.|
T Consensus 247 ~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlV 326 (814)
T COG1201 247 AELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLV 326 (814)
T ss_pred HHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEE
Confidence 233334579999999999999999999876 789999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHhhccccC-CCCCcEEEEEecc
Q 012013 386 INYDFPGSLEDYVHRIGRTGR-AGAKGTAYTFFTA 419 (473)
Q Consensus 386 i~~~~p~s~~~~~Qr~GR~gR-~g~~g~~~~~~~~ 419 (473)
|++..|.++..++||+||+|+ .+...+++++...
T Consensus 327 Iq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 327 IQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred EEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999987 4455677766655
No 46
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.5e-39 Score=341.28 Aligned_cols=322 Identities=19% Similarity=0.284 Sum_probs=234.8
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 012013 109 YVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (473)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~ 182 (473)
.+.+.+...+| +||+.|+++++.++++ .+.++++|||||||++|++|++..+.. +.+++|++||+
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT~ 294 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPTE 294 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCHH
Confidence 34455566777 7999999999999875 257999999999999999999887754 67899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCccCccc---hHHhh-cCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh
Q 012013 183 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (473)
Q Consensus 183 ~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l 258 (473)
+||.|+++.++++....++++..++|+...... ...+. ..++|+|+||+.+.+ ...+.++++||+||+|++
T Consensus 295 ~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhc
Confidence 999999999999988888999999998875442 23333 357999999987653 345678999999999986
Q ss_pred hhCCCHHHHHHHHh-----hhhcCCCCccc----------------------cccceeeEEecCchhhHHHHHHHHHh-H
Q 012013 259 LDMGFEPQIKKILS-----QVIIGSPDLKA----------------------NHAIRQHVDIVSESQKYNKLVKLLED-I 310 (473)
Q Consensus 259 ~~~~~~~~~~~i~~-----~~~~~~~~~~~----------------------~~~i~~~~~~~~~~~k~~~l~~~l~~-~ 310 (473)
.... +..+..... .+...+++... ...+.. .......+ ..+.+.+.+ .
T Consensus 370 g~~q-r~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~--~~~~~~~~-~~~~~~i~~~l 445 (630)
T TIGR00643 370 GVEQ-RKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITT--VLIKHDEK-DIVYEFIEEEI 445 (630)
T ss_pred cHHH-HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEE--EEeCcchH-HHHHHHHHHHH
Confidence 4321 222222211 11122222100 000111 11222222 444444444 3
Q ss_pred hCCCeEEEEeCCh--------HHHHHHHHHHHh--CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC
Q 012013 311 MDGSRILIFMDTK--------KGCDQITRQLRM--DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 380 (473)
Q Consensus 311 ~~~~~~lVf~~~~--------~~~~~l~~~L~~--~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~ 380 (473)
..+.+++|||+.. ..++.+++.|.. .++.+..+||+|++.+|..++++|++|+.+|||||+++++|||+|
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP 525 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVP 525 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccC
Confidence 4567899999876 456677777765 367899999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCC-CHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHhcc
Q 012013 381 DVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGR 448 (473)
Q Consensus 381 ~v~~Vi~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 448 (473)
++++||+++.|. +.++|.||+||+||.|..|.|++++.........+.++++.+...-+.-.-.+|..
T Consensus 526 ~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~ 594 (630)
T TIGR00643 526 NATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLEL 594 (630)
T ss_pred CCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhc
Confidence 999999999986 68899999999999999999999994333334444556676655444333344443
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.5e-39 Score=343.54 Aligned_cols=313 Identities=20% Similarity=0.285 Sum_probs=230.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 012013 108 DYVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (473)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 181 (473)
..+.+.+...--++||++|.++++.+.++ .+.+++||||||||++|++|++..+.. +.+++|++||
T Consensus 248 ~~~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------g~q~lilaPT 319 (681)
T PRK10917 248 GELLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------GYQAALMAPT 319 (681)
T ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecc
Confidence 34445444333347999999999999876 378999999999999999999887754 7789999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCccCccc---hHHhhc-CCcEEEeChHHHHHHHHccCccccceeEEeecchhh
Q 012013 182 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (473)
Q Consensus 182 ~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 257 (473)
++||.|+++.++++....++++..++|+...... ...+.. .++|+|+||+.+.+ ...+.++++||+||+|+
T Consensus 320 ~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 320 EILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhh
Confidence 9999999999999998888999999999874332 333444 48999999987643 33477899999999998
Q ss_pred hhhCCCHHHHHHHH--hhhhcCCCCcc---------------------c-cccceeeEEecCchhhHHHHHHHHH-hHhC
Q 012013 258 MLDMGFEPQIKKIL--SQVIIGSPDLK---------------------A-NHAIRQHVDIVSESQKYNKLVKLLE-DIMD 312 (473)
Q Consensus 258 l~~~~~~~~~~~i~--~~~~~~~~~~~---------------------~-~~~i~~~~~~~~~~~k~~~l~~~l~-~~~~ 312 (473)
+... .+..+.... ..+...+++.. . ...+... ... ..+...+.+.+. ....
T Consensus 395 fg~~-qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~--~~~-~~~~~~~~~~i~~~~~~ 470 (681)
T PRK10917 395 FGVE-QRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTV--VIP-DSRRDEVYERIREEIAK 470 (681)
T ss_pred hhHH-HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEE--EeC-cccHHHHHHHHHHHHHc
Confidence 6432 122222211 01111122110 0 0011111 111 223334444443 3345
Q ss_pred CCeEEEEeCChH--------HHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 012013 313 GSRILIFMDTKK--------GCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 382 (473)
Q Consensus 313 ~~~~lVf~~~~~--------~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v 382 (473)
+.+++|||+.++ .+..+++.|.+. ++++..+||+|++.+|..++++|++|+.+|||||+++++|||+|++
T Consensus 471 g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v 550 (681)
T PRK10917 471 GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNA 550 (681)
T ss_pred CCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCC
Confidence 669999999643 456677777654 4789999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCC-CHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCC
Q 012013 383 KYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 437 (473)
Q Consensus 383 ~~Vi~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 437 (473)
++||+++.|. ..+++.||+||+||.|..|.|++++.........+-++++.+...
T Consensus 551 ~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~d 606 (681)
T PRK10917 551 TVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETND 606 (681)
T ss_pred cEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcc
Confidence 9999999986 578899999999999999999999964433345555666766543
No 48
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.1e-39 Score=339.35 Aligned_cols=284 Identities=20% Similarity=0.261 Sum_probs=214.8
Q ss_pred CCCCCCCHHHHHHHHHHhcCC-cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCC-EEEEEcCcHHHHHHHHHHHHH
Q 012013 117 AGFFEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP-IVLVLAPTRELAVQIQQESTK 194 (473)
Q Consensus 117 ~~~~~~~~~Q~~~i~~i~~~~-~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~-~vlil~Pt~~La~q~~~~~~~ 194 (473)
.||. |+|||.++++.++.|+ ++++.+|||||||.+|.++++..... ...+ ++++++|||+||.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~------~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIG------AKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccccc------ccccceEEEeCchHHHHHHHHHHHHH
Confidence 5776 9999999999999998 57778999999999765555432111 1234 455577999999999999999
Q ss_pred hccCC-----------------------CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCc---------
Q 012013 195 FGASS-----------------------KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--------- 242 (473)
Q Consensus 195 ~~~~~-----------------------~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~--------- 242 (473)
+++.+ .+++.+++||.+...++..+..+++|||+|+ +++.+...
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 87644 4889999999999999999999999999995 55544433
Q ss_pred -------cccceeEEeecchhhhhhCCCHHHHHHHHhhh-----------hcCCCCcccc----------c---------
Q 012013 243 -------NLRRVTYLVLDEADRMLDMGFEPQIKKILSQV-----------IIGSPDLKAN----------H--------- 285 (473)
Q Consensus 243 -------~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~-----------~~~~~~~~~~----------~--------- 285 (473)
.+.++++||||||| ++++|...+..|+... .+.+++.... .
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 26789999999999 7899999999998842 2223332210 0
Q ss_pred -----cceeeEEecCchhhHHHHHHHHHhH--hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHH-----
Q 012013 286 -----AIRQHVDIVSESQKYNKLVKLLEDI--MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERD----- 353 (473)
Q Consensus 286 -----~i~~~~~~~~~~~k~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~----- 353 (473)
.+.+ +.......|...+...+... ...+++||||+|++.|+.+++.|++.++ ..+||+|++.+|.
T Consensus 239 ~l~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~ 315 (844)
T TIGR02621 239 RLAAKKIVK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKK 315 (844)
T ss_pred cccccceEE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHH
Confidence 0111 11222333443433333222 2346899999999999999999998876 8999999999999
Q ss_pred HHHHHHhc----CC-------CcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCc-EEEEEecc
Q 012013 354 WVLSEFKA----GK-------SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG-TAYTFFTA 419 (473)
Q Consensus 354 ~~~~~f~~----g~-------~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g-~~~~~~~~ 419 (473)
.++++|++ +. ..|||||+++++||||+. ++||++..| .+.|+||+||+||.|+.+ ..+.+++.
T Consensus 316 ~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 316 EIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 78999987 44 679999999999999986 889988777 799999999999999864 33555533
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.9e-39 Score=345.62 Aligned_cols=312 Identities=21% Similarity=0.227 Sum_probs=231.4
Q ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcC------CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEE
Q 012013 106 FPDYVMQEISK-AGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (473)
Q Consensus 106 l~~~~~~~l~~-~~~~~~~~~Q~~~i~~i~~~------~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 178 (473)
.+..+.+.+.. .+| +|||.|.+||+.++++ ++.+++||||+|||.+|+++++..+.. +++++|+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvL 506 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVL 506 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEE
Confidence 44556666655 566 6999999999999875 689999999999999999999887764 6789999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccc---hHHhhc-CCcEEEeChHHHHHHHHccCccccceeEEeecc
Q 012013 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (473)
Q Consensus 179 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDE 254 (473)
+||++||.|+++.++++....++++..++++....++ ...+.. .++|+|+||.. +. ....++++++|||||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~-~~v~f~~L~llVIDE 581 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQ-KDVKFKDLGLLIIDE 581 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hh-CCCCcccCCEEEeec
Confidence 9999999999999999887788888888877654333 223333 58999999843 22 345678999999999
Q ss_pred hhhhhhCCCHHHHHHHHhh--hhcCCCCccc----------------------cccceeeEEecCchhhHHHHHHHHHhH
Q 012013 255 ADRMLDMGFEPQIKKILSQ--VIIGSPDLKA----------------------NHAIRQHVDIVSESQKYNKLVKLLEDI 310 (473)
Q Consensus 255 ah~l~~~~~~~~~~~i~~~--~~~~~~~~~~----------------------~~~i~~~~~~~~~~~k~~~l~~~l~~~ 310 (473)
+|++.. .....++.+... +...+++... ...+...+.. .........++.++
T Consensus 582 ahrfgv-~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~---~~~~~i~~~i~~el 657 (926)
T TIGR00580 582 EQRFGV-KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVME---YDPELVREAIRREL 657 (926)
T ss_pred ccccch-hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEe---cCHHHHHHHHHHHH
Confidence 998632 122222222111 1111222100 0011111111 11111122334455
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEc
Q 012013 311 MDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 388 (473)
Q Consensus 311 ~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~ 388 (473)
..+++++|||++++.++.+++.|++. ++++..+||.|++.+|..++++|++|+.+|||||+++++|||+|++++||++
T Consensus 658 ~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~ 737 (926)
T TIGR00580 658 LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIE 737 (926)
T ss_pred HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEe
Confidence 56779999999999999999999874 7889999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CHHHHHHhhccccCCCCCcEEEEEecccc--HHHHHHHHHHHHHh
Q 012013 389 DFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAAN--ARFAKELITILEEA 435 (473)
Q Consensus 389 ~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~ 435 (473)
+.|. +..+|.||+||+||.|+.|.|++++...+ .....+-++.+++.
T Consensus 738 ~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 738 RADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred cCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 9865 67899999999999999999999987653 13344444445444
No 50
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-39 Score=309.87 Aligned_cols=292 Identities=26% Similarity=0.340 Sum_probs=227.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 012013 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 198 (473)
..+++.||......++.+ +++++.|||.|||+++++.+...+...+ + ++|+++||+.|+.|..+.|.++..-
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~------~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG------G-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC------C-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 357899999988887775 9999999999999998888887777642 4 8999999999999999999998766
Q ss_pred CCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhh-CC---------------
Q 012013 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MG--------------- 262 (473)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~-~~--------------- 262 (473)
..-.++.++|..........+. ...|+|+||+.+.+.+..+..++.++.+|||||||+..- ..
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 6667788888877655544444 459999999999999999999999999999999996210 00
Q ss_pred -----------CHHHHHHHHhh----------------------------------------------------------
Q 012013 263 -----------FEPQIKKILSQ---------------------------------------------------------- 273 (473)
Q Consensus 263 -----------~~~~~~~i~~~---------------------------------------------------------- 273 (473)
-...+..++..
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 01111111111
Q ss_pred hhcCCCCcc--------------------------------------------------------------------c--
Q 012013 274 VIIGSPDLK--------------------------------------------------------------------A-- 283 (473)
Q Consensus 274 ~~~~~~~~~--------------------------------------------------------------------~-- 283 (473)
+...+.... .
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 000000000 0
Q ss_pred ---c-------ccceeeEEecCchhhHHHHHHHHHhHhC---CCeEEEEeCChHHHHHHHHHHHhCCCCeE--Ee-----
Q 012013 284 ---N-------HAIRQHVDIVSESQKYNKLVKLLEDIMD---GSRILIFMDTKKGCDQITRQLRMDGWPAL--SI----- 343 (473)
Q Consensus 284 ---~-------~~i~~~~~~~~~~~k~~~l~~~l~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~--~i----- 343 (473)
. ..+.......-.+.|+..+.+++++... +.++|||++.++.++.+..+|.+.+..+. ++
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 0 0000001111235677788888877653 45999999999999999999999887774 33
Q ss_pred --cCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccc
Q 012013 344 --HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 420 (473)
Q Consensus 344 --hg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 420 (473)
..+|+|.++.++++.|++|+++|||||+++++|+|||+++.||+|++..|+..++||.||+||. +.|.++++++.+
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 2479999999999999999999999999999999999999999999999999999999999999 899999999988
No 51
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.3e-40 Score=326.73 Aligned_cols=301 Identities=25% Similarity=0.411 Sum_probs=233.1
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
-+||..++|-|.++|..+++++++++..|||.||++||.+|++.. ...+|||+|..+|...+.+.++..
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHHHHHHc
Confidence 368999999999999999999999999999999999999999765 225899999999999888888886
Q ss_pred ccCCCceEEEEEcCccCccchH---Hhh-cCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCC--CHHHHHH
Q 012013 196 GASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKK 269 (473)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~--~~~~~~~ 269 (473)
+ +.+.++.+..+..+... .+. ...++++.+|++|..-.......-..+.++||||||++.+|| |+|..+.
T Consensus 81 G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 81 G----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred C----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHH
Confidence 5 66777766655443322 222 247999999999874222111223468899999999999997 9999888
Q ss_pred HHhhhh------cCCCCcccc----ccceee-------------------EEecCchhhHHHHHHHHHh--HhCCCeEEE
Q 012013 270 ILSQVI------IGSPDLKAN----HAIRQH-------------------VDIVSESQKYNKLVKLLED--IMDGSRILI 318 (473)
Q Consensus 270 i~~~~~------~~~~~~~~~----~~i~~~-------------------~~~~~~~~k~~~l~~~l~~--~~~~~~~lV 318 (473)
+..... +-..+.++. .+|.+. +.+.....-...+. ++.+ ....+..||
T Consensus 157 lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~-fi~~~~~~~~~~GII 235 (590)
T COG0514 157 LGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLA-FLATVLPQLSKSGII 235 (590)
T ss_pred HHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHH-HHHhhccccCCCeEE
Confidence 855411 100010111 111000 00111001112222 3332 233457899
Q ss_pred EeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHH
Q 012013 319 FMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 398 (473)
Q Consensus 319 f~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~ 398 (473)
||.|++.++.++++|...|+.+..+|++|+..+|+.+.++|..++.+|+|||.++++|||-|++++|||||+|.|++.|.
T Consensus 236 Yc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYy 315 (590)
T COG0514 236 YCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYY 315 (590)
T ss_pred EEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCCcEEEEEeccccHHHHHHHHHHH
Q 012013 399 HRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 432 (473)
Q Consensus 399 Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 432 (473)
|-+|||||.|.+..|++||.+.|....+.+++.-
T Consensus 316 QE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 316 QETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred HHHhhccCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 9999999999999999999999987766666553
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.8e-38 Score=343.92 Aligned_cols=323 Identities=18% Similarity=0.187 Sum_probs=232.0
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 012013 110 VMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (473)
Q Consensus 110 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~ 183 (473)
..+......| +||+.|.++|+.++.+ +|++++++||+|||.+|+.+++..+.. +++++||+||++
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--------g~qvlvLvPT~e 660 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--------HKQVAVLVPTTL 660 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--------CCeEEEEeCcHH
Confidence 3444556676 7999999999999986 799999999999999988887766543 788999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhh----cCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhh
Q 012013 184 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (473)
Q Consensus 184 La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~ 259 (473)
||.|+++.+.++....++++.+++++.+...+...+. ..++|+|+||+.+ . ....+.++++|||||+|++.
T Consensus 661 LA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEahrfG 735 (1147)
T PRK10689 661 LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEEHRFG 735 (1147)
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEechhhcc
Confidence 9999999999876667788888888776655544332 3589999999643 2 23457789999999999973
Q ss_pred hCCCHHHHHHHHhh--hhcCCCCccc----------------------cccceeeEEecCchhhHHHHHHHHHhHhCCCe
Q 012013 260 DMGFEPQIKKILSQ--VIIGSPDLKA----------------------NHAIRQHVDIVSESQKYNKLVKLLEDIMDGSR 315 (473)
Q Consensus 260 ~~~~~~~~~~i~~~--~~~~~~~~~~----------------------~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 315 (473)
.. +...++.+... +...+++... ...+...+.. .........++.++..+++
T Consensus 736 ~~-~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~---~~~~~~k~~il~el~r~gq 811 (1147)
T PRK10689 736 VR-HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE---YDSLVVREAILREILRGGQ 811 (1147)
T ss_pred hh-HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEe---cCcHHHHHHHHHHHhcCCe
Confidence 21 12222222111 1111222100 0011111111 1111222344555556779
Q ss_pred EEEEeCChHHHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCC-C
Q 012013 316 ILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP-G 392 (473)
Q Consensus 316 ~lVf~~~~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p-~ 392 (473)
++|||++++.++.+++.|.+. +..+.++||+|++.+|..++.+|++|+.+|||||+++++|||+|++++||..+.. .
T Consensus 812 v~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~f 891 (1147)
T PRK10689 812 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 (1147)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCC
Confidence 999999999999999999876 7889999999999999999999999999999999999999999999999955443 3
Q ss_pred CHHHHHHhhccccCCCCCcEEEEEecccc--HHHHHHHHHHHHHhCC---CCCHHHHHhccCC
Q 012013 393 SLEDYVHRIGRTGRAGAKGTAYTFFTAAN--ARFAKELITILEEAGQ---KVSPELAAMGRGA 450 (473)
Q Consensus 393 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~~~---~~~~~l~~~~~~~ 450 (473)
+..+|+||+||+||.|+.|.|++++.... ...+.+-++.+++... -..-.+.+|.-.+
T Consensus 892 glaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg 954 (1147)
T PRK10689 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 (1147)
T ss_pred CHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcC
Confidence 56789999999999999999998875532 2333444444444433 3333445554433
No 53
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-39 Score=281.78 Aligned_cols=304 Identities=30% Similarity=0.515 Sum_probs=247.6
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEE
Q 012013 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (473)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 177 (473)
.+-|.++-|.+++++++..+||.+|..+|.++||...-|.|++++|..|.|||.+|.+..++.+.-- .....+|+
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlv 115 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLV 115 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEE
Confidence 4557888899999999999999999999999999999999999999999999999999988886432 12456999
Q ss_pred EcCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchh
Q 012013 178 LAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (473)
Q Consensus 178 l~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 256 (473)
+|.||+||.|+.++..+|.+.. ..++.+++||.........+..-++|+|+||++++.+..+...+++++.++|+||||
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcd 195 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECD 195 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHH
Confidence 9999999999999988887653 578999999999988888888888999999999999999999999999999999999
Q ss_pred hhhhC-CCHHHHHHHHhh-------------------------------hhcCCCCccccccceeeEEecCchhhHHHHH
Q 012013 257 RMLDM-GFEPQIKKILSQ-------------------------------VIIGSPDLKANHAIRQHVDIVSESQKYNKLV 304 (473)
Q Consensus 257 ~l~~~-~~~~~~~~i~~~-------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 304 (473)
.|++. ..+..+..|+.. +.++...-...+.+.|++....+.+|...+.
T Consensus 196 kmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~ 275 (387)
T KOG0329|consen 196 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLN 275 (387)
T ss_pred HHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhh
Confidence 88753 355666666543 1111111122234455555566677777777
Q ss_pred HHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCE
Q 012013 305 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 384 (473)
Q Consensus 305 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~ 384 (473)
++|..+. -..++||+.+... |. | +.+ +|||+++++|+||..++.
T Consensus 276 dLLd~Le-FNQVvIFvKsv~R-------l~------------------------f---~kr-~vat~lfgrgmdiervNi 319 (387)
T KOG0329|consen 276 DLLDVLE-FNQVVIFVKSVQR-------LS------------------------F---QKR-LVATDLFGRGMDIERVNI 319 (387)
T ss_pred hhhhhhh-hcceeEeeehhhh-------hh------------------------h---hhh-hHHhhhhccccCccccee
Confidence 7776643 3579999988665 10 2 123 899999999999999999
Q ss_pred EEEcCCCCCHHHHHHhhccccCCCCCcEEEEEecc-ccHHHHHHHHHHHHHhCCCCCHH
Q 012013 385 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA-ANARFAKELITILEEAGQKVSPE 442 (473)
Q Consensus 385 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~ 442 (473)
|+|||+|.+.++|.||++||||.|..|.++.|+.. +++..+..+.+..+-.-.++|++
T Consensus 320 ~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 320 VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 99999999999999999999999999999999876 46677777777776666677766
No 54
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.1e-37 Score=313.70 Aligned_cols=289 Identities=22% Similarity=0.276 Sum_probs=222.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 199 (473)
..|+|+|..+++.+++|+ |+.+.||+|||++|.+|++..... ++.++||+||++||.|.++++.++...+
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 479999999999999999 899999999999999999988664 6789999999999999999999999999
Q ss_pred CceEEEEEcCccCccchHHhhcCCcEEEeChHHH-HHHHHccC-------------------------ccccceeEEeec
Q 012013 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN-------------------------TNLRRVTYLVLD 253 (473)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~-------------------------~~l~~~~~vVvD 253 (473)
++++.+++|+... +.+....+++|+|+|...| .++|..+- ...+.+.+.|||
T Consensus 172 Glsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 9999999999753 4555567899999999777 33433221 123568899999
Q ss_pred chhhhh-hC-----------------CCHHHHHHHHhh------------------------------------------
Q 012013 254 EADRML-DM-----------------GFEPQIKKILSQ------------------------------------------ 273 (473)
Q Consensus 254 Eah~l~-~~-----------------~~~~~~~~i~~~------------------------------------------ 273 (473)
|+|.++ |. .+...+..+...
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence 999643 00 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 012013 274 -------------------------------------------------------------------------------- 273 (473)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (473)
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence
Q ss_pred ------------------------hhcCCCCccccccceeeEEecCchhhHHHHHHHHHhHh-CCCeEEEEeCChHHHHH
Q 012013 274 ------------------------VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQ 328 (473)
Q Consensus 274 ------------------------~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~ 328 (473)
+.+.... +......+.+..++...|...|.+.+.... .+.++||||+|++.++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k-p~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~ 488 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNR-PSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASER 488 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCC-CccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 0000000 001112223344566778899998887754 35689999999999999
Q ss_pred HHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC---CCC-----EEEEcCCCCCHHHHHHh
Q 012013 329 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK---DVK-----YVINYDFPGSLEDYVHR 400 (473)
Q Consensus 329 l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~---~v~-----~Vi~~~~p~s~~~~~Qr 400 (473)
++..|.+.++++..+||++++ |+..+..|..+...|+|||++++||+||+ +|. +||+++.|.|...|.||
T Consensus 489 L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr 566 (656)
T PRK12898 489 LSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQL 566 (656)
T ss_pred HHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHh
Confidence 999999999999999998654 44455556656667999999999999999 666 99999999999999999
Q ss_pred hccccCCCCCcEEEEEeccccHH
Q 012013 401 IGRTGRAGAKGTAYTFFTAANAR 423 (473)
Q Consensus 401 ~GR~gR~g~~g~~~~~~~~~~~~ 423 (473)
+||+||.|.+|.+++|++..|.-
T Consensus 567 ~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 567 AGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred cccccCCCCCeEEEEEechhHHH
Confidence 99999999999999999987653
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.5e-37 Score=340.90 Aligned_cols=273 Identities=24% Similarity=0.314 Sum_probs=200.7
Q ss_pred EEccCCCChhHHhHHHHHHHHhcCCCC-----CCCCCCEEEEEcCcHHHHHHHHHHHHHh-----------c-cCCCceE
Q 012013 141 GIAETGSGKTLAYLLPAIVHVNAQPFL-----APGDGPIVLVLAPTRELAVQIQQESTKF-----------G-ASSKIKS 203 (473)
Q Consensus 141 ~~a~TGsGKT~~~~l~~l~~~~~~~~~-----~~~~~~~vlil~Pt~~La~q~~~~~~~~-----------~-~~~~~~~ 203 (473)
++||||||||++|++|++..+...+.. ....+.++|||+|+++|+.|+.+.++.. + ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 1234689999999999999999988641 1 2346888
Q ss_pred EEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc-CccccceeEEeecchhhhhhCCCHHH----HHHHHhh-----
Q 012013 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEADRMLDMGFEPQ----IKKILSQ----- 273 (473)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~vVvDEah~l~~~~~~~~----~~~i~~~----- 273 (473)
...+|+.+..++.+.+.+.++|+|+||++|..++.+. ...++++++|||||+|.+.+..+..+ +..+...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999887776677778999999999999887653 34689999999999999987643333 3333221
Q ss_pred -hhcCCCCccc-----------------------cccceeeEEecCchhh--------------------HHH-HHHHHH
Q 012013 274 -VIIGSPDLKA-----------------------NHAIRQHVDIVSESQK--------------------YNK-LVKLLE 308 (473)
Q Consensus 274 -~~~~~~~~~~-----------------------~~~i~~~~~~~~~~~k--------------------~~~-l~~~l~ 308 (473)
++.-++++.. ...+. .+....+..+ ... ...++.
T Consensus 161 QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~ 239 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILD 239 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHHHH
Confidence 0000111100 00011 0111111000 011 123444
Q ss_pred hHhCCCeEEEEeCChHHHHHHHHHHHhCC---------------------------------CCeEEecCCCCHHHHHHH
Q 012013 309 DIMDGSRILIFMDTKKGCDQITRQLRMDG---------------------------------WPALSIHGDKSQAERDWV 355 (473)
Q Consensus 309 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---------------------------------~~~~~ihg~~~~~~r~~~ 355 (473)
.+..+.++||||||+..|+.++..|++.. +.+..|||++++++|..+
T Consensus 240 ~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~I 319 (1490)
T PRK09751 240 EVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAIT 319 (1490)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHH
Confidence 45556789999999999999999986531 125689999999999999
Q ss_pred HHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCC-CCCcEEE
Q 012013 356 LSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA-GAKGTAY 414 (473)
Q Consensus 356 ~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~-g~~g~~~ 414 (473)
++.|++|++++||||+++++||||+++++||+++.|.++.+|+||+||+||. +..+.++
T Consensus 320 E~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 320 EQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 9999999999999999999999999999999999999999999999999996 2234444
No 56
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.2e-37 Score=319.42 Aligned_cols=291 Identities=21% Similarity=0.284 Sum_probs=226.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 012013 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (473)
Q Consensus 118 ~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~ 197 (473)
|. .|+++|..+++.+.+|+ |+.+.||+|||++|++|++...+. ++.|+|++||++||.|.++++..+..
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 44 79999999999888776 999999999999999999877765 77899999999999999999999999
Q ss_pred CCCceEEEEEcCccCccchHHhhcCCcEEEeChHHH-HHHHHccC------ccccceeEEeecchhhhhh-CC-------
Q 012013 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLRRVTYLVLDEADRMLD-MG------- 262 (473)
Q Consensus 198 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~~~~~vVvDEah~l~~-~~------- 262 (473)
.+++.+.++.|+.+...+.+. ...++|+|+||++| .++|.... ..++.+.++||||||.|+= ..
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 999999999999874333333 35689999999998 45554321 3467899999999997541 00
Q ss_pred --------CHHHHHHHHh--------------------------------------------------h-----------
Q 012013 263 --------FEPQIKKILS--------------------------------------------------Q----------- 273 (473)
Q Consensus 263 --------~~~~~~~i~~--------------------------------------------------~----------- 273 (473)
+...+..+.. .
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 0000000000 0
Q ss_pred --------------------------------------hhc---------------------------------------
Q 012013 274 --------------------------------------VII--------------------------------------- 276 (473)
Q Consensus 274 --------------------------------------~~~--------------------------------------- 276 (473)
+.+
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~ 383 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEV 383 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHH
Confidence 000
Q ss_pred ------CCCCccc-cccceeeEEecCchhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCC
Q 012013 277 ------GSPDLKA-NHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 348 (473)
Q Consensus 277 ------~~~~~~~-~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~ 348 (473)
.-|+... ...-...........|...+.+.+... ..+.++||||+|++.++.++..|.+.++++..+||++.
T Consensus 384 Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 384 YNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred hCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 0000000 000011122345567888888888664 45669999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccCCCC---CCCC-----EEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccc
Q 012013 349 QAERDWVLSEFKAGKSPIMTATDVAARGLDV---KDVK-----YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 420 (473)
Q Consensus 349 ~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi---~~v~-----~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 420 (473)
+.++..+...++.| .|+|||++++||+|| |.|. +||++++|.|...|+||+||+||.|.+|.++.|++..
T Consensus 464 ~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 464 AKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred HHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 98888888777766 699999999999999 6898 9999999999999999999999999999999999986
Q ss_pred cH
Q 012013 421 NA 422 (473)
Q Consensus 421 ~~ 422 (473)
|.
T Consensus 542 D~ 543 (790)
T PRK09200 542 DD 543 (790)
T ss_pred HH
Confidence 65
No 57
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=5.4e-37 Score=314.31 Aligned_cols=281 Identities=17% Similarity=0.178 Sum_probs=206.9
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 012013 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 198 (473)
...|+++|.++++.++.+++.++++|||+|||+++... ........ ..++|||+||++|+.||.+.+.+|...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~~------~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLENY------EGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhcC------CCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 35899999999999999999999999999999875432 22222211 348999999999999999999998755
Q ss_pred CCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhh--hhc
Q 012013 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ--VII 276 (473)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~--~~~ 276 (473)
....+..+.+|.... ...+|+|+||++|.+... ..+.++++||+||||++....+...+..+... ...
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lG 254 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKSLTSIITKLDNCKFKFG 254 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchhHHHHHHhhhccceEEE
Confidence 444555666765432 346999999999876432 24678999999999999876665555444221 111
Q ss_pred CCCCccccc---------------------cce------ee---EEe----------------------cCchhhHHHHH
Q 012013 277 GSPDLKANH---------------------AIR------QH---VDI----------------------VSESQKYNKLV 304 (473)
Q Consensus 277 ~~~~~~~~~---------------------~i~------~~---~~~----------------------~~~~~k~~~l~ 304 (473)
-++++.... .+. .. +.. .....+...+.
T Consensus 255 LTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~ 334 (501)
T PHA02558 255 LTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIA 334 (501)
T ss_pred EeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHH
Confidence 111111000 000 00 000 01111222333
Q ss_pred HHHHhHh-CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-cccccCCCCCCC
Q 012013 305 KLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVKDV 382 (473)
Q Consensus 305 ~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT-~~~~~Gidi~~v 382 (473)
+++.... .+.++||||.++++++.+++.|.+.+.++..+||+++..+|..+++.|+++...||||| +++++|+|+|++
T Consensus 335 ~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~l 414 (501)
T PHA02558 335 NLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNL 414 (501)
T ss_pred HHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccc
Confidence 3333332 34689999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CEEEEcCCCCCHHHHHHhhccccCCCCCcE-EEEE
Q 012013 383 KYVINYDFPGSLEDYVHRIGRTGRAGAKGT-AYTF 416 (473)
Q Consensus 383 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~-~~~~ 416 (473)
++||+++++.|...|+||+||++|.+..+. |+++
T Consensus 415 d~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 415 HHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred cEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 999999999999999999999999876543 4443
No 58
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.7e-36 Score=312.63 Aligned_cols=292 Identities=18% Similarity=0.220 Sum_probs=219.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 200 (473)
.++|+|.|++..+..++..++.++||+|||++|++|++..++. ++.++||+|+++||.|+.+++..+...++
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 4577777777766666668999999999999999998777664 55699999999999999999999998999
Q ss_pred ceEEEEEcCccC---ccchHHhhcCCcEEEeChHHH-HHHHHc------cCccccceeEEeecchhhhhhCC--------
Q 012013 201 IKSTCIYGGVPK---GPQVRDLQKGVEIVIATPGRL-IDMLES------HNTNLRRVTYLVLDEADRMLDMG-------- 262 (473)
Q Consensus 201 ~~~~~~~gg~~~---~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~------~~~~l~~~~~vVvDEah~l~~~~-------- 262 (473)
+.+.+++++... ..+.+....+++|+|+||++| .++|.. ....++.+.++|+||||.|+-..
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 999888776322 222333345799999999999 455532 22346789999999999874211
Q ss_pred --------CHHHHHHHHhh-------------------------------------------------------------
Q 012013 263 --------FEPQIKKILSQ------------------------------------------------------------- 273 (473)
Q Consensus 263 --------~~~~~~~i~~~------------------------------------------------------------- 273 (473)
+...+..+...
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 00000000000
Q ss_pred --------------------------------------hhcC--------------------------CC----------
Q 012013 274 --------------------------------------VIIG--------------------------SP---------- 279 (473)
Q Consensus 274 --------------------------------------~~~~--------------------------~~---------- 279 (473)
+.+. ++
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 0000 00
Q ss_pred ------Ccccccc----ceeeEEecCchhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCC
Q 012013 280 ------DLKANHA----IRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 348 (473)
Q Consensus 280 ------~~~~~~~----i~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~ 348 (473)
..+.+.. -...........|...+.+.+.+. ..+.++||||++++.++.++..|.+.++++..+|+++.
T Consensus 380 Y~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~ 459 (762)
T TIGR03714 380 YSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNA 459 (762)
T ss_pred hCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCCh
Confidence 0000000 011122345567888888877664 45669999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccCCCCC---------CCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEecc
Q 012013 349 QAERDWVLSEFKAGKSPIMTATDVAARGLDVK---------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA 419 (473)
Q Consensus 349 ~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~---------~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 419 (473)
+.++..+...++.| .|+|||++++||+||+ ++.+|+++++|....+ +||+||+||.|.+|.++.|++.
T Consensus 460 ~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~ 536 (762)
T TIGR03714 460 AKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSL 536 (762)
T ss_pred HHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEcc
Confidence 99988887777776 6999999999999999 8999999999988766 9999999999999999999998
Q ss_pred ccHH
Q 012013 420 ANAR 423 (473)
Q Consensus 420 ~~~~ 423 (473)
.|.-
T Consensus 537 eD~l 540 (762)
T TIGR03714 537 EDDL 540 (762)
T ss_pred chhh
Confidence 7653
No 59
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1e-36 Score=339.89 Aligned_cols=302 Identities=20% Similarity=0.284 Sum_probs=228.7
Q ss_pred HHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHH
Q 012013 109 YVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 187 (473)
Q Consensus 109 ~~~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q 187 (473)
.+.+.+++ .|| +|+++|+++++.++++++++++||||+|||++++++++..... ++++|||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~--------g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALK--------GKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhc--------CCeEEEEECHHHHHHH
Confidence 44556665 788 7999999999999999999999999999999666655544322 6789999999999999
Q ss_pred HHHHHHHhccCC--CceEEEEEcCccCccchH---Hhhc-CCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhh-
Q 012013 188 IQQESTKFGASS--KIKSTCIYGGVPKGPQVR---DLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD- 260 (473)
Q Consensus 188 ~~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~---~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~- 260 (473)
+.+.++.++... ++.+..++|+.+...+.. .+.. .++|+|+||++|.+.+.... ..++++|||||||+|++
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~--~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK--HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh--hCCCCEEEEECceecccc
Confidence 999999987664 456677888877655432 3334 48999999999988765421 26799999999999986
Q ss_pred ----------CCCHHHHHH----HHh----------------------h-------hhcCCCCccc--------------
Q 012013 261 ----------MGFEPQIKK----ILS----------------------Q-------VIIGSPDLKA-------------- 283 (473)
Q Consensus 261 ----------~~~~~~~~~----i~~----------------------~-------~~~~~~~~~~-------------- 283 (473)
++|.+++.. ++. . +.+.+++...
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f 295 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGF 295 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEE
Confidence 589888864 321 0 1122333221
Q ss_pred --------cccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHH---HHHHHHHHHhCCCCeEEecCCCCHHHH
Q 012013 284 --------NHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKG---CDQITRQLRMDGWPALSIHGDKSQAER 352 (473)
Q Consensus 284 --------~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~---~~~l~~~L~~~~~~~~~ihg~~~~~~r 352 (473)
..++.+.+.......+ ..+.+++... +..+||||++++. |+.+++.|...|+++..+|++ |
T Consensus 296 ~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R 367 (1638)
T PRK14701 296 EVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----N 367 (1638)
T ss_pred EecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----H
Confidence 1123333333333333 5677777664 3579999999875 589999999999999999995 8
Q ss_pred HHHHHHHhcCCCcEEEEe----cccccCCCCCC-CCEEEEcCCCC---CHHHHHHhh-------------ccccCCCCCc
Q 012013 353 DWVLSEFKAGKSPIMTAT----DVAARGLDVKD-VKYVINYDFPG---SLEDYVHRI-------------GRTGRAGAKG 411 (473)
Q Consensus 353 ~~~~~~f~~g~~~iLvaT----~~~~~Gidi~~-v~~Vi~~~~p~---s~~~~~Qr~-------------GR~gR~g~~g 411 (473)
...+++|++|+++||||| ++++||||+|+ |++|||||.|. +++.|.|.. ||++|.|.+.
T Consensus 368 ~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~ 447 (1638)
T PRK14701 368 KKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPI 447 (1638)
T ss_pred HHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcc
Confidence 889999999999999999 58999999999 99999999999 877666655 9999999988
Q ss_pred EEEEEeccccHHHHHHHH
Q 012013 412 TAYTFFTAANARFAKELI 429 (473)
Q Consensus 412 ~~~~~~~~~~~~~~~~l~ 429 (473)
.+++.+...+...++.++
T Consensus 448 ~~~~~~~~~~~~~~~~~l 465 (1638)
T PRK14701 448 EGVLDVFPEDVEFLRSIL 465 (1638)
T ss_pred hhHHHhHHHHHHHHHHHh
Confidence 887555554444444433
No 60
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=5.8e-36 Score=327.53 Aligned_cols=277 Identities=22% Similarity=0.310 Sum_probs=212.2
Q ss_pred HHHHHHC-CCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHH
Q 012013 111 MQEISKA-GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (473)
Q Consensus 111 ~~~l~~~-~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~ 189 (473)
.+.+.+. |+ +|+++|.++++.++++++++++||||+|||+ |.++++..+.. .++++|||+||++||.|+.
T Consensus 70 ~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~ 140 (1176)
T PRK09401 70 EKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVV 140 (1176)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHH
Confidence 3344443 55 8999999999999999999999999999996 45555544432 2688999999999999999
Q ss_pred HHHHHhccCCCceEEEEEcCccC-----ccchHHhh-cCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhh---
Q 012013 190 QESTKFGASSKIKSTCIYGGVPK-----GPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD--- 260 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~gg~~~-----~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~--- 260 (473)
+.+++++...++.+..++++... ..+...+. ..++|+|+||++|.+++. .....++++|||||||+|++
T Consensus 141 ~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 141 EKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred HHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhccc
Confidence 99999998888888777776542 12223333 358999999999999876 34456799999999999986
Q ss_pred --------CCCH-HHHHHHHhh------------------------------hhcCCCCcccc-----------------
Q 012013 261 --------MGFE-PQIKKILSQ------------------------------VIIGSPDLKAN----------------- 284 (473)
Q Consensus 261 --------~~~~-~~~~~i~~~------------------------------~~~~~~~~~~~----------------- 284 (473)
+||. +++..++.. +.+.+++....
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~ 298 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGS 298 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecC
Confidence 6784 455544422 22233332211
Q ss_pred -----ccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHH---HHHHHHHHHhCCCCeEEecCCCCHHHHHHHH
Q 012013 285 -----HAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKG---CDQITRQLRMDGWPALSIHGDKSQAERDWVL 356 (473)
Q Consensus 285 -----~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~---~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~ 356 (473)
.++.+.+..+. .+...+.+++.... ..+||||+++.. ++.+++.|+..|+++..+||++ ...+
T Consensus 299 ~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l 369 (1176)
T PRK09401 299 PVFYLRNIVDSYIVDE--DSVEKLVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKF 369 (1176)
T ss_pred cccccCCceEEEEEcc--cHHHHHHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHH
Confidence 11222222222 56677777776543 479999999777 9999999999999999999999 2245
Q ss_pred HHHhcCCCcEEEE----ecccccCCCCCC-CCEEEEcCCCC------CHHHHHHhhccccCC
Q 012013 357 SEFKAGKSPIMTA----TDVAARGLDVKD-VKYVINYDFPG------SLEDYVHRIGRTGRA 407 (473)
Q Consensus 357 ~~f~~g~~~iLva----T~~~~~Gidi~~-v~~Vi~~~~p~------s~~~~~Qr~GR~gR~ 407 (473)
++|++|+++|||| |++++||||+|+ +++||||+.|. ..+.|.||+||+...
T Consensus 370 ~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 370 EKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred HHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 9999999999999 699999999999 89999999998 668899999999743
No 61
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5.3e-36 Score=310.39 Aligned_cols=283 Identities=18% Similarity=0.234 Sum_probs=201.3
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCChhHH---------hHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 012013 124 PIQAQGWPMALKGRDLIGIAETGSGKTLA---------YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (473)
Q Consensus 124 ~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~---------~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 194 (473)
.+|.++++.+++++++|++|+||||||.+ |++|.+..+.... .....+.++|++||++||.|+.+.+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 36999999999999999999999999986 3333444332110 122356899999999999999999877
Q ss_pred hccC---CCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHH
Q 012013 195 FGAS---SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271 (473)
Q Consensus 195 ~~~~---~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~ 271 (473)
.... .+..+.+.+|+... .+........+|+|+|++. ....+.++++|||||||++..++ +.+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--hHHHHHH
Confidence 5432 35667888998763 2222223367999999652 11247889999999999987665 2222222
Q ss_pred h-------hhhcCCCCcccc---------------------ccceeeEEecC----------chhhHHHHHHHHHhHh--
Q 012013 272 S-------QVIIGSPDLKAN---------------------HAIRQHVDIVS----------ESQKYNKLVKLLEDIM-- 311 (473)
Q Consensus 272 ~-------~~~~~~~~~~~~---------------------~~i~~~~~~~~----------~~~k~~~l~~~l~~~~-- 311 (473)
. ++.+.++++... ..+.+.+.... ...+ ..+...+....
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k-~~~l~~L~~~~~~ 393 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEK-KNIVTALKKYTPP 393 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHH-HHHHHHHHHhhcc
Confidence 1 233344443210 11122111110 1112 22334443322
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHHH-hcCCCcEEEEecccccCCCCCCCCEEEEc
Q 012013 312 DGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEF-KAGKSPIMTATDVAARGLDVKDVKYVINY 388 (473)
Q Consensus 312 ~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~f-~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~ 388 (473)
.++.+||||+++.+++.+++.|++. ++.+..+||++++. ++++++| ++|+.+|||||+++++|||||+|++||++
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEEC
Confidence 2458999999999999999999876 68999999999975 4666777 78999999999999999999999999999
Q ss_pred C---CCC---------CHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 389 D---FPG---------SLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 389 ~---~p~---------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
+ .|. |.++|+||+|||||. ++|.|+.|+++.+.
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 8 554 888999999999999 89999999998764
No 62
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.4e-35 Score=303.87 Aligned_cols=291 Identities=22% Similarity=0.275 Sum_probs=224.7
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 199 (473)
..|+++|..+...+.+|+ |+.++||+|||++|.+|++...+. +..|+|++||++||.|.++++..+...+
T Consensus 55 ~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 368888888888777665 899999999999999999755554 4569999999999999999999999999
Q ss_pred CceEEEEEcCccCccchHHhhcCCcEEEeChHHH-HHHHHcc------CccccceeEEeecchhhhhhCCCH--------
Q 012013 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRMLDMGFE-------- 264 (473)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~vVvDEah~l~~~~~~-------- 264 (473)
++++.+++++.+..... ....++|+|+||++| .+++..+ ...++.+.++|+||+|+|+-...+
T Consensus 125 GLsv~~i~g~~~~~~r~--~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 125 GLSVGLILSGMSPEERR--EAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred CCeEEEEeCCCCHHHHH--HhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 99999999988754332 233589999999999 8887765 245688999999999986521000
Q ss_pred ------------H----------------------------HHHHHHh------------------h-------------
Q 012013 265 ------------P----------------------------QIKKILS------------------Q------------- 273 (473)
Q Consensus 265 ------------~----------------------------~~~~i~~------------------~------------- 273 (473)
+ .++.++. .
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 0 0000000 0
Q ss_pred ------------------------------------hhcCC--------------------------C------------
Q 012013 274 ------------------------------------VIIGS--------------------------P------------ 279 (473)
Q Consensus 274 ------------------------------------~~~~~--------------------------~------------ 279 (473)
+.+.. .
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 362 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN 362 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC
Confidence 00000 0
Q ss_pred ----Ccccccc----ceeeEEecCchhhHHHHHHHHHh-HhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHH
Q 012013 280 ----DLKANHA----IRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQA 350 (473)
Q Consensus 280 ----~~~~~~~----i~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~ 350 (473)
..+.+.. -...........|+..+.+.+.+ +..+.++||||++++.++.++..|.+.++++..+|+. +.
T Consensus 363 l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~ 440 (745)
T TIGR00963 363 LEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NH 440 (745)
T ss_pred CCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hH
Confidence 0000000 00111123345677777765544 4456699999999999999999999999999999998 88
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccCCCCCC-------CCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHH
Q 012013 351 ERDWVLSEFKAGKSPIMTATDVAARGLDVKD-------VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 423 (473)
Q Consensus 351 ~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~-------v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 423 (473)
+|+..+..|..+...|+|||++++||+||+. ..+||+++.|.|...|.|++||+||.|.+|.+..|++..|.-
T Consensus 441 ~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 441 EREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred HHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHH
Confidence 9999999999999999999999999999998 559999999999999999999999999999999999988653
Q ss_pred H
Q 012013 424 F 424 (473)
Q Consensus 424 ~ 424 (473)
+
T Consensus 521 ~ 521 (745)
T TIGR00963 521 M 521 (745)
T ss_pred H
Confidence 3
No 63
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=8.2e-36 Score=316.05 Aligned_cols=280 Identities=20% Similarity=0.284 Sum_probs=208.0
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hccCCCceE
Q 012013 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKS 203 (473)
Q Consensus 125 ~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~-~~~~~~~~~ 203 (473)
+-.+.+..+.+++++|++|+||||||++|.++++..... +++++|++|||++|.|+++.+.+ ++...+..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~--------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI--------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc--------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 344666777788999999999999999999998877521 46899999999999999999864 444445555
Q ss_pred EEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchh-hhhhCCCHHH-HHHHHh------hhh
Q 012013 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILS------QVI 275 (473)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah-~l~~~~~~~~-~~~i~~------~~~ 275 (473)
.....+.. ......+|+|+|+++|.+++..+ ..++++++|||||+| ++++..+.-. ++.+.. ++.
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 44443322 12345789999999999998874 468999999999999 5776554322 222222 122
Q ss_pred cCCCCcccc------------------ccceeeEEecCchhhH-----HHHHHHHHhHhCCCeEEEEeCChHHHHHHHHH
Q 012013 276 IGSPDLKAN------------------HAIRQHVDIVSESQKY-----NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQ 332 (473)
Q Consensus 276 ~~~~~~~~~------------------~~i~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~ 332 (473)
+.++++... ..+...+.......+. ..+..++.. ..+.+||||+++.+++.+++.
T Consensus 151 lmSATl~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~eI~~l~~~ 228 (819)
T TIGR01970 151 AMSATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQAEIRRVQEQ 228 (819)
T ss_pred EEeCCCCHHHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHH
Confidence 233322210 0122222222222222 122223322 246899999999999999999
Q ss_pred HHh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCC-----------------
Q 012013 333 LRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG----------------- 392 (473)
Q Consensus 333 L~~---~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~----------------- 392 (473)
|++ .++.+..+||++++.+|..+++.|++|..+|||||+++++|||||+|++||+++.+.
T Consensus 229 L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 308 (819)
T TIGR01970 229 LAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVR 308 (819)
T ss_pred HHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEE
Confidence 987 478899999999999999999999999999999999999999999999999999874
Q ss_pred -CHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 393 -SLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 393 -s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
|.++|.||+|||||. .+|.||.++++.+.
T Consensus 309 iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 309 ISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred ECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 345699999999999 89999999998654
No 64
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=4.3e-36 Score=289.48 Aligned_cols=314 Identities=20% Similarity=0.308 Sum_probs=248.8
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEE
Q 012013 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (473)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 177 (473)
...+++.+|+.+...|+..|+.++.|+|.-++.+ ++.|.|.+++.+|+||||++..++-+..++.. +.+.|+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-------g~Kmlf 266 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-------GKKMLF 266 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-------CCeEEE
Confidence 4567889999999999999999999999999987 77999999999999999999999888888763 788999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccch----HHhhcCCcEEEeChHHHHHHHHccCccccceeEEeec
Q 012013 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV----RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (473)
Q Consensus 178 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~----~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvD 253 (473)
++|..+||+|.++.|++-...+++.+..-.|-.-..... .....++||||+|++-+-.++... ..+.++..||+|
T Consensus 267 LvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVID 345 (830)
T COG1202 267 LVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVID 345 (830)
T ss_pred EehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEee
Confidence 999999999999999986678888887766654332221 122346899999999976666665 568999999999
Q ss_pred chhhhhhCCCHHHHHHHHhh--------------hhcCCCCcc-------------ccccceeeEEecC-chhhHHHHHH
Q 012013 254 EADRMLDMGFEPQIKKILSQ--------------VIIGSPDLK-------------ANHAIRQHVDIVS-ESQKYNKLVK 305 (473)
Q Consensus 254 Eah~l~~~~~~~~~~~i~~~--------------~~~~~~~~~-------------~~~~i~~~~~~~~-~~~k~~~l~~ 305 (473)
|+|.+-+....+.+.-++.. .+++++.-. ....+..++..+. +.+|.+.+..
T Consensus 346 EiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~ 425 (830)
T COG1202 346 EIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERHLVFARNESEKWDIIAR 425 (830)
T ss_pred eeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCeeEeecCCCCChhHeeeeecCchHHHHHHHH
Confidence 99999875544444444332 122222100 0112333334444 6788888888
Q ss_pred HHHhHhC-------CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCC
Q 012013 306 LLEDIMD-------GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 378 (473)
Q Consensus 306 ~l~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gid 378 (473)
+.+.... .+.+|||+++++.|..+++.|...|+++..+|++++..+|..+...|.++++.++|+|.+++.|+|
T Consensus 426 L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVD 505 (830)
T COG1202 426 LVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVD 505 (830)
T ss_pred HHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCC
Confidence 7765432 238999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEE----EcCCCCCHHHHHHhhccccCCCCC--cEEEEEeccc
Q 012013 379 VKDVKYVI----NYDFPGSLEDYVHRIGRTGRAGAK--GTAYTFFTAA 420 (473)
Q Consensus 379 i~~v~~Vi----~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 420 (473)
+|.-.+|+ .-.-+-|+.+|.||.|||||.+-. |++|+++.+.
T Consensus 506 FPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 506 FPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred CchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99644333 112345899999999999998764 8999888765
No 65
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=5.8e-36 Score=279.50 Aligned_cols=290 Identities=29% Similarity=0.476 Sum_probs=217.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhc---cCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCcccccee
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFG---ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVT 248 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~---~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 248 (473)
.|.++|+-|+++||+|.++.+++|. ....++...+.||.-.+.|...+..+.+|+|+||++|.+++......+..+.
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 5789999999999999999777664 4445677788899999999999999999999999999999999999999999
Q ss_pred EEeecchhhhhhCCCHHHHHHHHhhhhcC------------CCCc-------------------------cccccceeeE
Q 012013 249 YLVLDEADRMLDMGFEPQIKKILSQVIIG------------SPDL-------------------------KANHAIRQHV 291 (473)
Q Consensus 249 ~vVvDEah~l~~~~~~~~~~~i~~~~~~~------------~~~~-------------------------~~~~~i~~~~ 291 (473)
++|+||++.++..++.+.+..+..++.-. +.++ ...+.+.+.+
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 99999999999988888777776551100 0000 0000111111
Q ss_pred Eec------------------C------------chhhHHHHHHHHHh--------HhCCCeEEEEeCChHHHHHHHHHH
Q 012013 292 DIV------------------S------------ESQKYNKLVKLLED--------IMDGSRILIFMDTKKGCDQITRQL 333 (473)
Q Consensus 292 ~~~------------------~------------~~~k~~~l~~~l~~--------~~~~~~~lVf~~~~~~~~~l~~~L 333 (473)
..+ . +.+.......+++. ...-.+.||||.|+..|+.|.+++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHH
Confidence 100 0 01111222222221 112348999999999999999999
Q ss_pred HhC---CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCC
Q 012013 334 RMD---GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK 410 (473)
Q Consensus 334 ~~~---~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 410 (473)
.+. .+.++++||+..+.+|.+.++.|+....++||||+++++|+||..+-++||..+|.+...|+|||||+||+-+-
T Consensus 526 ~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraerm 605 (725)
T KOG0349|consen 526 NQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERM 605 (725)
T ss_pred HHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhc
Confidence 876 36799999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cEEEEEeccc--------------------------------cHHHHHHHHHHHHHhCCCCCHHHHHhccCCCCCCCCCC
Q 012013 411 GTAYTFFTAA--------------------------------NARFAKELITILEEAGQKVSPELAAMGRGAPPSSGHGG 458 (473)
Q Consensus 411 g~~~~~~~~~--------------------------------~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 458 (473)
|.++.++... ++.++.++.+.|.-.-+.+.+.+.-......|..-.|-
T Consensus 606 glaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~~vpv~~fdgkv~ygq 685 (725)
T KOG0349|consen 606 GLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVNDFDGKVVYGQ 685 (725)
T ss_pred ceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCCCCcccccCCeEEecc
Confidence 8888776432 23556666666666666666666555556665444343
Q ss_pred CCC
Q 012013 459 FRD 461 (473)
Q Consensus 459 ~~~ 461 (473)
++-
T Consensus 686 k~~ 688 (725)
T KOG0349|consen 686 KNL 688 (725)
T ss_pred ccc
Confidence 333
No 66
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.1e-35 Score=311.46 Aligned_cols=281 Identities=18% Similarity=0.302 Sum_probs=206.1
Q ss_pred HHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hccCCCceEE
Q 012013 126 QAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKST 204 (473)
Q Consensus 126 Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~-~~~~~~~~~~ 204 (473)
-.+.+..+.++++++++|+||||||++|.++++..... ..+++|++|||++|.|+++.+.+ ++...+..+.
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--------CCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 34666777888999999999999999999888865321 34799999999999999999864 4555556666
Q ss_pred EEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhh-hhhCCCH-HHHHHHHh------hhhc
Q 012013 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFE-PQIKKILS------QVII 276 (473)
Q Consensus 205 ~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~-l~~~~~~-~~~~~i~~------~~~~ 276 (473)
..+++... ......|+|+||++|.+++..+ ..+.++++|||||+|. .++..+. ..+..+.. ++.+
T Consensus 82 y~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 82 YRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred EEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 55554432 1234589999999999998864 4689999999999996 3443321 11122221 1223
Q ss_pred CCCCcccc------------------ccceeeEEecCchhhHH-HHHHHHHhHh--CCCeEEEEeCChHHHHHHHHHHHh
Q 012013 277 GSPDLKAN------------------HAIRQHVDIVSESQKYN-KLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRM 335 (473)
Q Consensus 277 ~~~~~~~~------------------~~i~~~~~~~~~~~k~~-~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~ 335 (473)
.++++... ..+.+.+.......+.. .+...+.... ..+.+||||+++.+++.+++.|+.
T Consensus 155 mSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~ 234 (812)
T PRK11664 155 MSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLAS 234 (812)
T ss_pred EecCCCHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 33322110 01222222222233332 1222222221 246899999999999999999986
Q ss_pred ---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCC------------------CH
Q 012013 336 ---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG------------------SL 394 (473)
Q Consensus 336 ---~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~------------------s~ 394 (473)
.++.+..+||++++.+|..+++.|++|+.+|||||+++++|||||+|++||+++.+. |.
T Consensus 235 ~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSk 314 (812)
T PRK11664 235 RVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQ 314 (812)
T ss_pred hccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeech
Confidence 578899999999999999999999999999999999999999999999999987654 34
Q ss_pred HHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 395 EDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 395 ~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
++|.||+||+||. .+|.||.++++.+.
T Consensus 315 asa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 315 ASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred hhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 6899999999999 79999999998654
No 67
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.9e-35 Score=307.10 Aligned_cols=306 Identities=22% Similarity=0.306 Sum_probs=233.7
Q ss_pred cCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 012013 103 DVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (473)
Q Consensus 103 ~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 181 (473)
...+++.+.+.+...++.++.|.|+.++.... +++|+|+++|||||||+++++.++..+.+. +.++|+|||+
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPl 85 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPL 85 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeCh
Confidence 34577888888888888899999998887755 569999999999999999999999998863 5679999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhC
Q 012013 182 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261 (473)
Q Consensus 182 ~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~ 261 (473)
++||.+.++++++| ...++++...+|+...... ...+++|+|+||+++-..+.+....+..+++||+||+|.+.+.
T Consensus 86 kALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 86 KALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred HHHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc
Confidence 99999999999954 4678999999998875432 2356899999999988888777667889999999999999887
Q ss_pred CCHHHHHHHHhhhhcC---------CCCcccc------------------------ccceeeEEecCchh-------hHH
Q 012013 262 GFEPQIKKILSQVIIG---------SPDLKAN------------------------HAIRQHVDIVSESQ-------KYN 301 (473)
Q Consensus 262 ~~~~~~~~i~~~~~~~---------~~~~~~~------------------------~~i~~~~~~~~~~~-------k~~ 301 (473)
...+.+..|+...... ++++... ....+.+....... ...
T Consensus 162 ~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 162 TRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred ccCceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHH
Confidence 6566665555441110 1111110 01111222222112 233
Q ss_pred HHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhC-------------------------------------CCCeEEec
Q 012013 302 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD-------------------------------------GWPALSIH 344 (473)
Q Consensus 302 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~ih 344 (473)
.+..++..+.+++.+||||++++.+...++.|... -..+.++|
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccc
Confidence 34445555666789999999999999988888630 02345899
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEE----EcC-----CCCCHHHHHHhhccccCCCCC--cEE
Q 012013 345 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----NYD-----FPGSLEDYVHRIGRTGRAGAK--GTA 413 (473)
Q Consensus 345 g~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi----~~~-----~p~s~~~~~Qr~GR~gR~g~~--g~~ 413 (473)
++++..+|..+.+.|+.|.++|||||++++.|+|+|.-++|| .|+ .+.++.+++||+|||||.|-+ |.+
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~ 401 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEA 401 (766)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcE
Confidence 999999999999999999999999999999999999877777 455 345689999999999999876 666
Q ss_pred EEEecc
Q 012013 414 YTFFTA 419 (473)
Q Consensus 414 ~~~~~~ 419 (473)
+++.+.
T Consensus 402 ~i~~~~ 407 (766)
T COG1204 402 IILATS 407 (766)
T ss_pred EEEecC
Confidence 666633
No 68
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.9e-34 Score=311.03 Aligned_cols=293 Identities=27% Similarity=0.362 Sum_probs=223.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 012013 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 198 (473)
..+|++||.+++..++.+ ++++++|||+|||+++++++...+.. .+.++|||+||++|+.||.+.++++...
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 357899999999988876 99999999999999998888777632 2578999999999999999999998654
Q ss_pred CCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHH-------------
Q 012013 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP------------- 265 (473)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~------------- 265 (473)
....+..++|+.... +...+...++|+|+||+.+...+......+.++++|||||||++.......
T Consensus 85 ~~~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 445677777766543 333444567999999999988887777778899999999999864321111
Q ss_pred --------------HHHHHHhhhh------------------------------------------------------cC
Q 012013 266 --------------QIKKILSQVI------------------------------------------------------IG 277 (473)
Q Consensus 266 --------------~~~~i~~~~~------------------------------------------------------~~ 277 (473)
.+..++..+. .+
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 1111111000 00
Q ss_pred CC-Ccc---cc-------ccce----------------------------------------------------------
Q 012013 278 SP-DLK---AN-------HAIR---------------------------------------------------------- 288 (473)
Q Consensus 278 ~~-~~~---~~-------~~i~---------------------------------------------------------- 288 (473)
.. ... .. ..+.
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 00 000 00 0000
Q ss_pred --------------eeEEecCchhhHHHHHHHHHhHh---CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCC-----
Q 012013 289 --------------QHVDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD----- 346 (473)
Q Consensus 289 --------------~~~~~~~~~~k~~~l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~----- 346 (473)
..........|++.|.++|++.. .+.++||||++++.|+.|++.|...++.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 00000122456677777777654 45699999999999999999999999999999886
Q ss_pred ---CCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEecccc
Q 012013 347 ---KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 421 (473)
Q Consensus 347 ---~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 421 (473)
+++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.+ +|.+++++....
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t 480 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGT 480 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCC
Confidence 89999999999999999999999999999999999999999999999999999999999985 488888887653
No 69
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=293.34 Aligned_cols=291 Identities=27% Similarity=0.360 Sum_probs=215.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 012013 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (473)
Q Consensus 118 ~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~ 197 (473)
....+++||.+.+..++ ++++|+++|||+|||+++...++.++...+ ..++|+++|++-|+.|..+.+..++.
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccC
Confidence 34579999999999999 999999999999999999999999987765 57899999999999999988888876
Q ss_pred CCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCcc-ccceeEEeecchhhhhhC-CCH-----------
Q 012013 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTN-LRRVTYLVLDEADRMLDM-GFE----------- 264 (473)
Q Consensus 198 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~-l~~~~~vVvDEah~l~~~-~~~----------- 264 (473)
. ..+....++.........+-...+|+|+||+.|.+.|.+.... |+.|.++||||||+-.-. .+.
T Consensus 132 ~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~ 209 (746)
T KOG0354|consen 132 P--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKN 209 (746)
T ss_pred c--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhh
Confidence 5 4566666664444444455566799999999999988876443 589999999999952100 000
Q ss_pred ----------------HHHHHHHhh---------------------------------------------------hh--
Q 012013 265 ----------------PQIKKILSQ---------------------------------------------------VI-- 275 (473)
Q Consensus 265 ----------------~~~~~i~~~---------------------------------------------------~~-- 275 (473)
.++...+.. +.
T Consensus 210 ~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~ 289 (746)
T KOG0354|consen 210 QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEE 289 (746)
T ss_pred ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhc
Confidence 011110000 00
Q ss_pred ----cCC-----------------CCcccc--------------------ccce--------------------------
Q 012013 276 ----IGS-----------------PDLKAN--------------------HAIR-------------------------- 288 (473)
Q Consensus 276 ----~~~-----------------~~~~~~--------------------~~i~-------------------------- 288 (473)
+.. +..... +.++
T Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e 369 (746)
T KOG0354|consen 290 GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELE 369 (746)
T ss_pred CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhc
Confidence 000 000000 0000
Q ss_pred --------------eeEE--ecCchhhHHHHHHHHHhHhC---CCeEEEEeCChHHHHHHHHHHHh---CCCCeEEec--
Q 012013 289 --------------QHVD--IVSESQKYNKLVKLLEDIMD---GSRILIFMDTKKGCDQITRQLRM---DGWPALSIH-- 344 (473)
Q Consensus 289 --------------~~~~--~~~~~~k~~~l~~~l~~~~~---~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~ih-- 344 (473)
+.+. ......|+..+.+++.+... +.++||||.++..|+.|..+|.+ .+++...+-
T Consensus 370 ~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 370 ARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQ 449 (746)
T ss_pred chhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeec
Confidence 0000 00134567777777766543 44999999999999999999973 233443333
Q ss_pred ------CCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEec
Q 012013 345 ------GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 418 (473)
Q Consensus 345 ------g~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 418 (473)
.+|++.++.++++.|++|+++|||||+++++|+||+.+++||.||...|+..++||.|| ||+ ..|.|+++++
T Consensus 450 ~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t 527 (746)
T KOG0354|consen 450 GKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTT 527 (746)
T ss_pred cccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEc
Confidence 37999999999999999999999999999999999999999999999999999999999 999 7899999998
Q ss_pred c
Q 012013 419 A 419 (473)
Q Consensus 419 ~ 419 (473)
.
T Consensus 528 ~ 528 (746)
T KOG0354|consen 528 G 528 (746)
T ss_pred c
Confidence 4
No 70
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.5e-34 Score=284.76 Aligned_cols=271 Identities=22% Similarity=0.247 Sum_probs=189.1
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCc----
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKG---- 213 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~---- 213 (473)
+++++||||||||++|++|++..+... ...+++|++|+++|+.|+.+.+..+... .+...++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 578999999999999999999876542 2568999999999999999999986422 233333332210
Q ss_pred --------cchHHh------hcCCcEEEeChHHHHHHHHccC----cccc--ceeEEeecchhhhhhCCCHHHHHHHHhh
Q 012013 214 --------PQVRDL------QKGVEIVIATPGRLIDMLESHN----TNLR--RVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (473)
Q Consensus 214 --------~~~~~~------~~~~~Iiv~Tp~~l~~~l~~~~----~~l~--~~~~vVvDEah~l~~~~~~~~~~~i~~~ 273 (473)
...... ....+|+|+||+++...+.... ..+. ..++||+||+|.+.+.++.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 000000 1235799999999988766521 1111 23789999999988754332 2222211
Q ss_pred -------hhcCCCCccc-------------------ccc----ceeeEEec--CchhhHHHHHHHHHhHhCCCeEEEEeC
Q 012013 274 -------VIIGSPDLKA-------------------NHA----IRQHVDIV--SESQKYNKLVKLLEDIMDGSRILIFMD 321 (473)
Q Consensus 274 -------~~~~~~~~~~-------------------~~~----i~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~lVf~~ 321 (473)
+.+.+++++. ... ..+.+... ....+...+.+++.....+.++||||+
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~ 230 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVN 230 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEEC
Confidence 1111211110 000 01111111 122455666667766666789999999
Q ss_pred ChHHHHHHHHHHHhCCC--CeEEecCCCCHHHHHH----HHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHH
Q 012013 322 TKKGCDQITRQLRMDGW--PALSIHGDKSQAERDW----VLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLE 395 (473)
Q Consensus 322 ~~~~~~~l~~~L~~~~~--~~~~ihg~~~~~~r~~----~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~ 395 (473)
+++.|+.+++.|++.+. .+..+||++++.+|.. +++.|++++.+|||||+++++|+||+ +++||++..| ++
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 99999999999987765 4899999999999976 48899999999999999999999995 8899998877 88
Q ss_pred HHHHhhccccCCCCC----cEEEEEecccc
Q 012013 396 DYVHRIGRTGRAGAK----GTAYTFFTAAN 421 (473)
Q Consensus 396 ~~~Qr~GR~gR~g~~----g~~~~~~~~~~ 421 (473)
+|+||+||+||.|+. |..++|....+
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999999998864 36777766443
No 71
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.5e-34 Score=295.53 Aligned_cols=295 Identities=19% Similarity=0.224 Sum_probs=205.2
Q ss_pred CCCCHHHHHHHHHHhc-C--CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 120 FEPTPIQAQGWPMALK-G--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~-~--~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
..|+|||.+++..+.. + +..++++|||+|||++.+..+ ..+ ..++|||||+.+|+.||.+++.+|.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 4789999999998874 3 478999999999999866443 332 3459999999999999999999986
Q ss_pred cCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc--------CccccceeEEeecchhhhhhCCCHHHHH
Q 012013 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--------NTNLRRVTYLVLDEADRMLDMGFEPQIK 268 (473)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--------~~~l~~~~~vVvDEah~l~~~~~~~~~~ 268 (473)
......+..++|+.... ......|+|+|++.+.....+. .+.-..+++||+||||++....|+..+.
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~il~ 397 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRVLT 397 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHHHH
Confidence 54445555555543221 1223689999998875322111 1112468899999999986544444333
Q ss_pred HHHhhhhcC-CCCccc--------------------------cccceee--------------------------EEecC
Q 012013 269 KILSQVIIG-SPDLKA--------------------------NHAIRQH--------------------------VDIVS 295 (473)
Q Consensus 269 ~i~~~~~~~-~~~~~~--------------------------~~~i~~~--------------------------~~~~~ 295 (473)
.+.....++ ++++.. ...+... .....
T Consensus 398 ~l~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~ 477 (732)
T TIGR00603 398 IVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVM 477 (732)
T ss_pred hcCcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhh
Confidence 322210000 000000 0000000 00011
Q ss_pred chhhHHHHHHHHHhHh-CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEeccc
Q 012013 296 ESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPIMTATDVA 373 (473)
Q Consensus 296 ~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g-~~~iLvaT~~~ 373 (473)
...|+..+..+++.+. .+.++||||.+...++.++..|. +..+||++++.+|..+++.|+++ .+++||+|+++
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVg 552 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVG 552 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEeccc
Confidence 2345555555665543 46699999999999999998873 45799999999999999999975 78999999999
Q ss_pred ccCCCCCCCCEEEEcCCC-CCHHHHHHhhccccCCCCCcEE-------EEEeccc--cHHHHHHHHHHHHHh
Q 012013 374 ARGLDVKDVKYVINYDFP-GSLEDYVHRIGRTGRAGAKGTA-------YTFFTAA--NARFAKELITILEEA 435 (473)
Q Consensus 374 ~~Gidi~~v~~Vi~~~~p-~s~~~~~Qr~GR~gR~g~~g~~-------~~~~~~~--~~~~~~~l~~~l~~~ 435 (473)
.+|||+|++++||+++.| .|..+|+||+||++|.+..+.+ |.|++.+ +..+...-..+|.+.
T Consensus 553 deGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~q 624 (732)
T TIGR00603 553 DTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQ 624 (732)
T ss_pred ccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHC
Confidence 999999999999999987 5999999999999999877665 7788776 344555555555543
No 72
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.1e-33 Score=310.01 Aligned_cols=266 Identities=20% Similarity=0.321 Sum_probs=201.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHH
Q 012013 108 DYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 187 (473)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q 187 (473)
..+.+.+.+....+|+++|+.+++.++.|++++++||||+|||+ |.+|++..+... ++++|||+||++||.|
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~-------g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK-------GKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc-------CCeEEEEeCHHHHHHH
Confidence 34555566555568999999999999999999999999999997 566766655432 6889999999999999
Q ss_pred HHHHHHHhccCCCceEE---EEEcCccCccch---HHhhc-CCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhh
Q 012013 188 IQQESTKFGASSKIKST---CIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (473)
Q Consensus 188 ~~~~~~~~~~~~~~~~~---~~~gg~~~~~~~---~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~ 260 (473)
+++.+.++....++.+. +++|+.+...+. ..+.. +++|+|+||++|.+.+.... . ++++|||||||+|++
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhh
Confidence 99999999877666543 456777654432 23333 58999999999998876522 1 799999999999998
Q ss_pred -----------CCCHHH-HHHHHh----------------------h--------hhcCCCCc-cc--------------
Q 012013 261 -----------MGFEPQ-IKKILS----------------------Q--------VIIGSPDL-KA-------------- 283 (473)
Q Consensus 261 -----------~~~~~~-~~~i~~----------------------~--------~~~~~~~~-~~-------------- 283 (473)
+||.++ +..++. . +.+.+++. +.
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~ 293 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFE 293 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceE
Confidence 788764 444321 0 11223331 11
Q ss_pred -------cccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCCh---HHHHHHHHHHHhCCCCeEEecCCCCHHHHH
Q 012013 284 -------NHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTK---KGCDQITRQLRMDGWPALSIHGDKSQAERD 353 (473)
Q Consensus 284 -------~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~---~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~ 353 (473)
..++.+.+... ..+...|.++++.. +..+||||+++ +.|+.++..|.+.|+++..+||++++
T Consensus 294 v~~~~~~~r~I~~~~~~~--~~~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~---- 365 (1171)
T TIGR01054 294 VGGGSDTLRNVVDVYVED--EDLKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK---- 365 (1171)
T ss_pred ecCccccccceEEEEEec--ccHHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----
Confidence 01122222211 12245667777654 35799999999 99999999999999999999999973
Q ss_pred HHHHHHhcCCCcEEEEe----cccccCCCCCC-CCEEEEcCCCC
Q 012013 354 WVLSEFKAGKSPIMTAT----DVAARGLDVKD-VKYVINYDFPG 392 (473)
Q Consensus 354 ~~~~~f~~g~~~iLvaT----~~~~~Gidi~~-v~~Vi~~~~p~ 392 (473)
.+++.|++|+++||||| ++++||||+|+ |++|||||.|.
T Consensus 366 ~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 68999999999999994 99999999999 89999999995
No 73
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=9.4e-34 Score=299.34 Aligned_cols=303 Identities=23% Similarity=0.360 Sum_probs=238.6
Q ss_pred HHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 012013 113 EISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (473)
Q Consensus 113 ~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~ 192 (473)
....+|...++|-|.++|..++.|+++++.+|||.||++||.+|++.. +...|||.|..+|++.+...+
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHhh
Confidence 344678899999999999999999999999999999999999998765 558999999999986665555
Q ss_pred HHhccCCCceEEEEEcCccCccch---HHhhc---CCcEEEeChHHHHHH--HHccCccccc---eeEEeecchhhhhhC
Q 012013 193 TKFGASSKIKSTCIYGGVPKGPQV---RDLQK---GVEIVIATPGRLIDM--LESHNTNLRR---VTYLVLDEADRMLDM 261 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~gg~~~~~~~---~~~~~---~~~Iiv~Tp~~l~~~--l~~~~~~l~~---~~~vVvDEah~l~~~ 261 (473)
. ..+|....+.++....++. +.+.. .++|++.||+++... +......+.. +.++|+||||++..|
T Consensus 325 ~----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 S----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred h----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 3 3457777787776654332 22333 478999999998642 2222223333 899999999999998
Q ss_pred C--CHHHHHHHHhh---------------------------hhcCCCCc----cccccceeeEEecCchhhHHHHHHHHH
Q 012013 262 G--FEPQIKKILSQ---------------------------VIIGSPDL----KANHAIRQHVDIVSESQKYNKLVKLLE 308 (473)
Q Consensus 262 ~--~~~~~~~i~~~---------------------------~~~~~~~~----~~~~~i~~~~~~~~~~~k~~~l~~~l~ 308 (473)
+ |++..+++... +.+..+.+ ....++...|...........+...++
T Consensus 401 gHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~ 480 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESK 480 (941)
T ss_pred cccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhh
Confidence 7 88888877543 11111110 011222223333232344455556666
Q ss_pred hHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEc
Q 012013 309 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 388 (473)
Q Consensus 309 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~ 388 (473)
........||||.++.+|+.++..|+..++.+..+|++|+..+|..+...|..++++|+|||=++++|||.|+|+.||||
T Consensus 481 ~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~ 560 (941)
T KOG0351|consen 481 LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHY 560 (941)
T ss_pred hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEEC
Confidence 66777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHH
Q 012013 389 DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 430 (473)
Q Consensus 389 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 430 (473)
.+|.|++.|.|-+|||||.|....|++|+...|...++.++.
T Consensus 561 ~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 561 SLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred CCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 999999999999999999999999999999987766555544
No 74
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=9.5e-33 Score=257.75 Aligned_cols=302 Identities=24% Similarity=0.387 Sum_probs=216.8
Q ss_pred HHHHHH-CCCCC-CCHHHHHHHHHHhcC-CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHH
Q 012013 111 MQEISK-AGFFE-PTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 187 (473)
Q Consensus 111 ~~~l~~-~~~~~-~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q 187 (473)
.++|++ +|+.+ -++.|.+|+..+..+ +|+.+++|||+||+++|.||+|.+ +...||+.|..+|...
T Consensus 8 reaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIkD 76 (641)
T KOG0352|consen 8 REALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIKD 76 (641)
T ss_pred HHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHHH
Confidence 344443 34333 388999999987765 699999999999999999999876 4589999999999988
Q ss_pred HHHHHHHhccCCCceEEEEEcCccCccc---hHHh---hcCCcEEEeChHHHHH-----HHHccCccccceeEEeecchh
Q 012013 188 IQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDL---QKGVEIVIATPGRLID-----MLESHNTNLRRVTYLVLDEAD 256 (473)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~---~~~~~Iiv~Tp~~l~~-----~l~~~~~~l~~~~~vVvDEah 256 (473)
+.+-+.++. +.+..+.+..+..+. +.++ .....|++.||+.... +|+. ..+-..+.|+|+||||
T Consensus 77 QiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~-L~~r~~L~Y~vVDEAH 151 (641)
T KOG0352|consen 77 QIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG-LANRDVLRYIVVDEAH 151 (641)
T ss_pred HHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH-HhhhceeeeEEechhh
Confidence 888887764 233333333222221 2222 2356899999987542 2221 2223358899999999
Q ss_pred hhhhCC--CHHHHHHHHhh------hhcCCCCcccccc----------ceeeEEecC-c----------------hhhHH
Q 012013 257 RMLDMG--FEPQIKKILSQ------VIIGSPDLKANHA----------IRQHVDIVS-E----------------SQKYN 301 (473)
Q Consensus 257 ~l~~~~--~~~~~~~i~~~------~~~~~~~~~~~~~----------i~~~~~~~~-~----------------~~k~~ 301 (473)
++.+|| |+|+...+-.. +..-..+..++.. +.+.+.+.. . .+-+.
T Consensus 152 CVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~ 231 (641)
T KOG0352|consen 152 CVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLT 231 (641)
T ss_pred hHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhH
Confidence 999997 77776665433 1000000011111 111111000 0 11122
Q ss_pred HHHHHHHhHh-------C-----CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 012013 302 KLVKLLEDIM-------D-----GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 369 (473)
Q Consensus 302 ~l~~~l~~~~-------~-----~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLva 369 (473)
.|.++-.... + .+.-||||.|+++|+.++-.|...|+++..+|.++...+|.++.+.|.+++++||+|
T Consensus 232 ~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~A 311 (641)
T KOG0352|consen 232 VLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAA 311 (641)
T ss_pred hHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEE
Confidence 2222222111 1 235799999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHH
Q 012013 370 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 428 (473)
Q Consensus 370 T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 428 (473)
|..+++|||-|+|++|||++.|.|+.-|.|-.|||||.|.+..|-++|..+|...+.-|
T Consensus 312 T~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 312 TVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred EeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887554433
No 75
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=6.1e-32 Score=287.70 Aligned_cols=306 Identities=24% Similarity=0.364 Sum_probs=230.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
....+..++.+.++..|+++|.+|+..+.+|+++|++.+||||||.+|++|++++++..+ ..++|+|.||++||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhH
Confidence 344557888889999999999999999999999999999999999999999999999864 34789999999999
Q ss_pred HHHHHHHHHhccCCC--ceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc----CccccceeEEeecchhhhh
Q 012013 186 VQIQQESTKFGASSK--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLDEADRML 259 (473)
Q Consensus 186 ~q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~----~~~l~~~~~vVvDEah~l~ 259 (473)
+.+.+.+.++....+ +......|..........+...++|+++||.+|..++... .+.++++++||+||+|.--
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999987776 6666666666655444666788999999999998865543 2346779999999999421
Q ss_pred hCCCHHH----HHHHHhh---------hhcCCCCcccc----------------------ccceeeEEecC---------
Q 012013 260 DMGFEPQ----IKKILSQ---------VIIGSPDLKAN----------------------HAIRQHVDIVS--------- 295 (473)
Q Consensus 260 ~~~~~~~----~~~i~~~---------~~~~~~~~~~~----------------------~~i~~~~~~~~--------- 295 (473)
-.|... ++.+... ++..++++... ......+....
T Consensus 209 -Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 209 -GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred -ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhc
Confidence 112222 2222211 11111111110 01111111111
Q ss_pred chhhHHHHHHHHHhHh-CCCeEEEEeCChHHHHHHH----HHHHhCC----CCeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 012013 296 ESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQIT----RQLRMDG----WPALSIHGDKSQAERDWVLSEFKAGKSPI 366 (473)
Q Consensus 296 ~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~----~~L~~~~----~~~~~ihg~~~~~~r~~~~~~f~~g~~~i 366 (473)
...+...+..+..... .+-++|+|+.++..++.+. ..+...+ ..+..+++++...+|..++..|+.|+..+
T Consensus 288 r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~ 367 (851)
T COG1205 288 RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367 (851)
T ss_pred ccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccE
Confidence 1133444444444433 3459999999999999987 4444444 56889999999999999999999999999
Q ss_pred EEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccccCCCCCcEEEEEec
Q 012013 367 MTATDVAARGLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFT 418 (473)
Q Consensus 367 LvaT~~~~~Gidi~~v~~Vi~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~ 418 (473)
+++|++++-|+||-+++.||....|. +..++.||.||+||.++....++...
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999999999999999999 89999999999999987776666655
No 76
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=5.5e-31 Score=280.94 Aligned_cols=136 Identities=18% Similarity=0.281 Sum_probs=118.1
Q ss_pred hHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHH-HhCCCCeEEecCCCCHHHHHHHHHHHhcC--CCcEEEEeccccc
Q 012013 299 KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL-RMDGWPALSIHGDKSQAERDWVLSEFKAG--KSPIMTATDVAAR 375 (473)
Q Consensus 299 k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L-~~~~~~~~~ihg~~~~~~r~~~~~~f~~g--~~~iLvaT~~~~~ 375 (473)
|...|.++++... ..|+||||+++..++.+++.| ...|+++..+||+|++.+|..+++.|+++ ..+|||||+++++
T Consensus 480 Ki~~L~~~L~~~~-~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgse 558 (956)
T PRK04914 480 RVEWLIDFLKSHR-SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSE 558 (956)
T ss_pred HHHHHHHHHHhcC-CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhcc
Confidence 4455666665543 569999999999999999999 56799999999999999999999999984 5999999999999
Q ss_pred CCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHh
Q 012013 376 GLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 435 (473)
Q Consensus 376 Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 435 (473)
|+|++.+++||+||+|+|+..|.||+||++|.|+++.+.+++..........+.+.+.+.
T Consensus 559 GlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~ 618 (956)
T PRK04914 559 GRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEG 618 (956)
T ss_pred CCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999888777766665666666666553
No 77
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.98 E-value=8.9e-31 Score=257.07 Aligned_cols=260 Identities=18% Similarity=0.241 Sum_probs=172.8
Q ss_pred HHHHHHHHHhcCCc--EEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC----
Q 012013 125 IQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS---- 198 (473)
Q Consensus 125 ~Q~~~i~~i~~~~~--~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~---- 198 (473)
+|.++++.+.++.+ ++++||||||||++|++|++.. ..++++++|+++|+.|+.+.+.++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999998874 7889999999999999998742 345899999999999999998887532
Q ss_pred CCceEEEEEcCccCc--cch----------------H--HhhcCCcEEEeChHHHHHHHHcc---C-----ccccceeEE
Q 012013 199 SKIKSTCIYGGVPKG--PQV----------------R--DLQKGVEIVIATPGRLIDMLESH---N-----TNLRRVTYL 250 (473)
Q Consensus 199 ~~~~~~~~~gg~~~~--~~~----------------~--~~~~~~~Iiv~Tp~~l~~~l~~~---~-----~~l~~~~~v 250 (473)
.+..+..+.|..... ... + .....+.|+++||+.|..++... . ..+.++++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 244455454432111 000 0 01235789999999987655431 1 124789999
Q ss_pred eecchhhhhhCCCH-----HHHHHHHh------hhhcCCCCccc-----------------------------------c
Q 012013 251 VLDEADRMLDMGFE-----PQIKKILS------QVIIGSPDLKA-----------------------------------N 284 (473)
Q Consensus 251 VvDEah~l~~~~~~-----~~~~~i~~------~~~~~~~~~~~-----------------------------------~ 284 (473)
||||+|.+...... -....++. .+...++++.. .
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 99999986532211 01111111 11111111000 0
Q ss_pred ---------ccceeeEEecCchhhHHHHHHHHHhH------hCCCeEEEEeCChHHHHHHHHHHHhCC--CCeEEecCCC
Q 012013 285 ---------HAIRQHVDIVSESQKYNKLVKLLEDI------MDGSRILIFMDTKKGCDQITRQLRMDG--WPALSIHGDK 347 (473)
Q Consensus 285 ---------~~i~~~~~~~~~~~k~~~l~~~l~~~------~~~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~ihg~~ 347 (473)
..+...+.. ....+...+..+++.. ..++++||||++++.++.++..|+..+ +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 012222222 2223333333322222 245689999999999999999998764 5788899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhcccc
Q 012013 348 SQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTG 405 (473)
Q Consensus 348 ~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~g 405 (473)
++.+|... ++.+|||||+++++|||++.+ +|| ++ |.+.+.|+||+||+|
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99988654 378899999999999999986 566 45 889999999999987
No 78
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.98 E-value=7.2e-31 Score=283.69 Aligned_cols=277 Identities=24% Similarity=0.332 Sum_probs=194.1
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCc----HHHHHHHHHHHHH-hccCC
Q 012013 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT----RELAVQIQQESTK-FGASS 199 (473)
Q Consensus 125 ~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt----~~La~q~~~~~~~-~~~~~ 199 (473)
+..+.+..+..++.++++|+||||||+ .+|.+...... +....+++..|. ++||.++.+++.. ++...
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~V 150 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETELGGCV 150 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhccee
Confidence 345666777788888999999999999 57855443221 112345666684 5777777777764 44332
Q ss_pred CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchh-hhhhCCCHH-HHHHHHhh----
Q 012013 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEP-QIKKILSQ---- 273 (473)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah-~l~~~~~~~-~~~~i~~~---- 273 (473)
++.+ ....+ ...++.|+|+||++|++.+..+.. ++++++||||||| ++++.+|.. .++.++..
T Consensus 151 GY~v-------rf~~~---~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdl 219 (1294)
T PRK11131 151 GYKV-------RFNDQ---VSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDL 219 (1294)
T ss_pred ceee-------cCccc---cCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhcCCCc
Confidence 2221 11111 235689999999999999887654 8999999999999 688888764 34444432
Q ss_pred -hhcCCCCcccc------------------ccceeeEEecCc------hhhHHHHHHHHHhH--hCCCeEEEEeCChHHH
Q 012013 274 -VIIGSPDLKAN------------------HAIRQHVDIVSE------SQKYNKLVKLLEDI--MDGSRILIFMDTKKGC 326 (473)
Q Consensus 274 -~~~~~~~~~~~------------------~~i~~~~~~~~~------~~k~~~l~~~l~~~--~~~~~~lVf~~~~~~~ 326 (473)
+++.++++... ..+...+..... .+....+++.+..+ ...+.+||||+++.++
T Consensus 220 KvILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EI 299 (1294)
T PRK11131 220 KVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREI 299 (1294)
T ss_pred eEEEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHH
Confidence 33333332110 011222222211 12233333333332 2346899999999999
Q ss_pred HHHHHHHHhCCCC---eEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCC-------------
Q 012013 327 DQITRQLRMDGWP---ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF------------- 390 (473)
Q Consensus 327 ~~l~~~L~~~~~~---~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~------------- 390 (473)
+.+++.|++.++. +..+||++++.+|..+++. .|..+|||||+++++|||||+|++||+++.
T Consensus 300 e~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~ 377 (1294)
T PRK11131 300 RDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQ 377 (1294)
T ss_pred HHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcc
Confidence 9999999987665 6789999999999999886 478899999999999999999999999863
Q ss_pred --C---CCHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 391 --P---GSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 391 --p---~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
| .|.++|.||+|||||. .+|.||.+|++.+.
T Consensus 378 ~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 378 RLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred cCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 3 4668999999999999 79999999998654
No 79
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=1.7e-30 Score=261.34 Aligned_cols=268 Identities=23% Similarity=0.330 Sum_probs=192.8
Q ss_pred CCCCHHHHHHHHHHhc----CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 120 FEPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.+|+++|.+++..+.. .+..++++|||+|||++++.. +..+ ...+||||||++|+.||++.+.++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~-~~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEA-IAEL----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHH-HHHh----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 4799999999999998 889999999999999875543 3333 233999999999999999888776
Q ss_pred ccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhh-
Q 012013 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV- 274 (473)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~- 274 (473)
.... .....+++..... .. ..|+|+|.+.+.............+++|||||||++.+..++.....+....
T Consensus 104 ~~~~--~~~g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~ 175 (442)
T COG1061 104 LLLN--DEIGIYGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP 175 (442)
T ss_pred cCCc--cccceecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcccc
Confidence 5332 1233344332211 11 4799999999887531122333479999999999998776665554444332
Q ss_pred hcCC-CCccccc--c-------------------------ce--eeEE--e-c---------------------------
Q 012013 275 IIGS-PDLKANH--A-------------------------IR--QHVD--I-V--------------------------- 294 (473)
Q Consensus 275 ~~~~-~~~~~~~--~-------------------------i~--~~~~--~-~--------------------------- 294 (473)
.++- +++.... . +. ..+. . .
T Consensus 176 ~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (442)
T COG1061 176 RLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRA 255 (442)
T ss_pred eeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhH
Confidence 2221 1100000 0 00 0000 0 0
Q ss_pred ---------CchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCc
Q 012013 295 ---------SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP 365 (473)
Q Consensus 295 ---------~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~ 365 (473)
....+...+..++..+..+.+++|||.++.+++.++..+...++ +..+.+..+..+|..+++.|+.|.++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~ 334 (442)
T COG1061 256 ENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIK 334 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 00111222223333322356999999999999999999998888 88999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCC
Q 012013 366 IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 407 (473)
Q Consensus 366 iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 407 (473)
+||++.++.+|+|+|+++++|...+..|...|+||+||..|.
T Consensus 335 ~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 335 VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999999999999999993
No 80
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.2e-29 Score=263.93 Aligned_cols=291 Identities=18% Similarity=0.216 Sum_probs=216.9
Q ss_pred CCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCc
Q 012013 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (473)
Q Consensus 122 ~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~ 201 (473)
++|+-.|.+-.+.-++.-|+.++||+|||++|.+|++..++. +..|+||+||++||.|.++++..+...+++
T Consensus 81 ~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~lGL 152 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFLGL 152 (896)
T ss_pred CCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 344444444444445666899999999999999999988765 456999999999999999999999999999
Q ss_pred eEEEEEcCccCccchHHhhcCCcEEEeChHHH-HHHHHcc-Cccc-----cceeEEeecchhhhhhCC------------
Q 012013 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH-NTNL-----RRVTYLVLDEADRMLDMG------------ 262 (473)
Q Consensus 202 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-~~~l-----~~~~~vVvDEah~l~~~~------------ 262 (473)
.+.+++++.+...+... ..++|+|+||++| .+++..+ ...+ +.+.++||||||.|+=..
T Consensus 153 tv~~i~gg~~~~~r~~~--y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~ 230 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAE 230 (896)
T ss_pred eEEEEeCCCCHHHHHHH--hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCc
Confidence 99999999776544332 3689999999999 8888766 3333 589999999999764100
Q ss_pred -----------CH-------------------------------HHHHHHH-------------h-----------h---
Q 012013 263 -----------FE-------------------------------PQIKKIL-------------S-----------Q--- 273 (473)
Q Consensus 263 -----------~~-------------------------------~~~~~i~-------------~-----------~--- 273 (473)
+. ..++.++ . +
T Consensus 231 ~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~ 310 (896)
T PRK13104 231 DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALK 310 (896)
T ss_pred cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHH
Confidence 00 0011111 0 0
Q ss_pred -----------------------------------------------hhcC-----------------------------
Q 012013 274 -----------------------------------------------VIIG----------------------------- 277 (473)
Q Consensus 274 -----------------------------------------------~~~~----------------------------- 277 (473)
+.+.
T Consensus 311 A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~ 390 (896)
T PRK13104 311 AHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTAD 390 (896)
T ss_pred HHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCCh
Confidence 0000
Q ss_pred -------------CCCccccc----cceeeEEecCchhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHHHhCCCC
Q 012013 278 -------------SPDLKANH----AIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWP 339 (473)
Q Consensus 278 -------------~~~~~~~~----~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~ 339 (473)
....+.+. .-...........|+..+.+.+.+. ..+.|+||||+|++.++.++..|.+.+++
T Consensus 391 te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~ 470 (896)
T PRK13104 391 TEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIK 470 (896)
T ss_pred hHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 00000000 0011112334456777777666554 45669999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC-------------------------------------
Q 012013 340 ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV------------------------------------- 382 (473)
Q Consensus 340 ~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v------------------------------------- 382 (473)
+..+|+.+.+.+++.+.+.|+.|. |+|||++++||+||.=-
T Consensus 471 h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 548 (896)
T PRK13104 471 HQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAG 548 (896)
T ss_pred eEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcC
Confidence 999999999999999999999995 99999999999999721
Q ss_pred -CEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHH
Q 012013 383 -KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 424 (473)
Q Consensus 383 -~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 424 (473)
-+||-...+.|..--.|-.||+||.|.+|.+..|++-.|.-+
T Consensus 549 GL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 549 GLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred CCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 267777788888888899999999999999999998876533
No 81
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.7e-30 Score=266.06 Aligned_cols=303 Identities=22% Similarity=0.286 Sum_probs=219.8
Q ss_pred CCCCCCCHHHHHHHHHHhc-CCcEEEEccCCCChhHHhHHHHHHHHhcC--CCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 012013 117 AGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQ--PFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (473)
Q Consensus 117 ~~~~~~~~~Q~~~i~~i~~-~~~~l~~a~TGsGKT~~~~l~~l~~~~~~--~~~~~~~~~~vlil~Pt~~La~q~~~~~~ 193 (473)
++|.+++.+|.+++|.+.. +.++++|||||||||.+|+|.++..+.+. +.....+..++++|+|+++||.++.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 4667889999999999875 56999999999999999999999888752 11223357899999999999999999888
Q ss_pred HhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccC----ccccceeEEeecchhhhhhCCCHHHHHH
Q 012013 194 KFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN----TNLRRVTYLVLDEADRMLDMGFEPQIKK 269 (473)
Q Consensus 194 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~----~~l~~~~~vVvDEah~l~~~~~~~~~~~ 269 (473)
+-....++.+..++|+....... -..++|+|+||++ +|.+.+.. ..+..+.+||+||+|.+-+. ..+.++.
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEK-wDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEt 260 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEK-WDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLET 260 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccc-eeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHH
Confidence 87778899999999987653322 3458999999999 55554432 23567899999999988764 3555555
Q ss_pred HHhhh-------------hcCCCCccccccc------------------------eeeEEecCch---hhH-----HHHH
Q 012013 270 ILSQV-------------IIGSPDLKANHAI------------------------RQHVDIVSES---QKY-----NKLV 304 (473)
Q Consensus 270 i~~~~-------------~~~~~~~~~~~~i------------------------~~~~~~~~~~---~k~-----~~l~ 304 (473)
|+... .--+++++...++ .+.+...... ... -...
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~ 340 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYD 340 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHH
Confidence 55441 1112232222211 1222111111 111 1223
Q ss_pred HHHHhHhCCCeEEEEeCChHHHHHHHHHHHhC----C-------------------CCeEEecCCCCHHHHHHHHHHHhc
Q 012013 305 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMD----G-------------------WPALSIHGDKSQAERDWVLSEFKA 361 (473)
Q Consensus 305 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~-------------------~~~~~ihg~~~~~~r~~~~~~f~~ 361 (473)
++++.+..+..++|||.++..+-..++.|.+. | ....++|++|...+|..+.+.|..
T Consensus 341 kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~ 420 (1230)
T KOG0952|consen 341 KVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKE 420 (1230)
T ss_pred HHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhc
Confidence 44555566789999999999998888888542 1 234578999999999999999999
Q ss_pred CCCcEEEEecccccCCCCCCCCEEE----EcCCCC------CHHHHHHhhccccCCCC--CcEEEEEeccccHHH
Q 012013 362 GKSPIMTATDVAARGLDVKDVKYVI----NYDFPG------SLEDYVHRIGRTGRAGA--KGTAYTFFTAANARF 424 (473)
Q Consensus 362 g~~~iLvaT~~~~~Gidi~~v~~Vi----~~~~p~------s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~~~~~ 424 (473)
|.++||+||.+++.|+|+|+-.++| .||... .+.+.+|.+|||||..- .|.++++-+.+....
T Consensus 421 G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~ 495 (1230)
T KOG0952|consen 421 GHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDH 495 (1230)
T ss_pred CCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHH
Confidence 9999999999999999999766666 344322 47788999999999753 487777766654433
No 82
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=3.1e-30 Score=237.70 Aligned_cols=304 Identities=22% Similarity=0.390 Sum_probs=228.7
Q ss_pred cCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 012013 103 DVGFPDYVMQEIS-KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (473)
Q Consensus 103 ~~~l~~~~~~~l~-~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 181 (473)
+++.+....+.|+ .+...+++|.|..+|+..+.+.+++++.|||.||+++|.+|++.. ...+||+||.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~pl 143 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICPL 143 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeechh
Confidence 4667777777776 356678999999999999999999999999999999999999865 4569999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH-------hhcCCcEEEeChHHHHH---HHHc--cCccccceeE
Q 012013 182 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD-------LQKGVEIVIATPGRLID---MLES--HNTNLRRVTY 249 (473)
Q Consensus 182 ~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~-------~~~~~~Iiv~Tp~~l~~---~l~~--~~~~l~~~~~ 249 (473)
..|++...-.++.++ +....+....+. +.... ......+++.||+++.. ++.+ .......+.+
T Consensus 144 islmedqil~lkqlg----i~as~lnanssk-e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 144 ISLMEDQILQLKQLG----IDASMLNANSSK-EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred HHHHHHHHHHHHHhC----cchhhccCcccH-HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 999988888888776 333333222222 11111 12346799999999853 2222 1223456899
Q ss_pred EeecchhhhhhCC--CHHHHHHH--Hhh----hh-cCC---------------------CCccc---cccceeeEEec--
Q 012013 250 LVLDEADRMLDMG--FEPQIKKI--LSQ----VI-IGS---------------------PDLKA---NHAIRQHVDIV-- 294 (473)
Q Consensus 250 vVvDEah~l~~~~--~~~~~~~i--~~~----~~-~~~---------------------~~~~~---~~~i~~~~~~~-- 294 (473)
+.+||+|+...|+ |+++...+ +.. +. ++- .++.+ ..++...+...
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPG 298 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCC
Confidence 9999999999987 66665443 221 00 000 00000 11222222211
Q ss_pred CchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 012013 295 SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 374 (473)
Q Consensus 295 ~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~ 374 (473)
.+.+-...+..++..-..+..-||||-+.+.|+.++..|+..|+.+..+|..|.+.++.-+-+.|-+|+++|+|||-+++
T Consensus 299 n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafg 378 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFG 378 (695)
T ss_pred ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeec
Confidence 12333445555555555566889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCCCHHHHHH-------------------------------------------hhccccCCCCCc
Q 012013 375 RGLDVKDVKYVINYDFPGSLEDYVH-------------------------------------------RIGRTGRAGAKG 411 (473)
Q Consensus 375 ~Gidi~~v~~Vi~~~~p~s~~~~~Q-------------------------------------------r~GR~gR~g~~g 411 (473)
+|||-|+|++|||..+|.|++.|.| ..||+||.+.+.
T Consensus 379 mgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a 458 (695)
T KOG0353|consen 379 MGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKA 458 (695)
T ss_pred ccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcc
Confidence 9999999999999999999999999 669999999999
Q ss_pred EEEEEeccccH
Q 012013 412 TAYTFFTAANA 422 (473)
Q Consensus 412 ~~~~~~~~~~~ 422 (473)
.|+++|.-.|.
T Consensus 459 ~cilyy~~~di 469 (695)
T KOG0353|consen 459 DCILYYGFADI 469 (695)
T ss_pred cEEEEechHHH
Confidence 99999986554
No 83
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=1.8e-28 Score=245.10 Aligned_cols=318 Identities=19% Similarity=0.266 Sum_probs=232.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 012013 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (473)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 179 (473)
....+.+.+...=-++||..|++++..|... .+-++++..|||||++++++++..+.. |..+.+++
T Consensus 247 ~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMA 318 (677)
T COG1200 247 ANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMA 318 (677)
T ss_pred ccHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEec
Confidence 3445555554433458999999999998853 256999999999999999999888766 78899999
Q ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccch---HHhhc-CCcEEEeChHHHHHHHHccCccccceeEEeecch
Q 012013 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 255 (473)
Q Consensus 180 Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEa 255 (473)
||..||.|.++.+.++....++++..++|........ ..+.+ ..+|+|+| +-|..+...+.++.+||+||=
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEecc
Confidence 9999999999999999999999999999877654332 33334 48999999 334445667889999999999
Q ss_pred hhhhhCCCHHHHHHHHh---hhhcCCCC---------------cccc----ccceeeEEecCchhhHHHH-HHHHHhHhC
Q 012013 256 DRMLDMGFEPQIKKILS---QVIIGSPD---------------LKAN----HAIRQHVDIVSESQKYNKL-VKLLEDIMD 312 (473)
Q Consensus 256 h~l~~~~~~~~~~~i~~---~~~~~~~~---------------~~~~----~~i~~~~~~~~~~~k~~~l-~~~l~~~~~ 312 (473)
||+.-.. +..++.--. .+.+.+++ .+.. .........+-...+...+ ..+..++..
T Consensus 394 HRFGV~Q-R~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~ 472 (677)
T COG1200 394 HRFGVHQ-RLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAK 472 (677)
T ss_pred ccccHHH-HHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHc
Confidence 9864221 111111111 11111111 1110 0111111122222344444 445556667
Q ss_pred CCeEEEEeCChHHH--------HHHHHHHHh--CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 012013 313 GSRILIFMDTKKGC--------DQITRQLRM--DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 382 (473)
Q Consensus 313 ~~~~lVf~~~~~~~--------~~l~~~L~~--~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v 382 (473)
+.++.|.|+-+++. ..+++.|+. .++++..+||.|+..++++++++|++|+++|||||.+.+.|||+|++
T Consensus 473 GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnA 552 (677)
T COG1200 473 GRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNA 552 (677)
T ss_pred CCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCC
Confidence 77999999977644 455566653 25678999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCC-CCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCC
Q 012013 383 KYVINYDFP-GSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 437 (473)
Q Consensus 383 ~~Vi~~~~p-~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 437 (473)
++.|+.+.- .-.++.-|-.||+||.+..+.|++++.+...+..+.=++++.+...
T Consensus 553 TvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~D 608 (677)
T COG1200 553 TVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTD 608 (677)
T ss_pred eEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCC
Confidence 998877753 3578999999999999999999999999876777777788777644
No 84
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.4e-28 Score=252.47 Aligned_cols=181 Identities=18% Similarity=0.253 Sum_probs=142.2
Q ss_pred CccccCCCHHHHHHHHHhcccee-ccCCCCCccCCcccCCCCHHHHHHHH-----HCCCCCC---CHHHHHHHHHHhcCC
Q 012013 67 SPSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVMQEIS-----KAGFFEP---TPIQAQGWPMALKGR 137 (473)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~~~~f~~~~l~~~~~~~l~-----~~~~~~~---~~~Q~~~i~~i~~~~ 137 (473)
.+....+|++++.+......... .+..+.. ..-+.+.+...+.+.+. ..||..| +|+|.++++.++.++
T Consensus 31 e~~~~~lsd~eL~~kt~~~k~~l~~~~~ld~--~l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~ 108 (970)
T PRK12899 31 DEKFSSLSDDELRNKTAELKQRYQDGESLDK--LLPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHK 108 (970)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHcCCchHH--HHHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCC
Confidence 35677788887755433322111 1211110 01245678888887776 5788888 999999999999999
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchH
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 217 (473)
++++.++||+|||++|++|++..++. +..++||+||++||.|.++++..+...+++++.+++||.+...+..
T Consensus 109 gvIAeaqTGeGKTLAf~LP~l~~aL~--------g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~ 180 (970)
T PRK12899 109 GFITEMQTGEGKTLTAVMPLYLNALT--------GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKE 180 (970)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHhh--------cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 99999999999999999999988764 2248999999999999999999999999999999999998876665
Q ss_pred HhhcCCcEEEeChHHH-HHHHHccCcccc-------ceeEEeecchhhhh
Q 012013 218 DLQKGVEIVIATPGRL-IDMLESHNTNLR-------RVTYLVLDEADRML 259 (473)
Q Consensus 218 ~~~~~~~Iiv~Tp~~l-~~~l~~~~~~l~-------~~~~vVvDEah~l~ 259 (473)
.+ .++|+|+||++| .+++..+...++ .+.++||||||.|+
T Consensus 181 ~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 181 IY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred Hc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 44 589999999999 999987755544 45899999999765
No 85
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.7e-28 Score=255.14 Aligned_cols=289 Identities=21% Similarity=0.260 Sum_probs=220.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 200 (473)
.|++.|.-+.-.+.+| -|+.++||+|||+++.+|++...+. +..|-|++||..||.|.++++..+...++
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 5777787776655554 5889999999999999999755554 34577999999999999999999999999
Q ss_pred ceEEEEEcCccCccchHHhhcCCcEEEeChHHH-HHHHHccC------ccccceeEEeecchhhhhhCC-----------
Q 012013 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLRRVTYLVLDEADRMLDMG----------- 262 (473)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~~~~~vVvDEah~l~~~~----------- 262 (473)
+++.+++++.+...+.... .++|+|+||+.| .++|.... ..++.+.++||||||.|+=..
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 9999999988765544433 489999999999 88887553 236779999999999764100
Q ss_pred -----CHHHHHHHHhh----------------------------------------------------------------
Q 012013 263 -----FEPQIKKILSQ---------------------------------------------------------------- 273 (473)
Q Consensus 263 -----~~~~~~~i~~~---------------------------------------------------------------- 273 (473)
+...+..+...
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 00000111000
Q ss_pred -----------------------------------hhcCC----------------------------------------
Q 012013 274 -----------------------------------VIIGS---------------------------------------- 278 (473)
Q Consensus 274 -----------------------------------~~~~~---------------------------------------- 278 (473)
+.+..
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 388 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL 388 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC
Confidence 00000
Q ss_pred --CCcccccc-c---eeeEEecCchhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHH
Q 012013 279 --PDLKANHA-I---RQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAE 351 (473)
Q Consensus 279 --~~~~~~~~-i---~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~ 351 (473)
...+.+.. + ...........|+..+.+.+.+. ..+.++||||+|++.++.++..|.+.++++..+|+. +.+
T Consensus 389 ~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~e 466 (830)
T PRK12904 389 DVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHE 466 (830)
T ss_pred CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHH
Confidence 00000000 0 01122334567888888888664 345699999999999999999999999999999996 789
Q ss_pred HHHHHHHHhcCCCcEEEEecccccCCCCCCC--------------------------------------CEEEEcCCCCC
Q 012013 352 RDWVLSEFKAGKSPIMTATDVAARGLDVKDV--------------------------------------KYVINYDFPGS 393 (473)
Q Consensus 352 r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v--------------------------------------~~Vi~~~~p~s 393 (473)
|+..+..|..+...|+|||++++||+||+-- -|||-...+.|
T Consensus 467 REa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhes 546 (830)
T PRK12904 467 REAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHES 546 (830)
T ss_pred HHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCch
Confidence 9999999999999999999999999999742 26888888999
Q ss_pred HHHHHHhhccccCCCCCcEEEEEeccccHH
Q 012013 394 LEDYVHRIGRTGRAGAKGTAYTFFTAANAR 423 (473)
Q Consensus 394 ~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 423 (473)
..--.|-.||+||.|.+|.+..|++-.|.-
T Consensus 547 rRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 547 RRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred HHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 999999999999999999999999887653
No 86
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=7.3e-29 Score=269.19 Aligned_cols=280 Identities=22% Similarity=0.275 Sum_probs=194.8
Q ss_pred HHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE
Q 012013 127 AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCI 206 (473)
Q Consensus 127 ~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~ 206 (473)
.+.+..+..++.+|++|+||||||+ .+|.+..-... +...+++++.|.|.-|..+++.+.+.. +..+...
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~ 142 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEK 142 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHHHh---CCCcceE
Confidence 3566667777888999999999998 56765443221 123467788899988887777766543 2223233
Q ss_pred EcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchh-hhhhCCCHHH-HHHHHhh-----hhcCCC
Q 012013 207 YGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQ-----VIIGSP 279 (473)
Q Consensus 207 ~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah-~l~~~~~~~~-~~~i~~~-----~~~~~~ 279 (473)
.|.....+. .....+.|.|+|++.|++.+..+. .+.++++||||||| ++++.+|.-. ++.++.. +.+.++
T Consensus 143 VGY~vR~~~--~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSA 219 (1283)
T TIGR01967 143 VGYKVRFHD--QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSA 219 (1283)
T ss_pred EeeEEcCCc--ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeC
Confidence 332111111 123467899999999999988765 48899999999999 6888777653 4555432 233333
Q ss_pred Ccccc------------------ccceeeEEecCc------hhhHHHHHHHHHhHh--CCCeEEEEeCChHHHHHHHHHH
Q 012013 280 DLKAN------------------HAIRQHVDIVSE------SQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQL 333 (473)
Q Consensus 280 ~~~~~------------------~~i~~~~~~~~~------~~k~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L 333 (473)
++... ..+...+..... ..+...+.+.+..+. ..+.+|||++++.+++.+++.|
T Consensus 220 Tld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L 299 (1283)
T TIGR01967 220 TIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEIL 299 (1283)
T ss_pred CcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHH
Confidence 32110 011111111111 123344445454433 3468999999999999999999
Q ss_pred HhCC---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCC------------------C
Q 012013 334 RMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP------------------G 392 (473)
Q Consensus 334 ~~~~---~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p------------------~ 392 (473)
++.+ +.+..+||++++.+|..+++.+ +..+|||||+++++|||||+|++||+++.+ .
T Consensus 300 ~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~I 377 (1283)
T TIGR01967 300 RKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPI 377 (1283)
T ss_pred HhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccC
Confidence 8764 4578899999999999986654 347899999999999999999999999843 3
Q ss_pred CHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 393 SLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 393 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
|.++|.||.||+||.+ +|.||.++++.+.
T Consensus 378 Skasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 378 SQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred CHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 6689999999999996 9999999997654
No 87
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=7e-28 Score=253.84 Aligned_cols=283 Identities=20% Similarity=0.274 Sum_probs=198.4
Q ss_pred CCCCHHHHHHHHHHhcC---CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 120 FEPTPIQAQGWPMALKG---RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~---~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
..|++.|.++++.+.++ +++++.++||||||.+|+.++...+.. +.++||++|+++|+.|+.+.+++..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36899999999999874 789999999999999998776665543 6789999999999999999998753
Q ss_pred cCCCceEEEEEcCccCccchHH---h-hcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCC---HHHHHH
Q 012013 197 ASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF---EPQIKK 269 (473)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~---~~~~~~ 269 (473)
+..+..++++.+..+.... + ...++|+|+|++.+. ..+.++++||+||+|....... .-..+.
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 3578888888766444332 2 235799999998763 3467899999999997643221 111122
Q ss_pred HH---h-----hhhcCCCCcccc--cc----------c--------eeeEEecCchh---------hHHHHHHHHHhHh-
Q 012013 270 IL---S-----QVIIGSPDLKAN--HA----------I--------RQHVDIVSESQ---------KYNKLVKLLEDIM- 311 (473)
Q Consensus 270 i~---~-----~~~~~~~~~~~~--~~----------i--------~~~~~~~~~~~---------k~~~l~~~l~~~~- 311 (473)
+. . .+.+.+++.... .. + ...+..++... .-..+++.+++..
T Consensus 285 va~~ra~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~ 364 (679)
T PRK05580 285 LAVVRAKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE 364 (679)
T ss_pred HHHHHhhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH
Confidence 11 1 122223221110 00 0 11122221110 1133445454444
Q ss_pred CCCeEEEEeCCh------------------------------------------------------------HHHHHHHH
Q 012013 312 DGSRILIFMDTK------------------------------------------------------------KGCDQITR 331 (473)
Q Consensus 312 ~~~~~lVf~~~~------------------------------------------------------------~~~~~l~~ 331 (473)
.+.++|||++++ ..++.+++
T Consensus 365 ~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e 444 (679)
T PRK05580 365 RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEE 444 (679)
T ss_pred cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHH
Confidence 455899998752 14567777
Q ss_pred HHHhC--CCCeEEecCCCCH--HHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCC--CCC----------HH
Q 012013 332 QLRMD--GWPALSIHGDKSQ--AERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF--PGS----------LE 395 (473)
Q Consensus 332 ~L~~~--~~~~~~ihg~~~~--~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~--p~s----------~~ 395 (473)
.|.+. +.++..+|+++.+ .+++.+++.|++|+.+|||+|+++++|+|+|++++|+.+|. +-+ ..
T Consensus 445 ~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~ 524 (679)
T PRK05580 445 ELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQ 524 (679)
T ss_pred HHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHH
Confidence 77764 7789999999864 57899999999999999999999999999999999865543 322 36
Q ss_pred HHHHhhccccCCCCCcEEEEEeccc
Q 012013 396 DYVHRIGRTGRAGAKGTAYTFFTAA 420 (473)
Q Consensus 396 ~~~Qr~GR~gR~g~~g~~~~~~~~~ 420 (473)
.|.|++||+||.+..|.+++.....
T Consensus 525 ~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 525 LLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred HHHHHHhhccCCCCCCEEEEEeCCC
Confidence 7899999999999999999765443
No 88
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.7e-28 Score=254.03 Aligned_cols=290 Identities=22% Similarity=0.300 Sum_probs=216.5
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 199 (473)
..|++.|.-+.-.+.+|+ |+...||+|||+++.+|++..++. |..|-|++||.-||.|-++++..+...+
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 367888887776665555 889999999999999999888876 7779999999999999999999999999
Q ss_pred CceEEEEEcCccCccchHHhhcCCcEEEeChHHHH-HHHHcc------CccccceeEEeecchhhhhh-CC---------
Q 012013 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRMLD-MG--------- 262 (473)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~------~~~l~~~~~vVvDEah~l~~-~~--------- 262 (473)
++.+.++.++..... +.-.-.++|+++|...|- ++|... ....+.+.+.||||+|.++= ..
T Consensus 149 Gl~vg~i~~~~~~~~--r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 149 GLTVGLNLNSMSPDE--KRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred CCeEEEeCCCCCHHH--HHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 999999987654432 222346899999987764 333221 11235688999999996530 00
Q ss_pred -------------CHHHHH------------------------------------HHH------------------hh--
Q 012013 263 -------------FEPQIK------------------------------------KIL------------------SQ-- 273 (473)
Q Consensus 263 -------------~~~~~~------------------------------------~i~------------------~~-- 273 (473)
+...+. .++ ..
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 001110 000 00
Q ss_pred -----------------------------------------------hhcCCC---------------------------
Q 012013 274 -----------------------------------------------VIIGSP--------------------------- 279 (473)
Q Consensus 274 -----------------------------------------------~~~~~~--------------------------- 279 (473)
+.+...
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 000000
Q ss_pred ---------------Ccccccc-c---eeeEEecCchhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHHHhCCCC
Q 012013 280 ---------------DLKANHA-I---RQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWP 339 (473)
Q Consensus 280 ---------------~~~~~~~-i---~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~ 339 (473)
..+.+.. + ...........|...+.+.+... ..+.++||||+++..++.++..|.+.+++
T Consensus 387 ~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~ 466 (796)
T PRK12906 387 TEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIP 466 (796)
T ss_pred HHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCC
Confidence 0000000 0 01112234456888888877654 45669999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC---CCC-----EEEEcCCCCCHHHHHHhhccccCCCCCc
Q 012013 340 ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK---DVK-----YVINYDFPGSLEDYVHRIGRTGRAGAKG 411 (473)
Q Consensus 340 ~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~---~v~-----~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g 411 (473)
+..+|+++.+.++..+...+++|. |+|||++++||+||+ +|. +||+++.|.|...|.|++||+||.|.+|
T Consensus 467 ~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G 544 (796)
T PRK12906 467 HAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPG 544 (796)
T ss_pred eeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCc
Confidence 999999999888888888887777 999999999999995 888 9999999999999999999999999999
Q ss_pred EEEEEeccccHH
Q 012013 412 TAYTFFTAANAR 423 (473)
Q Consensus 412 ~~~~~~~~~~~~ 423 (473)
.+..|++..|.-
T Consensus 545 ~s~~~~sleD~l 556 (796)
T PRK12906 545 SSRFYLSLEDDL 556 (796)
T ss_pred ceEEEEeccchH
Confidence 999999987653
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=1.1e-27 Score=254.41 Aligned_cols=321 Identities=20% Similarity=0.232 Sum_probs=203.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 012013 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 198 (473)
...|+|+|..+........-+++.||||+|||.++++.+...+.. +....++|..||+++++|+++++.++...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ------GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 347999999886554445678889999999999987765543322 12467999999999999999998764321
Q ss_pred --CCceEEEEEcCccCccchH--------------------Hhh----c---CCcEEEeChHHHHHHHHc-cCccccce-
Q 012013 199 --SKIKSTCIYGGVPKGPQVR--------------------DLQ----K---GVEIVIATPGRLIDMLES-HNTNLRRV- 247 (473)
Q Consensus 199 --~~~~~~~~~gg~~~~~~~~--------------------~~~----~---~~~Iiv~Tp~~l~~~l~~-~~~~l~~~- 247 (473)
....+...+|......... .+. + -.+|+|+|..+++..+.. ....++.+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 1235666666543211100 111 1 158999999888754332 22223333
Q ss_pred ---eEEeecchhhhhhCCCHHHHHHHHhh-------hhcCCCCccc---------------------c------------
Q 012013 248 ---TYLVLDEADRMLDMGFEPQIKKILSQ-------VIIGSPDLKA---------------------N------------ 284 (473)
Q Consensus 248 ---~~vVvDEah~l~~~~~~~~~~~i~~~-------~~~~~~~~~~---------------------~------------ 284 (473)
++|||||+|..-. -....+..++.. +++.+++++. .
T Consensus 438 La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 4899999995411 111111111111 1111111000 0
Q ss_pred -c---------cceeeEEe--c--Cc-hhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCC---CCeEEecCC
Q 012013 285 -H---------AIRQHVDI--V--SE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG---WPALSIHGD 346 (473)
Q Consensus 285 -~---------~i~~~~~~--~--~~-~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~ihg~ 346 (473)
. .....+.+ . .. ......+..+++....++++||||||++.|..+++.|++.. .++..+|+.
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 0 00011111 0 00 11223334444455567799999999999999999998764 579999999
Q ss_pred CCHHHHH----HHHHHH-hcCC---CcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCC----c---
Q 012013 347 KSQAERD----WVLSEF-KAGK---SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK----G--- 411 (473)
Q Consensus 347 ~~~~~r~----~~~~~f-~~g~---~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~----g--- 411 (473)
++..+|. ++++.| ++++ ..|||||+++++|||| +++++|....| ++.++||+||++|.+.. |
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~~rp~~~~~ 673 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRKYRPAGFEI 673 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCCCCCCCCcC
Confidence 9999984 567788 6665 4699999999999999 58999998888 88999999999998752 2
Q ss_pred -EEEEEecc-----------ccHHHHHHHHHHHHHhC---CCCCHHHHHhccC
Q 012013 412 -TAYTFFTA-----------ANARFAKELITILEEAG---QKVSPELAAMGRG 449 (473)
Q Consensus 412 -~~~~~~~~-----------~~~~~~~~l~~~l~~~~---~~~~~~l~~~~~~ 449 (473)
.++++... .+...+..-...|.+.+ ..+|+....+-+.
T Consensus 674 p~~~V~~p~~~~~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~P~~~~~lve~ 726 (878)
T PRK09694 674 PVATVLLPDGEGYGRSGYIYGNTRVLWRTEQLLEEHNAASLFFPDAYREWIES 726 (878)
T ss_pred ceEEEEeccccccCCceeecCchHHHHHHHHHHHhcCCCCcCChHHHHHHHHH
Confidence 33433211 12234455556777765 5678887777543
No 90
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=2.3e-27 Score=254.17 Aligned_cols=288 Identities=21% Similarity=0.280 Sum_probs=199.3
Q ss_pred CCCHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
+|+|||.+++.++. .+.+.|++.++|.|||+.++ .++.++... .+....+|||||. .+..||.+++.+|+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~----~~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEY----RGITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHh----cCCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68999999999875 46789999999999999844 444444331 1123458999996 67789999999998
Q ss_pred cCCCceEEEEEcCccCccchHH---hhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCC-----------
Q 012013 197 ASSKIKSTCIYGGVPKGPQVRD---LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG----------- 262 (473)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~---~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~----------- 262 (473)
+. +.++.++|.......... ....++|+|+|++.+...... ..-..+++|||||||++-+..
T Consensus 243 p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~ 318 (1033)
T PLN03142 243 PV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNENSLLSKTMRLFS 318 (1033)
T ss_pred CC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCHHHHHHHHHHHhh
Confidence 54 556666665432222111 123579999999998764322 112247899999999753211
Q ss_pred ------------------------------------CH---------------HHHHHHHhhhhcCC------CCccccc
Q 012013 263 ------------------------------------FE---------------PQIKKILSQVIIGS------PDLKANH 285 (473)
Q Consensus 263 ------------------------------------~~---------------~~~~~i~~~~~~~~------~~~~~~~ 285 (473)
|. ..+..++..+.+.. ..++.
T Consensus 319 a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp-- 396 (1033)
T PLN03142 319 TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP-- 396 (1033)
T ss_pred cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCC--
Confidence 00 00011110000000 00000
Q ss_pred cceeeE--------------------------------------------------------------EecCchhhHHHH
Q 012013 286 AIRQHV--------------------------------------------------------------DIVSESQKYNKL 303 (473)
Q Consensus 286 ~i~~~~--------------------------------------------------------------~~~~~~~k~~~l 303 (473)
.....+ ..+....|+..|
T Consensus 397 K~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lL 476 (1033)
T PLN03142 397 KKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLL 476 (1033)
T ss_pred ceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHH
Confidence 000000 011123455566
Q ss_pred HHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcC---CCcEEEEecccccCCCC
Q 012013 304 VKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG---KSPIMTATDVAARGLDV 379 (473)
Q Consensus 304 ~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g---~~~iLvaT~~~~~Gidi 379 (473)
..+|..+.. +.++|||++....++.|.++|...++.+..|+|+++..+|..+++.|+.. ...+|++|.+++.|||+
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 666665543 55999999999999999999999999999999999999999999999863 23578999999999999
Q ss_pred CCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccc
Q 012013 380 KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 420 (473)
Q Consensus 380 ~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 420 (473)
..+++||+||++|||....|++||+.|.|+...++++..-.
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt 597 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCT 597 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEe
Confidence 99999999999999999999999999999997776654433
No 91
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=244.49 Aligned_cols=286 Identities=21% Similarity=0.265 Sum_probs=211.8
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 012013 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 198 (473)
.+++.|+|.++|..+-.+.+++++|.|.+|||.++..++...+.. ..+||+.+|-++|.+|-++++..-...
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~D 198 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKD 198 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcc
Confidence 457899999999999999999999999999999988877776665 688999999999999999998865544
Q ss_pred CCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCC----------------
Q 012013 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG---------------- 262 (473)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~---------------- 262 (473)
|...+|+... ...+..+|+|.+.|..+|-++..-++.+.||||||+|.|-|..
T Consensus 199 ----VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~v 267 (1041)
T KOG0948|consen 199 ----VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNV 267 (1041)
T ss_pred ----cceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccc
Confidence 4455666554 4567899999999999999998889999999999999886532
Q ss_pred --------------CHHHHHHHHhh---hhcCCCCccccccceeeE---------EecCch-----hh------------
Q 012013 263 --------------FEPQIKKILSQ---VIIGSPDLKANHAIRQHV---------DIVSES-----QK------------ 299 (473)
Q Consensus 263 --------------~~~~~~~i~~~---~~~~~~~~~~~~~i~~~~---------~~~~~~-----~k------------ 299 (473)
|.+++-.|..+ +...... ...+.+++ .++++. +.
T Consensus 268 r~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyR---PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 268 RFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYR---PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred eEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCC---CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 55556555554 1111000 00011110 011100 00
Q ss_pred -----------------------HHHHHHHHHhHhC--CCeEEEEeCChHHHHHHHHHHHhCCC----------------
Q 012013 300 -----------------------YNKLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGW---------------- 338 (473)
Q Consensus 300 -----------------------~~~l~~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~---------------- 338 (473)
...+.++++.+.. ..++|||+-++++|+.++-.+.+..+
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nA 424 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNA 424 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHH
Confidence 1134444444443 34899999999999999988865322
Q ss_pred -----------------------CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEE----cCC-
Q 012013 339 -----------------------PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YDF- 390 (473)
Q Consensus 339 -----------------------~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~----~~~- 390 (473)
.+.++|+++-+--++-+.-.|..|-+++|+||.+++.|+|.|.-++|+- ||-
T Consensus 425 i~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~ 504 (1041)
T KOG0948|consen 425 IDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGK 504 (1041)
T ss_pred HHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCc
Confidence 2348899999999999999999999999999999999999997776662 221
Q ss_pred ---CCCHHHHHHhhccccCCCCC--cEEEEEeccc-cHHHHH
Q 012013 391 ---PGSLEDYVHRIGRTGRAGAK--GTAYTFFTAA-NARFAK 426 (473)
Q Consensus 391 ---p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~-~~~~~~ 426 (473)
+-|.-.|+||.|||||.|-+ |.|++++++. ++..++
T Consensus 505 ~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak 546 (1041)
T KOG0948|consen 505 KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAK 546 (1041)
T ss_pred ceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHH
Confidence 23677899999999999976 8888888764 443333
No 92
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=5.6e-26 Score=239.26 Aligned_cols=302 Identities=21% Similarity=0.238 Sum_probs=225.3
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CC--cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEE
Q 012013 105 GFPDYVMQEISKAGFFEPTPIQAQGWPMALK----GR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (473)
Q Consensus 105 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~----~~--~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 178 (473)
+.+..+.+.+...--.+.||-|..||..+.+ ++ |-++|+..|.|||-+++=+++..... ++.|.|+
T Consensus 578 ~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvL 649 (1139)
T COG1197 578 PPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVL 649 (1139)
T ss_pred CCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEE
Confidence 3455666666654444679999999999874 33 77999999999999988888777665 7899999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchH---Hhhc-CCcEEEeChHHHHHHHHccCccccceeEEeecc
Q 012013 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (473)
Q Consensus 179 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDE 254 (473)
|||.-||+|.++.|++-....++++..+.-=.+.+++.. .+.. ..||||+| ..+|. ....++++.+|||||
T Consensus 650 VPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT----HrLL~-kdv~FkdLGLlIIDE 724 (1139)
T COG1197 650 VPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT----HRLLS-KDVKFKDLGLLIIDE 724 (1139)
T ss_pred cccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec----hHhhC-CCcEEecCCeEEEec
Confidence 999999999999999888888888877654444444332 2333 58999999 34444 455688999999999
Q ss_pred hhhhhhCCCHHHHHHHHhhhhcCCC--C---------------cc----ccccceeeEEecCchhhHHHHHHHHHhHhCC
Q 012013 255 ADRMLDMGFEPQIKKILSQVIIGSP--D---------------LK----ANHAIRQHVDIVSESQKYNKLVKLLEDIMDG 313 (473)
Q Consensus 255 ah~l~~~~~~~~~~~i~~~~~~~~~--~---------------~~----~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~ 313 (473)
-|++.-. ..+.++.+-..+.+-+. + ++ ...+....-..+.+.+....-..+++++..+
T Consensus 725 EqRFGVk-~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~Rg 803 (1139)
T COG1197 725 EQRFGVK-HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRG 803 (1139)
T ss_pred hhhcCcc-HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcC
Confidence 9997532 23445555443211110 0 00 0001111111222233333334566777888
Q ss_pred CeEEEEeCChHHHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCC
Q 012013 314 SRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 391 (473)
Q Consensus 314 ~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p 391 (473)
+++-..+|.++..+.+++.|+.. ..++.+.||.|+..+-+.++..|.+|+.+|||||.+.+.|||||+++++|.-+..
T Consensus 804 GQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD 883 (1139)
T COG1197 804 GQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERAD 883 (1139)
T ss_pred CEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccc
Confidence 99999999999999999999875 4568899999999999999999999999999999999999999999998866543
Q ss_pred -CCHHHHHHhhccccCCCCCcEEEEEeccc
Q 012013 392 -GSLEDYVHRIGRTGRAGAKGTAYTFFTAA 420 (473)
Q Consensus 392 -~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 420 (473)
.-.++..|..||+||..+.+-||.++.+.
T Consensus 884 ~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 884 KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred cccHHHHHHhccccCCccceEEEEEeecCc
Confidence 35899999999999999989999888864
No 93
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.1e-26 Score=237.76 Aligned_cols=288 Identities=20% Similarity=0.255 Sum_probs=214.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 200 (473)
.|++.|.-+ .+.-++.-|+.++||.|||++|.+|++..++. +..|.||+|+..||.|..+++..+...++
T Consensus 82 ~~ydVQliG--gl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQLLG--GMVLDSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHHhc--chHhcCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 455555544 44445666889999999999999999988775 55599999999999999999999999999
Q ss_pred ceEEEEEcCccCccchHHhhcCCcEEEeChHHH-HHHHHcc-Cccc-----cceeEEeecchhhhhhCC-----------
Q 012013 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH-NTNL-----RRVTYLVLDEADRMLDMG----------- 262 (473)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-~~~l-----~~~~~vVvDEah~l~~~~----------- 262 (473)
+.+.++.++.... .+.-.-.++|+++||+.| .++|..+ .... +.+.++||||||.++-..
T Consensus 152 lsv~~i~~~~~~~--~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQ--EKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHH--HHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 9999998887652 222233689999999999 7887765 3222 678999999999754210
Q ss_pred ------------CHH------------------------------------HHHHHHh----------------------
Q 012013 263 ------------FEP------------------------------------QIKKILS---------------------- 272 (473)
Q Consensus 263 ------------~~~------------------------------------~~~~i~~---------------------- 272 (473)
+.. .+..++.
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 000 0011110
Q ss_pred --h--------------------------------------------------hhcCCC---------------------
Q 012013 273 --Q--------------------------------------------------VIIGSP--------------------- 279 (473)
Q Consensus 273 --~--------------------------------------------------~~~~~~--------------------- 279 (473)
+ +.+...
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence 0 000000
Q ss_pred ---------------------Cccccc----cceeeEEecCchhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHH
Q 012013 280 ---------------------DLKANH----AIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQL 333 (473)
Q Consensus 280 ---------------------~~~~~~----~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L 333 (473)
..+.+. .-...........|+.++++-+.+. ..+.++||||.+++.++.++..|
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L 469 (908)
T PRK13107 390 MTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLM 469 (908)
T ss_pred ccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHH
Confidence 000000 0000111223456777777666554 44669999999999999999999
Q ss_pred HhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC--------------------------------
Q 012013 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD-------------------------------- 381 (473)
Q Consensus 334 ~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~-------------------------------- 381 (473)
...++++..+|+.+++.++..+.+.|++|. |+|||++++||+||.=
T Consensus 470 ~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (908)
T PRK13107 470 VKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDE 547 (908)
T ss_pred HHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999 9999999999999972
Q ss_pred -----CCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 382 -----VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 382 -----v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
=-+||-...+.|..--.|-.||+||.|.+|.+..|++-.|.
T Consensus 548 V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 548 VVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 13688888888888889999999999999999999988766
No 94
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.6e-26 Score=239.82 Aligned_cols=313 Identities=19% Similarity=0.282 Sum_probs=222.8
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCC---CCCEEEEEcC
Q 012013 105 GFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG---DGPIVLVLAP 180 (473)
Q Consensus 105 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~---~~~~vlil~P 180 (473)
.+|++-..++. ++..+.++|....++++.+ .++++|||||+|||.++++.+++.+........+ ...++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 46666666654 3445899999999998876 5899999999999999999999998765432211 2347999999
Q ss_pred cHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc---CccccceeEEeecchhh
Q 012013 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH---NTNLRRVTYLVLDEADR 257 (473)
Q Consensus 181 t~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~---~~~l~~~~~vVvDEah~ 257 (473)
.++|++.|...+.+.....++.|.-.+|......+. -....|+|+||++ +|.+.++ ....+-++++|+||+|.
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK-~DiITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEK-WDIITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccch-hhhhhcccCchhHHHHHHHHhhhhhhh
Confidence 999999999999998889999999999986643221 2346899999999 5555544 23345688999999998
Q ss_pred hhhCCCHHHHHHHHhhh-------------hcCCCCccccc-----------------------cceeeEEecCc---hh
Q 012013 258 MLDMGFEPQIKKILSQV-------------IIGSPDLKANH-----------------------AIRQHVDIVSE---SQ 298 (473)
Q Consensus 258 l~~~~~~~~~~~i~~~~-------------~~~~~~~~~~~-----------------------~i~~~~~~~~~---~~ 298 (473)
+-|. ..+.+..|.... .--+++++... .+.|.+.-+.. ..
T Consensus 449 LhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 449 LHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred cccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 7553 355555554431 11122222221 22333332222 12
Q ss_pred hHH----HHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhC-------------------------------------C
Q 012013 299 KYN----KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD-------------------------------------G 337 (473)
Q Consensus 299 k~~----~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------------------------------------~ 337 (473)
+.+ ...+-+-++...+++|||+.+++++.+.++.++.. .
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp 607 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP 607 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh
Confidence 222 22232333344579999999999888887777521 3
Q ss_pred CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEE----EcCC------CCCHHHHHHhhccccCC
Q 012013 338 WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----NYDF------PGSLEDYVHRIGRTGRA 407 (473)
Q Consensus 338 ~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi----~~~~------p~s~~~~~Qr~GR~gR~ 407 (473)
+.+.++|++|+..+|..+++.|..|.++|||+|.++++|+|+|..+++| .||+ +-++.+..||.|||||.
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 5577999999999999999999999999999999999999999888777 4554 34789999999999998
Q ss_pred CCC--cEEEEEeccccHHH
Q 012013 408 GAK--GTAYTFFTAANARF 424 (473)
Q Consensus 408 g~~--g~~~~~~~~~~~~~ 424 (473)
+.+ |..++.-..++..+
T Consensus 688 ~~D~~gegiiit~~se~qy 706 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDHSELQY 706 (1674)
T ss_pred ccCcCCceeeccCchHhhh
Confidence 765 55555444444333
No 95
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=6.7e-27 Score=237.34 Aligned_cols=283 Identities=20% Similarity=0.246 Sum_probs=201.0
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 012013 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 198 (473)
-++|.++|++||-++..|.++++.|+|.+|||+++..++...-. ++.++++.+|-++|.+|.+..|+.-...
T Consensus 295 pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~--------h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK--------HMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh--------hccceEecchhhhhccchHHHHHHhccc
Confidence 34799999999999999999999999999999997765543322 2788999999999999999998875444
Q ss_pred CCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCC----------------
Q 012013 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG---------------- 262 (473)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~---------------- 262 (473)
.+ .++|+... ...+.++|+|.+.|..+|-++...++++.+|||||+|.+.|..
T Consensus 367 vg----LlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 367 VG----LLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred cc----eeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 33 67777654 5567899999999999999998889999999999999877643
Q ss_pred --------------CHHHHHHHHhh-h-hcCCCC--------------cc---------cc-------ccce---eeEE-
Q 012013 263 --------------FEPQIKKILSQ-V-IIGSPD--------------LK---------AN-------HAIR---QHVD- 292 (473)
Q Consensus 263 --------------~~~~~~~i~~~-~-~~~~~~--------------~~---------~~-------~~i~---~~~~- 292 (473)
|..++-.+... + .+.+.. +. .. .... ..+.
T Consensus 436 ~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~ 515 (1248)
T KOG0947|consen 436 NFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV 515 (1248)
T ss_pred eEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc
Confidence 22333222221 0 000000 00 00 0000 0000
Q ss_pred -----------------------------ecCchhhHHHHHHHHHhHhCC--CeEEEEeCChHHHHHHHHHHHhCC----
Q 012013 293 -----------------------------IVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQLRMDG---- 337 (473)
Q Consensus 293 -----------------------------~~~~~~k~~~l~~~l~~~~~~--~~~lVf~~~~~~~~~l~~~L~~~~---- 337 (473)
......+.....+++..+... -|+||||-+++.|++.++.|...+
T Consensus 516 ~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~ 595 (1248)
T KOG0947|consen 516 EKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDS 595 (1248)
T ss_pred ccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccc
Confidence 000001101344444443332 389999999999999999995431
Q ss_pred -----------------------------------CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 012013 338 -----------------------------------WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 382 (473)
Q Consensus 338 -----------------------------------~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v 382 (473)
-.+.++||++-+--++-++-.|..|-++||+||.++++|||.|.-
T Consensus 596 ~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPAR 675 (1248)
T KOG0947|consen 596 KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPAR 675 (1248)
T ss_pred hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCce
Confidence 124589999999999999999999999999999999999999976
Q ss_pred CEEEEcCC--------CCCHHHHHHhhccccCCCCC--cEEEEEeccc
Q 012013 383 KYVINYDF--------PGSLEDYVHRIGRTGRAGAK--GTAYTFFTAA 420 (473)
Q Consensus 383 ~~Vi~~~~--------p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 420 (473)
++|+.--. --.+-+|.||+|||||.|-+ |+++++....
T Consensus 676 tvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 676 TVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 66662211 12578999999999998865 7666665543
No 96
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=2.7e-26 Score=233.58 Aligned_cols=264 Identities=22% Similarity=0.306 Sum_probs=176.2
Q ss_pred EEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchH--
Q 012013 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR-- 217 (473)
Q Consensus 140 l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~-- 217 (473)
++.++||||||.+|+..+ ..+... +.++||++|+++|+.|+.+.+++.. +..+..++++....+..+
T Consensus 1 LL~g~TGsGKT~v~l~~i-~~~l~~-------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAI-EKVLAL-------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHH-HHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 467999999999986554 443332 6789999999999999999998753 346777888766544322
Q ss_pred -Hhh-cCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCC---CH---HHHHHHHhh-----hhcCCCCcccc
Q 012013 218 -DLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG---FE---PQIKKILSQ-----VIIGSPDLKAN 284 (473)
Q Consensus 218 -~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~---~~---~~~~~i~~~-----~~~~~~~~~~~ 284 (473)
.+. ..++|+|+|+..+. ..+.++++|||||+|...-.. .. ..+..+... +.+.+++....
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 222 35789999987653 246789999999999765322 11 111111111 22222221100
Q ss_pred --c------------------cceeeEEecC--chh----hHHHHHHHHHhHh-CCCeEEEEeCChHH------------
Q 012013 285 --H------------------AIRQHVDIVS--ESQ----KYNKLVKLLEDIM-DGSRILIFMDTKKG------------ 325 (473)
Q Consensus 285 --~------------------~i~~~~~~~~--~~~----k~~~l~~~l~~~~-~~~~~lVf~~~~~~------------ 325 (473)
. .....+.+++ ... .-..+++.+++.. .++++|||+|++..
T Consensus 143 s~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 143 SYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred HHHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 0 0001111111 111 1134555554443 45689999776532
Q ss_pred ------------------------------------------------HHHHHHHHHhC--CCCeEEecCCCCHHHH--H
Q 012013 326 ------------------------------------------------CDQITRQLRMD--GWPALSIHGDKSQAER--D 353 (473)
Q Consensus 326 ------------------------------------------------~~~l~~~L~~~--~~~~~~ihg~~~~~~r--~ 353 (473)
.+.+++.|.+. +.++..+|++++...+ +
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 47777788765 6789999999987665 8
Q ss_pred HHHHHHhcCCCcEEEEecccccCCCCCCCCEEE--EcCCCC----------CHHHHHHhhccccCCCCCcEEEEEe-ccc
Q 012013 354 WVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI--NYDFPG----------SLEDYVHRIGRTGRAGAKGTAYTFF-TAA 420 (473)
Q Consensus 354 ~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi--~~~~p~----------s~~~~~Qr~GR~gR~g~~g~~~~~~-~~~ 420 (473)
.+++.|++|+.+|||+|+++++|+|+|++++|+ ++|..- ....|.|++||+||.+..|.+++.. .++
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 899999999999999999999999999999886 444321 2467899999999999999988654 444
Q ss_pred c
Q 012013 421 N 421 (473)
Q Consensus 421 ~ 421 (473)
+
T Consensus 383 ~ 383 (505)
T TIGR00595 383 H 383 (505)
T ss_pred C
Confidence 4
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=7.3e-26 Score=247.03 Aligned_cols=280 Identities=18% Similarity=0.235 Sum_probs=179.8
Q ss_pred CCCCHHHHHHHHHHhc-----CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 012013 120 FEPTPIQAQGWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~-----~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 194 (473)
..|+++|.+|+..+.. .+.++++++||||||.+++ .++..+.... ...++|||+|+++|+.|+.+.|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~~-----~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKAK-----RFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhcC-----ccCeEEEEecHHHHHHHHHHHHHh
Confidence 4689999999987752 3678999999999998744 3444444321 246899999999999999999998
Q ss_pred hccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc-----CccccceeEEeecchhhhhh---------
Q 012013 195 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----NTNLRRVTYLVLDEADRMLD--------- 260 (473)
Q Consensus 195 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-----~~~l~~~~~vVvDEah~l~~--------- 260 (473)
+..........+++...... ........|+|+|+++|...+... ...+..+++||+||||+...
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 75332211111111110000 111234689999999998765321 13467899999999999531
Q ss_pred CCC------HHHHHHHHhhh---hcC---CCC------------------------cc---cccccee------------
Q 012013 261 MGF------EPQIKKILSQV---IIG---SPD------------------------LK---ANHAIRQ------------ 289 (473)
Q Consensus 261 ~~~------~~~~~~i~~~~---~~~---~~~------------------------~~---~~~~i~~------------ 289 (473)
..| ....+.++..+ .++ +|. +. ....+..
T Consensus 564 ~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~ 643 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKG 643 (1123)
T ss_pred hccchhhhHHHHHHHHHhhcCccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccccc
Confidence 011 23344444320 000 000 00 0000000
Q ss_pred -----------eEE--ecCch---------------hhHHHHHH-HHHhHh--CCCeEEEEeCChHHHHHHHHHHHhC--
Q 012013 290 -----------HVD--IVSES---------------QKYNKLVK-LLEDIM--DGSRILIFMDTKKGCDQITRQLRMD-- 336 (473)
Q Consensus 290 -----------~~~--~~~~~---------------~k~~~l~~-~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~-- 336 (473)
.+. ...+. .....+.+ ++..+. ..+|+||||.++++|+.+++.|.+.
T Consensus 644 e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~ 723 (1123)
T PRK11448 644 EEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFK 723 (1123)
T ss_pred chhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 000 00000 00011111 121111 2359999999999999999888652
Q ss_pred ----CC---CeEEecCCCCHHHHHHHHHHHhcCCC-cEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCC
Q 012013 337 ----GW---PALSIHGDKSQAERDWVLSEFKAGKS-PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 408 (473)
Q Consensus 337 ----~~---~~~~ihg~~~~~~r~~~~~~f~~g~~-~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 408 (473)
++ .+..+||+.+ ++..++++|+++.. +|+|+++++.+|+|+|.+.+||+++++.|...|+||+||+.|.-
T Consensus 724 ~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 724 KKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred hhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 22 3567898875 46779999999877 58999999999999999999999999999999999999999974
Q ss_pred C
Q 012013 409 A 409 (473)
Q Consensus 409 ~ 409 (473)
.
T Consensus 802 ~ 802 (1123)
T PRK11448 802 P 802 (1123)
T ss_pred c
Confidence 3
No 98
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.94 E-value=1.2e-25 Score=204.59 Aligned_cols=170 Identities=51% Similarity=0.866 Sum_probs=151.8
Q ss_pred cccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 101 f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
|+++++++.+.+.+...++..|+++|.++++.+.+++++++++|||+|||++|++|++..+.... ...++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999887642 123789999999
Q ss_pred cHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhh
Q 012013 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (473)
Q Consensus 181 t~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~ 260 (473)
+++|+.|+.+.+..+....++.+..++|+.........+..+++|+|+||++|.+++.+....+.+++++|+||+|.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988778889999998877666666666889999999999999988877889999999999999998
Q ss_pred CCCHHHHHHHHhh
Q 012013 261 MGFEPQIKKILSQ 273 (473)
Q Consensus 261 ~~~~~~~~~i~~~ 273 (473)
.++...+..+...
T Consensus 158 ~~~~~~~~~~~~~ 170 (203)
T cd00268 158 MGFEDQIREILKL 170 (203)
T ss_pred cChHHHHHHHHHh
Confidence 8888888877664
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=6.1e-24 Score=194.31 Aligned_cols=278 Identities=20% Similarity=0.243 Sum_probs=192.3
Q ss_pred CCCHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
+++|.|+.+-..+. +.++.++.|-||+|||.. +.+.++..+.+ |.++.+.+|+...+.+++.+++.-.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 68999988776654 578999999999999976 66777777765 7889999999999999999998854
Q ss_pred cCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhC---CCHHHHHHHHh-
Q 012013 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM---GFEPQIKKILS- 272 (473)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~---~~~~~~~~i~~- 272 (473)
.. ..+.++||+.... -...++|+|..+|+++-+ .|+++|+||+|.+.-. ...-.+++-..
T Consensus 169 ~~--~~I~~Lyg~S~~~-------fr~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~ 232 (441)
T COG4098 169 SN--CDIDLLYGDSDSY-------FRAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKK 232 (441)
T ss_pred cc--CCeeeEecCCchh-------ccccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhcc
Confidence 43 5678888887652 225899999999988743 4889999999965311 11111111110
Q ss_pred --hhhcCCCCcc----------------------ccccceeeEEecCch-hhH------HHHHHHHHhHhC-CCeEEEEe
Q 012013 273 --QVIIGSPDLK----------------------ANHAIRQHVDIVSES-QKY------NKLVKLLEDIMD-GSRILIFM 320 (473)
Q Consensus 273 --~~~~~~~~~~----------------------~~~~i~~~~~~~~~~-~k~------~~l~~~l~~~~~-~~~~lVf~ 320 (473)
..+.-+++.+ ...-+...+...... .++ ..|..+|+.... +.+++||+
T Consensus 233 ~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~ 312 (441)
T COG4098 233 EGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFF 312 (441)
T ss_pred cCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEe
Confidence 0111111100 000011111122221 222 256777776554 45999999
Q ss_pred CChHHHHHHHHHHHh-CC-CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCC--CCHHH
Q 012013 321 DTKKGCDQITRQLRM-DG-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP--GSLED 396 (473)
Q Consensus 321 ~~~~~~~~l~~~L~~-~~-~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p--~s~~~ 396 (473)
++++..+.++..|++ .. ..+..+|+. ...|.+.++.|++|+.++||+|.+++||+.+|+++++|.-.-- .+.+.
T Consensus 313 p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesa 390 (441)
T COG4098 313 PEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESA 390 (441)
T ss_pred cchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHH
Confidence 999999999999944 33 345678876 3468888999999999999999999999999999986654433 46889
Q ss_pred HHHhhccccCCCC--CcEEEEEeccccHHH
Q 012013 397 YVHRIGRTGRAGA--KGTAYTFFTAANARF 424 (473)
Q Consensus 397 ~~Qr~GR~gR~g~--~g~~~~~~~~~~~~~ 424 (473)
.+|..||+||.-. +|....|-......+
T Consensus 391 LVQIaGRvGRs~~~PtGdv~FFH~G~skaM 420 (441)
T COG4098 391 LVQIAGRVGRSLERPTGDVLFFHYGKSKAM 420 (441)
T ss_pred HHHHhhhccCCCcCCCCcEEEEeccchHHH
Confidence 9999999999543 366555544444433
No 100
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=9.9e-25 Score=229.81 Aligned_cols=285 Identities=22% Similarity=0.306 Sum_probs=202.1
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hcc
Q 012013 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGA 197 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~-~~~ 197 (473)
-+.|.++|++++..+..+.+++++||||+|||+++..++...+.. +.++++++|.++|.+|.+.++.. |++
T Consensus 117 ~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 117 PFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHHHhhh
Confidence 347999999999999999999999999999999988776655554 67799999999999999988765 442
Q ss_pred CCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhh----
Q 012013 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ---- 273 (473)
Q Consensus 198 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~---- 273 (473)
. .-.+..++|+... ..++.++|+|.+.|.+++..+...+..+.+|||||+|.|.|.......+.++..
T Consensus 189 v-~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 189 V-ADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDH 260 (1041)
T ss_pred h-hhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCC
Confidence 2 2224555665544 567899999999999999999888999999999999999887644444444332
Q ss_pred --hhcCCCCcccc------------------------ccceeeE-------EecCchhh--------HH-HH--------
Q 012013 274 --VIIGSPDLKAN------------------------HAIRQHV-------DIVSESQK--------YN-KL-------- 303 (473)
Q Consensus 274 --~~~~~~~~~~~------------------------~~i~~~~-------~~~~~~~k--------~~-~l-------- 303 (473)
+..-+++.... ..+.+++ ..+++..+ .. .+
T Consensus 261 v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~ 340 (1041)
T COG4581 261 VRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVR 340 (1041)
T ss_pred CcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhcc
Confidence 00001110000 0011111 01111110 00 00
Q ss_pred ---------------------------HHHHHhHh--CCCeEEEEeCChHHHHHHHHHHHhC------------------
Q 012013 304 ---------------------------VKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMD------------------ 336 (473)
Q Consensus 304 ---------------------------~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~------------------ 336 (473)
.+++..+. ...++|+|+-+++.|+..+..+...
T Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~ 420 (1041)
T COG4581 341 ETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDH 420 (1041)
T ss_pred ccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHH
Confidence 11222221 2238999999999999888777421
Q ss_pred ----------CCC-------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEE----EcC
Q 012013 337 ----------GWP-------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----NYD 389 (473)
Q Consensus 337 ----------~~~-------------~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi----~~~ 389 (473)
+.+ +.++|++|-+..|..+...|..|-++|++||.+++.|+|.|.-++|+ .+|
T Consensus 421 ~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~d 500 (1041)
T COG4581 421 AIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFD 500 (1041)
T ss_pred HHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEec
Confidence 111 22789999999999999999999999999999999999999766665 222
Q ss_pred ----CCCCHHHHHHhhccccCCCCC--cEEEEEecc
Q 012013 390 ----FPGSLEDYVHRIGRTGRAGAK--GTAYTFFTA 419 (473)
Q Consensus 390 ----~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~ 419 (473)
.+-++..|.|+.|||||.|.+ |.+++.-.+
T Consensus 501 G~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 501 GNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred CCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 123689999999999999987 777776443
No 101
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.93 E-value=2.6e-24 Score=214.52 Aligned_cols=299 Identities=21% Similarity=0.293 Sum_probs=208.7
Q ss_pred CCCHHHHHHHHHHhc----CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 121 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
++++||.+.++++.+ +-++|+..++|.|||+. .+.++.++.... ...|| .||+||...|. .|.+++++|.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~---~~~GP-fLVi~P~StL~-NW~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK---GIPGP-FLVIAPKSTLD-NWMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc---CCCCC-eEEEeeHhhHH-HHHHHHHHhC
Confidence 689999999998764 56899999999999987 445555554421 11244 78889987775 6999999998
Q ss_pred cCCCceEEEEEcCccCccchH-Hh--hcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCC--HHHHHHHH
Q 012013 197 ASSKIKSTCIYGGVPKGPQVR-DL--QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKIL 271 (473)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~-~~--~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~--~~~~~~i~ 271 (473)
+. +++++++|......... .+ ....+|+|+|++..+.--. ...--...|+||||||++-+..- ...++.+.
T Consensus 241 P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~ 316 (971)
T KOG0385|consen 241 PS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAHRIKNEKSKLSKILREFK 316 (971)
T ss_pred CC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhhhhcchhhHHHHHHHHhc
Confidence 76 77888888764333221 11 2367999999998775411 11112367999999998643220 00011100
Q ss_pred h--------------------h----------------------------------------------------------
Q 012013 272 S--------------------Q---------------------------------------------------------- 273 (473)
Q Consensus 272 ~--------------------~---------------------------------------------------------- 273 (473)
. .
T Consensus 317 ~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKk 396 (971)
T KOG0385|consen 317 TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKK 396 (971)
T ss_pred ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcc
Confidence 0 0
Q ss_pred ------------------hh------cCCCCc---cccccc-----------------------eeeEEecCchhhHHHH
Q 012013 274 ------------------VI------IGSPDL---KANHAI-----------------------RQHVDIVSESQKYNKL 303 (473)
Q Consensus 274 ------------------~~------~~~~~~---~~~~~i-----------------------~~~~~~~~~~~k~~~l 303 (473)
+. +..... ....++ ...-..+..+.|+..|
T Consensus 397 E~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 397 ELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVL 476 (971)
T ss_pred eeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehH
Confidence 00 000000 000000 0000112344566677
Q ss_pred HHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCC---CcEEEEecccccCCCC
Q 012013 304 VKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK---SPIMTATDVAARGLDV 379 (473)
Q Consensus 304 ~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~---~~iLvaT~~~~~Gidi 379 (473)
.++|..+.. +++||||.+-....+.|.+++.-.+|....|.|.++-++|...++.|.... .-+|++|.+.+-|||+
T Consensus 477 DkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL 556 (971)
T KOG0385|consen 477 DKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINL 556 (971)
T ss_pred HHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccc
Confidence 777766654 569999999999999999999999999999999999999999999999754 3368999999999999
Q ss_pred CCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHH
Q 012013 380 KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 429 (473)
Q Consensus 380 ~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 429 (473)
..+++||.||..|||..-.|...||+|.||...+++|-...+...-..++
T Consensus 557 ~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~Iv 606 (971)
T KOG0385|consen 557 TAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIV 606 (971)
T ss_pred ccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHH
Confidence 99999999999999999999999999999998777765554444333333
No 102
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=5.5e-24 Score=217.72 Aligned_cols=314 Identities=20% Similarity=0.301 Sum_probs=229.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHH--HHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 012013 106 FPDYVMQEISKAGFFEPTPIQAQGW--PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (473)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i--~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~ 183 (473)
++.......+.+|...++.||.+++ +.++.++++|..+||+.|||+++.+-++...+.. ...++.+.|-..
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~vs 280 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYVS 280 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecceee
Confidence 3444444556778889999999998 5688899999999999999999999888887764 566899999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc--CccccceeEEeecchhhhhhC
Q 012013 184 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDM 261 (473)
Q Consensus 184 La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--~~~l~~~~~vVvDEah~l~~~ 261 (473)
.+..-...+..|....++.+-+.+|..+.... .+..++.|||.++-..++++- .-.+..+.+|||||.|.+.+.
T Consensus 281 iv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 281 IVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred hhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecc
Confidence 88888888999999999999888866554322 334589999999866554431 223567899999999999999
Q ss_pred CCHHHHHHHHhhhhcC-----------CCCccccccce------------------eeEEecC---chhhHHHHHH----
Q 012013 262 GFEPQIKKILSQVIIG-----------SPDLKANHAIR------------------QHVDIVS---ESQKYNKLVK---- 305 (473)
Q Consensus 262 ~~~~~~~~i~~~~~~~-----------~~~~~~~~~i~------------------~~~~~~~---~~~k~~~l~~---- 305 (473)
+....++.++..+... ++++.....+. ..+.+.. +..+...+.+
T Consensus 357 ~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l 436 (1008)
T KOG0950|consen 357 GRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANL 436 (1008)
T ss_pred ccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhh
Confidence 8888787777663222 12211111111 1110000 0112111111
Q ss_pred ---------------HHHhH-hCCCeEEEEeCChHHHHHHHHHHHhC---------------------------------
Q 012013 306 ---------------LLEDI-MDGSRILIFMDTKKGCDQITRQLRMD--------------------------------- 336 (473)
Q Consensus 306 ---------------~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~--------------------------------- 336 (473)
+..+. .++.++||||+++..|+.++..+...
T Consensus 437 ~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~V 516 (1008)
T KOG0950|consen 437 YSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPV 516 (1008)
T ss_pred hhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchH
Confidence 11122 23446999999999999888665320
Q ss_pred -----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCC----CCCHHHHHHhhccccCC
Q 012013 337 -----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF----PGSLEDYVHRIGRTGRA 407 (473)
Q Consensus 337 -----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~----p~s~~~~~Qr~GR~gR~ 407 (473)
.+.+..+|.+++.++|+.+...|+.|...|++||++++.|+|+|..+++|-+-+ ..+..+|.||+|||||+
T Consensus 517 l~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~ 596 (1008)
T KOG0950|consen 517 LAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRT 596 (1008)
T ss_pred HheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhc
Confidence 244668999999999999999999999999999999999999999988885432 34678999999999999
Q ss_pred CCC--cEEEEEeccccHHHHHHHHH
Q 012013 408 GAK--GTAYTFFTAANARFAKELIT 430 (473)
Q Consensus 408 g~~--g~~~~~~~~~~~~~~~~l~~ 430 (473)
|-+ |.+++.+.+.+.+...+++.
T Consensus 597 gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 597 GIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred ccccCcceEEEeeccchhHHHHHHh
Confidence 865 99999999998876665443
No 103
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.2e-23 Score=218.38 Aligned_cols=284 Identities=21% Similarity=0.294 Sum_probs=193.4
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh-ccCCCce
Q 012013 124 PIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF-GASSKIK 202 (473)
Q Consensus 124 ~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~-~~~~~~~ 202 (473)
....+.+.++.+++.+++++|||||||+. +|.+.. ... .+.+.++.++-|+|.-|..+++.+.+. +...+-.
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~ll--e~g---~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFLL--EEG---LGIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHHH--hhh---cccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 34556777788889999999999999984 443322 111 123567889999997777777777653 3333322
Q ss_pred EEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh-hhC----CCHHHHHHHHh---hh
Q 012013 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM-LDM----GFEPQIKKILS---QV 274 (473)
Q Consensus 203 ~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l-~~~----~~~~~~~~i~~---~~ 274 (473)
|....-. .........|-++|.+.|++.+..+.. |+.+++|||||+|.- ++. ++...+..... ++
T Consensus 126 VGY~iRf------e~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 126 VGYSIRF------ESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eeEEEEe------eccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 2211111 111234568999999999999988765 899999999999952 221 11111111111 12
Q ss_pred hcCCCCcccc--------------c----cceeeE-EecCchh-hHHHHHHHHHhHhC--CCeEEEEeCChHHHHHHHHH
Q 012013 275 IIGSPDLKAN--------------H----AIRQHV-DIVSESQ-KYNKLVKLLEDIMD--GSRILIFMDTKKGCDQITRQ 332 (473)
Q Consensus 275 ~~~~~~~~~~--------------~----~i~~~~-~~~~~~~-k~~~l~~~l~~~~~--~~~~lVf~~~~~~~~~l~~~ 332 (473)
++.++++... . .+...+ ....... -...+...+..+.. .+.+|||.+...+.+.+++.
T Consensus 199 IimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~ 278 (845)
T COG1643 199 IIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEW 278 (845)
T ss_pred EEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHH
Confidence 2333332111 0 011111 1111222 33444444544433 45899999999999999999
Q ss_pred HHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCC------------------
Q 012013 333 LRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF------------------ 390 (473)
Q Consensus 333 L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~------------------ 390 (473)
|.+ ....+..+||.++.+++..+++--..+..+|++||++++++|.||+|.+||+-+.
T Consensus 279 L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~ 358 (845)
T COG1643 279 LEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETE 358 (845)
T ss_pred HHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEE
Confidence 987 3467889999999999999988888888889999999999999999999996553
Q ss_pred CCCHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 391 PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 391 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
|-|-++..||.|||||. .+|.||-+|++++.
T Consensus 359 ~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~ 389 (845)
T COG1643 359 PISKASADQRAGRAGRT-GPGICYRLYSEEDF 389 (845)
T ss_pred EechhhhhhhccccccC-CCceEEEecCHHHH
Confidence 44778899999999999 79999999998543
No 104
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=1.3e-22 Score=211.65 Aligned_cols=138 Identities=22% Similarity=0.384 Sum_probs=117.1
Q ss_pred hhhHHHHHHHHHhHh-CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 012013 297 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 375 (473)
Q Consensus 297 ~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~ 375 (473)
..|...+.+.+.... .+.++||||+|++.++.|+..|...++++..+|+ .+.+|+..+..|..+...|+|||++++|
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 467788888776643 4569999999999999999999999999999997 5889999999999999999999999999
Q ss_pred CCCCC---CCC-----EEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHH----HHHHHHHHHhC
Q 012013 376 GLDVK---DVK-----YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFA----KELITILEEAG 436 (473)
Q Consensus 376 Gidi~---~v~-----~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~----~~l~~~l~~~~ 436 (473)
|+||+ .|. +||.++.|.|...|.|++||+||.|.+|.++.|++..|.-+- ..+.+++...+
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~ 731 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRLG 731 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHcC
Confidence 99999 453 458999999999999999999999999999999998765431 23445554443
No 105
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.90 E-value=6.1e-23 Score=203.60 Aligned_cols=282 Identities=23% Similarity=0.300 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh-ccCCCce
Q 012013 124 PIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF-GASSKIK 202 (473)
Q Consensus 124 ~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~-~~~~~~~ 202 (473)
.+-.+.+..+.+++.+|++++||||||+ .+|-+ +.+..... ..++.|..|+|.-|..+++++..- +-..+-.
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKST--QipQy--L~eaG~~~---~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~ 126 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKST--QIPQY--LAEAGFAS---SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEE 126 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHH--HHhccccc---CCcEEeecCchHHHHHHHHHHHHHhCCCcCce
Confidence 3445777788889999999999999998 44532 22211111 233888999998888887776643 2222222
Q ss_pred EEE--EEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh--hhCCCHHHHHHHHhh-----
Q 012013 203 STC--IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM--LDMGFEPQIKKILSQ----- 273 (473)
Q Consensus 203 ~~~--~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l--~~~~~~~~~~~i~~~----- 273 (473)
|.. -+... ......|.+.|.+.|++.+..+.. |+++++||+||||.- ...-..--+++++..
T Consensus 127 VGY~IRFed~--------ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 127 VGYTIRFEDS--------TSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred eeeEEEeccc--------CCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCce
Confidence 211 11111 123468999999999998777654 899999999999952 111112223333322
Q ss_pred hhcCCCCccccc------------------cceeeEEecCchhhHHHHHHHHHhH---hCCCeEEEEeCChHHHHHHHHH
Q 012013 274 VIIGSPDLKANH------------------AIRQHVDIVSESQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQ 332 (473)
Q Consensus 274 ~~~~~~~~~~~~------------------~i~~~~~~~~~~~k~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~ 332 (473)
+++.++++.+.. .+...+......+-....+..+.++ .+.+-+|||....++++.+++.
T Consensus 198 lIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~ 277 (674)
T KOG0922|consen 198 LIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACEL 277 (674)
T ss_pred EEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHH
Confidence 333333322210 1111111112222333322222222 3445799999999999999999
Q ss_pred HHhC----C--C--CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCC--------------
Q 012013 333 LRMD----G--W--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF-------------- 390 (473)
Q Consensus 333 L~~~----~--~--~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~-------------- 390 (473)
|.+. . . .+..+||.++.+++..+++.-..|..+|++||++++..|.||.+.+||+-+.
T Consensus 278 l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~ 357 (674)
T KOG0922|consen 278 LRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDS 357 (674)
T ss_pred HHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccc
Confidence 9653 1 1 2468999999999999999988999999999999999999999999995553
Q ss_pred ----CCCHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 391 ----PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 391 ----p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
|-|.++-.||.|||||. .+|+||-+|++++.
T Consensus 358 L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 358 LIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred eeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 55888999999999999 68999999998754
No 106
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.90 E-value=2.3e-22 Score=209.96 Aligned_cols=288 Identities=21% Similarity=0.252 Sum_probs=198.3
Q ss_pred CCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc-cCCC
Q 012013 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG-ASSK 200 (473)
Q Consensus 122 ~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~-~~~~ 200 (473)
.+..+.+.+.++.+++.+++++.||||||+..-..+++...... ..+++++..|+|.-|..+++++..-. ...+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 46678888899999999999999999999976666677665532 46779999999999999998887643 2233
Q ss_pred ceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhh-hCCC-HHHHHHHHhh-----
Q 012013 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGF-EPQIKKILSQ----- 273 (473)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~-~~~~-~~~~~~i~~~----- 273 (473)
-.|..- ...+.. ......+++||.+.|++.+..+. .+..+++||+||+|.-. +..| .-.++.++..
T Consensus 249 ~~VGYq-----vrl~~~-~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 249 EEVGYQ-----VRLESK-RSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLK 321 (924)
T ss_pred CeeeEE-----Eeeecc-cCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCce
Confidence 222111 111111 12336899999999999998844 58899999999999421 1111 1111111111
Q ss_pred -------------------------------------------hhcCCCCccccccceee------EEecCchhhHHHHH
Q 012013 274 -------------------------------------------VIIGSPDLKANHAIRQH------VDIVSESQKYNKLV 304 (473)
Q Consensus 274 -------------------------------------------~~~~~~~~~~~~~i~~~------~~~~~~~~k~~~l~ 304 (473)
+................ +.....+.....+.
T Consensus 322 vILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~ 401 (924)
T KOG0920|consen 322 VILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIE 401 (924)
T ss_pred EEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHH
Confidence 10000000000000000 11112223344444
Q ss_pred HHHHhHh---CCCeEEEEeCChHHHHHHHHHHHhC-------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 012013 305 KLLEDIM---DGSRILIFMDTKKGCDQITRQLRMD-------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 374 (473)
Q Consensus 305 ~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~ 374 (473)
+++..+. ..+.+|||.+...++..+.+.|... .+.+..+|+.++..+++.++.....|..+|++||++++
T Consensus 402 ~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAE 481 (924)
T KOG0920|consen 402 DLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAE 481 (924)
T ss_pred HHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHh
Confidence 4444433 3568999999999999999999642 35577899999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEc--------CCC----------CCHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 375 RGLDVKDVKYVINY--------DFP----------GSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 375 ~Gidi~~v~~Vi~~--------~~p----------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
.+|.|++|.+||+. |+- -|-+.-.||.|||||. ++|.||.+|+....
T Consensus 482 TSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 482 TSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred hcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 99999999999944 432 2456677999999999 99999999997643
No 107
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.90 E-value=1.1e-22 Score=179.45 Aligned_cols=146 Identities=32% Similarity=0.552 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCce
Q 012013 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202 (473)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~ 202 (473)
||+|.++++.+.+++++++.+|||+|||++++++++..+... +..++|+++|+++|+.|..+.+.++....+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 689999999999999999999999999999999999888763 13589999999999999999999998887888
Q ss_pred EEEEEcCccCc-cchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhh
Q 012013 203 STCIYGGVPKG-PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274 (473)
Q Consensus 203 ~~~~~gg~~~~-~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~ 274 (473)
+..++++.... .....+..+++|+|+||++|.+++.....++.++++||+||+|.+.+..+...+..+...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~ 147 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRL 147 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHS
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHh
Confidence 99998887654 3333445579999999999999998865577789999999999999988888787777653
No 108
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.90 E-value=3.9e-23 Score=215.42 Aligned_cols=300 Identities=19% Similarity=0.273 Sum_probs=201.9
Q ss_pred CCCCHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 120 FEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.+++.||.+.+++++ .++++|++..+|.|||+. .+..|..+.... .-.|| .|||+|...+ ..|..++..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~---~~~gp-flvvvplst~-~~W~~ef~~w 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL---QIHGP-FLVVVPLSTI-TAWEREFETW 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh---hccCC-eEEEeehhhh-HHHHHHHHHH
Confidence 589999999999876 478999999999999976 333444443321 11144 6888898655 4689999998
Q ss_pred ccCCCceEEEEEcCccCccchHHhh----c-----CCcEEEeChHHHHHHHHccCcccc--ceeEEeecchhhhhhCC--
Q 012013 196 GASSKIKSTCIYGGVPKGPQVRDLQ----K-----GVEIVIATPGRLIDMLESHNTNLR--RVTYLVLDEADRMLDMG-- 262 (473)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~----~-----~~~Iiv~Tp~~l~~~l~~~~~~l~--~~~~vVvDEah~l~~~~-- 262 (473)
. .+++++.+|.......++... . ..+++++|++.++.- ...|+ ...+++|||||+|-+..
T Consensus 443 ~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD----k~~L~~i~w~~~~vDeahrLkN~~~~ 515 (1373)
T KOG0384|consen 443 T---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD----KAELSKIPWRYLLVDEAHRLKNDESK 515 (1373)
T ss_pred h---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc----HhhhccCCcceeeecHHhhcCchHHH
Confidence 7 477888888776655544321 1 368999998887642 22233 35689999999864211
Q ss_pred --------------------CHHHHHHHHhhhh----------------------------------------cCCCCcc
Q 012013 263 --------------------FEPQIKKILSQVI----------------------------------------IGSPDLK 282 (473)
Q Consensus 263 --------------------~~~~~~~i~~~~~----------------------------------------~~~~~~~ 282 (473)
..+.++.+.+.+. ....+-.
T Consensus 516 l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 516 LYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred HHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 1111111111100 0000000
Q ss_pred ccccceeeEE----------------------------------------------------------------------
Q 012013 283 ANHAIRQHVD---------------------------------------------------------------------- 292 (473)
Q Consensus 283 ~~~~i~~~~~---------------------------------------------------------------------- 292 (473)
......+.+.
T Consensus 596 lp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L 675 (1373)
T KOG0384|consen 596 LPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEAL 675 (1373)
T ss_pred CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHH
Confidence 0000000000
Q ss_pred --ecCchhhHHHHHHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcC---CCcE
Q 012013 293 --IVSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG---KSPI 366 (473)
Q Consensus 293 --~~~~~~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g---~~~i 366 (473)
.+..+.|+-.|-++|..+.. +++||||.+-+...+.|+++|...+|+...|.|.+..+.|+..++.|.+. ...+
T Consensus 676 ~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvF 755 (1373)
T KOG0384|consen 676 QALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVF 755 (1373)
T ss_pred HHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEE
Confidence 00011122223344545444 46999999999999999999999999999999999999999999999854 5668
Q ss_pred EEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHH
Q 012013 367 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 432 (473)
Q Consensus 367 LvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 432 (473)
|+||.+.+-|||+..+++||+||..|||..=+|...||+|.||+..+-+|-.-....+-.++++-.
T Consensus 756 LLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA 821 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA 821 (1373)
T ss_pred EEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999986554443333333444444443
No 109
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1e-21 Score=197.06 Aligned_cols=288 Identities=21% Similarity=0.248 Sum_probs=200.9
Q ss_pred CCCHHHHHHHHHHhc----CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 121 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
.+.|||++++.++.. +...|+...+|.|||.. ++..|..+..... ....+|||||. .+..||..++..|.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k----~~~paLIVCP~-Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGK----LTKPALIVCPA-TIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhccc----ccCceEEEccH-HHHHHHHHHHHHhC
Confidence 468999999998763 56789999999999987 3344444444311 12569999997 57789999999998
Q ss_pred cCCCceEEEEEcCccCccc-------------hHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCC-
Q 012013 197 ASSKIKSTCIYGGVPKGPQ-------------VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG- 262 (473)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~-------------~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~- 262 (473)
+. +++..+++......+ .+.......|+|+|++.+.-. .+...-...+++|+||.|++-+..
T Consensus 279 p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpns 354 (923)
T KOG0387|consen 279 PP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPNS 354 (923)
T ss_pred cc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCcc
Confidence 66 677777765542110 111123457999998764322 112222346899999999754322
Q ss_pred ---------------------CHHHHHHHHhh------------------------------------------------
Q 012013 263 ---------------------FEPQIKKILSQ------------------------------------------------ 273 (473)
Q Consensus 263 ---------------------~~~~~~~i~~~------------------------------------------------ 273 (473)
+.+.+..+...
T Consensus 355 ~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~ 434 (923)
T KOG0387|consen 355 KISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRD 434 (923)
T ss_pred HHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHH
Confidence 11111111100
Q ss_pred --------------------------------------------------hhcCCC----------------Cccccc--
Q 012013 274 --------------------------------------------------VIIGSP----------------DLKANH-- 285 (473)
Q Consensus 274 --------------------------------------------------~~~~~~----------------~~~~~~-- 285 (473)
+.-+.. .+....
T Consensus 435 lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~ 514 (923)
T KOG0387|consen 435 LISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDE 514 (923)
T ss_pred HhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccc
Confidence 000000 000000
Q ss_pred cceeeE---EecCchhhHHHHHHHHHhHhC-CCeEEEEeCChHHHHHHHHHHH-hCCCCeEEecCCCCHHHHHHHHHHHh
Q 012013 286 AIRQHV---DIVSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLR-MDGWPALSIHGDKSQAERDWVLSEFK 360 (473)
Q Consensus 286 ~i~~~~---~~~~~~~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~ihg~~~~~~r~~~~~~f~ 360 (473)
...+.- -......|...+..++..... +.++|+|.+++...+.|...|. ..++.++.+.|..+...|..++++|+
T Consensus 515 ~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fn 594 (923)
T KOG0387|consen 515 DEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFN 594 (923)
T ss_pred ccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhc
Confidence 000000 112234578888888887665 5599999999999999999998 68999999999999999999999999
Q ss_pred cCCC-c-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEec
Q 012013 361 AGKS-P-IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 418 (473)
Q Consensus 361 ~g~~-~-iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 418 (473)
++.. . +|++|.+.+-|+|+..++-||.||+.|||+.-.|..-||-|.||+..+++|-.
T Consensus 595 e~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL 654 (923)
T KOG0387|consen 595 EDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRL 654 (923)
T ss_pred CCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEE
Confidence 8754 3 57888999999999999999999999999999999999999999876666544
No 110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.2e-20 Score=194.35 Aligned_cols=265 Identities=25% Similarity=0.426 Sum_probs=182.0
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHH
Q 012013 110 VMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (473)
Q Consensus 110 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~ 189 (473)
+.+.+.+.-..+|+..|+--...+..|+++-++||||.|||+--++..+..... +.++++|+||..|+.|+.
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k--------gkr~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK--------GKRVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc--------CCeEEEEecCHHHHHHHH
Confidence 444555555559999999999999999999999999999997433333322222 789999999999999999
Q ss_pred HHHHHhccCCC-ceEEEEEcCc-cCccc---hHHhh-cCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCC-
Q 012013 190 QESTKFGASSK-IKSTCIYGGV-PKGPQ---VRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG- 262 (473)
Q Consensus 190 ~~~~~~~~~~~-~~~~~~~gg~-~~~~~---~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~- 262 (473)
+.+++|....+ ..+..+|.+. +.... ...+. .+.+|+|+|.+-|...+..-.. .+|++|++|++|.++-.+
T Consensus 143 ~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~--~kFdfifVDDVDA~Lkask 220 (1187)
T COG1110 143 ERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK--LKFDFIFVDDVDAILKASK 220 (1187)
T ss_pred HHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc--cCCCEEEEccHHHHHhccc
Confidence 99999975554 4444433333 33222 22233 3689999997766655443211 369999999999765322
Q ss_pred ----------CHHH-------HHHHHhh------------------------------hhcCCCCccccc----------
Q 012013 263 ----------FEPQ-------IKKILSQ------------------------------VIIGSPDLKANH---------- 285 (473)
Q Consensus 263 ----------~~~~-------~~~i~~~------------------------------~~~~~~~~~~~~---------- 285 (473)
|... +..+..+ +.+.+++.....
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh
Confidence 2221 0111000 222232221111
Q ss_pred ---------cceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCC---hHHHHHHHHHHHhCCCCeEEecCCCCHHHHH
Q 012013 286 ---------AIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDT---KKGCDQITRQLRMDGWPALSIHGDKSQAERD 353 (473)
Q Consensus 286 ---------~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~---~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~ 353 (473)
.+...++......-...+.++++..-. -.|||++. ++.+++++++|+..|+++..+|+. ..
T Consensus 301 gFevG~~~~~LRNIvD~y~~~~~~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~ 373 (1187)
T COG1110 301 GFEVGSGGEGLRNIVDIYVESESLEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KE 373 (1187)
T ss_pred CCccCccchhhhheeeeeccCccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----ch
Confidence 122223333333556667777777655 37999999 999999999999999999999974 26
Q ss_pred HHHHHHhcCCCcEEEEe----cccccCCCCCC-CCEEEEcCCC
Q 012013 354 WVLSEFKAGKSPIMTAT----DVAARGLDVKD-VKYVINYDFP 391 (473)
Q Consensus 354 ~~~~~f~~g~~~iLvaT----~~~~~Gidi~~-v~~Vi~~~~p 391 (473)
..++.|..|+++|||.+ .++-||||+|. ++++|+++.|
T Consensus 374 ~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 374 EALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 68999999999999876 57899999996 7889988876
No 111
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=8.7e-21 Score=197.90 Aligned_cols=133 Identities=20% Similarity=0.336 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHhHh-CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccC
Q 012013 298 QKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 376 (473)
Q Consensus 298 ~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~G 376 (473)
.++..|++.+.... .+.++||||++++.++.+++.|.+.++++..+|+++++.+|.++++.|+.|++.|||||+++++|
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 34556666665543 45699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcC-----CCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHH
Q 012013 377 LDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 431 (473)
Q Consensus 377 idi~~v~~Vi~~~-----~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 431 (473)
+|+|++++||++| .|.+..+|+||+||+||. ..|.+++|++..+..+...+.+.
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 9999999999998 789999999999999998 68999999998776665555554
No 112
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=2e-22 Score=198.10 Aligned_cols=287 Identities=21% Similarity=0.298 Sum_probs=193.4
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh-cc
Q 012013 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF-GA 197 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~-~~ 197 (473)
....+++-.+.+.++..++.++|.+.||||||+ .+|-+.+ .... ...+.++-|..|+|.-|..++.++.+- +.
T Consensus 263 sLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~--EaGy--tk~gk~IgcTQPRRVAAmSVAaRVA~EMgv 336 (902)
T KOG0923|consen 263 SLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLY--EAGY--TKGGKKIGCTQPRRVAAMSVAARVAEEMGV 336 (902)
T ss_pred cCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHH--hccc--ccCCceEeecCcchHHHHHHHHHHHHHhCc
Confidence 345577788899999999999999999999998 5664333 2211 112455888889999999888776652 22
Q ss_pred CCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh-hh-----------CCCHH
Q 012013 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM-LD-----------MGFEP 265 (473)
Q Consensus 198 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l-~~-----------~~~~~ 265 (473)
.++-.| |-....+.. .....-|-++|.+.|++-+... ..|.++++|||||||.- +. +-|++
T Consensus 337 kLG~eV----GYsIRFEdc--TSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp 409 (902)
T KOG0923|consen 337 KLGHEV----GYSIRFEDC--TSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP 409 (902)
T ss_pred cccccc----ceEEEeccc--cCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC
Confidence 221111 111111111 1234578899999999877654 45899999999999952 11 12444
Q ss_pred HHHHHHhhhhcCCCCcccc---------c----cceeeEEecCchhhHHHHHHHHHhHh---CCCeEEEEeCChHHHHHH
Q 012013 266 QIKKILSQVIIGSPDLKAN---------H----AIRQHVDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQI 329 (473)
Q Consensus 266 ~~~~i~~~~~~~~~~~~~~---------~----~i~~~~~~~~~~~k~~~l~~~l~~~~---~~~~~lVf~~~~~~~~~l 329 (473)
.++-+++..+++...+... . .+...+....+.+-+++.+.-+.++. +.+-||||....++.+..
T Consensus 410 dLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~ 489 (902)
T KOG0923|consen 410 DLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETV 489 (902)
T ss_pred cceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHH
Confidence 4444443322222111111 1 11122222334444444443333322 245799999999988887
Q ss_pred HHHHHh----C-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCC----------
Q 012013 330 TRQLRM----D-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF---------- 390 (473)
Q Consensus 330 ~~~L~~----~-----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~---------- 390 (473)
.+.|.. . .+-+..||+.++.+.+.++++--..|-.+|++||++++..|.|++|.+||.-++
T Consensus 490 ~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprt 569 (902)
T KOG0923|consen 490 KENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRT 569 (902)
T ss_pred HHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCc
Confidence 777743 2 234678999999999999999999999999999999999999999999995543
Q ss_pred --------CCCHHHHHHhhccccCCCCCcEEEEEecc
Q 012013 391 --------PGSLEDYVHRIGRTGRAGAKGTAYTFFTA 419 (473)
Q Consensus 391 --------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 419 (473)
|-|-++-.||+|||||. .+|+|+-+|+.
T Consensus 570 GmesL~v~piSKAsA~QRaGRAGRt-gPGKCfRLYt~ 605 (902)
T KOG0923|consen 570 GMESLLVTPISKASANQRAGRAGRT-GPGKCFRLYTA 605 (902)
T ss_pred CceeEEEeeechhhhhhhccccCCC-CCCceEEeech
Confidence 44678889999999999 58999999994
No 113
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.7e-20 Score=190.87 Aligned_cols=288 Identities=20% Similarity=0.222 Sum_probs=203.4
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 199 (473)
..|++.|.-+.-.+++| -|+.+.||.|||+++.+|++..++. +..|.|++|+.-||.|-++++..+...+
T Consensus 77 ~r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 77 LRPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 36788888888777765 4778999999999999999888776 7779999999999999999999999999
Q ss_pred CceEEEEEcCccCccchHHhhcCCcEEEeChHHHH-HHHHc------cCccccceeEEeecchhhhhhCC----------
Q 012013 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLES------HNTNLRRVTYLVLDEADRMLDMG---------- 262 (473)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~------~~~~l~~~~~vVvDEah~l~~~~---------- 262 (473)
++.+.++.+..+... +...-.|+|+++|...|- ++|.. .....+.+.+.||||+|.++-..
T Consensus 147 GLsvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 147 GLTVGWITEESTPEE--RRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred CCEEEEECCCCCHHH--HHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 999999988765432 222336899999986653 22221 12234668999999999653100
Q ss_pred -----CHHH---------------------------------------------------HHHHHhh-------------
Q 012013 263 -----FEPQ---------------------------------------------------IKKILSQ------------- 273 (473)
Q Consensus 263 -----~~~~---------------------------------------------------~~~i~~~------------- 273 (473)
.... +..+...
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 0000 0000000
Q ss_pred ------------------------------------hhcCC---------------------------------------
Q 012013 274 ------------------------------------VIIGS--------------------------------------- 278 (473)
Q Consensus 274 ------------------------------------~~~~~--------------------------------------- 278 (473)
+.+..
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~ 384 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 384 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhC
Confidence 00000
Q ss_pred ---CCcccccc----ceeeEEecCchhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHH
Q 012013 279 ---PDLKANHA----IRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQA 350 (473)
Q Consensus 279 ---~~~~~~~~----i~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~ 350 (473)
...+.+.. ............|+.++++-+.+. ..+.||||.|.+++..+.++..|.+.+++..+++..-...
T Consensus 385 l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~ 464 (764)
T PRK12326 385 LGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAE 464 (764)
T ss_pred CcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHh
Confidence 00000000 001112234456777777666554 5567999999999999999999999999999999875443
Q ss_pred HHHHHHHHHhcCC-CcEEEEecccccCCCCCCC---------------CEEEEcCCCCCHHHHHHhhccccCCCCCcEEE
Q 012013 351 ERDWVLSEFKAGK-SPIMTATDVAARGLDVKDV---------------KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY 414 (473)
Q Consensus 351 ~r~~~~~~f~~g~-~~iLvaT~~~~~Gidi~~v---------------~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 414 (473)
+- +++. ..|+ -.|.|||++++||.||.-- -+||-...+.|...-.|-.||+||.|.+|.+.
T Consensus 465 EA-~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~ 541 (764)
T PRK12326 465 EA-RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSV 541 (764)
T ss_pred HH-HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCcee
Confidence 32 2222 2343 3599999999999999722 37898889999999999999999999999999
Q ss_pred EEeccccH
Q 012013 415 TFFTAANA 422 (473)
Q Consensus 415 ~~~~~~~~ 422 (473)
.|++-.|.
T Consensus 542 f~lSleDd 549 (764)
T PRK12326 542 FFVSLEDD 549 (764)
T ss_pred EEEEcchh
Confidence 99887664
No 114
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.87 E-value=1.9e-20 Score=190.25 Aligned_cols=270 Identities=20% Similarity=0.215 Sum_probs=176.0
Q ss_pred CCCHHHHHHHHHHh----cC-CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 121 EPTPIQAQGWPMAL----KG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~----~~-~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.|+.+|..||..+. +| +.++++++||+|||.+++ .++..+... +..++||+|+.+++|..|....+..|
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhc-----chhheeeEEechHHHHHHHHHHHHHh
Confidence 58999999997755 34 458999999999998844 555665543 23788999999999999999999998
Q ss_pred ccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc-----CccccceeEEeecchhhhhhCCCHHHHHHH
Q 012013 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----NTNLRRVTYLVLDEADRMLDMGFEPQIKKI 270 (473)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-----~~~l~~~~~vVvDEah~l~~~~~~~~~~~i 270 (473)
.+... ......+... ...+.|.|+|++++....... .+....|++||+||||+-.-..+...+..+
T Consensus 239 ~P~~~--~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~dYF 309 (875)
T COG4096 239 LPFGT--KMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILDYF 309 (875)
T ss_pred CCCcc--ceeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHHHHH
Confidence 76532 2222222111 125799999999998877654 233456999999999985543333333332
Q ss_pred HhhhhcCCCCccc-------------------------------cccce------------------------------e
Q 012013 271 LSQVIIGSPDLKA-------------------------------NHAIR------------------------------Q 289 (473)
Q Consensus 271 ~~~~~~~~~~~~~-------------------------------~~~i~------------------------------~ 289 (473)
-+......+++.. ...+. +
T Consensus 310 dA~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~ 389 (875)
T COG4096 310 DAATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQ 389 (875)
T ss_pred HHHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccc
Confidence 2211111110000 00000 0
Q ss_pred eEEecC------chhhHHHHHHHHHhHhC-------CCeEEEEeCChHHHHHHHHHHHhC-----CCCeEEecCCCCHHH
Q 012013 290 HVDIVS------ESQKYNKLVKLLEDIMD-------GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAE 351 (473)
Q Consensus 290 ~~~~~~------~~~k~~~l~~~l~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~ 351 (473)
.+...+ -......+...+.+.+. -+|+||||.+..+|+.+...|... +--+..|.++-.+ .
T Consensus 390 ~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~-~ 468 (875)
T COG4096 390 NFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ-A 468 (875)
T ss_pred cccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh-h
Confidence 000000 00112233344443332 238999999999999999999754 2235667776543 3
Q ss_pred HHHHHHHHhc-CC-CcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCC
Q 012013 352 RDWVLSEFKA-GK-SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 407 (473)
Q Consensus 352 r~~~~~~f~~-g~-~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 407 (473)
+. .++.|.. .. ..|.|+.+++.+|||+|.|..+|++..-.|...|.||+||.-|.
T Consensus 469 q~-~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 469 QA-LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred HH-HHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 33 4445543 33 45777779999999999999999999999999999999999993
No 115
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.87 E-value=9.3e-21 Score=201.90 Aligned_cols=295 Identities=18% Similarity=0.265 Sum_probs=191.6
Q ss_pred CCHHHHHHHHHHhcC---C-cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 012013 122 PTPIQAQGWPMALKG---R-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (473)
Q Consensus 122 ~~~~Q~~~i~~i~~~---~-~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~ 197 (473)
+++.|..++..+... . .+++.||||+|||++++.+++..+... .....+++++.|++.+.+++++.+.++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 488999999888753 3 678899999999999998888776652 12478899999999999999999998654
Q ss_pred CCCceEEEEEcCccCccchHHh---------------hcCCcEEEeChHHHHHHHHcc-Ccc-c--cceeEEeecchhhh
Q 012013 198 SSKIKSTCIYGGVPKGPQVRDL---------------QKGVEIVIATPGRLIDMLESH-NTN-L--RRVTYLVLDEADRM 258 (473)
Q Consensus 198 ~~~~~~~~~~gg~~~~~~~~~~---------------~~~~~Iiv~Tp~~l~~~l~~~-~~~-l--~~~~~vVvDEah~l 258 (473)
.........++.... ...... ..-..+.++||.......... ... + -..+.+||||+|.+
T Consensus 272 ~~~~~~~~~h~~~~~-~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 272 LFSVIGKSLHSSSKE-PLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred ccccccccccccccc-hhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 433222212222211 000000 001345555554444322211 111 1 12478999999998
Q ss_pred hhCCCHHHHHHHHhh-------hhcCCCCccccc------------cceee-----------EEec--CchhhH---HHH
Q 012013 259 LDMGFEPQIKKILSQ-------VIIGSPDLKANH------------AIRQH-----------VDIV--SESQKY---NKL 303 (473)
Q Consensus 259 ~~~~~~~~~~~i~~~-------~~~~~~~~~~~~------------~i~~~-----------~~~~--~~~~k~---~~l 303 (473)
.+......+..++.. +.+.+++++... .+... +... ...... ...
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 430 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELI 430 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhh
Confidence 776423333333222 333344332210 00000 0000 000011 123
Q ss_pred HHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHH----hcCCCcEEEEecccccCCCC
Q 012013 304 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF----KAGKSPIMTATDVAARGLDV 379 (473)
Q Consensus 304 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f----~~g~~~iLvaT~~~~~Gidi 379 (473)
.........+.+++|.|||+..|..+++.|+..+.++..+|+.+...+|.+.++.+ +.+...|+|||++++.|+|+
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 33344455677999999999999999999998877899999999999999887754 45678899999999999999
Q ss_pred CCCCEEEEcCCCCCHHHHHHhhccccCCC--CCcEEEEEeccccHHH
Q 012013 380 KDVKYVINYDFPGSLEDYVHRIGRTGRAG--AKGTAYTFFTAANARF 424 (473)
Q Consensus 380 ~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~ 424 (473)
. .+++|-==.| +++.+||+||++|.| ..|..+++........
T Consensus 511 d-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~ 554 (733)
T COG1203 511 D-FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGPY 554 (733)
T ss_pred c-cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCCc
Confidence 4 7777754445 899999999999999 5678877776654433
No 116
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=4.9e-21 Score=195.35 Aligned_cols=132 Identities=21% Similarity=0.313 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc-cCC
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG-ASS 199 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~-~~~ 199 (473)
.|..||.+.+..+-.+.+++++|||.+|||++-.. ++...+.. .+...||+++||++|++|+...+..-. ...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY-~iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFY-AIEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHH-HHHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 58899999999999999999999999999987444 34444432 246789999999999999987766433 222
Q ss_pred CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHc---cCccccceeEEeecchhhhhh
Q 012013 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES---HNTNLRRVTYLVLDEADRMLD 260 (473)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~---~~~~l~~~~~vVvDEah~l~~ 260 (473)
-.+.+.+.|......++. .-.|.|+|+-|+.+-.+|.. ......++.++|+||+|.+..
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~ 646 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGN 646 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccc
Confidence 233334444433322222 23689999999999988876 344578899999999997653
No 117
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.87 E-value=5.8e-21 Score=191.43 Aligned_cols=290 Identities=22% Similarity=0.294 Sum_probs=202.4
Q ss_pred CCCHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
++.+||.-.++++. .+-+.|+..++|.|||.. .++.+.++.... ..+| -|||||...| ..|..++.+|+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g----~~gp-HLVVvPsSTl-eNWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG----NPGP-HLVVVPSSTL-ENWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC----CCCC-cEEEecchhH-HHHHHHHHHhC
Confidence 58899999998864 345789999999999977 455666665532 1244 5888998766 56999999999
Q ss_pred cCCCceEEEEEcCccCccchHHhh----cCCcEEEeChHHHHHHHH-ccCccccceeEEeecchhhhhhCC---------
Q 012013 197 ASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDEADRMLDMG--------- 262 (473)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~-~~~~~l~~~~~vVvDEah~l~~~~--------- 262 (473)
+. +++-..||....+.+++..- .+++|+++|+.....--. +..+.-.+++++|+||+|.+-++.
T Consensus 472 Ps--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~ 549 (941)
T KOG0389|consen 472 PS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMS 549 (941)
T ss_pred Cc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhcc
Confidence 77 67788888765544444321 268999999865542110 011112468899999999654322
Q ss_pred -------------CHHHHHHHHhh--------------------------------------------------------
Q 012013 263 -------------FEPQIKKILSQ-------------------------------------------------------- 273 (473)
Q Consensus 263 -------------~~~~~~~i~~~-------------------------------------------------------- 273 (473)
..+.+..+++.
T Consensus 550 I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K 629 (941)
T KOG0389|consen 550 INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLK 629 (941)
T ss_pred ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 01111111110
Q ss_pred ---------------------------------hh--cCC--CC--ccc-----------ccc-----------------
Q 012013 274 ---------------------------------VI--IGS--PD--LKA-----------NHA----------------- 286 (473)
Q Consensus 274 ---------------------------------~~--~~~--~~--~~~-----------~~~----------------- 286 (473)
.. ... .. ... ++.
T Consensus 630 ~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak 709 (941)
T KOG0389|consen 630 SQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAK 709 (941)
T ss_pred HHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHH
Confidence 00 000 00 000 000
Q ss_pred ---------------ceeeE-------------------------EecCchhhHHHHHHHHHhHhCC-CeEEEEeCChHH
Q 012013 287 ---------------IRQHV-------------------------DIVSESQKYNKLVKLLEDIMDG-SRILIFMDTKKG 325 (473)
Q Consensus 287 ---------------i~~~~-------------------------~~~~~~~k~~~l~~~l~~~~~~-~~~lVf~~~~~~ 325 (473)
|.+.+ ...-.+.|...|..+|.+.... .+||||.+....
T Consensus 710 ~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqm 789 (941)
T KOG0389|consen 710 RILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQM 789 (941)
T ss_pred HHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHH
Confidence 00000 0011345777788888777654 699999999999
Q ss_pred HHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCC-C-cEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhcc
Q 012013 326 CDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK-S-PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGR 403 (473)
Q Consensus 326 ~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~-~-~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR 403 (473)
.+.|...|.-.++....+.|...-.+|+.+++.|...+ + -+|++|.+.+-|||+.++++||.+|...||-+-.|.-.|
T Consensus 790 LDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDR 869 (941)
T KOG0389|consen 790 LDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDR 869 (941)
T ss_pred HHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHH
Confidence 99999999999999999999999999999999999764 3 358899999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEEecc
Q 012013 404 TGRAGAKGTAYTFFTA 419 (473)
Q Consensus 404 ~gR~g~~g~~~~~~~~ 419 (473)
|+|+||+..+.++-.-
T Consensus 870 cHRvGQtkpVtV~rLI 885 (941)
T KOG0389|consen 870 CHRVGQTKPVTVYRLI 885 (941)
T ss_pred HHhhCCcceeEEEEEE
Confidence 9999998655554433
No 118
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=6.6e-20 Score=191.02 Aligned_cols=288 Identities=20% Similarity=0.242 Sum_probs=199.9
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 200 (473)
.|+++|.-+ .+.-++.-|+.+.||+|||+++.+|++...+. +..|.|++|+.-||.|-++++..+...++
T Consensus 82 ~~ydVQliG--g~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~lG 151 (913)
T PRK13103 82 RHFDVQLIG--GMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFLG 151 (913)
T ss_pred CcchhHHHh--hhHhccCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 455555544 44445677889999999999999999887776 77799999999999999999999999999
Q ss_pred ceEEEEEcCccCccchHHhhcCCcEEEeChHHH-HHHHHcc------CccccceeEEeecchhhhh-hCC----------
Q 012013 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DMG---------- 262 (473)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~vVvDEah~l~-~~~---------- 262 (473)
+.+.++.+..+...... .-.++|+++|..-| .|.|..+ ....+.+.++||||+|.++ |..
T Consensus 152 l~v~~i~~~~~~~err~--~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~ 229 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRA--AYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQA 229 (913)
T ss_pred CEEEEECCCCCHHHHHH--HhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCC
Confidence 99999877665433222 23489999998776 2333322 1123778999999999653 000
Q ss_pred ------------CHH------------------------------------HHHHHH-----------------------
Q 012013 263 ------------FEP------------------------------------QIKKIL----------------------- 271 (473)
Q Consensus 263 ------------~~~------------------------------------~~~~i~----------------------- 271 (473)
+.. .++.++
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~ 309 (913)
T PRK13103 230 EDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTH 309 (913)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHH
Confidence 000 000100
Q ss_pred -----hh----------------------------------------------hhcCC----------------------
Q 012013 272 -----SQ----------------------------------------------VIIGS---------------------- 278 (473)
Q Consensus 272 -----~~----------------------------------------------~~~~~---------------------- 278 (473)
.. +.+..
T Consensus 310 i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsG 389 (913)
T PRK13103 310 VYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSG 389 (913)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhcc
Confidence 00 00000
Q ss_pred --------------------CCccccc----cceeeEEecCchhhHHHHHHHHHhHh-CCCeEEEEeCChHHHHHHHHHH
Q 012013 279 --------------------PDLKANH----AIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQL 333 (473)
Q Consensus 279 --------------------~~~~~~~----~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L 333 (473)
...+.+. .-...........|+.++++-+.... .+.||||-+.+++..+.|+..|
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L 469 (913)
T PRK13103 390 MTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLL 469 (913)
T ss_pred CCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHH
Confidence 0000000 00011123344577888777666554 4669999999999999999999
Q ss_pred HhCCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEecccccCCCCC--------------------------------
Q 012013 334 RMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPIMTATDVAARGLDVK-------------------------------- 380 (473)
Q Consensus 334 ~~~~~~~~~ihg~~~~~~r~~~~~~f~~g-~~~iLvaT~~~~~Gidi~-------------------------------- 380 (473)
...+++..+++......+-+.+- ..| .-.|.|||++++||.||.
T Consensus 470 ~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e 546 (913)
T PRK13103 470 KKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQ 546 (913)
T ss_pred HHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHH
Confidence 99999988888875443333332 345 345999999999999995
Q ss_pred -----CCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHH
Q 012013 381 -----DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 423 (473)
Q Consensus 381 -----~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 423 (473)
.=-+||-...+.|..--.|-.||+||.|.+|.+..|++-.|.-
T Consensus 547 ~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 547 QVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred HHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 1236888888889888999999999999999999999887653
No 119
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.86 E-value=7.9e-20 Score=188.01 Aligned_cols=295 Identities=22% Similarity=0.239 Sum_probs=193.8
Q ss_pred CCCHHHHHHHHHHhc---C-------CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q 012013 121 EPTPIQAQGWPMALK---G-------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~---~-------~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 190 (473)
.++|+|++++..+.. + ..+|++..+|+|||+. +++.++.++.+-+.....-.+.|||+|. .|+..|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 579999999988763 2 2478889999999998 5555665555422111233779999996 79999999
Q ss_pred HHHHhccCCCceEEEEEcCccC-ccc---hH---HhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCC-
Q 012013 191 ESTKFGASSKIKSTCIYGGVPK-GPQ---VR---DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG- 262 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~gg~~~-~~~---~~---~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~- 262 (473)
+|.+|.....+....+++.... ... +. ......-|++.+++.+.+.+.. ..+..+++||+||.|++-+..
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~~s 393 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNSDS 393 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccchhh
Confidence 9999986666777777776653 000 00 0011346889999998766554 335578999999999632110
Q ss_pred ---------------------CHHHH---------------------------------------------------HHH
Q 012013 263 ---------------------FEPQI---------------------------------------------------KKI 270 (473)
Q Consensus 263 ---------------------~~~~~---------------------------------------------------~~i 270 (473)
|.+.+ +.+
T Consensus 394 ~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~ 473 (776)
T KOG0390|consen 394 LTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELREL 473 (776)
T ss_pred HHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHH
Confidence 11111 111
Q ss_pred Hhhhhc-----------------------------------CC-----------------------CCccc------c--
Q 012013 271 LSQVII-----------------------------------GS-----------------------PDLKA------N-- 284 (473)
Q Consensus 271 ~~~~~~-----------------------------------~~-----------------------~~~~~------~-- 284 (473)
...+++ .+ +.+.. .
T Consensus 474 t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~ 553 (776)
T KOG0390|consen 474 TNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEK 553 (776)
T ss_pred HHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccccc
Confidence 111000 00 00000 0
Q ss_pred -----------ccceeeEEecCchhhHHHHHHHHHhHhCC--CeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHH
Q 012013 285 -----------HAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAE 351 (473)
Q Consensus 285 -----------~~i~~~~~~~~~~~k~~~l~~~l~~~~~~--~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~ 351 (473)
..............|+..|..++...... .++.+..+.+...+.+....+-.|+.+..+||.++..+
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~q 633 (776)
T KOG0390|consen 554 AFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQ 633 (776)
T ss_pred cccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHH
Confidence 00000000001123455555555333221 24555556666666666666667999999999999999
Q ss_pred HHHHHHHHhcCCC--c-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEecc
Q 012013 352 RDWVLSEFKAGKS--P-IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA 419 (473)
Q Consensus 352 r~~~~~~f~~g~~--~-iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 419 (473)
|+.+++.|++... . +|.+|.+.+.||++-.++.||.||++|||+.-.|++.|+-|.||...||+|-.-
T Consensus 634 Rq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLl 704 (776)
T KOG0390|consen 634 RQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLL 704 (776)
T ss_pred HHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEee
Confidence 9999999997543 3 466779999999999999999999999999999999999999999988887553
No 120
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.86 E-value=1.5e-19 Score=196.64 Aligned_cols=130 Identities=15% Similarity=0.263 Sum_probs=92.3
Q ss_pred HHHHHHHhHh--CCCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 012013 302 KLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 375 (473)
Q Consensus 302 ~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~ 375 (473)
.+.+.+.++. ..+++|||+++.+.++.++..|.. .++.+ +..+.. ..|..++++|++++..||++|+.+++
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~E 737 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWE 737 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeec
Confidence 3444443332 346899999999999999999975 23333 333332 47888999999999999999999999
Q ss_pred CCCCCCCC--EEEEcCCCCC------------------------------HHHHHHhhccccCCCCCcEEEEEeccc--c
Q 012013 376 GLDVKDVK--YVINYDFPGS------------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAA--N 421 (473)
Q Consensus 376 Gidi~~v~--~Vi~~~~p~s------------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~~~--~ 421 (473)
|||+|+.. .||...+|.. +..+.|.+||.-|..++.-++++++.. .
T Consensus 738 GVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~ 817 (850)
T TIGR01407 738 GVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVG 817 (850)
T ss_pred ccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcccccc
Confidence 99999866 4666665531 233559999999997665455555543 4
Q ss_pred HHHHHHHHHHHHH
Q 012013 422 ARFAKELITILEE 434 (473)
Q Consensus 422 ~~~~~~l~~~l~~ 434 (473)
.++-+.+.+.|..
T Consensus 818 ~~Yg~~~~~sLp~ 830 (850)
T TIGR01407 818 KRYGKRFEKSLPE 830 (850)
T ss_pred chHHHHHHHhCCC
Confidence 5566777777754
No 121
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.8e-20 Score=184.76 Aligned_cols=282 Identities=21% Similarity=0.300 Sum_probs=178.9
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh-ccCCCce
Q 012013 124 PIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF-GASSKIK 202 (473)
Q Consensus 124 ~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~-~~~~~~~ 202 (473)
..+.+.+..+..++.+|++++||||||+. +|- ++.... -.+...+-+..|.|.-|..++..+..- +..++-.
T Consensus 359 ~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~Q--yL~edG---Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 359 ACRDQLLSVIRENQVVVIVGETGSGKTTQ--LAQ--YLYEDG---YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred HHHHHHHHHHhhCcEEEEEecCCCCchhh--hHH--HHHhcc---cccCCeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 34556666667788899999999999985 332 333221 223446778889999998888877653 2222221
Q ss_pred EEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhh-hCC-CHHHHHHHHhh-----hh
Q 012013 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMG-FEPQIKKILSQ-----VI 275 (473)
Q Consensus 203 ~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~-~~~-~~~~~~~i~~~-----~~ 275 (473)
.|-....+... .....|-++|.+.|++-...+. .|.++++||+||||.-. +.. ..-.++.++.. ++
T Consensus 432 ----VGYsIRFEdvT--~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKli 504 (1042)
T KOG0924|consen 432 ----VGYSIRFEDVT--SEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLI 504 (1042)
T ss_pred ----cceEEEeeecC--CCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEE
Confidence 12111111111 2446799999999998655544 47889999999999532 110 11122222221 22
Q ss_pred cCCCCcccc--------------ccceeeEEe----cCchhhHHHHH-HHHHhHh--CCCeEEEEeCChHHHHHH----H
Q 012013 276 IGSPDLKAN--------------HAIRQHVDI----VSESQKYNKLV-KLLEDIM--DGSRILIFMDTKKGCDQI----T 330 (473)
Q Consensus 276 ~~~~~~~~~--------------~~i~~~~~~----~~~~~k~~~l~-~~l~~~~--~~~~~lVf~~~~~~~~~l----~ 330 (473)
+.+++..+. ....-.+.+ ..-++.....+ +.+.-+. ..+-+|||....+.++-. .
T Consensus 505 VtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~ 584 (1042)
T KOG0924|consen 505 VTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIK 584 (1042)
T ss_pred EeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHH
Confidence 222221111 001111111 11122222222 2221111 235799999988765544 4
Q ss_pred HHHHhC------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCC--------------
Q 012013 331 RQLRMD------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF-------------- 390 (473)
Q Consensus 331 ~~L~~~------~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~-------------- 390 (473)
+.|.+. ++.++.|++.++..-+.++++.-..|..+++|||++++..+.||++.+||..++
T Consensus 585 ~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~ 664 (1042)
T KOG0924|consen 585 EKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDA 664 (1042)
T ss_pred HHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccce
Confidence 444332 567899999999999999999888999999999999999999999999996654
Q ss_pred ----CCCHHHHHHhhccccCCCCCcEEEEEeccc
Q 012013 391 ----PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 420 (473)
Q Consensus 391 ----p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 420 (473)
|.|-+.-.||.|||||. .+|+||-+|+.+
T Consensus 665 L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 665 LQIVPISQANADQRAGRAGRT-GPGTCYRLYTED 697 (1042)
T ss_pred eEEEechhccchhhccccCCC-CCcceeeehhhh
Confidence 55777888999999999 689999999984
No 122
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.85 E-value=3.3e-19 Score=187.46 Aligned_cols=144 Identities=19% Similarity=0.318 Sum_probs=123.6
Q ss_pred hHHHHHHHHHhHh-CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCC
Q 012013 299 KYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGL 377 (473)
Q Consensus 299 k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gi 377 (473)
+...+++.|.... .+.++||||+++..++.+++.|...++++..+|+++++.+|..+++.|+.|.+.|||||+++++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 3445555555543 456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCC-----CCCHHHHHHhhccccCCCCCcEEEEEecc---------ccHHHHHHHHHHHHHhCCCCCHHH
Q 012013 378 DVKDVKYVINYDF-----PGSLEDYVHRIGRTGRAGAKGTAYTFFTA---------ANARFAKELITILEEAGQKVSPEL 443 (473)
Q Consensus 378 di~~v~~Vi~~~~-----p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~---------~~~~~~~~l~~~l~~~~~~~~~~l 443 (473)
|+|++++||++|. |.+..+|+||+||+||. ..|.|++|++. .+....+++..........+|...
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 9999999999885 78999999999999996 78999999984 344556666666777777777655
No 123
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=1.7e-20 Score=179.25 Aligned_cols=263 Identities=21% Similarity=0.263 Sum_probs=190.6
Q ss_pred CCCCHHHHHHHHHHhcC---CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 120 FEPTPIQAQGWPMALKG---RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~---~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
..++|||.+++..+.-+ ++.|++.|+|+|||++-+-++. .+ .+.+||||.+-..++||..++..|.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 47899999999887743 5889999999999987543332 21 4569999999999999999999997
Q ss_pred cCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHH-------------HHHHccCccccceeEEeecchhhhhhCCC
Q 012013 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-------------DMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (473)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~-------------~~l~~~~~~l~~~~~vVvDEah~l~~~~~ 263 (473)
...+-.++.++..... ....++.|+|+|+.++. +++.. ....++|+||+|.+...-|
T Consensus 370 ti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~-----~EWGllllDEVHvvPA~MF 439 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG-----REWGLLLLDEVHVVPAKMF 439 (776)
T ss_pred ccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc-----CeeeeEEeehhccchHHHH
Confidence 6655555555554322 23457899999986553 33332 3467899999999888777
Q ss_pred HHHHHHHHhhhhcCCCC-c-------------------cc---------------------------------cccceee
Q 012013 264 EPQIKKILSQVIIGSPD-L-------------------KA---------------------------------NHAIRQH 290 (473)
Q Consensus 264 ~~~~~~i~~~~~~~~~~-~-------------------~~---------------------------------~~~i~~~ 290 (473)
+..+.-+....-++-.. + .+ ....+..
T Consensus 440 RRVlsiv~aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 440 RRVLSIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHHHHHHhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 77776665542222110 0 00 0001111
Q ss_pred EEecCchhhHHHHHHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhc-CCCcEEE
Q 012013 291 VDIVSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA-GKSPIMT 368 (473)
Q Consensus 291 ~~~~~~~~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~-g~~~iLv 368 (473)
...+.+..|++...-+++.+.. +.|+|||....-.....+-.|.+. +|+|..++.+|..+++.|+- ..++-++
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~Kp-----fIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGKP-----FIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCCc-----eEECCCchhHHHHHHHhcccCCccceEE
Confidence 2233445666666666655543 569999999888777777777554 78999999999999999995 4788899
Q ss_pred EecccccCCCCCCCCEEEEcCCC-CCHHHHHHhhccccCCC
Q 012013 369 ATDVAARGLDVKDVKYVINYDFP-GSLEDYVHRIGRTGRAG 408 (473)
Q Consensus 369 aT~~~~~Gidi~~v~~Vi~~~~p-~s~~~~~Qr~GR~gR~g 408 (473)
.+.+....+|+|.++++|....- .|-.+-.||.||..|+.
T Consensus 595 lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 99999999999999999977654 46788999999999864
No 124
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.85 E-value=1.4e-19 Score=191.08 Aligned_cols=273 Identities=18% Similarity=0.193 Sum_probs=166.7
Q ss_pred CCHHHHHHHHHHh----c------CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 012013 122 PTPIQAQGWPMAL----K------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (473)
Q Consensus 122 ~~~~Q~~~i~~i~----~------~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~ 191 (473)
++++|..|+..+. . .+..+++++||||||++++..+ ..+... ...+++|||+|+.+|..|+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la-~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA-RKALEL-----LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH-HHHHhh-----cCCCeEEEEECcHHHHHHHHHH
Confidence 7889999998754 2 2578999999999998855443 333321 2368899999999999999999
Q ss_pred HHHhccCCCceEEEEEcCccCccchHHhh-cCCcEEEeChHHHHHHHHcc--Cccccc-eeEEeecchhhhhhCCCHHHH
Q 012013 192 STKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESH--NTNLRR-VTYLVLDEADRMLDMGFEPQI 267 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~--~~~l~~-~~~vVvDEah~l~~~~~~~~~ 267 (473)
+..+..... ....+.......+. ....|+|+|.++|...+... ...... -.+||+||||+.....+...+
T Consensus 313 f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l 386 (667)
T TIGR00348 313 FQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNL 386 (667)
T ss_pred HHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHH
Confidence 999864211 00011111112222 24689999999998644321 111111 138999999997665555555
Q ss_pred HHHHhh-hhcC---CCCcc-------ccc----ccee--------------e--EEec-----Cchhh------------
Q 012013 268 KKILSQ-VIIG---SPDLK-------ANH----AIRQ--------------H--VDIV-----SESQK------------ 299 (473)
Q Consensus 268 ~~i~~~-~~~~---~~~~~-------~~~----~i~~--------------~--~~~~-----~~~~k------------ 299 (473)
+..+.. ..++ +|... ... .+.. . +... ....+
T Consensus 387 ~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~ 466 (667)
T TIGR00348 387 KKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELL 466 (667)
T ss_pred HhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhh
Confidence 544332 1110 11000 000 0000 0 0000 00000
Q ss_pred ----------------------------HHHHH----HHHHhHhC--CCeEEEEeCChHHHHHHHHHHHhC-----CCCe
Q 012013 300 ----------------------------YNKLV----KLLEDIMD--GSRILIFMDTKKGCDQITRQLRMD-----GWPA 340 (473)
Q Consensus 300 ----------------------------~~~l~----~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~ 340 (473)
...+. +....... ..+.+|||.++..|..+++.|.+. +...
T Consensus 467 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~ 546 (667)
T TIGR00348 467 PERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASA 546 (667)
T ss_pred hccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCee
Confidence 01111 11111112 368999999999999999988654 2345
Q ss_pred EEecCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHH
Q 012013 341 LSIHGDKSQA---------------------ERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 398 (473)
Q Consensus 341 ~~ihg~~~~~---------------------~r~~~~~~f~~-g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~ 398 (473)
+.+++..+.. ....++++|++ +..+|||+++.+.+|+|.|.+++++...+..+ ..++
T Consensus 547 vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~Ll 625 (667)
T TIGR00348 547 IVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLL 625 (667)
T ss_pred EEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHH
Confidence 5666554322 12468889976 68899999999999999999998887776554 4589
Q ss_pred HhhccccCC
Q 012013 399 HRIGRTGRA 407 (473)
Q Consensus 399 Qr~GR~gR~ 407 (473)
|++||+.|.
T Consensus 626 Qai~R~nR~ 634 (667)
T TIGR00348 626 QAIARTNRI 634 (667)
T ss_pred HHHHHhccc
Confidence 999999994
No 125
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.84 E-value=1.1e-19 Score=189.41 Aligned_cols=294 Identities=20% Similarity=0.218 Sum_probs=195.8
Q ss_pred CCCHHHHHHHHHHh--c--CCcEEEEccCCCChhHHhHHHHHHHHhcC-CCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 121 EPTPIQAQGWPMAL--K--GRDLIGIAETGSGKTLAYLLPAIVHVNAQ-PFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~--~--~~~~l~~a~TGsGKT~~~~l~~l~~~~~~-~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
+++.||++.++++. . +-+.|+|..+|.|||+..+-.+....... .....-.....|||||. .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 46889999998864 2 45889999999999997543333222222 11111123348999997 7999999999999
Q ss_pred ccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhh---------------
Q 012013 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD--------------- 260 (473)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~--------------- 260 (473)
.+. +++....|+...+...+.-.++.+|+|++|+.+.+.+..- .-..+.|+|+||-|-+-+
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l--~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~ 1129 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYL--IKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRAN 1129 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHH--HhcccceEEecCcceecchHHHHHHHHHHHhhc
Confidence 877 5666666655444444444456799999998876433221 112467999999994321
Q ss_pred -------------------------CCC---HHHHHH-----HHhh----------------------------------
Q 012013 261 -------------------------MGF---EPQIKK-----ILSQ---------------------------------- 273 (473)
Q Consensus 261 -------------------------~~~---~~~~~~-----i~~~---------------------------------- 273 (473)
.|| +.+++. |+..
T Consensus 1130 hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKe 1209 (1549)
T KOG0392|consen 1130 HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKE 1209 (1549)
T ss_pred ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111111 1000
Q ss_pred ----------------------------h----------hcCCCCcccc---ccceeeE---------------------
Q 012013 274 ----------------------------V----------IIGSPDLKAN---HAIRQHV--------------------- 291 (473)
Q Consensus 274 ----------------------------~----------~~~~~~~~~~---~~i~~~~--------------------- 291 (473)
+ .++..+.... ..+-|..
T Consensus 1210 dVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~l 1289 (1549)
T KOG0392|consen 1210 DVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDL 1289 (1549)
T ss_pred HHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchH
Confidence 0 0000000000 0000000
Q ss_pred --------------EecCchhhHHHHHHHHHhHh---------------CCCeEEEEeCChHHHHHHHHHHHhCCC---C
Q 012013 292 --------------DIVSESQKYNKLVKLLEDIM---------------DGSRILIFMDTKKGCDQITRQLRMDGW---P 339 (473)
Q Consensus 292 --------------~~~~~~~k~~~l~~~l~~~~---------------~~~~~lVf~~~~~~~~~l~~~L~~~~~---~ 339 (473)
.......|..+|.++|.+.. .++++||||+-+..++.+.+-|-+... .
T Consensus 1290 a~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVt 1369 (1549)
T KOG0392|consen 1290 AAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVT 1369 (1549)
T ss_pred HHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCcee
Confidence 00122356677777776532 235999999999999999988865432 3
Q ss_pred eEEecCCCCHHHHHHHHHHHhcC-CCcEE-EEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEe
Q 012013 340 ALSIHGDKSQAERDWVLSEFKAG-KSPIM-TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 417 (473)
Q Consensus 340 ~~~ihg~~~~~~r~~~~~~f~~g-~~~iL-vaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 417 (473)
...+.|..++.+|.++.++|+++ .++|| ++|.+.+-|+|+..+++||+++-.|||-.-.|.+.||+|.||+..+-+|-
T Consensus 1370 ymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyR 1449 (1549)
T KOG0392|consen 1370 YMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYR 1449 (1549)
T ss_pred EEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeee
Confidence 45799999999999999999998 67876 56699999999999999999999999999999999999999986655544
Q ss_pred cc
Q 012013 418 TA 419 (473)
Q Consensus 418 ~~ 419 (473)
.-
T Consensus 1450 lI 1451 (1549)
T KOG0392|consen 1450 LI 1451 (1549)
T ss_pred eh
Confidence 33
No 126
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.83 E-value=6.5e-19 Score=168.22 Aligned_cols=141 Identities=18% Similarity=0.225 Sum_probs=113.4
Q ss_pred hhhHHHHHHHHHhHhCC---CeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcC-CCcE-EEEec
Q 012013 297 SQKYNKLVKLLEDIMDG---SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPI-MTATD 371 (473)
Q Consensus 297 ~~k~~~l~~~l~~~~~~---~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g-~~~i-LvaT~ 371 (473)
+.|+.+|.+-|...... -|.|||.+.....+.+.-.|.+.|+.++-+.|+|++..|...++.|++. .+.| ||+-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 45667776655544432 2889999999999999999999999999999999999999999999976 5555 56669
Q ss_pred ccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCC--cEEEEEeccccHHHHHHHHHHHHHhCCCC
Q 012013 372 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK--GTAYTFFTAANARFAKELITILEEAGQKV 439 (473)
Q Consensus 372 ~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 439 (473)
+.+.-+|+..+.+|+.+|++||++.-.|...|.+|.||. =.++.|+.++ .+-..+++.-+++.+.+
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn--siE~kIieLQeKKa~mi 766 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN--SIEEKIIELQEKKANMI 766 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc--cHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999985 4555566554 34455666555554433
No 127
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.9e-18 Score=167.17 Aligned_cols=124 Identities=21% Similarity=0.343 Sum_probs=108.7
Q ss_pred HHHHHHHH-HhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCC
Q 012013 300 YNKLVKLL-EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 378 (473)
Q Consensus 300 ~~~l~~~l-~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gid 378 (473)
.+.|+.-+ .....+.++||-+=|++.|+.|.++|...|+++..+|++...-+|.+++.+.+.|.++|||..+.+-+|+|
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLD 511 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCC
Confidence 34444333 33556779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCC-----CCCHHHHHHhhccccCCCCCcEEEEEeccccHHH
Q 012013 379 VKDVKYVINYDF-----PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 424 (473)
Q Consensus 379 i~~v~~Vi~~~~-----p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 424 (473)
+|.|.+|..+|. ..|-.+.+|-+|||.|. ..|.++++.+.-...+
T Consensus 512 iPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~iT~sM 561 (663)
T COG0556 512 LPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSM 561 (663)
T ss_pred CcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchhhhHHH
Confidence 999999999885 45889999999999997 7899999887654433
No 128
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=6.8e-19 Score=176.55 Aligned_cols=279 Identities=23% Similarity=0.303 Sum_probs=173.6
Q ss_pred HHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hcc-CCCceEE
Q 012013 127 AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGA-SSKIKST 204 (473)
Q Consensus 127 ~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~-~~~-~~~~~~~ 204 (473)
++.+.+|..+-.+|+|+.||||||+ .+|-+.+-..........+..+=|.-|+|.-|..++++... ++. ...+...
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 3455556667778999999999998 45543332211111112244677888999777666665543 222 1112223
Q ss_pred EEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHh------------
Q 012013 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS------------ 272 (473)
Q Consensus 205 ~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~------------ 272 (473)
..+.+.. .....|.++|.+.|++-++++. .|..++.||+||||.-.- ..+.+..++.
T Consensus 340 IRfd~ti--------~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~~ke 408 (1172)
T KOG0926|consen 340 IRFDGTI--------GEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKYYKE 408 (1172)
T ss_pred EEecccc--------CCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHHhhh
Confidence 3333332 3456899999999999888764 488999999999995211 0111111111
Q ss_pred -------hhhcCCCCccccccc---------ee-------------eEEecCchhh----HHHHHHHHHhHhCCCeEEEE
Q 012013 273 -------QVIIGSPDLKANHAI---------RQ-------------HVDIVSESQK----YNKLVKLLEDIMDGSRILIF 319 (473)
Q Consensus 273 -------~~~~~~~~~~~~~~i---------~~-------------~~~~~~~~~k----~~~l~~~l~~~~~~~~~lVf 319 (473)
.+++.++++...+.. .. ++......+. +.....+-+. .+.+.||||
T Consensus 409 ~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~k-LP~G~ILVF 487 (1172)
T KOG0926|consen 409 QCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKK-LPPGGILVF 487 (1172)
T ss_pred hcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhc-CCCCcEEEE
Confidence 133333333222111 00 1111111111 1222222222 345679999
Q ss_pred eCChHHHHHHHHHHHhCC---C----------------------------------------------------------
Q 012013 320 MDTKKGCDQITRQLRMDG---W---------------------------------------------------------- 338 (473)
Q Consensus 320 ~~~~~~~~~l~~~L~~~~---~---------------------------------------------------------- 338 (473)
+....+++.|++.|++.- +
T Consensus 488 vTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa 567 (1172)
T KOG0926|consen 488 VTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAA 567 (1172)
T ss_pred EeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhh
Confidence 999999999999997530 0
Q ss_pred --------------------------------------CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC
Q 012013 339 --------------------------------------PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 380 (473)
Q Consensus 339 --------------------------------------~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~ 380 (473)
-|+.+++-++..++..+++.-..|..=++|||+++++.+.||
T Consensus 568 ~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIP 647 (1172)
T KOG0926|consen 568 FNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIP 647 (1172)
T ss_pred hhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccC
Confidence 011456667777777888877888888999999999999999
Q ss_pred CCCEEEEcCC--------C----------CCHHHHHHhhccccCCCCCcEEEEEeccc
Q 012013 381 DVKYVINYDF--------P----------GSLEDYVHRIGRTGRAGAKGTAYTFFTAA 420 (473)
Q Consensus 381 ~v~~Vi~~~~--------p----------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 420 (473)
++.+||..+. - .|-++--||+|||||. .+|+||-+|+..
T Consensus 648 gIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRt-gpGHcYRLYSSA 704 (1172)
T KOG0926|consen 648 GIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRT-GPGHCYRLYSSA 704 (1172)
T ss_pred CeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCC-CCCceeehhhhH
Confidence 9999995543 2 2455566999999999 489999998864
No 129
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.82 E-value=1.3e-18 Score=166.29 Aligned_cols=286 Identities=17% Similarity=0.238 Sum_probs=191.9
Q ss_pred CCCCCHHHHHHHHHHh-cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 012013 119 FFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~ 197 (473)
+..+.|+|.+.+...+ .|..+++...+|.|||+.++.-+..+..+.+ .|||||. .+-..|.+.+.+|.+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwp---------lliVcPA-svrftWa~al~r~lp 265 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWP---------LLIVCPA-SVRFTWAKALNRFLP 265 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCc---------EEEEecH-HHhHHHHHHHHHhcc
Confidence 4467999999998866 5678999999999999986644443333332 8999997 577889999999976
Q ss_pred CCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHH--H---HHHHHh
Q 012013 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP--Q---IKKILS 272 (473)
Q Consensus 198 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~--~---~~~i~~ 272 (473)
..-- +.++.++..... .+.....|.|.+++.|..+-..- .-..+.+||+||+|.+-+..-.. . +.+...
T Consensus 266 s~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~l--~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~ak 339 (689)
T KOG1000|consen 266 SIHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDIL--KKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAK 339 (689)
T ss_pred cccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHHH--hcccceEEEEechhhhhccchhhhhhhhhHHHHhh
Confidence 5432 444444433321 12234579999998876543321 12348899999999765422100 0 000000
Q ss_pred hhhc--CCCCcc--------------------------------------------------------------------
Q 012013 273 QVII--GSPDLK-------------------------------------------------------------------- 282 (473)
Q Consensus 273 ~~~~--~~~~~~-------------------------------------------------------------------- 282 (473)
.+++ +++...
T Consensus 340 hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 340 HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000 000000
Q ss_pred ccccceeeEEecC-------------------------------------chhhHHHHHHHHHhH-----hCCCeEEEEe
Q 012013 283 ANHAIRQHVDIVS-------------------------------------ESQKYNKLVKLLEDI-----MDGSRILIFM 320 (473)
Q Consensus 283 ~~~~i~~~~~~~~-------------------------------------~~~k~~~l~~~l~~~-----~~~~~~lVf~ 320 (473)
......+.+..+. ...|...+.+.|... ....|++|||
T Consensus 420 LPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 420 LPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred CCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 0000011111110 011233334444431 1234999999
Q ss_pred CChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcC-CCcE-EEEecccccCCCCCCCCEEEEcCCCCCHHHHH
Q 012013 321 DTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPI-MTATDVAARGLDVKDVKYVINYDFPGSLEDYV 398 (473)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g-~~~i-LvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~ 398 (473)
......+.+...+.+.++..+.|.|..+..+|+...+.|+.. +..| +++..+++.|+++...+.||+..++||+.-.+
T Consensus 500 HH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLl 579 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLL 579 (689)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEE
Confidence 999999999999999999999999999999999999999965 5565 45558899999999999999999999999999
Q ss_pred HhhccccCCCCCcEEEEEeccc
Q 012013 399 HRIGRTGRAGAKGTAYTFFTAA 420 (473)
Q Consensus 399 Qr~GR~gR~g~~g~~~~~~~~~ 420 (473)
|.-.|++|.||+..+.+.|.-.
T Consensus 580 QAEDRaHRiGQkssV~v~ylvA 601 (689)
T KOG1000|consen 580 QAEDRAHRIGQKSSVFVQYLVA 601 (689)
T ss_pred echhhhhhccccceeeEEEEEe
Confidence 9999999999997666655543
No 130
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.82 E-value=4.5e-18 Score=176.16 Aligned_cols=285 Identities=24% Similarity=0.334 Sum_probs=189.0
Q ss_pred CCCCHHHHHHHHHHhcC----CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 120 FEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~----~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
..+++-|..++..+.+. ...++.+.||||||.+|+- ++...+.+ |..+|+|+|-.+|-.|+.+.|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~-~i~~~L~~-------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLE-AIAKVLAQ-------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHH-HHHHHHHc-------CCEEEEEeccccchHHHHHHHHHH
Confidence 35788899999998766 5789999999999999665 45555543 788999999999999999999875
Q ss_pred ccCCCceEEEEEcCccCccchHHhh----cCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhh---hCCCHHHHH
Q 012013 196 GASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML---DMGFEPQIK 268 (473)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~---~~~~~~~~~ 268 (473)
.. .++.+++++.+..+....+. ....|+|+|-..+ ...++++.+|||||-|.-. +.+.+-..+
T Consensus 269 Fg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 269 FG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred hC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHH
Confidence 42 56778888877655544432 4578999993221 2357889999999999532 111121222
Q ss_pred HHH---hh-----hhcCCCCcccc-----------------------ccceeeEEecCchhhH-----HHHHHHHHhH-h
Q 012013 269 KIL---SQ-----VIIGSPDLKAN-----------------------HAIRQHVDIVSESQKY-----NKLVKLLEDI-M 311 (473)
Q Consensus 269 ~i~---~~-----~~~~~~~~~~~-----------------------~~i~~~~~~~~~~~k~-----~~l~~~l~~~-~ 311 (473)
.+. .. +.+++++.+.. ....+.+++..+..+. ..|++.+++. .
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~ 418 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLE 418 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHh
Confidence 221 11 33333332111 0011112222222222 4455555443 4
Q ss_pred CCCeEEEEeCChH------------------------------------------------------------HHHHHHH
Q 012013 312 DGSRILIFMDTKK------------------------------------------------------------GCDQITR 331 (473)
Q Consensus 312 ~~~~~lVf~~~~~------------------------------------------------------------~~~~l~~ 331 (473)
.+.++|+|+|.+- -++.+++
T Consensus 419 ~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteriee 498 (730)
T COG1198 419 RGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEE 498 (730)
T ss_pred cCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHH
Confidence 4668999988652 3344555
Q ss_pred HHHh--CCCCeEEecCCCCHHH--HHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCC------------CHH
Q 012013 332 QLRM--DGWPALSIHGDKSQAE--RDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG------------SLE 395 (473)
Q Consensus 332 ~L~~--~~~~~~~ihg~~~~~~--r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~------------s~~ 395 (473)
.|.. .+.+++.+.++..... -+..++.|.+|+.+|||.|++++.|.|+|+++.|...|... ...
T Consensus 499 eL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fq 578 (730)
T COG1198 499 ELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQ 578 (730)
T ss_pred HHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHH
Confidence 5543 2567778888776543 45789999999999999999999999999999977555432 234
Q ss_pred HHHHhhccccCCCCCcEEEEEeccccH
Q 012013 396 DYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 396 ~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
.+.|-.|||||.+.+|.+++-.-..+.
T Consensus 579 ll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 579 LLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred HHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 567899999999999988876544443
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=6.9e-18 Score=174.29 Aligned_cols=288 Identities=22% Similarity=0.268 Sum_probs=200.2
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 200 (473)
.|++.|.-+--.+..| -|+.+.||-|||+++.+|++...+. |..|-||+...-||..-++++..+...++
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fLG 147 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFLG 147 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHhC
Confidence 5777777666555544 5789999999999999999877665 66688888889999999999999888899
Q ss_pred ceEEEEEcCccCccchHHhhcCCcEEEeChHHHH-HHHHcc------CccccceeEEeecchhhhh-hCC----------
Q 012013 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRML-DMG---------- 262 (473)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~------~~~l~~~~~vVvDEah~l~-~~~---------- 262 (473)
+.+.++..+..... +.-.-.|+|+++|...|- ++|..+ ....+.+.+.||||+|.++ |..
T Consensus 148 LsvG~i~~~~~~~~--rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~ 225 (925)
T PRK12903 148 LSVGINKANMDPNL--KREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQ 225 (925)
T ss_pred CceeeeCCCCChHH--HHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCC
Confidence 99988877654432 222346899999987754 333322 1224678899999999653 100
Q ss_pred -----CHHHHHHHHhh----------------------------------------------------------------
Q 012013 263 -----FEPQIKKILSQ---------------------------------------------------------------- 273 (473)
Q Consensus 263 -----~~~~~~~i~~~---------------------------------------------------------------- 273 (473)
+...+..+...
T Consensus 226 ~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV 305 (925)
T PRK12903 226 SNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIV 305 (925)
T ss_pred ccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 00000000000
Q ss_pred ----------------------------------hhcCC-----------------------------------------
Q 012013 274 ----------------------------------VIIGS----------------------------------------- 278 (473)
Q Consensus 274 ----------------------------------~~~~~----------------------------------------- 278 (473)
+.+..
T Consensus 306 ~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~ 385 (925)
T PRK12903 306 RDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMR 385 (925)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCC
Confidence 00000
Q ss_pred -CCccccccc----eeeEEecCchhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHH
Q 012013 279 -PDLKANHAI----RQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAER 352 (473)
Q Consensus 279 -~~~~~~~~i----~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r 352 (473)
...+.+..+ ...........|+..+++-+.+. ..+.||||.|.+++..+.|+..|.+.+++..+++..-.. +
T Consensus 386 Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e--~ 463 (925)
T PRK12903 386 VNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNA--R 463 (925)
T ss_pred EEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchh--h
Confidence 000000000 01112334567888887766654 456699999999999999999999999999999986443 3
Q ss_pred HHHHHHHhcCC-CcEEEEecccccCCCCCCCC--------EEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHH
Q 012013 353 DWVLSEFKAGK-SPIMTATDVAARGLDVKDVK--------YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 423 (473)
Q Consensus 353 ~~~~~~f~~g~-~~iLvaT~~~~~Gidi~~v~--------~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 423 (473)
+.-+-. ..|. -.|.|||++++||.||.--. |||....+.|..--.|..||+||.|.+|.+..|++-.|.-
T Consensus 464 EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L 542 (925)
T PRK12903 464 EAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQL 542 (925)
T ss_pred HHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHH
Confidence 322222 4563 45999999999999997432 8999999999888899999999999999999998877653
No 132
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.81 E-value=6.9e-19 Score=148.03 Aligned_cols=120 Identities=45% Similarity=0.751 Sum_probs=111.6
Q ss_pred hhhHHHHHHHHHhHh-CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 012013 297 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 375 (473)
Q Consensus 297 ~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~ 375 (473)
..|...+.+++.... .++++||||++...++.+++.|.+.+..+..+||+++..+|..+++.|+++..+||++|+++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 368888888888765 4569999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEE
Q 012013 376 GLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 416 (473)
Q Consensus 376 Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 416 (473)
|+|+|.+++||++++|++...+.|++||++|.|+.|.++++
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999998888764
No 133
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=2.8e-18 Score=163.75 Aligned_cols=305 Identities=17% Similarity=0.229 Sum_probs=191.4
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEE
Q 012013 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (473)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 177 (473)
+..|...++++...+.+++..-...+..+.+.+..+..++-+++++.||||||...--..+...... ...|.+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------ccceee
Confidence 6778899999999988887655555666677777788889999999999999985444444444332 245888
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhh
Q 012013 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (473)
Q Consensus 178 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 257 (473)
..|.|.-|.+++.+...-- ++....-.|.....+... ..+.-+-+||.+.|++-..++.. +.++++||+||||.
T Consensus 97 TQprrvaamsva~RVadEM---Dv~lG~EVGysIrfEdC~--~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahE 170 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVADEM---DVTLGEEVGYSIRFEDCT--SPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHE 170 (699)
T ss_pred cCchHHHHHHHHHHHHHHh---ccccchhccccccccccC--ChhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhh
Confidence 8899999988887766532 222222222222211111 11223456787777776555543 78999999999995
Q ss_pred hh-h-CCCHHHHHHHHhh-----hhcCCCCc---------------ccc--ccceeeEEecCchhhHHHHHHHHHh-Hh-
Q 012013 258 ML-D-MGFEPQIKKILSQ-----VIIGSPDL---------------KAN--HAIRQHVDIVSESQKYNKLVKLLED-IM- 311 (473)
Q Consensus 258 l~-~-~~~~~~~~~i~~~-----~~~~~~~~---------------~~~--~~i~~~~~~~~~~~k~~~l~~~l~~-~~- 311 (473)
-. . ....-.++.+... +++.+.++ ... ..+...+....+.+.++..+..+-+ +.
T Consensus 171 RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg~~PvEi~Yt~e~erDylEaairtV~qih~~ 250 (699)
T KOG0925|consen 171 RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPGTHPVEIFYTPEPERDYLEAAIRTVLQIHMC 250 (699)
T ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCCCCceEEEecCCCChhHHHHHHHHHHHHHhc
Confidence 21 1 0111111122111 11111111 111 1111111112233334443333222 22
Q ss_pred -CCCeEEEEeCChHHHHHHHHHHHhC---------CCCeEEecCCCCHHHHHHHHHHHh---cC--CCcEEEEecccccC
Q 012013 312 -DGSRILIFMDTKKGCDQITRQLRMD---------GWPALSIHGDKSQAERDWVLSEFK---AG--KSPIMTATDVAARG 376 (473)
Q Consensus 312 -~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~ihg~~~~~~r~~~~~~f~---~g--~~~iLvaT~~~~~G 376 (473)
..+-+|||....++++..++.+... ..+++.+| +.++..+++--. +| ..+|+|+|++++..
T Consensus 251 ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaets 326 (699)
T KOG0925|consen 251 EEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETS 326 (699)
T ss_pred cCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchhee
Confidence 2457999999999999999888632 24577787 444444443322 12 36799999999999
Q ss_pred CCCCCCCEEEEcCC------------------CCCHHHHHHhhccccCCCCCcEEEEEeccc
Q 012013 377 LDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 420 (473)
Q Consensus 377 idi~~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 420 (473)
+.|+.+.+||.-++ |.|..+-.||.||+||. .+|+|+.+|++.
T Consensus 327 ltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 327 LTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred eeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 99999999996553 66888899999999999 899999999975
No 134
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.78 E-value=1.5e-17 Score=172.10 Aligned_cols=131 Identities=20% Similarity=0.312 Sum_probs=113.5
Q ss_pred chhhHHHHHHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEecc
Q 012013 296 ESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK--SPIMTATDV 372 (473)
Q Consensus 296 ~~~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~--~~iLvaT~~ 372 (473)
+..|++.|.-+|+++.. ++++|||++-.+..+.|..+|...|+..+.+.|....++|+.++++|+... .++|++|..
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 35678888888877765 559999999999999999999999999999999999999999999999875 467889999
Q ss_pred cccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHH
Q 012013 373 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 426 (473)
Q Consensus 373 ~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 426 (473)
.+.|||+..++.||+||..||+.--.|.-.|++|.|+...+++|-.-++..+-.
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEe 1391 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEE 1391 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHH
Confidence 999999999999999999999999999999999999887777666555444433
No 135
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.77 E-value=3.2e-17 Score=170.44 Aligned_cols=127 Identities=24% Similarity=0.237 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 200 (473)
.|++.|.-+. +.-++..|+.+.||.|||+++.+|++...+. +..|.||+++..||.+-++++..+...++
T Consensus 76 r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 76 RHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 4666666554 4445678999999999999999999766654 67799999999999999999999999999
Q ss_pred ceEEEEEcCccCccchHHhhcCCcEEEeChHHHH-HHHHcc------CccccceeEEeecchhhhh
Q 012013 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRML 259 (473)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~------~~~l~~~~~vVvDEah~l~ 259 (473)
+.+.++.++.+... +...-.|+|+++|...|- +.|... ....+.+.+.||||+|.++
T Consensus 146 Lsvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 146 LTVGLIQEGMSSEE--RKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred CceeeeCCCCChHH--HHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 99998877665432 223445899999986543 233221 1134668999999999653
No 136
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.77 E-value=3.5e-18 Score=165.69 Aligned_cols=254 Identities=19% Similarity=0.240 Sum_probs=167.1
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchH
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 217 (473)
-++-++||.||||.- +++++.. ....++.-|.|-||.++++.+.+.+ +.+-.++|.......-.
T Consensus 193 Ii~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~ 256 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN 256 (700)
T ss_pred EEEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC
Confidence 345579999999975 5566554 4568999999999999999998876 44545555432211111
Q ss_pred HhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhhh------cCCCC----------c
Q 012013 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVI------IGSPD----------L 281 (473)
Q Consensus 218 ~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~~------~~~~~----------~ 281 (473)
...+..+-||.++ +.- -..+++.|+||++.|.|....-...+-+.-+. .+.+. .
T Consensus 257 --~~~a~hvScTVEM----~sv----~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~ 326 (700)
T KOG0953|consen 257 --GNPAQHVSCTVEM----VSV----NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKM 326 (700)
T ss_pred --CCcccceEEEEEE----eec----CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhh
Confidence 1224566666332 211 23578899999998877543222221111100 00000 0
Q ss_pred cccccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCC-eEEecCCCCHHHHHHHHHHHh
Q 012013 282 KANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAERDWVLSEFK 360 (473)
Q Consensus 282 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~ihg~~~~~~r~~~~~~f~ 360 (473)
.-.......++......-.+.++.-+..+.++..++.| +++.+..+...+++.+.. +.+|+|+++++.|.+.-..|+
T Consensus 327 TGd~vev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~F--Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FN 404 (700)
T KOG0953|consen 327 TGDDVEVREYERLSPLVVEETALGSLSNLKPGDCVVAF--SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFN 404 (700)
T ss_pred cCCeeEEEeecccCcceehhhhhhhhccCCCCCeEEEe--ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhC
Confidence 00000111122222222223555666666666665544 788999999999988766 999999999999999999999
Q ss_pred c--CCCcEEEEecccccCCCCCCCCEEEEcCCC---------CCHHHHHHhhccccCCCCC---cEEEEEeccc
Q 012013 361 A--GKSPIMTATDVAARGLDVKDVKYVINYDFP---------GSLEDYVHRIGRTGRAGAK---GTAYTFFTAA 420 (473)
Q Consensus 361 ~--g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p---------~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~ 420 (473)
+ ++++||||||++++|+|+ +++-||++++- ....+..|.+|||||.|.. |.+.++..++
T Consensus 405 d~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 405 DPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred CCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 7 899999999999999999 79999988863 3678899999999998753 6666665543
No 137
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.76 E-value=2.4e-16 Score=169.33 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=90.7
Q ss_pred HHHHHHHhHh-CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC
Q 012013 302 KLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 380 (473)
Q Consensus 302 ~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~ 380 (473)
.+.+.+..+. .++++||++++.+..+.+++.|....+.+ ...|... .+..++++|++++..||++|..+.+|||+|
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p 711 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFV 711 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCC
Confidence 4444443332 35689999999999999999997654444 4444322 245689999998889999999999999997
Q ss_pred C--CCEEEEcCCCC----C--------------------------HHHHHHhhccccCCCCCcEEEEEeccc--cHHHHH
Q 012013 381 D--VKYVINYDFPG----S--------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAA--NARFAK 426 (473)
Q Consensus 381 ~--v~~Vi~~~~p~----s--------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~~~--~~~~~~ 426 (473)
. ...||...+|. + ...+.|.+||.-|...+--++++++.. ...+-+
T Consensus 712 ~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~ 791 (820)
T PRK07246 712 QADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGK 791 (820)
T ss_pred CCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHH
Confidence 3 55566666552 1 233569999999986654345555543 456677
Q ss_pred HHHHHHHH
Q 012013 427 ELITILEE 434 (473)
Q Consensus 427 ~l~~~l~~ 434 (473)
.+++.|.+
T Consensus 792 ~~l~sLP~ 799 (820)
T PRK07246 792 QILASLAE 799 (820)
T ss_pred HHHHhCCC
Confidence 77777755
No 138
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.76 E-value=3.2e-18 Score=130.16 Aligned_cols=78 Identities=44% Similarity=0.705 Sum_probs=75.5
Q ss_pred HHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCC
Q 012013 331 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 408 (473)
Q Consensus 331 ~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 408 (473)
++|+..++.+..+||+++..+|..+++.|+++...|||||+++++|+|+|.+++||++++|+|+..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999999986
No 139
>COG4889 Predicted helicase [General function prediction only]
Probab=99.75 E-value=4.8e-18 Score=171.82 Aligned_cols=327 Identities=18% Similarity=0.225 Sum_probs=198.5
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC----CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCE
Q 012013 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (473)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~----~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 174 (473)
..|+.+.. .++..++.-+.-.+|+|+|++|+.+..++ ...=+++.+|+|||++.+ -+...+. ..+
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala---------~~~ 208 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA---------AAR 208 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh---------hhh
Confidence 34444322 34555566666779999999999998864 345667889999999854 3434333 357
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchH-------------------------HhhcCCcEEEeC
Q 012013 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR-------------------------DLQKGVEIVIAT 229 (473)
Q Consensus 175 vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~-------------------------~~~~~~~Iiv~T 229 (473)
+|+|+|+..|..|..++...- ....++...++++.....-.. ....+--||++|
T Consensus 209 iL~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsT 287 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFST 287 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEc
Confidence 999999999998877766543 244566666655433221110 011235699999
Q ss_pred hHHHHHHHHccCccccceeEEeecchhhhhh----------------CCCHHHHHHHHhhhh------------------
Q 012013 230 PGRLIDMLESHNTNLRRVTYLVLDEADRMLD----------------MGFEPQIKKILSQVI------------------ 275 (473)
Q Consensus 230 p~~l~~~l~~~~~~l~~~~~vVvDEah~l~~----------------~~~~~~~~~i~~~~~------------------ 275 (473)
++.+...-+....-+..|++||.||||+..- ...-...+.+.....
T Consensus 288 YQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~ 367 (1518)
T COG4889 288 YQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAE 367 (1518)
T ss_pred ccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccce
Confidence 9999887776666788999999999997421 112222233322100
Q ss_pred cCCCC--------c-------cccc----cceeeEEecCc----------------hhhHHHHHHHH-------HhHh--
Q 012013 276 IGSPD--------L-------KANH----AIRQHVDIVSE----------------SQKYNKLVKLL-------EDIM-- 311 (473)
Q Consensus 276 ~~~~~--------~-------~~~~----~i~~~~~~~~~----------------~~k~~~l~~~l-------~~~~-- 311 (473)
+.+-+ + .... ..+-.+..+.. .-..+..-.++ +...
T Consensus 368 l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~ 447 (1518)
T COG4889 368 LSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED 447 (1518)
T ss_pred eeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc
Confidence 00000 0 0000 00000000000 01111111111 1100
Q ss_pred -----------CCCeEEEEeCChHHHHHHHHHHHh-------------CCCCeE--EecCCCCHHHHHHHHH---HHhcC
Q 012013 312 -----------DGSRILIFMDTKKGCDQITRQLRM-------------DGWPAL--SIHGDKSQAERDWVLS---EFKAG 362 (473)
Q Consensus 312 -----------~~~~~lVf~~~~~~~~~l~~~L~~-------------~~~~~~--~ihg~~~~~~r~~~~~---~f~~g 362 (473)
+-.+.|-||.++++...+++.+.. .++.+. .+.|.|+..+|...+. .|...
T Consensus 448 n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n 527 (1518)
T COG4889 448 NDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN 527 (1518)
T ss_pred ccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc
Confidence 012678899998887777666531 233443 4568888888855443 35667
Q ss_pred CCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCC-cEEEEEec---------------cccHHHHH
Q 012013 363 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK-GTAYTFFT---------------AANARFAK 426 (473)
Q Consensus 363 ~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~-g~~~~~~~---------------~~~~~~~~ 426 (473)
+++||--..++++|||+|.++.||+|++-.++.+.+|.+||+.|.... .-.|+++. ..+.+.+.
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VW 607 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVW 607 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHH
Confidence 889998889999999999999999999999999999999999996321 22222221 22345567
Q ss_pred HHHHHHHHhCC
Q 012013 427 ELITILEEAGQ 437 (473)
Q Consensus 427 ~l~~~l~~~~~ 437 (473)
.+++.|+.+..
T Consensus 608 qVlnALRShD~ 618 (1518)
T COG4889 608 QVLKALRSHDE 618 (1518)
T ss_pred HHHHHHHhcCH
Confidence 77888877765
No 140
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.75 E-value=3.6e-17 Score=162.24 Aligned_cols=127 Identities=21% Similarity=0.316 Sum_probs=110.9
Q ss_pred CchhhHHHHHHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCc-EEEEecc
Q 012013 295 SESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP-IMTATDV 372 (473)
Q Consensus 295 ~~~~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~-iLvaT~~ 372 (473)
.++.|+..|.++|..+.. ++++|+|++-.+..+.+.++|...++..+.+.|.....+|..++.+|+...+- +|++|.+
T Consensus 1025 tdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1025 TDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRA 1104 (1185)
T ss_pred ccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEeccc
Confidence 345677778888877655 55999999999999999999999999999999999999999999999986554 5789999
Q ss_pred cccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEecccc
Q 012013 373 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 421 (473)
Q Consensus 373 ~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 421 (473)
.+-|||+..++.||+||..|+|..-.|.+.||+|.|++..+.++-.-..
T Consensus 1105 GGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1105 GGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred CcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 9999999999999999999999999999999999999866555544433
No 141
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.74 E-value=6.9e-17 Score=145.70 Aligned_cols=151 Identities=46% Similarity=0.672 Sum_probs=121.8
Q ss_pred CCCCCCCHHHHHHHHHHhcC-CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 117 AGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 117 ~~~~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.++..|+++|.+++..+... +.+++.++||+|||.+++.+++..+...+ ..++||++|++.++.|+.+.+.++
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45678999999999999998 99999999999999988888888776532 467999999999999999999988
Q ss_pred ccCCCceEEEEEcCccCccchHHhhcCC-cEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhh
Q 012013 196 GASSKIKSTCIYGGVPKGPQVRDLQKGV-EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (473)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~-~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~ 273 (473)
............++.........+..+. +|+++|++.+.+.+.........++++|+||+|.+....+...+..++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 7665534555555555444555555555 99999999999998887666778999999999999876667777666654
No 142
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=3.1e-16 Score=155.89 Aligned_cols=123 Identities=19% Similarity=0.246 Sum_probs=103.3
Q ss_pred chhhHHHHHHHHHhHhC--CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhc--CCCcEE-EEe
Q 012013 296 ESQKYNKLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA--GKSPIM-TAT 370 (473)
Q Consensus 296 ~~~k~~~l~~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~--g~~~iL-vaT 370 (473)
...|+..++++++.+.. ..+++|..+-......+...|.+.|+....+||.....+|+.+++.|+. |..+|+ ++-
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 34567777777777632 3478888887788888899999999999999999999999999999984 445665 555
Q ss_pred cccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEec
Q 012013 371 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 418 (473)
Q Consensus 371 ~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 418 (473)
.+.+.|+|+-..+|+|.+|+-||+.--.|...|.-|+|++..++++-.
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~ 854 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRL 854 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEE
Confidence 889999999999999999999999999999999999999877766543
No 143
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.4e-15 Score=158.05 Aligned_cols=127 Identities=23% Similarity=0.211 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 200 (473)
.|++.|. +-.+.-++.-|+.+.||-|||+++.+|++...+. |..|-||+++.-||..-++++..+...++
T Consensus 85 r~ydVQl--iGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 85 RHFDVQL--IGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred CcchhHH--HhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 4455554 4444446777899999999999999999887776 67799999999999999999999999999
Q ss_pred ceEEEEEcCccCccchHHhhcCCcEEEeChHHH-----HHHHHcc--CccccceeEEeecchhhhh
Q 012013 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-----IDMLESH--NTNLRRVTYLVLDEADRML 259 (473)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-----~~~l~~~--~~~l~~~~~vVvDEah~l~ 259 (473)
+.+.++.++... ..+...-.|+|+++|+..| .+.+... ....+.+.+.||||+|.++
T Consensus 155 Ltvg~i~~~~~~--~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 155 LSVGLIQQDMSP--EERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CeEEEECCCCCh--HHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999998776543 3333455789999999877 4444321 2235678999999999653
No 144
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.71 E-value=1.3e-14 Score=149.59 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=80.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcC----CCcEEEEecccccCCCC--------C
Q 012013 313 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG----KSPIMTATDVAARGLDV--------K 380 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g----~~~iLvaT~~~~~Gidi--------~ 380 (473)
.++++|.+.+...++.+++.|+..--..+.+.|+.+ .+..++++|+.. ...||++|+.+.+|||+ |
T Consensus 470 ~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~ 547 (636)
T TIGR03117 470 QGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDK 547 (636)
T ss_pred CCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCC
Confidence 558999999999999999998654223445566543 356688888874 78899999999999999 2
Q ss_pred --CCCEEEEcCCCCC-------------------------HHHHHHhhccccCCCCC--cEEEEEeccc-cHHHHHHHHH
Q 012013 381 --DVKYVINYDFPGS-------------------------LEDYVHRIGRTGRAGAK--GTAYTFFTAA-NARFAKELIT 430 (473)
Q Consensus 381 --~v~~Vi~~~~p~s-------------------------~~~~~Qr~GR~gR~g~~--g~~~~~~~~~-~~~~~~~l~~ 430 (473)
.+++||+..+|.. ...+.|-+||.-|...+ --.++++++. ...+.+.+.+
T Consensus 548 G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~~~ 627 (636)
T TIGR03117 548 DNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQE 627 (636)
T ss_pred CCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHHHH
Confidence 4888998777631 22356999999998665 3344444432 3344444444
Q ss_pred H
Q 012013 431 I 431 (473)
Q Consensus 431 ~ 431 (473)
.
T Consensus 628 ~ 628 (636)
T TIGR03117 628 S 628 (636)
T ss_pred H
Confidence 3
No 145
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=1.2e-16 Score=155.16 Aligned_cols=297 Identities=16% Similarity=0.118 Sum_probs=199.9
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
++--.....+|.+++..+.+|+++++.-.|.+||.+++.+.++......+ ....+++.|+++++....+.+.-.
T Consensus 281 ~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~V~ 354 (1034)
T KOG4150|consen 281 KNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKGQVVH 354 (1034)
T ss_pred cccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCceEEE
Confidence 34444678899999999999999999999999999999988877766543 455788999999986543322111
Q ss_pred ---ccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccC----ccccceeEEeecchhhhhhCC---CHH
Q 012013 196 ---GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN----TNLRRVTYLVLDEADRMLDMG---FEP 265 (473)
Q Consensus 196 ---~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~----~~l~~~~~vVvDEah~l~~~~---~~~ 265 (473)
-+...--++..+.+.........++.+.+++++.|..+......+. ..+-...++++||+|..+-.. ...
T Consensus 355 ~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~ 434 (1034)
T KOG4150|consen 355 VEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQD 434 (1034)
T ss_pred EEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHH
Confidence 0111122344555555555556667789999999988765443222 223445779999999533211 122
Q ss_pred HHHHHHhh-----------hhcCCCCcccc----------------------ccceeeEEec---------CchhhHHHH
Q 012013 266 QIKKILSQ-----------VIIGSPDLKAN----------------------HAIRQHVDIV---------SESQKYNKL 303 (473)
Q Consensus 266 ~~~~i~~~-----------~~~~~~~~~~~----------------------~~i~~~~~~~---------~~~~k~~~l 303 (473)
+++.+... +.-.+..+... ..-+..+... ..+.+....
T Consensus 435 ~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~ 514 (1034)
T KOG4150|consen 435 QLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEV 514 (1034)
T ss_pred HHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHH
Confidence 33333222 11111111110 0001111111 112334444
Q ss_pred HHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHhC----CC----CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 012013 304 VKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMD----GW----PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 374 (473)
Q Consensus 304 ~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~----~~----~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~ 374 (473)
..++.+... +-++|.||+.++-|+.+....+.- +. .+..+.|+...++|.++..+.-.|+..-+|||++++
T Consensus 515 s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALE 594 (1034)
T KOG4150|consen 515 SHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALE 594 (1034)
T ss_pred HHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhh
Confidence 445544443 459999999999999876655431 11 245688999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEec
Q 012013 375 RGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 418 (473)
Q Consensus 375 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 418 (473)
-||||-.++.|++.++|.|++.+.|..|||||.+++..++.+..
T Consensus 595 LGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 595 LGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred hccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 99999999999999999999999999999999988877765544
No 146
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.70 E-value=6e-17 Score=166.63 Aligned_cols=293 Identities=21% Similarity=0.316 Sum_probs=201.2
Q ss_pred CCCHHHHHHHHHHhc----CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 121 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
++.+||...+.++.+ +-+.|++.+||.|||.. .+.++.++++.. ...+| .||+||+..|.+ |..++.+|.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K---~~~GP-~LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK---QMQGP-FLIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc---ccCCC-eEEeccccccCC-chhhccccc
Confidence 789999999988764 34789999999999987 556666666542 12244 578889988865 888898887
Q ss_pred cCCCceEEEEEcCccCcc-c--hHHhhcCCcEEEeChHHHHHHHHccCccccc--eeEEeecchhhhhhC----------
Q 012013 197 ASSKIKSTCIYGGVPKGP-Q--VRDLQKGVEIVIATPGRLIDMLESHNTNLRR--VTYLVLDEADRMLDM---------- 261 (473)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~-~--~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~--~~~vVvDEah~l~~~---------- 261 (473)
+. +.. ..|.|.+... . ........+|+++|++.++. ++..|+. ..++||||.|+|.+.
T Consensus 468 PS--v~~-i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t 540 (1157)
T KOG0386|consen 468 PS--VQK-IQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNAICKLTDTLNT 540 (1157)
T ss_pred cc--eee-eeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccchhhHHHHHhhc
Confidence 55 333 3444443211 1 11223468999999888765 2223433 457999999986421
Q ss_pred CCHHHHHHHH----------------hh----------------------------------------------------
Q 012013 262 GFEPQIKKIL----------------SQ---------------------------------------------------- 273 (473)
Q Consensus 262 ~~~~~~~~i~----------------~~---------------------------------------------------- 273 (473)
.|..+-+-++ +.
T Consensus 541 ~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRR 620 (1157)
T KOG0386|consen 541 HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRR 620 (1157)
T ss_pred cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHh
Confidence 1111111110 00
Q ss_pred -------------------------------------hhcCC----CCc-----------------cccccc----eeeE
Q 012013 274 -------------------------------------VIIGS----PDL-----------------KANHAI----RQHV 291 (473)
Q Consensus 274 -------------------------------------~~~~~----~~~-----------------~~~~~i----~~~~ 291 (473)
+.++. ... ....++ ....
T Consensus 621 lKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~ 700 (1157)
T KOG0386|consen 621 LKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHY 700 (1157)
T ss_pred hhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccccccc
Confidence 00000 000 000000 0000
Q ss_pred ---EecCchhhHHHHHHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCC---
Q 012013 292 ---DIVSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS--- 364 (473)
Q Consensus 292 ---~~~~~~~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~--- 364 (473)
..+-.+.|+..|..+|-.+.. +++||.||.-..-.+.+.++|.-..++...+.|....++|...++.|+....
T Consensus 701 ~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf 780 (1157)
T KOG0386|consen 701 DIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYF 780 (1157)
T ss_pred ChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCcee
Confidence 111234566666666665544 6699999999999999999999999999999999999999999999996543
Q ss_pred cEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHH
Q 012013 365 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 426 (473)
Q Consensus 365 ~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 426 (473)
.+|.+|.+.+.|+|+..++.||.||..|++..+.|+.-||+|.|+...+-++....-.+...
T Consensus 781 ~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE 842 (1157)
T KOG0386|consen 781 IFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEE 842 (1157)
T ss_pred eeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHH
Confidence 47889999999999999999999999999999999999999999998887777665444333
No 147
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.70 E-value=6.4e-15 Score=161.23 Aligned_cols=134 Identities=13% Similarity=0.203 Sum_probs=93.5
Q ss_pred HHHHHHHHhHh--CCCeEEEEeCChHHHHHHHHHHHhCCC--CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccC
Q 012013 301 NKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 376 (473)
Q Consensus 301 ~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~--~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~G 376 (473)
..+.+.+..+. .++++|||+++.+..+.+++.|..... ....+.-+++...|..++++|+.++-.||++|..+.+|
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEG 817 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCc
Confidence 34444444433 346899999999999999999975422 12222223333457889999999888899999999999
Q ss_pred CCCCC--CCEEEEcCCCC----C--------------------------HHHHHHhhccccCCCCCcEEEEEeccc--cH
Q 012013 377 LDVKD--VKYVINYDFPG----S--------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAA--NA 422 (473)
Q Consensus 377 idi~~--v~~Vi~~~~p~----s--------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~~~--~~ 422 (473)
||+|+ +.+||...+|. + +..+.|.+||.-|..++--++++++.. ..
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k 897 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTT 897 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccc
Confidence 99997 47788777653 1 223469999999997664455555543 55
Q ss_pred HHHHHHHHHHHH
Q 012013 423 RFAKELITILEE 434 (473)
Q Consensus 423 ~~~~~l~~~l~~ 434 (473)
++-+.+.+.|..
T Consensus 898 ~Yg~~~l~sLP~ 909 (928)
T PRK08074 898 SYGKYFLESLPT 909 (928)
T ss_pred hHHHHHHHhCCC
Confidence 677777777754
No 148
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=2e-14 Score=150.93 Aligned_cols=124 Identities=23% Similarity=0.366 Sum_probs=99.8
Q ss_pred chhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCC-CcEEEEeccc
Q 012013 296 ESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK-SPIMTATDVA 373 (473)
Q Consensus 296 ~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~-~~iLvaT~~~ 373 (473)
...|++++++-+... ..+.||||-+.+++..+.|++.|...+++..+++......+-+.+-+ .|. -.|-|||+++
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNMA 686 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNMA 686 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccCc
Confidence 346677776655554 45669999999999999999999999999888888755444433333 343 3499999999
Q ss_pred ccCCCCC--------CCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 374 ARGLDVK--------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 374 ~~Gidi~--------~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
+||.||. .=-+||-...+.|...-.|-.||+||.|.+|.+..|++-.|.
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 9999997 234788888999999999999999999999999999887765
No 149
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.63 E-value=1.5e-15 Score=116.40 Aligned_cols=81 Identities=46% Similarity=0.735 Sum_probs=77.3
Q ss_pred HHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCC
Q 012013 328 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 407 (473)
Q Consensus 328 ~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 407 (473)
.+++.|...++.+..+||+++..+|..+++.|+++...|||+|+++++|+|+|.+++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 012013 408 G 408 (473)
Q Consensus 408 g 408 (473)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 150
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.58 E-value=1.1e-13 Score=145.56 Aligned_cols=287 Identities=19% Similarity=0.267 Sum_probs=185.1
Q ss_pred CCCHHHHHHHHHHhc-CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHH-HHHHHhccC
Q 012013 121 EPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ-QESTKFGAS 198 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~-~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~-~~~~~~~~~ 198 (473)
...|+|.+.++.+.. +.++++.+|+|||||.++.++++. +...-++++++|..+.+...+ .+-++|.+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 348999999998876 457888899999999998877664 223667999999999985544 555678777
Q ss_pred CCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCC---CH--HHHHHHHhh
Q 012013 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG---FE--PQIKKILSQ 273 (473)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~---~~--~~~~~i~~~ 273 (473)
.+..++.++|..... .. +....+|+|+||+++-. ++ ....+++.|.||.|.+.... ++ -.++.|..+
T Consensus 1214 ~G~~~~~l~ge~s~~--lk-l~~~~~vii~tpe~~d~-lq----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q 1285 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLD--LK-LLQKGQVIISTPEQWDL-LQ----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQ 1285 (1674)
T ss_pred cCceEEecCCccccc--hH-HhhhcceEEechhHHHH-Hh----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHH
Confidence 777777777765542 22 23445999999999544 43 56789999999999876321 00 002233222
Q ss_pred -------hh-----------cCCCC-----c---cccccceeeEEecC---chhhHH-----HHHHHHHhHhCCCeEEEE
Q 012013 274 -------VI-----------IGSPD-----L---KANHAIRQHVDIVS---ESQKYN-----KLVKLLEDIMDGSRILIF 319 (473)
Q Consensus 274 -------~~-----------~~~~~-----~---~~~~~i~~~~~~~~---~~~k~~-----~l~~~l~~~~~~~~~lVf 319 (473)
+- ++... + .....+...+..+. ...... ....+.+.....++.+||
T Consensus 1286 ~~k~ir~v~ls~~lana~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf 1365 (1674)
T KOG0951|consen 1286 LEKKIRVVALSSSLANARDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVF 1365 (1674)
T ss_pred HHhheeEEEeehhhccchhhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEE
Confidence 00 00000 0 00011111111111 111111 112233333456689999
Q ss_pred eCChHHHHHHHHHHHh----------------------CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCC
Q 012013 320 MDTKKGCDQITRQLRM----------------------DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGL 377 (473)
Q Consensus 320 ~~~~~~~~~l~~~L~~----------------------~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gi 377 (473)
++++++|..++..|-. ...+..+=|-+++..+...+-..|..|.+.|+|...- ..|+
T Consensus 1366 ~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~ 1444 (1674)
T KOG0951|consen 1366 LPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGT 1444 (1674)
T ss_pred eccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccc
Confidence 9999998877655411 1122222388899999999999999999999998865 7787
Q ss_pred CCCCCCEEE----EcC------CCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHH
Q 012013 378 DVKDVKYVI----NYD------FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 428 (473)
Q Consensus 378 di~~v~~Vi----~~~------~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 428 (473)
-...--+|+ .|| .+..+....|+.|+|.|+ |.|+++....+..++++.
T Consensus 1445 ~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1445 KLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred cccceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHh
Confidence 765433333 222 133489999999999995 789999888887776653
No 151
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.57 E-value=3.9e-14 Score=120.12 Aligned_cols=122 Identities=43% Similarity=0.623 Sum_probs=95.4
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccch
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (473)
+++++.+|||+|||.+++..+....... ...+++|++|++.++.|+.+.+..+... .+.+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 4688999999999999777766665431 2578999999999999999999988765 56677776665554444
Q ss_pred HHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHH
Q 012013 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP 265 (473)
Q Consensus 217 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~ 265 (473)
.......+|+++|++.+...+.........+++||+||+|.+....+..
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHH
Confidence 4445678999999999988877665556678999999999998765444
No 152
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.57 E-value=3e-13 Score=149.87 Aligned_cols=138 Identities=19% Similarity=0.295 Sum_probs=114.5
Q ss_pred hhHHHHHHHH-HhH-hCCC--eEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcC--CCcEEEEec
Q 012013 298 QKYNKLVKLL-EDI-MDGS--RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG--KSPIMTATD 371 (473)
Q Consensus 298 ~k~~~l~~~l-~~~-~~~~--~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g--~~~iLvaT~ 371 (473)
.|...+.+++ ... ..+. ++|||++.....+.+...|...++....++|.++..+|..+++.|.++ ...+++++.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5677777777 333 3455 899999999999999999999988899999999999999999999986 444677779
Q ss_pred ccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHh
Q 012013 372 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 435 (473)
Q Consensus 372 ~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 435 (473)
+.+.|+|+..+++||++|++|++....|.+.|+.|.|++..+.++-......+...+.+....+
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K 835 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKK 835 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997777666555444444444444443
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.57 E-value=6.6e-13 Score=141.87 Aligned_cols=120 Identities=17% Similarity=0.281 Sum_probs=83.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCC-eEEecCCCCHHHHHHHHHHHhcCCC-cEEEEecccccCCCCCC--CCEEEEc
Q 012013 313 GSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAERDWVLSEFKAGKS-PIMTATDVAARGLDVKD--VKYVINY 388 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~ihg~~~~~~r~~~~~~f~~g~~-~iLvaT~~~~~Gidi~~--v~~Vi~~ 388 (473)
++++|||+++.+.++.+++.+...... ....+|..+ +..+++.|+.+.- .++|+|..+++|||+|+ ...||..
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 348999999999999999999876542 445555543 4477888886654 89999999999999997 4667877
Q ss_pred CCCC------------------------------CHHHHHHhhccccCCCCCcEEEEEeccc--cHHHHHHHHHHHHHh
Q 012013 389 DFPG------------------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA--NARFAKELITILEEA 435 (473)
Q Consensus 389 ~~p~------------------------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~--~~~~~~~l~~~l~~~ 435 (473)
..|. -+....|.+||+-|.-.+.-.+++++.. ...+-+.+.+.+...
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~~ 634 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPPF 634 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCCC
Confidence 6653 2445679999999975554444444432 223444555544433
No 154
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.54 E-value=5.8e-12 Score=133.96 Aligned_cols=117 Identities=22% Similarity=0.359 Sum_probs=82.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhC-CCCeEEecCCCCHHHHHHHHHHHh----cCCCcEEEEecccccCCCCCC--CCEE
Q 012013 313 GSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFK----AGKSPIMTATDVAARGLDVKD--VKYV 385 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~r~~~~~~f~----~g~~~iLvaT~~~~~Gidi~~--v~~V 385 (473)
.+.+|||+++.+..+.++..|... ++ .+..++.. .+..+++.|+ .++..||++|..+.+|||+|+ +++|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~-~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRL-MLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCC-cEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 346899999999999999998643 33 34455642 4667887776 467789999999999999996 6788
Q ss_pred EEcCCCC----CH--------------------------HHHHHhhccccCCCCCcEEEEEeccc--cHHHHHHHHHHHH
Q 012013 386 INYDFPG----SL--------------------------EDYVHRIGRTGRAGAKGTAYTFFTAA--NARFAKELITILE 433 (473)
Q Consensus 386 i~~~~p~----s~--------------------------~~~~Qr~GR~gR~g~~g~~~~~~~~~--~~~~~~~l~~~l~ 433 (473)
|...+|. ++ ..+.|.+||.-|...+--++++++.. ...+-+.+++.|.
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sLP 689 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDALP 689 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhCC
Confidence 8777663 11 22459999999986664344455443 4456666666553
No 155
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.53 E-value=1.7e-13 Score=140.19 Aligned_cols=125 Identities=20% Similarity=0.255 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHh----------------------CCCCeEEecCCCCHHHHHH
Q 012013 298 QKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRM----------------------DGWPALSIHGDKSQAERDW 354 (473)
Q Consensus 298 ~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~----------------------~~~~~~~ihg~~~~~~r~~ 354 (473)
.|+-.|+++|+.... +.++|||.++....+.+..+|.. .|.....|.|......|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 455567788877655 56999999999999999999953 1455778999999999999
Q ss_pred HHHHHhcCC----CcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 355 VLSEFKAGK----SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 355 ~~~~f~~g~----~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
+.+.|+.-. .-+||+|.+.+-|||+-.++-||+||..|||+--.|.|=|+-|.|+..-||+|-.-...
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcc
Confidence 999998642 23799999999999999999999999999999999999999999999999887665433
No 156
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.50 E-value=9.9e-14 Score=123.73 Aligned_cols=131 Identities=20% Similarity=0.186 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHhc-------CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 012013 121 EPTPIQAQGWPMALK-------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~-------~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~ 193 (473)
+|+++|.+++..+.. .+.+++.+|||||||.+++..+... .. +++|++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l-~~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILEL-AR----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHH-HC----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcc-cc----------ceeEecCHHHHHHHHHHHHH
Confidence 589999999998884 5889999999999999866444433 21 69999999999999999997
Q ss_pred HhccCCCceEEEEE----------cCccC-ccchHHhhcCCcEEEeChHHHHHHHHcc-----------CccccceeEEe
Q 012013 194 KFGASSKIKSTCIY----------GGVPK-GPQVRDLQKGVEIVIATPGRLIDMLESH-----------NTNLRRVTYLV 251 (473)
Q Consensus 194 ~~~~~~~~~~~~~~----------gg~~~-~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-----------~~~l~~~~~vV 251 (473)
.+............ ..... ...........+++++|...|....... ......+++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 76543211111100 00000 0111112345789999999998775431 12335689999
Q ss_pred ecchhhhhhCC
Q 012013 252 LDEADRMLDMG 262 (473)
Q Consensus 252 vDEah~l~~~~ 262 (473)
+||||++....
T Consensus 152 ~DEaH~~~~~~ 162 (184)
T PF04851_consen 152 IDEAHHYPSDS 162 (184)
T ss_dssp EETGGCTHHHH
T ss_pred EehhhhcCCHH
Confidence 99999876543
No 157
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=3e-11 Score=129.46 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=60.3
Q ss_pred CCCCCCHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 012013 118 GFFEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (473)
Q Consensus 118 ~~~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~ 193 (473)
.|..++|.|.+.+..+. .++++++.+|||+|||++.+.|++.+....+ ..+++++++.|..-..|+.++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHHH
Confidence 35567999998886654 5789999999999999999999998876432 24789999999999999999998
Q ss_pred Hh
Q 012013 194 KF 195 (473)
Q Consensus 194 ~~ 195 (473)
+.
T Consensus 82 ~~ 83 (705)
T TIGR00604 82 KL 83 (705)
T ss_pred hh
Confidence 84
No 158
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.37 E-value=6.3e-11 Score=122.64 Aligned_cols=259 Identities=20% Similarity=0.260 Sum_probs=158.8
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchH
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 217 (473)
-.++.+|+|||||.+ ++..+......+ ..++|+|+.++.|+.+..+.++...-. ++. .|...... .+.
T Consensus 51 V~vVRSpMGTGKTta-Li~wLk~~l~~~------~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~-~i~ 118 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTA-LIRWLKDALKNP------DKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDY-IID 118 (824)
T ss_pred eEEEECCCCCCcHHH-HHHHHHHhccCC------CCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccc-ccc
Confidence 456679999999987 444455543222 678999999999999999999875421 111 11111110 010
Q ss_pred HhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHH------Hhh-------hhcCCCCccc-
Q 012013 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKI------LSQ-------VIIGSPDLKA- 283 (473)
Q Consensus 218 ~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i------~~~-------~~~~~~~~~~- 283 (473)
....+-+++..+.|.++. ...+.++++|||||+-..+..-|.+.+++. +.. +++.++++..
T Consensus 119 --~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 119 --GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred --ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 123567777777776653 224667999999999987765444333322 111 0000000000
Q ss_pred ----------cccceeeE-------------------------------------------------EecCchhhHHHHH
Q 012013 284 ----------NHAIRQHV-------------------------------------------------DIVSESQKYNKLV 304 (473)
Q Consensus 284 ----------~~~i~~~~-------------------------------------------------~~~~~~~k~~~l~ 304 (473)
..++.-.+ ......+......
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH
Confidence 00000000 0000112334455
Q ss_pred HHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCC-
Q 012013 305 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK- 383 (473)
Q Consensus 305 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~- 383 (473)
.++..+..+++|-||+.|...++.+++.......++..+++..+..+ + +. =++.+|+|=|.++..|+++....
T Consensus 274 ~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~~~HF 347 (824)
T PF02399_consen 274 ELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSFEEKHF 347 (824)
T ss_pred HHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEeccchhhc
Confidence 56667777889999999999999999999888888998888665542 2 22 25688999999999999997543
Q ss_pred -EEEEc--CCC--CCHHHHHHhhccccCCCCCcEEEEEeccc
Q 012013 384 -YVINY--DFP--GSLEDYVHRIGRTGRAGAKGTAYTFFTAA 420 (473)
Q Consensus 384 -~Vi~~--~~p--~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 420 (473)
-|+-| ... .++.+..|++||+-.. .+.+.+++++..
T Consensus 348 ~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 348 DSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred eEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 24433 211 2466789999999776 456777777764
No 159
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.36 E-value=4.6e-10 Score=110.59 Aligned_cols=259 Identities=19% Similarity=0.297 Sum_probs=173.0
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhccCC-CceE----EEEEc--------------CccCccchHHhh-----------
Q 012013 171 DGPIVLVLAPTRELAVQIQQESTKFGASS-KIKS----TCIYG--------------GVPKGPQVRDLQ----------- 220 (473)
Q Consensus 171 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~-~~~~----~~~~g--------------g~~~~~~~~~~~----------- 220 (473)
..|+||||+|+|..|.++.+.+.++.... .+.. ..-+| ......+...+.
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 37999999999999999988877665331 0000 00000 000111111111
Q ss_pred --------------cCCcEEEeChHHHHHHHHc------cCccccceeEEeecchhhhhhCCCHHHHHHHHhh-------
Q 012013 221 --------------KGVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ------- 273 (473)
Q Consensus 221 --------------~~~~Iiv~Tp~~l~~~l~~------~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~------- 273 (473)
...|||||+|=-|...+.. +...|+++.++|+|.||.|+-.++. .+..++..
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~-Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWE-HVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHH-HHHHHHHHhccCCCC
Confidence 1379999999887776663 3446899999999999987654432 22222222
Q ss_pred -------------------------------------------------hhcCCCC------ccccccceeeEEecC---
Q 012013 274 -------------------------------------------------VIIGSPD------LKANHAIRQHVDIVS--- 295 (473)
Q Consensus 274 -------------------------------------------------~~~~~~~------~~~~~~i~~~~~~~~--- 295 (473)
+.+.... ......+.|.+...+
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 0000000 011223344444322
Q ss_pred ----chhhHHHHHH-HHHhHh---CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 012013 296 ----ESQKYNKLVK-LLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 367 (473)
Q Consensus 296 ----~~~k~~~l~~-~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iL 367 (473)
...+++...+ +|..+. ....+|||+++--+--.|..+|++.++....+|-..+..+-...-..|..|+.+||
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 2334444333 333333 34589999999999999999999999999999999999999999999999999999
Q ss_pred EEecc--cccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCC------CcEEEEEeccccHHHHHHHHH
Q 012013 368 TATDV--AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA------KGTAYTFFTAANARFAKELIT 430 (473)
Q Consensus 368 vaT~~--~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~------~g~~~~~~~~~~~~~~~~l~~ 430 (473)
+.|.= .=+=..|.++.+||+|.+|..+.-|...+.-...... ...|.++|+.-|.-.+..++-
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 99954 3467789999999999999999988887765544432 579999999988876666553
No 160
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.35 E-value=8e-11 Score=123.29 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=71.2
Q ss_pred EccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH---
Q 012013 142 IAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD--- 218 (473)
Q Consensus 142 ~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~--- 218 (473)
.+.+|||||.+|+-.+ ...+.. +..+|||+|...|..|+.+.+++.... ..+..++++....+..+.
T Consensus 166 ~~~~GSGKTevyl~~i-~~~l~~-------Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 166 QALPGEDWARRLAAAA-AATLRA-------GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred hcCCCCcHHHHHHHHH-HHHHHc-------CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHH
Confidence 3446999999976544 444432 778999999999999999999986531 357778887766544333
Q ss_pred hhc-CCcEEEeChHHHHHHHHccCccccceeEEeecchhh
Q 012013 219 LQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (473)
Q Consensus 219 ~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 257 (473)
+.. ...|+|+|-.. -...+.++.+||+||-|.
T Consensus 236 ~~~G~~~IViGtRSA-------vFaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 236 VLRGQARVVVGTRSA-------VFAPVEDLGLVAIWDDGD 268 (665)
T ss_pred HhCCCCcEEEEccee-------EEeccCCCCEEEEEcCCc
Confidence 233 47899999322 133578899999999994
No 161
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.32 E-value=1.8e-10 Score=122.36 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=67.5
Q ss_pred EEEeCChHHHHHHHHHHHhC----C--CCeEEecCCCCHHHHHHHHHHH----------------------hc----CCC
Q 012013 317 LIFMDTKKGCDQITRQLRMD----G--WPALSIHGDKSQAERDWVLSEF----------------------KA----GKS 364 (473)
Q Consensus 317 lVf~~~~~~~~~l~~~L~~~----~--~~~~~ihg~~~~~~r~~~~~~f----------------------~~----g~~ 364 (473)
||-+.+++.+-.++..|-.. + +.+.++|+......|..+++.. ++ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 77778888887777777432 3 3467889998877777666442 11 356
Q ss_pred cEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCC
Q 012013 365 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK 410 (473)
Q Consensus 365 ~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 410 (473)
.|+|+|++++.|+|+ +.+++|-- |.++...+|++||+.|.+..
T Consensus 840 ~i~v~Tqv~E~g~D~-dfd~~~~~--~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 840 FIVLATPVEEVGRDH-DYDWAIAD--PSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred eEEEEeeeEEEEecc-cCCeeeec--cCcHHHHHHHhhcccccccC
Confidence 799999999999998 46666543 34599999999999997753
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.31 E-value=7e-11 Score=123.05 Aligned_cols=289 Identities=21% Similarity=0.240 Sum_probs=190.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 200 (473)
.++|+-.|.+-.+.-+..-++-+.||-|||+++.+|+.-..+. +..|.+++...-||.--.+++..+...++
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 4566667777777777888999999999999999998777665 56688888888999988999999888899
Q ss_pred ceEEEEEcCccCccchHHhhcCCcEEEeChHHHH-HHHHc------cCccccceeEEeecchhhhhh----------C--
Q 012013 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLES------HNTNLRRVTYLVLDEADRMLD----------M-- 261 (473)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~------~~~~l~~~~~vVvDEah~l~~----------~-- 261 (473)
+.+.+...+........ .-.|||+++|...|- +.+.. ....+..+.+.|+||+|.++= .
T Consensus 150 lsvG~~~~~m~~~ek~~--aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRA--AYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHH--HHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 99998888875533333 345899999976652 22211 112245688999999996431 0
Q ss_pred ----CCHHHHHHHHhh----------------------------------------------------------------
Q 012013 262 ----GFEPQIKKILSQ---------------------------------------------------------------- 273 (473)
Q Consensus 262 ----~~~~~~~~i~~~---------------------------------------------------------------- 273 (473)
.....+..+...
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 001111111110
Q ss_pred -----------------------------------hhcC------------------------CCC--------------
Q 012013 274 -----------------------------------VIIG------------------------SPD-------------- 280 (473)
Q Consensus 274 -----------------------------------~~~~------------------------~~~-------------- 280 (473)
+.+. +.+
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 0000 000
Q ss_pred ----cccccc----ceeeEEecCchhhHHHHHHHHHh-HhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHH
Q 012013 281 ----LKANHA----IRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAE 351 (473)
Q Consensus 281 ----~~~~~~----i~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~ 351 (473)
.+.+.. -...........|+..+++.+.. +..+.|+||-+.+++..+.+.+.|.+.+++..+++..-...+
T Consensus 388 ~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~E 467 (822)
T COG0653 388 DVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHARE 467 (822)
T ss_pred ceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHH
Confidence 000000 00001122345677777665554 445679999999999999999999999999988888766444
Q ss_pred HHHHHHHHhcCCC-cEEEEecccccCCCCCCCC-----------EEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEecc
Q 012013 352 RDWVLSEFKAGKS-PIMTATDVAARGLDVKDVK-----------YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA 419 (473)
Q Consensus 352 r~~~~~~f~~g~~-~iLvaT~~~~~Gidi~~v~-----------~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 419 (473)
-+.+-. +|.. -|-|||+++++|-||.--. +||--..-.|-.--.|-.||+||.|-+|.+-.|++-
T Consensus 468 A~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSl 544 (822)
T COG0653 468 AEIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 544 (822)
T ss_pred HHHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhh
Confidence 333333 3433 4789999999999987433 234333333444445999999999999988877766
Q ss_pred ccH
Q 012013 420 ANA 422 (473)
Q Consensus 420 ~~~ 422 (473)
.|.
T Consensus 545 eD~ 547 (822)
T COG0653 545 EDD 547 (822)
T ss_pred HHH
Confidence 543
No 163
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.29 E-value=4.2e-11 Score=122.62 Aligned_cols=281 Identities=18% Similarity=0.215 Sum_probs=176.8
Q ss_pred HHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc-cCCCceEEE
Q 012013 127 AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG-ASSKIKSTC 205 (473)
Q Consensus 127 ~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~-~~~~~~~~~ 205 (473)
...+..+..+..+++.+.||+|||..+.--+|..++.+. .+...-+.+..|++..+..+.+.+..-. ...+-.+
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns---~g~~~na~v~qprrisaisiaerva~er~e~~g~tv-- 458 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS---NGASFNAVVSQPRRISAISLAERVANERGEEVGETC-- 458 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc---ccccccceeccccccchHHHHHHHHHhhHHhhcccc--
Confidence 344455566777888899999999998888888887753 2234457777899988888877765421 1111111
Q ss_pred EEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCC------------CHHHHHHHHhh
Q 012013 206 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG------------FEPQIKKILSQ 273 (473)
Q Consensus 206 ~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~------------~~~~~~~i~~~ 273 (473)
+...+....-......|.+||.+-+++++++. +..+.++|+||+|..-..+ ..+.+..++..
T Consensus 459 ---gy~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lms 532 (1282)
T KOG0921|consen 459 ---GYNVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMS 532 (1282)
T ss_pred ---cccccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhh
Confidence 11111111111223479999999999998875 4468899999999532111 11122222211
Q ss_pred hhcC---------------------------------------CCCcccc------------ccceeeEE-ecC------
Q 012013 274 VIIG---------------------------------------SPDLKAN------------HAIRQHVD-IVS------ 295 (473)
Q Consensus 274 ~~~~---------------------------------------~~~~~~~------------~~i~~~~~-~~~------ 295 (473)
..++ +.+.... ++-..... .++
T Consensus 533 atIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~ 612 (1282)
T KOG0921|consen 533 ATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNES 612 (1282)
T ss_pred cccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcch
Confidence 0000 0000000 00000000 000
Q ss_pred ---------c----hhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHh-------CCCCeEEecCCCCHHHHHHH
Q 012013 296 ---------E----SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM-------DGWPALSIHGDKSQAERDWV 355 (473)
Q Consensus 296 ---------~----~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-------~~~~~~~ihg~~~~~~r~~~ 355 (473)
+ ....++++..+....-.+-++||.+.+...-.|..+|.. ..+.+...|+.....++.++
T Consensus 613 ~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkv 692 (1282)
T KOG0921|consen 613 TRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKV 692 (1282)
T ss_pred hhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhc
Confidence 0 001111111111111245799999999999999988843 25678899999999999999
Q ss_pred HHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCC------------------CCCHHHHHHhhccccCCCCCcEEEEEe
Q 012013 356 LSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFF 417 (473)
Q Consensus 356 ~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 417 (473)
.+....|..+++++|.+++..+.|.++.+||+.+. ..+....+||.||+||. ++|.|+.+.
T Consensus 693 f~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lc 771 (1282)
T KOG0921|consen 693 FEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLC 771 (1282)
T ss_pred cCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-ccccccccc
Confidence 99999999999999999999999999888885442 23567788999999999 888888776
Q ss_pred cc
Q 012013 418 TA 419 (473)
Q Consensus 418 ~~ 419 (473)
..
T Consensus 772 s~ 773 (1282)
T KOG0921|consen 772 SR 773 (1282)
T ss_pred HH
Confidence 54
No 164
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=1.2e-09 Score=106.55 Aligned_cols=313 Identities=19% Similarity=0.250 Sum_probs=196.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEE-ccCCCCh--hHHhHHHHHHHHhcCCC---------CC--------------CCC
Q 012013 118 GFFEPTPIQAQGWPMALKGRDLIGI-AETGSGK--TLAYLLPAIVHVNAQPF---------LA--------------PGD 171 (473)
Q Consensus 118 ~~~~~~~~Q~~~i~~i~~~~~~l~~-a~TGsGK--T~~~~l~~l~~~~~~~~---------~~--------------~~~ 171 (473)
.-..+|+.|.+.+..+.+-+|++.. ...+.|+ +-+|++.+|.|++.... .. .-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3457899999999999999998765 3334555 56789999988854210 00 113
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCc-e--------EEEEEcCcc--------CccchHHh---------------
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKI-K--------STCIYGGVP--------KGPQVRDL--------------- 219 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~-~--------~~~~~gg~~--------~~~~~~~~--------------- 219 (473)
.|+||||||+|+-|..+.+.+..+.....- + .-.-++|.. .....+.+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 689999999999999999988876322211 0 011112100 00111111
Q ss_pred ----------hcCCcEEEeChHHHHHHHHc------cCccccceeEEeecchhhhhhCCCHHHHHHHHhhhhc-------
Q 012013 220 ----------QKGVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVII------- 276 (473)
Q Consensus 220 ----------~~~~~Iiv~Tp~~l~~~l~~------~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~~~------- 276 (473)
....||+||+|=-|.-.+.. ....|+.+.++|||-||.++..+++.. ..|+..+..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl-~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHL-LHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHH-HHHHHHhhcCcccccC
Confidence 11369999999777666652 233578899999999998876554332 222221000
Q ss_pred -----------------------------------------------------CCCCccc-ccccee---eEEec----C
Q 012013 277 -----------------------------------------------------GSPDLKA-NHAIRQ---HVDIV----S 295 (473)
Q Consensus 277 -----------------------------------------------------~~~~~~~-~~~i~~---~~~~~----~ 295 (473)
....+.. .-.+.| .+.+. .
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 0000000 000111 11111 1
Q ss_pred chhhHHHHHH-HHHhHhC--CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 012013 296 ESQKYNKLVK-LLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 372 (473)
Q Consensus 296 ~~~k~~~l~~-~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~ 372 (473)
...+++.... ++-.+.+ ..-+||+.++--.--.+-.++++..+....||-..+...-...-+.|-.|...||+-|.-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 2233343332 2222222 225899999999888999999988888888887777766667778899999999999965
Q ss_pred c--ccCCCCCCCCEEEEcCCCCCHHHHH---HhhccccCCCC----CcEEEEEeccccHHHHHHHHHH
Q 012013 373 A--ARGLDVKDVKYVINYDFPGSLEDYV---HRIGRTGRAGA----KGTAYTFFTAANARFAKELITI 431 (473)
Q Consensus 373 ~--~~Gidi~~v~~Vi~~~~p~s~~~~~---Qr~GR~gR~g~----~g~~~~~~~~~~~~~~~~l~~~ 431 (473)
+ -+-.+|..|.-||+|.+|.+|.-|. -+.+|+.-.|+ .-.|.++|++-|.--+..++-.
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGt 679 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGT 679 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhH
Confidence 4 4778999999999999999987664 55666544332 2588899999887666555443
No 165
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.22 E-value=1.3e-10 Score=110.68 Aligned_cols=73 Identities=26% Similarity=0.211 Sum_probs=57.4
Q ss_pred CCCHHHHHHH----HHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 121 EPTPIQAQGW----PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 121 ~~~~~Q~~~i----~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
+|+|.|.+.+ ..+..+.++++.||||+|||+++++|++.++...+.. ..+.+++|+++|..+..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 4799999954 4455688999999999999999999999887653210 01347999999999998887777765
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.22 E-value=1.3e-10 Score=110.68 Aligned_cols=73 Identities=26% Similarity=0.211 Sum_probs=57.4
Q ss_pred CCCHHHHHHH----HHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 121 EPTPIQAQGW----PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 121 ~~~~~Q~~~i----~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
+|+|.|.+.+ ..+..+.++++.||||+|||+++++|++.++...+.. ..+.+++|+++|..+..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 4799999954 4455688999999999999999999999887653210 01347999999999998887777765
No 167
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.17 E-value=1.8e-10 Score=111.11 Aligned_cols=131 Identities=19% Similarity=0.197 Sum_probs=79.5
Q ss_pred HHHHHHHHHh-------------cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 012013 125 IQAQGWPMAL-------------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (473)
Q Consensus 125 ~Q~~~i~~i~-------------~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~ 191 (473)
+|.+++.+++ ..+.++++.++|+|||+.++. ++..+.... .......+|||||. .+..||.++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~--~~~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIA-LISYLKNEF--PQRGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHH-HHHHHHHCC--TTSS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhh-hhhhhhhcc--ccccccceeEeecc-chhhhhhhh
Confidence 5777877663 235789999999999988554 444433321 01112359999999 788999999
Q ss_pred HHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHH-----HHHHccCccccceeEEeecchhhhhhC
Q 012013 192 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-----DMLESHNTNLRRVTYLVLDEADRMLDM 261 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~-----~~l~~~~~~l~~~~~vVvDEah~l~~~ 261 (473)
+.++.....+++....+...............+++|+|++.+. .... ...-.++++||+||+|.+-+.
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~--~l~~~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE--DLKQIKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH--HHHTSEEEEEEETTGGGGTTT
T ss_pred hccccccccccccccccccccccccccccccceeeecccccccccccccccc--ccccccceeEEEecccccccc
Confidence 9999865556666655554121222223456799999999988 1111 111134899999999999543
No 168
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.11 E-value=2e-09 Score=117.73 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=81.9
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccch
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (473)
+..+++.-||||||++ ++.+...+... ...|.|+||+.+++|-.|+.+++..+........ ...+.....
T Consensus 274 ~~G~IWHtqGSGKTlT-m~~~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLT-MFKLARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHH-HHHHHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 4689999999999997 33444444443 3478999999999999999999999875533211 122222223
Q ss_pred HHhhcC-CcEEEeChHHHHHHHHccC--ccccceeEEeecchhhhhhCCCHHHHHHHHh
Q 012013 217 RDLQKG-VEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272 (473)
Q Consensus 217 ~~~~~~-~~Iiv~Tp~~l~~~l~~~~--~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~ 272 (473)
+.+... ..|+|+|-++|-..+.... ..-.+=-+||+|||||--.......++..+.
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~~~~~~ 402 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLLKKALK 402 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHHHHHHhc
Confidence 334433 4899999999888775531 1122334699999998544333333344333
No 169
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.04 E-value=1.1e-09 Score=114.03 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHhHhC-C-CeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCC-CcE-EEEeccc
Q 012013 298 QKYNKLVKLLEDIMD-G-SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK-SPI-MTATDVA 373 (473)
Q Consensus 298 ~k~~~l~~~l~~~~~-~-~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~-~~i-LvaT~~~ 373 (473)
.|+..+..+|..... . .+++||++-...++.+...|...++....+.|.|+...|.+.+..|..+. ..| +++..+.
T Consensus 522 ~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag 601 (674)
T KOG1001|consen 522 SKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAG 601 (674)
T ss_pred hhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHh
Confidence 344444444442211 2 28999999999999999999988999999999999999999999999553 334 5677999
Q ss_pred ccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEE
Q 012013 374 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 416 (473)
Q Consensus 374 ~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 416 (473)
..|+|+..+.+|+..|+.||+....|.+-|+.|.|+...+.+.
T Consensus 602 ~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~ 644 (674)
T KOG1001|consen 602 KVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVS 644 (674)
T ss_pred hhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeee
Confidence 9999999999999999999999999999999999998766663
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.04 E-value=3.4e-09 Score=98.40 Aligned_cols=130 Identities=25% Similarity=0.254 Sum_probs=96.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 012013 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (473)
Q Consensus 118 ~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~ 197 (473)
--..|++.|.-++-.+..|+ |+...||-|||++..+|++...+. |..|-|++.+.-||..-++++..+..
T Consensus 74 ~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 74 LGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp TS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHH
Confidence 33478889988887776555 999999999999998888877776 77799999999999999999999999
Q ss_pred CCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHH-HHHcc----C--ccccceeEEeecchhhhh
Q 012013 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID-MLESH----N--TNLRRVTYLVLDEADRML 259 (473)
Q Consensus 198 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~-~l~~~----~--~~l~~~~~vVvDEah~l~ 259 (473)
.+++.+.+++.+.+...... .-.++|+++|...+.- .|... . ...+.+.++||||+|.++
T Consensus 144 ~LGlsv~~~~~~~~~~~r~~--~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 144 FLGLSVGIITSDMSSEERRE--AYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HTT--EEEEETTTEHHHHHH--HHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhhhccccCccccCHHHHHH--HHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999998876422222 2346899999988763 34321 1 124678999999999875
No 171
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.03 E-value=2.8e-09 Score=107.85 Aligned_cols=119 Identities=18% Similarity=0.288 Sum_probs=101.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCC------------------CCeEEecCCCCHHHHHHHHHHHhcCC---CcEEEEec
Q 012013 313 GSRILIFMDTKKGCDQITRQLRMDG------------------WPALSIHGDKSQAERDWVLSEFKAGK---SPIMTATD 371 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~~~------------------~~~~~ihg~~~~~~r~~~~~~f~~g~---~~iLvaT~ 371 (473)
+.++|||.+.....+.+.+.|.+.. ...+.+.|..+..+|++.+++|++.. .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 4589999999999999999996532 23446788889999999999998642 24788999
Q ss_pred ccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHH
Q 012013 372 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 431 (473)
Q Consensus 372 ~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 431 (473)
+..-|||+-..+-+|.||.-|++-.-.|.+-|+-|.|+...|+++-.-.|..+-+++++.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydR 858 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDR 858 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999888887777776654
No 172
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.01 E-value=9e-10 Score=90.91 Aligned_cols=104 Identities=20% Similarity=0.193 Sum_probs=67.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 215 (473)
++-.++-..+|+|||.-.+.-++...... +.++|||.|||.++..+.+.++.. ++++. ....
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~~----~~~~~---t~~~---- 65 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKGL----PVRFH---TNAR---- 65 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTTS----SEEEE---STTS----
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhcC----CcccC---ceee----
Confidence 44567889999999987555555555543 788999999999999888887643 22221 1110
Q ss_pred hHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh
Q 012013 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (473)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l 258 (473)
......+.-|-|+|+..+..++.+ ...+.++++||+||||..
T Consensus 66 ~~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 66 MRTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT 107 (148)
T ss_dssp S----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--
T ss_pred eccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC
Confidence 012234557899999999888776 445789999999999964
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.75 E-value=6.3e-08 Score=103.38 Aligned_cols=38 Identities=21% Similarity=0.062 Sum_probs=33.8
Q ss_pred cCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh
Q 012013 221 KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (473)
Q Consensus 221 ~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l 258 (473)
....|+++||..|...+..+..++..++.|||||||++
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~ 43 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRI 43 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccc
Confidence 34589999999999888888899999999999999975
No 174
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.61 E-value=1.7e-07 Score=86.78 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHhcCCc-EEEEccCCCChhHHhHHHHHHHHhcC-CCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 012013 121 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQ-PFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~-~l~~a~TGsGKT~~~~l~~l~~~~~~-~~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 194 (473)
++++.|.+|+..++.... .++.+|+|+|||.+ +..++..+... .......+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999888 89999999999965 33444444110 000112378899999999999999988887
No 175
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.54 E-value=1.7e-06 Score=77.93 Aligned_cols=129 Identities=21% Similarity=0.379 Sum_probs=86.7
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc---CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEE
Q 012013 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175 (473)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~---~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 175 (473)
.+|+....|++++-.+... .-+++.|.+....+.+ +.+.+.+.-+|.|||.+ ++|++..++.+. ..-|
T Consensus 3 ~~w~p~~~P~wLl~E~e~~--iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lv 73 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIESN--ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLV 73 (229)
T ss_pred CCCCchhChHHHHHHHHcC--ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEE
Confidence 3577777888887666543 3579999999988875 57899999999999988 889999888752 3556
Q ss_pred EEEcCcHHHHHHHHHHHHH-hccCCCceEEEEE--cCccCcc-c---hH----HhhcCCcEEEeChHHHHHHH
Q 012013 176 LVLAPTRELAVQIQQESTK-FGASSKIKSTCIY--GGVPKGP-Q---VR----DLQKGVEIVIATPGRLIDML 237 (473)
Q Consensus 176 lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~--gg~~~~~-~---~~----~~~~~~~Iiv~Tp~~l~~~l 237 (473)
.+++| ++|..|..+.+.. ++.-.+-++..+. -...... . .. .......|+++||+.++.+.
T Consensus 74 rviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 74 RVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred EEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 67777 5799999888875 3322232222221 1111111 0 11 12234579999999987653
No 176
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.52 E-value=3.5e-08 Score=103.60 Aligned_cols=131 Identities=27% Similarity=0.329 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHhc-CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 012013 121 EPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~-~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 199 (473)
...|.|.+.+-.+.. ..++++.+|||+|||++|.+.++..+...| +.++++++|.++|...-.+...+.....
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccC
Confidence 456677776655444 457888999999999999988877766654 6889999999999977776666554445
Q ss_pred CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHc--cCccccceeEEeecchhhhhh
Q 012013 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--HNTNLRRVTYLVLDEADRMLD 260 (473)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~l~~~~~vVvDEah~l~~ 260 (473)
+++++-+.|..... ... -...+++|+||++......+ ....+.+++.+|+||.|.+.+
T Consensus 1001 g~k~ie~tgd~~pd--~~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPD--VKA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred CceeEeccCccCCC--hhh-eecCceEEcccccccCccccccchhhhccccceeecccccccC
Confidence 88888888877654 222 23469999999998776663 344678899999999998754
No 177
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.45 E-value=0.0003 Score=71.82 Aligned_cols=123 Identities=16% Similarity=0.256 Sum_probs=80.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCC-------CeEEecCCCCHHHHHHHHHHHh----cCCCcEEEEe--cccccCCCCC
Q 012013 314 SRILIFMDTKKGCDQITRQLRMDGW-------PALSIHGDKSQAERDWVLSEFK----AGKSPIMTAT--DVAARGLDVK 380 (473)
Q Consensus 314 ~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~ihg~~~~~~r~~~~~~f~----~g~~~iLvaT--~~~~~Gidi~ 380 (473)
+-+++|+++.+-...+.+.++..|+ +.+++-..-+ -+.+++.|. .|.-.||+|. --+++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 4599999999999999998876654 2223332222 345666665 3455688777 7889999998
Q ss_pred C--CCEEEEcCCCCC--------------------------------HHHHHHhhccccCCCCCcEEEEEeccccHHHHH
Q 012013 381 D--VKYVINYDFPGS--------------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 426 (473)
Q Consensus 381 ~--v~~Vi~~~~p~s--------------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 426 (473)
+ .+.||..++|.. +....|-||||-|.-++=.++++++. ++.+
T Consensus 707 D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~---RY~~ 783 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK---RYAR 783 (821)
T ss_pred cccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh---hhcC
Confidence 7 667887776631 11234999999998666666666654 2222
Q ss_pred HHHHHHHHhCCCCCHHHHHhccC
Q 012013 427 ELITILEEAGQKVSPELAAMGRG 449 (473)
Q Consensus 427 ~l~~~l~~~~~~~~~~l~~~~~~ 449 (473)
...+ .+|.|+.+....
T Consensus 784 p~~R-------KLp~WI~~~v~s 799 (821)
T KOG1133|consen 784 PLSR-------KLPKWIRKRVHS 799 (821)
T ss_pred chhh-------hccHHHHhHhcc
Confidence 2222 567777655443
No 178
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.34 E-value=2e-06 Score=75.17 Aligned_cols=105 Identities=20% Similarity=0.272 Sum_probs=71.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCC--CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec--ccccCCCCCC--CCEEE
Q 012013 313 GSRILIFMDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATD--VAARGLDVKD--VKYVI 386 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~~~~--~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~--~~~~Gidi~~--v~~Vi 386 (473)
++.+|||+++...++.+.+.+..... ...++.. +..++..+++.|+.++-.||+|+. .+.+|||+++ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 46899999999999999999976531 1122222 245778899999999999999998 9999999996 67799
Q ss_pred EcCCCC----CH--------------------------HHHHHhhccccCCCCCcEEEEEecc
Q 012013 387 NYDFPG----SL--------------------------EDYVHRIGRTGRAGAKGTAYTFFTA 419 (473)
Q Consensus 387 ~~~~p~----s~--------------------------~~~~Qr~GR~gR~g~~g~~~~~~~~ 419 (473)
....|. ++ ....|.+||+-|..++--++++++.
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 888773 11 1234899999999666555555554
No 179
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.24 E-value=2.1e-05 Score=81.69 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=60.0
Q ss_pred CCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCC--CCCc-----------EEEEEeccccHHHHHHH
Q 012013 362 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA--GAKG-----------TAYTFFTAANARFAKEL 428 (473)
Q Consensus 362 g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~--g~~g-----------~~~~~~~~~~~~~~~~l 428 (473)
...++|++..++-+|+|=|+|=.++-+....|..+=.|-+||..|. .+.| .-.+++..++..++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999982 2333 33456677778888888
Q ss_pred HHHHHHh
Q 012013 429 ITILEEA 435 (473)
Q Consensus 429 ~~~l~~~ 435 (473)
++-+.+.
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 7766553
No 180
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.23 E-value=4.3e-06 Score=83.81 Aligned_cols=65 Identities=29% Similarity=0.315 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHhcCCcE-EEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 012013 121 EPTPIQAQGWPMALKGRDL-IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~-l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~ 193 (473)
.+.+-|++|+.+..+.+++ ++.+|+|+|||.+ +.-++..+..+ +.++||++||.+-+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~T-lvEiI~qlvk~-------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRT-LVEIISQLVKQ-------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceee-HHHHHHHHHHc-------CCeEEEEcCchHHHHHHHHHhc
Confidence 5788899999999988654 5569999999987 44455555543 6889999999998888888543
No 181
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.20 E-value=1.8e-06 Score=77.54 Aligned_cols=63 Identities=24% Similarity=0.231 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHhcCC--cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 012013 121 EPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~--~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~ 191 (473)
++++-|.+++..++... -+++.++.|+|||.+ +..+...+... +.++++++||...+....+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~-------g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA-------GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT-------T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC-------CCeEEEECCcHHHHHHHHHh
Confidence 36889999999997543 466779999999985 44444444442 67899999999888776655
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.11 E-value=1.5e-05 Score=80.56 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=64.6
Q ss_pred HHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 012013 113 EISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (473)
Q Consensus 113 ~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~ 192 (473)
.+...++.++..-|..|+.++++..-.++++|+|+|||.+.. .++.++... ....+||++|+..-+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 455567888999999999999999999999999999998743 344444432 2556999999998889999888
Q ss_pred HHhccCCCceEEEE
Q 012013 193 TKFGASSKIKSTCI 206 (473)
Q Consensus 193 ~~~~~~~~~~~~~~ 206 (473)
.+.+ ++++-+
T Consensus 475 h~tg----LKVvRl 484 (935)
T KOG1802|consen 475 HKTG----LKVVRL 484 (935)
T ss_pred HhcC----ceEeee
Confidence 7754 555443
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.10 E-value=1e-05 Score=72.28 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~L 184 (473)
...++.|..++.+++...-+++.+|.|+|||+.++..++..+... .-.+++|+-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCC
Confidence 345889999999999878888899999999999888888887653 35678888887653
No 184
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.07 E-value=1.4e-05 Score=78.87 Aligned_cols=108 Identities=19% Similarity=0.272 Sum_probs=68.4
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchH
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 217 (473)
-++|.+..|||||++++ .++..+. ....+..++++++...|...+.+.+.+-..
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~-----~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-------------------- 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQ-----NSEEGKKVLYLCGNHPLRNKLREQLAKKYN-------------------- 56 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhh-----ccccCCceEEEEecchHHHHHHHHHhhhcc--------------------
Confidence 46778999999998743 3444441 112367799999999999888887766320
Q ss_pred HhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCC-------CHHHHHHHHhh
Q 012013 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-------FEPQIKKILSQ 273 (473)
Q Consensus 218 ~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~-------~~~~~~~i~~~ 273 (473)
.......+..+..+...+.........+++|||||||++.+.+ ..+++..++..
T Consensus 57 --~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 --PKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --cchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0011233444444444333222345679999999999998832 34667666654
No 185
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.07 E-value=2.2e-05 Score=84.56 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCC--CCc--------EEEEEeccccHHHHHHHHHHH
Q 012013 363 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG--AKG--------TAYTFFTAANARFAKELITIL 432 (473)
Q Consensus 363 ~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g--~~g--------~~~~~~~~~~~~~~~~l~~~l 432 (473)
..++|++.+++.+|+|.|++-++..+....|...-.|.+||..|.- +.| .-.++.+.+...++..|.+-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999999998888999999999999832 112 233556667788899998888
Q ss_pred HHh
Q 012013 433 EEA 435 (473)
Q Consensus 433 ~~~ 435 (473)
++.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 775
No 186
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.06 E-value=2.9e-05 Score=82.12 Aligned_cols=68 Identities=22% Similarity=0.201 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHhcC-CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 120 FEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
..+++.|.+|+..++.. ..+++.+|+|+|||.+ +..++..+... +.++|+++||..-+.++.+.+.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVKR-------GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 46799999999999876 5677889999999976 34444444432 568999999999999998888763
No 187
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.95 E-value=0.00012 Score=68.52 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=91.2
Q ss_pred ccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----------CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCC
Q 012013 102 RDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK----------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171 (473)
Q Consensus 102 ~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~----------~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 171 (473)
-++.||+.+.+. ..+...|.+++-.+-+ +..+++-..||.||--...--++..++..
T Consensus 24 y~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------- 90 (303)
T PF13872_consen 24 YRLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------- 90 (303)
T ss_pred cccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------
Confidence 345677766553 3578899988865532 34577789999999876444455555542
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc---Cccc----
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH---NTNL---- 244 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~---~~~l---- 244 (473)
..++|+++.+..|-....+.++.++.. .+.+..+.. .... .. ..-...|+++|+..|...-... ...+
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~-~~~~-~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK-FKYG-DI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC-cccceechh-hccC-cC--CCCCCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 356999999999999999999988644 333333222 1111 11 1223469999999988764321 1111
Q ss_pred ----cc-eeEEeecchhhhhhCC
Q 012013 245 ----RR-VTYLVLDEADRMLDMG 262 (473)
Q Consensus 245 ----~~-~~~vVvDEah~l~~~~ 262 (473)
.+ =.+|||||||.+.+..
T Consensus 166 ~W~g~dfdgvivfDEcH~akn~~ 188 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHKAKNLS 188 (303)
T ss_pred HHHhcCCCceEEeccchhcCCCC
Confidence 11 2579999999986653
No 188
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.92 E-value=7.6e-05 Score=78.01 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHhc----CCcEEEEccCCCChhHHhHHHHHHHHhcCC-----------C--------C---------
Q 012013 120 FEPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQP-----------F--------L--------- 167 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~-----------~--------~--------- 167 (473)
.+|+|.|..-+..+++ ..+.++..|||+|||++.+-..+.+..... . .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 3789999887776654 578999999999999875544444332111 0 0
Q ss_pred --CC----CCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 012013 168 --AP----GDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (473)
Q Consensus 168 --~~----~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 198 (473)
.+ -..|++.+-.-|..-..|+.+++++....
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 00 11467888888888888999998887544
No 189
>PF13245 AAA_19: Part of AAA domain
Probab=97.87 E-value=7.8e-05 Score=55.57 Aligned_cols=60 Identities=32% Similarity=0.333 Sum_probs=39.9
Q ss_pred HHHHHhc-CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 012013 129 GWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (473)
Q Consensus 129 ~i~~i~~-~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~ 192 (473)
++...++ ..-+++.+|.|||||.+.+ .++..+.... ... +.++|+++||+..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~-~~i~~l~~~~--~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLA-ARIAELLAAR--ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHH-HHHHHHHHHh--cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443333 3445569999999997633 4444444210 112 678999999999999988887
No 190
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.74 E-value=0.00013 Score=77.05 Aligned_cols=138 Identities=21% Similarity=0.152 Sum_probs=83.5
Q ss_pred ccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcE-EEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 102 RDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDL-IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 102 ~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~-l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
....+.+.+.+. -+..++.-|++|+..++..+|. ++.+=+|+|||.+. ..++..+... +++||+.+=
T Consensus 654 ~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI-~~LIkiL~~~-------gkkVLLtsy 721 (1100)
T KOG1805|consen 654 LSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTI-SLLIKILVAL-------GKKVLLTSY 721 (1100)
T ss_pred cccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhH-HHHHHHHHHc-------CCeEEEEeh
Confidence 344556665553 2346889999999999887764 66699999999863 2333333332 788999999
Q ss_pred cHHHHHHHHHHHHHhccCCCceEEEEEcCccCccc-----------------hHHhhcCCcEEEeChHHHHHHHHccCcc
Q 012013 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ-----------------VRDLQKGVEIVIATPGRLIDMLESHNTN 243 (473)
Q Consensus 181 t~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-----------------~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 243 (473)
|..-+..+.-.++.+. +...-+-.......+ .+.....+.||.||---+.+ .-+.
T Consensus 722 ThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~----plf~ 793 (1100)
T KOG1805|consen 722 THSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH----PLFV 793 (1100)
T ss_pred hhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc----hhhh
Confidence 9877677766666553 222211111111111 12223356777777322222 2233
Q ss_pred ccceeEEeecchhhhh
Q 012013 244 LRRVTYLVLDEADRML 259 (473)
Q Consensus 244 l~~~~~vVvDEah~l~ 259 (473)
.+.|++.|+|||-.+.
T Consensus 794 ~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQIL 809 (1100)
T ss_pred ccccCEEEEccccccc
Confidence 4679999999999764
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.69 E-value=0.00024 Score=74.30 Aligned_cols=70 Identities=20% Similarity=0.167 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.++|+.|+..++.++-+++.++.|+|||++ +..++..+..... .....++++++||-.-|..+.+.+...
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 379999999999999999999999999986 3334444332110 001357999999988888777776553
No 192
>PRK10536 hypothetical protein; Provisional
Probab=97.69 E-value=0.00041 Score=63.94 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 012013 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (473)
Q Consensus 118 ~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~ 183 (473)
++...+..|...+.++.+..-+++.+|+|+|||+.++..++..+... .-.+++|.-|+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCC
Confidence 44556888999999998888888889999999998766666555432 1445666666643
No 193
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.68 E-value=0.00023 Score=74.65 Aligned_cols=69 Identities=22% Similarity=0.194 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.++|++|+...+.++-+++.+++|+|||++ +..++..+... .......+++++||..-|..+.+.+...
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~---~~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQL---ADGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHh---cCCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 589999999999999999999999999986 33344433321 1112457899999998888888777653
No 194
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.64 E-value=0.00025 Score=76.26 Aligned_cols=66 Identities=23% Similarity=0.129 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q 012013 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 190 (473)
-..+++.|++|+..+..++-+++.++.|+|||++ +-.++..+... +....+++++||-.-|..+.+
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHc-----CCCceEEEEeCchHHHHHHHH
Confidence 3579999999999999888899999999999985 33344433332 011568889999877764433
No 195
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.59 E-value=0.0012 Score=72.65 Aligned_cols=61 Identities=25% Similarity=0.129 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHhcCCc-EEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 012013 120 FEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~-~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~ 188 (473)
..+++-|.+|+..++.+++ +++.+..|+|||++ +-.+...+... +.+|+.++||-.-|..+
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~-------G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA-------GYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEecCcHHHHHHH
Confidence 4689999999999998654 67789999999985 33343333322 67899999997655443
No 196
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.51 E-value=0.0043 Score=68.80 Aligned_cols=61 Identities=20% Similarity=0.052 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHhc-CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 012013 120 FEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~-~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~ 188 (473)
..+++-|.+++..+.. ++-+++.++.|+|||++ +-++...+... +..|+.++||-.-|..+
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~-------G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAA-------GYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEEcCcHHHHHHH
Confidence 4799999999998865 45678889999999985 43444443332 67899999997665544
No 197
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.43 E-value=0.00074 Score=72.96 Aligned_cols=62 Identities=19% Similarity=0.123 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHhcC-CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHH
Q 012013 120 FEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~ 189 (473)
..+++-|++|+..++.+ +-+++.++.|+|||.+ +-.++..+... +..+++++||-.-|..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~~-------g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEAA-------GYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHhC-------CCeEEEEeCcHHHHHHHH
Confidence 46899999999998874 5678889999999975 33333333321 678999999976655443
No 198
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.38 E-value=0.00076 Score=63.01 Aligned_cols=81 Identities=22% Similarity=0.412 Sum_probs=61.2
Q ss_pred HHHHHHhcCCCcEEEEecccccCCCCCC--------CCEEEEcCCCCCHHHHHHhhccccCCCCC-cEEEEEeccc---c
Q 012013 354 WVLSEFKAGKSPIMTATDVAARGLDVKD--------VKYVINYDFPGSLEDYVHRIGRTGRAGAK-GTAYTFFTAA---N 421 (473)
Q Consensus 354 ~~~~~f~~g~~~iLvaT~~~~~Gidi~~--------v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~-g~~~~~~~~~---~ 421 (473)
...+.|.+|+..|+|.+++++.||.+.. -++-|.+.+|||.+..+|..||++|.||. .-.|.++..+ +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 3456899999999999999999998763 34567889999999999999999999985 4445555443 4
Q ss_pred HHHHHHHHHHHHH
Q 012013 422 ARFAKELITILEE 434 (473)
Q Consensus 422 ~~~~~~l~~~l~~ 434 (473)
.+++..+.+-|+.
T Consensus 132 ~Rfas~va~rL~s 144 (278)
T PF13871_consen 132 RRFASTVARRLES 144 (278)
T ss_pred HHHHHHHHHHHhh
Confidence 4555554444443
No 199
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.38 E-value=0.0018 Score=54.57 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHhcCC-CcEEEEecccccCCCCCC--CCEEEEcCCCC----C-------------------------
Q 012013 346 DKSQAERDWVLSEFKAGK-SPIMTATDVAARGLDVKD--VKYVINYDFPG----S------------------------- 393 (473)
Q Consensus 346 ~~~~~~r~~~~~~f~~g~-~~iLvaT~~~~~Gidi~~--v~~Vi~~~~p~----s------------------------- 393 (473)
..+..+...+++.|+... ..||++|.-+++|||+|+ ++.||....|. +
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLP 109 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHH
Confidence 344546788899998654 379999977999999997 56788777653 1
Q ss_pred --HHHHHHhhccccCCCCCcEEEEEe
Q 012013 394 --LEDYVHRIGRTGRAGAKGTAYTFF 417 (473)
Q Consensus 394 --~~~~~Qr~GR~gR~g~~g~~~~~~ 417 (473)
.....|.+||+-|...+--+++++
T Consensus 110 ~a~~~l~Qa~GR~iR~~~D~g~i~l~ 135 (141)
T smart00492 110 DAMRTLAQCVGRLIRGANDYGVVVIA 135 (141)
T ss_pred HHHHHHHHHhCccccCcCceEEEEEE
Confidence 122448899999986654344444
No 200
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.33 E-value=0.00062 Score=65.93 Aligned_cols=123 Identities=20% Similarity=0.082 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCc
Q 012013 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (473)
Q Consensus 122 ~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~ 201 (473)
+++-|.+++.. ....++|.|..|||||.+.+.-++..+.... ....++|++++|+..|..+.+.+.........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 47789999988 6788999999999999985554444444321 23566999999999999999998885432110
Q ss_pred eEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccc--cceeEEeecchh
Q 012013 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNL--RRVTYLVLDEAD 256 (473)
Q Consensus 202 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l--~~~~~vVvDEah 256 (473)
.. ............-..+.|.|-+.+...+.+..... -.-.+-++|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 00000011112235788999887765433221111 123456667766
No 201
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.30 E-value=0.0018 Score=54.75 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCC---cEEEEecc--cccCCCCCC--CCEEEEcCCCC----C--------------------------
Q 012013 351 ERDWVLSEFKAGKS---PIMTATDV--AARGLDVKD--VKYVINYDFPG----S-------------------------- 393 (473)
Q Consensus 351 ~r~~~~~~f~~g~~---~iLvaT~~--~~~Gidi~~--v~~Vi~~~~p~----s-------------------------- 393 (473)
+...+++.|++... .||+++.- +++|||+|+ ++.||....|. +
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44678888887543 69999876 999999997 56788777663 1
Q ss_pred -HHHHHHhhccccCCCCCcEEEEEec
Q 012013 394 -LEDYVHRIGRTGRAGAKGTAYTFFT 418 (473)
Q Consensus 394 -~~~~~Qr~GR~gR~g~~g~~~~~~~ 418 (473)
.....|.+||+-|...+--++++++
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEe
Confidence 1223489999999866644555543
No 202
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.26 E-value=2.8e-05 Score=80.84 Aligned_cols=78 Identities=26% Similarity=0.379 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhc---CCCcEEEEeccc
Q 012013 298 QKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA---GKSPIMTATDVA 373 (473)
Q Consensus 298 ~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~---g~~~iLvaT~~~ 373 (473)
.|+..|...++.... +++|+||..-....+.+.+++...+ ....+.|.....+|+..+++|+. .+..+|.+|.+.
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 455556666665544 5599999999999999999999888 88999999999999999999993 356789999876
Q ss_pred ccC
Q 012013 374 ARG 376 (473)
Q Consensus 374 ~~G 376 (473)
+.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 654
No 203
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.26 E-value=0.0037 Score=62.00 Aligned_cols=72 Identities=15% Similarity=0.033 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 012013 119 FFEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 194 (473)
|...+|-|.+=...+. .+.++++.+|+|+|||.+.+..++.+....| ....++++.+-|..-.+...++++.
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p----~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP----DEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC----cccceEEEecCcchHHHHHHHHHHH
Confidence 4556777765554433 3568999999999999885555555555433 2355677776665444444444443
No 204
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.11 E-value=0.0011 Score=61.69 Aligned_cols=53 Identities=26% Similarity=0.457 Sum_probs=39.7
Q ss_pred CCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCc-EEEEccCCCChhHHhHHHHHHHHhcC
Q 012013 92 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQ 164 (473)
Q Consensus 92 ~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~-~l~~a~TGsGKT~~~~l~~l~~~~~~ 164 (473)
.-+|..+.+|+++++|+-+.+.+. ..+. +++.+|||||||++ +..++.+++..
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~-------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAE-------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHh-------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 357888999999999988766322 2233 56679999999987 77788888764
No 205
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.05 E-value=0.001 Score=55.38 Aligned_cols=18 Identities=39% Similarity=0.348 Sum_probs=12.3
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
.+.+++.|++|+|||.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 456888999999999863
No 206
>PRK04296 thymidine kinase; Provisional
Probab=97.03 E-value=0.00074 Score=60.34 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=23.5
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
-.++.+|+|+|||+.++- ++..+... +.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~-~~~~~~~~-------g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ-RAYNYEER-------GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHH-HHHHHHHc-------CCeEEEEec
Confidence 467889999999976443 33333321 667888866
No 207
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.97 E-value=0.0019 Score=70.39 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=63.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCC
Q 012013 314 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 393 (473)
Q Consensus 314 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s 393 (473)
.++|||+.--...+.+...+.-.++....--+ .++-...+..|++ -...|+-+...+.|+|+-.+.||+..++--+
T Consensus 1222 ekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN 1297 (1394)
T KOG0298|consen 1222 EKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPILN 1297 (1394)
T ss_pred ceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccccC
Confidence 36777777666666666666555444333222 1223334555554 2335666778888888888888888888888
Q ss_pred HHHHHHhhccccCCCCCcEEE
Q 012013 394 LEDYVHRIGRTGRAGAKGTAY 414 (473)
Q Consensus 394 ~~~~~Qr~GR~gR~g~~g~~~ 414 (473)
+..-.|.+||+.|.|++-..+
T Consensus 1298 ~~~E~QAigRvhRiGQ~~pT~ 1318 (1394)
T KOG0298|consen 1298 PGDEAQAIGRVHRIGQKRPTF 1318 (1394)
T ss_pred chHHHhhhhhhhhcccccchh
Confidence 888888888888888874433
No 208
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.80 E-value=0.0093 Score=50.05 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
++.+++.+|+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56899999999999974
No 209
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.79 E-value=0.0026 Score=58.76 Aligned_cols=85 Identities=28% Similarity=0.382 Sum_probs=63.0
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCc-cCccchHHhhc-CCcEEEeChHHHHHHHHccCcccccee
Q 012013 171 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV-PKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVT 248 (473)
Q Consensus 171 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 248 (473)
..|.+||||.+-.-|..+...++.|... ...+.-++.-. ...++...+.. ...|.|+||++|..+++.+...++++.
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 4789999999877788888888877311 12222222222 34455666653 689999999999999999999999999
Q ss_pred EEeecchh
Q 012013 249 YLVLDEAD 256 (473)
Q Consensus 249 ~vVvDEah 256 (473)
+||||--|
T Consensus 204 ~ivlD~s~ 211 (252)
T PF14617_consen 204 RIVLDWSY 211 (252)
T ss_pred EEEEcCCc
Confidence 99999876
No 210
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.78 E-value=0.0058 Score=65.59 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
.+++-|++++.+. ...++|.|..|||||.+.. .-+.+++... .....++|+|+.|+..|.++.+.+.+..
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~-~Ria~Li~~~---~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVIT-NKIAHLIRGC---GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHH-HHHHHHHHhc---CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4789999998763 4678899999999998844 4444444321 1124569999999999999999988764
No 211
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.74 E-value=0.036 Score=66.14 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 012013 121 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~ 191 (473)
.+++-|.+++..++.. +-.++.++.|+|||.+ +-.++..+... +..|++++||-.-|..+.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~~-------G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASEQ-------GYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHhc-------CCeEEEEeCCHHHHHHHHHH
Confidence 5889999999998875 5677889999999975 33344333332 67899999998766665554
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.1 Score=51.44 Aligned_cols=142 Identities=18% Similarity=0.248 Sum_probs=68.6
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEE-cCc-H-HHHHHHHHHHHHhccCCCceEEEEEcCccCc
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL-APT-R-ELAVQIQQESTKFGASSKIKSTCIYGGVPKG 213 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil-~Pt-~-~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 213 (473)
+.+++++|||+|||+....-+. .+... +.++.++ +.+ | ..+.|+...... .++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~~-------GkkVglI~aDt~RiaAvEQLk~yae~----lgi------------ 297 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHGK-------KKTVGFITTDHSRIGTVQQLQDYVKT----IGF------------ 297 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHHc-------CCcEEEEecCCcchHHHHHHHHHhhh----cCC------------
Confidence 4678889999999986443332 22221 4445444 423 3 233444432222 222
Q ss_pred cchHHhhcCCcEE-EeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhhhcCCCCccccccceeeEE
Q 012013 214 PQVRDLQKGVEIV-IATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVD 292 (473)
Q Consensus 214 ~~~~~~~~~~~Ii-v~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~ 292 (473)
.++ +.+|..+.+.+..... ..++++|++|-+=+.... ...+..+...+....+. ..+.
T Consensus 298 ----------pv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~Pd--------evlL 356 (436)
T PRK11889 298 ----------EVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPD--------YICL 356 (436)
T ss_pred ----------cEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcCCC--------eEEE
Confidence 222 3466666665543211 125789999988664321 22333333222111111 1233
Q ss_pred ecCchhhHHHHHHHHHhHhC-CCeEEEEeCCh
Q 012013 293 IVSESQKYNKLVKLLEDIMD-GSRILIFMDTK 323 (473)
Q Consensus 293 ~~~~~~k~~~l~~~l~~~~~-~~~~lVf~~~~ 323 (473)
+.+...+.+.+.++++.... +-.-|||+.-.
T Consensus 357 VLsATtk~~d~~~i~~~F~~~~idglI~TKLD 388 (436)
T PRK11889 357 TLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 388 (436)
T ss_pred EECCccChHHHHHHHHHhcCCCCCEEEEEccc
Confidence 34444555555555555443 22457776543
No 213
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.12 Score=51.36 Aligned_cols=146 Identities=14% Similarity=0.109 Sum_probs=71.5
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEE-EEEcCc-HHHHHHHHHHHHHhccCCCceEEEEEcCccCcc
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV-LVLAPT-RELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v-lil~Pt-~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 214 (473)
+.+++++|||+|||++..-.+....... ...+.+| ++-+.+ |.-+. ++++.++...++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~----~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~---------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINS----DDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVK---------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh----ccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceE----------
Confidence 4578889999999987432222222110 0013334 444444 33332 224455444443321
Q ss_pred chHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhhhcCCCCccccccceeeEEec
Q 012013 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIV 294 (473)
Q Consensus 215 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~ 294 (473)
++-++..+...+.. +.++++||+|++.++... ..++.++...+....+ ..+.+.+.
T Consensus 238 -----------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~~-------~~e~~LVl 293 (388)
T PRK12723 238 -----------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKD--FMKLAEMKELLNACGR-------DAEFHLAV 293 (388)
T ss_pred -----------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcCC-------CCeEEEEE
Confidence 12234444444433 356899999999987521 2223333222111111 11334455
Q ss_pred CchhhHHHHHHHHHhHhCC-CeEEEEeCCh
Q 012013 295 SESQKYNKLVKLLEDIMDG-SRILIFMDTK 323 (473)
Q Consensus 295 ~~~~k~~~l~~~l~~~~~~-~~~lVf~~~~ 323 (473)
+...+.+.+.+++.....- -.-+||+.-.
T Consensus 294 sat~~~~~~~~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 294 SSTTKTSDVKEIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred cCCCCHHHHHHHHHHhcCCCCCEEEEEecc
Confidence 5556666666776665432 2457776543
No 214
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.64 E-value=0.0045 Score=61.33 Aligned_cols=60 Identities=27% Similarity=0.331 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHH------hcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 012013 121 EPTPIQAQGWPMA------LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (473)
Q Consensus 121 ~~~~~Q~~~i~~i------~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~ 188 (473)
+|++-|++++..+ .++..+++.++-|+|||+. +-.+...... .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc------ccceEEEecchHHHHHhc
Confidence 3677899998888 5677899999999999984 3344443332 267899999997655444
No 215
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.58 E-value=0.0098 Score=64.54 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
..|+|-|++++... ...++|.|..|||||.+. ..-+.++.... .....++|+|+.|+..|.++.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L-~~Ria~Li~~~---~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVL-THRIAWLLSVE---NASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHH-HHHHHHHHHcC---CCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 35899999998653 468999999999999884 44444554321 1124569999999999999999998864
No 216
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.57 E-value=0.0086 Score=64.00 Aligned_cols=72 Identities=22% Similarity=0.167 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
-..+++-|++|+..- ..+++|.|..|||||.+. +.-+.++.... ......+|+++.|+..|..+.+.+.+..
T Consensus 194 ~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl-~~r~ayLl~~~---~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 194 SSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVL-VARAGWLLARG---QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHH-HHHHHHHHHhC---CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 346899999998643 356889999999999884 34444444321 1124579999999999999999887654
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.50 E-value=0.0028 Score=52.82 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=24.5
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~L 184 (473)
+..+++.+|+|+|||.... .+....... ...++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~--~l~~~~~~~------~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR--ALARELGPP------GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHH--HHHhccCCC------CCCEEEECCEEcc
Confidence 4578899999999998532 222222211 1247777766543
No 218
>PRK08181 transposase; Validated
Probab=96.50 E-value=0.016 Score=54.65 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=34.0
Q ss_pred CHHHHHHH----HHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 012013 123 TPIQAQGW----PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (473)
Q Consensus 123 ~~~Q~~~i----~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~ 188 (473)
.+.|..++ .++..++++++.+|+|+|||..+. .+...+... +..|+++ +..+|..++
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~~-------g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIEN-------GWRVLFT-RTTDLVQKL 149 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHHc-------CCceeee-eHHHHHHHH
Confidence 44555554 244567899999999999997533 223333322 4556655 445565554
No 219
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.48 E-value=0.01 Score=64.34 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
..|+|-|++++... ...++|.|..|||||.+.. .-+.++.... .-....+|+|+-|+..|.++.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~-~Ria~Li~~~---~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLV-HRIAWLMQVE---NASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHH-HHHHHHHHcC---CCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 35899999998753 4689999999999998844 4444544321 1124569999999999999999998864
No 220
>PHA02533 17 large terminase protein; Provisional
Probab=96.44 E-value=0.014 Score=60.42 Aligned_cols=124 Identities=13% Similarity=0.044 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 199 (473)
..|.|+|+..+..+..++-.++..+=-.|||.+....++..+...+ +..+++++|+..-|..+.+.++......
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~------~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK------DKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC------CCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 3689999999988766666678888899999876654554444322 5689999999999988888777543322
Q ss_pred C--ceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhh
Q 012013 200 K--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (473)
Q Consensus 200 ~--~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~ 260 (473)
+ +....... ....-.+..+..|.+.|.. .+...=.+++++|+||+|.+.+
T Consensus 132 P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 132 PDFLQPGIVEW----NKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred HHHhhcceeec----CccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC
Confidence 1 01000000 0011112345556555421 1111112467899999997644
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.27 E-value=0.036 Score=51.37 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=25.4
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~ 186 (473)
..+++.+++|+|||..+. .+...+... +..++++ +..+|..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~-------g~~v~~i-t~~~l~~ 140 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLR-------GKSVLII-TVADIMS 140 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhc-------CCeEEEE-EHHHHHH
Confidence 468999999999997533 344444432 4566665 3334443
No 222
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.26 E-value=0.028 Score=60.49 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=71.5
Q ss_pred hhhHH-HHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 012013 297 SQKYN-KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 371 (473)
Q Consensus 297 ~~k~~-~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~ 371 (473)
..|.. .+..++.....+.+++|.+||+.-|...++.+++ .++++..+||+++..+|..+++...+|+.+|+|+|.
T Consensus 293 SGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 372 (681)
T PRK10917 293 SGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTH 372 (681)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchH
Confidence 34433 3344455555667999999999988877777653 468899999999999999999999999999999994
Q ss_pred -ccccCCCCCCCCEEE
Q 012013 372 -VAARGLDVKDVKYVI 386 (473)
Q Consensus 372 -~~~~Gidi~~v~~Vi 386 (473)
.+...+.++++.+||
T Consensus 373 ~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 373 ALIQDDVEFHNLGLVI 388 (681)
T ss_pred HHhcccchhcccceEE
Confidence 566677888888877
No 223
>PRK06526 transposase; Provisional
Probab=96.26 E-value=0.0048 Score=57.71 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=19.4
Q ss_pred HHHhcCCcEEEEccCCCChhHHhH
Q 012013 131 PMALKGRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 131 ~~i~~~~~~l~~a~TGsGKT~~~~ 154 (473)
.++..+.++++++|+|+|||..+.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHH
Confidence 445567899999999999997644
No 224
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.19 E-value=0.053 Score=48.05 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=33.1
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
+++.+|+|+|||...+--+...+.. +..+++++. .+...++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--------g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--------GEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--------CCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 6789999999997644434433322 566888765 456677777777664
No 225
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.14 E-value=0.14 Score=51.60 Aligned_cols=166 Identities=20% Similarity=0.206 Sum_probs=76.3
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHH-hcCCCCCCCCCCEEEEE-cCc-HHHHHHHHHHHHHhccCCCceEEEEEcCccC
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHV-NAQPFLAPGDGPIVLVL-APT-RELAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~-~~~~~~~~~~~~~vlil-~Pt-~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~ 212 (473)
++.+++++|||+|||++..-.+.... ... +.+|.++ +.+ +.-+ .+.+..|....++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-------g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~--------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-------KKKVALITLDTYRIGA---VEQLKTYAKIMGIPV--------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-------CCeEEEEECCccHHHH---HHHHHHHHHHhCCce---------
Confidence 45678889999999986443333222 121 3344444 433 3222 233333332222221
Q ss_pred ccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhh-CCCHHHHHHHHhhhhcCCCCccccccceeeE
Q 012013 213 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQVIIGSPDLKANHAIRQHV 291 (473)
Q Consensus 213 ~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~ 291 (473)
..+.++..+...+.. +.++++||||.+-+... ......+..++.. . . .. ...+
T Consensus 282 ------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~-----~---~-~~-~~~~ 335 (424)
T PRK05703 282 ------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEF-----S---G-EP-IDVY 335 (424)
T ss_pred ------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhc-----c---C-CC-CeEE
Confidence 122344445555443 34689999999865321 1112233333320 0 0 11 1223
Q ss_pred EecCchhhHHHHHHHHHhHhCCC-eEEEEeCChHH--HHHHHHHHHhCCCCeEEecCC
Q 012013 292 DIVSESQKYNKLVKLLEDIMDGS-RILIFMDTKKG--CDQITRQLRMDGWPALSIHGD 346 (473)
Q Consensus 292 ~~~~~~~k~~~l~~~l~~~~~~~-~~lVf~~~~~~--~~~l~~~L~~~~~~~~~ihg~ 346 (473)
.+++...+...+.+++.....-. .-+||+.-.+. .-.+...+...+.++..+..+
T Consensus 336 LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlDet~~~G~i~~~~~~~~lPv~yit~G 393 (424)
T PRK05703 336 LVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNG 393 (424)
T ss_pred EEEECCCCHHHHHHHHHHhCCCCCCEEEEecccccccccHHHHHHHHHCCCEEEEeCC
Confidence 33444455555555555543322 34677654332 123344444556666655443
No 226
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.12 E-value=0.035 Score=59.92 Aligned_cols=69 Identities=17% Similarity=0.086 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 122 ~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
++|-|.+++.. ...+++|.|..|||||.+.+ .-+.++.... .....++|+|+.|+..|.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~-~ri~~ll~~~---~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVIT-NKIAYLIQNC---GYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHH-HHHHHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68889998865 35689999999999998844 4444444321 1124679999999999999999998754
No 227
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.09 E-value=0.017 Score=55.41 Aligned_cols=64 Identities=20% Similarity=0.161 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHhcCC--cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 117 AGFFEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 117 ~~~~~~~~~Q~~~i~~i~~~~--~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
.|+......|.-|+..++.-. =+.+.++-|+|||+.++.+.+......+ .-.++||.=|+..+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-----~y~KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-----RYRKIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-----hhceEEEecCCcCcc
Confidence 466666778999999988754 3566799999999988888888877643 245677777876655
No 228
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.00 E-value=0.023 Score=53.19 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=34.5
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 194 (473)
.++.++++.+|+|+|||..+. ++...+... +..|++ +++.+|+.++...+..
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~-Ai~~~l~~~-------g~sv~f-~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAI-AIGNELLKA-------GISVLF-ITAPDLLSKLKAAFDE 154 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHH-HHHHHHHHc-------CCeEEE-EEHHHHHHHHHHHHhc
Confidence 367899999999999998633 333333321 555555 4777888777665543
No 229
>PRK06921 hypothetical protein; Provisional
Probab=95.96 E-value=0.07 Score=50.33 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=26.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHH
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 187 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q 187 (473)
.+..+++.+++|+|||..+ ..+...+... .+..|+++. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~------~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK------KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh------cCceEEEEE-HHHHHHH
Confidence 3567999999999999752 3334444331 145566654 3445444
No 230
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.90 E-value=0.02 Score=57.33 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHhcCCcEEEEccCCCChhHHhH
Q 012013 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 122 ~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~ 154 (473)
+.......+..+..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 344455666777789999999999999998643
No 231
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.90 E-value=0.044 Score=58.53 Aligned_cols=91 Identities=20% Similarity=0.239 Sum_probs=72.0
Q ss_pred chhhHH-HHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 012013 296 ESQKYN-KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 370 (473)
Q Consensus 296 ~~~k~~-~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT 370 (473)
...|.. .++.++.....+.+++|.+||+.-|..+++.+++ .++++..+||+++..+|..+++...+|+.+|+|+|
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT 345 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGT 345 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEec
Confidence 344543 3444555555667999999999998888777654 47889999999999999999999999999999999
Q ss_pred -cccccCCCCCCCCEEE
Q 012013 371 -DVAARGLDVKDVKYVI 386 (473)
Q Consensus 371 -~~~~~Gidi~~v~~Vi 386 (473)
..+...+++.++.+||
T Consensus 346 ~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 346 HALIQEKVEFKRLALVI 362 (630)
T ss_pred HHHHhccccccccceEE
Confidence 4556677888888777
No 232
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.85 E-value=0.093 Score=53.62 Aligned_cols=91 Identities=23% Similarity=0.196 Sum_probs=58.8
Q ss_pred CCCCHH-HHHHHHHCCCCCCCH----HHHHHHHHHhc--CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEE
Q 012013 104 VGFPDY-VMQEISKAGFFEPTP----IQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (473)
Q Consensus 104 ~~l~~~-~~~~l~~~~~~~~~~----~Q~~~i~~i~~--~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 176 (473)
....++ +...|++..-.+++. +|.+-=..+.. ++-+|+++..|||||.+++--+...+.... ..-.+..||
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R--~~l~~k~vl 264 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYR--GPLQAKPVL 264 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccc--cccccCceE
Confidence 334444 445677665555554 35555555554 456788899999999987665554444432 112233499
Q ss_pred EEcCcHHHHHHHHHHHHHhc
Q 012013 177 VLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 177 il~Pt~~La~q~~~~~~~~~ 196 (473)
|+.|.+.++.-+...+=+++
T Consensus 265 vl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred EEcCcHHHHHHHHHhchhhc
Confidence 99999999888777776665
No 233
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.80 E-value=0.064 Score=45.97 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=22.0
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 012013 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~ 182 (473)
+++.+++|+|||..+.. ++..+.. .+..++++....
T Consensus 2 ~~i~G~~G~GKT~l~~~-i~~~~~~-------~~~~v~~~~~e~ 37 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ-LALNIAT-------KGGKVVYVDIEE 37 (165)
T ss_pred eeEeCCCCCCHHHHHHH-HHHHHHh-------cCCEEEEEECCc
Confidence 57899999999975332 3233222 145577766543
No 234
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.18 Score=47.74 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=19.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhc
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
+..++++++|||||||+.+ -.|+.++.
T Consensus 96 ~KSNILLiGPTGsGKTlLA--qTLAk~Ln 122 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA--QTLAKILN 122 (408)
T ss_pred eeccEEEECCCCCcHHHHH--HHHHHHhC
Confidence 3457899999999999843 35556555
No 235
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.74 E-value=0.04 Score=54.06 Aligned_cols=166 Identities=17% Similarity=0.225 Sum_probs=88.7
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 215 (473)
++.+.+++|||.|||++..=.+..+.+. .+.....||...|--.+ .+++++.|++-.++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-----~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-----KKKKKVAIITTDTYRIG--AVEQLKTYADIMGVPL------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-----ccCcceEEEEeccchhh--HHHHHHHHHHHhCCce------------
Confidence 6778899999999998632222222211 12245567766664444 3556666665544433
Q ss_pred hHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhh-hCCCHHHHHHHHhhhhcCCCCccccccceeeEEec
Q 012013 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQVIIGSPDLKANHAIRQHVDIV 294 (473)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~ 294 (473)
.++-+|.-|..-+.. +.++++|.||=+=+-. |.....+++.++.. . .. ...+.+.
T Consensus 264 ---------~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~---~-------~~-i~~~Lvl 319 (407)
T COG1419 264 ---------EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDV---S-------HS-IEVYLVL 319 (407)
T ss_pred ---------EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhc---c-------cc-ceEEEEE
Confidence 344455555544432 5567888888775421 11122233333221 1 11 2334456
Q ss_pred CchhhHHHHHHHHHhHhCCC-eEEEEeCChHH--HHHHHHHHHhCCCCeEEec
Q 012013 295 SESQKYNKLVKLLEDIMDGS-RILIFMDTKKG--CDQITRQLRMDGWPALSIH 344 (473)
Q Consensus 295 ~~~~k~~~l~~~l~~~~~~~-~~lVf~~~~~~--~~~l~~~L~~~~~~~~~ih 344 (473)
+...|...+.+++.....-. ..+||+.-.+. .-.+...+...+.++..+.
T Consensus 320 sat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT 372 (407)
T COG1419 320 SATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVT 372 (407)
T ss_pred ecCcchHHHHHHHHHhccCCcceeEEEcccccCchhHHHHHHHHhCCCeEEEe
Confidence 67788888888888866533 67888764321 1223333444555555543
No 236
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.73 E-value=0.016 Score=52.30 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.9
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
++++.+|+|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6899999999999743
No 237
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.72 E-value=0.015 Score=58.93 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=56.1
Q ss_pred EEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH-----HhccCCCceEEEEEcCccCc--
Q 012013 141 GIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-----KFGASSKIKSTCIYGGVPKG-- 213 (473)
Q Consensus 141 ~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~-----~~~~~~~~~~~~~~gg~~~~-- 213 (473)
..++||||||++..-.++.. .... -...|+.|............+. +|.-. -...+++....
T Consensus 2 f~matgsgkt~~ma~lil~~-y~kg------yr~flffvnq~nilekt~~nftd~~s~kylf~----e~i~~~d~~i~ik 70 (812)
T COG3421 2 FEMATGSGKTLVMAGLILEC-YKKG------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFS----ENININDENIEIK 70 (812)
T ss_pred cccccCCChhhHHHHHHHHH-HHhc------hhhEEEEecchhHHHHHHhhcccchhhhHhhh----hhhhcCCceeeee
Confidence 35789999999754444443 3321 3446777665554443332221 11100 01111111110
Q ss_pred --cchHHhhcCCcEEEeChHHHHHHHHccCc------ccccee-EEeecchhhhhh
Q 012013 214 --PQVRDLQKGVEIVIATPGRLIDMLESHNT------NLRRVT-YLVLDEADRMLD 260 (473)
Q Consensus 214 --~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~------~l~~~~-~vVvDEah~l~~ 260 (473)
........+.+|+++|.+.|...+.+.+. ++.+.. +++-||||++..
T Consensus 71 kvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 71 KVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred eecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 00111234578999999999877654332 233333 466799999864
No 238
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.68 E-value=0.11 Score=55.79 Aligned_cols=95 Identities=20% Similarity=0.261 Sum_probs=73.4
Q ss_pred cCchhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHHHh-CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 012013 294 VSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRM-DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 371 (473)
Q Consensus 294 ~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~ 371 (473)
.....|....+..+... ..+.++||.+++++.+..+.+.|++ .+..+..+||+++..+|...+.+..+|..+|+|+|.
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTr 249 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGAR 249 (679)
T ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecc
Confidence 34456766665555443 3456899999999999999999976 477899999999999999999999999999999995
Q ss_pred ccccCCCCCCCCEEEEcC
Q 012013 372 VAARGLDVKDVKYVINYD 389 (473)
Q Consensus 372 ~~~~Gidi~~v~~Vi~~~ 389 (473)
.+.. +.+.++.+||.-+
T Consensus 250 sal~-~p~~~l~liVvDE 266 (679)
T PRK05580 250 SALF-LPFKNLGLIIVDE 266 (679)
T ss_pred HHhc-ccccCCCEEEEEC
Confidence 3322 5566788777444
No 239
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.53 E-value=0.11 Score=53.89 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=70.7
Q ss_pred chhhHHHHHHHHHhHh-CCCeEEEEeCChHHHHHHHHHHHhC-CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 012013 296 ESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 373 (473)
Q Consensus 296 ~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~ 373 (473)
...|....+.++.... .+.++||.++++.-+..+++.|++. +..+..+|++++..+|...+.+..+|+.+|+|+|..+
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 3456655555554443 4568999999999999999999753 6778999999999999999999999999999999543
Q ss_pred ccCCCCCCCCEEEEc
Q 012013 374 ARGLDVKDVKYVINY 388 (473)
Q Consensus 374 ~~Gidi~~v~~Vi~~ 388 (473)
-. ..++++.+||.-
T Consensus 87 lf-~p~~~l~lIIVD 100 (505)
T TIGR00595 87 LF-LPFKNLGLIIVD 100 (505)
T ss_pred Hc-CcccCCCEEEEE
Confidence 32 456677777743
No 240
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.52 E-value=0.055 Score=62.36 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEccCCCChhHHh--HHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 012013 120 FEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAY--LLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT~~~--~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~ 188 (473)
..+++-|++|+..++.. +-+++.+..|+|||++. ++.++..+.. ..+..++.++||-.-+..+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHH
Confidence 36899999999999865 66788899999999862 1222222221 1256789999997666554
No 241
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.50 E-value=0.058 Score=62.05 Aligned_cols=122 Identities=19% Similarity=0.132 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCc
Q 012013 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (473)
Q Consensus 122 ~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~ 201 (473)
.|+-|.++|. ..+.++++.|.-|||||.+.+--++..+... .....+|+|+=|+..|..+.+++.+..... +
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~ 73 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKA-L 73 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHH-H
Confidence 5889999997 3678999999999999998655565555432 123469999999999999888877643210 0
Q ss_pred eEEEEEcCccC-ccchHHhhcCCcEEEeChHHHHHHHHccCcccc--ceeEEeecchhh
Q 012013 202 KSTCIYGGVPK-GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLR--RVTYLVLDEADR 257 (473)
Q Consensus 202 ~~~~~~gg~~~-~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~--~~~~vVvDEah~ 257 (473)
. ..+. ....+.+..-...-|+|-+.+...+.+.....- +..+=|.||...
T Consensus 74 ~------~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 Q------QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred h------cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 0000 011111222235778998887654443322111 224556888875
No 242
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.44 E-value=0.12 Score=45.52 Aligned_cols=103 Identities=18% Similarity=0.208 Sum_probs=57.2
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccch
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (473)
+=.++.+|+.||||.. ++-.+...... +.++++..|...- ++ +...+.-.-|...
T Consensus 5 ~l~~i~gpM~SGKT~e-Ll~r~~~~~~~-------g~~v~vfkp~iD~---------R~----~~~~V~Sr~G~~~---- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEE-LLRRARRYKEA-------GMKVLVFKPAIDT---------RY----GVGKVSSRIGLSS---- 59 (201)
T ss_pred EEEEEEccCcCcchHH-HHHHHHHHHHc-------CCeEEEEeccccc---------cc----ccceeeeccCCcc----
Confidence 3457889999999986 33333333322 6778888885211 11 1111222222211
Q ss_pred HHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHh
Q 012013 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272 (473)
Q Consensus 217 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~ 272 (473)
.-++|-.+..+.+.+....... .+++|.+|||+-+.. ..-.++.++..
T Consensus 60 ------~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~~-~~v~~l~~lad 107 (201)
T COG1435 60 ------EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFDE-ELVYVLNELAD 107 (201)
T ss_pred ------cceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCCH-HHHHHHHHHHh
Confidence 2466667777777776543322 288999999996533 22333444433
No 243
>PRK12377 putative replication protein; Provisional
Probab=95.42 E-value=0.098 Score=48.63 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=28.0
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 190 (473)
..++++.+|+|+|||..+ ..+...+... +..|+++ +..+|..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~~-------g~~v~~i-~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLAK-------GRSVIVV-TVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHc-------CCCeEEE-EHHHHHHHHHH
Confidence 357899999999999753 3334444432 4445544 44566665544
No 244
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.37 E-value=0.085 Score=58.35 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=67.6
Q ss_pred HHHHhHhCCCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-cccccCCCC
Q 012013 305 KLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDV 379 (473)
Q Consensus 305 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT-~~~~~Gidi 379 (473)
.++..+..+.+++|.+||..-|...++.+++ .++.+..+++..+..++..+++.+++|+.+|+|+| ..+...+.+
T Consensus 492 a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f 571 (926)
T TIGR00580 492 AAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKF 571 (926)
T ss_pred HHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCc
Confidence 3444445567899999999999988887764 35677889999999999999999999999999999 566677888
Q ss_pred CCCCEEE
Q 012013 380 KDVKYVI 386 (473)
Q Consensus 380 ~~v~~Vi 386 (473)
.++.+||
T Consensus 572 ~~L~llV 578 (926)
T TIGR00580 572 KDLGLLI 578 (926)
T ss_pred ccCCEEE
Confidence 8888877
No 245
>CHL00181 cbbX CbbX; Provisional
Probab=95.36 E-value=0.82 Score=43.64 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCChhHHhHH
Q 012013 136 GRDLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l 155 (473)
+.++++.+|+|+|||.++..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34689999999999987543
No 246
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.023 Score=55.88 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCChhHHhHH
Q 012013 136 GRDLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l 155 (473)
+..+++++|||+|||+....
T Consensus 137 g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45788899999999986443
No 247
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.35 E-value=0.045 Score=55.69 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCChhHHhHH
Q 012013 136 GRDLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l 155 (473)
++-+.+++|||+|||++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CcEEEEECCCCccHHHHHHH
Confidence 34577889999999987443
No 248
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.27 E-value=0.044 Score=53.30 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.9
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
++|+.+|+|+|||..+-
T Consensus 50 SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 50 SMILWGPPGTGKTTLAR 66 (436)
T ss_pred eeEEECCCCCCHHHHHH
Confidence 79999999999998544
No 249
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.22 E-value=0.29 Score=51.26 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=25.8
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 190 (473)
.+++.+++|+|||.. +..+...+... ..+.+++++. ..++..++..
T Consensus 316 pL~LyG~sGsGKTHL-L~AIa~~a~~~-----~~g~~V~Yit-aeef~~el~~ 361 (617)
T PRK14086 316 PLFIYGESGLGKTHL-LHAIGHYARRL-----YPGTRVRYVS-SEEFTNEFIN 361 (617)
T ss_pred cEEEECCCCCCHHHH-HHHHHHHHHHh-----CCCCeEEEee-HHHHHHHHHH
Confidence 488899999999974 22233333221 0145676654 4455554433
No 250
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.22 E-value=0.003 Score=55.09 Aligned_cols=111 Identities=23% Similarity=0.215 Sum_probs=43.7
Q ss_pred EEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHh
Q 012013 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219 (473)
Q Consensus 140 l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~ 219 (473)
|+.|+-|-|||.+.-+.+ ..+... ...+++|.+|+.+-++.+.+.+.+-....+++...... ........
T Consensus 1 VltA~RGRGKSa~lGl~~-a~l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAA-AALIQK------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCC-CCSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHH-HHHHHh------cCceEEEecCCHHHHHHHHHHHHhhccccccccccccc---cccccccc
Confidence 578999999997533322 222221 12579999999988887777665544333322200000 00000001
Q ss_pred hcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHH
Q 012013 220 QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271 (473)
Q Consensus 220 ~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~ 271 (473)
.....|-+..|+.+... ....++||||||=.+. .+.+.+++
T Consensus 71 ~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll 111 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLL 111 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHH
T ss_pred cccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHH
Confidence 12446777777654432 1235899999997542 44555554
No 251
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.20 E-value=0.057 Score=57.26 Aligned_cols=81 Identities=16% Similarity=0.055 Sum_probs=51.4
Q ss_pred HHHCCCCCCCHHHHHHHHHHhcCC--cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 012013 114 ISKAGFFEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (473)
Q Consensus 114 l~~~~~~~~~~~Q~~~i~~i~~~~--~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~ 191 (473)
+......++..-|.+.+..+++.+ -+++.|.-|-|||.+.-+.+....... ..-.++|.+|+.+-++.+.+.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~------~~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA------GSVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc------CCceEEEeCCCHHHHHHHHHH
Confidence 443334445555555666666543 577789999999987655442222211 034799999999988888877
Q ss_pred HHHhccCCC
Q 012013 192 STKFGASSK 200 (473)
Q Consensus 192 ~~~~~~~~~ 200 (473)
+.+-....+
T Consensus 281 a~~~l~~lg 289 (758)
T COG1444 281 AGKGLEFLG 289 (758)
T ss_pred HHHhHHHhC
Confidence 766444443
No 252
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.18 E-value=0.042 Score=52.59 Aligned_cols=59 Identities=29% Similarity=0.200 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHhcCC-cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 118 GFFEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 118 ~~~~~~~~Q~~~i~~i~~~~-~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
.|..+++-|...+..+...+ ++++++.||||||+ ++-++..... ..-++|++-.|.||.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT--lLNal~~~i~-------~~eRvItiEDtaELq 213 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT--LLNALSGFID-------SDERVITIEDTAELQ 213 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH--HHHHHHhcCC-------CcccEEEEeehhhhc
Confidence 45678999998888777665 99999999999997 3333333222 134899998988885
No 253
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.18 E-value=0.061 Score=51.95 Aligned_cols=65 Identities=23% Similarity=0.215 Sum_probs=42.0
Q ss_pred HHHHCCCCCCCHHHHHHHHHHh-cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 113 EISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 113 ~l~~~~~~~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
.+.+.+. +++.|.+.+..+. .+++++++++||||||+. +-.++..+...+ ...+++++-.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 3444443 5677877776554 567899999999999974 344444443221 145677777777764
No 254
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.18 E-value=0.04 Score=51.66 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=20.0
Q ss_pred ccccceeEEeecchhhhhhCCCHHHHHHHHh
Q 012013 242 TNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272 (473)
Q Consensus 242 ~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~ 272 (473)
.....+..||+||||.|.... ...+++++.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE 154 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTME 154 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHh
Confidence 345668999999999886543 334444444
No 255
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.17 E-value=0.11 Score=56.52 Aligned_cols=71 Identities=23% Similarity=0.171 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
..|+|-|.+++... ...++|.|..|||||.+... -+.++..... -...++|+++-|+..|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~-ria~Li~~~~---i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTH-RIAHLIAEKN---VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHH-HHHHHHHcCC---CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 35899999999753 46899999999999988444 3444443211 123569999999999999999998764
No 256
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.08 E-value=0.78 Score=46.00 Aligned_cols=80 Identities=18% Similarity=0.044 Sum_probs=53.1
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 012013 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (473)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~ 188 (473)
.+++.+++ .+..+...|.++.-..-.|.. .+.+=.|||||.+.++-+......+| ..+++|.+-|+.|+.++
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~knP------d~~I~~Tfftk~L~s~~ 222 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKNP------DSRIAFTFFTKILASTM 222 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCCC------CceEEEEeehHHHHHHH
Confidence 33444433 344566778777655555655 66788899999864333332222222 67899999999999999
Q ss_pred HHHHHHhc
Q 012013 189 QQESTKFG 196 (473)
Q Consensus 189 ~~~~~~~~ 196 (473)
...+.+|+
T Consensus 223 r~lv~~F~ 230 (660)
T COG3972 223 RTLVPEFF 230 (660)
T ss_pred HHHHHHHH
Confidence 98888775
No 257
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.05 E-value=0.12 Score=52.54 Aligned_cols=95 Identities=21% Similarity=0.302 Sum_probs=55.3
Q ss_pred HHHHHhc-----CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceE
Q 012013 129 GWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 203 (473)
Q Consensus 129 ~i~~i~~-----~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~ 203 (473)
.++.++. +.-+++.+++|+|||+..+.. +..+... +.+++++.- .+...|+...+.+++.... .
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~-a~~~a~~-------g~~vlYvs~-Ees~~qi~~ra~rlg~~~~--~ 136 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQV-AARLAAA-------GGKVLYVSG-EESASQIKLRAERLGLPSD--N 136 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHH-HHHHHhc-------CCeEEEEEc-cccHHHHHHHHHHcCCChh--c
Confidence 4445554 456788899999999753333 3332221 557888874 4556677777776643211 0
Q ss_pred EEEEcCccCccchHHhhcCCcEEEe---ChHHHHHHHHccCccccceeEEeecchhhhhh
Q 012013 204 TCIYGGVPKGPQVRDLQKGVEIVIA---TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (473)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~---Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~ 260 (473)
+.+. ..+.+.+.+.. .+.++||+|+++.+..
T Consensus 137 ---------------------l~~~~e~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 137 ---------------------LYLLAETNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred ---------------------EEEeCCCCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 1121 22334444332 2467999999998764
No 258
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.00 E-value=0.12 Score=60.43 Aligned_cols=65 Identities=25% Similarity=0.215 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 012013 120 FEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~ 188 (473)
..+++.|++|+..++.. +-+++.+..|+|||++ +-.++..+... ....+..++.++||-.-|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL---PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh---hcccCceEEEECCcHHHHHHH
Confidence 46899999999999975 4678889999999985 33333333211 111256789999997666544
No 259
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.99 E-value=0.045 Score=51.84 Aligned_cols=53 Identities=26% Similarity=0.169 Sum_probs=30.5
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 012013 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~ 193 (473)
+..+.-+++.|++|+|||...+..+...+.. .+..+++++- .+-..++...+.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS~-E~~~~~~~~r~~ 79 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTISL-EEPVVRTARRLL 79 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEEc-ccCHHHHHHHHH
Confidence 3456778899999999997544333333222 1556777763 222334444443
No 260
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.99 E-value=0.089 Score=54.26 Aligned_cols=71 Identities=20% Similarity=0.130 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhc-----C----CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 012013 124 PIQAQGWPMALK-----G----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (473)
Q Consensus 124 ~~Q~~~i~~i~~-----~----~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 194 (473)
|||+-.+..+.- + +.+++.-|=+.|||......++..+... ...+..+++++++++-|..+.+.+.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 678877766651 2 3578888999999986544444444332 22367899999999999999998888
Q ss_pred hccC
Q 012013 195 FGAS 198 (473)
Q Consensus 195 ~~~~ 198 (473)
+...
T Consensus 77 ~i~~ 80 (477)
T PF03354_consen 77 MIEA 80 (477)
T ss_pred HHHh
Confidence 7544
No 261
>PRK08116 hypothetical protein; Validated
Probab=94.98 E-value=0.18 Score=47.65 Aligned_cols=45 Identities=20% Similarity=0.187 Sum_probs=27.2
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 190 (473)
..+++.+++|+|||..+. .+...+... +..++++ +..+|...+..
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~-------~~~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK-------GVPVIFV-NFPQLLNRIKS 159 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc-------CCeEEEE-EHHHHHHHHHH
Confidence 348999999999997533 444554432 3445554 44455554443
No 262
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.034 Score=54.44 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=25.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 181 (473)
.++|+.+|||||||+.+ -.|+.++. -|.+|+=|-|
T Consensus 227 SNvLllGPtGsGKTlla--qTLAr~ld--------VPfaIcDcTt 261 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLA--QTLARVLD--------VPFAICDCTT 261 (564)
T ss_pred ccEEEECCCCCchhHHH--HHHHHHhC--------CCeEEecccc
Confidence 47899999999999843 35556555 5666665555
No 263
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.94 E-value=0.23 Score=54.33 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=15.1
Q ss_pred cceeEEeecchhhhhhCC
Q 012013 245 RRVTYLVLDEADRMLDMG 262 (473)
Q Consensus 245 ~~~~~vVvDEah~l~~~~ 262 (473)
.+++++||||+|+|....
T Consensus 119 ~~~KV~IIDEad~lt~~a 136 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG 136 (824)
T ss_pred CCceEEEEechhhcCHHH
Confidence 568899999999997654
No 264
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.92 E-value=0.22 Score=53.80 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=13.8
Q ss_pred cceeEEeecchhhhhhC
Q 012013 245 RRVTYLVLDEADRMLDM 261 (473)
Q Consensus 245 ~~~~~vVvDEah~l~~~ 261 (473)
..+.+|||||+|.+...
T Consensus 868 r~v~IIILDEID~L~kK 884 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK 884 (1164)
T ss_pred ccceEEEeehHhhhCcc
Confidence 34678999999999764
No 265
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.58 Score=46.24 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=18.0
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhc
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
++++-++||+|||.+. --++..+..
T Consensus 44 n~~iyG~~GTGKT~~~-~~v~~~l~~ 68 (366)
T COG1474 44 NIIIYGPTGTGKTATV-KFVMEELEE 68 (366)
T ss_pred cEEEECCCCCCHhHHH-HHHHHHHHh
Confidence 6888999999999873 334444443
No 266
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.85 E-value=0.11 Score=49.27 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=30.5
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHh-cCCCCC---CCCCCEEEEEcCcHHHHHHHHHHHHH
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVN-AQPFLA---PGDGPIVLVLAPTRELAVQIQQESTK 194 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~-~~~~~~---~~~~~~vlil~Pt~~La~q~~~~~~~ 194 (473)
.+++++++|+.|||... .+.. ..+... ...-|.+++-+|...-....+..+-.
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 37999999999999742 2221 112111 11236677777776555555554433
No 267
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.78 E-value=0.19 Score=49.69 Aligned_cols=98 Identities=16% Similarity=0.265 Sum_probs=54.0
Q ss_pred HHHHHHhc-----CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCce
Q 012013 128 QGWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202 (473)
Q Consensus 128 ~~i~~i~~-----~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~ 202 (473)
..++.++. +.-+++.+++|+|||+..+. ++..+... +.+++++.-. +...|+...+.+++....
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq-~a~~~a~~-------g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~-- 137 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQ-VAARLAKR-------GGKVLYVSGE-ESPEQIKLRADRLGISTE-- 137 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHH-HHHHHHhc-------CCeEEEEECC-cCHHHHHHHHHHcCCCcc--
Confidence 34445554 45678889999999975333 33332221 4568887654 445677666666542210
Q ss_pred EEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhh
Q 012013 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (473)
Q Consensus 203 ~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~ 259 (473)
...++. -.+.+.+.+.+.. .+.++||||+++.+.
T Consensus 138 ~l~l~~------------------e~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 138 NLYLLA------------------ETNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred cEEEEc------------------cCcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 000000 0122344444432 257899999999875
No 268
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.70 E-value=0.46 Score=49.97 Aligned_cols=69 Identities=10% Similarity=0.043 Sum_probs=47.0
Q ss_pred CCHHHHHHHHH---HhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 012013 122 PTPIQAQGWPM---ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (473)
Q Consensus 122 ~~~~Q~~~i~~---i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~ 197 (473)
|.|.=.+-|.. ....+-.++.+|=|.|||.+..+.++..+ .. .+.+++|++|...-+.++.+.+.++..
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La-~f------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMI-SF------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHH-Hh------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 44444444444 34456788889999999987544433333 21 157899999999999998888777654
No 269
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.69 E-value=0.066 Score=50.56 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHh----cCC-cEEEEccCCCChhHH
Q 012013 120 FEPTPIQAQGWPMAL----KGR-DLIGIAETGSGKTLA 152 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~----~~~-~~l~~a~TGsGKT~~ 152 (473)
..+++.+.+++..+. .+. .+++.+|+|+|||+.
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 22 FYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 345666777776653 233 578899999999975
No 270
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.68 E-value=0.69 Score=47.33 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=26.8
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 190 (473)
..+++.+|+|+|||... ..+...+... ..+.+++++ +..++..++..
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~-----~~~~~v~yi-~~~~~~~~~~~ 195 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEK-----NPNAKVVYV-TSEKFTNDFVN 195 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHh-----CCCCeEEEE-EHHHHHHHHHH
Confidence 35889999999999753 2333333331 114556666 44455544433
No 271
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.65 E-value=0.71 Score=47.00 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=25.5
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHH
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 187 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q 187 (473)
..+++.+|+|+|||.. +..+...+... +.+++++.. ..+..+
T Consensus 142 npl~L~G~~G~GKTHL-l~Ai~~~l~~~-------~~~v~yi~~-~~f~~~ 183 (445)
T PRK12422 142 NPIYLFGPEGSGKTHL-MQAAVHALRES-------GGKILYVRS-ELFTEH 183 (445)
T ss_pred ceEEEEcCCCCCHHHH-HHHHHHHHHHc-------CCCEEEeeH-HHHHHH
Confidence 3588999999999974 22334443332 456777653 344443
No 272
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.65 E-value=0.11 Score=49.79 Aligned_cols=67 Identities=25% Similarity=0.342 Sum_probs=41.5
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHH-hcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 111 MQEISKAGFFEPTPIQAQGWPMA-LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 111 ~~~l~~~~~~~~~~~Q~~~i~~i-~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
++.+.+.+. +++-|.+.+..+ ..+++++++++||||||.. +-.++..+...+ ...+++++-.+.||.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhhc
Confidence 344444443 455566666554 4567899999999999974 334444443211 145688888888874
No 273
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.63 E-value=0.3 Score=52.17 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=75.1
Q ss_pred chhhHHHHHHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHhC-C-CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 012013 296 ESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMD-G-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 372 (473)
Q Consensus 296 ~~~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~-~-~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~ 372 (473)
.+.|....++++..... ++.+||.++.+..+..+.+.|+.. + ..+..+|++++..+|...+.+..+|+.+|+|.|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 45788888888877665 558999999999999999999754 3 56899999999999999999999999999999944
Q ss_pred cccCCCCCCCCEEEEcC
Q 012013 373 AARGLDVKDVKYVINYD 389 (473)
Q Consensus 373 ~~~Gidi~~v~~Vi~~~ 389 (473)
+. =.-+++...||..+
T Consensus 250 Av-FaP~~~LgLIIvdE 265 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eE-EeccCCCCEEEEEc
Confidence 32 23455677777554
No 274
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.58 E-value=0.084 Score=48.86 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
...+++.+|+|+|||..
T Consensus 45 ~~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 45 SGYIYLWSREGAGRSHL 61 (235)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35789999999999974
No 275
>PTZ00293 thymidine kinase; Provisional
Probab=94.56 E-value=0.17 Score=45.59 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=25.3
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~ 182 (473)
|+=.++.+|++||||.-.+ -.+...... +.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLL-r~i~~y~~a-------g~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELM-RLVKRFTYS-------EKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHH-HHHHHHHHc-------CCceEEEEecc
Confidence 3345778999999997633 333333322 56788888853
No 276
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.55 E-value=2.4 Score=40.02 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=71.1
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEc-CcH--HHHHHHHHHHHHhccCCCceEEEEEcCcc
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA-PTR--ELAVQIQQESTKFGASSKIKSTCIYGGVP 211 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~-Pt~--~La~q~~~~~~~~~~~~~~~~~~~~gg~~ 211 (473)
.+..+++++++|+|||..+..-+.. +... +.++.++. .+. ..+.||....... ++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~~-------~~~v~~i~~D~~ri~~~~ql~~~~~~~----~~---------- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHGK-------KKTVGFITTDHSRIGTVQQLQDYVKTI----GF---------- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHHc-------CCeEEEEecCCCCHHHHHHHHHHhhhc----Cc----------
Confidence 3467888899999999865433322 2211 33444443 222 4555665444332 11
Q ss_pred CccchHHhhcCCcEEE-eChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhhhcCCCCccccccceee
Q 012013 212 KGPQVRDLQKGVEIVI-ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIGSPDLKANHAIRQH 290 (473)
Q Consensus 212 ~~~~~~~~~~~~~Iiv-~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~ 290 (473)
.+.. .++..+.+.+..-. ...++++||+|-+=+.... ...++.+...+....+. +.
T Consensus 132 ------------~~~~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~--~~~l~el~~~~~~~~~~--------~~ 188 (270)
T PRK06731 132 ------------EVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPD--------YI 188 (270)
T ss_pred ------------eEEecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCC--HHHHHHHHHHHhhhCCC--------eE
Confidence 2222 34555555443211 1235899999998664321 22333333322111111 23
Q ss_pred EEecCchhhHHHHHHHHHhHhCC-CeEEEEeCChH
Q 012013 291 VDIVSESQKYNKLVKLLEDIMDG-SRILIFMDTKK 324 (473)
Q Consensus 291 ~~~~~~~~k~~~l~~~l~~~~~~-~~~lVf~~~~~ 324 (473)
+.+.+...+.+.+.++++....- -.-|||+.--+
T Consensus 189 ~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlDe 223 (270)
T PRK06731 189 CLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDE 223 (270)
T ss_pred EEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeecC
Confidence 34445455556666666554432 25677775433
No 277
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.52 E-value=0.1 Score=52.53 Aligned_cols=120 Identities=13% Similarity=0.191 Sum_probs=68.2
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH-HHHHHHHHHHHhccCCCceEEEEEcCccCccch
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE-LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~-La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (473)
-.++.+..|||||.+..+-++..+...+ .+.+++|+-|+.. |...+...+.......++....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK-----KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC-----CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 3577899999999988877777776641 2577899989876 66667777765544444332111111110 11
Q ss_pred HHhhcCCcEEEeCh-HHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhh
Q 012013 217 RDLQKGVEIVIATP-GRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (473)
Q Consensus 217 ~~~~~~~~Iiv~Tp-~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~ 273 (473)
.....+..|++..- +...+ +. ....++++.+|||..+... .+..+...
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~r 124 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPR 124 (396)
T ss_pred EecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHH
Confidence 11111445666552 11111 11 1234689999999987432 44444443
No 278
>PRK14974 cell division protein FtsY; Provisional
Probab=94.51 E-value=0.19 Score=48.88 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=28.0
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC-c--HHHHHHHHHHHHHh
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP-T--RELAVQIQQESTKF 195 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P-t--~~La~q~~~~~~~~ 195 (473)
-+++++++|+|||++..- +...+... +.+++++.. + ..-..|+......+
T Consensus 142 vi~~~G~~GvGKTTtiak-LA~~l~~~-------g~~V~li~~Dt~R~~a~eqL~~~a~~l 194 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAK-LAYYLKKN-------GFSVVIAAGDTFRAGAIEQLEEHAERL 194 (336)
T ss_pred EEEEEcCCCCCHHHHHHH-HHHHHHHc-------CCeEEEecCCcCcHHHHHHHHHHHHHc
Confidence 467789999999985332 22333221 445655543 2 34445665555554
No 279
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.50 E-value=1.2 Score=44.92 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=24.5
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~ 186 (473)
.+++.+++|+|||... ..+...+... ..+..++++.. ..+..
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~-----~~~~~v~yi~~-~~~~~ 179 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILEN-----NPNAKVVYVSS-EKFTN 179 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHh-----CCCCcEEEEEH-HHHHH
Confidence 5789999999999753 3334444332 11455777643 34443
No 280
>PRK08727 hypothetical protein; Validated
Probab=94.48 E-value=0.12 Score=47.81 Aligned_cols=16 Identities=31% Similarity=0.200 Sum_probs=13.5
Q ss_pred CcEEEEccCCCChhHH
Q 012013 137 RDLIGIAETGSGKTLA 152 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (473)
..+++.+++|+|||..
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3488899999999964
No 281
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.46 E-value=0.13 Score=49.70 Aligned_cols=67 Identities=24% Similarity=0.278 Sum_probs=42.9
Q ss_pred HHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 111 MQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 111 ~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
++.+.+.|. +++.|.+.+.. +..+++++++++||||||.. +-.++..+...+ ...+++++-.+.||.
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~-----~~~rivtIEd~~El~ 191 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD-----PTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC-----CCceEEEEcCCCccc
Confidence 344545554 46778777765 44677999999999999964 444444432111 145677777777763
No 282
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.38 E-value=0.12 Score=50.91 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=19.4
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHh
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~ 162 (473)
.+.-+++++|||||||+. +-.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 456788899999999985 444555543
No 283
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.33 E-value=0.03 Score=63.81 Aligned_cols=94 Identities=26% Similarity=0.335 Sum_probs=76.7
Q ss_pred eEEEEeCChHHHHHHHHHHHhCC-CCeEEecCCCCH-----------HHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 012013 315 RILIFMDTKKGCDQITRQLRMDG-WPALSIHGDKSQ-----------AERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 382 (473)
Q Consensus 315 ~~lVf~~~~~~~~~l~~~L~~~~-~~~~~ihg~~~~-----------~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v 382 (473)
..++||+....+..+.+.++... +.+..+.|.+.+ ..+.+++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899999999999888886542 233334443321 235688999999999999999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHhhccccCCC
Q 012013 383 KYVINYDFPGSLEDYVHRIGRTGRAG 408 (473)
Q Consensus 383 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g 408 (473)
+.|+.++.|.....|+|..||+-+..
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997753
No 284
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.29 E-value=0.12 Score=61.93 Aligned_cols=62 Identities=24% Similarity=0.186 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEccCCCChhHHhH---HHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 012013 120 FEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYL---LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT~~~~---l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~ 188 (473)
..+++.|++|+..++.+ +-+++.+..|+|||+... -++...+.. .+..++.++||-.-|.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHH
Confidence 46899999999998865 456778999999997531 122222222 267799999997666544
No 285
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.26 E-value=0.083 Score=47.58 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=18.8
Q ss_pred cceeEEeecchhhhhhCCCHHHHHHHHh
Q 012013 245 RRVTYLVLDEADRMLDMGFEPQIKKILS 272 (473)
Q Consensus 245 ~~~~~vVvDEah~l~~~~~~~~~~~i~~ 272 (473)
.+...||+||||.|-+- ....++....
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtME 138 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTME 138 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHH
Confidence 67889999999988653 3444555443
No 286
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.23 E-value=0.26 Score=45.13 Aligned_cols=20 Identities=35% Similarity=0.290 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCChhHHhH
Q 012013 135 KGRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~ 154 (473)
....+++.+|+|+|||..+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35678999999999997543
No 287
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.22 E-value=0.15 Score=50.46 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=19.8
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
+..+++++|||||||+. +..++.++..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 44678899999999975 4555666553
No 288
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.21 E-value=0.11 Score=55.69 Aligned_cols=19 Identities=32% Similarity=0.221 Sum_probs=14.7
Q ss_pred CcEEEEccCCCChhHHhHH
Q 012013 137 RDLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (473)
+-+.+++|||+|||+++..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4567889999999986443
No 289
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.10 E-value=0.3 Score=44.87 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=31.5
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
.+..+++.+++|+|||..++..+...+.. +..+++++- .+.+.++.+.++.++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 35678889999999997544333333322 456777664 334455555555543
No 290
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.08 E-value=0.29 Score=55.58 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=63.5
Q ss_pred HhCCCeEEEEeCChHHHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-cccccCCCCCCCCE
Q 012013 310 IMDGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVKDVKY 384 (473)
Q Consensus 310 ~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT-~~~~~Gidi~~v~~ 384 (473)
+..+.+++|.|||..-|..++..+++. ++.+..+++..+..++..+++..++|..+|+|+| ..+...+.+.++.+
T Consensus 646 ~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~l 725 (1147)
T PRK10689 646 VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGL 725 (1147)
T ss_pred HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCE
Confidence 345678999999999999888887642 4567789999999999999999999999999999 45555677778887
Q ss_pred EE
Q 012013 385 VI 386 (473)
Q Consensus 385 Vi 386 (473)
||
T Consensus 726 LV 727 (1147)
T PRK10689 726 LI 727 (1147)
T ss_pred EE
Confidence 76
No 291
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.07 E-value=0.051 Score=56.87 Aligned_cols=68 Identities=19% Similarity=0.144 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHH-HHHHHh
Q 012013 121 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ-QESTKF 195 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~-~~~~~~ 195 (473)
..+|||.+.+..+... +.+++..++-+|||.+.+ .++-+..... ...+|++.||.++|..+. +.+...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~-n~~g~~i~~~------P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLL-NWIGYSIDQD------PGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHH-hhceEEEEeC------CCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 5689999999988764 578888999999998644 3444433321 345899999999998876 344443
No 292
>PRK06893 DNA replication initiation factor; Validated
Probab=94.03 E-value=0.12 Score=47.63 Aligned_cols=16 Identities=19% Similarity=0.007 Sum_probs=13.4
Q ss_pred CcEEEEccCCCChhHH
Q 012013 137 RDLIGIAETGSGKTLA 152 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (473)
..+++.+|+|+|||..
T Consensus 40 ~~l~l~G~~G~GKThL 55 (229)
T PRK06893 40 PFFYIWGGKSSGKSHL 55 (229)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3468999999999974
No 293
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.01 E-value=0.14 Score=45.05 Aligned_cols=48 Identities=23% Similarity=0.287 Sum_probs=28.1
Q ss_pred HHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 012013 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (473)
Q Consensus 132 ~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~ 188 (473)
++..++++++.+++|+|||..+.. +...+... +..|+++ +..+|...+
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~a-i~~~~~~~-------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVA-IANEAIRK-------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHH-HHHHHHHT-------T--EEEE-EHHHHHHHH
T ss_pred CcccCeEEEEEhhHhHHHHHHHHH-HHHHhccC-------CcceeEe-ecCceeccc
Confidence 344678999999999999986443 33444432 5567765 455666544
No 294
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.93 E-value=0.066 Score=58.95 Aligned_cols=101 Identities=19% Similarity=0.057 Sum_probs=63.1
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCC----------CCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEE
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQP----------FLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTC 205 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~----------~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~ 205 (473)
++.++++...|.|||..-+...+...-... ..........|||||. ++..||.+++.+..... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 457788899999999875544433321100 0011123458999997 67789999999987554 56655
Q ss_pred EEcCccCccchHHhhcCCcEEEeChHHHHHHHH
Q 012013 206 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE 238 (473)
Q Consensus 206 ~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~ 238 (473)
..|-.........---.+|||++|+..|..-+.
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~ 484 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELY 484 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhh
Confidence 554322211111122358999999999976554
No 295
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.92 E-value=0.036 Score=48.71 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=29.5
Q ss_pred HHhhcCCcEEEeChHHHHHHHHccCc--cccceeEEeecchhhhhh
Q 012013 217 RDLQKGVEIVIATPGRLIDMLESHNT--NLRRVTYLVLDEADRMLD 260 (473)
Q Consensus 217 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~--~l~~~~~vVvDEah~l~~ 260 (473)
+.....++|||+++.-|++-...... ...+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 34455689999999988865433222 123457899999998865
No 296
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.92 E-value=0.15 Score=49.07 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=16.3
Q ss_pred HhcCC--cEEEEccCCCChhHHh
Q 012013 133 ALKGR--DLIGIAETGSGKTLAY 153 (473)
Q Consensus 133 i~~~~--~~l~~a~TGsGKT~~~ 153 (473)
+.+++ ++|+++|.|+|||..+
T Consensus 157 ieq~~ipSmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 157 IEQNRIPSMILWGPPGTGKTTLA 179 (554)
T ss_pred HHcCCCCceEEecCCCCchHHHH
Confidence 34454 7999999999999743
No 297
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.88 E-value=0.13 Score=51.77 Aligned_cols=41 Identities=29% Similarity=0.372 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHhcCCc--EEEEccCCCChhHHhHHHHHHHHhc
Q 012013 122 PTPIQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 122 ~~~~Q~~~i~~i~~~~~--~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
+.+.|.+.+..+++... +++.+|||||||++ +..++..+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 37788888888776543 55679999999987 6677777665
No 298
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.81 E-value=0.49 Score=49.39 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=73.1
Q ss_pred HHHHHHHHHhHhCCCeEEEEeCChH----HHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-cccc
Q 012013 300 YNKLVKLLEDIMDGSRILIFMDTKK----GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAA 374 (473)
Q Consensus 300 ~~~l~~~l~~~~~~~~~lVf~~~~~----~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT-~~~~ 374 (473)
.-.++.++..+..+..+.+-+||.- +.+.+.++|...++.+..+.|.+....|.++++...+|+++|+|.| ..+.
T Consensus 298 vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ 377 (677)
T COG1200 298 VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ 377 (677)
T ss_pred HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh
Confidence 4456667777777789999999965 4455666677779999999999999999999999999999999999 5677
Q ss_pred cCCCCCCCCEEE
Q 012013 375 RGLDVKDVKYVI 386 (473)
Q Consensus 375 ~Gidi~~v~~Vi 386 (473)
..+++.++-+||
T Consensus 378 d~V~F~~LgLVI 389 (677)
T COG1200 378 DKVEFHNLGLVI 389 (677)
T ss_pred cceeecceeEEE
Confidence 899998888877
No 299
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.81 E-value=0.36 Score=45.67 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=14.6
Q ss_pred CcEEEEccCCCChhHHhHH
Q 012013 137 RDLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (473)
+-+++++++|+|||++..-
T Consensus 73 ~vi~l~G~~G~GKTTt~ak 91 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAK 91 (272)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4567779999999986443
No 300
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.80 E-value=0.3 Score=48.96 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=17.7
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHH
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHV 161 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~ 161 (473)
.++++.+|+|+|||.+ +-.++..+
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 5689999999999986 33344444
No 301
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.80 E-value=0.45 Score=43.81 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=32.5
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
..+.-+++.+++|+|||+.++- ++.....+ +.++++++.. +-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~-~~~~~~~~-------g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQR-LAYGFLQN-------GYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHH-HHHHHHhC-------CCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 3466788899999999976333 33333221 4567887743 33345555555544
No 302
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.78 E-value=0.27 Score=45.11 Aligned_cols=53 Identities=25% Similarity=0.242 Sum_probs=33.3
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
+..+++.+++|+|||+..+-.+...+... +.++++++- .+-..++.+.++.++
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs~-ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVSF-EEPPEELIENMKSFG 71 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEES-SS-HHHHHHHHHTTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEEe-cCCHHHHHHHHHHcC
Confidence 46788899999999976554454554430 345777764 344566777777664
No 303
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.74 E-value=0.19 Score=49.03 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=29.0
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
+..+++++++++||||||+. +-.++..+.. ..+++.+=.+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~--------~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPA--------IERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCC--------CCeEEEecCCCccc
Confidence 44678999999999999974 3334443322 35666665666654
No 304
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.72 E-value=0.26 Score=53.50 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=52.5
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHhC----C-CCeEE-ecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 012013 311 MDGSRILIFMDTKKGCDQITRQLRMD----G-WPALS-IHGDKSQAERDWVLSEFKAGKSPIMTATDVA 373 (473)
Q Consensus 311 ~~~~~~lVf~~~~~~~~~l~~~L~~~----~-~~~~~-ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~ 373 (473)
..++++++.+||..-+..+++.|++. + ..+.. +|+.++..++++.+++|.+|..+|||+|+.+
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 34579999999999888888888643 2 44433 9999999999999999999999999999643
No 305
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=93.68 E-value=0.14 Score=48.08 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=23.6
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
.++-+||||||+- ++..++...... ...-.|++|+|++...
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~lI~-P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQLIQ-PPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCccc-CCCCceEEECCCCCCC
Confidence 3566999999995 233333221111 1234589999976543
No 306
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.68 E-value=0.24 Score=48.68 Aligned_cols=19 Identities=37% Similarity=0.419 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCChhHHhH
Q 012013 136 GRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (473)
++.+++++|+|+|||....
T Consensus 206 ~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4467888999999998643
No 307
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.67 E-value=0.8 Score=44.40 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=17.5
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhc
Q 012013 139 LIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
+++.+|.|+|||.++. .+...+..
T Consensus 27 lL~~Gp~G~Gktt~a~-~lA~~l~~ 50 (325)
T COG0470 27 LLFYGPPGVGKTTAAL-ALAKELLC 50 (325)
T ss_pred eeeeCCCCCCHHHHHH-HHHHHHhC
Confidence 8899999999998744 34444443
No 308
>PRK10436 hypothetical protein; Provisional
Probab=93.63 E-value=0.17 Score=51.52 Aligned_cols=39 Identities=36% Similarity=0.465 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHhc--CCcEEEEccCCCChhHHhHHHHHHHHh
Q 012013 123 TPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVN 162 (473)
Q Consensus 123 ~~~Q~~~i~~i~~--~~~~l~~a~TGsGKT~~~~l~~l~~~~ 162 (473)
.+.|.+.+..+.. +.-+++++|||||||++ +..++..+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhC
Confidence 5556666655543 34577889999999986 445666654
No 309
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.61 E-value=0.18 Score=47.51 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=15.1
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
.++++.+|+|+|||.++-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999998643
No 310
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.60 E-value=0.1 Score=51.04 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=29.8
Q ss_pred HHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 132 ~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
.+..+++++++++||||||+. +-.++..+.. ..+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~--------~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIPP--------QERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccCC--------CCCEEEECCCcccc
Confidence 344678999999999999974 3333333221 34577777777764
No 311
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.59 E-value=0.27 Score=50.37 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCChhHHhH
Q 012013 135 KGRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~ 154 (473)
.++.+++++|||+|||+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45677888999999998643
No 312
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.57 E-value=0.22 Score=48.89 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~L 184 (473)
+..+++++|||||||+. +..++..+... ...+++.+-...|+
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 45788899999999985 33444444321 13456666555554
No 313
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.41 E-value=0.27 Score=52.50 Aligned_cols=96 Identities=20% Similarity=0.270 Sum_probs=77.6
Q ss_pred eEEecCchhhHHHHHHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHh-CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 012013 290 HVDIVSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRM-DGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 367 (473)
Q Consensus 290 ~~~~~~~~~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iL 367 (473)
.+.-+..+.|.+..++++..... ++.+||.++-+.....+...++. .+.++..+|+++++.+|...+.+..+|+.+|+
T Consensus 221 Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVV 300 (730)
T ss_pred eEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEE
Confidence 35566788899999988888765 44899999999999888888864 47889999999999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEE
Q 012013 368 TATDVAARGLDVKDVKYVI 386 (473)
Q Consensus 368 vaT~~~~~Gidi~~v~~Vi 386 (473)
|.|..+- =.-++++-.||
T Consensus 301 IGtRSAl-F~Pf~~LGLII 318 (730)
T COG1198 301 IGTRSAL-FLPFKNLGLII 318 (730)
T ss_pred EEechhh-cCchhhccEEE
Confidence 9994322 12344566655
No 314
>PRK05642 DNA replication initiation factor; Validated
Probab=93.39 E-value=0.22 Score=46.06 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=13.6
Q ss_pred CcEEEEccCCCChhHH
Q 012013 137 RDLIGIAETGSGKTLA 152 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (473)
..+++.+++|+|||-.
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4578999999999964
No 315
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.34 E-value=0.85 Score=47.00 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
.+.+++.+|+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999975
No 316
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.31 E-value=0.81 Score=42.22 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=32.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
+.-+++.+++|+|||..++..+...+.. +.+++++.-- +-..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--------g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--------GKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--------CCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 4567888999999997644433333322 5667777653 33455666666654
No 317
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.20 E-value=0.44 Score=50.93 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=15.2
Q ss_pred cceeEEeecchhhhhhCCC
Q 012013 245 RRVTYLVLDEADRMLDMGF 263 (473)
Q Consensus 245 ~~~~~vVvDEah~l~~~~~ 263 (473)
.+++++||||+|+|....+
T Consensus 118 gr~KVIIIDEah~LT~~A~ 136 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF 136 (830)
T ss_pred CCceEEEEeChhhCCHHHH
Confidence 4678999999999876543
No 318
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.19 E-value=0.41 Score=39.28 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=12.3
Q ss_pred EEEEccCCCChhHH
Q 012013 139 LIGIAETGSGKTLA 152 (473)
Q Consensus 139 ~l~~a~TGsGKT~~ 152 (473)
+++.+|+|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 57899999999975
No 319
>PHA00729 NTP-binding motif containing protein
Probab=93.14 E-value=0.39 Score=43.72 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=14.3
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
++++.+++|+|||..+.
T Consensus 19 nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78999999999997533
No 320
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.12 E-value=0.23 Score=50.43 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=14.4
Q ss_pred EEEEccCCCChhHHhHH
Q 012013 139 LIGIAETGSGKTLAYLL 155 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l 155 (473)
+++.+|.|+|||.++.+
T Consensus 43 ~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987543
No 321
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.10 E-value=0.16 Score=47.04 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=36.1
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
+..+++.+++|+|||+.++-.+...+.. +.++++++ +.+-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--------ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4678889999999997655444444432 56688887 4466677777777664
No 322
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.02 E-value=0.75 Score=45.58 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=17.6
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHH
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHV 161 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~ 161 (473)
.++++.+|+|+|||.+. -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57899999999999763 3344444
No 323
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.86 E-value=1 Score=41.66 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=26.0
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCC----CCCCCEEEEEc
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLA----PGDGPIVLVLA 179 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~----~~~~~~vlil~ 179 (473)
-.++.||.|+|||+..+-.++......+... .....+|||++
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 4688999999999875554444433222221 12356788887
No 324
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.84 E-value=0.12 Score=49.16 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=14.5
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
+.+++++|||+|||++..
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457788999999998643
No 325
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.84 E-value=2.2 Score=43.95 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=61.6
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccccCC-------CCCCCC
Q 012013 312 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARGL-------DVKDVK 383 (473)
Q Consensus 312 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~~~Gi-------di~~v~ 383 (473)
..+.+||.+|+++-+......|...++.+..+++..+..++..++.....+..+|+++|. .+.... ....+.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 456899999999999999999999999999999999999999999999999999999994 332222 345566
Q ss_pred EEE
Q 012013 384 YVI 386 (473)
Q Consensus 384 ~Vi 386 (473)
+||
T Consensus 130 ~iV 132 (470)
T TIGR00614 130 LIA 132 (470)
T ss_pred EEE
Confidence 655
No 326
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.83 E-value=0.37 Score=49.39 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=15.7
Q ss_pred CcEEEEccCCCChhHHhHH
Q 012013 137 RDLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (473)
+.+++.+|.|+|||.++.+
T Consensus 36 ha~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 36 QSILLVGASGVGKTTCARI 54 (491)
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 3689999999999987554
No 327
>PRK13764 ATPase; Provisional
Probab=92.82 E-value=0.25 Score=51.75 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=20.0
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHh
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~ 162 (473)
.++++++++|||||||+. +..++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 467899999999999975 444555544
No 328
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.79 E-value=0.64 Score=49.28 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=14.8
Q ss_pred cceeEEeecchhhhhhCC
Q 012013 245 RRVTYLVLDEADRMLDMG 262 (473)
Q Consensus 245 ~~~~~vVvDEah~l~~~~ 262 (473)
..+.++||||+|+|....
T Consensus 118 g~~KV~IIDEah~Ls~~a 135 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS 135 (647)
T ss_pred CCCEEEEEechHhCCHHH
Confidence 468899999999987654
No 329
>PF05729 NACHT: NACHT domain
Probab=92.78 E-value=2.1 Score=36.51 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=27.8
Q ss_pred HHHHHHh-HhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHH
Q 012013 303 LVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF 359 (473)
Q Consensus 303 l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f 359 (473)
+..++.. ...+-+++|.|.+...-+ +...+... ....+ ..++..+..+.++.+
T Consensus 109 l~~l~~~~~~~~~~liit~r~~~~~~-~~~~~~~~--~~~~l-~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 109 LSQLLPQALPPGVKLIITSRPRAFPD-LRRRLKQA--QILEL-EPFSEEDIKQYLRKY 162 (166)
T ss_pred HHHHhhhccCCCCeEEEEEcCChHHH-HHHhcCCC--cEEEE-CCCCHHHHHHHHHHH
Confidence 3344443 233447777776644433 55555443 34445 356666666655543
No 330
>PRK05973 replicative DNA helicase; Provisional
Probab=92.77 E-value=0.39 Score=44.26 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
.++|.. +..--+..+.-++|.|++|+|||+..+-.+...+.. +.+++|++-- +-..|+.+.+..++
T Consensus 50 ~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--------Ge~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 50 ATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--------GRTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred CCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEEe-CCHHHHHHHHHHcC
Confidence 456632 233345556778889999999997654444433322 5567777542 34567777777653
No 331
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.73 E-value=1 Score=45.28 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=13.4
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
-+++++++|+|||++..
T Consensus 102 vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCT 118 (429)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46778999999997643
No 332
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.56 E-value=0.15 Score=52.46 Aligned_cols=50 Identities=28% Similarity=0.438 Sum_probs=39.2
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
.+++++||||||||..+++|.+... ...+||+-|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~----------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY----------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc----------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999999976432 1258888899899887777666654
No 333
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.47 E-value=0.52 Score=46.07 Aligned_cols=17 Identities=41% Similarity=0.415 Sum_probs=14.4
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
.+++.+|+|+|||..+.
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999998643
No 334
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.44 E-value=0.25 Score=51.96 Aligned_cols=79 Identities=23% Similarity=0.433 Sum_probs=61.0
Q ss_pred HHHhcCCCcEEEEecccccCCCCCCCCE--------EEEcCCCCCHHHHHHhhccccCCCCC-cEEEEEeccc---cHHH
Q 012013 357 SEFKAGKSPIMTATDVAARGLDVKDVKY--------VINYDFPGSLEDYVHRIGRTGRAGAK-GTAYTFFTAA---NARF 424 (473)
Q Consensus 357 ~~f~~g~~~iLvaT~~~~~Gidi~~v~~--------Vi~~~~p~s~~~~~Qr~GR~gR~g~~-g~~~~~~~~~---~~~~ 424 (473)
++|..|+..|-|-..+++.||.+..-+- =|-+.+|||.+.-+|..||++|.++- +--|+|+..+ +.++
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRF 930 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRF 930 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHH
Confidence 5799999999999999999999876443 34678999999999999999998764 5566665543 5666
Q ss_pred HHHHHHHHHHh
Q 012013 425 AKELITILEEA 435 (473)
Q Consensus 425 ~~~l~~~l~~~ 435 (473)
+.-+.+-|+..
T Consensus 931 AS~VAKRLESL 941 (1300)
T KOG1513|consen 931 ASIVAKRLESL 941 (1300)
T ss_pred HHHHHHHHHhh
Confidence 66666666553
No 335
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.38 E-value=0.41 Score=43.96 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
...+++.+++|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999964
No 336
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.33 E-value=0.67 Score=48.91 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.7
Q ss_pred cEEEEccCCCChhHHhHH
Q 012013 138 DLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (473)
.+|+.+|.|+|||.++.+
T Consensus 39 AyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARI 56 (702)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468899999999986543
No 337
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.26 E-value=0.67 Score=42.58 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=30.9
Q ss_pred HHhcCC-cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 132 MALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 132 ~i~~~~-~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.+..++ -+.++++.|||||...- .++...... ....+++-.||-..+.-....+..+
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d------~~~~v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR-ALLASLNED------QVAVVVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH-HHHHhcCCC------ceEEEEecCcchhHHHHHHHHHHHh
Confidence 344556 56778999999998754 333333321 1222344445655554444444444
No 338
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.19 E-value=0.33 Score=51.06 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHhc--CCcEEEEccCCCChhHHhHHHHHHHHh
Q 012013 123 TPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVN 162 (473)
Q Consensus 123 ~~~Q~~~i~~i~~--~~~~l~~a~TGsGKT~~~~l~~l~~~~ 162 (473)
.+-|.+.+..++. ..-+++++|||||||++ +..++..+.
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhhC
Confidence 5667777766554 33567889999999986 445666553
No 339
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.19 E-value=0.91 Score=44.20 Aligned_cols=87 Identities=20% Similarity=0.122 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHhcCC----cEEEEccCCCChhHHhHHHHHHHHhcC-CC-------------CCCCCCCEEEEEcCcH
Q 012013 121 EPTPIQAQGWPMALKGR----DLIGIAETGSGKTLAYLLPAIVHVNAQ-PF-------------LAPGDGPIVLVLAPTR 182 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~----~~l~~a~TGsGKT~~~~l~~l~~~~~~-~~-------------~~~~~~~~vlil~Pt~ 182 (473)
.++|||...|..+.... ..++.+|.|.|||..+.. +...++.. +. ...+..|-+.++.|..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~ 81 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE 81 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC
Confidence 45899999998887543 478899999999976443 33444432 11 0123456788888742
Q ss_pred ----HHHHHHHHHHHHhc---cCCCceEEEEEc
Q 012013 183 ----ELAVQIQQESTKFG---ASSKIKSTCIYG 208 (473)
Q Consensus 183 ----~La~q~~~~~~~~~---~~~~~~~~~~~g 208 (473)
.-+.|+.+....+. ...+.+++.+..
T Consensus 82 ~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~ 114 (328)
T PRK05707 82 ADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEP 114 (328)
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCeEEEECC
Confidence 24456665444432 223455555533
No 340
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.19 E-value=0.34 Score=42.96 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHh-cCCcEEEEccCCCChhHH
Q 012013 121 EPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~ 152 (473)
.+++-|.+.+.... .+..+++++|||||||+.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 35667777776654 577889999999999974
No 341
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.17 E-value=0.55 Score=47.92 Aligned_cols=49 Identities=22% Similarity=0.123 Sum_probs=28.5
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~ 192 (473)
..+++.+++|+|||.. +..+...+... ..+.+++++.+ .++...+...+
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~-----~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESN-----FSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHh-----CCCCeEEEEEH-HHHHHHHHHHH
Confidence 3588999999999964 22333333321 11456776655 45655555444
No 342
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.14 E-value=0.53 Score=48.59 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=41.4
Q ss_pred HHHHHHHhcC-----CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 127 AQGWPMALKG-----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 127 ~~~i~~i~~~-----~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
...+..++.| ..+++.+|+|+|||+..+..+...+.. +.++++++ ..|-..|+...++.++
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~--------ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN--------KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 3445565543 467888999999998644443333322 56788876 5577788888888775
No 343
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.09 E-value=0.29 Score=45.55 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=16.8
Q ss_pred HhcCCcEEEEccCCCChhH
Q 012013 133 ALKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~ 151 (473)
+-.|+.+++.+|.|+|||+
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 4468899999999999996
No 344
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.99 E-value=0.35 Score=45.53 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHhc-C-CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 012013 123 TPIQAQGWPMALK-G-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (473)
Q Consensus 123 ~~~Q~~~i~~i~~-~-~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~ 183 (473)
.+-|.+.+..++. . ..++++++||||||.. +..++..+.. ...+++.+-...|
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~~-------~~~~iitiEdp~E 119 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELNT-------PEKNIITVEDPVE 119 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhCC-------CCCeEEEECCCce
Confidence 4456666655443 3 3578889999999975 3444455432 1345666554444
No 345
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.99 E-value=0.15 Score=51.09 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=36.6
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
+++++|+||||||..+++|.+... ...++|+-|--++........++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999888876542 245888889889987666655543
No 346
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.97 E-value=0.17 Score=46.89 Aligned_cols=39 Identities=31% Similarity=0.181 Sum_probs=25.2
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 179 (473)
..|.-+++.|++|+|||...+--++..+... +..+++++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-------g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ-------GKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCceEEEe
Confidence 3456788899999999975433333333321 45688877
No 347
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.91 E-value=0.32 Score=46.90 Aligned_cols=43 Identities=26% Similarity=0.243 Sum_probs=27.2
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~ 186 (473)
++-+.+.+|+|+|||..++ .++...... +..++++..-..+..
T Consensus 55 G~iteI~G~~GsGKTtLaL-~~~~~~~~~-------g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLAL-HAIAEAQKA-------GGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHH-HHHHHHHHc-------CCcEEEEcccchhHH
Confidence 4567888999999997644 344443332 556777765544443
No 348
>PF13173 AAA_14: AAA domain
Probab=91.90 E-value=0.95 Score=37.31 Aligned_cols=25 Identities=24% Similarity=0.491 Sum_probs=17.6
Q ss_pred ceeEEeecchhhhhhCCCHHHHHHHHh
Q 012013 246 RVTYLVLDEADRMLDMGFEPQIKKILS 272 (473)
Q Consensus 246 ~~~~vVvDEah~l~~~~~~~~~~~i~~ 272 (473)
.-.+|++||+|.+.+ +...++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d 85 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVD 85 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHH
Confidence 466899999999853 4555555544
No 349
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.77 E-value=0.46 Score=47.04 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=17.1
Q ss_pred HhcCCcEEEEccCCCChhHH
Q 012013 133 ALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~ 152 (473)
+-.|+.+++++|+|+|||..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred eCCCCEEEEECCCCCChhHH
Confidence 33688999999999999974
No 350
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.76 E-value=1.5 Score=42.10 Aligned_cols=105 Identities=22% Similarity=0.318 Sum_probs=53.1
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC-c-HHHHHHHHHHHHHhccCCCceEEEE-EcCccCcc
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP-T-RELAVQIQQESTKFGASSKIKSTCI-YGGVPKGP 214 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P-t-~~La~q~~~~~~~~~~~~~~~~~~~-~gg~~~~~ 214 (473)
.+++++-.|+|||++ +--+..++..+ +.+|++.+- | |+=| .++++.|+...+..++.- +|+.+.
T Consensus 141 Vil~vGVNG~GKTTT-IaKLA~~l~~~-------g~~VllaA~DTFRAaA---iEQL~~w~er~gv~vI~~~~G~DpA-- 207 (340)
T COG0552 141 VILFVGVNGVGKTTT-IAKLAKYLKQQ-------GKSVLLAAGDTFRAAA---IEQLEVWGERLGVPVISGKEGADPA-- 207 (340)
T ss_pred EEEEEecCCCchHhH-HHHHHHHHHHC-------CCeEEEEecchHHHHH---HHHHHHHHHHhCCeEEccCCCCCcH--
Confidence 356779999999986 32333333332 667777653 2 3333 233334443444444431 122111
Q ss_pred chHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhC-CCHHHHHHHHhh
Q 012013 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQ 273 (473)
Q Consensus 215 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~-~~~~~~~~i~~~ 273 (473)
.| ..+-++... -+.+++|++|=|=||-+. +....+++|...
T Consensus 208 ---------aV-------afDAi~~Ak--ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV 249 (340)
T COG0552 208 ---------AV-------AFDAIQAAK--ARGIDVVLIDTAGRLHNKKNLMDELKKIVRV 249 (340)
T ss_pred ---------HH-------HHHHHHHHH--HcCCCEEEEeCcccccCchhHHHHHHHHHHH
Confidence 11 122222221 245677777777776543 455666666554
No 351
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.74 E-value=3.2 Score=41.61 Aligned_cols=20 Identities=35% Similarity=0.290 Sum_probs=15.1
Q ss_pred cEEEEccCCCChhHHhHHHH
Q 012013 138 DLIGIAETGSGKTLAYLLPA 157 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~ 157 (473)
-+++++|+|+|||++..-.+
T Consensus 225 vi~lvGptGvGKTTtaaKLA 244 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLA 244 (432)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46778999999998754433
No 352
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.74 E-value=0.067 Score=49.30 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=11.9
Q ss_pred EEEEccCCCChhHH
Q 012013 139 LIGIAETGSGKTLA 152 (473)
Q Consensus 139 ~l~~a~TGsGKT~~ 152 (473)
+++.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 36889999999974
No 353
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=91.62 E-value=0.18 Score=53.14 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=40.5
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
++++++||||||||..+++|.+... ...+||+=|--|+........++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4789999999999999999988763 2348888899999987777776653
No 354
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.53 E-value=0.62 Score=48.07 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=15.2
Q ss_pred cEEEEccCCCChhHHhHH
Q 012013 138 DLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (473)
.+++.+|.|+|||.++.+
T Consensus 45 a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARI 62 (507)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 688999999999987553
No 355
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.51 E-value=0.26 Score=51.07 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=14.7
Q ss_pred cEEEEccCCCChhHHhHH
Q 012013 138 DLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (473)
.+++.+|.|+|||.++.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRI 57 (509)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 468999999999987553
No 356
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.48 E-value=0.56 Score=46.29 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=20.8
Q ss_pred HHHHHHHHHHh---cCCcEEEEccCCCChhHH
Q 012013 124 PIQAQGWPMAL---KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 124 ~~Q~~~i~~i~---~~~~~l~~a~TGsGKT~~ 152 (473)
++=..++..+. .|+..++.||.|+|||+.
T Consensus 154 ~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 154 DLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred ccceeeeeeecccccCceEEEeCCCCCChhHH
Confidence 33344444433 688999999999999974
No 357
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=91.36 E-value=1.4 Score=43.31 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=48.7
Q ss_pred EEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH---HHHHHHhccCCCceEEEEEcCccCccch
Q 012013 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI---QQESTKFGASSKIKSTCIYGGVPKGPQV 216 (473)
Q Consensus 140 l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~---~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (473)
++.++.|+|||.+..+.++..+...+. ...++++.....+...+ ...+..+... .+....... .....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~ 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEW---NDRKI 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE----SSEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccC---CCCcE
Confidence 467899999999887777777776431 24555554444444442 2333333333 222211100 00000
Q ss_pred HHhhcCCcEEEeChHHH--HHHHHccCccccceeEEeecchhhhhhCC
Q 012013 217 RDLQKGVEIVIATPGRL--IDMLESHNTNLRRVTYLVLDEADRMLDMG 262 (473)
Q Consensus 217 ~~~~~~~~Iiv~Tp~~l--~~~l~~~~~~l~~~~~vVvDEah~l~~~~ 262 (473)
.+..+..|.+.+...- ..-+.- ..+++|++||+-.+.+..
T Consensus 72 -~~~nG~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~~~~ 113 (384)
T PF03237_consen 72 -ILPNGSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVPDDA 113 (384)
T ss_dssp -EETTS-EEEEES-----SHHHHHT-----S--SEEEEESGGGSTTHH
T ss_pred -EecCceEEEEeccccccccccccc-----cccceeeeeecccCchHH
Confidence 0134555666663321 111111 357899999988765443
No 358
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.33 E-value=0.8 Score=44.54 Aligned_cols=46 Identities=22% Similarity=0.246 Sum_probs=29.0
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHH
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~ 189 (473)
.+.++++.++||+|||..+. .+...+... +..|+++ +..+|..+..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~~-------g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLDR-------GKSVIYR-TADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHC-------CCeEEEE-EHHHHHHHHH
Confidence 35789999999999997533 334444432 5567665 4455655443
No 359
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.18 E-value=0.43 Score=48.22 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.4
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
++++.+|+|+|||..+.
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68899999999997543
No 360
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.13 E-value=0.47 Score=43.78 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=18.1
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhc
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
=++++++|||||+.+ +..++.+...
T Consensus 129 LviiVGaTGSGKSTt-mAaMi~yRN~ 153 (375)
T COG5008 129 LVIIVGATGSGKSTT-MAAMIGYRNK 153 (375)
T ss_pred eEEEECCCCCCchhh-HHHHhccccc
Confidence 467789999999986 5556655444
No 361
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.12 E-value=0.28 Score=46.41 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=28.8
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
..+.+++++++||||||.. +-.++..+... ..+++++-.+.|+.
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~-------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE-------DERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT-------TSEEEEEESSS-S-
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc-------ccceEEecccccee
Confidence 4467899999999999975 44445444331 35677777666653
No 362
>PRK04195 replication factor C large subunit; Provisional
Probab=91.09 E-value=1.8 Score=44.76 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
.+.+++.+|+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457899999999999753
No 363
>PRK09354 recA recombinase A; Provisional
Probab=91.07 E-value=0.4 Score=46.77 Aligned_cols=43 Identities=21% Similarity=0.144 Sum_probs=28.1
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~ 186 (473)
++-+.+.+|+|||||..++..+... ... +..++++..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~-~~~-------G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEA-QKA-------GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHc-------CCcEEEECCccchHH
Confidence 4567788999999998644433333 321 567888876555543
No 364
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.97 E-value=0.87 Score=45.14 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=13.6
Q ss_pred EEEEccCCCChhHHhH
Q 012013 139 LIGIAETGSGKTLAYL 154 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~ 154 (473)
+++.+|.|+|||..+.
T Consensus 41 ~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 41 WLLSGTRGVGKTTIAR 56 (363)
T ss_pred EEEecCCCCCHHHHHH
Confidence 5889999999998644
No 365
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.96 E-value=0.25 Score=49.57 Aligned_cols=19 Identities=37% Similarity=0.319 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCChhHHhH
Q 012013 136 GRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (473)
+..+.+++|||+|||+...
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4557888999999998643
No 366
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.92 E-value=1.2 Score=46.91 Aligned_cols=19 Identities=26% Similarity=0.190 Sum_probs=15.1
Q ss_pred cEEEEccCCCChhHHhHHH
Q 012013 138 DLIGIAETGSGKTLAYLLP 156 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~ 156 (473)
.+|+++|.|+|||.++-+.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4688999999999875543
No 367
>PRK09183 transposase/IS protein; Provisional
Probab=90.87 E-value=0.56 Score=44.08 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=28.8
Q ss_pred HHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHH
Q 012013 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 187 (473)
Q Consensus 132 ~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q 187 (473)
.+..+.++++.+|+|+|||..+..... .+... +..++++. ..+|..+
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~~-~a~~~-------G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALGY-EAVRA-------GIKVRFTT-AADLLLQ 144 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHHH-HHHHc-------CCeEEEEe-HHHHHHH
Confidence 355678999999999999975443222 22221 55676653 3455443
No 368
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.84 E-value=0.64 Score=49.37 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.9
Q ss_pred cEEEEccCCCChhHHhHH
Q 012013 138 DLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (473)
.+|+.+|.|+|||.++.+
T Consensus 40 a~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARI 57 (709)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 579999999999986543
No 369
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.80 E-value=0.37 Score=43.29 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=23.1
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 012013 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~L 184 (473)
+++++|||||||+. +..++..+... .+.+++.+....++
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~~~------~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYINKN------KTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhhhc------CCcEEEEEcCCccc
Confidence 57889999999985 33344444321 13455655544343
No 370
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.79 E-value=1.4 Score=44.41 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=14.2
Q ss_pred cEEEEccCCCChhHHhHH
Q 012013 138 DLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (473)
-+++++++|+|||++..-
T Consensus 101 vi~~vG~~GsGKTTtaak 118 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGK 118 (428)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467789999999987443
No 371
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.77 E-value=1.3 Score=46.93 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=14.5
Q ss_pred cEEEEccCCCChhHHhHH
Q 012013 138 DLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (473)
.+|+.+|.|+|||.++.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI 57 (585)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358899999999986443
No 372
>PF12846 AAA_10: AAA-like domain
Probab=90.75 E-value=0.38 Score=45.95 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=30.2
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~ 186 (473)
.+++++|+||+|||.... .++..+... +..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchHHH
Confidence 578999999999998755 555555443 677888877755544
No 373
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.68 E-value=0.42 Score=46.20 Aligned_cols=57 Identities=23% Similarity=0.144 Sum_probs=37.8
Q ss_pred CCCCHHHHHHH-HHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 120 FEPTPIQAQGW-PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 120 ~~~~~~Q~~~i-~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
..+.+.|..-+ .++..+++++++++||||||.. +.+++..+-. ..+++.+=-|.++.
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~--------~~rivtIEdt~E~~ 183 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP--------EERIVTIEDTPELK 183 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc--------hhcEEEEecccccc
Confidence 35566665544 4555788999999999999974 5555554432 34567666666653
No 374
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.68 E-value=1.5 Score=48.72 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=70.4
Q ss_pred hhHHHHH-HHHHhHhCCCeEEEEeCChHHHHHHHHHHH----hCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-c
Q 012013 298 QKYNKLV-KLLEDIMDGSRILIFMDTKKGCDQITRQLR----MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-D 371 (473)
Q Consensus 298 ~k~~~l~-~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~----~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT-~ 371 (473)
.|....+ .....+.+++.|.|.|||.--|+.-++.++ ...+++..+.--.+..++.++++..++|+++|+|.| .
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 3444333 344555677899999999876666555554 445667788888889999999999999999999999 8
Q ss_pred ccccCCCCCCCCEEE
Q 012013 372 VAARGLDVKDVKYVI 386 (473)
Q Consensus 372 ~~~~Gidi~~v~~Vi 386 (473)
++..+|-+.++-.||
T Consensus 707 LL~kdv~FkdLGLlI 721 (1139)
T COG1197 707 LLSKDVKFKDLGLLI 721 (1139)
T ss_pred hhCCCcEEecCCeEE
Confidence 899999999999888
No 375
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=90.66 E-value=0.46 Score=48.90 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHhcC-Cc-EEEEccCCCChhHHhHHHHHHHH
Q 012013 123 TPIQAQGWPMALKG-RD-LIGIAETGSGKTLAYLLPAIVHV 161 (473)
Q Consensus 123 ~~~Q~~~i~~i~~~-~~-~l~~a~TGsGKT~~~~l~~l~~~ 161 (473)
.+-|.+.+..+... +. +++++|||||||+. +..++..+
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 66677777766653 33 57889999999985 33445544
No 376
>PLN03025 replication factor C subunit; Provisional
Probab=90.64 E-value=1.5 Score=42.63 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=14.8
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
.++++.+|+|+|||..+.
T Consensus 35 ~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 35 PNLILSGPPGTGKTTSIL 52 (319)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999997633
No 377
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=90.58 E-value=0.52 Score=45.68 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=15.5
Q ss_pred ceeEEeecchhhhhhCCCHHHHHHH
Q 012013 246 RVTYLVLDEADRMLDMGFEPQIKKI 270 (473)
Q Consensus 246 ~~~~vVvDEah~l~~~~~~~~~~~i 270 (473)
..++|||||+|.+........+..+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~ 124 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSF 124 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHH
Confidence 4678999999988332223334433
No 378
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.53 E-value=1.2 Score=47.05 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=15.5
Q ss_pred ccceeEEeecchhhhhhCCC
Q 012013 244 LRRVTYLVLDEADRMLDMGF 263 (473)
Q Consensus 244 l~~~~~vVvDEah~l~~~~~ 263 (473)
..+++++||||+|+|....+
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa 141 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF 141 (700)
T ss_pred cCCceEEEEEChHhcCHHHH
Confidence 34688999999999876443
No 379
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.51 E-value=0.6 Score=45.57 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=14.9
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
..+++.+|+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 478999999999997533
No 380
>PRK04328 hypothetical protein; Provisional
Probab=90.51 E-value=0.47 Score=44.28 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=34.0
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
+..+++.+++|+|||...+-.+...+.. +.++++++ +.+-..++.+.++.++
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4578889999999997544434443332 55677776 4455566777777664
No 381
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.44 E-value=0.27 Score=47.41 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=13.9
Q ss_pred CcEEEEccCCCChhHH
Q 012013 137 RDLIGIAETGSGKTLA 152 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (473)
.++++.+|+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4689999999999974
No 382
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.38 E-value=0.36 Score=34.09 Aligned_cols=26 Identities=38% Similarity=0.376 Sum_probs=19.1
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
+...++.+++|+|||. ++-++..++-
T Consensus 23 g~~tli~G~nGsGKST--llDAi~~~L~ 48 (62)
T PF13555_consen 23 GDVTLITGPNGSGKST--LLDAIQTVLY 48 (62)
T ss_pred CcEEEEECCCCCCHHH--HHHHHHHHHc
Confidence 3468999999999998 4555555443
No 383
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=90.32 E-value=1.1 Score=38.99 Aligned_cols=85 Identities=15% Similarity=0.118 Sum_probs=49.0
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH
Q 012013 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 218 (473)
+++.+++|||||..+.-.+.. . +.++++++-...+-..+.+.+.+.....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~-------~~~~~y~at~~~~d~em~~rI~~H~~~R------------------- 51 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----L-------GGPVTYIATAEAFDDEMAERIARHRKRR------------------- 51 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----c-------CCCeEEEEccCcCCHHHHHHHHHHHHhC-------------------
Confidence 578899999999754432221 1 4568888777777666777666542111
Q ss_pred hhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhh
Q 012013 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (473)
Q Consensus 219 ~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~ 259 (473)
...-..+-.|..|.+.+.... ..+.|+||=...+.
T Consensus 52 --~~~w~t~E~~~~l~~~l~~~~----~~~~VLIDclt~~~ 86 (169)
T cd00544 52 --PAHWRTIETPRDLVSALKELD----PGDVVLIDCLTLWV 86 (169)
T ss_pred --CCCceEeecHHHHHHHHHhcC----CCCEEEEEcHhHHH
Confidence 111233445555566554321 34468888766543
No 384
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=90.20 E-value=1.5 Score=40.56 Aligned_cols=103 Identities=13% Similarity=0.220 Sum_probs=69.7
Q ss_pred CCCeEEecCCCCHHHHHHHHHHHhcCC----CcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhcc-ccCCCCCc
Q 012013 337 GWPALSIHGDKSQAERDWVLSEFKAGK----SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGR-TGRAGAKG 411 (473)
Q Consensus 337 ~~~~~~ihg~~~~~~r~~~~~~f~~g~----~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR-~gR~g~~g 411 (473)
++.+..++++.+... -.|.++. ..|+|.=+.++||+.++++.+..+...+.+.+++.||.=- .=|.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 456666665544322 2333332 6688888999999999999999999999988999888422 23566678
Q ss_pred EEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHhcc
Q 012013 412 TAYTFFTAANARFAKELITILEEAGQKVSPELAAMGR 448 (473)
Q Consensus 412 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 448 (473)
.|-+|.++.-...... +.++..++.++|.+|+.
T Consensus 185 l~Ri~~~~~l~~~f~~----i~~~~e~lr~~i~~~~~ 217 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRH----IAEAEEELREEIKEMAN 217 (239)
T ss_pred ceEEecCHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 8888887754444444 44444555666666654
No 385
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=90.18 E-value=0.45 Score=42.62 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.3
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
-+++++|||+|||++.
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 3678899999999873
No 386
>CHL00176 ftsH cell division protein; Validated
Probab=90.17 E-value=4.7 Score=43.07 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=14.3
Q ss_pred CcEEEEccCCCChhHH
Q 012013 137 RDLIGIAETGSGKTLA 152 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (473)
+.+++.+|+|+|||+.
T Consensus 217 ~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 217 KGVLLVGPPGTGKTLL 232 (638)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5799999999999975
No 387
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.16 E-value=0.77 Score=43.12 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=24.2
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 179 (473)
+.-+++.+++|+|||...+-.+...+.. +.++++++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--------Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--------GNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--------CCcEEEEE
Confidence 4567889999999997644433333322 55677776
No 388
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=90.14 E-value=0.79 Score=44.85 Aligned_cols=64 Identities=23% Similarity=0.235 Sum_probs=39.4
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHh-cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 111 MQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 111 ~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
++.+.+.++ +.+.+.+.+..+. .+.+++++++||+|||.. +-.++..+ . ...+++++-.+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i-~-------~~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALV-A-------PDERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccC-C-------CCCcEEEECCcceec
Confidence 444555554 4566777666555 466899999999999973 22232222 1 134567777776763
No 389
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.12 E-value=2.2 Score=43.62 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=55.5
Q ss_pred HHHHHHhc-----CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCce
Q 012013 128 QGWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202 (473)
Q Consensus 128 ~~i~~i~~-----~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~ 202 (473)
..++.++. +.-+++.+++|+|||+..+. ++..+... +.+++++..- +-..|+...+.+++-...
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq-~a~~~a~~-------g~kvlYvs~E-Es~~qi~~ra~rlg~~~~-- 149 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQ-VACQLAKN-------QMKVLYVSGE-ESLQQIKMRAIRLGLPEP-- 149 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHH-HHHHHHhc-------CCcEEEEECc-CCHHHHHHHHHHcCCChH--
Confidence 34555554 45678889999999976443 33333221 3468888753 555677766666542110
Q ss_pred EEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhh
Q 012013 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (473)
Q Consensus 203 ~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~ 260 (473)
...+.. -.+.+.+...+.. .+.++||||.+..+..
T Consensus 150 ~l~~~~------------------e~~~~~I~~~i~~-----~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 150 NLYVLS------------------ETNWEQICANIEE-----ENPQACVIDSIQTLYS 184 (454)
T ss_pred HeEEcC------------------CCCHHHHHHHHHh-----cCCcEEEEecchhhcc
Confidence 000000 0123444444433 2467899999998753
No 390
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=90.05 E-value=1 Score=46.10 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHhc------C----CcEEEEccCCCChhHHhH-HHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 012013 120 FEPTPIQAQGWPMALK------G----RDLIGIAETGSGKTLAYL-LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~------~----~~~l~~a~TGsGKT~~~~-l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~ 188 (473)
..+-|||.-++..+.- + +..+|..|-+-|||..+. +.+...+... ..+..+.|++|+.+-+.+.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANS 134 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHh
Confidence 3678999999988772 1 257888999999996533 2222222222 2367799999999888888
Q ss_pred HHHHHHh
Q 012013 189 QQESTKF 195 (473)
Q Consensus 189 ~~~~~~~ 195 (473)
...++.-
T Consensus 135 F~~ar~m 141 (546)
T COG4626 135 FNPARDM 141 (546)
T ss_pred hHHHHHH
Confidence 7777654
No 391
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.03 E-value=1.8 Score=45.13 Aligned_cols=67 Identities=30% Similarity=0.358 Sum_probs=53.3
Q ss_pred EEEEeCChHHHHHHHHHHHh----C-CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccccC-CCCCCCCE
Q 012013 316 ILIFMDTKKGCDQITRQLRM----D-GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAARG-LDVKDVKY 384 (473)
Q Consensus 316 ~lVf~~~~~~~~~l~~~L~~----~-~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-----~~~~G-idi~~v~~ 384 (473)
+||+++|++-|..+++.+.. . ++.+..++|+++...+...++ .| .+|||||+ .+.++ +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 89999999999998888753 2 567899999998877664444 46 99999994 45566 88888888
Q ss_pred EE
Q 012013 385 VI 386 (473)
Q Consensus 385 Vi 386 (473)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 87
No 392
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.01 E-value=1.1 Score=45.91 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.6
Q ss_pred cEEEEccCCCChhHHhHH
Q 012013 138 DLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (473)
.+++.+|+|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999986543
No 393
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.97 E-value=1.4 Score=46.47 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=14.5
Q ss_pred cEEEEccCCCChhHHhHH
Q 012013 138 DLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (473)
.+|+.+|.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358899999999987543
No 394
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=89.96 E-value=0.78 Score=46.40 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.0
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
.+++++++|+|||++..
T Consensus 97 vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAA 113 (437)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57788999999998744
No 395
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.76 E-value=1.5 Score=44.63 Aligned_cols=38 Identities=18% Similarity=0.058 Sum_probs=23.2
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
..+++.+|+|+|||... ..+...+... ..+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~-----~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQN-----EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHh-----CCCCeEEEEEH
Confidence 35889999999999752 2333333331 11456777654
No 396
>PRK14701 reverse gyrase; Provisional
Probab=89.74 E-value=1.5 Score=51.60 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=52.8
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHh------CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 012013 312 DGSRILIFMDTKKGCDQITRQLRM------DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 372 (473)
Q Consensus 312 ~~~~~lVf~~~~~~~~~l~~~L~~------~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~ 372 (473)
.+.++||.+||++-+..+.+.|+. .+..+..+||+++..++..+++.+.+|..+|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 455899999999999999888875 2456788999999999999999999999999999954
No 397
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=89.69 E-value=1.8 Score=42.61 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=20.4
Q ss_pred HhcCC---cEEEEccCCCChhHHhHHHHHHHHhc
Q 012013 133 ALKGR---DLIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 133 i~~~~---~~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
+.+++ -+++.+|.|+|||..+. .+...++.
T Consensus 39 ~~~grl~ha~L~~G~~G~GKttlA~-~lA~~Llc 71 (351)
T PRK09112 39 YREGKLHHALLFEGPEGIGKATLAF-HLANHILS 71 (351)
T ss_pred HHcCCCCeeEeeECCCCCCHHHHHH-HHHHHHcC
Confidence 34454 47889999999997643 44555554
No 398
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=89.67 E-value=3.1 Score=40.44 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHhc--CC---cEEEEccCCCChhHHhHHHHHHHHhcCCC-C--------------CCCCCCEEEEEcCc
Q 012013 122 PTPIQAQGWPMALK--GR---DLIGIAETGSGKTLAYLLPAIVHVNAQPF-L--------------APGDGPIVLVLAPT 181 (473)
Q Consensus 122 ~~~~Q~~~i~~i~~--~~---~~l~~a~TGsGKT~~~~l~~l~~~~~~~~-~--------------~~~~~~~vlil~Pt 181 (473)
++|||...|..+.. ++ .+++.+|.|+|||..+.. +...++.... . ..+..|-+.++.|+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~ 80 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPL 80 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecc
Confidence 37889888888774 23 578899999999986543 3334433211 0 12335778888884
No 399
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=89.67 E-value=2 Score=41.60 Aligned_cols=44 Identities=27% Similarity=0.304 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHhc----CC---cEEEEccCCCChhHHhHHHHHHHHhc
Q 012013 119 FFEPTPIQAQGWPMALK----GR---DLIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~----~~---~~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
+..++|||..++..+.. ++ -+++.+|.|.||+..+. .+...++.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~-~lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL-ALAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHhC
Confidence 35689999999987663 33 47889999999997644 34444444
No 400
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.64 E-value=0.61 Score=48.21 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.8
Q ss_pred EEEEccCCCChhHHhH
Q 012013 139 LIGIAETGSGKTLAYL 154 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~ 154 (473)
+++.+|.|+|||+++.
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4899999999998754
No 401
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.56 E-value=1.2 Score=48.61 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=13.9
Q ss_pred EEEEccCCCChhHHhHH
Q 012013 139 LIGIAETGSGKTLAYLL 155 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l 155 (473)
+|+.+|.|+|||.++.+
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 48899999999986443
No 402
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=89.53 E-value=0.34 Score=51.63 Aligned_cols=49 Identities=18% Similarity=0.233 Sum_probs=37.3
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
++++++||||||||..+++|-+..+ ...+||+=|--|+........++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~----------~gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF----------KGSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC----------CCCEEEEeCCchHHHHHHHHHHhC
Confidence 4889999999999999999976553 224888888888877665555543
No 403
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.44 E-value=1.5 Score=46.21 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.3
Q ss_pred EEEEccCCCChhHHhHH
Q 012013 139 LIGIAETGSGKTLAYLL 155 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l 155 (473)
+++.+|.|+|||.++.+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~ 54 (584)
T PRK14952 38 YLFSGPRGCGKTSSARI 54 (584)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58899999999987554
No 404
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=89.41 E-value=3.2 Score=37.01 Aligned_cols=71 Identities=27% Similarity=0.277 Sum_probs=49.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc-----c-ccCCCCCCC
Q 012013 313 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV-----A-ARGLDVKDV 382 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~-----~-~~Gidi~~v 382 (473)
..++||.+++...+...+..++. .++.+..++|+.+..+....+. +...|+|+|.- + ..-.+++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 34899999999988887766644 3677888999888765543332 67789999941 1 223567778
Q ss_pred CEEEE
Q 012013 383 KYVIN 387 (473)
Q Consensus 383 ~~Vi~ 387 (473)
.++|.
T Consensus 145 ~~lIv 149 (203)
T cd00268 145 KYLVL 149 (203)
T ss_pred CEEEE
Confidence 87763
No 405
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=89.22 E-value=1.3 Score=46.69 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.2
Q ss_pred cEEEEccCCCChhHHhHH
Q 012013 138 DLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (473)
.+|+.+|.|+|||..+.+
T Consensus 48 a~L~~Gp~GvGKTt~Ar~ 65 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARI 65 (598)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 588999999999987554
No 406
>PTZ00146 fibrillarin; Provisional
Probab=89.17 E-value=7.4 Score=37.00 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHHHhcC--------CcEEEEccCCCChhHH
Q 012013 119 FFEPTPIQAQGWPMALKG--------RDLIGIAETGSGKTLA 152 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~--------~~~l~~a~TGsGKT~~ 152 (473)
|..-.|++++.-.+++.+ .+.|+-.-+|+|=|+.
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~ 148 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVS 148 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHH
Confidence 344466677666666543 2457777788886644
No 407
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=89.16 E-value=0.65 Score=44.90 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=16.9
Q ss_pred HhcCCcEEEEccCCCChhHH
Q 012013 133 ALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~ 152 (473)
+..+.+++++++||||||+.
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 44678999999999999974
No 408
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=89.15 E-value=0.46 Score=47.49 Aligned_cols=46 Identities=28% Similarity=0.445 Sum_probs=32.4
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 012013 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~ 186 (473)
-...+++++.+.||||||.+ +..++..+..+ +.+++|.=|.-+...
T Consensus 12 ~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~-------g~~~iI~D~kg~~~~ 57 (386)
T PF10412_consen 12 DSENRHILIIGATGSGKTQA-IRHLLDQIRAR-------GDRAIIYDPKGEFTE 57 (386)
T ss_dssp GGGGG-EEEEE-TTSSHHHH-HHHHHHHHHHT-------T-EEEEEEETTHHHH
T ss_pred chhhCcEEEECCCCCCHHHH-HHHHHHHHHHc-------CCEEEEEECCchHHH
Confidence 34567999999999999974 66777777664 567888888766644
No 409
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=89.13 E-value=4 Score=39.54 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.8
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
+-+++++|+|+|||+..
T Consensus 115 ~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 115 FVILVVGVNGVGKTTTI 131 (318)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45677899999999863
No 410
>PHA02535 P terminase ATPase subunit; Provisional
Probab=89.09 E-value=1.6 Score=45.26 Aligned_cols=86 Identities=15% Similarity=0.084 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
+++...+.|...-...+.+||+.-+..-...+.-++.-.==.|||..|..-++..++.. +...++|+|+++.|
T Consensus 123 ~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~~-------G~nqiflSas~~QA 195 (581)
T PHA02535 123 ISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALLT-------GRNQIFLSASKAQA 195 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHhc-------CCceEEECCCHHHH
Confidence 56666666666555678999998775522233333333344689998777776666542 55689999999999
Q ss_pred HHHHHHHHHhccC
Q 012013 186 VQIQQESTKFGAS 198 (473)
Q Consensus 186 ~q~~~~~~~~~~~ 198 (473)
.+..+.+..+...
T Consensus 196 ~~f~~yi~~~a~~ 208 (581)
T PHA02535 196 HVFKQYIIAFARE 208 (581)
T ss_pred HHHHHHHHHHHHh
Confidence 9888888887543
No 411
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=89.08 E-value=1.1 Score=47.71 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=38.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH--HHHHHHHHHHHhccC
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE--LAVQIQQESTKFGAS 198 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~--La~q~~~~~~~~~~~ 198 (473)
..++++.++||+|||..+. .++...... +..++++=|--. |...+...+++.+..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~-~l~~q~i~~-------g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAE-LLITQDIRR-------GDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCcEEEECCCCCCHHHHHH-HHHHHHHHc-------CCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 4689999999999997754 344444432 456777777643 777777777777644
No 412
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.06 E-value=25 Score=34.74 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=14.2
Q ss_pred CcEEEEccCCCChhHH
Q 012013 137 RDLIGIAETGSGKTLA 152 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (473)
+.+++.+|+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 5799999999999963
No 413
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.91 E-value=1.2 Score=44.63 Aligned_cols=18 Identities=33% Similarity=0.206 Sum_probs=14.8
Q ss_pred cEEEEccCCCChhHHhHH
Q 012013 138 DLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (473)
.+++.+|.|+|||.++.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 378899999999987554
No 414
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=88.88 E-value=1.2 Score=41.63 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.2
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
++++.+|+|.|||..+.
T Consensus 54 HvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 54 HVLLFGPPGLGKTTLAH 70 (332)
T ss_pred eEEeeCCCCCcHHHHHH
Confidence 68999999999997433
No 415
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.86 E-value=2.2 Score=44.45 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=14.6
Q ss_pred cEEEEccCCCChhHHhHH
Q 012013 138 DLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (473)
-+++.+|.|+|||+++.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358899999999986554
No 416
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.79 E-value=4.5 Score=41.52 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=71.1
Q ss_pred cCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchH---Hhh
Q 012013 144 ETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ 220 (473)
Q Consensus 144 ~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~~ 220 (473)
-.++||+..-++++.+.+... -.|.+||.+-+.+-|.|.+.++.. ..++.+.++++..+...... .++
T Consensus 365 lvF~gse~~K~lA~rq~v~~g------~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e~~~~qrde~~~~FR 435 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASG------FKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGERSQKQRDETMERFR 435 (593)
T ss_pred heeeecchhHHHHHHHHHhcc------CCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecccchhHHHHHHHHHh
Confidence 357888887777666555442 367789999999999999998873 44688999999865433322 222
Q ss_pred -cCCcEEEeChHHHHHHHHccCccccceeEEeecchh
Q 012013 221 -KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (473)
Q Consensus 221 -~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 256 (473)
....++||| +.+.++ .++..+.+||-++.-
T Consensus 436 ~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 436 IGKIWVLICT-----DLLARG-IDFKGVNLVINYDFP 466 (593)
T ss_pred ccCeeEEEeh-----hhhhcc-ccccCcceEEecCCC
Confidence 246899999 777776 668899999997664
No 417
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=88.78 E-value=1.4 Score=46.55 Aligned_cols=57 Identities=21% Similarity=0.280 Sum_probs=40.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcH--HHHHHHHHHHHHhccCCC
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR--ELAVQIQQESTKFGASSK 200 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~--~La~q~~~~~~~~~~~~~ 200 (473)
..++++.++||+|||..+.+.+.+.+.. +..++++=|-. ++...+...+++.+....
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~--------g~~vi~fDpkgD~el~~~~~~~~~~~GR~~~ 238 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR--------GDVVIVFDPKGDADLLKRMYAEAKRAGRLDE 238 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCCCCHHHHHHHHHHHHHhCCCCc
Confidence 4689999999999998755544444432 56688888865 577778888888776433
No 418
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=88.75 E-value=2.7 Score=44.72 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=54.8
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 012013 311 MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 371 (473)
Q Consensus 311 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~ 371 (473)
...+.+||.+|++.-+....+.|+..++.+..+|+.++..++..++.....+..+||++|.
T Consensus 51 ~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 51 LLKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 3456789999999999988889999999999999999999999999999999999999883
No 419
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.73 E-value=3.5 Score=45.01 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.4
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
.++++.+|+|+|||..+.
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 489999999999998643
No 420
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=88.62 E-value=2.3 Score=44.73 Aligned_cols=108 Identities=19% Similarity=0.132 Sum_probs=64.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC--CceEEEEEcCccCcc
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS--KIKSTCIYGGVPKGP 214 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~--~~~~~~~~gg~~~~~ 214 (473)
+-.++..|==.|||.... +++..+... -.+.++++++|.+..++.+.+++..+.... .-.+..+.| ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I-- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI-- 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--
Confidence 567888999999998644 666555432 127889999999999999998888754321 111212222 111
Q ss_pred chHHhhcC--CcEEEeChHHHHHHHHccCccccceeEEeecchhhhhh
Q 012013 215 QVRDLQKG--VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (473)
Q Consensus 215 ~~~~~~~~--~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~ 260 (473)
.-....+ ..|.++|. -..+...=..++++|||||+.+.+
T Consensus 326 -~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 326 -SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred -EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH
Confidence 0011222 25666541 111111123689999999997654
No 421
>PHA00012 I assembly protein
Probab=88.59 E-value=1.5 Score=41.98 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhc
Q 012013 139 LIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
.++.+..|+|||+.++.-++..+..
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4788999999999877666655544
No 422
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.52 E-value=1.7 Score=38.57 Aligned_cols=52 Identities=25% Similarity=0.259 Sum_probs=32.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~ 188 (473)
+|+-.-+++|.|+||++ ++.++.++.....-.-.-...-+--+|+.+||..+
T Consensus 26 ~g~iTs~IGPNGAGKST--LLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 26 KGGITSIIGPNGAGKST--LLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred CCceeEEECCCCccHHH--HHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 46667889999999997 77788777653210000012234457888998543
No 423
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.46 E-value=2 Score=44.81 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=14.2
Q ss_pred EEEEccCCCChhHHhHH
Q 012013 139 LIGIAETGSGKTLAYLL 155 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l 155 (473)
+++.+|.|+|||..+.+
T Consensus 41 ~Lf~Gp~GvGKTTlAr~ 57 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRL 57 (546)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999986543
No 424
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.45 E-value=4.8 Score=40.69 Aligned_cols=69 Identities=22% Similarity=0.349 Sum_probs=50.5
Q ss_pred CeE-EEEeCChHHHHHHHHH---H-HhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec--cc----ccCCCCCCC
Q 012013 314 SRI-LIFMDTKKGCDQITRQ---L-RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD--VA----ARGLDVKDV 382 (473)
Q Consensus 314 ~~~-lVf~~~~~~~~~l~~~---L-~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~--~~----~~Gidi~~v 382 (473)
+++ ||.|+|++.|..+... | +..++.++++||+.+..++..-++ -...|+|||. ++ -.++|+..+
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceee
Confidence 354 6778999887766544 4 345888999999999988766655 4566999994 22 247888888
Q ss_pred CEEE
Q 012013 383 KYVI 386 (473)
Q Consensus 383 ~~Vi 386 (473)
+++|
T Consensus 372 S~LV 375 (731)
T KOG0339|consen 372 SYLV 375 (731)
T ss_pred eEEE
Confidence 8866
No 425
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=88.42 E-value=0.9 Score=42.68 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=37.0
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 198 (473)
.++.+++.+++|+|||+-.+-.+...+.. +-++++++- .+...++.+.+..|+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--------ge~vlyvs~-~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--------GEPVLYVST-EESPEELLENARSFGWD 76 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--------CCcEEEEEe-cCCHHHHHHHHHHcCCC
Confidence 45788999999999997544333333332 556777754 56777778888776533
No 426
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=88.36 E-value=0.9 Score=49.10 Aligned_cols=17 Identities=35% Similarity=0.286 Sum_probs=14.4
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
++++.+|+|+|||..+.
T Consensus 54 slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 54 SLILYGPPGVGKTTLAR 70 (725)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 78999999999997533
No 427
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=88.32 E-value=0.68 Score=45.27 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=14.2
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
+-+++.+|.|+|||+.+-
T Consensus 149 lgllL~GPPGcGKTllAr 166 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCE 166 (413)
T ss_pred eEEEeeCCCCCCHHHHHH
Confidence 356778999999998543
No 428
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=88.26 E-value=0.65 Score=49.41 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=37.9
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.++++.||||+|||..+++|.+... +..++|+=|.-|+........++.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~----------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKW----------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcC----------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5789999999999999999975432 234888889999987666655554
No 429
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=88.16 E-value=1.1 Score=38.69 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=17.3
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhc
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
.+++.+|.|+||+..+. .++..++.
T Consensus 21 a~L~~G~~g~gk~~~a~-~~a~~ll~ 45 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLAL-AFARALLC 45 (162)
T ss_dssp EEEEECSTTSSHHHHHH-HHHHHHC-
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHcC
Confidence 46889999999997643 44455544
No 430
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.16 E-value=1.2 Score=48.60 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
.+.+++.+|+|+|||+.
T Consensus 487 ~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLL 503 (733)
T ss_pred CceEEEECCCCCCHHHH
Confidence 35689999999999974
No 431
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=88.16 E-value=0.49 Score=50.43 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=38.2
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.++++.||||||||..+++|-|.... ..+||+=|--|+........+++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~----------~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWP----------GSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCC----------CCEEEEeCcchHHHHHHHHHHhC
Confidence 58899999999999999999876532 34888888888877666655554
No 432
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.15 E-value=1.5 Score=40.02 Aligned_cols=44 Identities=27% Similarity=0.144 Sum_probs=24.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 181 (473)
++-+.+.+++|+|||..++..+...+.... ..+....++++..-
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~--~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGE--LGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccc--cCCCcceEEEEecC
Confidence 456788899999999764433333222210 01123567777653
No 433
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.99 E-value=0.49 Score=49.77 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.0
Q ss_pred cEEEEccCCCChhHHhHH
Q 012013 138 DLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (473)
.+|+.+|.|+|||.++.+
T Consensus 40 a~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARI 57 (624)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 577899999999987554
No 434
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.94 E-value=3 Score=46.15 Aligned_cols=18 Identities=39% Similarity=0.351 Sum_probs=15.5
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
.++++.+|+|+|||..+.
T Consensus 201 ~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 489999999999998654
No 435
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=87.83 E-value=0.46 Score=47.95 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=32.1
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~ 186 (473)
...+++++.|+||+|||.. +..++..+... +.+++|+=|..++..
T Consensus 40 ~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~-------~~~~vi~D~kg~~~~ 84 (410)
T cd01127 40 AEEAHTMIIGTTGTGKTTQ-IRELLASIRAR-------GDRAIIYDPNGGFVS 84 (410)
T ss_pred hhhccEEEEcCCCCCHHHH-HHHHHHHHHhc-------CCCEEEEeCCcchhH
Confidence 3457899999999999975 44455554442 456888888877654
No 436
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=87.77 E-value=1.6 Score=47.06 Aligned_cols=71 Identities=23% Similarity=0.191 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~ 197 (473)
.+++-|++++... ...++|.|..|||||.+..-- +.++...... ....+|.++=|+.-|.++.+++.+...
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~R-ia~li~~~~v---~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTER-IAYLIAAGGV---DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHH-HHHHHHcCCc---ChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999999776 567888999999999884443 4444443211 123488888999999999999988753
No 437
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=87.73 E-value=2.3 Score=45.48 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=50.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHh-----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-----cccc-CCCCCC
Q 012013 313 GSRILIFMDTKKGCDQITRQLRM-----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAAR-GLDVKD 381 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-----~~~~-Gidi~~ 381 (473)
..++||.|+|++-|..+++.+.. .++.+..+||+.+...+...+ .....|+|+|. .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchhh
Confidence 34799999999999988877653 267888999998766544333 24578999993 2222 467778
Q ss_pred CCEEE
Q 012013 382 VKYVI 386 (473)
Q Consensus 382 v~~Vi 386 (473)
+.+||
T Consensus 150 l~~lV 154 (629)
T PRK11634 150 LSGLV 154 (629)
T ss_pred ceEEE
Confidence 88776
No 438
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=87.73 E-value=1.3 Score=41.77 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCcEEEEccCCCChhHHhH
Q 012013 127 AQGWPMALKGRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 127 ~~~i~~i~~~~~~l~~a~TGsGKT~~~~ 154 (473)
.+++..+..++++++.+|+|+|||..+.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 3445566678999999999999998643
No 439
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=87.67 E-value=2.2 Score=43.26 Aligned_cols=38 Identities=29% Similarity=0.160 Sum_probs=23.4
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 179 (473)
.|.-+++.|++|+|||..++--+......+ +..|++++
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~-------g~~v~~fS 230 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALRE-------GKPVLFFS 230 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEE
Confidence 345677889999999975443332333222 45577776
No 440
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=87.66 E-value=1.1 Score=48.85 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=54.6
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 117 ~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.++.+.+|-|.+++..-++-....+++|+|+|||-.+.- ++.-+... ...++++|++.+..-.+|..+.+.+.
T Consensus 734 ~n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-il~~lyhn-----~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 734 KNQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYHN-----SPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred cchhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-hhhhhhhc-----CCCcceEEEEecccchhHHHHHHHhc
Confidence 445677999999998888889999999999999976543 33333322 12688999999887778877766654
No 441
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=87.62 E-value=3.9 Score=43.83 Aligned_cols=124 Identities=14% Similarity=0.066 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCc
Q 012013 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (473)
Q Consensus 122 ~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~ 201 (473)
+-++|++.+..++....++++...|.|=-- ++.-+..+... .+..+|+|- +.+.-.+ .+..-.+....
T Consensus 14 lL~Ye~qv~~~ll~~d~~L~V~a~GLsl~~--l~~~~l~~~s~------~~sL~LvLN-~~~~ee~---~f~s~lk~~~~ 81 (892)
T KOG0442|consen 14 LLEYEQQVLLELLEADGNLLVLAPGLSLLR--LVAELLILFSP------PGSLVLVLN-TQEAEEE---YFSSKLKEPLV 81 (892)
T ss_pred cchhHHHHHHhhhcccCceEEecCCcCHHH--HHHHHHHHhCC------ccceEEEec-CchhhHH---HHHHhcCcCCC
Confidence 578899999888855555555566766221 11111111221 144555554 4444433 22222222111
Q ss_pred eEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhh
Q 012013 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (473)
Q Consensus 202 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~ 260 (473)
.+.......... +.+.-...|.++|+-.|+-.+..+.....+++.++++-||.+.+
T Consensus 82 --t~~~s~ls~~~R-~~~Yl~GGv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~e 137 (892)
T KOG0442|consen 82 --TEDPSELSVNKR-RSKYLEGGVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISE 137 (892)
T ss_pred --ccChhhcchhhh-HHhhhcCCeEEeeeceeeeehhcCccchhHcceEEEechhhhhh
Confidence 111111122112 22222346888888777766666778888999999999997654
No 442
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=87.52 E-value=1.9 Score=39.36 Aligned_cols=46 Identities=24% Similarity=0.251 Sum_probs=25.4
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 190 (473)
.+++.+|+|+|||-. +..+...+... ..+.+|+++.. .+......+
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~-----~~~~~v~y~~~-~~f~~~~~~ 81 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ-----HPGKRVVYLSA-EEFIREFAD 81 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH-----CTTS-EEEEEH-HHHHHHHHH
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc-----cccccceeecH-HHHHHHHHH
Confidence 478899999999973 33333333321 11456777644 344443333
No 443
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.46 E-value=1.3 Score=46.82 Aligned_cols=18 Identities=33% Similarity=0.206 Sum_probs=14.9
Q ss_pred cEEEEccCCCChhHHhHH
Q 012013 138 DLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (473)
.+|+.+|.|+|||.++.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999987553
No 444
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.27 E-value=0.81 Score=39.04 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=56.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccch
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (473)
..+.+.+++|+|||+. ++-+...+.... -...=|++| ++++=++..+++++.+..|.......
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~g------~kvgGf~t~----------EVR~gGkR~GF~Ivdl~tg~~~~la~ 68 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREKG------YKVGGFITP----------EVREGGKRIGFKIVDLATGEEGILAR 68 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhcC------ceeeeEEee----------eeecCCeEeeeEEEEccCCceEEEEE
Confidence 3578899999999975 555555555431 111234444 23344445556666655443221111
Q ss_pred HHhhcCCcEEEeChHHHHHHHHcc-----CccccceeEEeecchhhhh--hCCCHHHHHHHHh
Q 012013 217 RDLQKGVEIVIATPGRLIDMLESH-----NTNLRRVTYLVLDEADRML--DMGFEPQIKKILS 272 (473)
Q Consensus 217 ~~~~~~~~Iiv~Tp~~l~~~l~~~-----~~~l~~~~~vVvDEah~l~--~~~~~~~~~~i~~ 272 (473)
... ...-|+-+....+.++.- .-.+..-+++|+||+--|- ...|...++.++.
T Consensus 69 ~~~---~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~ 128 (179)
T COG1618 69 VGF---SRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLK 128 (179)
T ss_pred cCC---CCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhc
Confidence 100 111122221112222110 0112346899999998653 3346666666654
No 445
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=87.19 E-value=0.61 Score=49.32 Aligned_cols=50 Identities=24% Similarity=0.376 Sum_probs=38.1
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
.++++.||||||||..+++|-+... ...++|+=|.-|++......-++.+
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~----------~gS~VV~DpKgE~~~~Ta~~R~~~G 261 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY----------GGPLVCLDPSTEVAPMVCEHRRQAG 261 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC----------CCCEEEEEChHHHHHHHHHHHHHcC
Confidence 5789999999999999999964432 2348888999999876665555543
No 446
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=87.18 E-value=1.3 Score=40.56 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=33.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
+..+++.+++|+|||..++-.+...+.. +.++++++-. +-..++.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--------g~~~~y~s~e-~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--------GEKAMYISLE-EREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEECC-CCHHHHHHHHHHcC
Confidence 4567888999999997544333333322 5567777653 45667777776654
No 447
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=86.91 E-value=1.2 Score=41.70 Aligned_cols=38 Identities=29% Similarity=0.181 Sum_probs=25.0
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
+.-+++.|.||.|||..++-.+...+... +..|++++.
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-------~~~vly~Sl 56 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNG-------GYPVLYFSL 56 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTT-------SSEEEEEES
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhc-------CCeEEEEcC
Confidence 34577789999999976554444444432 467888875
No 448
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=86.85 E-value=1.4 Score=44.82 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=52.8
Q ss_pred EEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc-----cccC----CCCCCC
Q 012013 316 ILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV-----AARG----LDVKDV 382 (473)
Q Consensus 316 ~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~-----~~~G----idi~~v 382 (473)
.|||++|++-|..+...|.. .++.+..|.|+|+...++.+++. ...|+|||.- +.++ =++.++
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 89999999999999998853 58899999999999998888876 6679999952 1111 145667
Q ss_pred CEEE
Q 012013 383 KYVI 386 (473)
Q Consensus 383 ~~Vi 386 (473)
.++|
T Consensus 342 kcLV 345 (731)
T KOG0347|consen 342 KCLV 345 (731)
T ss_pred eEEE
Confidence 7766
No 449
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=1.3 Score=46.70 Aligned_cols=52 Identities=25% Similarity=0.440 Sum_probs=32.3
Q ss_pred EEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhC
Q 012013 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261 (473)
Q Consensus 205 ~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~ 261 (473)
...||......++--++ .-|=+-|++++.-+...... =-++++||+|.|...
T Consensus 381 ~sLGGvrDEAEIRGHRR--TYIGamPGrIiQ~mkka~~~---NPv~LLDEIDKm~ss 432 (782)
T COG0466 381 ISLGGVRDEAEIRGHRR--TYIGAMPGKIIQGMKKAGVK---NPVFLLDEIDKMGSS 432 (782)
T ss_pred EecCccccHHHhccccc--cccccCChHHHHHHHHhCCc---CCeEEeechhhccCC
Confidence 34566655444433222 34556799999887764332 126999999998654
No 450
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=86.64 E-value=5.8 Score=38.59 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=40.5
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEe-----cCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 012013 311 MDGSRILIFMDTKKGCDQITRQLRMDGWPALSI-----HGDKSQAERDWVLSEFKAGKSPIMTATD 371 (473)
Q Consensus 311 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i-----hg~~~~~~r~~~~~~f~~g~~~iLvaT~ 371 (473)
..+.+++.||. ...-+.+.+.|++.|+.+... |-..+..+-+.+....+... +||+|.
T Consensus 225 l~~~~v~a~sG-Ig~P~~F~~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~--~iltTe 287 (326)
T PF02606_consen 225 LKGKPVLAFSG-IGNPERFFDTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAG--IILTTE 287 (326)
T ss_pred ccCCeeEEEEE-cCChHHHHHHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhcccc--eEEecH
Confidence 34567888775 455677777888888776532 66777777777777766555 888883
No 451
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=86.55 E-value=0.69 Score=49.16 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=44.6
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHH--hcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 012013 107 PDYVMQEISKAGFFEPTPIQAQGWPMA--LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (473)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~Q~~~i~~i--~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~L 184 (473)
++.+.+.+++.+-. .++..-.+|.. ...+++++.+.||||||.+ +.-++..+... +.++||.=|.-+.
T Consensus 156 ~~~l~k~lk~~~~~--s~i~I~gvPip~~~E~~H~li~GttGSGKS~~-i~~LL~~ir~R-------GdrAIIyD~~GeF 225 (732)
T PRK13700 156 PKDVARMLKKDGKD--SDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEV-IRRLANYARQR-------GDMVVIYDRSGEF 225 (732)
T ss_pred HHHHHHHHHhcCCC--CCeeEccccCCcchhhcceEEeCCCCCCHHHH-HHHHHHHHHHc-------CCeEEEEeCCCch
Confidence 35566666665433 44444455543 3568999999999999986 55666666543 4556666665555
Q ss_pred HH
Q 012013 185 AV 186 (473)
Q Consensus 185 a~ 186 (473)
..
T Consensus 226 v~ 227 (732)
T PRK13700 226 VK 227 (732)
T ss_pred HH
Confidence 43
No 452
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=86.39 E-value=1.5 Score=45.92 Aligned_cols=19 Identities=26% Similarity=0.174 Sum_probs=15.2
Q ss_pred CcEEEEccCCCChhHHhHH
Q 012013 137 RDLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (473)
+.+++.||.|+|||..+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578999999999986543
No 453
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.36 E-value=1.3 Score=46.79 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=15.6
Q ss_pred ccceeEEeecchhhhhhCCC
Q 012013 244 LRRVTYLVLDEADRMLDMGF 263 (473)
Q Consensus 244 l~~~~~vVvDEah~l~~~~~ 263 (473)
..+++++||||+|+|....|
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~ 141 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAF 141 (618)
T ss_pred cCCceEEEEEChhhCCHHHH
Confidence 34689999999999876543
No 454
>PRK07004 replicative DNA helicase; Provisional
Probab=86.32 E-value=1.8 Score=44.27 Aligned_cols=37 Identities=22% Similarity=0.102 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 179 (473)
|.-+++.|.+|+|||..++--+...+... +..|++++
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~-------~~~v~~fS 249 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEY-------GLPVAVFS 249 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHc-------CCeEEEEe
Confidence 34567789999999965433232222221 45566665
No 455
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.23 E-value=3.4 Score=43.94 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=15.1
Q ss_pred CcEEEEccCCCChhHHhHH
Q 012013 137 RDLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (473)
..+|+.+|.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 3578999999999987443
No 456
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.08 E-value=5.6 Score=44.29 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.3
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
.+.++.+|+|+|||..+.
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 588999999999997643
No 457
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=86.04 E-value=1.7 Score=39.54 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
.+.+++.||-|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 36788889999999973
No 458
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=86.02 E-value=0.59 Score=49.80 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=35.9
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~ 192 (473)
.+++++||||||||..+++|.+... +..+||+=|--|+........
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~----------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW----------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC----------CCCEEEEeCcHHHHHHHHHHH
Confidence 5799999999999999999987542 335888889988876554444
No 459
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=85.94 E-value=5.7 Score=39.32 Aligned_cols=26 Identities=15% Similarity=0.003 Sum_probs=18.5
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcC
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQ 164 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~ 164 (473)
-.++.+|.|+||+..+. .+...++..
T Consensus 43 A~Lf~Gp~G~GK~~lA~-~~A~~Llc~ 68 (365)
T PRK07471 43 AWLIGGPQGIGKATLAY-RMARFLLAT 68 (365)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhCC
Confidence 47899999999997644 344555543
No 460
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.93 E-value=2.7 Score=43.06 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=52.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhh----cCCcEEEeChHHHHHHHHccCccccc
Q 012013 171 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLESHNTNLRR 246 (473)
Q Consensus 171 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~~~~~~l~~ 246 (473)
...++||.|-|+.-|.++...+++.+ +.+.+++|+.+..+....+. ..+.|+||| +.. ....++.+
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~~----~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT-----dVA-aRGLDi~d 409 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRKG----WPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT-----DVA-ARGLDVPD 409 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhcC----cceeeecccccHHHHHHHHHhcccCCcceEEEc-----ccc-cccCCCcc
Confidence 36789999999999998888887754 67899999887655443332 358899999 433 33456778
Q ss_pred eeEEee
Q 012013 247 VTYLVL 252 (473)
Q Consensus 247 ~~~vVv 252 (473)
+++||-
T Consensus 410 V~lVIn 415 (519)
T KOG0331|consen 410 VDLVIN 415 (519)
T ss_pred ccEEEe
Confidence 888874
No 461
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.86 E-value=1.3 Score=46.69 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=24.8
Q ss_pred ccceeEEeecchhhhhhCCCHHHHHHHHhhh
Q 012013 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274 (473)
Q Consensus 244 l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~ 274 (473)
+++...+|+|||-.-+|..-+..+++.+...
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~ 650 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRL 650 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHh
Confidence 5677899999999999888777777776653
No 462
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=85.86 E-value=1.2 Score=41.04 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=23.7
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
.++++|++|||||.. ++-++..+... -..+++++|
T Consensus 15 r~viIG~sGSGKT~l-i~~lL~~~~~~-------f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTL-IKSLLYYLRHK-------FDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHH-HHHHHHhhccc-------CCEEEEEec
Confidence 789999999999964 55555554331 244666666
No 463
>PRK10867 signal recognition particle protein; Provisional
Probab=85.69 E-value=2.4 Score=42.86 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=14.1
Q ss_pred cEEEEccCCCChhHHhHH
Q 012013 138 DLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (473)
-+++++++|+|||++..-
T Consensus 102 vI~~vG~~GsGKTTtaak 119 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467789999999986443
No 464
>PRK12608 transcription termination factor Rho; Provisional
Probab=85.67 E-value=3.1 Score=40.93 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=26.3
Q ss_pred HHHHHHHHHHh---cCCcEEEEccCCCChhHHhHHHHHHHHh
Q 012013 124 PIQAQGWPMAL---KGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (473)
Q Consensus 124 ~~Q~~~i~~i~---~~~~~l~~a~TGsGKT~~~~l~~l~~~~ 162 (473)
++-..+|+.+. .|+..+|.|+.|+|||+. +.-++..+.
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTL-l~~la~~i~ 158 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVL-LQQIAAAVA 158 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 34455776665 688999999999999975 333344443
No 465
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=85.57 E-value=0.82 Score=47.90 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=19.3
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHHH
Q 012013 133 ALKGRDLIGIAETGSGKTLAYLLPAIVH 160 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~~~l~~l~~ 160 (473)
+..|+-+.+++|+|||||+ ++-++..
T Consensus 358 i~~G~~vaIvG~SGsGKST--Ll~lL~g 383 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKST--LLMLLTG 383 (529)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhc
Confidence 3467889999999999997 3344433
No 466
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=85.51 E-value=7.1 Score=37.93 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHh----cCC---cEEEEccCCCChhHHhHHHHHHHHhcCC-CC-------------CCCCCCEEEEEcC
Q 012013 122 PTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVNAQP-FL-------------APGDGPIVLVLAP 180 (473)
Q Consensus 122 ~~~~Q~~~i~~i~----~~~---~~l~~a~TGsGKT~~~~l~~l~~~~~~~-~~-------------~~~~~~~vlil~P 180 (473)
.+|||...+..+. +++ -.++.+|.|.||+..+.. +...++... .. ..+..|-+.++.|
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~-~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA-LAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 4688888777655 333 467899999999976443 334444321 10 1233566777877
Q ss_pred c---HHHHHHHHHHHHHh---ccCCCceEEEEEcCcc
Q 012013 181 T---RELAVQIQQESTKF---GASSKIKSTCIYGGVP 211 (473)
Q Consensus 181 t---~~La~q~~~~~~~~---~~~~~~~~~~~~gg~~ 211 (473)
. ..-+.|+.+..+.+ ....+.+++.+.....
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~ 118 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAER 118 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhh
Confidence 3 12345555443332 2233455666554443
No 467
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=85.49 E-value=6.1 Score=38.05 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
..++++++|-|||||..
T Consensus 49 snsviiigprgsgkT~l 65 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTIL 65 (408)
T ss_pred CCceEEEccCCCCceEe
Confidence 46899999999999963
No 468
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=85.40 E-value=2.2 Score=40.72 Aligned_cols=55 Identities=22% Similarity=0.164 Sum_probs=31.8
Q ss_pred HHHHHHHHHh-cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCC--CCCCCEEEEEc
Q 012013 125 IQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPIVLVLA 179 (473)
Q Consensus 125 ~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~vlil~ 179 (473)
.|-+.|+.+. ++-.+++.++.|.|||+..+...+........+. ..+..+||+|.
T Consensus 77 ~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvs 134 (402)
T COG3598 77 NSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVS 134 (402)
T ss_pred cChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEE
Confidence 3555665544 4556777799999999875554444433322222 12244577765
No 469
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=85.26 E-value=3.7 Score=47.10 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=49.8
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhC----CCCe---EEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 012013 312 DGSRILIFMDTKKGCDQITRQLRMD----GWPA---LSIHGDKSQAERDWVLSEFKAGKSPIMTATD 371 (473)
Q Consensus 312 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~---~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~ 371 (473)
.+.++||.+||++-+..+++.+... ++.+ ..+||+++..++...++.+.++..+|||+|.
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp 186 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTT 186 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3568999999999999888877643 3433 3589999999999999999999999999995
No 470
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=85.19 E-value=3.9 Score=44.94 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
+..+++.+|+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 34688999999999975
No 471
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.10 E-value=8.6 Score=39.34 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHH----HhcC--------CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCC
Q 012013 104 VGFPDYVMQEISKAGFFEPTPIQAQGWPM----ALKG--------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171 (473)
Q Consensus 104 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~----i~~~--------~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 171 (473)
++.+++.++.+...|...-.|.=.+.+.. +.+- ..+++.+|.|||||..+. -+..-. +
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA--~iA~~S--------~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA--KIALSS--------D 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH--HHHhhc--------C
Confidence 46677777777777666544443333322 2221 258899999999995322 222211 2
Q ss_pred CCEEEEEcCcH
Q 012013 172 GPIVLVLAPTR 182 (473)
Q Consensus 172 ~~~vlil~Pt~ 182 (473)
-|.+=|+.|..
T Consensus 564 FPFvKiiSpe~ 574 (744)
T KOG0741|consen 564 FPFVKIISPED 574 (744)
T ss_pred CCeEEEeChHH
Confidence 56777888853
No 472
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.08 E-value=3.8 Score=45.52 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.2
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
.+.++.+|+|+|||..+.
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 488999999999998643
No 473
>PF14516 AAA_35: AAA-like domain
Probab=85.06 E-value=7.3 Score=38.03 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHhc-CCcEEEEccCCCChhHHhHHHHHHHHhc
Q 012013 123 TPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 123 ~~~Q~~~i~~i~~-~~~~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
.|...+++..+.+ |..+.|.||-.+|||.. +..++.++..
T Consensus 17 ~~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~ 57 (331)
T PF14516_consen 17 PPAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQ 57 (331)
T ss_pred hHHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHH
Confidence 3488999999887 88899999999999975 5556666654
No 474
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.87 E-value=1.5 Score=36.64 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=13.3
Q ss_pred cEEEEccCCCChhHH
Q 012013 138 DLIGIAETGSGKTLA 152 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (473)
++++.+|+|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 478999999999975
No 475
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=84.79 E-value=1.5 Score=45.27 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=36.5
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~ 197 (473)
++.+++.+++|+|||+.++-.+...+... +.++|+++- .+-..++.+.+..++-
T Consensus 21 g~~~Li~G~pGsGKT~la~qfl~~g~~~~-------ge~~lyvs~-eE~~~~l~~~~~~~G~ 74 (484)
T TIGR02655 21 GRSTLVSGTSGTGKTLFSIQFLYNGIIHF-------DEPGVFVTF-EESPQDIIKNARSFGW 74 (484)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCCEEEEEE-ecCHHHHHHHHHHcCC
Confidence 56789999999999976554444444331 345777764 3666777777777653
No 476
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=84.76 E-value=2.1 Score=42.77 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.0
Q ss_pred CcEEEEccCCCChhHHhHH
Q 012013 137 RDLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (473)
..+++.+|.|+|||..+..
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~ 55 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARA 55 (394)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3578999999999986443
No 477
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=84.73 E-value=2.5 Score=37.39 Aligned_cols=61 Identities=26% Similarity=0.275 Sum_probs=32.6
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCC--CCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
.+.-+++.|++|+|||...+-.+...+...+... .....+||++..--. ..++.+.+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 4566888999999999864433333333222211 113567888765433 556777777654
No 478
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=84.60 E-value=6.6 Score=40.25 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=49.7
Q ss_pred eEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec------ccccCCCCCCCCE
Q 012013 315 RILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD------VAARGLDVKDVKY 384 (473)
Q Consensus 315 ~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~------~~~~Gidi~~v~~ 384 (473)
++||.++|++-|..+.+.+.. .++.+..++|+.+...+...+ .+..+|+|||. .....+++..+.+
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL----RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHH----cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 699999999999888887754 356778889998876543322 35778999994 1234567777887
Q ss_pred EE
Q 012013 385 VI 386 (473)
Q Consensus 385 Vi 386 (473)
||
T Consensus 153 lV 154 (456)
T PRK10590 153 LV 154 (456)
T ss_pred EE
Confidence 76
No 479
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=84.58 E-value=4.9 Score=42.56 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=24.9
Q ss_pred cEEEeChHHHHHHHHccCccccceeEEeecchhhhh
Q 012013 224 EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (473)
Q Consensus 224 ~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~ 259 (473)
.-|=+-|+++++.|.+-... =-++.+||+|.+.
T Consensus 486 TYVGAMPGkiIq~LK~v~t~---NPliLiDEvDKlG 518 (906)
T KOG2004|consen 486 TYVGAMPGKIIQCLKKVKTE---NPLILIDEVDKLG 518 (906)
T ss_pred eeeccCChHHHHHHHhhCCC---CceEEeehhhhhC
Confidence 35567899999998875442 2368999999886
No 480
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=84.56 E-value=1.5 Score=40.15 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=29.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
.+++.+.|.||||||.. +-.++..+... .+..+||+=|.-|=+
T Consensus 23 ~~H~~I~G~TGsGKS~~-~~~ll~~l~~~------~~~~~ii~D~~GEY~ 65 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNT-VKVLLEELLKK------KGAKVIIFDPHGEYA 65 (229)
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHHhc------CCCCEEEEcCCCcch
Confidence 47899999999999976 44455555521 155688888865443
No 481
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.55 E-value=6.8 Score=43.47 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=20.1
Q ss_pred HHHHHHHHh----c--CCcEEEEccCCCChhHHh
Q 012013 126 QAQGWPMAL----K--GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 126 Q~~~i~~i~----~--~~~~l~~a~TGsGKT~~~ 153 (473)
|.+.+..+. . ..+.++.+|.|+|||..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555555543 2 248999999999999754
No 482
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=84.48 E-value=3.7 Score=42.11 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=51.0
Q ss_pred eEEEEeCChHHHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccc-cCCCCCCCC
Q 012013 315 RILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAA-RGLDVKDVK 383 (473)
Q Consensus 315 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-----~~~-~Gidi~~v~ 383 (473)
++||.|+|++-+..+++.++.. ++.+..++|+.+...+...+. ...+|+|+|. .+. ..+++.++.
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l~ 149 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDALN 149 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHCC
Confidence 6899999999999988877642 577888999998766544333 5678999993 222 356788888
Q ss_pred EEE
Q 012013 384 YVI 386 (473)
Q Consensus 384 ~Vi 386 (473)
+||
T Consensus 150 ~lV 152 (460)
T PRK11776 150 TLV 152 (460)
T ss_pred EEE
Confidence 877
No 483
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=84.46 E-value=2.1 Score=40.05 Aligned_cols=51 Identities=25% Similarity=0.140 Sum_probs=28.2
Q ss_pred HHHHHHhcC-----CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 128 QGWPMALKG-----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 128 ~~i~~i~~~-----~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
..++.++.| .-+=++++.|+|||...+-.++...+. ....+.+.+++++.-
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~--~~~~g~~~~vvyidT 80 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLP--EEIGGLGGKVVYIDT 80 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSG--GCTTSSSSEEEEEES
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcc--cccccCCCceEEEeC
Confidence 455666654 334568999999996433222222221 112234567888863
No 484
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=84.37 E-value=4.9 Score=43.83 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCChhHHhH
Q 012013 136 GRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (473)
..++++.+|+|+|||..+.
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999998643
No 485
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.05 E-value=1.2 Score=43.63 Aligned_cols=16 Identities=31% Similarity=0.575 Sum_probs=13.9
Q ss_pred CcEEEEccCCCChhHH
Q 012013 137 RDLIGIAETGSGKTLA 152 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (473)
+++++-+|+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 5789999999999964
No 486
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=84.03 E-value=1.6 Score=39.37 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=24.3
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 181 (473)
+.-+.+.+|+|+|||...+..+...... +.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--------g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--------GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEECC
Confidence 4567888999999997654433333221 4567776653
No 487
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=83.99 E-value=5.9 Score=38.19 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=13.8
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
.+++.+|+|+|||.++
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999753
No 488
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=83.94 E-value=4.4 Score=41.18 Aligned_cols=69 Identities=25% Similarity=0.293 Sum_probs=51.2
Q ss_pred CeEEEEeCChHHHHHHHHHHH----hCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----ccCCCCCCCC
Q 012013 314 SRILIFMDTKKGCDQITRQLR----MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDVK 383 (473)
Q Consensus 314 ~~~lVf~~~~~~~~~l~~~L~----~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~-----~~Gidi~~v~ 383 (473)
.++||.+++++-+..+++.+. ..+..+..++|+.+..++..++ .+..+|||+|. .+ ...+++.++.
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~ 149 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAVE 149 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccCC
Confidence 479999999998888776654 3467889999999887665544 35678999995 11 2456777888
Q ss_pred EEE
Q 012013 384 YVI 386 (473)
Q Consensus 384 ~Vi 386 (473)
+||
T Consensus 150 ~lV 152 (434)
T PRK11192 150 TLI 152 (434)
T ss_pred EEE
Confidence 777
No 489
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=83.88 E-value=19 Score=39.06 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=20.7
Q ss_pred HHHHHHHHhc-------C--------CcEEEEccCCCChhHHh
Q 012013 126 QAQGWPMALK-------G--------RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 126 Q~~~i~~i~~-------~--------~~~l~~a~TGsGKT~~~ 153 (473)
|.+|+.++.. | .++++.+|||.|||..+
T Consensus 496 Qd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELA 538 (786)
T COG0542 496 QDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELA 538 (786)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHH
Confidence 7777766543 1 25788999999999753
No 490
>PRK08506 replicative DNA helicase; Provisional
Probab=83.84 E-value=2.7 Score=43.22 Aligned_cols=49 Identities=22% Similarity=0.096 Sum_probs=28.2
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~ 193 (473)
+.-+++.|.||.|||..++ -++..+... +..|++++. ..-+.|+..++.
T Consensus 192 G~LivIaarpg~GKT~fal-~ia~~~~~~-------g~~V~~fSl-EMs~~ql~~Rll 240 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCL-NMALKALNQ-------DKGVAFFSL-EMPAEQLMLRML 240 (472)
T ss_pred CceEEEEcCCCCChHHHHH-HHHHHHHhc-------CCcEEEEeC-cCCHHHHHHHHH
Confidence 3456778999999996544 344443321 455777653 233445554443
No 491
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.77 E-value=0.85 Score=47.05 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=33.6
Q ss_pred CccCCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHH
Q 012013 96 KPVKSFRDVGFPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~ 152 (473)
-|-.+|++.+--+.+...|.-. .+..|- +-+++-. ..-..+++++|+|||||+.
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd--~~k~lGi-~~PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPD--LFKALGI-DAPSGVLLCGPPGCGKTLL 561 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHH--HHHHhCC-CCCCceEEeCCCCccHHHH
Confidence 4567899988777776666532 222222 2222221 1245799999999999974
No 492
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=83.48 E-value=2.3 Score=48.76 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=43.3
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 194 (473)
.+.+++|.|..|||||.+...-++..++... +-.-..+|||+-|++-+..+.+++.+
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~---~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG---PLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC---CCChhHeeeeeccHHHHHHHHHHHHH
Confidence 4678999999999999986666666666521 12356799999999988888777664
No 493
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=83.48 E-value=6.8 Score=41.80 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=53.5
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 012013 312 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 370 (473)
Q Consensus 312 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT 370 (473)
..+.+||.+|+++-+....+.|...++.+..+++..+..++..++....++..+++++|
T Consensus 64 ~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~t 122 (607)
T PRK11057 64 LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIA 122 (607)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEC
Confidence 35689999999999999999999999999999999999988888888999999999888
No 494
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=83.31 E-value=8.9 Score=37.89 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=30.8
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
.+.+.+.++.|+|||+ ++-++.....- ..+.++ +-.+...++++.+.++.
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~-----~~k~R~----HFh~Fm~~vh~~l~~~~ 111 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPI-----KRKRRV----HFHEFMLDVHSRLHQLR 111 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCc-----cccccc----cccHHHHHHHHHHHHHh
Confidence 4678999999999997 34343332211 112222 44567777788877764
No 495
>PRK13695 putative NTPase; Provisional
Probab=83.24 E-value=8.8 Score=33.40 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=13.7
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
.+++.++.|+|||+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998543
No 496
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=83.22 E-value=1.5 Score=46.20 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=27.2
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~ 182 (473)
..+++++.|+||||||.+ +..++..+... +.+++|+=|.-
T Consensus 175 e~~h~li~G~tGsGKs~~-i~~ll~~~~~~-------g~~~ii~D~~g 214 (566)
T TIGR02759 175 ETQHILIHGTTGSGKSVA-IRKLLRWIRQR-------GDRAIIYDKGC 214 (566)
T ss_pred cccceEEEcCCCCCHHHH-HHHHHHHHHhc-------CCeEEEEECCC
Confidence 457899999999999964 45556665443 44566666553
No 497
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.15 E-value=0.83 Score=43.21 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=17.1
Q ss_pred HhcCCcEEEEccCCCChhHH
Q 012013 133 ALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~ 152 (473)
+..++.+++++|+|+|||..
T Consensus 30 ~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHH
T ss_pred HHcCCcEEEECCCCCchhHH
Confidence 34678999999999999974
No 498
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=83.13 E-value=5.9 Score=38.43 Aligned_cols=43 Identities=19% Similarity=-0.037 Sum_probs=24.1
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
+.-+.+.+++|+|||...+-.++...... ...+.+.+++++.-
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~--~~gg~~~~~~yi~t 144 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPE--EKGGLEGKAVYIDT 144 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhcccc--ccCCCCceEEEEeC
Confidence 45677889999999975443333322211 11122346777763
No 499
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.05 E-value=3.1 Score=39.21 Aligned_cols=83 Identities=20% Similarity=0.319 Sum_probs=47.7
Q ss_pred CCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-----cEEEEccCCCChhHHhHHHHHHHHhcCCCCCC
Q 012013 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGR-----DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAP 169 (473)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~-----~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~ 169 (473)
.+|-..|++..=-+...++|+..=+. |+ -+|.+..|+ .+++-+|+|+||+..+- +...-
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVIL---PI---KFPqlFtGkR~PwrgiLLyGPPGTGKSYLAK--AVATE-------- 189 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVIL---PI---KFPQLFTGKRKPWRGILLYGPPGTGKSYLAK--AVATE-------- 189 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheee---cc---cchhhhcCCCCcceeEEEeCCCCCcHHHHHH--HHHhh--------
Confidence 45667788875555566666554221 11 134455553 47888999999996322 22211
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 170 GDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 170 ~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.....+-+.+..|+..|.-+-.++
T Consensus 190 --AnSTFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 190 --ANSTFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred --cCCceEEeehHHHHHHHhccHHHH
Confidence 113566667777877666554443
No 500
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=83.04 E-value=2.5 Score=45.86 Aligned_cols=87 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccC
Q 012013 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~ 212 (473)
+-.+.-+.+.+++|+|||...+..+...... +.+++++..-..+. .+.++.++-...
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~--------G~~v~yId~E~t~~---~~~A~~lGvDl~------------ 113 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAA--------GGVAAFIDAEHALD---PDYAKKLGVDTD------------ 113 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEECCccchh---HHHHHHcCCChh------------
Q ss_pred ccchHHhhcCCcEEEeChHHHHHHHHccCccccc--eeEEeec
Q 012013 213 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRR--VTYLVLD 253 (473)
Q Consensus 213 ~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~--~~~vVvD 253 (473)
++++..|......+..-...+.. +++||||
T Consensus 114 -----------~llv~~~~~~E~~l~~i~~lv~~~~~~LVVID 145 (790)
T PRK09519 114 -----------SLLVSQPDTGEQALEIADMLIRSGALDIVVID 145 (790)
T ss_pred -----------HeEEecCCCHHHHHHHHHHHhhcCCCeEEEEc
Done!