Query 012013
Match_columns 473
No_of_seqs 379 out of 3206
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 19:53:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.7E-64 9.2E-69 510.4 41.2 359 86-446 43-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 5.3E-59 1.8E-63 470.0 40.3 365 86-450 2-413 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.3E-54 7.7E-59 435.3 35.4 342 94-441 32-404 (410)
4 1s2m_A Putative ATP-dependent 100.0 3.1E-53 1.1E-57 425.5 34.5 343 96-444 18-389 (400)
5 3eiq_A Eukaryotic initiation f 100.0 2.3E-53 8E-58 428.2 32.0 348 93-446 34-413 (414)
6 3i5x_A ATP-dependent RNA helic 100.0 2E-52 6.8E-57 438.1 35.1 326 106-432 79-461 (563)
7 1xti_A Probable ATP-dependent 100.0 5.1E-52 1.7E-56 415.3 35.0 339 99-443 8-381 (391)
8 1hv8_A Putative ATP-dependent 100.0 3.5E-51 1.2E-55 405.3 37.2 331 98-437 5-362 (367)
9 3sqw_A ATP-dependent RNA helic 100.0 8.5E-51 2.9E-55 426.4 36.3 326 106-432 28-410 (579)
10 3fht_A ATP-dependent RNA helic 100.0 9.6E-50 3.3E-54 401.5 39.8 337 95-440 21-400 (412)
11 3pey_A ATP-dependent RNA helic 100.0 1.1E-49 3.9E-54 398.4 39.6 326 97-432 3-369 (395)
12 1fuu_A Yeast initiation factor 100.0 1.9E-52 6.5E-57 418.7 18.1 347 93-446 15-392 (394)
13 2z0m_A 337AA long hypothetical 100.0 1.3E-48 4.6E-53 382.3 33.6 309 106-434 1-336 (337)
14 3fmp_B ATP-dependent RNA helic 100.0 2.2E-50 7.4E-55 414.3 18.9 335 97-440 90-467 (479)
15 2v1x_A ATP-dependent DNA helic 100.0 5.6E-48 1.9E-52 402.3 29.5 316 98-429 18-383 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 6.7E-48 2.3E-52 397.7 29.0 316 99-430 2-353 (523)
17 3fho_A ATP-dependent RNA helic 100.0 4E-48 1.4E-52 399.3 17.8 358 74-441 93-492 (508)
18 3oiy_A Reverse gyrase helicase 100.0 3.5E-46 1.2E-50 376.1 30.1 300 110-433 10-376 (414)
19 1tf5_A Preprotein translocase 100.0 9.4E-46 3.2E-50 386.2 26.0 349 51-422 17-547 (844)
20 4a2p_A RIG-I, retinoic acid in 100.0 4E-45 1.4E-49 382.1 27.0 299 119-422 5-510 (556)
21 3tbk_A RIG-I helicase domain; 100.0 1.3E-44 4.4E-49 378.0 26.4 302 120-426 3-513 (555)
22 2va8_A SSO2462, SKI2-type heli 100.0 2.3E-43 7.7E-48 379.1 36.3 312 97-422 6-410 (715)
23 2ykg_A Probable ATP-dependent 100.0 1.7E-44 5.9E-49 387.3 26.3 308 112-424 4-520 (696)
24 4a2q_A RIG-I, retinoic acid in 100.0 2.2E-43 7.6E-48 382.7 28.9 302 116-422 243-751 (797)
25 2zj8_A DNA helicase, putative 100.0 3.6E-43 1.2E-47 377.5 29.0 308 100-421 2-388 (720)
26 2p6r_A Afuhel308 helicase; pro 100.0 3.3E-43 1.1E-47 376.7 26.4 307 100-421 2-389 (702)
27 4a2w_A RIG-I, retinoic acid in 100.0 1.1E-42 3.6E-47 381.4 26.1 302 116-422 243-751 (936)
28 3l9o_A ATP-dependent RNA helic 100.0 2.8E-43 9.6E-48 388.9 21.1 303 99-420 162-597 (1108)
29 1nkt_A Preprotein translocase 100.0 1.7E-41 6E-46 353.4 30.8 335 67-424 58-621 (922)
30 1wp9_A ATP-dependent RNA helic 100.0 1.3E-41 4.3E-46 349.0 28.5 292 121-422 9-477 (494)
31 4gl2_A Interferon-induced heli 100.0 4.5E-42 1.5E-46 368.7 23.3 294 120-419 6-517 (699)
32 2fsf_A Preprotein translocase 100.0 1.7E-41 6E-46 353.1 26.5 333 66-422 23-585 (853)
33 4ddu_A Reverse gyrase; topoiso 100.0 3.3E-41 1.1E-45 372.4 30.1 295 117-434 75-504 (1104)
34 1gku_B Reverse gyrase, TOP-RG; 100.0 1.9E-41 6.6E-46 374.4 26.3 291 116-434 53-468 (1054)
35 2xgj_A ATP-dependent RNA helic 100.0 1.2E-40 4.1E-45 365.0 29.1 289 121-428 86-508 (1010)
36 1gm5_A RECG; helicase, replica 100.0 4.6E-40 1.6E-44 349.8 21.1 313 108-436 356-712 (780)
37 4a4z_A Antiviral helicase SKI2 100.0 1.2E-38 4.2E-43 349.1 28.8 279 121-418 39-490 (997)
38 2whx_A Serine protease/ntpase/ 100.0 7.5E-40 2.6E-44 342.1 14.9 310 104-441 155-502 (618)
39 4f92_B U5 small nuclear ribonu 100.0 1.6E-38 5.5E-43 362.5 27.1 313 106-428 911-1316(1724)
40 2eyq_A TRCF, transcription-rep 100.0 1.5E-37 5.2E-42 345.3 33.2 300 104-421 586-923 (1151)
41 2oca_A DAR protein, ATP-depend 100.0 1.2E-38 4.2E-43 329.5 22.7 281 120-418 112-453 (510)
42 2fwr_A DNA repair protein RAD2 100.0 6.3E-39 2.2E-43 328.5 18.1 264 120-416 92-448 (472)
43 2jlq_A Serine protease subunit 100.0 8.6E-39 2.9E-43 324.4 17.4 298 118-443 1-337 (451)
44 4f92_B U5 small nuclear ribonu 100.0 2.8E-37 9.7E-42 352.3 29.3 307 118-428 76-481 (1724)
45 1yks_A Genome polyprotein [con 100.0 2.1E-38 7.3E-43 320.1 9.6 284 132-441 4-323 (440)
46 2wv9_A Flavivirin protease NS2 100.0 6.8E-38 2.3E-42 329.4 13.4 285 121-434 215-550 (673)
47 2xau_A PRE-mRNA-splicing facto 100.0 4.9E-37 1.7E-41 328.6 18.2 313 96-422 69-445 (773)
48 3o8b_A HCV NS3 protease/helica 100.0 8.1E-38 2.8E-42 324.0 9.7 268 120-424 216-518 (666)
49 2z83_A Helicase/nucleoside tri 100.0 4E-37 1.4E-41 312.7 13.4 268 127-420 12-313 (459)
50 3fe2_A Probable ATP-dependent 100.0 4.2E-35 1.4E-39 273.1 21.4 202 73-274 3-204 (242)
51 3dmq_A RNA polymerase-associat 100.0 3.7E-35 1.3E-39 322.1 19.6 306 120-437 152-630 (968)
52 1z63_A Helicase of the SNF2/RA 100.0 4.3E-34 1.5E-38 294.8 25.8 304 120-440 36-471 (500)
53 3h1t_A Type I site-specific re 100.0 9.3E-35 3.2E-39 305.5 20.3 275 121-409 178-545 (590)
54 2v6i_A RNA helicase; membrane, 100.0 1.3E-34 4.6E-39 291.7 20.3 256 135-417 1-288 (431)
55 3rc3_A ATP-dependent RNA helic 100.0 5.3E-33 1.8E-37 291.3 28.3 262 128-418 147-443 (677)
56 3jux_A Protein translocase sub 100.0 4E-32 1.4E-36 277.3 31.9 290 120-423 74-590 (822)
57 3mwy_W Chromo domain-containin 100.0 1.4E-32 4.8E-37 297.3 27.9 367 60-442 178-704 (800)
58 1z3i_X Similar to RAD54-like; 100.0 1.5E-31 5.2E-36 282.4 32.7 294 120-418 54-524 (644)
59 3iuy_A Probable ATP-dependent 100.0 6.2E-31 2.1E-35 242.6 20.3 183 91-274 11-195 (228)
60 1wrb_A DJVLGB; RNA helicase, D 100.0 3.2E-31 1.1E-35 248.6 17.6 187 87-273 9-201 (253)
61 3dkp_A Probable ATP-dependent 100.0 7.4E-31 2.5E-35 244.9 18.2 193 77-273 3-205 (245)
62 2jgn_A DBX, DDX3, ATP-dependen 100.0 3.3E-30 1.1E-34 229.2 19.3 168 282-449 15-182 (185)
63 3bor_A Human initiation factor 100.0 3.4E-30 1.2E-34 239.1 18.8 178 92-274 23-201 (237)
64 2oxc_A Probable ATP-dependent 100.0 6.2E-30 2.1E-34 236.2 20.2 179 90-274 15-195 (230)
65 2p6n_A ATP-dependent RNA helic 100.0 1.3E-29 4.6E-34 226.3 19.8 166 282-449 25-191 (191)
66 1q0u_A Bstdead; DEAD protein, 100.0 4.9E-30 1.7E-34 235.1 17.4 173 97-274 2-178 (219)
67 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 9.4E-30 3.2E-34 277.4 22.6 286 120-418 270-707 (1038)
68 2pl3_A Probable ATP-dependent 100.0 1.9E-29 6.4E-34 234.0 21.1 194 74-274 5-199 (236)
69 3ber_A Probable ATP-dependent 100.0 7.7E-30 2.6E-34 238.3 18.4 173 96-273 40-213 (249)
70 1vec_A ATP-dependent RNA helic 100.0 1.6E-29 5.5E-34 229.3 19.9 171 99-274 3-174 (206)
71 1qde_A EIF4A, translation init 100.0 1.9E-29 6.6E-34 231.9 20.5 176 92-273 7-182 (224)
72 3fmo_B ATP-dependent RNA helic 100.0 3.5E-29 1.2E-33 240.0 20.6 179 87-273 77-263 (300)
73 2gxq_A Heat resistant RNA depe 100.0 5.5E-29 1.9E-33 225.9 20.6 170 100-273 2-171 (207)
74 3ly5_A ATP-dependent RNA helic 100.0 5.7E-29 1.9E-33 234.2 18.7 175 99-274 52-229 (262)
75 2ipc_A Preprotein translocase 100.0 1.3E-27 4.5E-32 248.4 28.0 131 116-259 75-215 (997)
76 1t6n_A Probable ATP-dependent 100.0 1.5E-28 5.1E-33 225.4 18.3 174 95-273 10-186 (220)
77 2hjv_A ATP-dependent RNA helic 100.0 1.4E-27 4.9E-32 208.0 20.0 150 283-433 6-155 (163)
78 1t5i_A C_terminal domain of A 100.0 8.5E-28 2.9E-32 211.2 16.7 160 285-445 4-164 (172)
79 1fuk_A Eukaryotic initiation f 100.0 3.5E-28 1.2E-32 212.4 14.0 158 286-444 3-161 (165)
80 1c4o_A DNA nucleotide excision 99.9 2.1E-26 7E-31 243.0 26.6 133 297-430 422-560 (664)
81 2rb4_A ATP-dependent RNA helic 99.9 4.9E-27 1.7E-31 207.1 17.7 153 284-437 5-164 (175)
82 3eaq_A Heat resistant RNA depe 99.9 3.4E-26 1.2E-30 208.0 18.4 147 288-435 7-153 (212)
83 2d7d_A Uvrabc system protein B 99.9 2.9E-25 9.9E-30 234.2 25.7 132 297-429 428-565 (661)
84 3i32_A Heat resistant RNA depe 99.9 1.1E-25 3.9E-30 214.1 17.5 146 287-433 3-148 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 7.8E-27 2.7E-31 204.8 0.0 149 286-435 3-152 (170)
86 2vl7_A XPD; helicase, unknown 99.9 1E-21 3.5E-26 203.2 21.4 280 118-419 5-520 (540)
87 3b6e_A Interferon-induced heli 99.9 1.2E-22 4.1E-27 185.1 11.8 147 118-267 30-183 (216)
88 1z5z_A Helicase of the SNF2/RA 99.8 1.8E-20 6.2E-25 176.1 13.2 140 294-433 92-235 (271)
89 1rif_A DAR protein, DNA helica 99.8 1E-20 3.4E-25 179.9 7.2 137 120-273 112-248 (282)
90 3llm_A ATP-dependent RNA helic 99.8 1.3E-18 4.5E-23 160.6 11.1 152 109-271 49-203 (235)
91 4a15_A XPD helicase, ATP-depen 99.7 8.2E-17 2.8E-21 168.4 21.2 83 120-209 2-88 (620)
92 2fz4_A DNA repair protein RAD2 99.7 1.8E-17 6.2E-22 152.9 13.3 119 120-265 92-211 (237)
93 3crv_A XPD/RAD3 related DNA he 99.7 1.7E-16 5.9E-21 164.6 11.0 129 121-260 3-187 (551)
94 1w36_D RECD, exodeoxyribonucle 98.7 5.2E-08 1.8E-12 101.7 11.7 70 123-198 151-222 (608)
95 3upu_A ATP-dependent DNA helic 98.4 2.1E-06 7.3E-11 86.6 13.2 69 117-192 21-94 (459)
96 4b3f_X DNA-binding protein smu 98.3 6.7E-07 2.3E-11 94.3 8.2 68 121-196 189-257 (646)
97 3hgt_A HDA1 complex subunit 3; 98.3 5.1E-06 1.7E-10 78.2 12.7 122 295-421 106-238 (328)
98 2gk6_A Regulator of nonsense t 98.3 2.3E-06 7.8E-11 89.7 11.2 70 119-195 178-247 (624)
99 2xzl_A ATP-dependent helicase 98.2 4.8E-06 1.7E-10 89.3 10.6 71 119-196 358-428 (802)
100 2wjy_A Regulator of nonsense t 98.2 8.3E-06 2.8E-10 87.4 11.7 70 119-195 354-423 (800)
101 3e1s_A Exodeoxyribonuclease V, 98.1 4.3E-06 1.5E-10 86.4 7.7 65 120-192 188-252 (574)
102 3lfu_A DNA helicase II; SF1 he 98.1 0.0002 6.7E-09 75.5 20.0 71 120-196 8-78 (647)
103 2o0j_A Terminase, DNA packagin 97.2 0.0017 5.9E-08 63.1 11.1 70 121-196 163-232 (385)
104 3cpe_A Terminase, DNA packagin 97.0 0.0015 5.2E-08 67.8 8.8 73 121-199 163-235 (592)
105 3crv_A XPD/RAD3 related DNA he 96.9 0.009 3.1E-07 61.4 13.0 114 300-419 378-530 (551)
106 2orw_A Thymidine kinase; TMTK, 96.8 0.0014 4.9E-08 56.9 6.0 39 136-182 3-41 (184)
107 1uaa_A REP helicase, protein ( 96.8 0.0019 6.6E-08 68.2 7.5 70 121-196 2-71 (673)
108 3vkw_A Replicase large subunit 96.7 0.0018 6E-08 63.9 6.0 84 138-258 163-246 (446)
109 1pjr_A PCRA; DNA repair, DNA r 96.7 0.005 1.7E-07 65.5 9.8 71 120-196 10-80 (724)
110 1xx6_A Thymidine kinase; NESG, 96.6 0.0022 7.6E-08 56.0 5.6 39 136-182 8-46 (191)
111 2b8t_A Thymidine kinase; deoxy 96.4 0.0013 4.6E-08 58.9 3.0 90 136-258 12-101 (223)
112 2j9r_A Thymidine kinase; TK1, 96.4 0.0021 7.3E-08 56.8 4.2 39 137-183 29-67 (214)
113 3ec2_A DNA replication protein 96.1 0.016 5.5E-07 49.8 7.8 31 123-153 16-55 (180)
114 1gm5_A RECG; helicase, replica 96.0 0.028 9.4E-07 60.0 10.7 84 303-386 407-495 (780)
115 2orv_A Thymidine kinase; TP4A 95.9 0.0078 2.7E-07 53.7 4.9 39 136-182 19-57 (234)
116 3e2i_A Thymidine kinase; Zn-bi 95.9 0.004 1.4E-07 54.9 2.9 40 136-183 28-67 (219)
117 3u4q_A ATP-dependent helicase/ 95.8 0.017 5.7E-07 65.2 8.5 72 120-195 9-80 (1232)
118 2kjq_A DNAA-related protein; s 95.4 0.0065 2.2E-07 50.7 2.6 18 135-152 35-52 (149)
119 1w4r_A Thymidine kinase; type 95.2 0.015 5.2E-07 50.4 4.3 38 136-181 20-57 (195)
120 2zpa_A Uncharacterized protein 95.2 0.015 5E-07 60.3 4.7 59 121-190 175-235 (671)
121 1jbk_A CLPB protein; beta barr 94.9 0.3 1E-05 41.4 11.8 18 136-153 43-60 (195)
122 2p65_A Hypothetical protein PF 94.7 0.35 1.2E-05 40.9 11.8 18 136-153 43-60 (187)
123 3oiy_A Reverse gyrase helicase 94.5 0.16 5.6E-06 49.7 10.2 91 297-387 47-145 (414)
124 2v1u_A Cell division control p 94.2 0.27 9.3E-06 47.3 11.0 18 136-153 44-61 (387)
125 1a5t_A Delta prime, HOLB; zinc 94.2 0.063 2.2E-06 51.2 6.2 40 122-162 3-49 (334)
126 3te6_A Regulatory protein SIR3 94.1 0.12 4E-06 48.8 7.6 26 136-162 45-70 (318)
127 1d2n_A N-ethylmaleimide-sensit 94.0 0.19 6.4E-06 46.1 8.9 17 137-153 65-81 (272)
128 1l8q_A Chromosomal replication 93.9 0.16 5.5E-06 47.9 8.5 17 136-152 37-53 (324)
129 3bos_A Putative DNA replicatio 93.7 0.074 2.5E-06 47.5 5.4 19 135-153 51-69 (242)
130 2eyq_A TRCF, transcription-rep 93.3 0.34 1.2E-05 54.1 10.9 90 297-386 635-730 (1151)
131 2qby_B CDC6 homolog 3, cell di 93.2 0.27 9.1E-06 47.5 8.9 17 137-153 46-62 (384)
132 2w0m_A SSO2452; RECA, SSPF, un 92.9 0.33 1.1E-05 42.9 8.4 19 135-153 22-40 (235)
133 3pfi_A Holliday junction ATP-d 92.7 0.13 4.6E-06 48.8 5.8 17 137-153 56-72 (338)
134 1fnn_A CDC6P, cell division co 92.6 0.3 1E-05 47.1 8.2 15 138-152 46-60 (389)
135 2z4s_A Chromosomal replication 92.2 0.45 1.5E-05 47.1 9.1 17 137-153 131-147 (440)
136 2chg_A Replication factor C sm 91.7 0.57 1.9E-05 40.8 8.3 16 137-152 39-54 (226)
137 4ddu_A Reverse gyrase; topoiso 91.7 0.53 1.8E-05 52.3 9.7 92 296-387 103-202 (1104)
138 3u61_B DNA polymerase accessor 91.6 0.39 1.3E-05 45.2 7.5 15 245-259 104-118 (324)
139 3hjh_A Transcription-repair-co 91.5 0.62 2.1E-05 46.6 9.2 53 135-198 13-65 (483)
140 1oyw_A RECQ helicase, ATP-depe 91.5 0.9 3.1E-05 46.0 10.5 61 311-371 63-123 (523)
141 2qby_A CDC6 homolog 1, cell di 91.5 0.7 2.4E-05 44.3 9.4 18 136-153 45-62 (386)
142 1t6n_A Probable ATP-dependent 90.7 1.1 3.8E-05 39.3 9.2 71 314-387 83-164 (220)
143 3ber_A Probable ATP-dependent 90.7 1.5 5.1E-05 39.4 10.2 71 313-387 111-192 (249)
144 1hqc_A RUVB; extended AAA-ATPa 90.5 0.2 6.9E-06 47.1 4.3 17 136-152 38-54 (324)
145 3kl4_A SRP54, signal recogniti 90.3 0.25 8.7E-06 48.6 4.9 17 138-154 99-115 (433)
146 2p6n_A ATP-dependent RNA helic 90.2 1.5 5E-05 37.8 9.3 71 172-252 54-128 (191)
147 2v1x_A ATP-dependent DNA helic 90.2 1.1 3.6E-05 46.3 9.7 60 312-371 83-144 (591)
148 3dm5_A SRP54, signal recogniti 89.2 0.27 9.3E-06 48.4 4.1 17 138-154 102-118 (443)
149 1nlf_A Regulatory protein REPA 89.1 1.4 4.7E-05 40.4 8.8 23 133-155 27-49 (279)
150 2eyu_A Twitching motility prot 89.0 0.31 1.1E-05 44.5 4.1 20 133-152 22-41 (261)
151 4a74_A DNA repair and recombin 88.9 1.2 4.2E-05 39.1 8.1 18 135-152 24-41 (231)
152 2z43_A DNA repair and recombin 88.9 0.88 3E-05 42.9 7.4 65 129-195 95-165 (324)
153 2r6a_A DNAB helicase, replicat 88.5 1.1 3.7E-05 44.5 8.1 39 135-180 202-240 (454)
154 2zr9_A Protein RECA, recombina 88.5 0.19 6.6E-06 48.1 2.5 37 136-180 61-97 (349)
155 3pvs_A Replication-associated 88.4 0.58 2E-05 46.4 6.0 17 137-153 51-67 (447)
156 3co5_A Putative two-component 88.1 0.41 1.4E-05 39.1 4.0 20 133-152 24-43 (143)
157 3n70_A Transport activator; si 87.8 0.41 1.4E-05 39.1 3.8 21 133-153 21-41 (145)
158 3fe2_A Probable ATP-dependent 87.7 4.4 0.00015 36.0 11.0 71 313-387 102-182 (242)
159 3cmu_A Protein RECA, recombina 87.5 0.32 1.1E-05 56.6 3.9 44 130-181 1415-1464(2050)
160 2q6t_A DNAB replication FORK h 87.2 0.92 3.2E-05 44.9 6.6 38 136-180 200-237 (444)
161 4a1f_A DNAB helicase, replicat 87.1 0.36 1.2E-05 45.9 3.4 38 135-180 45-82 (338)
162 1xti_A Probable ATP-dependent 87.0 2.2 7.6E-05 40.8 9.2 71 313-386 76-157 (391)
163 2oxc_A Probable ATP-dependent 86.9 1.4 4.6E-05 39.1 7.0 86 296-386 71-171 (230)
164 3iuy_A Probable ATP-dependent 86.9 2.7 9.2E-05 36.9 9.0 72 312-387 93-173 (228)
165 4b4t_M 26S protease regulatory 86.5 0.58 2E-05 46.0 4.6 55 95-152 174-231 (434)
166 1sxj_E Activator 1 40 kDa subu 86.5 0.95 3.2E-05 43.0 6.1 15 138-152 38-52 (354)
167 3m6a_A ATP-dependent protease 86.5 0.75 2.6E-05 46.8 5.6 26 135-162 107-132 (543)
168 2hjv_A ATP-dependent RNA helic 86.3 1.3 4.6E-05 36.8 6.3 73 172-254 35-111 (163)
169 3jvv_A Twitching mobility prot 86.3 0.8 2.7E-05 43.9 5.3 18 135-152 122-139 (356)
170 2pl3_A Probable ATP-dependent 86.2 3.6 0.00012 36.3 9.5 70 313-387 97-177 (236)
171 2dr3_A UPF0273 protein PH0284; 86.1 0.57 1.9E-05 41.8 4.1 52 135-195 22-73 (247)
172 3io5_A Recombination and repai 85.9 0.86 2.9E-05 42.7 5.2 41 138-184 30-70 (333)
173 2fna_A Conserved hypothetical 85.9 19 0.00064 33.5 15.0 41 229-272 123-166 (357)
174 3b85_A Phosphate starvation-in 85.8 1 3.5E-05 39.4 5.4 30 123-152 9-38 (208)
175 1w5s_A Origin recognition comp 85.7 0.82 2.8E-05 44.4 5.3 17 137-153 51-69 (412)
176 2jgn_A DBX, DDX3, ATP-dependen 85.7 2.2 7.4E-05 36.4 7.4 71 172-252 46-120 (185)
177 2w58_A DNAI, primosome compone 85.4 1.4 4.8E-05 38.0 6.2 17 137-153 55-71 (202)
178 1v5w_A DMC1, meiotic recombina 85.2 0.98 3.4E-05 43.0 5.4 65 129-195 110-180 (343)
179 2rb4_A ATP-dependent RNA helic 85.0 2.1 7.2E-05 36.0 6.9 71 172-252 34-108 (175)
180 2qgz_A Helicase loader, putati 84.5 1.5 5E-05 41.0 6.2 19 136-154 152-170 (308)
181 1e9r_A Conjugal transfer prote 84.3 1 3.4E-05 44.4 5.2 44 135-186 52-95 (437)
182 3bor_A Human initiation factor 84.2 3.6 0.00012 36.4 8.5 89 296-387 77-179 (237)
183 1wrb_A DJVLGB; RNA helicase, D 84.1 13 0.00044 33.0 12.4 70 314-387 101-180 (253)
184 1p9r_A General secretion pathw 84.0 1.5 5.2E-05 42.9 6.3 27 126-152 155-183 (418)
185 1qvr_A CLPB protein; coiled co 84.0 2.3 7.8E-05 45.9 8.3 17 137-153 192-208 (854)
186 2i1q_A DNA repair and recombin 83.8 1.1 3.8E-05 42.1 5.1 27 128-154 85-116 (322)
187 1fuk_A Eukaryotic initiation f 83.6 1.8 6.2E-05 36.0 5.9 72 172-253 30-105 (165)
188 2gxq_A Heat resistant RNA depe 83.6 6.7 0.00023 33.5 9.8 71 313-387 72-150 (207)
189 1vec_A ATP-dependent RNA helic 83.5 3.7 0.00013 35.2 8.1 70 313-386 71-151 (206)
190 3eaq_A Heat resistant RNA depe 83.4 1.9 6.5E-05 37.7 6.1 71 172-252 31-105 (212)
191 3g5j_A Putative ATP/GTP bindin 83.1 2.1 7.3E-05 34.0 5.9 49 301-349 76-126 (134)
192 1wp9_A ATP-dependent RNA helic 82.7 5.2 0.00018 39.2 9.8 86 296-386 33-130 (494)
193 4b4t_J 26S protease regulatory 82.6 1.4 4.9E-05 42.7 5.3 54 96-152 142-198 (405)
194 2oap_1 GSPE-2, type II secreti 82.2 1.2 4.3E-05 44.8 4.9 38 113-152 238-276 (511)
195 3ly5_A ATP-dependent RNA helic 82.2 12 0.0004 33.7 11.3 71 313-387 126-207 (262)
196 3gk5_A Uncharacterized rhodane 82.1 1.4 4.8E-05 33.8 4.2 46 304-349 46-91 (108)
197 1t5i_A C_terminal domain of A 82.0 2.6 8.9E-05 35.4 6.3 71 172-252 31-105 (172)
198 1gku_B Reverse gyrase, TOP-RG; 81.9 3.9 0.00013 45.2 9.2 88 297-386 82-180 (1054)
199 4b4t_L 26S protease subunit RP 81.7 1 3.5E-05 44.3 4.0 17 136-152 215-231 (437)
200 4b4t_H 26S protease regulatory 81.6 1.3 4.5E-05 43.7 4.7 54 96-152 203-259 (467)
201 3ipz_A Monothiol glutaredoxin- 80.8 12 0.00039 28.6 9.1 66 303-368 7-78 (109)
202 2gno_A DNA polymerase III, gam 80.8 4.2 0.00014 37.8 7.7 17 138-154 20-36 (305)
203 2i4i_A ATP-dependent RNA helic 80.7 5.3 0.00018 38.5 8.9 71 172-252 276-350 (417)
204 3h4m_A Proteasome-activating n 80.3 0.92 3.2E-05 41.6 3.0 54 96-152 11-67 (285)
205 2gza_A Type IV secretion syste 79.5 1.2 4.2E-05 42.6 3.7 20 132-151 171-190 (361)
206 4ag6_A VIRB4 ATPase, type IV s 79.2 1.9 6.7E-05 41.6 5.1 41 135-183 34-74 (392)
207 1lvg_A Guanylate kinase, GMP k 78.8 1.4 4.8E-05 38.1 3.5 18 135-152 3-20 (198)
208 1kgd_A CASK, peripheral plasma 78.8 1.3 4.6E-05 37.5 3.3 18 135-152 4-21 (180)
209 4b4t_K 26S protease regulatory 78.7 1.6 5.4E-05 42.8 4.2 54 96-152 166-222 (428)
210 3zyw_A Glutaredoxin-3; metal b 78.5 13 0.00044 28.5 8.7 66 303-368 5-76 (111)
211 2zts_A Putative uncharacterize 78.1 1 3.4E-05 40.3 2.4 52 136-195 30-81 (251)
212 1qde_A EIF4A, translation init 78.0 2.8 9.7E-05 36.6 5.4 87 295-386 60-160 (224)
213 3cf0_A Transitional endoplasmi 77.5 0.91 3.1E-05 42.3 2.0 54 97-153 10-66 (301)
214 4a2p_A RIG-I, retinoic acid in 77.5 4.1 0.00014 41.0 7.2 71 313-387 55-136 (556)
215 3hws_A ATP-dependent CLP prote 77.2 4.1 0.00014 38.8 6.7 19 135-153 50-68 (363)
216 3i32_A Heat resistant RNA depe 77.1 3.2 0.00011 38.5 5.7 73 172-254 28-104 (300)
217 4b4t_I 26S protease regulatory 76.6 1.8 6.3E-05 42.2 3.9 17 136-152 216-232 (437)
218 3bh0_A DNAB-like replicative h 76.6 2.5 8.5E-05 39.6 4.8 51 135-194 67-117 (315)
219 2px0_A Flagellar biosynthesis 76.2 2.7 9.3E-05 38.9 4.9 20 135-154 104-123 (296)
220 2x8a_A Nuclear valosin-contain 76.2 0.76 2.6E-05 42.2 1.0 53 97-152 5-60 (274)
221 1lv7_A FTSH; alpha/beta domain 76.2 4.4 0.00015 36.3 6.2 17 136-152 45-61 (257)
222 3u4q_B ATP-dependent helicase/ 76.1 3.1 0.00011 46.6 6.2 38 140-182 5-42 (1166)
223 3vaa_A Shikimate kinase, SK; s 75.7 1.6 5.6E-05 37.6 3.1 19 135-153 24-42 (199)
224 2pt7_A CAG-ALFA; ATPase, prote 75.4 1.4 4.8E-05 41.7 2.7 26 133-160 168-193 (330)
225 1q0u_A Bstdead; DEAD protein, 75.3 1.7 5.8E-05 38.0 3.1 88 295-386 50-155 (219)
226 1z6g_A Guanylate kinase; struc 75.1 2.1 7.2E-05 37.6 3.6 20 133-152 20-39 (218)
227 2jtq_A Phage shock protein E; 75.0 7.5 0.00026 27.9 6.2 45 303-348 29-76 (85)
228 2qz4_A Paraplegin; AAA+, SPG7, 74.9 11 0.00037 33.5 8.6 18 136-153 39-56 (262)
229 2bjv_A PSP operon transcriptio 74.7 2.3 8E-05 38.4 4.0 19 134-152 27-45 (265)
230 2yan_A Glutaredoxin-3; oxidore 74.6 17 0.00057 27.3 8.3 65 304-368 7-77 (105)
231 3tr0_A Guanylate kinase, GMP k 74.4 2 6.9E-05 36.9 3.3 18 135-152 6-23 (205)
232 1xwi_A SKD1 protein; VPS4B, AA 74.4 4.6 0.00016 37.8 6.1 50 97-152 7-61 (322)
233 1qhx_A CPT, protein (chloramph 74.2 1.5 5E-05 36.9 2.3 18 136-153 3-20 (178)
234 3a8t_A Adenylate isopentenyltr 74.1 1.7 5.7E-05 41.1 2.8 18 137-154 41-58 (339)
235 2db3_A ATP-dependent RNA helic 74.0 14 0.00049 36.0 9.8 69 314-386 130-208 (434)
236 2ewv_A Twitching motility prot 74.0 1.6 5.6E-05 42.0 2.8 20 133-152 133-152 (372)
237 1ixz_A ATP-dependent metallopr 73.9 1.6 5.6E-05 39.2 2.7 54 96-152 10-65 (254)
238 3eie_A Vacuolar protein sortin 73.8 4.8 0.00016 37.6 6.0 52 96-153 12-68 (322)
239 1ofh_A ATP-dependent HSL prote 73.6 13 0.00043 34.1 8.9 18 136-153 50-67 (310)
240 1gmx_A GLPE protein; transfera 73.6 3.4 0.00012 31.5 4.1 45 305-349 50-95 (108)
241 1fuu_A Yeast initiation factor 73.5 11 0.00038 35.7 8.8 86 296-386 68-167 (394)
242 3i5x_A ATP-dependent RNA helic 73.5 15 0.0005 37.2 10.1 76 172-254 339-418 (563)
243 2l82_A Designed protein OR32; 73.3 16 0.00056 27.5 7.4 51 316-366 5-55 (162)
244 3tau_A Guanylate kinase, GMP k 73.3 2 7E-05 37.3 3.1 18 135-152 7-24 (208)
245 3exa_A TRNA delta(2)-isopenten 73.3 1.7 5.7E-05 40.7 2.6 17 137-153 4-20 (322)
246 1znw_A Guanylate kinase, GMP k 73.2 2.3 7.9E-05 36.9 3.4 28 132-161 16-43 (207)
247 3a00_A Guanylate kinase, GMP k 73.0 2.5 8.4E-05 36.0 3.5 16 137-152 2-17 (186)
248 3iij_A Coilin-interacting nucl 72.8 1.9 6.5E-05 36.4 2.7 21 134-154 9-29 (180)
249 2cvh_A DNA repair and recombin 72.4 3.1 0.00011 36.1 4.1 20 135-154 19-38 (220)
250 3trf_A Shikimate kinase, SK; a 72.4 2.2 7.5E-05 36.1 3.0 19 136-154 5-23 (185)
251 2l8b_A Protein TRAI, DNA helic 72.4 2.6 8.9E-05 35.8 3.3 59 123-188 36-96 (189)
252 2r8r_A Sensor protein; KDPD, P 72.3 3.7 0.00013 36.3 4.5 20 138-157 8-27 (228)
253 2qmh_A HPR kinase/phosphorylas 72.1 1.9 6.5E-05 37.4 2.4 17 136-152 34-50 (205)
254 1rj9_A FTSY, signal recognitio 71.9 3.6 0.00012 38.3 4.5 26 136-163 102-127 (304)
255 3cmw_A Protein RECA, recombina 71.9 1.6 5.6E-05 50.2 2.5 88 137-259 1432-1522(1706)
256 3nbx_X ATPase RAVA; AAA+ ATPas 71.7 2.2 7.5E-05 42.8 3.2 26 127-152 32-57 (500)
257 1zp6_A Hypothetical protein AT 71.7 1.7 5.8E-05 37.0 2.1 19 134-152 7-25 (191)
258 1s96_A Guanylate kinase, GMP k 71.6 2.6 9E-05 37.1 3.4 20 133-152 13-32 (219)
259 2qor_A Guanylate kinase; phosp 71.5 2.2 7.7E-05 36.8 2.9 20 133-152 9-28 (204)
260 2j41_A Guanylate kinase; GMP, 71.5 2.3 7.8E-05 36.6 3.0 19 134-152 4-22 (207)
261 4akg_A Glutathione S-transfera 71.1 5.7 0.00019 48.1 6.9 48 106-154 890-941 (2695)
262 3lw7_A Adenylate kinase relate 71.1 1.8 6.1E-05 35.9 2.1 16 138-153 3-18 (179)
263 1cr0_A DNA primase/helicase; R 71.0 3.8 0.00013 37.7 4.5 21 133-153 32-52 (296)
264 3fht_A ATP-dependent RNA helic 71.0 6.5 0.00022 37.7 6.4 71 172-252 266-340 (412)
265 3ney_A 55 kDa erythrocyte memb 71.0 2.5 8.5E-05 36.6 3.0 18 135-152 18-35 (197)
266 3dkp_A Probable ATP-dependent 70.9 3.8 0.00013 36.4 4.4 90 295-387 75-181 (245)
267 1u0j_A DNA replication protein 70.9 8.4 0.00029 34.9 6.6 44 108-154 73-122 (267)
268 3foz_A TRNA delta(2)-isopenten 70.9 2.2 7.6E-05 39.7 2.8 16 138-153 12-27 (316)
269 3sqw_A ATP-dependent RNA helic 70.6 18 0.00061 36.8 10.0 77 172-255 288-368 (579)
270 1iy2_A ATP-dependent metallopr 70.6 2.2 7.4E-05 39.0 2.7 16 137-152 74-89 (278)
271 1kag_A SKI, shikimate kinase I 70.4 3.4 0.00012 34.3 3.7 24 136-161 4-27 (173)
272 2d7d_A Uvrabc system protein B 70.3 14 0.00049 38.3 9.1 77 172-258 445-525 (661)
273 2ze6_A Isopentenyl transferase 70.3 2.3 8E-05 38.3 2.8 15 139-153 4-18 (253)
274 3gx8_A Monothiol glutaredoxin- 70.2 26 0.00088 27.3 8.7 56 303-358 5-69 (121)
275 3nwn_A Kinesin-like protein KI 70.2 3 0.0001 39.8 3.6 25 129-153 96-122 (359)
276 1f2t_A RAD50 ABC-ATPase; DNA d 70.0 3.1 0.00011 34.1 3.3 23 138-162 25-47 (149)
277 3kta_A Chromosome segregation 69.9 2.9 9.9E-05 35.2 3.2 23 138-162 28-50 (182)
278 1w36_B RECB, exodeoxyribonucle 69.8 8.1 0.00028 43.3 7.6 59 137-195 17-79 (1180)
279 1u94_A RECA protein, recombina 69.8 3.7 0.00013 39.1 4.2 38 135-180 62-99 (356)
280 1s2m_A Putative ATP-dependent 69.7 23 0.00078 33.7 10.1 87 296-386 68-168 (400)
281 3bgw_A DNAB-like replicative h 69.6 4.5 0.00015 39.9 4.9 37 136-180 197-233 (444)
282 2r44_A Uncharacterized protein 69.6 2.5 8.5E-05 39.7 2.9 22 131-152 41-62 (331)
283 3flh_A Uncharacterized protein 69.5 2.4 8.3E-05 33.4 2.4 44 305-348 63-108 (124)
284 2wem_A Glutaredoxin-related pr 69.5 23 0.00079 27.5 8.2 64 305-368 11-81 (118)
285 1ex7_A Guanylate kinase; subst 69.0 2.5 8.5E-05 36.2 2.5 16 137-152 2-17 (186)
286 2ehv_A Hypothetical protein PH 69.0 4.1 0.00014 36.1 4.2 21 133-153 27-47 (251)
287 1kht_A Adenylate kinase; phosp 68.9 2.2 7.7E-05 36.1 2.3 18 136-153 3-20 (192)
288 3foj_A Uncharacterized protein 68.9 3 0.0001 31.4 2.7 38 311-348 54-91 (100)
289 3syl_A Protein CBBX; photosynt 68.5 2.7 9.3E-05 38.8 3.0 17 137-153 68-84 (309)
290 3tbk_A RIG-I helicase domain; 68.3 7.5 0.00026 39.0 6.4 70 313-386 52-132 (555)
291 1ojl_A Transcriptional regulat 68.1 3.5 0.00012 38.3 3.6 18 135-152 24-41 (304)
292 2j0s_A ATP-dependent RNA helic 68.0 28 0.00096 33.2 10.4 88 295-386 83-184 (410)
293 1um8_A ATP-dependent CLP prote 67.9 10 0.00034 36.2 6.9 18 136-153 72-89 (376)
294 4a2q_A RIG-I, retinoic acid in 67.8 12 0.00042 39.8 8.3 70 313-386 296-376 (797)
295 4gp7_A Metallophosphoesterase; 67.8 1.8 6E-05 36.4 1.3 19 135-153 8-26 (171)
296 3pey_A ATP-dependent RNA helic 67.8 12 0.00041 35.4 7.6 74 172-255 243-320 (395)
297 3c8u_A Fructokinase; YP_612366 67.3 3.2 0.00011 36.0 3.0 17 136-152 22-38 (208)
298 3b9q_A Chloroplast SRP recepto 67.3 3.6 0.00012 38.2 3.5 25 136-162 100-124 (302)
299 3iwh_A Rhodanese-like domain p 67.2 2.9 9.9E-05 31.8 2.3 38 310-347 53-90 (103)
300 1y63_A LMAJ004144AAA protein; 67.0 3.4 0.00012 35.0 3.1 19 135-153 9-27 (184)
301 2wci_A Glutaredoxin-4; redox-a 67.0 22 0.00075 28.4 7.7 66 303-368 24-95 (135)
302 1c4o_A DNA nucleotide excision 67.0 18 0.00063 37.5 9.2 77 172-258 439-519 (664)
303 1vma_A Cell division protein F 66.9 5 0.00017 37.3 4.4 17 137-153 105-121 (306)
304 3hix_A ALR3790 protein; rhodan 66.7 6.5 0.00022 29.8 4.3 40 309-348 48-88 (106)
305 1ye8_A Protein THEP1, hypothet 66.6 3.9 0.00013 34.6 3.3 15 138-152 2-16 (178)
306 3crm_A TRNA delta(2)-isopenten 66.6 3 0.0001 39.1 2.8 17 138-154 7-23 (323)
307 1yks_A Genome polyprotein [con 66.5 7.6 0.00026 38.1 5.9 68 172-251 177-245 (440)
308 1g5t_A COB(I)alamin adenosyltr 66.5 6.5 0.00022 33.9 4.6 35 137-179 29-63 (196)
309 4eun_A Thermoresistant glucoki 66.5 4.1 0.00014 35.0 3.5 18 135-152 28-45 (200)
310 2c9o_A RUVB-like 1; hexameric 66.3 7.8 0.00027 38.2 5.9 19 136-154 63-81 (456)
311 2v9p_A Replication protein E1; 66.2 3.6 0.00012 38.3 3.2 27 134-162 124-150 (305)
312 3eme_A Rhodanese-like domain p 66.2 3.1 0.00011 31.4 2.3 38 311-348 54-91 (103)
313 1htw_A HI0065; nucleotide-bind 66.2 3.3 0.00011 34.4 2.7 27 134-162 31-57 (158)
314 1bg2_A Kinesin; motor protein, 66.1 4.1 0.00014 38.2 3.6 25 129-153 69-95 (325)
315 3b9p_A CG5977-PA, isoform A; A 66.0 3.2 0.00011 38.1 2.9 54 97-153 16-71 (297)
316 3tif_A Uncharacterized ABC tra 65.8 3 0.0001 37.2 2.5 24 134-159 29-52 (235)
317 1n0w_A DNA repair protein RAD5 65.8 6.2 0.00021 34.7 4.7 20 135-154 23-42 (243)
318 1nij_A Hypothetical protein YJ 65.8 4.4 0.00015 37.9 3.8 15 138-152 6-20 (318)
319 3kb2_A SPBC2 prophage-derived 65.6 3.5 0.00012 34.1 2.8 16 138-153 3-18 (173)
320 1wik_A Thioredoxin-like protei 65.6 33 0.0011 25.8 8.4 58 310-367 11-74 (109)
321 1ly1_A Polynucleotide kinase; 65.6 2.7 9.4E-05 35.1 2.1 16 138-153 4-19 (181)
322 2v6i_A RNA helicase; membrane, 65.6 7.7 0.00026 38.0 5.7 53 172-229 171-224 (431)
323 2yjt_D ATP-dependent RNA helic 69.1 1.3 4.4E-05 37.2 0.0 71 172-252 30-104 (170)
324 3hr8_A Protein RECA; alpha and 65.0 4.8 0.00016 38.4 3.9 38 136-181 61-98 (356)
325 2nr8_A Kinesin-like protein KI 65.0 4.4 0.00015 38.6 3.6 25 128-152 94-120 (358)
326 1xp8_A RECA protein, recombina 65.0 5.3 0.00018 38.2 4.2 38 136-181 74-111 (366)
327 3o8b_A HCV NS3 protease/helica 65.0 8.8 0.0003 39.8 6.1 66 172-251 396-461 (666)
328 2lci_A Protein OR36; structura 64.9 38 0.0013 24.7 10.4 77 294-370 32-108 (134)
329 1xjc_A MOBB protein homolog; s 64.9 6.8 0.00023 32.9 4.4 15 138-152 6-20 (169)
330 3t0q_A AGR253WP; kinesin, alph 64.5 4.6 0.00016 38.4 3.6 26 128-153 76-103 (349)
331 2i3b_A HCR-ntpase, human cance 64.4 5 0.00017 34.3 3.6 29 244-272 103-133 (189)
332 4etp_A Kinesin-like protein KA 64.4 5 0.00017 38.9 3.9 25 129-153 132-158 (403)
333 2ius_A DNA translocase FTSK; n 64.3 9.5 0.00032 38.2 6.0 17 136-152 167-183 (512)
334 3uk6_A RUVB-like 2; hexameric 64.1 3.7 0.00012 39.1 2.9 17 137-153 71-87 (368)
335 2wv9_A Flavivirin protease NS2 64.0 8.6 0.0003 40.1 5.9 68 172-251 410-478 (673)
336 2h58_A Kinesin-like protein KI 64.0 4.8 0.00016 37.9 3.6 26 128-153 71-98 (330)
337 1zu4_A FTSY; GTPase, signal re 63.9 6.1 0.00021 37.0 4.4 18 136-153 105-122 (320)
338 3nwj_A ATSK2; P loop, shikimat 63.9 4.8 0.00016 36.2 3.5 19 135-153 47-65 (250)
339 1njg_A DNA polymerase III subu 63.9 5.3 0.00018 34.8 3.9 16 138-153 47-62 (250)
340 3b6u_A Kinesin-like protein KI 63.9 4.7 0.00016 38.6 3.6 23 130-152 94-118 (372)
341 3d3q_A TRNA delta(2)-isopenten 63.8 3.7 0.00013 38.8 2.8 17 138-154 9-25 (340)
342 3gbj_A KIF13B protein; kinesin 63.8 4.8 0.00016 38.3 3.6 25 129-153 84-110 (354)
343 1nks_A Adenylate kinase; therm 63.7 9.7 0.00033 31.9 5.4 16 138-153 3-18 (194)
344 1f9v_A Kinesin-like protein KA 63.7 4.9 0.00017 38.1 3.7 25 129-153 76-102 (347)
345 1t5c_A CENP-E protein, centrom 63.7 4.8 0.00016 38.2 3.6 25 129-153 69-95 (349)
346 2vvg_A Kinesin-2; motor protei 63.6 4.9 0.00017 38.2 3.6 24 130-153 82-107 (350)
347 2zfi_A Kinesin-like protein KI 63.5 4.9 0.00017 38.4 3.6 24 129-152 81-106 (366)
348 1x88_A Kinesin-like protein KI 63.5 4.5 0.00015 38.6 3.4 24 129-152 80-105 (359)
349 2y65_A Kinesin, kinesin heavy 63.5 4.9 0.00017 38.4 3.6 23 130-152 77-101 (365)
350 1v8k_A Kinesin-like protein KI 63.4 5 0.00017 38.9 3.7 24 130-153 147-172 (410)
351 3eiq_A Eukaryotic initiation f 63.3 37 0.0013 32.2 10.2 88 296-386 87-188 (414)
352 3cm0_A Adenylate kinase; ATP-b 63.2 3.1 0.00011 35.1 2.0 18 136-153 4-21 (186)
353 3lre_A Kinesin-like protein KI 63.1 4.9 0.00017 38.2 3.6 23 130-152 98-122 (355)
354 3uie_A Adenylyl-sulfate kinase 63.1 4.4 0.00015 34.8 3.0 20 134-153 23-42 (200)
355 1knq_A Gluconate kinase; ALFA/ 63.1 3.8 0.00013 34.2 2.5 17 136-152 8-24 (175)
356 3t15_A Ribulose bisphosphate c 63.0 3.8 0.00013 37.8 2.7 17 137-153 37-53 (293)
357 1goj_A Kinesin, kinesin heavy 62.9 5 0.00017 38.2 3.6 24 130-153 73-98 (355)
358 3vfd_A Spastin; ATPase, microt 62.9 10 0.00035 36.4 6.0 18 136-153 148-165 (389)
359 2og2_A Putative signal recogni 62.9 4.7 0.00016 38.4 3.4 16 137-152 158-173 (359)
360 3dc4_A Kinesin-like protein NO 62.8 4.8 0.00016 38.1 3.4 24 129-152 86-111 (344)
361 2fsf_A Preprotein translocase 62.7 28 0.00096 37.0 9.4 86 295-386 96-199 (853)
362 2cbz_A Multidrug resistance-as 62.4 3.8 0.00013 36.6 2.5 18 134-151 29-46 (237)
363 3e70_C DPA, signal recognition 62.2 4.9 0.00017 37.8 3.4 17 136-152 129-145 (328)
364 4a14_A Kinesin, kinesin-like p 62.1 5.7 0.00019 37.6 3.8 25 129-153 75-101 (344)
365 2xau_A PRE-mRNA-splicing facto 61.8 18 0.00063 38.3 8.1 75 172-252 303-393 (773)
366 3eph_A TRNA isopentenyltransfe 61.6 4.2 0.00014 39.4 2.8 17 138-154 4-20 (409)
367 2qp9_X Vacuolar protein sortin 61.6 4.7 0.00016 38.3 3.2 18 136-153 84-101 (355)
368 2wbe_C Bipolar kinesin KRP-130 61.6 4.9 0.00017 38.5 3.3 23 130-152 93-117 (373)
369 3qks_A DNA double-strand break 61.5 5.3 0.00018 34.5 3.3 24 138-163 25-48 (203)
370 1sgw_A Putative ABC transporte 61.5 4.3 0.00015 35.6 2.7 19 133-151 32-50 (214)
371 1m7g_A Adenylylsulfate kinase; 61.4 5.7 0.00019 34.4 3.5 30 123-153 13-42 (211)
372 3lnc_A Guanylate kinase, GMP k 61.1 2.6 8.9E-05 37.2 1.2 20 133-152 24-43 (231)
373 3b6e_A Interferon-induced heli 60.9 9.5 0.00033 32.7 4.9 54 313-370 82-139 (216)
374 3cob_A Kinesin heavy chain-lik 60.9 4.8 0.00016 38.5 3.1 25 129-153 71-97 (369)
375 3qf7_A RAD50; ABC-ATPase, ATPa 60.9 5.1 0.00017 38.3 3.3 16 138-153 25-40 (365)
376 2c95_A Adenylate kinase 1; tra 60.9 5.6 0.00019 33.7 3.3 19 135-153 8-26 (196)
377 1wv9_A Rhodanese homolog TT165 60.9 7 0.00024 28.8 3.4 35 314-348 54-88 (94)
378 1zuh_A Shikimate kinase; alpha 60.8 4.9 0.00017 33.2 2.8 18 137-154 8-25 (168)
379 2k0z_A Uncharacterized protein 60.8 15 0.00053 27.8 5.6 38 311-348 54-91 (110)
380 2bdt_A BH3686; alpha-beta prot 60.7 4.8 0.00016 34.0 2.8 15 138-152 4-18 (189)
381 2jlq_A Serine protease subunit 60.6 11 0.00039 37.0 5.9 68 172-251 188-256 (451)
382 3u06_A Protein claret segregat 60.4 5.9 0.0002 38.5 3.6 26 128-153 129-156 (412)
383 3auy_A DNA double-strand break 60.4 5.2 0.00018 38.3 3.2 21 138-160 27-47 (371)
384 1tf5_A Preprotein translocase 60.3 38 0.0013 36.0 9.9 77 304-386 115-208 (844)
385 4fcw_A Chaperone protein CLPB; 60.1 5.5 0.00019 36.7 3.3 16 138-153 49-64 (311)
386 2iut_A DNA translocase FTSK; n 60.1 13 0.00043 37.8 6.1 25 137-162 215-239 (574)
387 2pze_A Cystic fibrosis transme 60.1 4.3 0.00015 36.0 2.4 18 134-151 32-49 (229)
388 2pcj_A ABC transporter, lipopr 60.1 4.2 0.00014 35.8 2.4 18 134-151 28-45 (224)
389 2rhm_A Putative kinase; P-loop 60.1 3.9 0.00013 34.6 2.1 17 137-153 6-22 (193)
390 3gfo_A Cobalt import ATP-bindi 60.0 4.2 0.00014 37.2 2.4 24 134-159 32-55 (275)
391 2rep_A Kinesin-like protein KI 59.8 5.9 0.0002 38.0 3.5 24 129-152 107-132 (376)
392 3tqc_A Pantothenate kinase; bi 59.8 15 0.00051 34.3 6.2 23 139-163 95-117 (321)
393 2ghi_A Transport protein; mult 59.8 4.4 0.00015 36.7 2.5 19 133-151 43-61 (260)
394 2heh_A KIF2C protein; kinesin, 59.8 6.1 0.00021 38.0 3.6 24 130-153 127-152 (387)
395 2owm_A Nckin3-434, related to 59.7 6.1 0.00021 38.8 3.6 24 130-153 129-154 (443)
396 3fmo_B ATP-dependent RNA helic 59.7 22 0.00075 32.6 7.4 85 296-387 141-241 (300)
397 1via_A Shikimate kinase; struc 59.7 5.7 0.00019 33.1 3.0 17 138-154 6-22 (175)
398 2ff7_A Alpha-hemolysin translo 59.6 4.4 0.00015 36.4 2.4 18 134-151 33-50 (247)
399 2yvu_A Probable adenylyl-sulfa 59.6 9 0.00031 32.2 4.4 18 136-153 13-30 (186)
400 2r2a_A Uncharacterized protein 59.6 5.9 0.0002 34.2 3.2 17 139-155 8-24 (199)
401 3t61_A Gluconokinase; PSI-biol 59.6 5.1 0.00017 34.3 2.8 17 137-153 19-35 (202)
402 1gvn_B Zeta; postsegregational 59.4 3.9 0.00013 37.6 2.1 15 138-152 35-49 (287)
403 3asz_A Uridine kinase; cytidin 59.3 5.5 0.00019 34.3 3.0 17 136-152 6-22 (211)
404 3bfn_A Kinesin-like protein KI 59.3 4.6 0.00016 38.8 2.7 23 131-153 92-116 (388)
405 2z0m_A 337AA long hypothetical 59.3 31 0.0011 31.6 8.5 69 313-386 56-134 (337)
406 1sxj_D Activator 1 41 kDa subu 59.3 7.5 0.00026 36.5 4.2 17 137-153 59-75 (353)
407 1hv8_A Putative ATP-dependent 59.2 47 0.0016 30.8 9.9 87 295-386 53-152 (367)
408 3d8b_A Fidgetin-like protein 1 59.2 4.8 0.00016 38.3 2.8 18 136-153 117-134 (357)
409 1tev_A UMP-CMP kinase; ploop, 59.1 4.7 0.00016 34.0 2.5 18 137-154 4-21 (196)
410 2v3c_C SRP54, signal recogniti 58.9 7 0.00024 38.3 3.9 18 137-154 100-117 (432)
411 2oca_A DAR protein, ATP-depend 58.3 14 0.00048 36.8 6.3 84 296-386 138-230 (510)
412 1tq1_A AT5G66040, senescence-a 58.2 5.4 0.00018 31.6 2.5 40 310-349 79-119 (129)
413 1g6h_A High-affinity branched- 58.2 4.7 0.00016 36.4 2.4 19 133-151 30-48 (257)
414 3cf2_A TER ATPase, transitiona 58.1 4.8 0.00016 42.8 2.7 56 96-152 471-527 (806)
415 2v54_A DTMP kinase, thymidylat 58.1 5.4 0.00018 34.1 2.7 18 135-152 3-20 (204)
416 1b0u_A Histidine permease; ABC 58.0 4.9 0.00017 36.4 2.5 18 134-151 30-47 (262)
417 2r62_A Cell division protease 57.9 3.1 0.00011 37.6 1.1 18 136-153 44-61 (268)
418 4gl2_A Interferon-induced heli 57.8 2.8 9.6E-05 43.9 0.9 69 314-386 57-141 (699)
419 2zu0_C Probable ATP-dependent 57.8 5.3 0.00018 36.3 2.7 26 133-160 43-68 (267)
420 4g1u_C Hemin import ATP-bindin 57.8 4.8 0.00017 36.6 2.4 18 134-151 35-52 (266)
421 1mv5_A LMRA, multidrug resista 57.6 4.3 0.00015 36.3 2.0 25 134-160 26-50 (243)
422 1in4_A RUVB, holliday junction 57.5 5.9 0.0002 37.2 3.1 16 137-152 52-67 (334)
423 1ji0_A ABC transporter; ATP bi 57.5 5 0.00017 35.8 2.4 18 134-151 30-47 (240)
424 1ak2_A Adenylate kinase isoenz 57.2 6.1 0.00021 34.8 3.0 19 136-154 16-34 (233)
425 2olj_A Amino acid ABC transpor 57.2 5.2 0.00018 36.3 2.5 25 134-160 48-72 (263)
426 1tue_A Replication protein E1; 57.0 6.1 0.00021 34.4 2.8 43 109-153 29-75 (212)
427 3lda_A DNA repair protein RAD5 57.0 10 0.00035 36.7 4.7 18 136-153 178-195 (400)
428 1vpl_A ABC transporter, ATP-bi 57.0 5.2 0.00018 36.1 2.5 18 134-151 39-56 (256)
429 2d2e_A SUFC protein; ABC-ATPas 57.0 5.5 0.00019 35.8 2.6 25 134-160 27-51 (250)
430 2ixe_A Antigen peptide transpo 56.8 5.3 0.00018 36.4 2.5 26 133-160 42-67 (271)
431 2bwj_A Adenylate kinase 5; pho 56.7 7.1 0.00024 33.1 3.2 19 135-153 11-29 (199)
432 3l9o_A ATP-dependent RNA helic 56.6 14 0.0005 40.9 6.4 81 295-386 208-295 (1108)
433 2yhs_A FTSY, cell division pro 56.4 6.9 0.00024 39.0 3.4 15 138-152 295-309 (503)
434 1sxj_A Activator 1 95 kDa subu 56.3 9.3 0.00032 38.4 4.5 17 137-153 78-94 (516)
435 3fb4_A Adenylate kinase; psych 56.2 6.3 0.00021 34.1 2.8 17 138-154 2-18 (216)
436 2qt1_A Nicotinamide riboside k 56.2 3.3 0.00011 35.7 1.0 19 134-152 19-37 (207)
437 2qi9_C Vitamin B12 import ATP- 55.9 5.5 0.00019 35.8 2.4 18 134-151 24-41 (249)
438 3pxg_A Negative regulator of g 55.9 14 0.00048 36.5 5.6 19 136-154 201-219 (468)
439 2ihy_A ABC transporter, ATP-bi 55.8 5.5 0.00019 36.5 2.4 19 133-151 44-62 (279)
440 1j8m_F SRP54, signal recogniti 55.5 11 0.00038 34.7 4.5 17 138-154 100-116 (297)
441 1qf9_A UMP/CMP kinase, protein 55.5 6.6 0.00023 33.0 2.8 16 138-153 8-23 (194)
442 2yz2_A Putative ABC transporte 55.3 5.8 0.0002 36.0 2.5 18 134-151 31-48 (266)
443 1cke_A CK, MSSA, protein (cyti 55.3 6.5 0.00022 34.2 2.8 17 137-153 6-22 (227)
444 3dl0_A Adenylate kinase; phosp 55.2 6.7 0.00023 34.0 2.8 16 138-153 2-17 (216)
445 1e6c_A Shikimate kinase; phosp 55.2 7.5 0.00026 32.1 3.1 17 137-153 3-19 (173)
446 3f9v_A Minichromosome maintena 55.2 6.4 0.00022 40.4 3.0 14 138-151 329-342 (595)
447 3k1j_A LON protease, ATP-depen 55.1 9.8 0.00033 39.1 4.5 22 131-152 55-76 (604)
448 2fz4_A DNA repair protein RAD2 54.9 27 0.00093 30.7 6.9 61 295-370 117-178 (237)
449 2nq2_C Hypothetical ABC transp 54.9 5.8 0.0002 35.7 2.4 18 134-151 29-46 (253)
450 3sr0_A Adenylate kinase; phosp 54.8 6.9 0.00024 34.0 2.8 16 139-154 3-18 (206)
451 3umf_A Adenylate kinase; rossm 54.8 6.3 0.00022 34.6 2.6 19 136-154 29-47 (217)
452 2iyv_A Shikimate kinase, SK; t 54.8 8.1 0.00028 32.4 3.2 17 137-153 3-19 (184)
453 1zd8_A GTP:AMP phosphotransfer 54.8 6.7 0.00023 34.4 2.8 17 137-153 8-24 (227)
454 3nh6_A ATP-binding cassette SU 54.7 4.1 0.00014 37.9 1.4 18 134-151 78-95 (306)
455 1sxj_C Activator 1 40 kDa subu 54.4 11 0.00038 35.3 4.5 15 139-153 49-63 (340)
456 1zak_A Adenylate kinase; ATP:A 54.2 7.8 0.00027 33.7 3.1 18 137-154 6-23 (222)
457 1pzn_A RAD51, DNA repair and r 54.1 10 0.00036 35.9 4.2 25 129-153 119-148 (349)
458 2plr_A DTMP kinase, probable t 54.1 6.3 0.00021 33.8 2.5 18 136-153 4-21 (213)
459 2whx_A Serine protease/ntpase/ 54.1 19 0.00064 37.1 6.4 68 172-251 355-423 (618)
460 2jaq_A Deoxyguanosine kinase; 53.9 7.2 0.00024 33.2 2.8 14 139-152 3-16 (205)
461 2f1r_A Molybdopterin-guanine d 53.9 4.5 0.00015 34.0 1.4 15 138-152 4-18 (171)
462 1aky_A Adenylate kinase; ATP:A 53.7 8 0.00027 33.6 3.1 17 137-153 5-21 (220)
463 1ls1_A Signal recognition part 53.6 12 0.0004 34.6 4.3 19 136-154 98-116 (295)
464 2zan_A Vacuolar protein sortin 53.6 6.7 0.00023 38.6 2.8 54 96-153 128-184 (444)
465 2pez_A Bifunctional 3'-phospho 53.4 7 0.00024 32.7 2.6 17 136-152 5-21 (179)
466 1ukz_A Uridylate kinase; trans 53.4 5.9 0.0002 33.9 2.1 16 138-153 17-32 (203)
467 3fvq_A Fe(3+) IONS import ATP- 53.4 6.7 0.00023 37.4 2.6 26 134-161 28-53 (359)
468 2cdn_A Adenylate kinase; phosp 53.3 7.5 0.00026 33.2 2.8 17 137-153 21-37 (201)
469 2z83_A Helicase/nucleoside tri 52.9 20 0.00069 35.3 6.2 68 172-251 190-258 (459)
470 1jjv_A Dephospho-COA kinase; P 52.8 7.7 0.00026 33.3 2.8 14 139-152 5-18 (206)
471 1q57_A DNA primase/helicase; d 52.8 7.4 0.00025 39.0 3.0 49 136-192 242-290 (503)
472 2fsx_A RV0390, COG0607: rhodan 52.4 14 0.00049 29.8 4.3 38 311-348 78-116 (148)
473 1vee_A Proline-rich protein fa 52.2 16 0.00054 28.9 4.4 37 312-348 73-110 (134)
474 3zq6_A Putative arsenical pump 52.2 13 0.00046 34.6 4.6 33 139-179 17-49 (324)
475 1iqp_A RFCS; clamp loader, ext 52.1 11 0.00036 34.9 3.9 16 138-153 48-63 (327)
476 1byi_A Dethiobiotin synthase; 52.0 16 0.00054 31.7 4.8 32 141-180 7-38 (224)
477 1c9k_A COBU, adenosylcobinamid 51.9 12 0.0004 31.7 3.7 45 139-195 2-46 (180)
478 3vkg_A Dynein heavy chain, cyt 51.9 31 0.0011 42.6 8.4 47 107-154 874-924 (3245)
479 1z47_A CYSA, putative ABC-tran 51.8 7.2 0.00025 37.1 2.6 26 134-161 39-64 (355)
480 1qxn_A SUD, sulfide dehydrogen 51.8 9.8 0.00034 30.4 3.1 40 309-348 78-118 (137)
481 1nkt_A Preprotein translocase 51.8 57 0.0019 34.9 9.5 71 310-386 149-236 (922)
482 2pt5_A Shikimate kinase, SK; a 51.6 8.5 0.00029 31.6 2.8 16 138-153 2-17 (168)
483 1g8p_A Magnesium-chelatase 38 51.6 6.2 0.00021 37.0 2.2 17 136-152 45-61 (350)
484 1np6_A Molybdopterin-guanine d 51.5 15 0.00052 30.8 4.4 16 137-152 7-22 (174)
485 2if2_A Dephospho-COA kinase; a 51.2 8.4 0.00029 32.9 2.8 15 138-152 3-17 (204)
486 2vli_A Antibiotic resistance p 51.2 5.7 0.00019 33.2 1.6 18 136-153 5-22 (183)
487 3ice_A Transcription terminati 51.1 35 0.0012 32.8 7.2 32 122-153 157-191 (422)
488 2z0h_A DTMP kinase, thymidylat 51.0 6.8 0.00023 33.1 2.1 16 139-154 3-18 (197)
489 2ffh_A Protein (FFH); SRP54, s 51.0 13 0.00044 36.3 4.3 18 137-154 99-116 (425)
490 1e4v_A Adenylate kinase; trans 50.9 8.5 0.00029 33.3 2.8 16 138-153 2-17 (214)
491 2bbs_A Cystic fibrosis transme 50.8 7.5 0.00025 35.8 2.5 17 135-151 63-79 (290)
492 2onk_A Molybdate/tungstate ABC 50.7 8.8 0.0003 34.2 2.9 23 137-161 25-47 (240)
493 2woo_A ATPase GET3; tail-ancho 50.7 15 0.0005 34.5 4.6 33 139-179 22-54 (329)
494 4a2w_A RIG-I, retinoic acid in 50.7 18 0.00063 39.3 5.9 70 313-386 296-376 (936)
495 2wwf_A Thymidilate kinase, put 50.6 9.4 0.00032 32.7 3.0 19 135-153 9-27 (212)
496 3rlf_A Maltose/maltodextrin im 50.6 7.9 0.00027 37.2 2.7 26 134-161 27-52 (381)
497 2yyz_A Sugar ABC transporter, 50.4 8 0.00027 36.9 2.7 25 135-161 28-52 (359)
498 4e22_A Cytidylate kinase; P-lo 50.2 9.4 0.00032 34.2 3.0 18 135-152 26-43 (252)
499 1uf9_A TT1252 protein; P-loop, 50.1 8.9 0.0003 32.6 2.8 19 139-157 11-29 (203)
500 3gd7_A Fusion complex of cysti 49.9 8 0.00028 37.3 2.6 25 133-159 44-68 (390)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.7e-64 Score=510.38 Aligned_cols=359 Identities=40% Similarity=0.694 Sum_probs=322.2
Q ss_pred cceeccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCC
Q 012013 86 EITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 165 (473)
Q Consensus 86 ~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~ 165 (473)
.+.+.+.++|.|+.+|+++++++.+++++.+.+|.+|+|+|.++|+.++++++++++||||||||++|++|++.++...+
T Consensus 43 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 43 PVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp CEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred eeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCcccc
Q 012013 166 FLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLR 245 (473)
Q Consensus 166 ~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~ 245 (473)
......++++|||+||++||.|++++++++....++++.+++||.....+...+..+++|+|+||++|.+++.+....+.
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccc
Confidence 33334578999999999999999999999998888999999999988778788888999999999999999998888899
Q ss_pred ceeEEeecchhhhhhCCCHHHHHHHHhhhh--------cCCCCc------------------------cccccceeeEEe
Q 012013 246 RVTYLVLDEADRMLDMGFEPQIKKILSQVI--------IGSPDL------------------------KANHAIRQHVDI 293 (473)
Q Consensus 246 ~~~~vVvDEah~l~~~~~~~~~~~i~~~~~--------~~~~~~------------------------~~~~~i~~~~~~ 293 (473)
++++||+||||+|++++|.++++.++.... +.++++ .....+.+.+..
T Consensus 203 ~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~ 282 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYE 282 (434)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEE
T ss_pred cCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEE
Confidence 999999999999999999999999976521 111111 112345566667
Q ss_pred cCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 012013 294 VSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 373 (473)
Q Consensus 294 ~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~ 373 (473)
+....|...|.+++.... .++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 283 ~~~~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~ 360 (434)
T 2db3_A 283 VNKYAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVA 360 (434)
T ss_dssp CCGGGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGG
T ss_pred eCcHHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhh
Confidence 778889999999888753 359999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEecc-ccHHHHHHHHHHHHHhCCCCCHHHHHh
Q 012013 374 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA-ANARFAKELITILEEAGQKVSPELAAM 446 (473)
Q Consensus 374 ~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~l~~~ 446 (473)
++|+|+|++++||+||+|.++++|+||+||+||.|+.|.|++|+++ .+...+.++.++++++++++|++|.+|
T Consensus 361 ~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 361 SRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp TSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred hCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 9999999999999999999999999999999999999999999995 578899999999999999999998765
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.3e-59 Score=470.01 Aligned_cols=365 Identities=45% Similarity=0.721 Sum_probs=322.6
Q ss_pred cceeccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCC
Q 012013 86 EITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 165 (473)
Q Consensus 86 ~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~ 165 (473)
.+.+.+.++|.++.+|+++++++.+.++|...+|.+|+|+|.++++.++++++++++||||+|||++|++|++..+....
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999998876532
Q ss_pred CC-------------CCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHH
Q 012013 166 FL-------------APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232 (473)
Q Consensus 166 ~~-------------~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~ 232 (473)
.. ....++++||++||++|+.|+++.+.++....++++..++|+.....+...+..+++|+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 10 11224789999999999999999999998888899999999988777777778889999999999
Q ss_pred HHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhh----------hcCCCCcc--------------------
Q 012013 233 LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV----------IIGSPDLK-------------------- 282 (473)
Q Consensus 233 l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~----------~~~~~~~~-------------------- 282 (473)
|.+++......+.++++||+||||++.+++|.+.+..++... ...++++.
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 999999887788899999999999999999999999987631 11112111
Q ss_pred ----ccccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHH
Q 012013 283 ----ANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSE 358 (473)
Q Consensus 283 ----~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~ 358 (473)
....+.+.+..+....+...+.+++.....+.++||||++++.++.+++.|...++.+..+||++++.+|..+++.
T Consensus 242 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 321 (417)
T 2i4i_A 242 RVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 321 (417)
T ss_dssp ----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHH
Confidence 1123444555667778889999999887667799999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCC
Q 012013 359 FKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQK 438 (473)
Q Consensus 359 f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 438 (473)
|++|+.+|||||+++++|+|+|++++||++|+|.++.+|+||+||+||.|++|.|++|+++.+...++++.+.+.++.++
T Consensus 322 f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 401 (417)
T 2i4i_A 322 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 401 (417)
T ss_dssp HHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred HHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCC
Q 012013 439 VSPELAAMGRGA 450 (473)
Q Consensus 439 ~~~~l~~~~~~~ 450 (473)
+|.+|.+|+...
T Consensus 402 ~~~~l~~~~~~~ 413 (417)
T 2i4i_A 402 VPSWLENMAYEH 413 (417)
T ss_dssp CCHHHHHHHTCS
T ss_pred CCHHHHHHHHhh
Confidence 999999998653
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.3e-54 Score=435.26 Aligned_cols=342 Identities=34% Similarity=0.567 Sum_probs=296.6
Q ss_pred CCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCC
Q 012013 94 VPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 173 (473)
Q Consensus 94 ~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 173 (473)
.+.+..+|+++++++.+++.+...+|.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~ 106 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRET 106 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSC
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCc
Confidence 34567789999999999999999999999999999999999999999999999999999999998876432 2367
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeec
Q 012013 174 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (473)
Q Consensus 174 ~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvD 253 (473)
++||++||++|+.|+.+.+.+++...++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||+|
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 89999999999999999999999888999999999988877777777889999999999999999887778899999999
Q ss_pred chhhhhhCCCHHHHHHHHhhh------hcCCCCc------------------------cccccceeeEEecCc-hhhHHH
Q 012013 254 EADRMLDMGFEPQIKKILSQV------IIGSPDL------------------------KANHAIRQHVDIVSE-SQKYNK 302 (473)
Q Consensus 254 Eah~l~~~~~~~~~~~i~~~~------~~~~~~~------------------------~~~~~i~~~~~~~~~-~~k~~~ 302 (473)
|||++.+++|...+..++... ...++++ .....+.+.+..+.. ..|...
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHH
T ss_pred cHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHH
Confidence 999999999999988886541 1111111 011223333333333 347888
Q ss_pred HHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 012013 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 382 (473)
Q Consensus 303 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v 382 (473)
+.+++.... ..++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 267 l~~~~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v 345 (410)
T 2j0s_A 267 LCDLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 345 (410)
T ss_dssp HHHHHHHHT-SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHhcC-CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccC
Confidence 888887754 4599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCCH
Q 012013 383 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSP 441 (473)
Q Consensus 383 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 441 (473)
++||++|+|+++..|+||+||+||.|++|.|++|+++.+...++++.+.+...-.++|.
T Consensus 346 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 346 SLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 99999999999999999999999999999999999999999999888887766666554
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.1e-53 Score=425.54 Aligned_cols=343 Identities=29% Similarity=0.497 Sum_probs=293.8
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEE
Q 012013 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 175 (473)
.+..+|+++++++.+.++|.+.+|.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~ 92 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQA 92 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCccE
Confidence 456789999999999999999999999999999999999999999999999999999999999886542 135689
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecch
Q 012013 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 255 (473)
Q Consensus 176 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEa 255 (473)
||++|+++|+.|+.+.+.++....++.+...+|+.....+...+...++|+|+||++|.+++......+.++++||+|||
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 99999999999999999999988889999998888766666666678899999999999998887777889999999999
Q ss_pred hhhhhCCCHHHHHHHHhhh------hcCCCC-----------------------ccccccceeeEEecCchhhHHHHHHH
Q 012013 256 DRMLDMGFEPQIKKILSQV------IIGSPD-----------------------LKANHAIRQHVDIVSESQKYNKLVKL 306 (473)
Q Consensus 256 h~l~~~~~~~~~~~i~~~~------~~~~~~-----------------------~~~~~~i~~~~~~~~~~~k~~~l~~~ 306 (473)
|++.+..|...+..+.... ...+++ ......+.+.+.......|...+..+
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 252 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTL 252 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHH
Confidence 9998887777777775431 111111 01122344555566677788888888
Q ss_pred HHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEE
Q 012013 307 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 386 (473)
Q Consensus 307 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi 386 (473)
+... ..+++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 253 ~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi 331 (400)
T 1s2m_A 253 FSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI 331 (400)
T ss_dssp HHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE
T ss_pred Hhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE
Confidence 7764 556999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCCHHHH
Q 012013 387 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELA 444 (473)
Q Consensus 387 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 444 (473)
++++|+++..|+||+||+||.|++|.|++|+++.+...++.+.+.+...-+++|..+.
T Consensus 332 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 389 (400)
T 1s2m_A 332 NFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATID 389 (400)
T ss_dssp ESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCC
T ss_pred EeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccccc
Confidence 9999999999999999999999999999999999998888888877666666665443
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.3e-53 Score=428.21 Aligned_cols=348 Identities=33% Similarity=0.553 Sum_probs=283.2
Q ss_pred CCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCC
Q 012013 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 172 (473)
Q Consensus 93 ~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 172 (473)
+.+....+|+++++++.+.+.+.+.++.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~ 108 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKA 108 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCS
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCc
Confidence 345567889999999999999999999999999999999999999999999999999999999999887542 236
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhh-cCCcEEEeChHHHHHHHHccCccccceeEEe
Q 012013 173 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLV 251 (473)
Q Consensus 173 ~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vV 251 (473)
.++||++||++|+.|+.+.+.++....++.+...+++.....+...+. ..++|+|+||++|.+++......+.++++||
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEE
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEE
Confidence 789999999999999999999998888888988888887666655554 6789999999999999988877788899999
Q ss_pred ecchhhhhhCCCHHHHHHHHhhh------hcCCCCcc------------------------ccccceeeEEec-CchhhH
Q 012013 252 LDEADRMLDMGFEPQIKKILSQV------IIGSPDLK------------------------ANHAIRQHVDIV-SESQKY 300 (473)
Q Consensus 252 vDEah~l~~~~~~~~~~~i~~~~------~~~~~~~~------------------------~~~~i~~~~~~~-~~~~k~ 300 (473)
+||||++.+++|...+..++..+ ...++++. ....+.+.+... ....+.
T Consensus 189 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (414)
T 3eiq_A 189 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL 268 (414)
T ss_dssp ECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHH
T ss_pred EECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHH
Confidence 99999999999999998887652 11222211 111222333333 334477
Q ss_pred HHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC
Q 012013 301 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 380 (473)
Q Consensus 301 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~ 380 (473)
..+.+++... ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 269 ~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 347 (414)
T 3eiq_A 269 DTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 347 (414)
T ss_dssp HHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGG
T ss_pred HHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCcc
Confidence 7888877765 446899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHh
Q 012013 381 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 446 (473)
Q Consensus 381 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~ 446 (473)
++++||++++|.++.+|+||+||+||.|++|.|++|+++.+...++++.+.+.....++|..+.++
T Consensus 348 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 348 QVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp GCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred CCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 999999999999999999999999999999999999999999999999999998888888877654
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2e-52 Score=438.11 Aligned_cols=326 Identities=33% Similarity=0.509 Sum_probs=265.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh--cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 012013 106 FPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (473)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~--~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~ 183 (473)
+++.+++++...+|.+|+|+|.++++.++ .+++++++||||+|||++|++|++..+..... ....++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-cccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 67899999999999999999999999876532 1223568999999999
Q ss_pred HHHHHHHHHHHhcc----CCCceEEEEEcCccCccchHHh-hcCCcEEEeChHHHHHHHHcc-CccccceeEEeecchhh
Q 012013 184 LAVQIQQESTKFGA----SSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEADR 257 (473)
Q Consensus 184 La~q~~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~vVvDEah~ 257 (473)
||.|+++.++++.. ...+.+..++++.....+...+ ..+++|+|+||++|.+++... ...+..+++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 99999999998642 2346678888887766666555 447899999999999988764 33577899999999999
Q ss_pred hhhCCCHHHHHHHHhhh-------------hcCCCCccc----------------------------cccceeeEEecCc
Q 012013 258 MLDMGFEPQIKKILSQV-------------IIGSPDLKA----------------------------NHAIRQHVDIVSE 296 (473)
Q Consensus 258 l~~~~~~~~~~~i~~~~-------------~~~~~~~~~----------------------------~~~i~~~~~~~~~ 296 (473)
+++++|.+.+..++..+ ...++++.. ...+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 99999999998886542 122222211 0111122222221
Q ss_pred -hhhHH----HHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhC---CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 012013 297 -SQKYN----KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---GWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 368 (473)
Q Consensus 297 -~~k~~----~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLv 368 (473)
..+.. .+...+.....+.++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 12222 22333333345679999999999999999999876 89999999999999999999999999999999
Q ss_pred EecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHH
Q 012013 369 ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 432 (473)
Q Consensus 369 aT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 432 (473)
||+++++|||+|++++||++|+|.++..|+||+||+||.|++|.|++|+++.+...++.+.+..
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988877776654
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.1e-52 Score=415.26 Aligned_cols=339 Identities=29% Similarity=0.509 Sum_probs=285.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEE
Q 012013 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (473)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 178 (473)
.+|+++++++.+.++|...+|.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 569999999999999999999999999999999999999999999999999999999998876542 235689999
Q ss_pred cCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccCccchHHhhc-CCcEEEeChHHHHHHHHccCccccceeEEeecchh
Q 012013 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (473)
Q Consensus 179 ~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 256 (473)
+||++|+.||.+++.++.... ++++..++|+.....+...+.. .++|+|+||++|.+++......+.++++||+||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999997665 6888888888776555555544 47999999999999998877778999999999999
Q ss_pred hhhhC-CCHHHHHHHHhhh------hcCCCCc-------------------------cccccceeeEEecCchhhHHHHH
Q 012013 257 RMLDM-GFEPQIKKILSQV------IIGSPDL-------------------------KANHAIRQHVDIVSESQKYNKLV 304 (473)
Q Consensus 257 ~l~~~-~~~~~~~~i~~~~------~~~~~~~-------------------------~~~~~i~~~~~~~~~~~k~~~l~ 304 (473)
++.++ ++...+..++... ...++++ .....+.+.+.......+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 99874 6677777665431 1111111 11123444555566778888888
Q ss_pred HHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCE
Q 012013 305 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 384 (473)
Q Consensus 305 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~ 384 (473)
+++... ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 243 ~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 243 DLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321 (391)
T ss_dssp HHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEE
T ss_pred HHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCE
Confidence 888775 5679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccc-cHHHHHHHHHHHHHhCCCCCHHH
Q 012013 385 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSPEL 443 (473)
Q Consensus 385 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~l 443 (473)
||++++|+++..|+||+||+||.|++|.|++|+++. +..+++.+.+.+...-.++|.++
T Consensus 322 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (391)
T 1xti_A 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 381 (391)
T ss_dssp EEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCC
T ss_pred EEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccc
Confidence 999999999999999999999999999999999976 45666777776665556666543
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.5e-51 Score=405.29 Aligned_cols=331 Identities=37% Similarity=0.604 Sum_probs=286.2
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEE
Q 012013 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (473)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 176 (473)
..+|+++++++.+.+.|.+.+|.+|+|+|.++++.++++ +++++.+|||+|||++|++|++..+... .++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 457999999999999999999999999999999999988 6999999999999999999998876542 367899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchh
Q 012013 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (473)
Q Consensus 177 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 256 (473)
|++|+++|+.|+.+.+.++....++.+..++++.....+...+. .++|+|+||++|.+.+......+.++++||+||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998888888988988877655554444 68999999999999998877778899999999999
Q ss_pred hhhhCCCHHHHHHHHhhh------hcCCCCcc--------------------ccccceeeEEecCchhhHHHHHHHHHhH
Q 012013 257 RMLDMGFEPQIKKILSQV------IIGSPDLK--------------------ANHAIRQHVDIVSESQKYNKLVKLLEDI 310 (473)
Q Consensus 257 ~l~~~~~~~~~~~i~~~~------~~~~~~~~--------------------~~~~i~~~~~~~~~~~k~~~l~~~l~~~ 310 (473)
++.+++|...+..++... ...++++. ....+.+.+.......+...+.+++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-- 235 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINANIEQSYVEVNENERFEALCRLLK-- 235 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSSSSEEEEEECCGGGHHHHHHHHHC--
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCCCceEEEEEeChHHHHHHHHHHHh--
Confidence 999999998888886541 11122211 11233444555666778888877776
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCC
Q 012013 311 MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 390 (473)
Q Consensus 311 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~ 390 (473)
....++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~ 315 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL 315 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCC
Q 012013 391 PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 437 (473)
Q Consensus 391 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 437 (473)
|+|+.+|+||+||+||.|++|.+++++++.+...+..+.+.+...-.
T Consensus 316 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 362 (367)
T 1hv8_A 316 PQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 362 (367)
T ss_dssp CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCC
T ss_pred CCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999998888887777655433
No 9
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.5e-51 Score=426.36 Aligned_cols=326 Identities=33% Similarity=0.512 Sum_probs=266.2
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh--cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 012013 106 FPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (473)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~--~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~ 183 (473)
+++.+++++...+|..|+|+|.++++.++ .+++++++||||+|||++|++|++..+..... ....++++|||+||++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCCCeEEEEcchHH
Confidence 99999999999999999999999999999 67899999999999999999999998876432 1233678999999999
Q ss_pred HHHHHHHHHHHhcc----CCCceEEEEEcCccCccchHHhh-cCCcEEEeChHHHHHHHHcc-CccccceeEEeecchhh
Q 012013 184 LAVQIQQESTKFGA----SSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEADR 257 (473)
Q Consensus 184 La~q~~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~vVvDEah~ 257 (473)
||.|+.+++.++.. ...+.+..++++.....+...+. .+++|+|+||++|.+++... ...+..+++|||||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 99999999998752 24467888888887766666553 47899999999999988764 34578899999999999
Q ss_pred hhhCCCHHHHHHHHhhh-------------hcCCCCccc----------------------------cccceeeEEecCc
Q 012013 258 MLDMGFEPQIKKILSQV-------------IIGSPDLKA----------------------------NHAIRQHVDIVSE 296 (473)
Q Consensus 258 l~~~~~~~~~~~i~~~~-------------~~~~~~~~~----------------------------~~~i~~~~~~~~~ 296 (473)
+++++|.+.+..++..+ ...++++.. ...+.+.+.....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 99999999998886542 111222111 0111122222221
Q ss_pred -hhhH----HHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhC---CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 012013 297 -SQKY----NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---GWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 368 (473)
Q Consensus 297 -~~k~----~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLv 368 (473)
..+. ..+...+.....+.++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 2222 222333333345679999999999999999999876 89999999999999999999999999999999
Q ss_pred EecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHH
Q 012013 369 ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 432 (473)
Q Consensus 369 aT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 432 (473)
||+++++|||+|++++||++++|.++..|+||+||+||.|++|.|++|+++.+..+++.+.+..
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988877776543
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=9.6e-50 Score=401.46 Aligned_cols=337 Identities=28% Similarity=0.471 Sum_probs=276.4
Q ss_pred CCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCC
Q 012013 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 172 (473)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 172 (473)
+.+..+|+++++++.+++++.+.+|.+|+|+|.++++.++++ +++++++|||+|||++|++|++..+... ..+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~ 95 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKY 95 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CCC
Confidence 356788999999999999999999999999999999999987 8999999999999999999999887543 235
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHc-cCccccceeEE
Q 012013 173 PIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYL 250 (473)
Q Consensus 173 ~~vlil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~v 250 (473)
+++||++||++|+.|+.+.+.++.... .+.+....++....... ...++|+|+||++|.+++.. ....+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 689999999999999999999987653 56677777765543222 34579999999999999865 45567899999
Q ss_pred eecchhhhhh-CCCHHHHHHHHhhh------hcCCCCcc------------------------ccccceeeEEec-Cchh
Q 012013 251 VLDEADRMLD-MGFEPQIKKILSQV------IIGSPDLK------------------------ANHAIRQHVDIV-SESQ 298 (473)
Q Consensus 251 VvDEah~l~~-~~~~~~~~~i~~~~------~~~~~~~~------------------------~~~~i~~~~~~~-~~~~ 298 (473)
|+||||++.+ .++...+..+.... ...++++. ....+.+.+... ....
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 252 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH
Confidence 9999999987 67777777766541 11111111 112223333333 3356
Q ss_pred hHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCC
Q 012013 299 KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 378 (473)
Q Consensus 299 k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gid 378 (473)
+...+.+++... ...++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 253 ~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 331 (412)
T 3fht_A 253 KFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 331 (412)
T ss_dssp HHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCC
T ss_pred HHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCC
Confidence 777777777664 4569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCC------CCHHHHHHhhccccCCCCCcEEEEEecccc-HHHHHHHHHHHHHhCCCCC
Q 012013 379 VKDVKYVINYDFP------GSLEDYVHRIGRTGRAGAKGTAYTFFTAAN-ARFAKELITILEEAGQKVS 440 (473)
Q Consensus 379 i~~v~~Vi~~~~p------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ 440 (473)
+|++++||++|+| .+..+|+||+||+||.|+.|.|++++++.+ ...++.+.+.+...-..++
T Consensus 332 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 332 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp CTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred ccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 9999999999999 467899999999999999999999998764 6677777777766555554
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.1e-49 Score=398.41 Aligned_cols=326 Identities=32% Similarity=0.540 Sum_probs=268.9
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCE
Q 012013 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (473)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 174 (473)
...+|+++++++.+++++.+.+|.+|+|+|.++++.++++ +++++++|||+|||++|++|++..+... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 4578999999999999999999999999999999999998 8999999999999999999999886542 23678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecc
Q 012013 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (473)
Q Consensus 175 vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDE 254 (473)
+||++||++|+.|+.+.+.++....++.+...+++...... ..+++|+|+||++|.+++......+.++++||+||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999999988888888888776543222 34679999999999999988877789999999999
Q ss_pred hhhhhh-CCCHHHHHHHHhhh------hcCCCCcc------------------------ccccceeeEEec-CchhhHHH
Q 012013 255 ADRMLD-MGFEPQIKKILSQV------IIGSPDLK------------------------ANHAIRQHVDIV-SESQKYNK 302 (473)
Q Consensus 255 ah~l~~-~~~~~~~~~i~~~~------~~~~~~~~------------------------~~~~i~~~~~~~-~~~~k~~~ 302 (473)
||++.+ .++...+..+.... ...++++. ....+.+.+... ....+...
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDV 233 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHH
Confidence 999988 67777776665531 11111111 011222333333 33455566
Q ss_pred HHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 012013 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 382 (473)
Q Consensus 303 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v 382 (473)
+..++... ..+++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 234 l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 312 (395)
T 3pey_A 234 LTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTV 312 (395)
T ss_dssp HHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccC
Confidence 66655543 45799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCC------CHHHHHHhhccccCCCCCcEEEEEecccc-HHHHHHHHHHH
Q 012013 383 KYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN-ARFAKELITIL 432 (473)
Q Consensus 383 ~~Vi~~~~p~------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l 432 (473)
++||++|+|+ |+.+|+||+||+||.|++|.|++|+...+ ......+.+.+
T Consensus 313 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 313 SMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp EEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred CEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHh
Confidence 9999999999 99999999999999999999999998754 34444444444
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.9e-52 Score=418.67 Aligned_cols=347 Identities=33% Similarity=0.560 Sum_probs=157.0
Q ss_pred CCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCC
Q 012013 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 172 (473)
Q Consensus 93 ~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 172 (473)
...++..+|+++++++.+.+.+...+|.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~ 89 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKA 89 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCS
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCC
Confidence 345667889999999999999999999999999999999999999999999999999999999999886542 236
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEee
Q 012013 173 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (473)
Q Consensus 173 ~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVv 252 (473)
+++||++|+++|+.|+.+.+.++....++.+..++|+.........+. +++|+|+||++|.+.+......+.++++||+
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 789999999999999999999998888899999998877655444443 5799999999999999887777889999999
Q ss_pred cchhhhhhCCCHHHHHHHHhhh------hcCCCCcccc------------------------ccceeeEEecC-chhhHH
Q 012013 253 DEADRMLDMGFEPQIKKILSQV------IIGSPDLKAN------------------------HAIRQHVDIVS-ESQKYN 301 (473)
Q Consensus 253 DEah~l~~~~~~~~~~~i~~~~------~~~~~~~~~~------------------------~~i~~~~~~~~-~~~k~~ 301 (473)
||||++.+.++...+..++... ...++++... ..+.+.+..+. ...+..
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYE 248 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHH
Confidence 9999999999999888886542 2222222110 00111111111 122445
Q ss_pred HHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC
Q 012013 302 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 381 (473)
Q Consensus 302 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~ 381 (473)
.+.+++... ...++||||+++++++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 249 ~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~ 327 (394)
T 1fuu_A 249 CLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCccc
Confidence 555555543 3468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHh
Q 012013 382 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 446 (473)
Q Consensus 382 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~ 446 (473)
+++||++++|+++..|+||+||+||.|++|.|++|+++.+...++.+.+.+...-.++|..+.++
T Consensus 328 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (394)
T 1fuu_A 328 VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL 392 (394)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhh
Confidence 99999999999999999999999999999999999999999899999888888877777766543
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.3e-48 Score=382.28 Aligned_cols=309 Identities=34% Similarity=0.573 Sum_probs=255.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
|++.+.+++.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++.. +.++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999999998764 56799999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHH
Q 012013 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP 265 (473)
Q Consensus 186 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~ 265 (473)
.|+.+.+.++....++.+..++++.....+...+. .++|+|+||++|.+++......+.++++||+||||++.++++..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999998888889999998877655555544 48999999999999988877778899999999999999999999
Q ss_pred HHHHHHhhhh------cCCCCccc---------------------cccceeeEEecCchhhHHHHHHHHHhHhCCCeEEE
Q 012013 266 QIKKILSQVI------IGSPDLKA---------------------NHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILI 318 (473)
Q Consensus 266 ~~~~i~~~~~------~~~~~~~~---------------------~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lV 318 (473)
.+..++.... +.++++.. ...+.+.+...... .....+.+.. ..+.++||
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~lv 225 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDD--WRSKVQALRE-NKDKGVIV 225 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSS--SHHHHHHHHT-CCCSSEEE
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChH--HHHHHHHHHh-CCCCcEEE
Confidence 8888876521 11111110 01112222222222 2223344433 34568999
Q ss_pred EeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHH
Q 012013 319 FMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 398 (473)
Q Consensus 319 f~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~ 398 (473)
||+++++++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|+
T Consensus 226 f~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~ 301 (337)
T 2z0m_A 226 FVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYI 301 (337)
T ss_dssp ECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHH
T ss_pred EEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhh
Confidence 9999999999999886 588999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHH
Q 012013 399 HRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 434 (473)
Q Consensus 399 Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 434 (473)
||+||+||.|++|.|++|+. .+....+++.+.+..
T Consensus 302 Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 302 HRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred HhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 99999999999999999999 788888887776643
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.2e-50 Score=414.32 Aligned_cols=335 Identities=29% Similarity=0.480 Sum_probs=142.7
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCE
Q 012013 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (473)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 174 (473)
+..+|++++|++.+++.|...+|..|+|+|.++++.++.+ ++++++||||||||++|++|++..+... ..+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~~ 164 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSCC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCCc
Confidence 3678999999999999999999999999999999999987 8999999999999999999998876542 23568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHc-cCccccceeEEee
Q 012013 175 VLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVL 252 (473)
Q Consensus 175 vlil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~vVv 252 (473)
+|||+||++|+.|+.+.+.++.... .+.+....++....... ...++|+|+||++|.+++.+ ....+.++++|||
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 9999999999999999999887643 46666666665443222 34578999999999999866 3456789999999
Q ss_pred cchhhhhh-CCCHHHHHHHHhhh------hcCCCCcccc------------------------ccceeeEEecC-chhhH
Q 012013 253 DEADRMLD-MGFEPQIKKILSQV------IIGSPDLKAN------------------------HAIRQHVDIVS-ESQKY 300 (473)
Q Consensus 253 DEah~l~~-~~~~~~~~~i~~~~------~~~~~~~~~~------------------------~~i~~~~~~~~-~~~k~ 300 (473)
||||++++ .++...+..+.... .+.++++... ..+.+.+..+. ...+.
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKF 321 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHH
Confidence 99999987 57777777666541 1222221110 11111111111 23444
Q ss_pred HHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC
Q 012013 301 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 380 (473)
Q Consensus 301 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~ 380 (473)
..+..++... ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 322 ~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip 400 (479)
T 3fmp_B 322 QALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 400 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccc
Confidence 5555555443 345899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCC------CHHHHHHhhccccCCCCCcEEEEEecccc-HHHHHHHHHHHHHhCCCCC
Q 012013 381 DVKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN-ARFAKELITILEEAGQKVS 440 (473)
Q Consensus 381 ~v~~Vi~~~~p~------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ 440 (473)
++++||+||+|. +...|+||+||+||.|+.|.|++|+++.+ ...++.+.+.+...-..++
T Consensus 401 ~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 401 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp -------------------------------------------------------------------
T ss_pred cCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 999999999994 56899999999999999999999998765 6677777777765555444
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=5.6e-48 Score=402.30 Aligned_cols=316 Identities=21% Similarity=0.330 Sum_probs=251.0
Q ss_pred cCCcc--cCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCE
Q 012013 98 VKSFR--DVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (473)
Q Consensus 98 ~~~f~--~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 174 (473)
...|. ++++++.+.+.|.+ +||..|+|+|.++|+.+++++++++++|||+|||++|++|++.. ..+
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~ 86 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGF 86 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSE
T ss_pred hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCc
Confidence 34454 57888999999998 69999999999999999999999999999999999999999752 458
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH---h---hcCCcEEEeChHHHH------HHHHccCc
Q 012013 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L---QKGVEIVIATPGRLI------DMLESHNT 242 (473)
Q Consensus 175 vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~---~~~~~Iiv~Tp~~l~------~~l~~~~~ 242 (473)
+|||+|+++|+.|+.+.+.++ ++.+..+.++......... + ...++|+|+||++|. +.+.. ..
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~ 161 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AY 161 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HH
T ss_pred EEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hh
Confidence 999999999999999999997 4677888777655433221 1 346899999999874 22322 33
Q ss_pred cccceeEEeecchhhhhhCC--CHHHHHHH--Hhh------hhcCCCCccc-----------------------ccccee
Q 012013 243 NLRRVTYLVLDEADRMLDMG--FEPQIKKI--LSQ------VIIGSPDLKA-----------------------NHAIRQ 289 (473)
Q Consensus 243 ~l~~~~~vVvDEah~l~~~~--~~~~~~~i--~~~------~~~~~~~~~~-----------------------~~~i~~ 289 (473)
.+.++++|||||||++.+++ |++.+..+ +.. +..-+++... ..++..
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~ 241 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYY 241 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEE
T ss_pred hccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEE
Confidence 46689999999999999988 77665442 111 0111111100 011111
Q ss_pred eEEecC--chhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 012013 290 HVDIVS--ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 367 (473)
Q Consensus 290 ~~~~~~--~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iL 367 (473)
.+.... ...+...+.+++.....+.++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 242 ~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~Vl 321 (591)
T 2v1x_A 242 EVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVV 321 (591)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEE
T ss_pred EEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 111111 133455666666555466799999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHH
Q 012013 368 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 429 (473)
Q Consensus 368 vaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 429 (473)
|||+++++|||+|++++||++++|.|++.|+||+||+||.|++|.|++|+++.|...+..++
T Consensus 322 VAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 322 VATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp EECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred EEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988776655544
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.7e-48 Score=397.71 Aligned_cols=316 Identities=19% Similarity=0.329 Sum_probs=253.9
Q ss_pred CCcccCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEE
Q 012013 99 KSFRDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (473)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 177 (473)
.+|+++++++.+.+.|.+ .||..|+|+|.++|+.+++++++++++|||+|||++|++|++.. ...+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 468999999999999998 89999999999999999999999999999999999999998743 357999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchH---Hh-hcCCcEEEeChHHHHHHHHccCccccceeEEeec
Q 012013 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (473)
Q Consensus 178 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvD 253 (473)
|+|+++|+.|+.+.+.++ ++.+..+.++........ .+ ...++|+|+||++|............++++||||
T Consensus 71 i~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred ECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 999999999999999886 366777777665433221 12 3458999999999863211112234679999999
Q ss_pred chhhhhhCC--CHHHHHHHHhh--------hhcCCCCcccc---------------------ccceeeEEecCchhhHHH
Q 012013 254 EADRMLDMG--FEPQIKKILSQ--------VIIGSPDLKAN---------------------HAIRQHVDIVSESQKYNK 302 (473)
Q Consensus 254 Eah~l~~~~--~~~~~~~i~~~--------~~~~~~~~~~~---------------------~~i~~~~~~~~~~~k~~~ 302 (473)
|||++.+++ |++.+..+... +..-+++.... ......+.+.....+...
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~ 226 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQ 226 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSHHHH
T ss_pred CccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCHHHH
Confidence 999999987 77666544221 00011110000 000111223334566777
Q ss_pred HHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 012013 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 382 (473)
Q Consensus 303 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v 382 (473)
+.+++... .+.++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++
T Consensus 227 l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v 305 (523)
T 1oyw_A 227 LMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNV 305 (523)
T ss_dssp HHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTC
T ss_pred HHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCc
Confidence 88888764 45689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHH
Q 012013 383 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 430 (473)
Q Consensus 383 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 430 (473)
++||++++|.|++.|+||+||+||.|++|.|++|+++.|....+.+++
T Consensus 306 ~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp CEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred cEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988776665554
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-48 Score=399.27 Aligned_cols=358 Identities=28% Similarity=0.446 Sum_probs=225.6
Q ss_pred CHHHHHHHHHhccce-eccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCChh
Q 012013 74 SEREVEEYRQQREIT-VEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKT 150 (473)
Q Consensus 74 ~~~~~~~~~~~~~i~-~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT 150 (473)
+.++...+.....+. +.....|.+...|...++++.+.+.+.+.++..|+++|.++++.++++ +++++++|||||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT 172 (508)
T 3fho_A 93 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKT 172 (508)
T ss_dssp ----------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHH
Confidence 344444444443332 222233455666777889999999999999999999999999999998 89999999999999
Q ss_pred HHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeCh
Q 012013 151 LAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATP 230 (473)
Q Consensus 151 ~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp 230 (473)
++|+++++..+... ..++++||++|+++|+.|+.+.+.++.....+.+...+++..... ....++|+|+||
T Consensus 173 ~~~~~~il~~l~~~-----~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~ 243 (508)
T 3fho_A 173 AAFALTMLSRVDAS-----VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTP 243 (508)
T ss_dssp HHHHHHHHHHSCTT-----CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECH
T ss_pred HHHHHHHHHHHHhC-----CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECH
Confidence 99999999887543 235689999999999999999999998777777666655543322 133689999999
Q ss_pred HHHHHHHHccCccccceeEEeecchhhhhh-CCCHHHHHHHHhhh------hcCCCCccc--------------------
Q 012013 231 GRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQV------IIGSPDLKA-------------------- 283 (473)
Q Consensus 231 ~~l~~~l~~~~~~l~~~~~vVvDEah~l~~-~~~~~~~~~i~~~~------~~~~~~~~~-------------------- 283 (473)
++|.+.+......+.++++||+||||++.+ .++...+..+.... ...++++..
T Consensus 244 ~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~ 323 (508)
T 3fho_A 244 GTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKT 323 (508)
T ss_dssp HHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCC
T ss_pred HHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEecc
Confidence 999999988877789999999999999988 67888877776542 122222111
Q ss_pred ----cccceeeEEec-CchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHH
Q 012013 284 ----NHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSE 358 (473)
Q Consensus 284 ----~~~i~~~~~~~-~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~ 358 (473)
...+.+.+... ....+...+.+++... ..+++||||+++.+++.+++.|...++.+..+||+++..+|..+++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~ 402 (508)
T 3fho_A 324 EELSVEGIKQLYMDCQSEEHKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDS 402 (508)
T ss_dssp CC----CCCCEEEEC--CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHH
T ss_pred ccCCcccceEEEEECCchHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Confidence 01112222222 3445666666666554 45699999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEecccccCCCCCCCCEEEEcCCC------CCHHHHHHhhccccCCCCCcEEEEEecc-ccHHHHHHHHHH
Q 012013 359 FKAGKSPIMTATDVAARGLDVKDVKYVINYDFP------GSLEDYVHRIGRTGRAGAKGTAYTFFTA-ANARFAKELITI 431 (473)
Q Consensus 359 f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~l~~~ 431 (473)
|++|+.+|||||+++++|+|+|++++||++++| .++..|+||+||+||.|++|.|++|+.. .+...++.+.+.
T Consensus 403 f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~ 482 (508)
T 3fho_A 403 FRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEY 482 (508)
T ss_dssp HHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHH
T ss_pred HHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 7899999999999999999999999985 455566677666
Q ss_pred HHHhCCCCCH
Q 012013 432 LEEAGQKVSP 441 (473)
Q Consensus 432 l~~~~~~~~~ 441 (473)
+...-..+|.
T Consensus 483 ~~~~i~~l~~ 492 (508)
T 3fho_A 483 FQRPITRVPT 492 (508)
T ss_dssp SCCCCC----
T ss_pred HCCCcccCCC
Confidence 6655555553
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.5e-46 Score=376.05 Aligned_cols=300 Identities=23% Similarity=0.301 Sum_probs=243.1
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHH
Q 012013 110 VMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (473)
Q Consensus 110 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~ 189 (473)
+.+.+.+....+|+|+|.++++.+++++++++++|||+|||++|++|++..+.. ++++||++||++|+.|+.
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~--------~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC--------CCEEEEEECCHHHHHHHH
Confidence 444555433348999999999999999999999999999999999888876632 678999999999999999
Q ss_pred HHHHHhccCCCceEEEEEcCccC---ccchHHhhcC-CcEEEeChHHHHHHHHccCccccceeEEeecchhhhh------
Q 012013 190 QESTKFGASSKIKSTCIYGGVPK---GPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML------ 259 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~------ 259 (473)
+.+.+++. .++++..++|+... ..+...+..+ ++|+|+||++|.+++.. ..+.++++||+||||++.
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchh
Confidence 99999987 78899999999876 4455566555 89999999999888765 456789999999998665
Q ss_pred ----h-CCCHHH-HHHHHhhh-----------------hcCCCC-ccc---------------------cccceeeEEec
Q 012013 260 ----D-MGFEPQ-IKKILSQV-----------------IIGSPD-LKA---------------------NHAIRQHVDIV 294 (473)
Q Consensus 260 ----~-~~~~~~-~~~i~~~~-----------------~~~~~~-~~~---------------------~~~i~~~~~~~ 294 (473)
+ ++|.+. +..++..+ ...+++ ... ...+.+.+.
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-- 236 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRI-- 236 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEE--
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchheee--
Confidence 4 778877 66666532 122222 110 011112221
Q ss_pred CchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeE-EecCCCCHHHHHHHHHHHhcCCCcEEEE----
Q 012013 295 SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL-SIHGDKSQAERDWVLSEFKAGKSPIMTA---- 369 (473)
Q Consensus 295 ~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~-~ihg~~~~~~r~~~~~~f~~g~~~iLva---- 369 (473)
...+...+.+++... +.++||||+++..++.+++.|...++.+. .+||. +|. ++.|++|+.+||||
T Consensus 237 -~~~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~ 307 (414)
T 3oiy_A 237 -SSRSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAY 307 (414)
T ss_dssp -SSCCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCT
T ss_pred -ccCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCc
Confidence 225677778888773 47899999999999999999999999998 99985 444 99999999999999
Q ss_pred ecccccCCCCCC-CCEEEEcCCC--CCHHHHHHhhccccCCC----CCcEEEEEeccccHHHHHHHHHHHH
Q 012013 370 TDVAARGLDVKD-VKYVINYDFP--GSLEDYVHRIGRTGRAG----AKGTAYTFFTAANARFAKELITILE 433 (473)
Q Consensus 370 T~~~~~Gidi~~-v~~Vi~~~~p--~s~~~~~Qr~GR~gR~g----~~g~~~~~~~~~~~~~~~~l~~~l~ 433 (473)
|+++++|+|+|+ +++||+||+| .++.+|+||+||+||.| ..|.+++|+ .+...+..+.+.+.
T Consensus 308 T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 308 YGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp TCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred CchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999988 479999998 66777788877777
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=9.4e-46 Score=386.24 Aligned_cols=349 Identities=19% Similarity=0.225 Sum_probs=270.0
Q ss_pred CCCCCCCCcccccccCCccccCCCHHHHHHHHHhcccee-ccCCCCCccCCcccCCCCHHHH---H-HHHHCCCCCCCHH
Q 012013 51 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVM---Q-EISKAGFFEPTPI 125 (473)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~~~~f~~~~l~~~~~---~-~l~~~~~~~~~~~ 125 (473)
|....+.++-+.+...++.+..+|++++..........+ .|+. ++++ +++.+. + .....|| .|+|+
T Consensus 17 r~~k~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~~-------ld~~-l~ea~a~vrea~~r~lG~-~pt~V 87 (844)
T 1tf5_A 17 RTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGAT-------TDDL-LVEAFAVVREASRRVTGM-FPFKV 87 (844)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTCC-------HHHH-HHHHHHHHHHHHHHHHSC-CCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCCC-------hHHH-HHHHHHHHHHHHHHHcCC-CCcHH
Confidence 455566677777888889999999999977776644333 2221 2221 222221 1 1124799 99999
Q ss_pred HHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEE
Q 012013 126 QAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTC 205 (473)
Q Consensus 126 Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~ 205 (473)
|..+++.+++|+ |+.++||+|||++|.+|++...+. ++.++||+||++||.|.++++..+...+++++.+
T Consensus 88 Q~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~ 157 (844)
T 1tf5_A 88 QLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGL 157 (844)
T ss_dssp HHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 999999999998 899999999999999999866543 5679999999999999999999999899999999
Q ss_pred EEcCccCccchHHhhcCCcEEEeChHHH-HHHHHcc------CccccceeEEeecchhhhh-hCC---------------
Q 012013 206 IYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DMG--------------- 262 (473)
Q Consensus 206 ~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~vVvDEah~l~-~~~--------------- 262 (473)
++||.+.. .+....+++|+|+||++| .+++... ...++.+.++||||||+|+ |++
T Consensus 158 i~gg~~~~--~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~ 235 (844)
T 1tf5_A 158 NLNSMSKD--EKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTK 235 (844)
T ss_dssp CCTTSCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCH
T ss_pred EeCCCCHH--HHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchh
Confidence 99997653 344455789999999999 6666543 3457889999999999998 664
Q ss_pred CHHHHHHHHhhhh--------------------------------cCCCCcc-----------c----------------
Q 012013 263 FEPQIKKILSQVI--------------------------------IGSPDLK-----------A---------------- 283 (473)
Q Consensus 263 ~~~~~~~i~~~~~--------------------------------~~~~~~~-----------~---------------- 283 (473)
|.+++..|+..+. +-+++.. +
T Consensus 236 ~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~ 315 (844)
T 1tf5_A 236 LYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQ 315 (844)
T ss_dssp HHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTE
T ss_pred HHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCe
Confidence 4456666655432 1111100 0
Q ss_pred ---------------------------------------cccce------------------------------------
Q 012013 284 ---------------------------------------NHAIR------------------------------------ 288 (473)
Q Consensus 284 ---------------------------------------~~~i~------------------------------------ 288 (473)
...+.
T Consensus 316 v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~I 395 (844)
T 1tf5_A 316 VVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTI 395 (844)
T ss_dssp EEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEEC
T ss_pred eEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEe
Confidence 00000
Q ss_pred -----------eeEEecCchhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHH
Q 012013 289 -----------QHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVL 356 (473)
Q Consensus 289 -----------~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~ 356 (473)
+.+.......|...|.+.+... ..+.++||||+|++.++.|+..|...|+++.++||++.+.+|..+.
T Consensus 396 Ptn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~ 475 (844)
T 1tf5_A 396 PTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIE 475 (844)
T ss_dssp CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHT
T ss_pred cCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHH
Confidence 0022234567888888888764 4567899999999999999999999999999999999888887666
Q ss_pred HHHhcCCCcEEEEecccccCCCCC--------CCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 357 SEFKAGKSPIMTATDVAARGLDVK--------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 357 ~~f~~g~~~iLvaT~~~~~Gidi~--------~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
+.|+.| .|+|||++++||+||+ ++.+||+++.|.|...|+||+||+||.|.+|.+++|++..|.
T Consensus 476 ~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 476 EAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 666665 6999999999999999 788999999999999999999999999999999999998764
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4e-45 Score=382.13 Aligned_cols=299 Identities=21% Similarity=0.287 Sum_probs=192.3
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 012013 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 198 (473)
..+|+|+|.++++.+++++++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.||.+++.++...
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999999998887643 123678999999999999999999999887
Q ss_pred CCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCc-cccceeEEeecchhhhhhCCCHHHH-HHHHhh---
Q 012013 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGFEPQI-KKILSQ--- 273 (473)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~vVvDEah~l~~~~~~~~~-~~i~~~--- 273 (473)
.++.+..++|+.....+...+..+++|+|+||++|.+++..... .+.++++|||||||++.+++....+ ..++..
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 78999999999887777777777899999999999999988766 7889999999999999877643332 122211
Q ss_pred -------hhcCCCCcccc---------------------------c----c-------ceeeEEec--------------
Q 012013 274 -------VIIGSPDLKAN---------------------------H----A-------IRQHVDIV-------------- 294 (473)
Q Consensus 274 -------~~~~~~~~~~~---------------------------~----~-------i~~~~~~~-------------- 294 (473)
+...++++... . . ........
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 11111111000 0 0 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 012013 295 -------------------------------------------------------------------------------- 294 (473)
Q Consensus 295 -------------------------------------------------------------------------------- 294 (473)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred -----------------------------------------------CchhhHHHHHHHHHhH---hCCCeEEEEeCChH
Q 012013 295 -----------------------------------------------SESQKYNKLVKLLEDI---MDGSRILIFMDTKK 324 (473)
Q Consensus 295 -----------------------------------------------~~~~k~~~l~~~l~~~---~~~~~~lVf~~~~~ 324 (473)
....|...|.++|.+. ..+.++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 0134556666666554 34579999999999
Q ss_pred HHHHHHHHHHhC------------CCCeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEecccccCCCCCCCCEEEEcCCC
Q 012013 325 GCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYDFP 391 (473)
Q Consensus 325 ~~~~l~~~L~~~------------~~~~~~ihg~~~~~~r~~~~~~f~~-g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p 391 (473)
.++.+++.|... |.....+||++++.+|..+++.|++ |+++|||||+++++|||+|++++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999775 4455567888999999999999999 999999999999999999999999999999
Q ss_pred CCHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 392 GSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 392 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
+|+..|+||+|| ||. .+|.+++|++..+.
T Consensus 482 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp SCHHHHHHC----------CCEEEEESCHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 999999999999 999 88999999998754
No 21
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.3e-44 Score=378.03 Aligned_cols=302 Identities=22% Similarity=0.306 Sum_probs=219.5
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 199 (473)
.+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.||.+++.++....
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4799999999999999999999999999999999999999887643 1236789999999999999999999998888
Q ss_pred CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCc-cccceeEEeecchhhhhhCCC-HHHHHHHHhh----
Q 012013 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGF-EPQIKKILSQ---- 273 (473)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~vVvDEah~l~~~~~-~~~~~~i~~~---- 273 (473)
++.+..++|+.....+...+..+++|+|+||++|.+++..... .+.++++|||||||++.+.+. ...+...+..
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 8999999999987777777777899999999999999988766 688999999999999987642 2222222221
Q ss_pred -------hhcCCCCcccc---------------------ccc-----------------eeeEEec--------------
Q 012013 274 -------VIIGSPDLKAN---------------------HAI-----------------RQHVDIV-------------- 294 (473)
Q Consensus 274 -------~~~~~~~~~~~---------------------~~i-----------------~~~~~~~-------------- 294 (473)
+..-++++... ..+ .......
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQ 239 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHH
Confidence 11111111000 000 0000000
Q ss_pred --------------------------------------------------------------------------------
Q 012013 295 -------------------------------------------------------------------------------- 294 (473)
Q Consensus 295 -------------------------------------------------------------------------------- 294 (473)
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (555)
T 3tbk_A 240 LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISED 319 (555)
T ss_dssp HHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence
Q ss_pred ------------------------------------------------CchhhHHHHHHHHHhHh---CCCeEEEEeCCh
Q 012013 295 ------------------------------------------------SESQKYNKLVKLLEDIM---DGSRILIFMDTK 323 (473)
Q Consensus 295 ------------------------------------------------~~~~k~~~l~~~l~~~~---~~~~~lVf~~~~ 323 (473)
....|...|.++|.... ...++||||+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~ 399 (555)
T 3tbk_A 320 AQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTR 399 (555)
T ss_dssp SCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSH
T ss_pred hhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcH
Confidence 01345566666666542 347999999999
Q ss_pred HHHHHHHHHHHhCC----C--------CeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEecccccCCCCCCCCEEEEcCC
Q 012013 324 KGCDQITRQLRMDG----W--------PALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYDF 390 (473)
Q Consensus 324 ~~~~~l~~~L~~~~----~--------~~~~ihg~~~~~~r~~~~~~f~~-g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~ 390 (473)
..++.+++.|...+ + ....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+||+
T Consensus 400 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 400 ALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY 479 (555)
T ss_dssp HHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESC
T ss_pred HHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC
Confidence 99999999998764 3 34455669999999999999999 99999999999999999999999999999
Q ss_pred CCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHH
Q 012013 391 PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 426 (473)
Q Consensus 391 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 426 (473)
|+|+..|+||+|| ||. ..|.+++|+++.+.....
T Consensus 480 p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 480 VGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp CSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred CCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 9999999999999 999 899999999987665443
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.3e-43 Score=379.07 Aligned_cols=312 Identities=20% Similarity=0.257 Sum_probs=248.4
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEE
Q 012013 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175 (473)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 175 (473)
+..+|+++++++.+.+.+...+|.+|+|+|.++++. +.++++++++||||||||+++.++++..+... +.++
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~i 78 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKA 78 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEE
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeE
Confidence 346799999999999999999999999999999999 78899999999999999999999999887642 5789
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecch
Q 012013 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 255 (473)
Q Consensus 176 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEa 255 (473)
||++|+++||.|+.+.++++. ..++++...+|+....... ...++|+|+||++|..++......+.++++||+|||
T Consensus 79 l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~ 154 (715)
T 2va8_A 79 IYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDEL 154 (715)
T ss_dssp EEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSG
T ss_pred EEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEech
Confidence 999999999999999996654 3478888888876654432 236899999999999998887666899999999999
Q ss_pred hhhhhCCCHHHHHHHHhhh-----hcCCCCccc------------------cccceeeE------------EecC-----
Q 012013 256 DRMLDMGFEPQIKKILSQV-----IIGSPDLKA------------------NHAIRQHV------------DIVS----- 295 (473)
Q Consensus 256 h~l~~~~~~~~~~~i~~~~-----~~~~~~~~~------------------~~~i~~~~------------~~~~----- 295 (473)
|.+.+..+...++.++... ...++++.. ...+...+ ....
T Consensus 155 H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 155 HYLNDPERGPVVESVTIRAKRRNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp GGGGCTTTHHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred hhcCCcccchHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhh
Confidence 9999888888887776542 222333211 00111111 1111
Q ss_pred ---chhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCC-----------------------------------
Q 012013 296 ---ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG----------------------------------- 337 (473)
Q Consensus 296 ---~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~----------------------------------- 337 (473)
...+...+.+. +..++++||||+++++++.++..|....
T Consensus 235 ~~~~~~~~~~~~~~---~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 311 (715)
T 2va8_A 235 VHGDDAIIAYTLDS---LSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLI 311 (715)
T ss_dssp EESSSHHHHHHHHH---HTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHH---HhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence 12233333333 3356799999999999999999997642
Q ss_pred -CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEE----cC-------CCCCHHHHHHhhcccc
Q 012013 338 -WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD-------FPGSLEDYVHRIGRTG 405 (473)
Q Consensus 338 -~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~----~~-------~p~s~~~~~Qr~GR~g 405 (473)
..+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|.||+||||
T Consensus 312 ~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaG 391 (715)
T 2va8_A 312 SKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAG 391 (715)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBC
T ss_pred hcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcC
Confidence 24889999999999999999999999999999999999999999999999 99 7999999999999999
Q ss_pred CCCC--CcEEEEEeccccH
Q 012013 406 RAGA--KGTAYTFFTAANA 422 (473)
Q Consensus 406 R~g~--~g~~~~~~~~~~~ 422 (473)
|.|. +|.|+++++..+.
T Consensus 392 R~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 392 RPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp CTTTCSCEEEEEECSCGGG
T ss_pred CCCCCCCceEEEEeCCchH
Confidence 9984 6999999987653
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.7e-44 Score=387.31 Aligned_cols=308 Identities=22% Similarity=0.314 Sum_probs=210.1
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 012013 112 QEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (473)
Q Consensus 112 ~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~ 191 (473)
+++...++.+|+|+|.++++.+++++++++++|||+|||++|++|++..+...+ .+.+.++|||+||++|+.||.++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999998887642 12246899999999999999999
Q ss_pred HHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCc-cccceeEEeecchhhhhhCC-C------
Q 012013 192 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG-F------ 263 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~vVvDEah~l~~~~-~------ 263 (473)
+.++....++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++|||||||++.... +
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999988788999999999887777777777899999999999999988766 68899999999999954322 0
Q ss_pred -------------------------------HHHHHHHHhhhhcC--------------------CCC-------cccc-
Q 012013 264 -------------------------------EPQIKKILSQVIIG--------------------SPD-------LKAN- 284 (473)
Q Consensus 264 -------------------------------~~~~~~i~~~~~~~--------------------~~~-------~~~~- 284 (473)
...+..+....... .+. ....
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 11122221110000 000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 012013 285 -------------------------------------------------------------------------------- 284 (473)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (473)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred ------------------------------ccceeeEE----------------ecCchhhHHHHHHHHHhHh---CCCe
Q 012013 285 ------------------------------HAIRQHVD----------------IVSESQKYNKLVKLLEDIM---DGSR 315 (473)
Q Consensus 285 ------------------------------~~i~~~~~----------------~~~~~~k~~~l~~~l~~~~---~~~~ 315 (473)
..+.+.+. ......|...|.+++.... .+.+
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 00000000 0013457777778887763 4568
Q ss_pred EEEEeCChHHHHHHHHHHHhCC----CCeEEe--------cCCCCHHHHHHHHHHHhc-CCCcEEEEecccccCCCCCCC
Q 012013 316 ILIFMDTKKGCDQITRQLRMDG----WPALSI--------HGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDV 382 (473)
Q Consensus 316 ~lVf~~~~~~~~~l~~~L~~~~----~~~~~i--------hg~~~~~~r~~~~~~f~~-g~~~iLvaT~~~~~Gidi~~v 382 (473)
+||||+++..++.+++.|...+ +.+..+ |++|++.+|..++++|++ |+.+|||||+++++|||+|++
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999887 888888 559999999999999998 999999999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHH
Q 012013 383 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 424 (473)
Q Consensus 383 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 424 (473)
++||+||+|+|+.+|+||+|| ||. ++|.++++++..+...
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp SEEEEESCC--CCCC-----------CCCEEEEEESCHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHH
Confidence 999999999999999999999 998 8899999999876643
No 24
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.2e-43 Score=382.70 Aligned_cols=302 Identities=21% Similarity=0.278 Sum_probs=197.4
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
..++.+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.||.++++++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999999999999999999999999887642 223678999999999999999999999
Q ss_pred ccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCc-cccceeEEeecchhhhhhCCCHHH-HHHHHhh
Q 012013 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGFEPQ-IKKILSQ 273 (473)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~vVvDEah~l~~~~~~~~-~~~i~~~ 273 (473)
....++++..++|+.....+...+..+++|+|+||++|.+++..... .+.++++|||||||++........ +..+...
T Consensus 320 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp HGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred cccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 88778999999999987777777778899999999999999988766 688999999999999887643222 2222211
Q ss_pred ----------hhcCCCCcccc--------------------------------------ccceeeEEecC----------
Q 012013 274 ----------VIIGSPDLKAN--------------------------------------HAIRQHVDIVS---------- 295 (473)
Q Consensus 274 ----------~~~~~~~~~~~--------------------------------------~~i~~~~~~~~---------- 295 (473)
+..-++++... ......+..+.
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHH
T ss_pred hhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHH
Confidence 11111111000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 012013 296 -------------------------------------------------------------------------------- 295 (473)
Q Consensus 296 -------------------------------------------------------------------------------- 295 (473)
T Consensus 480 ~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 559 (797)
T 4a2q_A 480 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (797)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred ---------------------------------------------------chhhHHHHHHHHHhH---hCCCeEEEEeC
Q 012013 296 ---------------------------------------------------ESQKYNKLVKLLEDI---MDGSRILIFMD 321 (473)
Q Consensus 296 ---------------------------------------------------~~~k~~~l~~~l~~~---~~~~~~lVf~~ 321 (473)
...|...|.++|... ..+.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~ 639 (797)
T 4a2q_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (797)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 133555566666553 34569999999
Q ss_pred ChHHHHHHHHHHHhC------------CCCeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEecccccCCCCCCCCEEEEc
Q 012013 322 TKKGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINY 388 (473)
Q Consensus 322 ~~~~~~~l~~~L~~~------------~~~~~~ihg~~~~~~r~~~~~~f~~-g~~~iLvaT~~~~~Gidi~~v~~Vi~~ 388 (473)
++..++.+++.|... |.....+||++++.+|..+++.|++ |.++|||||+++++|||+|++++||+|
T Consensus 640 ~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (797)
T ss_dssp SHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEE
T ss_pred cHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999763 4556677899999999999999999 999999999999999999999999999
Q ss_pred CCCCCHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 389 DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 389 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
|+|+|+..|+||+|| ||. ++|.+++|++..+.
T Consensus 720 d~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp SCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 999999999999999 999 89999999988654
No 25
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.6e-43 Score=377.46 Aligned_cols=308 Identities=19% Similarity=0.233 Sum_probs=250.5
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEE
Q 012013 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (473)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 178 (473)
+|+++++++.+.+.+.+.+|.+|+|+|.++++. +.+++++++++|||||||++|.++++..+... +.++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 589999999999999999999999999999998 88999999999999999999999999887642 5789999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh
Q 012013 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (473)
Q Consensus 179 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l 258 (473)
+|+++||.|+++.++++.. .++++..++|+....... ...++|+|+||++|..++......+.++++||+||||++
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999976653 478888888876554322 246899999999999988877666889999999999999
Q ss_pred hhCCCHHHHHHHHhhh------hcCCCCccccc------------------cceeeE------EecC-----chhhHHHH
Q 012013 259 LDMGFEPQIKKILSQV------IIGSPDLKANH------------------AIRQHV------DIVS-----ESQKYNKL 303 (473)
Q Consensus 259 ~~~~~~~~~~~i~~~~------~~~~~~~~~~~------------------~i~~~~------~~~~-----~~~k~~~l 303 (473)
.++.+...+..++..+ ...++++.... .+...+ .... ...+...+
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELV 230 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCHHHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHH
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCHHHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHH
Confidence 9988888887776543 22223321100 011111 1111 12233444
Q ss_pred HHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhC---------------------------------CCCeEEecCCCCHH
Q 012013 304 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---------------------------------GWPALSIHGDKSQA 350 (473)
Q Consensus 304 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------------------------------~~~~~~ihg~~~~~ 350 (473)
.+.+ ..++++||||+++++++.++..|.+. ...+..+||++++.
T Consensus 231 ~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~ 307 (720)
T 2zj8_A 231 YDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRD 307 (720)
T ss_dssp HHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred HHHH---hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHH
Confidence 4433 34679999999999999999998642 12488999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEE----cC----CCCCHHHHHHhhccccCCCC--CcEEEEEeccc
Q 012013 351 ERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD----FPGSLEDYVHRIGRTGRAGA--KGTAYTFFTAA 420 (473)
Q Consensus 351 ~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~----~~----~p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~ 420 (473)
+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|.||+|||||.|. .|.|+++++..
T Consensus 308 ~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 387 (720)
T 2zj8_A 308 ERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD 387 (720)
T ss_dssp HHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSS
T ss_pred HHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCc
Confidence 9999999999999999999999999999999999998 76 58899999999999999984 68999999887
Q ss_pred c
Q 012013 421 N 421 (473)
Q Consensus 421 ~ 421 (473)
+
T Consensus 388 ~ 388 (720)
T 2zj8_A 388 D 388 (720)
T ss_dssp C
T ss_pred c
Confidence 6
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.3e-43 Score=376.72 Aligned_cols=307 Identities=18% Similarity=0.259 Sum_probs=245.4
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEE
Q 012013 100 SFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (473)
Q Consensus 100 ~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 177 (473)
+|++++ +++.+.+.+.+.+|.+|+|+|.++++.+++++++++++|||||||++|.++++..+.. +.++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577888 9999999999999999999999999999999999999999999999999999988764 567999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhh
Q 012013 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (473)
Q Consensus 178 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 257 (473)
++|+++||.|+.+.++++. ..++++..++|+....... ...++|+|+||++|..++.+....+.++++||+||||.
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDEH---LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSSC---STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchhh---ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 9999999999999997654 4478888888877654332 23689999999999999888766688999999999999
Q ss_pred hhhCCCHHHHHHHHhhh---------hcCCCCcccc------------------ccceeeEE------ecCchh------
Q 012013 258 MLDMGFEPQIKKILSQV---------IIGSPDLKAN------------------HAIRQHVD------IVSESQ------ 298 (473)
Q Consensus 258 l~~~~~~~~~~~i~~~~---------~~~~~~~~~~------------------~~i~~~~~------~~~~~~------ 298 (473)
+.++++...+..++..+ ...++++... ..+...+. ......
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~ 229 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRV 229 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTTCEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEEC
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHhCCCcccCCCCCccceEEEeeCCeeeccCcchhhhhhh
Confidence 99988888777765542 1222222210 01111110 111111
Q ss_pred -hHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhC------------------------------CCCeEEecCCC
Q 012013 299 -KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD------------------------------GWPALSIHGDK 347 (473)
Q Consensus 299 -k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------------------~~~~~~ihg~~ 347 (473)
+...+.+.+ ..++++||||+++++++.++..|... +..+..+||++
T Consensus 230 ~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l 306 (702)
T 2p6r_A 230 KFEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGL 306 (702)
T ss_dssp CHHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTS
T ss_pred hHHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCC
Confidence 334444433 35679999999999999999988642 13578899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEE----cC---CCCCHHHHHHhhccccCCCC--CcEEEEEec
Q 012013 348 SQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD---FPGSLEDYVHRIGRTGRAGA--KGTAYTFFT 418 (473)
Q Consensus 348 ~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~----~~---~p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~ 418 (473)
++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|.||+|||||.|. +|.|+++++
T Consensus 307 ~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 386 (702)
T 2p6r_A 307 LNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVG 386 (702)
T ss_dssp CHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECC
T ss_pred CHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEec
Confidence 9999999999999999999999999999999999999998 66 68899999999999999984 699999998
Q ss_pred ccc
Q 012013 419 AAN 421 (473)
Q Consensus 419 ~~~ 421 (473)
..+
T Consensus 387 ~~~ 389 (702)
T 2p6r_A 387 KRD 389 (702)
T ss_dssp GGG
T ss_pred Ccc
Confidence 876
No 27
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-42 Score=381.40 Aligned_cols=302 Identities=21% Similarity=0.282 Sum_probs=196.7
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
-.++.+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...+.++|||+||++|+.||.++++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999988776532 123677999999999999999999999
Q ss_pred ccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCc-cccceeEEeecchhhhhhCCC-HHHHHHHHhh
Q 012013 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGF-EPQIKKILSQ 273 (473)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~vVvDEah~l~~~~~-~~~~~~i~~~ 273 (473)
....++++..++|+.....+...+..+++|+|+||++|.+++..... .+.++++|||||||++...+. ...+..+...
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp HHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred hcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 88778999999999887777777777889999999999999987766 688999999999999876642 2222222221
Q ss_pred ----------hhcCCCCcccc--------------------------------------ccceeeEEec-----------
Q 012013 274 ----------VIIGSPDLKAN--------------------------------------HAIRQHVDIV----------- 294 (473)
Q Consensus 274 ----------~~~~~~~~~~~--------------------------------------~~i~~~~~~~----------- 294 (473)
+..-+++.... ......+..+
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 11111111000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 012013 295 -------------------------------------------------------------------------------- 294 (473)
Q Consensus 295 -------------------------------------------------------------------------------- 294 (473)
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred --------------------------------------------------CchhhHHHHHHHHHhH---hCCCeEEEEeC
Q 012013 295 --------------------------------------------------SESQKYNKLVKLLEDI---MDGSRILIFMD 321 (473)
Q Consensus 295 --------------------------------------------------~~~~k~~~l~~~l~~~---~~~~~~lVf~~ 321 (473)
....|...|.++|.+. ..+.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 0123455555666654 23569999999
Q ss_pred ChHHHHHHHHHHHhC------------CCCeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEecccccCCCCCCCCEEEEc
Q 012013 322 TKKGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINY 388 (473)
Q Consensus 322 ~~~~~~~l~~~L~~~------------~~~~~~ihg~~~~~~r~~~~~~f~~-g~~~iLvaT~~~~~Gidi~~v~~Vi~~ 388 (473)
++..++.|++.|... |.....+||+|++.+|..++++|++ |.++|||||+++++|||+|++++||+|
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEe
Confidence 999999999999876 4555567899999999999999999 999999999999999999999999999
Q ss_pred CCCCCHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 389 DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 389 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
|+|+|+..|+||+|| ||. .+|.+++|++..+.
T Consensus 720 D~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp SCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999 999 88999999987644
No 28
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-43 Score=388.95 Aligned_cols=303 Identities=17% Similarity=0.209 Sum_probs=235.9
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEE
Q 012013 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (473)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 178 (473)
..|..+++++.+...+....+..|+|+|.++++.++.+++++++||||||||++|++|++..+.. ++++||+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl 233 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYT 233 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEE
Confidence 35666777777766677777889999999999999999999999999999999999999988754 6789999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh
Q 012013 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (473)
Q Consensus 179 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l 258 (473)
+||++|+.|+++.+.++.. .+..++|+... ..+++|+|+||++|.+++......+.++++|||||||++
T Consensus 234 ~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l 302 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM 302 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT
T ss_pred cCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc
Confidence 9999999999999999764 46667777654 345899999999999999988777899999999999999
Q ss_pred hhCCCHHHHHHHHhhh------hcCCCCcccc------------------------ccceeeEE---------ecCchh-
Q 012013 259 LDMGFEPQIKKILSQV------IIGSPDLKAN------------------------HAIRQHVD---------IVSESQ- 298 (473)
Q Consensus 259 ~~~~~~~~~~~i~~~~------~~~~~~~~~~------------------------~~i~~~~~---------~~~~~~- 298 (473)
.++++...+..++..+ ...++++... ..+...+. .+....
T Consensus 303 ~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~ 382 (1108)
T 3l9o_A 303 RDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKST 382 (1108)
T ss_dssp TSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTE
T ss_pred cccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccc
Confidence 9988888888776541 1122221110 00111110 000000
Q ss_pred ---------------------------------------h---HHHHHHHHHhHh--CCCeEEEEeCChHHHHHHHHHHH
Q 012013 299 ---------------------------------------K---YNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLR 334 (473)
Q Consensus 299 ---------------------------------------k---~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~ 334 (473)
+ ...+..++..+. ...++||||+++..|+.++..|.
T Consensus 383 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~ 462 (1108)
T 3l9o_A 383 FREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMS 462 (1108)
T ss_dssp ECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTC
T ss_pred hhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHH
Confidence 0 223333333332 34589999999999999999985
Q ss_pred hCCCC---------------------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 012013 335 MDGWP---------------------------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 375 (473)
Q Consensus 335 ~~~~~---------------------------------------~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~ 375 (473)
..++. +..+||+|++.+|..+++.|++|.++|||||+++++
T Consensus 463 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~ 542 (1108)
T 3l9o_A 463 KLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSI 542 (1108)
T ss_dssp SHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCS
T ss_pred hccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhc
Confidence 42221 688999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCCC--------CCHHHHHHhhccccCCC--CCcEEEEEeccc
Q 012013 376 GLDVKDVKYVINYDFP--------GSLEDYVHRIGRTGRAG--AKGTAYTFFTAA 420 (473)
Q Consensus 376 Gidi~~v~~Vi~~~~p--------~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 420 (473)
|||+|++++||+++.| .|+.+|+||+|||||.| ..|.|++++.+.
T Consensus 543 GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 543 GLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999977653 47788999999999999 568888888775
No 29
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.7e-41 Score=353.39 Aligned_cols=335 Identities=19% Similarity=0.268 Sum_probs=256.7
Q ss_pred CccccCCCHHHHH----HHHHhccceeccCCCCCccCCcccCCCCHHHH---HHH-HHCCCCCCCHHHHHHHHHHhcCCc
Q 012013 67 SPSVAAMSEREVE----EYRQQREITVEGRDVPKPVKSFRDVGFPDYVM---QEI-SKAGFFEPTPIQAQGWPMALKGRD 138 (473)
Q Consensus 67 ~~~~~~~~~~~~~----~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~---~~l-~~~~~~~~~~~Q~~~i~~i~~~~~ 138 (473)
.+.+..+|++++. +|+......+.|+ +++++ +|+.+. ++. ...|+ .|+|+|..+++.+++|+
T Consensus 58 e~~~~~Lsd~eL~~kt~efk~rl~~~~~ge-------~ld~~-lpeafA~vrEa~~R~lG~-rP~~VQ~~~ip~Ll~G~- 127 (922)
T 1nkt_A 58 SDDVEKLTDAELRAKTDEFKRRLADQKNPE-------TLDDL-LPEAFAVAREAAWRVLDQ-RPFDVQVMGAAALHLGN- 127 (922)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHCSSSCC-------CHHHH-HHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTE-
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcccCC-------CHHHH-HHHHHHHHHHHHHHHcCC-CCCHHHHHHHHhHhcCC-
Confidence 3567888888884 4443322111121 22332 333322 222 24677 99999999999999988
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH
Q 012013 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 218 (473)
|+.++||+|||++|.+|++...+. ++.|+||+||++||.|.++++..+...+++++.+++||.+. +.+.
T Consensus 128 -Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~--~~r~ 196 (922)
T 1nkt_A 128 -VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTP--DERR 196 (922)
T ss_dssp -EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCH--HHHH
T ss_pred -EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCH--HHHH
Confidence 999999999999999999876654 55799999999999999999999999999999999999764 3344
Q ss_pred hhcCCcEEEeChHHH-HHHHHcc------CccccceeEEeecchhhhh-hC---------------CCHHHHHHHHhhhh
Q 012013 219 LQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DM---------------GFEPQIKKILSQVI 275 (473)
Q Consensus 219 ~~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~vVvDEah~l~-~~---------------~~~~~~~~i~~~~~ 275 (473)
...+++|+|+||++| .++|... ...++.+.++||||||+|+ |. +|...+..|+..+.
T Consensus 197 ~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~ 276 (922)
T 1nkt_A 197 VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLME 276 (922)
T ss_dssp HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSC
T ss_pred HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCc
Confidence 455789999999999 7777654 3456789999999999998 43 35666666665432
Q ss_pred --------------------------------cCCCCccc----------------------------------------
Q 012013 276 --------------------------------IGSPDLKA---------------------------------------- 283 (473)
Q Consensus 276 --------------------------------~~~~~~~~---------------------------------------- 283 (473)
+-+++...
T Consensus 277 ~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~ 356 (922)
T 1nkt_A 277 KDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLI 356 (922)
T ss_dssp BTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCT
T ss_pred ccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccC
Confidence 11111100
Q ss_pred --------------------------cccce-----------------------------------------------ee
Q 012013 284 --------------------------NHAIR-----------------------------------------------QH 290 (473)
Q Consensus 284 --------------------------~~~i~-----------------------------------------------~~ 290 (473)
...+. +.
T Consensus 357 grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d 436 (922)
T 1nkt_A 357 GRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSD 436 (922)
T ss_dssp TCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCC
T ss_pred CccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCc
Confidence 00000 00
Q ss_pred EEecCchhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 012013 291 VDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 369 (473)
Q Consensus 291 ~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLva 369 (473)
+.......|+..+.+.+... ..+.++||||+|++.++.|+..|.+.|+++.++||+..+.++..+.+.|+.| .|+||
T Consensus 437 ~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIA 514 (922)
T 1nkt_A 437 LIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVA 514 (922)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEE
T ss_pred EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEe
Confidence 12234456888888877664 3556899999999999999999999999999999999888888888888887 69999
Q ss_pred ecccccCCCCCCC----------------------------------------------------CEEEEcCCCCCHHHH
Q 012013 370 TDVAARGLDVKDV----------------------------------------------------KYVINYDFPGSLEDY 397 (473)
Q Consensus 370 T~~~~~Gidi~~v----------------------------------------------------~~Vi~~~~p~s~~~~ 397 (473)
|++++||+||+.. .+||+++.|.|...|
T Consensus 515 TnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy 594 (922)
T 1nkt_A 515 TNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRID 594 (922)
T ss_dssp ETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHH
T ss_pred cchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHH
Confidence 9999999999975 499999999999999
Q ss_pred HHhhccccCCCCCcEEEEEeccccHHH
Q 012013 398 VHRIGRTGRAGAKGTAYTFFTAANARF 424 (473)
Q Consensus 398 ~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 424 (473)
.||+||+||.|.+|.+++|++..|..+
T Consensus 595 ~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 595 NQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp HHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred HHHhcccccCCCCeeEEEEechhHHHH
Confidence 999999999999999999999887643
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-41 Score=348.96 Aligned_cols=292 Identities=25% Similarity=0.328 Sum_probs=229.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 200 (473)
+|+|+|.++++.++.+ ++++++|||+|||++++++++..+.. .+.++|||+|+++|+.||.+++.++.....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 7999999999999998 99999999999999999998887652 156799999999999999999999875445
Q ss_pred ceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhh------h
Q 012013 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ------V 274 (473)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~------~ 274 (473)
..+..++|+...... ......++|+|+||+.|.+.+......+.++++|||||||++.+......+...+.. +
T Consensus 81 ~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 578888777655432 233346799999999999998887777889999999999998754333333222221 0
Q ss_pred hcCCCCcccc-----------------------ccc--------eeeEE-------------------------------
Q 012013 275 IIGSPDLKAN-----------------------HAI--------RQHVD------------------------------- 292 (473)
Q Consensus 275 ~~~~~~~~~~-----------------------~~i--------~~~~~------------------------------- 292 (473)
..-++++... ..+ .....
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0001110000 000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 012013 293 -------------------------------------------------------------------------------- 292 (473)
Q Consensus 293 -------------------------------------------------------------------------------- 292 (473)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred ------------------ecCchhhHHHHHHHHHhHh---CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecC------
Q 012013 293 ------------------IVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG------ 345 (473)
Q Consensus 293 ------------------~~~~~~k~~~l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg------ 345 (473)
......|...+.+++.... .+.++||||+++..++.+++.|...++.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 0023446677777777753 5679999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 346 --DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 346 --~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
+++..+|..++++|++|+.+|||||+++++|+|+|++++||++|+|+|+..|+||+||+||.|+ |.++.|+++.+.
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999988 999999998754
No 31
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.5e-42 Score=368.66 Aligned_cols=294 Identities=23% Similarity=0.323 Sum_probs=212.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH-HHHHHHhccC
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI-QQESTKFGAS 198 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~-~~~~~~~~~~ 198 (473)
.+|+|+|.++++.+++++++++++|||+|||++|++|++..+...+. .+.+.++|||+|+++|+.|| .++++++...
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 47999999999999999999999999999999999999887765310 11236799999999999999 9999998765
Q ss_pred CCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHH------HccCccccceeEEeecchhhhhhCC-CHHHHHHHH
Q 012013 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML------ESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKIL 271 (473)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l------~~~~~~l~~~~~vVvDEah~l~~~~-~~~~~~~i~ 271 (473)
.+.+..++|+.........+...++|+|+||++|.+.+ ......+.++++|||||||++.... +...+..++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 58899999998887777777788999999999999888 3444667899999999999875533 222222111
Q ss_pred hh-------------------hhcCCCCcccc-------------------------------ccc-------eeeEEec
Q 012013 272 SQ-------------------VIIGSPDLKAN-------------------------------HAI-------RQHVDIV 294 (473)
Q Consensus 272 ~~-------------------~~~~~~~~~~~-------------------------------~~i-------~~~~~~~ 294 (473)
.. +...+++.... ..+ ...+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 10 11111111110 000 0000000
Q ss_pred C-------------------------------------------------------------------------------
Q 012013 295 S------------------------------------------------------------------------------- 295 (473)
Q Consensus 295 ~------------------------------------------------------------------------------- 295 (473)
.
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred --------------------------------------------------------chhhHHHHHHHHHhHh---C-CCe
Q 012013 296 --------------------------------------------------------ESQKYNKLVKLLEDIM---D-GSR 315 (473)
Q Consensus 296 --------------------------------------------------------~~~k~~~l~~~l~~~~---~-~~~ 315 (473)
...|...|.++|.... . +.+
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 0112222333444322 1 579
Q ss_pred EEEEeCChHHHHHHHHHHHhC------CCCeEEecCC--------CCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC
Q 012013 316 ILIFMDTKKGCDQITRQLRMD------GWPALSIHGD--------KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 381 (473)
Q Consensus 316 ~lVf~~~~~~~~~l~~~L~~~------~~~~~~ihg~--------~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~ 381 (473)
+||||+++..++.+++.|... |+.+..+||+ |++.+|..++++|++|+.+|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEecc
Q 012013 382 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA 419 (473)
Q Consensus 382 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 419 (473)
+++||+||+|+|+..|+||+||+||.| .+++++..
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999976654 45555544
No 32
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.7e-41 Score=353.10 Aligned_cols=333 Identities=20% Similarity=0.267 Sum_probs=249.8
Q ss_pred CCccccCCCHHHHHHHHHhccceec-cCCCCCccCCcccCCCCHHHHHHHH-----HCCCCCCCHHHHHHHHHHhcCCcE
Q 012013 66 ESPSVAAMSEREVEEYRQQREITVE-GRDVPKPVKSFRDVGFPDYVMQEIS-----KAGFFEPTPIQAQGWPMALKGRDL 139 (473)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~p~~~~~f~~~~l~~~~~~~l~-----~~~~~~~~~~Q~~~i~~i~~~~~~ 139 (473)
..+.+..+|++++..........+. |. +++++ +|+ ....+. ..|. .|+|+|..+++.+++|+
T Consensus 23 le~~~~~lsd~eL~~kt~~fk~rl~~g~-------~ld~~-lpe-afA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~-- 90 (853)
T 2fsf_A 23 MEPEMEKLSDEELKGKTAEFRARLEKGE-------VLENL-IPE-AFAVVREASKRVFGM-RHFDVQLLGGMVLNERC-- 90 (853)
T ss_dssp THHHHHHSCHHHHHHHHHHHHHHHHTTC-------CHHHH-HHH-HHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--
T ss_pred hHHHHHhCCHHHHHHHHHHHHHHHHcCC-------Chhhh-hHH-HHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--
Confidence 3456778888888766555333221 21 12332 222 222222 2453 89999999999999998
Q ss_pred EEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHh
Q 012013 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219 (473)
Q Consensus 140 l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~ 219 (473)
|+.++||+|||++|.+|++...+. ++.++||+||++||.|.++++..+...+++++.+++||.+. +.+.+
T Consensus 91 Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~--~~r~~ 160 (853)
T 2fsf_A 91 IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPA--PAKRE 160 (853)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCH--HHHHH
T ss_pred eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCH--HHHHH
Confidence 899999999999999999876543 56799999999999999999999999999999999999764 34445
Q ss_pred hcCCcEEEeChHHH-HHHHHccC------ccccceeEEeecchhhhh-hCC---------------CHHHHHHHHhhhh-
Q 012013 220 QKGVEIVIATPGRL-IDMLESHN------TNLRRVTYLVLDEADRML-DMG---------------FEPQIKKILSQVI- 275 (473)
Q Consensus 220 ~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~~~~~vVvDEah~l~-~~~---------------~~~~~~~i~~~~~- 275 (473)
..+++|+|+||++| .+++.... ..++.+.++|+||||+|+ +++ |...+..|+..+.
T Consensus 161 ~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 161 AYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--------------------
T ss_pred hcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchh
Confidence 56799999999999 78876542 456889999999999998 543 2223322222110
Q ss_pred -------------------------------------------------cCCCCcc------------------------
Q 012013 276 -------------------------------------------------IGSPDLK------------------------ 282 (473)
Q Consensus 276 -------------------------------------------------~~~~~~~------------------------ 282 (473)
+-+++..
T Consensus 241 ~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV 320 (853)
T 2fsf_A 241 QEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIV 320 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCcccee
Confidence 0000000
Q ss_pred ------------------------------------------ccccce--------------------------------
Q 012013 283 ------------------------------------------ANHAIR-------------------------------- 288 (473)
Q Consensus 283 ------------------------------------------~~~~i~-------------------------------- 288 (473)
....+.
T Consensus 321 ~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~ 400 (853)
T 2fsf_A 321 KDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLD 400 (853)
T ss_dssp ------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCE
T ss_pred ecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCc
Confidence 000000
Q ss_pred ---------------eeEEecCchhhHHHHHHHHHhHh-CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHH
Q 012013 289 ---------------QHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAER 352 (473)
Q Consensus 289 ---------------~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r 352 (473)
+.+.......|+..+.+.+.... .+.++||||+|++.++.|+..|.+.|+++.++||+..+.++
T Consensus 401 vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa 480 (853)
T 2fsf_A 401 TVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEA 480 (853)
T ss_dssp EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHH
T ss_pred EEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHH
Confidence 00123355678888888886653 46689999999999999999999999999999999988888
Q ss_pred HHHHHHHhcCCCcEEEEecccccCCCCCCC-------------------------------------CEEEEcCCCCCHH
Q 012013 353 DWVLSEFKAGKSPIMTATDVAARGLDVKDV-------------------------------------KYVINYDFPGSLE 395 (473)
Q Consensus 353 ~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v-------------------------------------~~Vi~~~~p~s~~ 395 (473)
..+.+.|+.| .|+|||++++||+||+.. .+||+++.|.|..
T Consensus 481 ~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~r 558 (853)
T 2fsf_A 481 AIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRR 558 (853)
T ss_dssp HHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHH
T ss_pred HHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHH
Confidence 8888889888 599999999999999974 5999999999999
Q ss_pred HHHHhhccccCCCCCcEEEEEeccccH
Q 012013 396 DYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 396 ~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
.|+||+||+||.|.+|.+++|++..|.
T Consensus 559 iy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 559 IDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHhhccccccCCCCeeEEEEecccHH
Confidence 999999999999999999999998764
No 33
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3.3e-41 Score=372.35 Aligned_cols=295 Identities=22% Similarity=0.292 Sum_probs=239.1
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 117 ~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
.+| +|+|+|.++++.++++++++++||||||||++|+++++..+.. ++++|||+||++||.|+.+.+.+++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~--------~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc--------CCeEEEEechHHHHHHHHHHHHHhh
Confidence 566 7999999999999999999999999999999888887776632 6789999999999999999999987
Q ss_pred cCCCceEEEEEcCccC---ccchHHhhcC-CcEEEeChHHHHHHHHccCccccceeEEeecchhh----------hhh-C
Q 012013 197 ASSKIKSTCIYGGVPK---GPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR----------MLD-M 261 (473)
Q Consensus 197 ~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~----------l~~-~ 261 (473)
..++++..++|+... ..+...+..+ ++|+|+||++|.+++.. ..+.++++|||||||+ +++ +
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 778899999999887 5556666665 99999999999888775 5567899999999975 445 8
Q ss_pred CCHHH-HHHHHhhh-----------------hcCCCCc-cc---------------------cccceeeEEecCchhhHH
Q 012013 262 GFEPQ-IKKILSQV-----------------IIGSPDL-KA---------------------NHAIRQHVDIVSESQKYN 301 (473)
Q Consensus 262 ~~~~~-~~~i~~~~-----------------~~~~~~~-~~---------------------~~~i~~~~~~~~~~~k~~ 301 (473)
+|.+. +..++..+ .+.++++ .. ..++.+.+.. ..+..
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~---~~k~~ 299 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRIS---SRSKE 299 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEES---CCCHH
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEe---cCHHH
Confidence 88888 77776532 2222221 10 0112222222 25677
Q ss_pred HHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeE-EecCCCCHHHHHHHHHHHhcCCCcEEEE----ecccccC
Q 012013 302 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL-SIHGDKSQAERDWVLSEFKAGKSPIMTA----TDVAARG 376 (473)
Q Consensus 302 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~-~ihg~~~~~~r~~~~~~f~~g~~~iLva----T~~~~~G 376 (473)
.|.+++... +.++||||+++..++.++..|...++.+. .+||. |.+ ++.|++|+.+|||| |+++++|
T Consensus 300 ~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarG 371 (1104)
T 4ddu_A 300 KLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRG 371 (1104)
T ss_dssp HHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCS
T ss_pred HHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEec
Confidence 778888773 47899999999999999999999999998 99992 555 99999999999999 9999999
Q ss_pred CCCCC-CCEEEEcCCCC---------------------------------------------------------------
Q 012013 377 LDVKD-VKYVINYDFPG--------------------------------------------------------------- 392 (473)
Q Consensus 377 idi~~-v~~Vi~~~~p~--------------------------------------------------------------- 392 (473)
||+|+ |++|||||+|.
T Consensus 372 IDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~ 451 (1104)
T 4ddu_A 372 VDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVK 451 (1104)
T ss_dssp CCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEE
T ss_pred CcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEec
Confidence 99999 99999999998
Q ss_pred ---------CHHHHHHhhccccCCCCCc--EEEEEeccccHHHHHHHHHHHHH
Q 012013 393 ---------SLEDYVHRIGRTGRAGAKG--TAYTFFTAANARFAKELITILEE 434 (473)
Q Consensus 393 ---------s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 434 (473)
++.+|+||+||+||.+..| .++.++..+|...++.|.+.+.-
T Consensus 452 ~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~ 504 (1104)
T 4ddu_A 452 DEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLL 504 (1104)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHH
T ss_pred CCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhh
Confidence 7889999999999966432 34445555888888888888873
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.9e-41 Score=374.43 Aligned_cols=291 Identities=21% Similarity=0.311 Sum_probs=233.6
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
..||. | |+|.++|+.++++++++++||||||||+ |.+|++..+... ++++|||+||++||.|+.+.++++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~-------~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK-------GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT-------SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc-------CCeEEEEeccHHHHHHHHHHHHHH
Confidence 47888 9 9999999999999999999999999998 888998887653 678999999999999999999999
Q ss_pred ccCCCc----eEEEEEcCccCccc---hHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHH
Q 012013 196 GASSKI----KSTCIYGGVPKGPQ---VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIK 268 (473)
Q Consensus 196 ~~~~~~----~~~~~~gg~~~~~~---~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~ 268 (473)
+...++ .+.+++|+.....+ ...+.. ++|+|+||++|.+++.+ +.++++|||||||+|++ +...++
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHH
Confidence 888888 88999999877553 344445 89999999999997765 66899999999999998 455666
Q ss_pred HHHhhhh-----------------cCCCCcccc-----------------------ccceeeEEecCchhhHHHHHHHHH
Q 012013 269 KILSQVI-----------------IGSPDLKAN-----------------------HAIRQHVDIVSESQKYNKLVKLLE 308 (473)
Q Consensus 269 ~i~~~~~-----------------~~~~~~~~~-----------------------~~i~~~~~~~~~~~k~~~l~~~l~ 308 (473)
.++..+- +-+++.... ..+.+.+. ...+...|.+++.
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ll~ 272 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLSSILE 272 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTHHHHT
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHHHHHh
Confidence 6654321 001111100 11111111 3455666677776
Q ss_pred hHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEE----ecccccCCCCCCC-C
Q 012013 309 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA----TDVAARGLDVKDV-K 383 (473)
Q Consensus 309 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLva----T~~~~~Gidi~~v-~ 383 (473)
.. +.++||||++++.|+.+++.|+.. +.+..+||++. .+++.|++|+.+|||| |+++++|||+|+| +
T Consensus 273 ~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~ 344 (1054)
T 1gku_B 273 KL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIR 344 (1054)
T ss_dssp TS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCC
T ss_pred hc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCccc
Confidence 54 468999999999999999999888 99999999984 6889999999999999 8999999999995 9
Q ss_pred EEEEcCCC-----------------------------------------------------------------------C
Q 012013 384 YVINYDFP-----------------------------------------------------------------------G 392 (473)
Q Consensus 384 ~Vi~~~~p-----------------------------------------------------------------------~ 392 (473)
+||++|.| .
T Consensus 345 ~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 424 (1054)
T 1gku_B 345 FAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFP 424 (1054)
T ss_dssp EEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEE
T ss_pred EEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecC
Confidence 99999999 7
Q ss_pred CHHHHHHhhccccCCCCCc--EEEEEeccccHHHHHHHHHHHHH
Q 012013 393 SLEDYVHRIGRTGRAGAKG--TAYTFFTAANARFAKELITILEE 434 (473)
Q Consensus 393 s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 434 (473)
+..+|+||+||+||.|..| .+++|+..++...+..|.+.+..
T Consensus 425 ~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 425 DLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp CHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 8999999999999987776 48888888888888888888874
No 35
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-40 Score=365.01 Aligned_cols=289 Identities=18% Similarity=0.230 Sum_probs=226.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 200 (473)
+|+|+|.++++.+++++++++++|||||||++|.++++..+.. +.++||++||++|+.|+++.+.++..
T Consensus 86 ~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHHhC---
Confidence 5999999999999999999999999999999999988877653 67899999999999999999998764
Q ss_pred ceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhh------
Q 012013 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV------ 274 (473)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~------ 274 (473)
.+..++|+... ...++|+|+||++|.+++.+....+.++++|||||||++.++.+...+..++..+
T Consensus 155 -~vglltGd~~~-------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~i 226 (1010)
T 2xgj_A 155 -DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 226 (1010)
T ss_dssp -CEEEECSSCEE-------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEE
T ss_pred -CEEEEeCCCcc-------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeE
Confidence 46667776654 2357999999999999988877778999999999999999998887777765431
Q ss_pred hcCCCCcccc------------------------ccceeeEEe---------cCchh-----------------------
Q 012013 275 IIGSPDLKAN------------------------HAIRQHVDI---------VSESQ----------------------- 298 (473)
Q Consensus 275 ~~~~~~~~~~------------------------~~i~~~~~~---------~~~~~----------------------- 298 (473)
...++++... ..+.+.+.. +....
T Consensus 227 l~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 306 (1010)
T 2xgj_A 227 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPN 306 (1010)
T ss_dssp EEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--------
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccc
Confidence 1111111100 001111110 00000
Q ss_pred ------------h--------HHHHHHHHHhHh--CCCeEEEEeCChHHHHHHHHHHHhCCCC-----------------
Q 012013 299 ------------K--------YNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWP----------------- 339 (473)
Q Consensus 299 ------------k--------~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~----------------- 339 (473)
| ...+..++..+. ...++||||+++..|+.++..|...++.
T Consensus 307 ~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 386 (1010)
T 2xgj_A 307 STDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIA 386 (1010)
T ss_dssp ----------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 0 112223333322 3348999999999999999999765442
Q ss_pred ----------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEE----cCC---
Q 012013 340 ----------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YDF--- 390 (473)
Q Consensus 340 ----------------------~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~----~~~--- 390 (473)
+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.
T Consensus 387 ~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~ 466 (1010)
T 2xgj_A 387 LLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQF 466 (1010)
T ss_dssp TSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCE
T ss_pred hcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCC
Confidence 678999999999999999999999999999999999999999999999 998
Q ss_pred -CCCHHHHHHhhccccCCCCC--cEEEEEeccc-cHHHHHHH
Q 012013 391 -PGSLEDYVHRIGRTGRAGAK--GTAYTFFTAA-NARFAKEL 428 (473)
Q Consensus 391 -p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~-~~~~~~~l 428 (473)
|.++.+|+||+|||||.|.+ |.|++++++. +...+..+
T Consensus 467 rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 467 RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred ccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 88999999999999999974 9999999875 44444433
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.6e-40 Score=349.81 Aligned_cols=313 Identities=18% Similarity=0.241 Sum_probs=228.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 012013 108 DYVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (473)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 181 (473)
+.+.+.+...+| +||++|.++++.++++ .++++++|||||||++|++|++..+.. +.+++|++||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 344455567888 9999999999998865 589999999999999999999988765 6789999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCccCccc---hHHhhc-CCcEEEeChHHHHHHHHccCccccceeEEeecchhh
Q 012013 182 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (473)
Q Consensus 182 ~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 257 (473)
++||.|+++.+.++....++++..++|+...... ...+.. .++|+|+||+.+.+ ...+.++++||+||+|+
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccch
Confidence 9999999999999988888999999998765443 233334 48999999987644 34578899999999998
Q ss_pred hhhCCCHHHHHHHH--hhhhcCCCCc---------------ccc----ccceeeEEecCchhhHHHHHHHHHhH-hCCCe
Q 012013 258 MLDMGFEPQIKKIL--SQVIIGSPDL---------------KAN----HAIRQHVDIVSESQKYNKLVKLLEDI-MDGSR 315 (473)
Q Consensus 258 l~~~~~~~~~~~i~--~~~~~~~~~~---------------~~~----~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~~ 315 (473)
+.... +..+.... ..+...+++. ... ..............+...+.+.+... ..+.+
T Consensus 502 ~g~~q-r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~q 580 (780)
T 1gm5_A 502 FGVKQ-REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQ 580 (780)
T ss_dssp C------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCC
T ss_pred hhHHH-HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCc
Confidence 63211 00000000 0001111110 000 00001111112233445555555543 45668
Q ss_pred EEEEeCChH--------HHHHHHHHHHh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCE
Q 012013 316 ILIFMDTKK--------GCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 384 (473)
Q Consensus 316 ~lVf~~~~~--------~~~~l~~~L~~---~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~ 384 (473)
++|||++.+ .++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++
T Consensus 581 vlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~ 660 (780)
T 1gm5_A 581 AFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANV 660 (780)
T ss_dssp BCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCE
T ss_pred EEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCE
Confidence 999999764 47788888887 4788999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCC-CHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhC
Q 012013 385 VINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG 436 (473)
Q Consensus 385 Vi~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 436 (473)
||+++.|. +.+.|.||+||+||.|++|.|++++++.+.. ..+.++.+++..
T Consensus 661 VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~-~~~rl~~l~~~~ 712 (780)
T 1gm5_A 661 MVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE-AMERLRFFTLNT 712 (780)
T ss_dssp EEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH-HHHHHHHHHTCC
T ss_pred EEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH-HHHHHHHHHhhh
Confidence 99999986 7899999999999999999999999854433 344455555543
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.2e-38 Score=349.10 Aligned_cols=279 Identities=18% Similarity=0.230 Sum_probs=218.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 200 (473)
+|+|+|.++++.+++++++++++|||||||++|++++...+.. ++++||++|+++|+.|+++.+.++.. +
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 6899999999999999999999999999999999988776543 67899999999999999999998753 4
Q ss_pred ceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhh------
Q 012013 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV------ 274 (473)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~------ 274 (473)
+.+..++|+... ...++|+|+||++|.+++......+.++++|||||||++.++++...+..++..+
T Consensus 109 ~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 678888887654 2447999999999999998877778999999999999999988877777665541
Q ss_pred hcCCCCccc------------------------cccceeeEE-------ec-----------------------------
Q 012013 275 IIGSPDLKA------------------------NHAIRQHVD-------IV----------------------------- 294 (473)
Q Consensus 275 ~~~~~~~~~------------------------~~~i~~~~~-------~~----------------------------- 294 (473)
...+++... ...+.+.+. ..
T Consensus 182 IlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (997)
T 4a4z_A 182 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSK 261 (997)
T ss_dssp EEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------
T ss_pred EEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccc
Confidence 111222110 000111110 00
Q ss_pred ---------------------------------------------------------CchhhHHHHHHHHHhHhCCCeEE
Q 012013 295 ---------------------------------------------------------SESQKYNKLVKLLEDIMDGSRIL 317 (473)
Q Consensus 295 ---------------------------------------------------------~~~~k~~~l~~~l~~~~~~~~~l 317 (473)
....+...+++.+... ...++|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~~~~I 340 (997)
T 4a4z_A 262 TDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-ELLPMV 340 (997)
T ss_dssp -------------------------------------------------------CCCCTTHHHHHHHHHHHT-TCCSEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CCCCEE
Confidence 0112234455555443 345899
Q ss_pred EEeCChHHHHHHHHHHHhCCC---------------------------------------CeEEecCCCCHHHHHHHHHH
Q 012013 318 IFMDTKKGCDQITRQLRMDGW---------------------------------------PALSIHGDKSQAERDWVLSE 358 (473)
Q Consensus 318 Vf~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~ihg~~~~~~r~~~~~~ 358 (473)
|||++++.|+.++..|...++ .+..+||+|++.+|..+++.
T Consensus 341 VF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~ 420 (997)
T 4a4z_A 341 VFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEIL 420 (997)
T ss_dssp EECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHH
Confidence 999999999999999977655 47899999999999999999
Q ss_pred HhcCCCcEEEEecccccCCCCCCCCEEEEcCCCC---------CHHHHHHhhccccCCCC--CcEEEEEec
Q 012013 359 FKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG---------SLEDYVHRIGRTGRAGA--KGTAYTFFT 418 (473)
Q Consensus 359 f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~---------s~~~~~Qr~GR~gR~g~--~g~~~~~~~ 418 (473)
|++|.++|||||+++++|||+|+ ..||+++.+. |+.+|+||+|||||.|. .|.|++++.
T Consensus 421 F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 421 FSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 99999999999999999999999 5556555544 99999999999999984 577777773
No 38
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=7.5e-40 Score=342.14 Aligned_cols=310 Identities=17% Similarity=0.132 Sum_probs=224.6
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 012013 104 VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (473)
Q Consensus 104 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~ 183 (473)
+++++.+.+++... ...++|+|+++++.++++++++++||||||||++|++|++..+... ++++||++||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-------~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-------RLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEcChHH
Confidence 44555555544432 4778999988999999999999999999999999999999888753 678999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCC
Q 012013 184 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (473)
Q Consensus 184 La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~ 263 (473)
||.|+.+.+..+ .+. ..... .. .....+..+.++|.+.|...+... ..+.++++|||||||++ +.+|
T Consensus 227 La~Qi~~~l~~~------~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~ 293 (618)
T 2whx_A 227 VAAEMEEALRGL------PIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCS 293 (618)
T ss_dssp HHHHHHHHTTTS------CEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHH
T ss_pred HHHHHHHHhcCC------cee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccH
Confidence 999999887632 222 11111 00 011234568888999888766654 34789999999999998 6666
Q ss_pred HHHHHHHHhh-------hhcCCCCccccc------c-ceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHH
Q 012013 264 EPQIKKILSQ-------VIIGSPDLKANH------A-IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI 329 (473)
Q Consensus 264 ~~~~~~i~~~-------~~~~~~~~~~~~------~-i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l 329 (473)
...+..+... +.+.++++.... + ....+.......+...++..+.+ ..+++||||++++.++.+
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~l~~--~~~~~LVF~~s~~~a~~l 371 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITD--YQGKTVWFVPSIKAGNDI 371 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCHHHHH--CCSCEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhccCCceeeecccCCHHHHHHHHHHHHh--CCCCEEEEECChhHHHHH
Confidence 6666665543 222233322110 0 00011111111222233444433 356899999999999999
Q ss_pred HHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEE--------------------EEcC
Q 012013 330 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV--------------------INYD 389 (473)
Q Consensus 330 ~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~V--------------------i~~~ 389 (473)
++.|+..++.+..+||+ +|.++++.|++|+.+|||||+++++|||+| +++| |+++
T Consensus 372 ~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d 446 (618)
T 2whx_A 372 ANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGP 446 (618)
T ss_dssp HHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEE
T ss_pred HHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEccc
Confidence 99999999999999985 678899999999999999999999999997 8888 7778
Q ss_pred CCCCHHHHHHhhccccCCCC-CcEEEEEec---cccHHHHHHHHHHHHHhCCCCCH
Q 012013 390 FPGSLEDYVHRIGRTGRAGA-KGTAYTFFT---AANARFAKELITILEEAGQKVSP 441 (473)
Q Consensus 390 ~p~s~~~~~Qr~GR~gR~g~-~g~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~ 441 (473)
.|.+.++|+||+||+||.|. +|.|++|++ +.+...+..+...+.-....+|.
T Consensus 447 ~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 447 IPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp EECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred ccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 89999999999999999965 899999998 77777777777776665555543
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.6e-38 Score=362.53 Aligned_cols=313 Identities=18% Similarity=0.226 Sum_probs=238.3
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 012013 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (473)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~-~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~L 184 (473)
+.+...+++...+|..++|+|.++++.++. +++++++||||||||++|.+|++..+...+ +.++||++|+++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~------~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS------EGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT------TCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC------CCEEEEEcChHHH
Confidence 456677788888899999999999999975 568999999999999999999999987643 5679999999999
Q ss_pred HHHHHHHHHH-hccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc--CccccceeEEeecchhhhhhC
Q 012013 185 AVQIQQESTK-FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDM 261 (473)
Q Consensus 185 a~q~~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--~~~l~~~~~vVvDEah~l~~~ 261 (473)
|.|.++.+.+ |+...++++..++|+.... .+ ....++|+||||++|..++.+. ...+.++++||+||+|.+.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~--~~-~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTD--LK-LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHH--HH-HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcc--hh-hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 9999998865 6777889998888876432 22 2345799999999987776653 334788999999999998874
Q ss_pred CCHHHHHHHHhhh-------------hcCCCCcccc-----------------------ccceeeEEecCchh-------
Q 012013 262 GFEPQIKKILSQV-------------IIGSPDLKAN-----------------------HAIRQHVDIVSESQ------- 298 (473)
Q Consensus 262 ~~~~~~~~i~~~~-------------~~~~~~~~~~-----------------------~~i~~~~~~~~~~~------- 298 (473)
....+..++..+ ..-++++... ..+...+.......
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~ 1140 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLS 1140 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHT
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhh
Confidence 566555554321 1112221110 01112222211111
Q ss_pred hHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhC----------------------------------CCCeEEec
Q 012013 299 KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD----------------------------------GWPALSIH 344 (473)
Q Consensus 299 k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------------------------------~~~~~~ih 344 (473)
....+...+......+++||||++++.|+.++..|... ...+..+|
T Consensus 1141 ~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hH 1220 (1724)
T 4f92_B 1141 MAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLH 1220 (1724)
T ss_dssp THHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEEC
T ss_pred hcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEEC
Confidence 12334455666677789999999999999888766320 23478999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEE----cC------CCCCHHHHHHhhccccCCCC--CcE
Q 012013 345 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD------FPGSLEDYVHRIGRTGRAGA--KGT 412 (473)
Q Consensus 345 g~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~----~~------~p~s~~~~~Qr~GR~gR~g~--~g~ 412 (473)
++|++.+|..+++.|++|.++|||||+++++|||+|+..+||. || .|.++.+|.||+|||||.|. .|.
T Consensus 1221 agL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~ 1300 (1724)
T 4f92_B 1221 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGR 1300 (1724)
T ss_dssp TTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceE
Confidence 9999999999999999999999999999999999999998883 32 35689999999999999987 599
Q ss_pred EEEEeccccHHHHHHH
Q 012013 413 AYTFFTAANARFAKEL 428 (473)
Q Consensus 413 ~~~~~~~~~~~~~~~l 428 (473)
|+++..+.+....+.+
T Consensus 1301 avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1301 CVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEEEEGGGHHHHHHH
T ss_pred EEEEecchHHHHHHHH
Confidence 9999988877666554
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.5e-37 Score=345.29 Aligned_cols=300 Identities=20% Similarity=0.220 Sum_probs=229.6
Q ss_pred CCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhc----CC--cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEE
Q 012013 104 VGFPDYVMQEISK-AGFFEPTPIQAQGWPMALK----GR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (473)
Q Consensus 104 ~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~i~~----~~--~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 176 (473)
++++..+.+.+.. .+| +|||+|.++++.++. ++ ++++++|||+|||++|+++++..+.. +++++
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--------g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEE
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCeEE
Confidence 3456677777654 455 589999999999886 55 89999999999999999888776553 67899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccc---hHHhhc-CCcEEEeChHHHHHHHHccCccccceeEEee
Q 012013 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (473)
Q Consensus 177 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVv 252 (473)
|++||++||.|+++.+.++....++++..+++....... ...+.. .++|+|+||+.|. ....+.++++|||
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 731 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEE
Confidence 999999999999999998877777888887765544332 233334 4899999997653 2345789999999
Q ss_pred cchhhhhhCCCHHHHHHHHhh--hhcCCCCccc----------------------cccceeeEEecCchhhHHHHHHHHH
Q 012013 253 DEADRMLDMGFEPQIKKILSQ--VIIGSPDLKA----------------------NHAIRQHVDIVSESQKYNKLVKLLE 308 (473)
Q Consensus 253 DEah~l~~~~~~~~~~~i~~~--~~~~~~~~~~----------------------~~~i~~~~~~~~~~~k~~~l~~~l~ 308 (473)
||+|++... ....++.+... +...+++... ...+...+ ....+......++.
T Consensus 732 DEaH~~g~~-~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~---~~~~~~~i~~~il~ 807 (1151)
T 2eyq_A 732 DEEHRFGVR-HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV---REYDSMVVREAILR 807 (1151)
T ss_dssp ESGGGSCHH-HHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEE---EECCHHHHHHHHHH
T ss_pred echHhcChH-HHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEE---ecCCHHHHHHHHHH
Confidence 999995321 12223333221 1111121100 00111111 12223344455566
Q ss_pred hHhCCCeEEEEeCChHHHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEE
Q 012013 309 DIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 386 (473)
Q Consensus 309 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi 386 (473)
....+++++|||++++.++.+++.|++. ++.+..+||+|++.+|+.++++|++|+.+|||||+++++|||+|++++||
T Consensus 808 ~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VI 887 (1151)
T 2eyq_A 808 EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 887 (1151)
T ss_dssp HHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEE
T ss_pred HHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEE
Confidence 6667789999999999999999999876 78899999999999999999999999999999999999999999999999
Q ss_pred EcCC-CCCHHHHHHhhccccCCCCCcEEEEEecccc
Q 012013 387 NYDF-PGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 421 (473)
Q Consensus 387 ~~~~-p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 421 (473)
+++. ++++.+|.||+||+||.|+.|.|++++.+.+
T Consensus 888 i~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 888 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp ETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred EeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9988 5789999999999999999999999987653
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.2e-38 Score=329.53 Aligned_cols=281 Identities=19% Similarity=0.190 Sum_probs=216.7
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 199 (473)
.+|+|+|.++++.+++++++++++|||+|||++|++++...+... ..++|||+||++|+.||.+++.++....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 489999999999999999999999999999999998888776542 3489999999999999999999997666
Q ss_pred CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhh-----
Q 012013 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV----- 274 (473)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~----- 274 (473)
.+.+..++++.....+ +...++|+|+||+.|... ....+.++++|||||||++.. +.+..++..+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 6788888887765443 346689999999976542 334577899999999999876 3455554431
Q ss_pred -hcCCCCccccc-----------------cce--------------eeEE---------------------ecCchhhHH
Q 012013 275 -IIGSPDLKANH-----------------AIR--------------QHVD---------------------IVSESQKYN 301 (473)
Q Consensus 275 -~~~~~~~~~~~-----------------~i~--------------~~~~---------------------~~~~~~k~~ 301 (473)
..-++++.... ... .... ......+..
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 11112211100 000 0000 000112333
Q ss_pred HHHHHHHhHhC--CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-cccccCCC
Q 012013 302 KLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLD 378 (473)
Q Consensus 302 ~l~~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT-~~~~~Gid 378 (473)
.+.+++..... ..++||||+ .++++.+++.|...+..+..+||+++..+|+.+++.|++|+.+||||| +++++|+|
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 45555555432 335667666 899999999999988899999999999999999999999999999999 99999999
Q ss_pred CCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEec
Q 012013 379 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 418 (473)
Q Consensus 379 i~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 418 (473)
+|++++||++++|+++..|+|++||+||.|+.+.++++++
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999998875555555
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=6.3e-39 Score=328.50 Aligned_cols=264 Identities=19% Similarity=0.241 Sum_probs=206.0
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 199 (473)
.+|+|+|.++++.++.++++++++|||+|||++|++++... +.++|||||+++|+.||.+++.+|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 47999999999999999999999999999999998887654 456999999999999999999995
Q ss_pred Cce-EEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhh-hhcC
Q 012013 200 KIK-STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ-VIIG 277 (473)
Q Consensus 200 ~~~-~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~-~~~~ 277 (473)
++. +..++|+... ..+|+|+||+.+...+... ..++++|||||||++.+..|...+..+... +...
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~l~l 224 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGL 224 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHHHHHTCCCSEEEEE
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHHHHHhcCCCeEEEE
Confidence 466 6666665432 4689999999988766431 245899999999999988877644332111 1111
Q ss_pred CCCcccc--------------------cc-----ce----eeEEe-----------------------------------
Q 012013 278 SPDLKAN--------------------HA-----IR----QHVDI----------------------------------- 293 (473)
Q Consensus 278 ~~~~~~~--------------------~~-----i~----~~~~~----------------------------------- 293 (473)
++++... .. +. ..+..
T Consensus 225 SATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (472)
T 2fwr_A 225 TATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFN 304 (472)
T ss_dssp ESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSST
T ss_pred ecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHH
Confidence 1111100 00 00 00000
Q ss_pred --------------------------cCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCC
Q 012013 294 --------------------------VSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 347 (473)
Q Consensus 294 --------------------------~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~ 347 (473)
+....|...+.+++.. ..+.++||||++++.++.+++.|. +..+||++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~ 378 (472)
T 2fwr_A 305 KIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRT 378 (472)
T ss_dssp TTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSS
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCC
Confidence 1123456677777777 456799999999999999999884 66899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCC-cEEEEE
Q 012013 348 SQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK-GTAYTF 416 (473)
Q Consensus 348 ~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~-g~~~~~ 416 (473)
+..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|+||+||+||.|+. +.++++
T Consensus 379 ~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 379 SREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp CSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999865 455544
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=8.6e-39 Score=324.43 Aligned_cols=298 Identities=18% Similarity=0.147 Sum_probs=208.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCcE-EEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 118 GFFEPTPIQAQGWPMALKGRDL-IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 118 ~~~~~~~~Q~~~i~~i~~~~~~-l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
|+.+|+|+|+ +++.+++++++ ++++|||||||++|++|++..+... ++++||++||++||.|+.+.+..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g~- 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-------RLRTLILAPTRVVAAEMEEALRGL- 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-------CCcEEEECCCHHHHHHHHHHhcCc-
Confidence 5678999985 79999998887 8889999999999999999877653 678999999999999999987532
Q ss_pred cCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhh---
Q 012013 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ--- 273 (473)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~--- 273 (473)
.+.. ....... ....+..|.++|++.|.+.+... ..+.++++|||||||++ +..+...+..+...
T Consensus 72 -----~v~~--~~~~~~~---~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 72 -----PIRY--QTPAVKS---DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp -----CEEE--CCTTCSC---CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred -----eeee--eeccccc---cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 2211 1111100 11234579999999998887654 45789999999999976 33323222222211
Q ss_pred ----hhcCCCCccccc--cc---eeeEEec--CchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEE
Q 012013 274 ----VIIGSPDLKANH--AI---RQHVDIV--SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 342 (473)
Q Consensus 274 ----~~~~~~~~~~~~--~i---~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ 342 (473)
+...++++.... .. ...+... .....+..+.+.+.+ ..+++||||++++.++.+++.|+..++.+..
T Consensus 140 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~ 217 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQ 217 (451)
T ss_dssp TSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCHHHHH--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEE
T ss_pred CCceEEEEccCCCccchhhhcCCCceEecCccCCchhhHHHHHHHHh--CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEE
Confidence 222333322110 00 0001110 001111122333333 3568999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEEcC--------------------CCCCHHHHHHhhc
Q 012013 343 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD--------------------FPGSLEDYVHRIG 402 (473)
Q Consensus 343 ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~~~--------------------~p~s~~~~~Qr~G 402 (473)
+|+++. ..+++.|++|+.+|||||+++++|||+|+ ++||++| .|.+.++|+||+|
T Consensus 218 lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~G 292 (451)
T 2jlq_A 218 LSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRG 292 (451)
T ss_dssp ECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHT
T ss_pred CCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhcc
Confidence 999764 56899999999999999999999999999 9999999 9999999999999
Q ss_pred cccCCCC-CcEEEEEeccccH---HHHHHHHHHHHHhCCCCCHHH
Q 012013 403 RTGRAGA-KGTAYTFFTAANA---RFAKELITILEEAGQKVSPEL 443 (473)
Q Consensus 403 R~gR~g~-~g~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~l 443 (473)
|+||.|. +|.|++|+...+. .+...+...+...+.++|..+
T Consensus 293 RaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 293 RIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp TSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred ccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 9999998 7899888754321 222222333444555666444
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.8e-37 Score=352.29 Aligned_cols=307 Identities=20% Similarity=0.259 Sum_probs=229.0
Q ss_pred CCCCCCHHHHHHHHHHh-cCCcEEEEccCCCChhHHhHHHHHHHHhcCCC---CCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 012013 118 GFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF---LAPGDGPIVLVLAPTRELAVQIQQEST 193 (473)
Q Consensus 118 ~~~~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~---~~~~~~~~vlil~Pt~~La~q~~~~~~ 193 (473)
+|.+|+++|.++++.++ +++|++++||||||||++|.++++..+..... .....+.++||++|+++||.|+.+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 68899999999999877 57899999999999999999999999875322 122347899999999999999999999
Q ss_pred HhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccC--ccccceeEEeecchhhhhhCCCHHHHHHHH
Q 012013 194 KFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271 (473)
Q Consensus 194 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~l~~~~~vVvDEah~l~~~~~~~~~~~i~ 271 (473)
+.....++++..++|+....... ...++|+||||+++..++.+.. ..++++++|||||+|.+.+ .....++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 88788899999999987654322 3468999999999865554432 2468899999999998876 4555555544
Q ss_pred hh-------------hhcCCCCccccc------------------------cceeeEEecCch---hhHHH----HHHHH
Q 012013 272 SQ-------------VIIGSPDLKANH------------------------AIRQHVDIVSES---QKYNK----LVKLL 307 (473)
Q Consensus 272 ~~-------------~~~~~~~~~~~~------------------------~i~~~~~~~~~~---~k~~~----l~~~l 307 (473)
.. +..-++++.... .+.+.+...... .+... +.+.+
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v 311 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKI 311 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHH
Confidence 32 111122221111 111221111111 12222 22333
Q ss_pred HhHhCCCeEEEEeCChHHHHHHHHHHHhC-------------------------------------CCCeEEecCCCCHH
Q 012013 308 EDIMDGSRILIFMDTKKGCDQITRQLRMD-------------------------------------GWPALSIHGDKSQA 350 (473)
Q Consensus 308 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~ihg~~~~~ 350 (473)
.+....+++||||++++.|+.+++.|.+. ...+.++||+|++.
T Consensus 312 ~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~ 391 (1724)
T 4f92_B 312 MEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRV 391 (1724)
T ss_dssp TTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTH
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHH
Confidence 34445568999999999999888887431 23477899999999
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEE----cCC------CCCHHHHHHhhccccCCCC--CcEEEEEec
Q 012013 351 ERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YDF------PGSLEDYVHRIGRTGRAGA--KGTAYTFFT 418 (473)
Q Consensus 351 ~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~----~~~------p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~ 418 (473)
+|..+++.|++|.++|||||+++++|||+|++++||. |++ |.++.+|.||+|||||.|. .|.++++..
T Consensus 392 ~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~ 471 (1724)
T 4f92_B 392 DRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITS 471 (1724)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEec
Confidence 9999999999999999999999999999999999984 443 4589999999999999875 499999888
Q ss_pred cccHHHHHHH
Q 012013 419 AANARFAKEL 428 (473)
Q Consensus 419 ~~~~~~~~~l 428 (473)
.++......+
T Consensus 472 ~~~~~~~~~l 481 (1724)
T 4f92_B 472 HGELQYYLSL 481 (1724)
T ss_dssp STTCCHHHHH
T ss_pred chhHHHHHHH
Confidence 8765444443
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.1e-38 Score=320.11 Aligned_cols=284 Identities=19% Similarity=0.187 Sum_probs=186.5
Q ss_pred HHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCcc
Q 012013 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP 211 (473)
Q Consensus 132 ~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~ 211 (473)
++++++++++++|||||||++|++|++..+... ++++||++||++||.|+++.+..+. +.. ..+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~~------v~~-~~~~~ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGLD------VKF-HTQAF 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTSC------EEE-ESSCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcCC------eEE-ecccc
Confidence 467899999999999999999999999877653 5789999999999999999887542 211 11110
Q ss_pred CccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh-----hhCCCHHHHHHH-HhhhhcCCCCcccc-
Q 012013 212 KGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM-----LDMGFEPQIKKI-LSQVIIGSPDLKAN- 284 (473)
Q Consensus 212 ~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l-----~~~~~~~~~~~i-~~~~~~~~~~~~~~- 284 (473)
. . ....+.-+-+.+.+.+...+.. ...+.++++||+||+|++ ...++...+... -.++.+.++++...
T Consensus 70 ~--~--v~Tp~~l~~~l~~~~l~~~~~~-~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~ 144 (440)
T 1yks_A 70 S--A--HGSGREVIDAMCHATLTYRMLE-PTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGTS 144 (440)
T ss_dssp C--C--CCCSSCCEEEEEHHHHHHHHTS-SSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCC
T ss_pred e--e--ccCCccceeeecccchhHhhhC-cccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCchh
Confidence 0 0 0001111222333333333332 244788999999999998 222222222110 01122223332111
Q ss_pred ------ccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHH
Q 012013 285 ------HAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSE 358 (473)
Q Consensus 285 ------~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~ 358 (473)
......+...........++..+.+ .++++||||++++.++.+++.|+..++.+..+|| .+|..+++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~ 218 (440)
T 1yks_A 145 DEFPHSNGEIEDVQTDIPSEPWNTGHDWILA--DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPT 218 (440)
T ss_dssp CSSCCCSSCEEEEECCCCSSCCSSSCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC-----
T ss_pred hhhhhcCCCeeEeeeccChHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhh
Confidence 0000111111111111222233333 3569999999999999999999999999999999 368889999
Q ss_pred HhcCCCcEEEEecccccCCCCCCCCEEEE-------------------cCCCCCHHHHHHhhccccCC-CCCcEEEEEe-
Q 012013 359 FKAGKSPIMTATDVAARGLDVKDVKYVIN-------------------YDFPGSLEDYVHRIGRTGRA-GAKGTAYTFF- 417 (473)
Q Consensus 359 f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~-------------------~~~p~s~~~~~Qr~GR~gR~-g~~g~~~~~~- 417 (473)
|++|+.+|||||+++++|||+| +++||+ ++.|.+.++|+||+||+||. +.+|.|++|+
T Consensus 219 F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 219 IKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp ---CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred hcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 9999999999999999999999 999986 88899999999999999998 6899999997
Q ss_pred --ccccHHHHHHHHHHHHHhCCCCCH
Q 012013 418 --TAANARFAKELITILEEAGQKVSP 441 (473)
Q Consensus 418 --~~~~~~~~~~l~~~l~~~~~~~~~ 441 (473)
++.+...+..+...+.-...++|.
T Consensus 298 ~~~~~~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 298 PTSENNAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp CCCCCCTTBHHHHHHHHHHTTSCCGG
T ss_pred cCChhhhhhhhhhhHHhccccccccc
Confidence 567777777777766665555543
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=6.8e-38 Score=329.36 Aligned_cols=285 Identities=18% Similarity=0.195 Sum_probs=200.8
Q ss_pred CCCHHHH-----HHHHHHh------cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHH
Q 012013 121 EPTPIQA-----QGWPMAL------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (473)
Q Consensus 121 ~~~~~Q~-----~~i~~i~------~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~ 189 (473)
.|+|+|+ ++|+.++ +++++++++|||||||++|++|++..+... ++++||++||++||.|++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-------~~~~lilaPTr~La~Q~~ 287 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-------RLRTAVLAPTRVVAAEMA 287 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEccHHHHHHHHH
Confidence 8999999 9999888 899999999999999999999999887653 678999999999999999
Q ss_pred HHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh-----hhCCCH
Q 012013 190 QESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM-----LDMGFE 264 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l-----~~~~~~ 264 (473)
+.+..+. +. . ..+... .....+.-+-+.+.+.+.+.+... ..+.++++|||||||++ ...++
T Consensus 288 ~~l~~~~----i~--~-~~~~l~----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~~~~~~~~~~~- 354 (673)
T 2wv9_A 288 EALRGLP----VR--Y-LTPAVQ----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFTDPASIAARGY- 354 (673)
T ss_dssp HHTTTSC----CE--E-CCC-------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCCCHHHHHHHHH-
T ss_pred HHHhcCC----ee--e-eccccc----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcccCccHHHHHHH-
Confidence 9887652 11 0 000000 000112245556666666555543 45789999999999998 22222
Q ss_pred HHHHHHHh----hhhcCCCCcccc-------ccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHH
Q 012013 265 PQIKKILS----QVIIGSPDLKAN-------HAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 333 (473)
Q Consensus 265 ~~~~~i~~----~~~~~~~~~~~~-------~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L 333 (473)
+..+.. ++.+.++++... ......+.......+...++..+.+ ..+++||||++++.++.+++.|
T Consensus 355 --l~~~~~~~~~~vl~~SAT~~~~i~~~~~~~~~i~~v~~~~~~~~~~~~l~~l~~--~~~~~lVF~~s~~~~e~la~~L 430 (673)
T 2wv9_A 355 --IATRVEAGEAAAIFMTATPPGTSDPFPDTNSPVHDVSSEIPDRAWSSGFEWITD--YAGKTVWFVASVKMSNEIAQCL 430 (673)
T ss_dssp --HHHHHHTTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSCCHHHHS--CCSCEEEECSSHHHHHHHHHHH
T ss_pred --HHHhccccCCcEEEEcCCCChhhhhhcccCCceEEEeeecCHHHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHH
Confidence 222221 122223332111 0000111110111112222333333 4679999999999999999999
Q ss_pred HhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEE--------------------cCCCCC
Q 012013 334 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN--------------------YDFPGS 393 (473)
Q Consensus 334 ~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~--------------------~~~p~s 393 (473)
+..++.+..+||. +|..+++.|++|+.+|||||+++++|||+| +++||+ |+.|.+
T Consensus 431 ~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s 505 (673)
T 2wv9_A 431 QRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAIT 505 (673)
T ss_dssp HTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECC
T ss_pred HhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCC
Confidence 9999999999994 788999999999999999999999999999 999998 678999
Q ss_pred HHHHHHhhccccCC-CCCcEEEEEe---ccccHHHHHHHHHHHHH
Q 012013 394 LEDYVHRIGRTGRA-GAKGTAYTFF---TAANARFAKELITILEE 434 (473)
Q Consensus 394 ~~~~~Qr~GR~gR~-g~~g~~~~~~---~~~~~~~~~~l~~~l~~ 434 (473)
.++|+||+||+||. +++|.|++|+ ++.+...+..+...+.-
T Consensus 506 ~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l 550 (673)
T 2wv9_A 506 SASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILL 550 (673)
T ss_dssp HHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhh
Confidence 99999999999999 7899999996 46666555555554433
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.9e-37 Score=328.63 Aligned_cols=313 Identities=18% Similarity=0.258 Sum_probs=225.0
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCE
Q 012013 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~-~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 174 (473)
.++.+|+++++++.+.+.+...+ ..|++.|+++|+.++. +++++++||||||||+ ++|++...... ..+.+++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~~ 142 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENTQ 142 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTCE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCce
Confidence 45678999999999999999887 7899999999988775 5679999999999998 56655332211 1112567
Q ss_pred EEEEcCcHHHHHHHHHHHHHhc-cCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeec
Q 012013 175 VLVLAPTRELAVQIQQESTKFG-ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (473)
Q Consensus 175 vlil~Pt~~La~q~~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvD 253 (473)
++|++|+++||.|+.+.+.+.. ...+..+. ....... ......+|+|+||+++.+.+... ..+.++++||||
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG----~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVG----YSIRFEN--KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEE----EEETTEE--ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheec----ceecccc--ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 9999999999999998776543 22222221 1111011 11246789999999999887764 358899999999
Q ss_pred chhh-hhhCCC-HHHHHHHHhh-----hhcCCCCcccc------------------ccceeeEEecCchhhHHHHHHHHH
Q 012013 254 EADR-MLDMGF-EPQIKKILSQ-----VIIGSPDLKAN------------------HAIRQHVDIVSESQKYNKLVKLLE 308 (473)
Q Consensus 254 Eah~-l~~~~~-~~~~~~i~~~-----~~~~~~~~~~~------------------~~i~~~~~~~~~~~k~~~l~~~l~ 308 (473)
|+|. .++..+ ...++.+... +.+.++++... ..+...+.......+...++..+.
T Consensus 216 Eah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~ 295 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVL 295 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHH
T ss_pred CccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHH
Confidence 9995 555221 2223333221 11222221100 011111111222333333333322
Q ss_pred hH---hCCCeEEEEeCChHHHHHHHHHHHh-----------CCCCeEEecCCCCHHHHHHHHHHHh-----cCCCcEEEE
Q 012013 309 DI---MDGSRILIFMDTKKGCDQITRQLRM-----------DGWPALSIHGDKSQAERDWVLSEFK-----AGKSPIMTA 369 (473)
Q Consensus 309 ~~---~~~~~~lVf~~~~~~~~~l~~~L~~-----------~~~~~~~ihg~~~~~~r~~~~~~f~-----~g~~~iLva 369 (473)
.. ...+++||||+++++++.+++.|.. .++.+..+||++++.+|..+++.|+ +|..+||||
T Consensus 296 ~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVA 375 (773)
T 2xau_A 296 QIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIS 375 (773)
T ss_dssp HHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEE
T ss_pred HHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEe
Confidence 22 2467999999999999999999975 5778999999999999999999999 999999999
Q ss_pred ecccccCCCCCCCCEEEEcCC------------------CCCHHHHHHhhccccCCCCCcEEEEEeccccH
Q 012013 370 TDVAARGLDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 422 (473)
Q Consensus 370 T~~~~~Gidi~~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 422 (473)
|+++++|||||++++||++++ |.|.++|+||+|||||. .+|.|+.|+++.+.
T Consensus 376 T~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 376 TNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp CTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999999999887 88999999999999999 89999999987644
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=8.1e-38 Score=324.04 Aligned_cols=268 Identities=22% Similarity=0.242 Sum_probs=197.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 199 (473)
..++++|.++++.+..+++++++||||||||++|.+|++.. +.++||++|||+||.|+.+.+.+..
T Consensus 216 lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~--- 281 (666)
T 3o8b_A 216 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAH--- 281 (666)
T ss_dssp SCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHH---
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHh---
Confidence 34566777777777788999999999999999999887752 5579999999999999999887654
Q ss_pred CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhhhcC--
Q 012013 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVIIG-- 277 (473)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~~~~-- 277 (473)
+..+...+|+.. ...+++|+|+||++| +......+.++++|||||||. ++++|...+..++..+...
T Consensus 282 g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 282 GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGA 350 (666)
T ss_dssp SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTC
T ss_pred CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCC
Confidence 233445555543 245689999999997 455566788899999999964 5667777777776543211
Q ss_pred ------CCCcccccc----ceeeEEecC-ch-hhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecC
Q 012013 278 ------SPDLKANHA----IRQHVDIVS-ES-QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG 345 (473)
Q Consensus 278 ------~~~~~~~~~----i~~~~~~~~-~~-~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg 345 (473)
+++...... ....+.... .. ........ + .....+++||||++++.++.+++.|++.++.+..+||
T Consensus 351 ~llil~SAT~~~~i~~~~p~i~~v~~~~~~~i~~~~~~~~-l-~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG 428 (666)
T 3o8b_A 351 RLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIP-I-EAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYR 428 (666)
T ss_dssp SEEEEEESSCTTCCCCCCTTEEEEECBSCSSEEETTEEEC-G-GGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECT
T ss_pred ceEEEECCCCCcccccCCcceEEEeecccchhHHHHhhhh-h-hhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecC
Confidence 222111100 000010000 00 00000000 1 1225679999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEE----------EcC-----------CCCCHHHHHHhhccc
Q 012013 346 DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----------NYD-----------FPGSLEDYVHRIGRT 404 (473)
Q Consensus 346 ~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi----------~~~-----------~p~s~~~~~Qr~GR~ 404 (473)
++++.+ |.++..+|||||+++++|||+| +++|| ||| .|.+.++|+||+||+
T Consensus 429 ~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRt 500 (666)
T 3o8b_A 429 GLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRT 500 (666)
T ss_dssp TSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTB
T ss_pred CCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccC
Confidence 999864 5567779999999999999997 99988 677 899999999999999
Q ss_pred cCCCCCcEEEEEeccccHHH
Q 012013 405 GRAGAKGTAYTFFTAANARF 424 (473)
Q Consensus 405 gR~g~~g~~~~~~~~~~~~~ 424 (473)
|| |++|. +.|+++.+...
T Consensus 501 GR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 501 GR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp CS-SSCEE-EEESCCCCBCS
T ss_pred CC-CCCCE-EEEEecchhhc
Confidence 99 89999 99998875433
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4e-37 Score=312.70 Aligned_cols=268 Identities=19% Similarity=0.190 Sum_probs=189.1
Q ss_pred HHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE
Q 012013 127 AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCI 206 (473)
Q Consensus 127 ~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~ 206 (473)
.+....+.+++++++++|||||||++|++|++..+... ++++||++||++||.|+.+.+..+ .+...
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~ 78 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-------RLRTAVLAPTRVVAAEMAEALRGL------PVRYQ 78 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEECSHHHHHHHHHHTTTS------CEEEC
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEECchHHHHHHHHHHhcCc------eEeEE
Confidence 33344567789999999999999999999999887653 678999999999999999988632 22111
Q ss_pred EcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhh-----hhhCCCHHHHHHHH-hhhhcCCCC
Q 012013 207 YGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-----MLDMGFEPQIKKIL-SQVIIGSPD 280 (473)
Q Consensus 207 ~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~-----l~~~~~~~~~~~i~-~~~~~~~~~ 280 (473)
.+.... .-..+..+.++|.+.+...+... ..+.++++|||||||+ ++..+|...+.... .++...+++
T Consensus 79 ~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT 152 (459)
T 2z83_A 79 TSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTAT 152 (459)
T ss_dssp C-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSS
T ss_pred eccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcC
Confidence 111000 01233467888999888776654 4578999999999998 56555544433211 122233333
Q ss_pred ccccc-------cceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHH
Q 012013 281 LKANH-------AIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERD 353 (473)
Q Consensus 281 ~~~~~-------~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~ 353 (473)
+.... .....+.......+...+.+++.+ ..+++||||++++.++.+++.|+..++.+..+|++ +|.
T Consensus 153 ~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~ 226 (459)
T 2z83_A 153 PPGTTDPFPDSNAPIHDLQDEIPDRAWSSGYEWITE--YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYD 226 (459)
T ss_dssp CTTCCCSSCCCSSCEEEEECCCCSSCCSSCCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCC
T ss_pred CCcchhhhccCCCCeEEecccCCcchhHHHHHHHHh--cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHH
Confidence 22110 000001101111112222333433 25689999999999999999999999999999995 677
Q ss_pred HHHHHHhcCCCcEEEEecccccCCCCCCCCEEEE--------------------cCCCCCHHHHHHhhccccCCCC-CcE
Q 012013 354 WVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN--------------------YDFPGSLEDYVHRIGRTGRAGA-KGT 412 (473)
Q Consensus 354 ~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~Vi~--------------------~~~p~s~~~~~Qr~GR~gR~g~-~g~ 412 (473)
.+++.|++|+.+|||||+++++|||+|+ ++||+ |+.|.|.++|+||+||+||.|. +|.
T Consensus 227 ~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~ 305 (459)
T 2z83_A 227 TEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGD 305 (459)
T ss_dssp CCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCE
T ss_pred HHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCe
Confidence 8999999999999999999999999999 99999 7799999999999999999997 899
Q ss_pred EEEEeccc
Q 012013 413 AYTFFTAA 420 (473)
Q Consensus 413 ~~~~~~~~ 420 (473)
|++|++..
T Consensus 306 ~~~~~~~~ 313 (459)
T 2z83_A 306 EYHYGGAT 313 (459)
T ss_dssp EEEECSCC
T ss_pred EEEEEccc
Confidence 99999885
No 50
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4.2e-35 Score=273.13 Aligned_cols=202 Identities=66% Similarity=1.113 Sum_probs=185.5
Q ss_pred CCHHHHHHHHHhccceeccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHH
Q 012013 73 MSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 73 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~ 152 (473)
+++++++.+++...+.+.+.+.|.|+.+|+++++++.+++.+.+.+|.+|+|+|.++++.+++++++++++|||+|||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHH
Q 012013 153 YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232 (473)
Q Consensus 153 ~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~ 232 (473)
|++|++..+...+......++++||++||++|+.|+.+.++++....++.+..++|+.....+...+..+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 99999999887655455568899999999999999999999998888899999999998887888888889999999999
Q ss_pred HHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhh
Q 012013 233 LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274 (473)
Q Consensus 233 l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~ 274 (473)
|.+++......+.++++||+||||++.+++|.+.+..++..+
T Consensus 163 l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~ 204 (242)
T 3fe2_A 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 204 (242)
T ss_dssp HHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhC
Confidence 999998888888999999999999999999999999987653
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.7e-35 Score=322.15 Aligned_cols=306 Identities=15% Similarity=0.136 Sum_probs=218.9
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 012013 120 FEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~ 197 (473)
.+|+|+|.+++..++.. .+++++++||+|||++++..+...+... ...++|||||+ .|+.||.+++.+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 47999999999988864 4789999999999999877665555432 24479999999 99999999997654
Q ss_pred CCCceEEEEEcCccCccchH---HhhcCCcEEEeChHHHHHHHHc-cCccccceeEEeecchhhhhhCCC-----HHHHH
Q 012013 198 SSKIKSTCIYGGVPKGPQVR---DLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGF-----EPQIK 268 (473)
Q Consensus 198 ~~~~~~~~~~gg~~~~~~~~---~~~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~vVvDEah~l~~~~~-----~~~~~ 268 (473)
++.+..+.+.... .... ......+|+|+|++.|...... ......++++|||||||++..... ...+.
T Consensus 224 --~l~v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 --NLRFALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp --CCCCEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred --CCCEEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 3444444333211 1100 1123468999999887542111 112234689999999999865432 12233
Q ss_pred HHHhh---hhcCCCCccc--------------------------------------------------------------
Q 012013 269 KILSQ---VIIGSPDLKA-------------------------------------------------------------- 283 (473)
Q Consensus 269 ~i~~~---~~~~~~~~~~-------------------------------------------------------------- 283 (473)
.+... +..-+.+...
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 33211 0000000000
Q ss_pred -----------------------------------------cccceee--------------------------------
Q 012013 284 -----------------------------------------NHAIRQH-------------------------------- 290 (473)
Q Consensus 284 -----------------------------------------~~~i~~~-------------------------------- 290 (473)
...+...
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 0000000
Q ss_pred ---------------------EEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHh-CCCCeEEecCCCC
Q 012013 291 ---------------------VDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM-DGWPALSIHGDKS 348 (473)
Q Consensus 291 ---------------------~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~ihg~~~ 348 (473)
...+....|...|.+++.. ..+.++||||+++..++.++..|.. .++.+..+||+++
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 0112234577788888877 4567999999999999999999984 6999999999999
Q ss_pred HHHHHHHHHHHhcCC--CcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHH
Q 012013 349 QAERDWVLSEFKAGK--SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 426 (473)
Q Consensus 349 ~~~r~~~~~~f~~g~--~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 426 (473)
+.+|..+++.|++|+ ++|||||+++++|+|+|++++||++|+|+++..|+||+||++|.|+.+.++++....+.....
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee 619 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQS 619 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHH
Confidence 999999999999998 999999999999999999999999999999999999999999999999877776665555556
Q ss_pred HHHHHHHHhCC
Q 012013 427 ELITILEEAGQ 437 (473)
Q Consensus 427 ~l~~~l~~~~~ 437 (473)
.+.+.+.++..
T Consensus 620 ~i~~~~~~k~~ 630 (968)
T 3dmq_A 620 VLVRWYHEGLD 630 (968)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 66666655433
No 52
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.3e-34 Score=294.77 Aligned_cols=304 Identities=18% Similarity=0.232 Sum_probs=209.7
Q ss_pred CCCCHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 120 FEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.+|+|+|.++++++. .+++++++++||+|||++++. ++..+... +...++|||||+ .|+.||.+++.+|
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 369999999998763 578999999999999998654 44444332 124579999995 6899999999999
Q ss_pred ccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCH--HHHHH----
Q 012013 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFE--PQIKK---- 269 (473)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~--~~~~~---- 269 (473)
... +++..++++... .....++|+|+||+.+.+... .....+++||+||||++.+.... ..+..
T Consensus 109 ~~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~ 178 (500)
T 1z63_A 109 APH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSK 178 (500)
T ss_dssp CTT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEE
T ss_pred CCC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccC
Confidence 754 455555554422 113457999999999875433 22346899999999998654311 11111
Q ss_pred --------------------------------------------------------HHhhhhcCCCCc------cccccc
Q 012013 270 --------------------------------------------------------ILSQVIIGSPDL------KANHAI 287 (473)
Q Consensus 270 --------------------------------------------------------i~~~~~~~~~~~------~~~~~i 287 (473)
++..+.+..... ......
T Consensus 179 ~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~ 258 (500)
T 1z63_A 179 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKI 258 (500)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCe
Confidence 000000000000 000000
Q ss_pred eeeEEe--------------------------------------------------------cCchhhHHHHHHHHHhHh
Q 012013 288 RQHVDI--------------------------------------------------------VSESQKYNKLVKLLEDIM 311 (473)
Q Consensus 288 ~~~~~~--------------------------------------------------------~~~~~k~~~l~~~l~~~~ 311 (473)
...+.+ .....|...+.+++.+..
T Consensus 259 ~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~ 338 (500)
T 1z63_A 259 ETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEAL 338 (500)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHH
Confidence 000000 012345566667776654
Q ss_pred -CCCeEEEEeCChHHHHHHHHHHHhC-CCCeEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEecccccCCCCCCCCEEEE
Q 012013 312 -DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAG-KSP-IMTATDVAARGLDVKDVKYVIN 387 (473)
Q Consensus 312 -~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~r~~~~~~f~~g-~~~-iLvaT~~~~~Gidi~~v~~Vi~ 387 (473)
.+.++||||++...++.+++.|... ++.+..+||+++..+|..++++|+++ ..+ +|++|+++++|+|++.+++||+
T Consensus 339 ~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~ 418 (500)
T 1z63_A 339 DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH 418 (500)
T ss_dssp TTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE
T ss_pred ccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE
Confidence 4569999999999999999999875 89999999999999999999999998 555 7899999999999999999999
Q ss_pred cCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCC
Q 012013 388 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVS 440 (473)
Q Consensus 388 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 440 (473)
+|+|||+..|.||+||++|.|+...++++..-........+.+.+..+...+.
T Consensus 419 ~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~ 471 (500)
T 1z63_A 419 FDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFK 471 (500)
T ss_dssp SSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSS
T ss_pred eCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877655444444445566666655544333
No 53
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=9.3e-35 Score=305.50 Aligned_cols=275 Identities=17% Similarity=0.189 Sum_probs=171.3
Q ss_pred CCCHHHHHHHHHHhc----C-CcEEEEccCCCChhHHhHHHHHHHHhcCCC--CCCCCCCEEEEEcCcHHHHHHHH-HHH
Q 012013 121 EPTPIQAQGWPMALK----G-RDLIGIAETGSGKTLAYLLPAIVHVNAQPF--LAPGDGPIVLVLAPTRELAVQIQ-QES 192 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~----~-~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~--~~~~~~~~vlil~Pt~~La~q~~-~~~ 192 (473)
.|+|+|.++++.++. + +++++++|||+|||++++. ++..+..... ......+++|||+||++|+.||. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998875 4 5689999999999999654 4444443210 01124688999999999999999 777
Q ss_pred HHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHc----cCccccceeEEeecchhhhhhC---CCHH
Q 012013 193 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES----HNTNLRRVTYLVLDEADRMLDM---GFEP 265 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~----~~~~l~~~~~vVvDEah~l~~~---~~~~ 265 (473)
+.|+.. +..+.++ ....+.+|+|+||++|...+.. .......+++||+||||++... .+..
T Consensus 257 ~~~~~~----~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~ 324 (590)
T 3h1t_A 257 TPFGDA----RHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWRE 324 (590)
T ss_dssp TTTCSS----EEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHH
T ss_pred Hhcchh----hhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHH
Confidence 776532 2222222 1235679999999999887642 2234567899999999999864 3433
Q ss_pred HHHHHHhh-hhcCCCCccccc------------------------cce--ee--EEec----------------------
Q 012013 266 QIKKILSQ-VIIGSPDLKANH------------------------AIR--QH--VDIV---------------------- 294 (473)
Q Consensus 266 ~~~~i~~~-~~~~~~~~~~~~------------------------~i~--~~--~~~~---------------------- 294 (473)
.+..+... +..-+++..... .+. .. +...
T Consensus 325 il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (590)
T 3h1t_A 325 ILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPD 404 (590)
T ss_dssp HHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-------------------
T ss_pred HHHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccc
Confidence 33332211 111111111000 000 00 0000
Q ss_pred -----C-------chhhHHH----HHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCC--------CeEEecCCCCHH
Q 012013 295 -----S-------ESQKYNK----LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW--------PALSIHGDKSQA 350 (473)
Q Consensus 295 -----~-------~~~k~~~----l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~--------~~~~ihg~~~~~ 350 (473)
. ...+... +.+++......+++||||+++++|+.+++.|...+. .+..+||+++.
T Consensus 405 ~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~- 483 (590)
T 3h1t_A 405 GEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK- 483 (590)
T ss_dssp ----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-
T ss_pred ccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-
Confidence 0 0011222 333344444457999999999999999999976432 26788998764
Q ss_pred HHHHHHHHHhcCCCc---EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCC
Q 012013 351 ERDWVLSEFKAGKSP---IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA 409 (473)
Q Consensus 351 ~r~~~~~~f~~g~~~---iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~ 409 (473)
+|..++++|++++.+ |||||+++++|+|+|++++||++++|+|+..|+||+||++|.+.
T Consensus 484 ~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 484 IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 799999999998766 88899999999999999999999999999999999999999875
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.3e-34 Score=291.75 Aligned_cols=256 Identities=16% Similarity=0.153 Sum_probs=178.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCcc
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 214 (473)
+++++++++|||||||++|++|++..+... ++++||++||++||.|+.+.+. ++.+....+....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 368999999999999999999999776553 6789999999999999998775 2334433332111
Q ss_pred chHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhh-------hhcCCCCcccc---
Q 012013 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ-------VIIGSPDLKAN--- 284 (473)
Q Consensus 215 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~-------~~~~~~~~~~~--- 284 (473)
.-..+..+.++|.+.+.+.+.. ...+.++++||+||+|++ +..+..+...+... +...++++...
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1122446778899888776665 445789999999999997 32222222222221 12222221110
Q ss_pred ----ccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHh
Q 012013 285 ----HAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK 360 (473)
Q Consensus 285 ----~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~ 360 (473)
......+.......+...+.+.+.+ ..+++||||+++++++.+++.|+..++.+..+||+ +|..+++.|+
T Consensus 141 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~ 214 (431)
T 2v6i_A 141 FPPSNSPIIDEETRIPDKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCK 214 (431)
T ss_dssp SCCCSSCCEEEECCCCSSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHH
T ss_pred hcCCCCceeeccccCCHHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhc
Confidence 0000011111111222333444444 25689999999999999999999999999999997 5778999999
Q ss_pred cCCCcEEEEecccccCCCCCCCCE-----------------EEEcCCCCCHHHHHHhhccccCCCCC-cEEEEEe
Q 012013 361 AGKSPIMTATDVAARGLDVKDVKY-----------------VINYDFPGSLEDYVHRIGRTGRAGAK-GTAYTFF 417 (473)
Q Consensus 361 ~g~~~iLvaT~~~~~Gidi~~v~~-----------------Vi~~~~p~s~~~~~Qr~GR~gR~g~~-g~~~~~~ 417 (473)
+|+.+|||||+++++|||+| +.+ ||+++.|.+.++|+||+||+||.|.. +.+++|.
T Consensus 215 ~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 215 SEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 99999999999999999999 554 67889999999999999999999854 5555554
No 55
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.3e-33 Score=291.32 Aligned_cols=262 Identities=18% Similarity=0.184 Sum_probs=186.2
Q ss_pred HHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 012013 128 QGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIY 207 (473)
Q Consensus 128 ~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~ 207 (473)
......+++++++++||||||||+. ++..+.. .+..+|++||++||.|+++.+.+. ++.+..++
T Consensus 147 ~p~ar~l~rk~vlv~apTGSGKT~~----al~~l~~--------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~llt 210 (677)
T 3rc3_A 147 YPDARAMQRKIIFHSGPTNSGKTYH----AIQKYFS--------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVT 210 (677)
T ss_dssp CHHHHTSCCEEEEEECCTTSSHHHH----HHHHHHH--------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEEEC
T ss_pred CHHHHhcCCCEEEEEcCCCCCHHHH----HHHHHHh--------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEE
Confidence 3344557889999999999999983 3344433 223599999999999999999886 46777787
Q ss_pred cCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhhhhc-------CCCC
Q 012013 208 GGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQVII-------GSPD 280 (473)
Q Consensus 208 gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~~~-------~~~~ 280 (473)
|+..... .......+++++|++.+. ....+++|||||||++++.++...+..++..+.. .+++
T Consensus 211 G~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT 280 (677)
T 3rc3_A 211 GEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAA 280 (677)
T ss_dssp SSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGG
T ss_pred CCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccch
Confidence 7754311 000123678888874421 2467899999999999999999888877765320 0110
Q ss_pred ccccccc----eeeEEec-----CchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHH
Q 012013 281 LKANHAI----RQHVDIV-----SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAE 351 (473)
Q Consensus 281 ~~~~~~i----~~~~~~~-----~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~ 351 (473)
......+ ...+.+. .........+..+... ....||||+++++++.+++.|+..++.+..+||+|++.+
T Consensus 281 ~~~i~~l~~~~~~~~~v~~~~r~~~l~~~~~~l~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~ 358 (677)
T 3rc3_A 281 IDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLDNL--RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGT 358 (677)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCSSCEEECSSCCCSGGGC--CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHH
T ss_pred HHHHHHHHHhcCCceEEEEeeecchHHHHHHHHHHHHhc--CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHH
Confidence 0000000 0000000 0000000000111111 234589999999999999999999999999999999999
Q ss_pred HHHHHHHHhc--CCCcEEEEecccccCCCCCCCCEEEEcCC--------------CCCHHHHHHhhccccCCCCC---cE
Q 012013 352 RDWVLSEFKA--GKSPIMTATDVAARGLDVKDVKYVINYDF--------------PGSLEDYVHRIGRTGRAGAK---GT 412 (473)
Q Consensus 352 r~~~~~~f~~--g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~--------------p~s~~~~~Qr~GR~gR~g~~---g~ 412 (473)
|..+++.|++ |..+|||||+++++|||+ ++++||+++. |.+.++|+||+|||||.|.. |.
T Consensus 359 R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~ 437 (677)
T 3rc3_A 359 KLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGE 437 (677)
T ss_dssp HHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEE
T ss_pred HHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEE
Confidence 9999999999 889999999999999999 8999999998 78999999999999999965 55
Q ss_pred EEEEec
Q 012013 413 AYTFFT 418 (473)
Q Consensus 413 ~~~~~~ 418 (473)
|+.+..
T Consensus 438 v~~l~~ 443 (677)
T 3rc3_A 438 VTTMNH 443 (677)
T ss_dssp EEESST
T ss_pred EEEEec
Confidence 555443
No 56
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=4e-32 Score=277.29 Aligned_cols=290 Identities=22% Similarity=0.250 Sum_probs=218.4
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 199 (473)
..|++.|..+.-.+.+|+ |+.+.||+|||+++.+|++...+. +..|.||+|++.||.|-.+++..+...+
T Consensus 74 ~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp CCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 368889988888887776 889999999999999999877765 6679999999999999999999999999
Q ss_pred CceEEEEEcCc------------------------------------------------cCccchHHhhcCCcEEEeChH
Q 012013 200 KIKSTCIYGGV------------------------------------------------PKGPQVRDLQKGVEIVIATPG 231 (473)
Q Consensus 200 ~~~~~~~~gg~------------------------------------------------~~~~~~~~~~~~~~Iiv~Tp~ 231 (473)
++.+.+++... ......+.-.-.|||+++|..
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~ 223 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNN 223 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHH
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCc
Confidence 99999998821 111122222335899999987
Q ss_pred HHH-HHHHcc------CccccceeEEeecchhhhhhCC-------------CH---------------------------
Q 012013 232 RLI-DMLESH------NTNLRRVTYLVLDEADRMLDMG-------------FE--------------------------- 264 (473)
Q Consensus 232 ~l~-~~l~~~------~~~l~~~~~vVvDEah~l~~~~-------------~~--------------------------- 264 (473)
-|- +.|..+ ....+.+.+.||||+|.++=.. -.
T Consensus 224 EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~ 303 (822)
T 3jux_A 224 EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKART 303 (822)
T ss_dssp HHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSC
T ss_pred chhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCe
Confidence 764 444422 2234668999999999754100 00
Q ss_pred --------HHHHHHHh------------------h---------------------------------------------
Q 012013 265 --------PQIKKILS------------------Q--------------------------------------------- 273 (473)
Q Consensus 265 --------~~~~~i~~------------------~--------------------------------------------- 273 (473)
..++.++. .
T Consensus 304 v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiE 383 (822)
T 3jux_A 304 IILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIE 383 (822)
T ss_dssp EEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHH
T ss_pred EEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHH
Confidence 00111100 0
Q ss_pred ---------------------------------------------------hhcCCCCccccccce-eeEEecCchhhHH
Q 012013 274 ---------------------------------------------------VIIGSPDLKANHAIR-QHVDIVSESQKYN 301 (473)
Q Consensus 274 ---------------------------------------------------~~~~~~~~~~~~~i~-~~~~~~~~~~k~~ 301 (473)
+.+ |+......+. +.+.......|..
T Consensus 384 aKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~I--Ptnkp~~R~d~~d~vy~t~~eK~~ 461 (822)
T 3jux_A 384 AKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVI--PTHKPMIRKDHDDLVFRTQKEKYE 461 (822)
T ss_dssp HHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEEC--CCSSCCCCEECCCEEESSHHHHHH
T ss_pred HHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEE--CCCCCcceeecCcEEEecHHHHHH
Confidence 001 1100111111 1234456778999
Q ss_pred HHHHHHHhHh-CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC
Q 012013 302 KLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 380 (473)
Q Consensus 302 ~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~ 380 (473)
.+.+.+.... .+.++||||+|++.++.++..|.+.|+++.++||+..+.++..+...|+.| .|+|||++++||+||+
T Consensus 462 al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~ 539 (822)
T 3jux_A 462 KIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIK 539 (822)
T ss_dssp HHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCC
T ss_pred HHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCcc
Confidence 9998887753 567999999999999999999999999999999996666666666666666 5999999999999998
Q ss_pred --------CCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHH
Q 012013 381 --------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 423 (473)
Q Consensus 381 --------~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 423 (473)
+..+||+++.|.|...|+||+||+||.|.+|.+++|++..|..
T Consensus 540 lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 540 LGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp CCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHH
T ss_pred CCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHH
Confidence 6679999999999999999999999999999999999988753
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=297.35 Aligned_cols=367 Identities=14% Similarity=0.207 Sum_probs=240.7
Q ss_pred ccccccCCccccCCCHHHHHHHHHhccce-e--ccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh--
Q 012013 60 EKNFYVESPSVAAMSEREVEEYRQQREIT-V--EGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-- 134 (473)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~--~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~-- 134 (473)
+.+.+.....+.....+.+..|....... . .....+.....|..+...+... .-.+|+|+|.+++.+++
T Consensus 178 ~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~egv~~l~~~ 251 (800)
T 3mwy_W 178 DEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRDFQLTGINWMAFL 251 (800)
T ss_dssp TTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCTHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCHHHHHHHHHHHHH
Confidence 44444444455556777788887653221 1 1111222223344433222211 12479999999998776
Q ss_pred --cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccC
Q 012013 135 --KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (473)
Q Consensus 135 --~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~ 212 (473)
.++++|++++||+|||++++..+...+.... ....+||||| ..|+.||.+++.++.+. +.+.+.+|....
T Consensus 252 ~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-----~~~~~LIV~P-~sll~qW~~E~~~~~p~--~~v~~~~g~~~~ 323 (800)
T 3mwy_W 252 WSKGDNGILADEMGLGKTVQTVAFISWLIFARR-----QNGPHIIVVP-LSTMPAWLDTFEKWAPD--LNCICYMGNQKS 323 (800)
T ss_dssp HTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-----CCSCEEEECC-TTTHHHHHHHHHHHSTT--CCEEECCCSSHH
T ss_pred hhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-----CCCCEEEEEC-chHHHHHHHHHHHHCCC--ceEEEEeCCHHH
Confidence 6889999999999999986655443332211 1345899999 57889999999999754 566666665443
Q ss_pred ccchHH------------hhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCH----------------
Q 012013 213 GPQVRD------------LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFE---------------- 264 (473)
Q Consensus 213 ~~~~~~------------~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~---------------- 264 (473)
...... ....++|+|+|++.+...... .....+++|||||||++.+....
T Consensus 324 r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~L 401 (800)
T 3mwy_W 324 RDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLI 401 (800)
T ss_dssp HHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEe
Confidence 322221 123578999999998764332 11236899999999987432100
Q ss_pred ---------HH----------------------------------HHHHHhhhhcCCCC--cc--ccccceeeEE-----
Q 012013 265 ---------PQ----------------------------------IKKILSQVIIGSPD--LK--ANHAIRQHVD----- 292 (473)
Q Consensus 265 ---------~~----------------------------------~~~i~~~~~~~~~~--~~--~~~~i~~~~~----- 292 (473)
.. +..++..+.+.... .. ........+.
T Consensus 402 TgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~ 481 (800)
T 3mwy_W 402 TGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSD 481 (800)
T ss_dssp CSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCH
T ss_pred eCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCH
Confidence 00 00000000000000 00 0000000000
Q ss_pred ---------------------------------------------------------------------ecCchhhHHHH
Q 012013 293 ---------------------------------------------------------------------IVSESQKYNKL 303 (473)
Q Consensus 293 ---------------------------------------------------------------------~~~~~~k~~~l 303 (473)
......|...|
T Consensus 482 ~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L 561 (800)
T 3mwy_W 482 VQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLL 561 (800)
T ss_dssp HHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHH
Confidence 00124567777
Q ss_pred HHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCC---cEEEEecccccCCCC
Q 012013 304 VKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS---PIMTATDVAARGLDV 379 (473)
Q Consensus 304 ~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~---~iLvaT~~~~~Gidi 379 (473)
.++|..+.. +.++||||+....++.|.+.|...++.+..+||+++..+|..+++.|+++.. .+|++|.++++|||+
T Consensus 562 ~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL 641 (800)
T 3mwy_W 562 DQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINL 641 (800)
T ss_dssp HHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCC
T ss_pred HHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCc
Confidence 788877654 4599999999999999999999999999999999999999999999998654 489999999999999
Q ss_pred CCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCCHH
Q 012013 380 KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPE 442 (473)
Q Consensus 380 ~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 442 (473)
+.+++||+||+|||+..+.|++||++|.|++..++++..-....+-..+++.+..+.......
T Consensus 642 ~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~v 704 (800)
T 3mwy_W 642 MTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAI 704 (800)
T ss_dssp TTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC--
T ss_pred cccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999877766555444455566666666655433333
No 58
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-31 Score=282.41 Aligned_cols=294 Identities=18% Similarity=0.206 Sum_probs=203.9
Q ss_pred CCCCHHHHHHHHHHh---------cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q 012013 120 FEPTPIQAQGWPMAL---------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~---------~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 190 (473)
..|+|||.+++.++. .+..+|++++||+|||++++..+...+...+. ......++|||||+ +|+.||.+
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-CKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-SSCSCSCEEEEECH-HHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-ccCCCCcEEEEecH-HHHHHHHH
Confidence 368999999999874 34578999999999999976655544443221 11224569999997 79999999
Q ss_pred HHHHhccCCCceEEEEEcCccCccc--hHHhh------cCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCC
Q 012013 191 ESTKFGASSKIKSTCIYGGVPKGPQ--VRDLQ------KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~gg~~~~~~--~~~~~------~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~ 262 (473)
++.+|... .+.++.++++...... ..... ..++|+|+|++.+..... ......+++||+||||++.+..
T Consensus 132 E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 132 EVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh
Confidence 99999755 4566666666432211 11111 147899999999876532 2223468899999999864321
Q ss_pred -----------------------------CHHH---------------------------------------------HH
Q 012013 263 -----------------------------FEPQ---------------------------------------------IK 268 (473)
Q Consensus 263 -----------------------------~~~~---------------------------------------------~~ 268 (473)
+... +.
T Consensus 209 ~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 288 (644)
T 1z3i_X 209 NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELI 288 (644)
T ss_dssp HHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHH
Confidence 0000 00
Q ss_pred HHHhhhhcCCCCcc----ccccceeeEE----------------------------------------------------
Q 012013 269 KILSQVIIGSPDLK----ANHAIRQHVD---------------------------------------------------- 292 (473)
Q Consensus 269 ~i~~~~~~~~~~~~----~~~~i~~~~~---------------------------------------------------- 292 (473)
.++..+.+...... ........+.
T Consensus 289 ~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~ 368 (644)
T 1z3i_X 289 SIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYE 368 (644)
T ss_dssp HHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHH
Confidence 11100000000000 0000000000
Q ss_pred -------------------------ecCchhhHHHHHHHHHhHh--CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecC
Q 012013 293 -------------------------IVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG 345 (473)
Q Consensus 293 -------------------------~~~~~~k~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg 345 (473)
......|...+..++.... .+.++||||++...++.+...|...++.+..+||
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G 448 (644)
T 1z3i_X 369 KCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDG 448 (644)
T ss_dssp HHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECS
T ss_pred HHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeC
Confidence 0011344555555555543 3679999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCc---EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEec
Q 012013 346 DKSQAERDWVLSEFKAGKSP---IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 418 (473)
Q Consensus 346 ~~~~~~r~~~~~~f~~g~~~---iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 418 (473)
+++..+|..++++|+++... +|++|+++++|+|++.+++||+||+|||+..+.|++||++|.|+...++++..
T Consensus 449 ~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~l 524 (644)
T 1z3i_X 449 TMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRL 524 (644)
T ss_dssp SCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEE
T ss_pred CCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEE
Confidence 99999999999999998654 89999999999999999999999999999999999999999999876555433
No 59
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.97 E-value=6.2e-31 Score=242.64 Aligned_cols=183 Identities=50% Similarity=0.897 Sum_probs=156.5
Q ss_pred cCCCCCccCCccc-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCC-C
Q 012013 91 GRDVPKPVKSFRD-VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-A 168 (473)
Q Consensus 91 ~~~~p~~~~~f~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~-~ 168 (473)
....|.|..+|++ +++++.+++++.+.+|.+|+|+|.++++.+++++++++++|||+|||++|++|++..+...... .
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 4568999999999 7999999999999999999999999999999999999999999999999999999887643211 1
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCcccccee
Q 012013 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVT 248 (473)
Q Consensus 169 ~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 248 (473)
...++++||++||++|+.|+.+++.++. ..++.+..++|+.....+...+..+++|+|+||++|.+++......+.+++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 2347889999999999999999999986 457889999999988888888888899999999999999988888889999
Q ss_pred EEeecchhhhhhCCCHHHHHHHHhhh
Q 012013 249 YLVLDEADRMLDMGFEPQIKKILSQV 274 (473)
Q Consensus 249 ~vVvDEah~l~~~~~~~~~~~i~~~~ 274 (473)
+||+||||++.+++|...+..++..+
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~ 195 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDV 195 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHS
T ss_pred EEEEECHHHHhccchHHHHHHHHHhC
Confidence 99999999999999999999997754
No 60
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.97 E-value=3.2e-31 Score=248.58 Aligned_cols=187 Identities=43% Similarity=0.741 Sum_probs=166.7
Q ss_pred ceeccCCCCC--ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcC
Q 012013 87 ITVEGRDVPK--PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQ 164 (473)
Q Consensus 87 i~~~~~~~p~--~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~ 164 (473)
+.+.+...|. ++.+|+++++++.++++|...+|.+|+|+|.++++.+++++++++++|||+|||++|++|++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~ 88 (253)
T 1wrb_A 9 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQ 88 (253)
T ss_dssp CCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred eeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhh
Confidence 4456777776 89999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CCC----CCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHcc
Q 012013 165 PFL----APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH 240 (473)
Q Consensus 165 ~~~----~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~ 240 (473)
... ....++++||++||++|+.|+.+++.++....++.+..++|+.....+...+..+++|+|+||++|.+++...
T Consensus 89 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 168 (253)
T 1wrb_A 89 DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN 168 (253)
T ss_dssp CC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT
T ss_pred ccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 211 1223578999999999999999999999888889999999998887777777788999999999999999888
Q ss_pred CccccceeEEeecchhhhhhCCCHHHHHHHHhh
Q 012013 241 NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (473)
Q Consensus 241 ~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~ 273 (473)
...+.++++||+||||++++++|.+.+..++..
T Consensus 169 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 201 (253)
T 1wrb_A 169 KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEE 201 (253)
T ss_dssp SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHS
T ss_pred CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhh
Confidence 778899999999999999999999999998874
No 61
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=7.4e-31 Score=244.86 Aligned_cols=193 Identities=34% Similarity=0.613 Sum_probs=165.0
Q ss_pred HHHHHHHhccceeccCCCCCccCCcccC----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHH
Q 012013 77 EVEEYRQQREITVEGRDVPKPVKSFRDV----GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 77 ~~~~~~~~~~i~~~~~~~p~~~~~f~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~ 152 (473)
++..+++...+.+.+.+.|.|+.+|+++ ++++.+++++.+.+|.+|+|+|.++++.+++++++++++|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677888899999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccch-HHhhcCCcEEEeChH
Q 012013 153 YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV-RDLQKGVEIVIATPG 231 (473)
Q Consensus 153 ~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-~~~~~~~~Iiv~Tp~ 231 (473)
|++|++..+... ...++++||++||++|+.|+.+++.++....++.+..++++....... .....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999888642 223678999999999999999999999888888888777665432221 223456899999999
Q ss_pred HHHHHHHcc--CccccceeEEeecchhhhhh---CCCHHHHHHHHhh
Q 012013 232 RLIDMLESH--NTNLRRVTYLVLDEADRMLD---MGFEPQIKKILSQ 273 (473)
Q Consensus 232 ~l~~~l~~~--~~~l~~~~~vVvDEah~l~~---~~~~~~~~~i~~~ 273 (473)
+|.+++... ...+.++++||+||||++.+ .+|...+..++..
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~ 205 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLA 205 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHh
Confidence 999999876 45688999999999999998 5677887777653
No 62
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.97 E-value=3.3e-30 Score=229.20 Aligned_cols=168 Identities=46% Similarity=0.707 Sum_probs=144.9
Q ss_pred cccccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhc
Q 012013 282 KANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 361 (473)
Q Consensus 282 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~ 361 (473)
....++.+.+..+....|...|.+++.....+.++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 44567899999999999999999999986667799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCCH
Q 012013 362 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSP 441 (473)
Q Consensus 362 g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 441 (473)
|+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|++|.|++|+++.+...++++.+.+....+++|+
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccC
Q 012013 442 ELAAMGRG 449 (473)
Q Consensus 442 ~l~~~~~~ 449 (473)
+|.+|+..
T Consensus 175 ~l~~~a~~ 182 (185)
T 2jgn_A 175 WLENMAYE 182 (185)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99999864
No 63
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.97 E-value=3.4e-30 Score=239.08 Aligned_cols=178 Identities=33% Similarity=0.504 Sum_probs=147.8
Q ss_pred CCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCC
Q 012013 92 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171 (473)
Q Consensus 92 ~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 171 (473)
.+.|.+..+|+++++++.+++++...+|..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..
T Consensus 23 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~~ 97 (237)
T 3bor_A 23 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----FK 97 (237)
T ss_dssp ----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----SC
T ss_pred CCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CC
Confidence 4567788999999999999999999999999999999999999999999999999999999999999887532 23
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcC-CcEEEeChHHHHHHHHccCccccceeEE
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYL 250 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~~~~v 250 (473)
++++||++||++|+.|+.+.++++....++.+..++|+.....+...+..+ ++|+|+||++|.+++......+.++++|
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 678999999999999999999999888888899999988776666666555 8999999999999998877778899999
Q ss_pred eecchhhhhhCCCHHHHHHHHhhh
Q 012013 251 VLDEADRMLDMGFEPQIKKILSQV 274 (473)
Q Consensus 251 VvDEah~l~~~~~~~~~~~i~~~~ 274 (473)
|+||||++.+++|...+..++..+
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~ 201 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKL 201 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHS
T ss_pred EECCchHhhccCcHHHHHHHHHhC
Confidence 999999999999999988887653
No 64
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=6.2e-30 Score=236.21 Aligned_cols=179 Identities=31% Similarity=0.500 Sum_probs=150.8
Q ss_pred ccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCC
Q 012013 90 EGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAP 169 (473)
Q Consensus 90 ~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~ 169 (473)
.++..|.+..+|+++++++.+.+.+.+.+|.+|+|+|.++++.+++++++++++|||+|||++|++|++..+...
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----- 89 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE----- 89 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 355667888999999999999999999999999999999999999999999999999999999999999887542
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCcccccee
Q 012013 170 GDGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVT 248 (473)
Q Consensus 170 ~~~~~vlil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 248 (473)
..++++||++||++|+.|+.+.++++.... ++++..++|+.....+...+ .+++|+|+||++|.+++......+.+++
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~ 168 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIR 168 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCC
Confidence 236789999999999999999999997654 78888888887765544444 4689999999999999988777788999
Q ss_pred EEeecchhhhhhCC-CHHHHHHHHhhh
Q 012013 249 YLVLDEADRMLDMG-FEPQIKKILSQV 274 (473)
Q Consensus 249 ~vVvDEah~l~~~~-~~~~~~~i~~~~ 274 (473)
+||+||||++.+++ |.+.+..++..+
T Consensus 169 ~lViDEah~~~~~~~~~~~~~~i~~~~ 195 (230)
T 2oxc_A 169 LFILDEADKLLEEGSFQEQINWIYSSL 195 (230)
T ss_dssp EEEESSHHHHHSTTSSHHHHHHHHHHS
T ss_pred EEEeCCchHhhcCcchHHHHHHHHHhC
Confidence 99999999999997 999998887653
No 65
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=226.26 Aligned_cols=166 Identities=40% Similarity=0.625 Sum_probs=150.9
Q ss_pred cccccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhc
Q 012013 282 KANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 361 (473)
Q Consensus 282 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~ 361 (473)
....++.+.+..+....|...|.+++... ..++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++
T Consensus 25 ~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~ 102 (191)
T 2p6n_A 25 AASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE 102 (191)
T ss_dssp ---CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc
Confidence 34567889999999999999999988763 4589999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccc-cHHHHHHHHHHHHHhCCCCC
Q 012013 362 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVS 440 (473)
Q Consensus 362 g~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~ 440 (473)
|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|++|.+++|+++. +...++.+.+.+....+.+|
T Consensus 103 g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~p 182 (191)
T 2p6n_A 103 GKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 182 (191)
T ss_dssp TSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCCC
T ss_pred CCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999986 78899999999999999999
Q ss_pred HHHHHhccC
Q 012013 441 PELAAMGRG 449 (473)
Q Consensus 441 ~~l~~~~~~ 449 (473)
+.|.+|+++
T Consensus 183 ~~l~~~~~g 191 (191)
T 2p6n_A 183 PVLQVLHCG 191 (191)
T ss_dssp HHHHSTTC-
T ss_pred HHHHhhcCC
Confidence 999998763
No 66
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=4.9e-30 Score=235.11 Aligned_cols=173 Identities=35% Similarity=0.605 Sum_probs=152.2
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEE
Q 012013 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (473)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 176 (473)
|..+|+++++++.+.+++.+.+|.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 34679999999999999999999999999999999999999999999999999999999999887542 2367899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCC----CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEee
Q 012013 177 VLAPTRELAVQIQQESTKFGASS----KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (473)
Q Consensus 177 il~Pt~~La~q~~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVv 252 (473)
|++||++|+.|+.+.+.++.... ++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||+
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999987665 67888888887765555555567899999999999999887777899999999
Q ss_pred cchhhhhhCCCHHHHHHHHhhh
Q 012013 253 DEADRMLDMGFEPQIKKILSQV 274 (473)
Q Consensus 253 DEah~l~~~~~~~~~~~i~~~~ 274 (473)
||||++.+++|...+..++..+
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~ 178 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARM 178 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTS
T ss_pred cCchHHhhhChHHHHHHHHHhC
Confidence 9999999999999988887653
No 67
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=9.4e-30 Score=277.41 Aligned_cols=286 Identities=16% Similarity=0.166 Sum_probs=193.7
Q ss_pred CCCCHHHHHHHHHHhc--------------CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 012013 120 FEPTPIQAQGWPMALK--------------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~--------------~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La 185 (473)
..|+|+|.+|++.++. +++++++++||||||+++ ++++..+... ...+++|||||+++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHH
Confidence 3599999999999875 368999999999999996 6666544321 2246899999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCccCccchHHhh-cCCcEEEeChHHHHHHHHccC--ccccceeEEeecchhhhhhCC
Q 012013 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMG 262 (473)
Q Consensus 186 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~--~~l~~~~~vVvDEah~l~~~~ 262 (473)
.||.+.+.+|.... +.++.........+. .+++|+|+||++|..++.... ..+..+.+||+||||++....
T Consensus 344 ~Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~ 417 (1038)
T 2w00_A 344 YQTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGE 417 (1038)
T ss_dssp HHHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHH
T ss_pred HHHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchH
Confidence 99999999987531 123333333344443 468999999999999876532 235678999999999987533
Q ss_pred CHHHHHHHHhh--hh--cCCCCcccc----cc----------------------ce-eeEEec-----------------
Q 012013 263 FEPQIKKILSQ--VI--IGSPDLKAN----HA----------------------IR-QHVDIV----------------- 294 (473)
Q Consensus 263 ~~~~~~~i~~~--~~--~~~~~~~~~----~~----------------------i~-~~~~~~----------------- 294 (473)
+...+...+.. .. ..+|..... .. +. ..+...
T Consensus 418 ~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~ 497 (1038)
T 2w00_A 418 AQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKK 497 (1038)
T ss_dssp HHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHH
T ss_pred HHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHH
Confidence 33333322221 00 111110000 00 00 000010
Q ss_pred ----------CchhhHHHHHH-HHHhHh----------CCCeEEEEeCChHHHHHHHHHHHhCC------------CCe-
Q 012013 295 ----------SESQKYNKLVK-LLEDIM----------DGSRILIFMDTKKGCDQITRQLRMDG------------WPA- 340 (473)
Q Consensus 295 ----------~~~~k~~~l~~-~l~~~~----------~~~~~lVf~~~~~~~~~l~~~L~~~~------------~~~- 340 (473)
....+...+.+ ++.... .+.++||||+++..|..+++.|...+ +++
T Consensus 498 ~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~a 577 (1038)
T 2w00_A 498 LSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIA 577 (1038)
T ss_dssp HHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEE
Confidence 01112223332 223221 23489999999999999999997643 455
Q ss_pred EEecCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcEEEEec
Q 012013 341 LSIHGD----------K----------SQ-----------------------------AERDWVLSEFKAGKSPIMTATD 371 (473)
Q Consensus 341 ~~ihg~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~iLvaT~ 371 (473)
.++|++ + ++ .+|..++++|++++++|||+|+
T Consensus 578 vv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd 657 (1038)
T 2w00_A 578 TIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVG 657 (1038)
T ss_dssp EECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESS
T ss_pred EEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcc
Confidence 455543 2 22 1477899999999999999999
Q ss_pred ccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCC----cEEEEEec
Q 012013 372 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK----GTAYTFFT 418 (473)
Q Consensus 372 ~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~----g~~~~~~~ 418 (473)
++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.++.|+.
T Consensus 658 ~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 658 MFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred hHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999999999 788999999999999999999998753 66665554
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.9e-29 Score=233.98 Aligned_cols=194 Identities=31% Similarity=0.512 Sum_probs=161.1
Q ss_pred CHHHHHHHHHhccceeccCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHh
Q 012013 74 SEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 74 ~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~ 153 (473)
+.++++.+++.... ..+.++.+|+++++++.+.+.|.+.+|..|+|+|.++++.+++++++++++|||+|||++|
T Consensus 5 ~~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 5 ERESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cHhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 34555565555332 1245678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHH
Q 012013 154 LLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL 233 (473)
Q Consensus 154 ~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l 233 (473)
++|++..+..... ....++++||++||++|+.|+.+.++++....++.+..++|+.....+...+ .+++|+|+||++|
T Consensus 80 ~~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l 157 (236)
T 2pl3_A 80 LVPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRL 157 (236)
T ss_dssp HHHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHH
T ss_pred HHHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHH
Confidence 9999988765321 1123678999999999999999999999888888999999988765555544 4689999999999
Q ss_pred HHHHHcc-CccccceeEEeecchhhhhhCCCHHHHHHHHhhh
Q 012013 234 IDMLESH-NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQV 274 (473)
Q Consensus 234 ~~~l~~~-~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~~ 274 (473)
.+++... ...+.++++||+||||++.+++|...+..++..+
T Consensus 158 ~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~ 199 (236)
T 2pl3_A 158 LQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL 199 (236)
T ss_dssp HHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTS
T ss_pred HHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhC
Confidence 9988764 4567889999999999999999999998887753
No 69
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=7.7e-30 Score=238.27 Aligned_cols=173 Identities=46% Similarity=0.734 Sum_probs=156.1
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEE
Q 012013 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 175 (473)
.+..+|+++++++.+.+++...+|.+|+++|.++++.+++++++++++|||+|||++|++|++..+...+ .++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~~ 114 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLFA 114 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSCE
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCceE
Confidence 4567899999999999999999999999999999999999999999999999999999999998887642 25789
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHc-cCccccceeEEeecc
Q 012013 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDE 254 (473)
Q Consensus 176 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~vVvDE 254 (473)
||++||++|+.|+.+.++++....++.+.+++|+.....+...+..+++|+|+||++|.+++.. ....+.++++||+||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999999988888899999999877666777778899999999999998876 445688999999999
Q ss_pred hhhhhhCCCHHHHHHHHhh
Q 012013 255 ADRMLDMGFEPQIKKILSQ 273 (473)
Q Consensus 255 ah~l~~~~~~~~~~~i~~~ 273 (473)
||++.+++|...+..++..
T Consensus 195 ah~l~~~~~~~~l~~i~~~ 213 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKV 213 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHS
T ss_pred hhhhhccChHHHHHHHHHh
Confidence 9999999999999988764
No 70
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=1.6e-29 Score=229.34 Aligned_cols=171 Identities=32% Similarity=0.564 Sum_probs=153.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEE
Q 012013 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (473)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 178 (473)
.+|+++++++.+++.+...+|.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999886542 236789999
Q ss_pred cCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhh
Q 012013 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (473)
Q Consensus 179 ~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 257 (473)
+||++|+.|+.+.+.++.... ++.+..++|+.....+...+..+++|+|+||++|.+.+......+.++++||+||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999998766 6888888888877666666677899999999999999988777788999999999999
Q ss_pred hhhCCCHHHHHHHHhhh
Q 012013 258 MLDMGFEPQIKKILSQV 274 (473)
Q Consensus 258 l~~~~~~~~~~~i~~~~ 274 (473)
+.+.+|...+..++..+
T Consensus 158 ~~~~~~~~~l~~i~~~~ 174 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTL 174 (206)
T ss_dssp HTSTTTHHHHHHHHHHS
T ss_pred hHhhCcHHHHHHHHHhC
Confidence 99999999888887653
No 71
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=1.9e-29 Score=231.91 Aligned_cols=176 Identities=31% Similarity=0.520 Sum_probs=150.8
Q ss_pred CCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCC
Q 012013 92 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171 (473)
Q Consensus 92 ~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 171 (473)
...++++.+|+++++++.+++.+.+.+|.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VK 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CC
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CC
Confidence 3467788999999999999999999999999999999999999999999999999999999999999887542 23
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEe
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLV 251 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vV 251 (473)
++++||++||++|+.|+.+.+.++....++.+..++|+.....+...+.. ++|+|+||++|.+.+......+.++++||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 67899999999999999999999988888999999998876655555444 89999999999999988877888999999
Q ss_pred ecchhhhhhCCCHHHHHHHHhh
Q 012013 252 LDEADRMLDMGFEPQIKKILSQ 273 (473)
Q Consensus 252 vDEah~l~~~~~~~~~~~i~~~ 273 (473)
+||||++.+++|...+..++..
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~ 182 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTL 182 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHH
T ss_pred EcChhHHhhhhhHHHHHHHHHh
Confidence 9999999999999988888765
No 72
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.96 E-value=3.5e-29 Score=239.98 Aligned_cols=179 Identities=30% Similarity=0.464 Sum_probs=151.3
Q ss_pred ceeccCCCCCc---cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHH
Q 012013 87 ITVEGRDVPKP---VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHV 161 (473)
Q Consensus 87 i~~~~~~~p~~---~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT~~~~l~~l~~~ 161 (473)
+.+.+.+.+.| ..+|+++++++.++++|...+|.+|+|+|.++|+.++.+ ++++++||||||||++|++|++..+
T Consensus 77 v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp EEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 34445555444 678999999999999999999999999999999999987 9999999999999999999999987
Q ss_pred hcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHc-
Q 012013 162 NAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES- 239 (473)
Q Consensus 162 ~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~- 239 (473)
... ..++++|||+||++||.|+++.+.++.... ++.+...+++....... ..+++|+|+||++|++++.+
T Consensus 157 ~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~ 228 (300)
T 3fmo_B 157 EPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL 228 (300)
T ss_dssp CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTT
T ss_pred hcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhc
Confidence 643 236789999999999999999999987654 57788888876653332 45679999999999999976
Q ss_pred cCccccceeEEeecchhhhhh-CCCHHHHHHHHhh
Q 012013 240 HNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQ 273 (473)
Q Consensus 240 ~~~~l~~~~~vVvDEah~l~~-~~~~~~~~~i~~~ 273 (473)
....+.++++|||||||+|++ .+|...+..+...
T Consensus 229 ~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~ 263 (300)
T 3fmo_B 229 KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 263 (300)
T ss_dssp CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTT
T ss_pred CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHh
Confidence 456788999999999999998 6888888877654
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.96 E-value=5.5e-29 Score=225.93 Aligned_cols=170 Identities=44% Similarity=0.713 Sum_probs=152.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 012013 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (473)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 179 (473)
+|+++++++.+.+.+.+.++.+|+|+|.++++.+++++++++++|||+|||++|++|++..+.... ....++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 689999999999999999999999999999999999999999999999999999999998876432 123468899999
Q ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhh
Q 012013 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (473)
Q Consensus 180 Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~ 259 (473)
||++|+.|+.+.+.++... +.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||+||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999999998765 67888888887766777777789999999999999998877788999999999999999
Q ss_pred hCCCHHHHHHHHhh
Q 012013 260 DMGFEPQIKKILSQ 273 (473)
Q Consensus 260 ~~~~~~~~~~i~~~ 273 (473)
+.+|...+..++..
T Consensus 158 ~~~~~~~~~~i~~~ 171 (207)
T 2gxq_A 158 SMGFEEEVEALLSA 171 (207)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred ccchHHHHHHHHHh
Confidence 99999999888664
No 74
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.96 E-value=5.7e-29 Score=234.18 Aligned_cols=175 Identities=37% Similarity=0.608 Sum_probs=151.7
Q ss_pred CCcccCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEE
Q 012013 99 KSFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (473)
Q Consensus 99 ~~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 176 (473)
.+|++++ +++.+++.+...||.+|+|+|.++++.++.++++++++|||||||++|++|++..+...+. ....++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-MPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-cccCCceEE
Confidence 4466665 9999999999999999999999999999999999999999999999999999998875321 112367899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccC-ccccceeEEeecch
Q 012013 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN-TNLRRVTYLVLDEA 255 (473)
Q Consensus 177 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~l~~~~~vVvDEa 255 (473)
|++||++||.|+.+.++++....++.+..++|+.....+...+..+++|+|+||++|.+++.... ..+.++++||+|||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 99999999999999999999888899999999988777777777889999999999999887653 56788999999999
Q ss_pred hhhhhCCCHHHHHHHHhhh
Q 012013 256 DRMLDMGFEPQIKKILSQV 274 (473)
Q Consensus 256 h~l~~~~~~~~~~~i~~~~ 274 (473)
|++++++|.+.+..++..+
T Consensus 211 h~l~~~~~~~~l~~i~~~~ 229 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLL 229 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHS
T ss_pred HHHhhhhHHHHHHHHHHhC
Confidence 9999999999999988754
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=1.3e-27 Score=248.39 Aligned_cols=131 Identities=23% Similarity=0.234 Sum_probs=113.8
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
..|+ .|+++|..+++.+++|+ |+.++||+|||++|.+|++...+. +..++|++||++||.|.++++..+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 3688 99999999999999998 899999999999999999766553 557999999999999999999999
Q ss_pred ccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHH-HHHHHccC------cccc---ceeEEeecchhhhh
Q 012013 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLR---RVTYLVLDEADRML 259 (473)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~---~~~~vVvDEah~l~ 259 (473)
...+++++.+++||.+. +.+....+++|+|+||+.| .+++..+. ..++ .+.++||||+|+|+
T Consensus 144 ~~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999999999763 3444456799999999999 78887652 3566 89999999999886
No 76
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1.5e-28 Score=225.36 Aligned_cols=174 Identities=29% Similarity=0.514 Sum_probs=147.6
Q ss_pred CCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCE
Q 012013 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (473)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 174 (473)
+....+|+++++++.+.+++.+.+|.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+++
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 84 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVS 84 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCC
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEE
Confidence 3445679999999999999999999999999999999999999999999999999999999999886542 22568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccCccchHHhhc-CCcEEEeChHHHHHHHHccCccccceeEEee
Q 012013 175 VLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (473)
Q Consensus 175 vlil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVv 252 (473)
+||++||++|+.|+.++++++.... ++++..++|+.....+...+.. .++|+|+||++|.+++......+.++++||+
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 9999999999999999999997665 6888888888776555555544 4699999999999999887777899999999
Q ss_pred cchhhhhh-CCCHHHHHHHHhh
Q 012013 253 DEADRMLD-MGFEPQIKKILSQ 273 (473)
Q Consensus 253 DEah~l~~-~~~~~~~~~i~~~ 273 (473)
||||++.+ .+|...+..++..
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~ 186 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRM 186 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHT
T ss_pred cCHHHHhcccCcHHHHHHHHHh
Confidence 99999987 4677777766553
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=1.4e-27 Score=208.01 Aligned_cols=150 Identities=41% Similarity=0.611 Sum_probs=140.4
Q ss_pred ccccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcC
Q 012013 283 ANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 362 (473)
Q Consensus 283 ~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g 362 (473)
...++.+.+..+....|...|.+++... ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3456888999999999999999999875 456899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHH
Q 012013 363 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILE 433 (473)
Q Consensus 363 ~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 433 (473)
+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|++|.+++|+++.+...++.+.+.+.
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999988888877663
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=8.5e-28 Score=211.17 Aligned_cols=160 Identities=29% Similarity=0.514 Sum_probs=142.8
Q ss_pred ccceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCC
Q 012013 285 HAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 364 (473)
Q Consensus 285 ~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~ 364 (473)
..+.+.+..+....|...|.+++... ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|..
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 46788888899999999999999875 45689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccc-cHHHHHHHHHHHHHhCCCCCHHH
Q 012013 365 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSPEL 443 (473)
Q Consensus 365 ~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~l 443 (473)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++|+++. +...++.+.+.+...-.++|.++
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999876 45677888887777767777765
Q ss_pred HH
Q 012013 444 AA 445 (473)
Q Consensus 444 ~~ 445 (473)
..
T Consensus 163 ~~ 164 (172)
T 1t5i_A 163 DI 164 (172)
T ss_dssp --
T ss_pred ch
Confidence 44
No 79
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=3.5e-28 Score=212.37 Aligned_cols=158 Identities=37% Similarity=0.630 Sum_probs=139.2
Q ss_pred cceeeEEecCchh-hHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCC
Q 012013 286 AIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 364 (473)
Q Consensus 286 ~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~ 364 (473)
++.+.+..+.... |...|.+++... ..+++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+.
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 5677777777666 999999999875 55799999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhCCCCCHHHH
Q 012013 365 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELA 444 (473)
Q Consensus 365 ~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 444 (473)
+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|++|.|++|+++.+...+..+.+.+....+++|..+.
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888887777766665543
No 80
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=2.1e-26 Score=243.05 Aligned_cols=133 Identities=19% Similarity=0.316 Sum_probs=117.1
Q ss_pred hhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 012013 297 SQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 375 (473)
Q Consensus 297 ~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~ 375 (473)
..+...++..+... ..+.++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~ 501 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLRE 501 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCT
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhc
Confidence 34555565555544 35679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCC-----CCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHH
Q 012013 376 GLDVKDVKYVINYDF-----PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 430 (473)
Q Consensus 376 Gidi~~v~~Vi~~~~-----p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 430 (473)
|+|+|++++||++|. |.|..+|+||+||+||. .+|.|++|++..+..+.+.+.+
T Consensus 502 GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 502 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-ARGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp TCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTS-TTCEEEEECSSCCHHHHHHHHH
T ss_pred CccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999999999997 89999999999999999 4899999999877655444433
No 81
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=4.9e-27 Score=207.14 Aligned_cols=153 Identities=29% Similarity=0.525 Sum_probs=135.1
Q ss_pred cccceeeEEecCchh-hHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcC
Q 012013 284 NHAIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 362 (473)
Q Consensus 284 ~~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g 362 (473)
..++.+.+..+.... |...|.+++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 457888888887655 999999988764 456999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecccccCCCCCCCCEEEEcCCC------CCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHhC
Q 012013 363 KSPIMTATDVAARGLDVKDVKYVINYDFP------GSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG 436 (473)
Q Consensus 363 ~~~iLvaT~~~~~Gidi~~v~~Vi~~~~p------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 436 (473)
..+|||||+++++|+|+|++++||+||+| .++.+|+||+||+||.|++|.+++|+++.+...+..+.+.+...-
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 899999999999999999999999999999888777777765443
Q ss_pred C
Q 012013 437 Q 437 (473)
Q Consensus 437 ~ 437 (473)
.
T Consensus 164 ~ 164 (175)
T 2rb4_A 164 K 164 (175)
T ss_dssp E
T ss_pred c
Confidence 3
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=3.4e-26 Score=207.97 Aligned_cols=147 Identities=35% Similarity=0.535 Sum_probs=133.1
Q ss_pred eeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 012013 288 RQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 367 (473)
Q Consensus 288 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iL 367 (473)
.+....+....|...|.+++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|..+||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 44555667788999999999864 45799999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHh
Q 012013 368 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 435 (473)
Q Consensus 368 vaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 435 (473)
|||+++++|+|+|++++||++|+|+++..|+||+||+||.|++|.|++|+++.+...++.+.+.+...
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999988888877766543
No 83
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=2.9e-25 Score=234.17 Aligned_cols=132 Identities=20% Similarity=0.319 Sum_probs=117.1
Q ss_pred hhhHHHHHHHHHhHh-CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 012013 297 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 375 (473)
Q Consensus 297 ~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~ 375 (473)
..+...++..+.... .+.++||||+++..++.+++.|...++++..+||++++.+|..+++.|++|+++|||||+++++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~ 507 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCST
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhC
Confidence 345556655555543 5669999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCC-----CCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHH
Q 012013 376 GLDVKDVKYVINYDF-----PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 429 (473)
Q Consensus 376 Gidi~~v~~Vi~~~~-----p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 429 (473)
|+|+|++++||++|. |.+..+|+||+||+||. .+|.|++|+++.+..+.+.+.
T Consensus 508 GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 508 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp TCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred CcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 999999999999997 99999999999999998 789999999987765544433
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.1e-25 Score=214.08 Aligned_cols=146 Identities=34% Similarity=0.532 Sum_probs=130.2
Q ss_pred ceeeEEecCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 012013 287 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 366 (473)
Q Consensus 287 i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~i 366 (473)
+.+.+..+....|...|.+++.... .+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|..+|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4566777888899999999998765 679999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHH
Q 012013 367 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILE 433 (473)
Q Consensus 367 LvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 433 (473)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.|++|+++.+...++.+.+.+.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~ 148 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHT
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999998777666655544
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=7.8e-27 Score=204.79 Aligned_cols=149 Identities=33% Similarity=0.535 Sum_probs=134.9
Q ss_pred cceeeEEecCc-hhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCC
Q 012013 286 AIRQHVDIVSE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 364 (473)
Q Consensus 286 ~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~ 364 (473)
++.+.+..+.. ..|...|.+++... ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 45566666666 78888888888763 45689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHHHh
Q 012013 365 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 435 (473)
Q Consensus 365 ~iLvaT~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 435 (473)
+|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|++|.+++|+++.+...+..+.+.+...
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 99999999999999999999999999999999999999999999999999999998888877777765443
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.88 E-value=1e-21 Score=203.16 Aligned_cols=280 Identities=18% Similarity=0.198 Sum_probs=163.0
Q ss_pred CCCCCCHHHHHHHHH----HhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 012013 118 GFFEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (473)
Q Consensus 118 ~~~~~~~~Q~~~i~~----i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~ 193 (473)
+| +|+|+|.+++.. +..++++++.||||+|||++|++|++.. +++++|++||++|+.|+.+++.
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~~ 72 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNAK 72 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHHG
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 45 799999998654 4578999999999999999999998764 5789999999999999999888
Q ss_pred HhccCCCceEEEEEcCcc--------Cc------------------------cc---------------hHHhhcCCcEE
Q 012013 194 KFGASSKIKSTCIYGGVP--------KG------------------------PQ---------------VRDLQKGVEIV 226 (473)
Q Consensus 194 ~~~~~~~~~~~~~~gg~~--------~~------------------------~~---------------~~~~~~~~~Ii 226 (473)
++. +++..+.|... .. .. .+.....++||
T Consensus 73 ~l~----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiV 148 (540)
T 2vl7_A 73 LLG----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVI 148 (540)
T ss_dssp GGT----CCEEEC---------------------------------------------------------CTTGGGCSEE
T ss_pred hcC----CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEE
Confidence 752 33333322110 00 00 01123457999
Q ss_pred EeChHHHHHHHHccCc-------cccceeEEeecchhhhhhCC-----------CHH-----------------------
Q 012013 227 IATPGRLIDMLESHNT-------NLRRVTYLVLDEADRMLDMG-----------FEP----------------------- 265 (473)
Q Consensus 227 v~Tp~~l~~~l~~~~~-------~l~~~~~vVvDEah~l~~~~-----------~~~----------------------- 265 (473)
|+|+..|.+....... .+...++|||||||++.+.. +..
T Consensus 149 V~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~ 228 (540)
T 2vl7_A 149 AMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYI 228 (540)
T ss_dssp EEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred EEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 9999999875543221 24678999999999873210 000
Q ss_pred -------------------------------HHHHHHhh-----------------------------------------
Q 012013 266 -------------------------------QIKKILSQ----------------------------------------- 273 (473)
Q Consensus 266 -------------------------------~~~~i~~~----------------------------------------- 273 (473)
.+..+...
T Consensus 229 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~ 308 (540)
T 2vl7_A 229 NLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDV 308 (540)
T ss_dssp HHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCH
T ss_pred HHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHH
Confidence 00000000
Q ss_pred ---------h----hcCCCCccc----cccc----ee------eEEe--cC-chhh----HHHHHHHHHhHh--CCCeEE
Q 012013 274 ---------V----IIGSPDLKA----NHAI----RQ------HVDI--VS-ESQK----YNKLVKLLEDIM--DGSRIL 317 (473)
Q Consensus 274 ---------~----~~~~~~~~~----~~~i----~~------~~~~--~~-~~~k----~~~l~~~l~~~~--~~~~~l 317 (473)
. ++.+.++.. .... .. .+.. +. ..+. ...+.+.+..+. ..+.+|
T Consensus 309 ~~~l~~~~~~~~~~IltSATL~p~~~~~~~f~~~~~~~~g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~~~~~g~~l 388 (540)
T 2vl7_A 309 NQLIEDALNVKTFKVLMSGTLPESLTLTNSYKIVVNESYGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYENSSKSVL 388 (540)
T ss_dssp HHHHHHHTCCSSCEEEEESSCCTTCCCTTEEEEECCCC-CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTCSSEEE
T ss_pred HHHHHHhcCccCCeEEEcccCCCCcccchhcCCchhheecCCcceeccccCCCcccccCHHHHHHHHHHHHHHhCCCCEE
Confidence 0 111112111 0000 00 0000 00 0111 134444444433 346899
Q ss_pred EEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE--EecccccCCCCCC----CCEEEEcCCC
Q 012013 318 IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT--ATDVAARGLDVKD----VKYVINYDFP 391 (473)
Q Consensus 318 Vf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLv--aT~~~~~Gidi~~----v~~Vi~~~~p 391 (473)
||+++...++.+++.|.. + .+.+++.. .++..+++.|+++. .||+ +|..+++|||+|+ +++||++++|
T Consensus 389 vff~S~~~~~~v~~~l~~--~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lP 462 (540)
T 2vl7_A 389 VFFPSYEMLESVRIHLSG--I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLP 462 (540)
T ss_dssp EEESCHHHHHHHHTTCTT--S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCC
T ss_pred EEeCCHHHHHHHHHHhcc--C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCC
Confidence 999999999999998864 2 34556654 46788999999864 6777 7899999999997 7899999988
Q ss_pred CC----H--------------------------HHHHHhhccccCCCCCcEEEEEecc
Q 012013 392 GS----L--------------------------EDYVHRIGRTGRAGAKGTAYTFFTA 419 (473)
Q Consensus 392 ~s----~--------------------------~~~~Qr~GR~gR~g~~g~~~~~~~~ 419 (473)
.. + ..+.|.+||+.|...+--++++++.
T Consensus 463 f~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 463 YPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp CCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred CCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 41 1 2345999999998655444555543
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=185.12 Aligned_cols=147 Identities=22% Similarity=0.228 Sum_probs=111.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHH-HHHHHHHhc
Q 012013 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ-IQQESTKFG 196 (473)
Q Consensus 118 ~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q-~~~~~~~~~ 196 (473)
...+|+|+|.++++.+++++++++.+|||+|||++++++++..+.... ....+.++||++|+++|+.| +.+.+.++.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKK--KASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHH--HTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcc--cccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 345899999999999999999999999999999999999887765421 01125679999999999999 888898887
Q ss_pred cCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccC------ccccceeEEeecchhhhhhCCCHHHH
Q 012013 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN------TNLRRVTYLVLDEADRMLDMGFEPQI 267 (473)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~------~~l~~~~~vVvDEah~l~~~~~~~~~ 267 (473)
.. ++.+..++|+.........+...++|+|+||++|.+.+.... ..+.++++|||||||++.+.++...+
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~ 183 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 183 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHH
Confidence 54 677888888877766666666678999999999999887643 45788999999999999877655544
No 88
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.83 E-value=1.8e-20 Score=176.09 Aligned_cols=140 Identities=18% Similarity=0.240 Sum_probs=104.8
Q ss_pred cCchhhHHHHHHHHHhHh-CCCeEEEEeCChHHHHHHHHHHHhC-CCCeEEecCCCCHHHHHHHHHHHhcC-CCc-EEEE
Q 012013 294 VSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAG-KSP-IMTA 369 (473)
Q Consensus 294 ~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~r~~~~~~f~~g-~~~-iLva 369 (473)
.....|...|.+++.... .+.++||||++...++.+...|... ++.+..+||++++.+|..+++.|+++ ..+ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 456789999999998864 4669999999999999999999875 99999999999999999999999998 677 7899
Q ss_pred ecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccccCCCCCcEEEEEeccccHHHHHHHHHHHH
Q 012013 370 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILE 433 (473)
Q Consensus 370 T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 433 (473)
|+++++|+|++.+++||+||+|||+..|.||+||++|.|+.+.++++..-....+...+++.+.
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~ 235 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLA 235 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHH
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876644433332233334444443
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.82 E-value=1e-20 Score=179.91 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=108.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 199 (473)
.+|+|+|.++++.++.+++.++++|||+|||+++++++...+... ..++||++||++|+.||.+++.++....
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 389999999999999888899999999999999988777665432 3479999999999999999999998766
Q ss_pred CceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHHHHHHHHhh
Q 012013 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (473)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~~~~~i~~~ 273 (473)
...+..++++..... .....++|+|+||+.+.+. ....+.++++||+||||++.. +.+..++..
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~ 248 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISG 248 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTT
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHH
Confidence 677888888765432 2224679999999887543 223467899999999999874 345555443
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=160.61 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=108.7
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 012013 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (473)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~ 188 (473)
.+.+.+.......++++|.++++.+.++++++++||||||||+++.++++....... ......+++++|+++|+.|+
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~---~~~~~~~l~~~p~~~la~q~ 125 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND---RAAECNIVVTQPRRISAVSV 125 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT---CGGGCEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC---CCCceEEEEeccchHHHHHH
Confidence 333444444455679999999999999999999999999999998888888766532 12245899999999999999
Q ss_pred HHHHHHhcc-CCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh-hhCCCH-H
Q 012013 189 QQESTKFGA-SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM-LDMGFE-P 265 (473)
Q Consensus 189 ~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l-~~~~~~-~ 265 (473)
.+.+.+... ..+..+..... ........+++|+|+||++|.+++.. .+.++++||+||||++ ++++|. .
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~ 197 (235)
T 3llm_A 126 AERVAFERGEEPGKSCGYSVR-----FESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLV 197 (235)
T ss_dssp HHHHHHTTTCCTTSSEEEEET-----TEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHH
T ss_pred HHHHHHHhccccCceEEEeec-----hhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHH
Confidence 988876532 23333322111 11111124578999999999999876 3788999999999985 665554 3
Q ss_pred HHHHHH
Q 012013 266 QIKKIL 271 (473)
Q Consensus 266 ~~~~i~ 271 (473)
.++.+.
T Consensus 198 ~l~~i~ 203 (235)
T 3llm_A 198 VLRDVV 203 (235)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.74 E-value=8.2e-17 Score=168.37 Aligned_cols=83 Identities=24% Similarity=0.245 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHH----HhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 120 FEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 120 ~~~~~~Q~~~i~~----i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.+|+|.|.+.+.. +..++++++.||||+|||++|++|++.++... +++++|++||++|+.|+.+++.++
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHH
Confidence 4689999998864 45789999999999999999999999987652 578999999999999999999988
Q ss_pred ccCCCceEEEEEcC
Q 012013 196 GASSKIKSTCIYGG 209 (473)
Q Consensus 196 ~~~~~~~~~~~~gg 209 (473)
.....++++.+.|+
T Consensus 75 ~~~~~~~~~~l~gr 88 (620)
T 4a15_A 75 SSTMKIRAIPMQGR 88 (620)
T ss_dssp HHHSCCCEEECCCH
T ss_pred hhccCeEEEEEECC
Confidence 76556776665553
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.73 E-value=1.8e-17 Score=152.91 Aligned_cols=119 Identities=18% Similarity=0.130 Sum_probs=95.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 199 (473)
.+|+++|.+++..++.++++++++|||+|||++++.++... +.++||++|+++|+.||.+++.+|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 58999999999999999999999999999999987765542 356999999999999999999885
Q ss_pred Cce-EEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhhhhCCCHH
Q 012013 200 KIK-STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP 265 (473)
Q Consensus 200 ~~~-~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~~~~~~ 265 (473)
++. +..+.++.. ...+|+|+|++.+....... ..++++|||||||++.+..+..
T Consensus 157 ~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~~ 211 (237)
T 2fz4_A 157 GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ 211 (237)
T ss_dssp CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHHH
T ss_pred CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHHH
Confidence 456 555555443 24689999999987765421 2458999999999998776543
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.66 E-value=1.7e-16 Score=164.56 Aligned_cols=129 Identities=21% Similarity=0.107 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHH----HhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 121 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 121 ~~~~~Q~~~i~~----i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
+|+|+|.+.+.. +..++++++.||||+|||++|++|++.. +++++|++||++|+.|+.+++.++.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 689999997765 4578999999999999999999999972 6789999999999999999999987
Q ss_pred cCCCceEEEEEcCccC---------------------------------ccch------------------HHhhcCCcE
Q 012013 197 ASSKIKSTCIYGGVPK---------------------------------GPQV------------------RDLQKGVEI 225 (473)
Q Consensus 197 ~~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~~~~~~~I 225 (473)
...++++..+.|.... .... +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7777888877664321 0000 122346899
Q ss_pred EEeChHHHHHHHHccCccc-cceeEEeecchhhhhh
Q 012013 226 VIATPGRLIDMLESHNTNL-RRVTYLVLDEADRMLD 260 (473)
Q Consensus 226 iv~Tp~~l~~~l~~~~~~l-~~~~~vVvDEah~l~~ 260 (473)
||+||..|.+...+....+ ....+|||||||+|.+
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9999999998765443322 4678999999999876
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.71 E-value=5.2e-08 Score=101.74 Aligned_cols=70 Identities=26% Similarity=0.268 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHhcCCcEEEEccCCCChh--HHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 012013 123 TPIQAQGWPMALKGRDLIGIAETGSGKT--LAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (473)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~l~~a~TGsGKT--~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 198 (473)
+++|+++++.++.++.+++.+++|+||| ++++++++..+.. ..+.++++++||..+|.++.+.+..+...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~ 222 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQ 222 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999 4455555554321 12568999999999999998887765433
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.40 E-value=2.1e-06 Score=86.59 Aligned_cols=69 Identities=17% Similarity=0.143 Sum_probs=51.0
Q ss_pred CCCCCCCHHHHHHHHHHhc----CC-cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 012013 117 AGFFEPTPIQAQGWPMALK----GR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (473)
Q Consensus 117 ~~~~~~~~~Q~~~i~~i~~----~~-~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~ 191 (473)
..|..|++-|++++..++. ++ .+++.|+.|+|||.+ +..++..+.... ...+++++||...|..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG------ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT------CCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC------CceEEEecCcHHHHHHHHhh
Confidence 4567899999999987653 23 888899999999976 445555555431 23699999998887766655
Q ss_pred H
Q 012013 192 S 192 (473)
Q Consensus 192 ~ 192 (473)
+
T Consensus 94 ~ 94 (459)
T 3upu_A 94 S 94 (459)
T ss_dssp H
T ss_pred h
Confidence 4
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.34 E-value=6.7e-07 Score=94.26 Aligned_cols=68 Identities=22% Similarity=0.209 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHhcCCc-EEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 121 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~-~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
.+++-|.+|+..++..++ .||.+|+|+|||.+ +..++.++... +.++|+++||..-+.++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t-i~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT-VVEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-HHHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 589999999999987665 57789999999987 44455555543 5689999999999999988887643
No 97
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.32 E-value=5.1e-06 Score=78.18 Aligned_cols=122 Identities=9% Similarity=0.032 Sum_probs=89.3
Q ss_pred CchhhHHHHHHHHHhHhC-CCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 012013 295 SESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 373 (473)
Q Consensus 295 ~~~~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~~~ 373 (473)
..+.|+..|.++|..+.. +.++|||++.....+.+.++|...++.+..+.|.....+ .+. .+....|.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCC
Confidence 467899999888888765 449999999999999999999999999999999855432 221 23455565557766
Q ss_pred ccCCC-----CCCCCEEEEcCCCCCHHHH-HHhhccccCCC--C--CcEEEEEecccc
Q 012013 374 ARGLD-----VKDVKYVINYDFPGSLEDY-VHRIGRTGRAG--A--KGTAYTFFTAAN 421 (473)
Q Consensus 374 ~~Gid-----i~~v~~Vi~~~~p~s~~~~-~Qr~GR~gR~g--~--~g~~~~~~~~~~ 421 (473)
.-|+| +..++.||.||..||+..= +|.+-|+.|.+ + +-.+|.+++.+.
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 66776 6789999999999999874 99999999973 3 345666666543
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.31 E-value=2.3e-06 Score=89.71 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
...+++.|.+|+..++...-+++.+|+|+|||.+ +..++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~-~~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH-HHHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH-HHHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999998877889999999999987 34455555432 2567999999999999999888764
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=4.8e-06 Score=89.29 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
+..+++.|.+|+..++.+.-+++.||+|+|||.+. ..++..+... .+.++|+++||...+.++.+.+.+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 45789999999999988777899999999999873 3344444321 15679999999999999999988753
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.16 E-value=8.3e-06 Score=87.39 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
...+++.|.+|+..++.+.-+++.+|+|+|||.+ +..++..+... .+.++|+++||..-+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4568999999999998877889999999999987 44455555442 2567999999999999998888764
No 101
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.10 E-value=4.3e-06 Score=86.40 Aligned_cols=65 Identities=18% Similarity=0.079 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~ 192 (473)
..+++.|++++..++.++.+++.++.|+|||.+ +..++..+... +.++++++||...|..+.+.+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~-------g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL-------GLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc-------CCeEEEecCcHHHHHHhHhhh
Confidence 357999999999999999999999999999976 33344444332 567999999998887776543
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.07 E-value=0.0002 Score=75.49 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
..+++-|.+++.. ....++|.|+.|||||.+.+- -+.++.... .....++|++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~-ri~~l~~~~---~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVH-RIAWLMSVE---NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHH-HHHHHHHTS---CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHH-HHHHHHHhC---CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999973 356899999999999987443 344444321 1123579999999999999999998764
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.23 E-value=0.0017 Score=63.12 Aligned_cols=70 Identities=13% Similarity=0.014 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
.|+|+|+..+..+...+-+++..+-+.|||.+....++..+...+ +..+++++|++..|..+.+.+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~------g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK------DKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS------SCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC------CCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 789999999987755567888999999999876665555444422 6689999999999988887777654
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.00 E-value=0.0015 Score=67.76 Aligned_cols=73 Identities=12% Similarity=-0.006 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 199 (473)
.|+|+|+..+..+...+.+++..+-++|||.+....++..+...+ +..+++++|+...|..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~------~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK------DKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS------SCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC------CCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 589999999987755677889999999999876655555554432 5689999999999999888888765443
No 105
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=96.85 E-value=0.009 Score=61.42 Aligned_cols=114 Identities=16% Similarity=0.219 Sum_probs=75.8
Q ss_pred HHHHHHHHHhHh--CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe--ccccc
Q 012013 300 YNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT--DVAAR 375 (473)
Q Consensus 300 ~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT--~~~~~ 375 (473)
...+.+.+..+. .++.+|||+++...++.+++. .+.++..-..+++ +..+++.|+...-.||+|| ..+.+
T Consensus 378 ~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~E 451 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAE 451 (551)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecc
Confidence 344555554433 256899999999999998873 3444443333444 3457778864445799998 69999
Q ss_pred CCCCC-----CCCEEEEcCCCCC------------------------------HHHHHHhhccccCCCCCcEEEEEecc
Q 012013 376 GLDVK-----DVKYVINYDFPGS------------------------------LEDYVHRIGRTGRAGAKGTAYTFFTA 419 (473)
Q Consensus 376 Gidi~-----~v~~Vi~~~~p~s------------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~~ 419 (473)
|||+| .++.||....|.. +....|.+||+-|...+--++++++.
T Consensus 452 GiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 452 GIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp SSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred cccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 99999 3678887776531 11234999999998666445555544
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.85 E-value=0.0014 Score=56.91 Aligned_cols=39 Identities=23% Similarity=0.155 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~ 182 (473)
++-.++.+|+|+|||+.++ -++..+... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll-~~~~~~~~~-------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL-SFVEIYKLG-------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH-HHHHHHHHT-------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHH-HHHHHHHHC-------CCeEEEEeecc
Confidence 4557889999999998743 333333322 56788888874
No 107
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.78 E-value=0.0019 Score=68.20 Aligned_cols=70 Identities=16% Similarity=0.063 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
.+++-|.+++... ...++|.|..|||||.+..--+...+.... .....+|+|+.|+..|.++.+.+.+..
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 4789999999763 578899999999999874433433333211 124569999999999999999998864
No 108
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.71 E-value=0.0018 Score=63.88 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=51.5
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchH
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 217 (473)
-.++.|+.|+|||... ..+.. ....+|++||++++..|.+.+.+.+..
T Consensus 163 v~~I~G~aGsGKTt~I-----~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~~~------------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI-----LSRVN--------FEEDLILVPGRQAAEMIRRRANASGII------------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHH-----HHHCC--------TTTCEEEESCHHHHHHHHHHHTTTSCC-------------------
T ss_pred EEEEEcCCCCCHHHHH-----HHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcCcc-------------------
Confidence 4577899999999742 12221 123699999999999998887543110
Q ss_pred HhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh
Q 012013 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (473)
Q Consensus 218 ~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l 258 (473)
.....-|.|.++++- +........+++||||||-.+
T Consensus 211 ---~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp ---CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS
T ss_pred ---ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC
Confidence 011234677655332 222222234889999999743
No 109
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.68 E-value=0.005 Score=65.51 Aligned_cols=71 Identities=17% Similarity=0.067 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 196 (473)
..++|-|.+++.. ....++|.|..|||||.+..--+ .++.... ......+|+|+.|+..|.++.+.+.+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri-~~ll~~~---~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRI-AYLMAEK---HVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHH-HHHHHTT---CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHH-HHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999976 35689999999999998744333 4444321 1123569999999999999999988763
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.64 E-value=0.0022 Score=55.99 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=26.6
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~ 182 (473)
++=.++.+++|+|||+..+ -++..+... +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~~-------g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKIA-------KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHHT-------TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHHC-------CCEEEEEEecc
Confidence 4456778999999998744 444444332 67799998873
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.45 E-value=0.0013 Score=58.88 Aligned_cols=90 Identities=11% Similarity=0.130 Sum_probs=50.3
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 215 (473)
+.-.++.+++|+|||+..+ -++..+... +.+++++.|...- . -...+....+ ...
T Consensus 12 G~i~litG~mGsGKTT~ll-~~~~r~~~~-------g~kVli~~~~~d~--r---~~~~i~srlG---------~~~--- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELI-RRLHRLEYA-------DVKYLVFKPKIDT--R---SIRNIQSRTG---------TSL--- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHH-HHHHHHHHT-------TCCEEEEEECCCG--G---GCSSCCCCCC---------CSS---
T ss_pred cEEEEEECCCCCcHHHHHH-HHHHHHHhc-------CCEEEEEEeccCc--h---HHHHHHHhcC---------CCc---
Confidence 4456778999999998744 344444332 5678888775310 0 0001111111 100
Q ss_pred hHHhhcCCcEEEeChHHHHHHHHccCccccceeEEeecchhhh
Q 012013 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (473)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l 258 (473)
..+-+.+...+++.+..... -.++++|||||++.+
T Consensus 67 -------~~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 -------PSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 101 (223)
T ss_dssp -------CCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred -------cccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccC
Confidence 12345666777776654322 245899999999864
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.44 E-value=0.0021 Score=56.78 Aligned_cols=39 Identities=15% Similarity=-0.001 Sum_probs=26.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~ 183 (473)
+=.++.+++|+|||+.++-.+...... +.+++++.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~--------g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA--------KQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT--------TCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC--------CCEEEEEEeccC
Confidence 345678999999998754444433333 677999998753
No 113
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.06 E-value=0.016 Score=49.75 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHh---------cCCcEEEEccCCCChhHHh
Q 012013 123 TPIQAQGWPMAL---------KGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 123 ~~~Q~~~i~~i~---------~~~~~l~~a~TGsGKT~~~ 153 (473)
.+.|.+++..+. .++.+++.+|+|+|||..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 445666655443 3678899999999999753
No 114
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.01 E-value=0.028 Score=59.96 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=68.6
Q ss_pred HHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-cccccCC
Q 012013 303 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGL 377 (473)
Q Consensus 303 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT-~~~~~Gi 377 (473)
+.-++..+..+.+++|.++++.-+..+++.+.+ .++.+..+||+++..++..+++.+.+|..+|+|+| ..+...+
T Consensus 407 ll~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~ 486 (780)
T 1gm5_A 407 QLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV 486 (780)
T ss_dssp HHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC
T ss_pred HHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh
Confidence 334444444567999999999988877776653 47899999999999999999999999999999999 5566678
Q ss_pred CCCCCCEEE
Q 012013 378 DVKDVKYVI 386 (473)
Q Consensus 378 di~~v~~Vi 386 (473)
++.++.+||
T Consensus 487 ~~~~l~lVV 495 (780)
T 1gm5_A 487 HFKNLGLVI 495 (780)
T ss_dssp CCSCCCEEE
T ss_pred hccCCceEE
Confidence 888888877
No 115
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.89 E-value=0.0078 Score=53.72 Aligned_cols=39 Identities=18% Similarity=0.068 Sum_probs=27.3
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~ 182 (473)
++=.++.+++|+|||...+-.+...... +.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~--------g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT--------TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC--------CCeEEEEeecC
Confidence 4556778999999998744444443332 67799988864
No 116
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.85 E-value=0.004 Score=54.94 Aligned_cols=40 Identities=18% Similarity=0.063 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~ 183 (473)
|.=.++.+++|+|||+..+ -.+..+... +.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Ll-r~~~r~~~~-------g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELI-RRLRRGIYA-------KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHH-HHHHHHHHT-------TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHH-HHHHHHHHc-------CCceEEEEeccC
Confidence 4456788999999997643 344444332 567899988653
No 117
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.82 E-value=0.017 Score=65.21 Aligned_cols=72 Identities=25% Similarity=0.222 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 120 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.++++-|.++|..- +++++|.|..|||||.+.+--++..+.... ......++|++++|+..|..+.+.+.+.
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~--~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE--NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS--SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 36899999999764 789999999999999885555555554421 1112457999999999999999888764
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.44 E-value=0.0065 Score=50.71 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCChhHH
Q 012013 135 KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (473)
.++.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677899999999999974
No 119
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.23 E-value=0.015 Score=50.45 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 181 (473)
++=.++.+|+|||||.. ++-++...... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHc-------CCeEEEEccc
Confidence 45567789999999965 44444444332 5678888776
No 120
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.18 E-value=0.015 Score=60.31 Aligned_cols=59 Identities=22% Similarity=0.180 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHhc--CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q 012013 121 EPTPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (473)
Q Consensus 121 ~~~~~Q~~~i~~i~~--~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 190 (473)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+ ++..+.. .++|++|+.+-+....+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~~----------~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIAG----------RAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSSS----------CEEEECSSCCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHHh----------CcEEECCCHHHHHHHHH
Confidence 689999999998886 33578889999999965333 3333321 26999999876654433
No 121
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.85 E-value=0.3 Score=41.42 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
...+++.+|+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357899999999999753
No 122
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.74 E-value=0.35 Score=40.91 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
...+++.+|+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 457899999999999753
No 123
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.49 E-value=0.16 Score=49.71 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=68.7
Q ss_pred hhhHH-HHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-
Q 012013 297 SQKYN-KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD- 371 (473)
Q Consensus 297 ~~k~~-~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~- 371 (473)
..|.. .+.-++.....+.++||.+|++.-+..+++.++. .++.+..+||+.+..++...++.+..+..+|+|+|.
T Consensus 47 sGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~ 126 (414)
T 3oiy_A 47 VGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 126 (414)
T ss_dssp SSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHH
Confidence 34443 2333344344567899999999999999999987 578999999999999988889999999999999994
Q ss_pred ccc---cCCCCCCCCEEEE
Q 012013 372 VAA---RGLDVKDVKYVIN 387 (473)
Q Consensus 372 ~~~---~Gidi~~v~~Vi~ 387 (473)
.+. .-++...+.+||.
T Consensus 127 ~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 127 FVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp HHHHCHHHHTTCCCSEEEE
T ss_pred HHHHHHHHhccccccEEEE
Confidence 331 1245567777763
No 124
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.23 E-value=0.27 Score=47.32 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
...+++.+|+|+|||..+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999753
No 125
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.19 E-value=0.063 Score=51.19 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHh----cCC---cEEEEccCCCChhHHhHHHHHHHHh
Q 012013 122 PTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVN 162 (473)
Q Consensus 122 ~~~~Q~~~i~~i~----~~~---~~l~~a~TGsGKT~~~~l~~l~~~~ 162 (473)
+.|||.+++..+. +++ .+++.+|.|+|||..+. .+...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 4688888876654 343 37889999999998644 3334444
No 126
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.12 Score=48.79 Aligned_cols=26 Identities=8% Similarity=-0.142 Sum_probs=18.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHh
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVN 162 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~ 162 (473)
+.++++.+|+|+|||++.- .++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4578999999999998733 3445443
No 127
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.98 E-value=0.19 Score=46.15 Aligned_cols=17 Identities=24% Similarity=0.092 Sum_probs=14.6
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
..+++.+|+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46899999999999854
No 128
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.93 E-value=0.16 Score=47.95 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
...+++.+|+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 35799999999999975
No 129
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.67 E-value=0.074 Score=47.50 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCChhHHh
Q 012013 135 KGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (473)
.+..+++.+|+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999753
No 130
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.28 E-value=0.34 Score=54.06 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=70.3
Q ss_pred hhhHHHHH-HHHHhHhCCCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-
Q 012013 297 SQKYNKLV-KLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT- 370 (473)
Q Consensus 297 ~~k~~~l~-~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT- 370 (473)
..|....+ ..+.....+.+++|.|+|+.-+...++.+.+ .++.+..+++..+..++..+++.+..|..+|+|+|
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~ 714 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 714 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 44543322 3333444566999999999988888877753 35778999999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEE
Q 012013 371 DVAARGLDVKDVKYVI 386 (473)
Q Consensus 371 ~~~~~Gidi~~v~~Vi 386 (473)
..+...+.+.++.+||
T Consensus 715 ~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 715 KLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp HHHHSCCCCSSEEEEE
T ss_pred HHHhCCccccccceEE
Confidence 6677778888888777
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.22 E-value=0.27 Score=47.48 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.5
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
+.+++.+|+|+|||..+
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46899999999999753
No 132
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.87 E-value=0.33 Score=42.95 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCChhHHh
Q 012013 135 KGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (473)
.|.-+++.+|+|+|||+.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4567888999999999753
No 133
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.71 E-value=0.13 Score=48.78 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.7
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
..+++.+|+|+|||+.+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999753
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.57 E-value=0.3 Score=47.11 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=13.6
Q ss_pred cEEEEccCCCChhHH
Q 012013 138 DLIGIAETGSGKTLA 152 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (473)
.+++.+|+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 688999999999975
No 135
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.24 E-value=0.45 Score=47.12 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.8
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
..+++.+|+|+|||..+
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999853
No 136
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.69 E-value=0.57 Score=40.75 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.9
Q ss_pred CcEEEEccCCCChhHH
Q 012013 137 RDLIGIAETGSGKTLA 152 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (473)
..+++.+|+|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3599999999999975
No 137
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.69 E-value=0.53 Score=52.28 Aligned_cols=92 Identities=13% Similarity=0.115 Sum_probs=69.3
Q ss_pred chhhHHHHH-HHHHhHhCCCeEEEEeCChHHHHHHHHHHHh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 012013 296 ESQKYNKLV-KLLEDIMDGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 371 (473)
Q Consensus 296 ~~~k~~~l~-~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~ 371 (473)
...|....+ -++.....+.++||.+|+++-+..+++.++. .++.+..+||+++..++...++.+..+..+|+|+|.
T Consensus 103 GSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp 182 (1104)
T 4ddu_A 103 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 182 (1104)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEH
T ss_pred CCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECH
Confidence 344544332 3333344566899999999999999999988 567899999999998888889999999999999993
Q ss_pred -cccc---CCCCCCCCEEEE
Q 012013 372 -VAAR---GLDVKDVKYVIN 387 (473)
Q Consensus 372 -~~~~---Gidi~~v~~Vi~ 387 (473)
.+.. -+++.++.+||.
T Consensus 183 ~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 183 QFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp HHHHHSHHHHHTSCCSEEEE
T ss_pred HHHHHHHHhhcccCcCEEEE
Confidence 3311 145667887774
No 138
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.57 E-value=0.39 Score=45.21 Aligned_cols=15 Identities=40% Similarity=0.441 Sum_probs=12.9
Q ss_pred cceeEEeecchhhhh
Q 012013 245 RRVTYLVLDEADRML 259 (473)
Q Consensus 245 ~~~~~vVvDEah~l~ 259 (473)
....+|||||+|.+.
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 367899999999986
No 139
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.55 E-value=0.62 Score=46.58 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=39.5
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 198 (473)
.+....+.+-|||+||++ +..+.... +..+|||+|+...|.|++++++.|...
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~~~~---------~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIAERH---------AGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHHHHS---------SSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHH--HHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 355678899999999975 22222211 234899999999999999999998643
No 140
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=91.50 E-value=0.9 Score=46.03 Aligned_cols=61 Identities=10% Similarity=0.150 Sum_probs=55.8
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 012013 311 MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 371 (473)
Q Consensus 311 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~ 371 (473)
...+++||.++++.-+....+.|...++.+..+|+..+..++..++..+..+..+|+++|.
T Consensus 63 ~~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 63 LLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp HSSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred HhCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3457899999999999999999999999999999999999999999999999999999993
No 141
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.50 E-value=0.7 Score=44.27 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
+..+++.+|+|+|||..+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457899999999999753
No 142
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.74 E-value=1.1 Score=39.25 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=52.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----ccCCCCCCC
Q 012013 314 SRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 382 (473)
Q Consensus 314 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~-----~~Gidi~~v 382 (473)
.++||.|++++-+..+++.++.. +..+..++|+.+..++.. .+..+..+|+|+|. .+ ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 38999999999999888877653 678999999988765543 34456779999993 22 234667778
Q ss_pred CEEEE
Q 012013 383 KYVIN 387 (473)
Q Consensus 383 ~~Vi~ 387 (473)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87774
No 143
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.67 E-value=1.5 Score=39.43 Aligned_cols=71 Identities=24% Similarity=0.316 Sum_probs=51.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc------ccCCCCCC
Q 012013 313 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA------ARGLDVKD 381 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~------~~Gidi~~ 381 (473)
..++||.++++.-+..+++.++.. ++.+..++|+.+..++...+ ....+|+|+|. .+ ...+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 347999999999988888777543 78889999998876544333 24678999993 22 13567778
Q ss_pred CCEEEE
Q 012013 382 VKYVIN 387 (473)
Q Consensus 382 v~~Vi~ 387 (473)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 887773
No 144
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.45 E-value=0.2 Score=47.14 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
...+++.+|+|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 36899999999999975
No 145
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.27 E-value=0.25 Score=48.59 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=13.4
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
.+++++++|+|||++..
T Consensus 99 vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEECCCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46777999999998643
No 146
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.24 E-value=1.5 Score=37.77 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=51.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHh----hcCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
++++||.|+++.-+..+.+.+.+. ++.+..++|+.+.......+ .....|+|+| +.+.. ..++..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCcccC
Confidence 456999999999999999988876 36788888887654433222 2357899999 44444 3457778
Q ss_pred eEEee
Q 012013 248 TYLVL 252 (473)
Q Consensus 248 ~~vVv 252 (473)
++||.
T Consensus 124 ~~VI~ 128 (191)
T 2p6n_A 124 QHVIN 128 (191)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88776
No 147
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.17 E-value=1.1 Score=46.26 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=54.3
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHH--hcCCCcEEEEec
Q 012013 312 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF--KAGKSPIMTATD 371 (473)
Q Consensus 312 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f--~~g~~~iLvaT~ 371 (473)
..+.+||.+|++.-+....+.|...++.+..++|+++..++..++..+ ..+..+|||+|.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 456899999999999999999998899999999999999998888888 578899999995
No 148
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.19 E-value=0.27 Score=48.44 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=13.6
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
.+++++++|+|||++..
T Consensus 102 vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 46778999999998643
No 149
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.10 E-value=1.4 Score=40.42 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=18.2
Q ss_pred HhcCCcEEEEccCCCChhHHhHH
Q 012013 133 ALKGRDLIGIAETGSGKTLAYLL 155 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~~~l 155 (473)
+..+.-+++.+|+|+|||+.+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 45677889999999999976443
No 150
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.97 E-value=0.31 Score=44.54 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=16.6
Q ss_pred HhcCCcEEEEccCCCChhHH
Q 012013 133 ALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~ 152 (473)
+..+.-+++++|||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45667788999999999974
No 151
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.94 E-value=1.2 Score=39.07 Aligned_cols=18 Identities=33% Similarity=0.161 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCChhHH
Q 012013 135 KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (473)
.+.-+.+.+|+|+|||+.
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456788899999999974
No 152
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.88 E-value=0.88 Score=42.92 Aligned_cols=65 Identities=17% Similarity=0.024 Sum_probs=33.6
Q ss_pred HHHHHhc-----CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH-HHHHHHHHHHh
Q 012013 129 GWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL-AVQIQQESTKF 195 (473)
Q Consensus 129 ~i~~i~~-----~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~L-a~q~~~~~~~~ 195 (473)
.+..++. +.-+++.+++|+|||..++. ++..+... ....+.+.+++++.-...+ ..++.+.+.++
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~-la~~~~~~-~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQ-LSVNVQLP-PEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHH-HHHHTTSC-GGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHH-HHHHHhcc-cccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4555553 45678889999999975333 33322211 0001114567777643221 34444445544
No 153
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.55 E-value=1.1 Score=44.51 Aligned_cols=39 Identities=21% Similarity=0.075 Sum_probs=23.6
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
.|.-+++.|++|+|||..++..+....... +..|+++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-------g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-------NENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-------SCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEEC
Confidence 345678889999999975443333333221 335777663
No 154
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.51 E-value=0.19 Score=48.08 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=23.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
++-+++.+++|+|||..++. ++..+... +.+++++.-
T Consensus 61 G~iv~I~G~pGsGKTtLal~-la~~~~~~-------g~~vlyi~~ 97 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALH-AVANAQAA-------GGIAAFIDA 97 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHHhC-------CCeEEEEEC
Confidence 45688889999999976443 33333321 345677653
No 155
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=88.38 E-value=0.58 Score=46.36 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.4
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
.++++.+|+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36899999999999753
No 156
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.08 E-value=0.41 Score=39.05 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=16.8
Q ss_pred HhcCCcEEEEccCCCChhHH
Q 012013 133 ALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~ 152 (473)
.....++++.+|+|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44567899999999999964
No 157
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.82 E-value=0.41 Score=39.14 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=17.2
Q ss_pred HhcCCcEEEEccCCCChhHHh
Q 012013 133 ALKGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~~ 153 (473)
.....++++.+|+|+|||..+
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 345678999999999999753
No 158
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.71 E-value=4.4 Score=36.00 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=52.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc----c-cCCCCCCC
Q 012013 313 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----A-RGLDVKDV 382 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~----~-~Gidi~~v 382 (473)
+.++||.+++++-+..+++.++. .++.+..++|+.+..++...+.. ..+|+|+|. .+ . ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 44799999999988888776654 47889999999988766554432 478999994 22 1 24577788
Q ss_pred CEEEE
Q 012013 383 KYVIN 387 (473)
Q Consensus 383 ~~Vi~ 387 (473)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87773
No 159
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.53 E-value=0.32 Score=56.62 Aligned_cols=44 Identities=23% Similarity=0.171 Sum_probs=30.2
Q ss_pred HHHHhc------CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 012013 130 WPMALK------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (473)
Q Consensus 130 i~~i~~------~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 181 (473)
+..++. ++.+++.+|+|+|||..+...+...... +.+++++...
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~--------G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEEEcc
Confidence 555554 6789999999999998754443333222 5678888765
No 160
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.20 E-value=0.92 Score=44.88 Aligned_cols=38 Identities=26% Similarity=0.037 Sum_probs=23.0
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
+.-+++.|++|+|||..++-.+...+... +..|+++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-------g~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-------GVGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-------CCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEEC
Confidence 34578889999999965443333333221 345777654
No 161
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.15 E-value=0.36 Score=45.89 Aligned_cols=38 Identities=24% Similarity=0.140 Sum_probs=24.4
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
.+.-+++.|++|+|||..++- ++..+... +..|+|++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~-ia~~~a~~-------g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMN-MVLSALND-------DRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHH-HHHHHHHT-------TCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHHc-------CCeEEEEeC
Confidence 345678889999999975443 33333322 566788764
No 162
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=87.04 E-value=2.2 Score=40.81 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=53.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----ccCCCCCC
Q 012013 313 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKD 381 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~-----~~Gidi~~ 381 (473)
..++||.|+++.-+..+++.+... ++.+..++|+.+..+.... +..+..+|+|+|. .+ ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 348999999999999888877653 7889999999887665443 4456789999993 33 23456777
Q ss_pred CCEEE
Q 012013 382 VKYVI 386 (473)
Q Consensus 382 v~~Vi 386 (473)
+++||
T Consensus 153 ~~~vV 157 (391)
T 1xti_A 153 IKHFI 157 (391)
T ss_dssp CSEEE
T ss_pred cCEEE
Confidence 88777
No 163
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=86.93 E-value=1.4 Score=39.07 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=57.7
Q ss_pred chhhHHH-HHHHHHhHh---CCCeEEEEeCChHHHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 012013 296 ESQKYNK-LVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPI 366 (473)
Q Consensus 296 ~~~k~~~-l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~i 366 (473)
...|... ++-++.... ...++||.|++++-+..+++.++.. ++.+..++|+.+..++...+ ...+|
T Consensus 71 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~I 145 (230)
T 2oxc_A 71 GTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHI 145 (230)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSE
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCE
Confidence 3455543 444444432 2358999999999999988888653 67788999998876654433 35789
Q ss_pred EEEec-cc-----ccCCCCCCCCEEE
Q 012013 367 MTATD-VA-----ARGLDVKDVKYVI 386 (473)
Q Consensus 367 LvaT~-~~-----~~Gidi~~v~~Vi 386 (473)
+|+|. .+ ...+++.++++||
T Consensus 146 iv~Tp~~l~~~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 146 AVGSPGRIKQLIELDYLNPGSIRLFI 171 (230)
T ss_dssp EEECHHHHHHHHHTTSSCGGGCCEEE
T ss_pred EEECHHHHHHHHhcCCcccccCCEEE
Confidence 99994 22 1345666677666
No 164
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=86.89 E-value=2.7 Score=36.93 Aligned_cols=72 Identities=14% Similarity=0.281 Sum_probs=47.4
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----ccCCCCCCC
Q 012013 312 DGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 382 (473)
Q Consensus 312 ~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~-----~~Gidi~~v 382 (473)
.+.++||.+++++-+..+++.++. .+..+..++|+.+..++...+ . ...+|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 345799999999999999888876 467788899887665443332 2 3478999993 22 235667778
Q ss_pred CEEEE
Q 012013 383 KYVIN 387 (473)
Q Consensus 383 ~~Vi~ 387 (473)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87763
No 165
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.55 E-value=0.58 Score=46.04 Aligned_cols=55 Identities=25% Similarity=0.380 Sum_probs=34.8
Q ss_pred CCccCCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHH
Q 012013 95 PKPVKSFRDVGFPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~ 152 (473)
..|..+|++++-.+...+.|... .+..|.-++... +...+.+++.+|+|+|||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHH
Confidence 35778899998777777776532 111222222211 11246899999999999975
No 166
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.51 E-value=0.95 Score=43.01 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=13.4
Q ss_pred cEEEEccCCCChhHH
Q 012013 138 DLIGIAETGSGKTLA 152 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (473)
++++.+|+|+|||..
T Consensus 38 ~~ll~Gp~G~GKTtl 52 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTR 52 (354)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 489999999999985
No 167
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.50 E-value=0.75 Score=46.84 Aligned_cols=26 Identities=31% Similarity=0.213 Sum_probs=18.7
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHh
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~ 162 (473)
.+..+++.+|+|+|||+.+ -++....
T Consensus 107 ~g~~vll~Gp~GtGKTtla--r~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA--KSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH--HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH--HHHHHhc
Confidence 3667999999999999743 3444443
No 168
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=86.33 E-value=1.3 Score=36.79 Aligned_cols=73 Identities=14% Similarity=0.242 Sum_probs=51.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH---h-hcCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
..++||.|+++..+..+.+.+.+. ++.+..++|+.+....... + .....|+|+| +.+.. ..++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAAR-GIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTT-TCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCchhcC
Confidence 456999999999999999988875 4678888888765443222 2 2356899999 33333 4456778
Q ss_pred eEEeecc
Q 012013 248 TYLVLDE 254 (473)
Q Consensus 248 ~~vVvDE 254 (473)
++||.-+
T Consensus 105 ~~Vi~~~ 111 (163)
T 2hjv_A 105 SLVINYD 111 (163)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887643
No 169
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.26 E-value=0.8 Score=43.85 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=14.7
Q ss_pred cCCcEEEEccCCCChhHH
Q 012013 135 KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (473)
.+..+++++|||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 445678889999999974
No 170
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=86.20 E-value=3.6 Score=36.30 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=48.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccc----c--CCCCCC
Q 012013 313 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA----R--GLDVKD 381 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~~----~--Gidi~~ 381 (473)
+.++||.++++.-+..+++.++.. ++.+..++|+.+.......+ ...+|+|+|. .+. . .+++.+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 458999999999999888888653 47788899987655443322 4678999993 221 2 356667
Q ss_pred CCEEEE
Q 012013 382 VKYVIN 387 (473)
Q Consensus 382 v~~Vi~ 387 (473)
+++||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777663
No 171
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.09 E-value=0.57 Score=41.84 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=30.1
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
.+.-+++.+++|+|||..++. ++..+... +..++++.-. ....++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~-~~~~~~~~-------~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQ-FLWNGLKM-------GEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHH-HHHHHHHT-------TCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHH-HHHHHHhc-------CCeEEEEEcc-CCHHHHHHHHHHc
Confidence 456788899999999976433 33332221 3446666532 2334555555544
No 172
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=85.93 E-value=0.86 Score=42.68 Aligned_cols=41 Identities=17% Similarity=-0.030 Sum_probs=25.8
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~L 184 (473)
-+++.+|+|+|||...+- ++...... +.+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq-~~~~~~~~-----g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLT-MVSSYMRQ-----YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHH-HHHHHHHH-----CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHhc-----CCCceEEEEeccchh
Confidence 467889999999976443 44333321 114578888765444
No 173
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.90 E-value=19 Score=33.52 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=24.7
Q ss_pred ChHHHHHHHHccCccccceeEEeecchhhhhh---CCCHHHHHHHHh
Q 012013 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD---MGFEPQIKKILS 272 (473)
Q Consensus 229 Tp~~l~~~l~~~~~~l~~~~~vVvDEah~l~~---~~~~~~~~~i~~ 272 (473)
+...+.+.+..... .--+|||||+|.+.+ ..+...++.+..
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~ 166 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYD 166 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHH
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHH
Confidence 34455555543211 245899999999875 356666665544
No 174
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=85.75 E-value=1 Score=39.42 Aligned_cols=30 Identities=27% Similarity=0.175 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHhcCCcEEEEccCCCChhHH
Q 012013 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~ 152 (473)
+.-|..++..+..|.-+.+.+|.|||||+.
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 445677888888899999999999999984
No 175
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.75 E-value=0.82 Score=44.39 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=13.8
Q ss_pred CcEEE--EccCCCChhHHh
Q 012013 137 RDLIG--IAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~--~a~TGsGKT~~~ 153 (473)
..+++ .+|.|+|||..+
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 45777 899999999753
No 176
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=85.72 E-value=2.2 Score=36.45 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=43.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHh----hcCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
..++||.|+++.-+..+.+.+... ++.+..++|+.+.......+ .....|+|+| +.+.. ..++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chhhc-CCCcccC
Confidence 567999999999999998888774 46788888887654443322 2357899999 33333 3456677
Q ss_pred eEEee
Q 012013 248 TYLVL 252 (473)
Q Consensus 248 ~~vVv 252 (473)
++||.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77776
No 177
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.43 E-value=1.4 Score=37.99 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.9
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
+.+++.+|+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999753
No 178
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=85.24 E-value=0.98 Score=42.98 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=33.4
Q ss_pred HHHHHhc-----CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH-HHHHHHHHHHh
Q 012013 129 GWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL-AVQIQQESTKF 195 (473)
Q Consensus 129 ~i~~i~~-----~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~L-a~q~~~~~~~~ 195 (473)
.+..++. +.-+++.+++|+|||..++ .++..... +....+.+..++++.-...+ ..++.+.+.++
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~-~la~~~~~-~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSH-TLCVTAQL-PGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHH-HHHHHTTS-CBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHH-HHHHHHhc-ccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 4555554 3457888999999997533 33332211 11011124567777643321 23444444444
No 179
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=84.98 E-value=2.1 Score=36.00 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=50.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH---hh-cCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
..++||.|+++..+..+.+.+.+. ++.+..++|+.+....... +. ....|+|+| +.+. ...++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~-~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-----NVCA-RGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-----CSCC-TTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----cchh-cCCCcccC
Confidence 568999999999999988888764 4678888888765443322 22 357899999 3222 34567788
Q ss_pred eEEee
Q 012013 248 TYLVL 252 (473)
Q Consensus 248 ~~vVv 252 (473)
++||.
T Consensus 104 ~~Vi~ 108 (175)
T 2rb4_A 104 TIVVN 108 (175)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88884
No 180
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=84.49 E-value=1.5 Score=41.05 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCChhHHhH
Q 012013 136 GRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (473)
++++++.+|+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997543
No 181
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.34 E-value=1 Score=44.42 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=32.3
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~ 186 (473)
...++++.|+||||||.. +..++..+... +..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 347899999999999986 44445554442 567888889888754
No 182
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=84.23 E-value=3.6 Score=36.42 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=51.2
Q ss_pred chhhHHH-HHHHHHhHh---CCCeEEEEeCChHHHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 012013 296 ESQKYNK-LVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIM 367 (473)
Q Consensus 296 ~~~k~~~-l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iL 367 (473)
...|... ++-++.... ...++||.+++++-+..+++.++.. +..+..++|+.+... ..+.+..+..+|+
T Consensus 77 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Il 153 (237)
T 3bor_A 77 GTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIV 153 (237)
T ss_dssp SHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEE
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEE
Confidence 3455443 344444432 3458999999999999888888653 566777888765433 2344556778999
Q ss_pred EEec-----cccc-CCCCCCCCEEEE
Q 012013 368 TATD-----VAAR-GLDVKDVKYVIN 387 (473)
Q Consensus 368 vaT~-----~~~~-Gidi~~v~~Vi~ 387 (473)
|+|. .+.. .+++..+.+||.
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 154 VGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp EECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred EECHHHHHHHHHhCCcCcccCcEEEE
Confidence 9993 2222 356667777763
No 183
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=84.12 E-value=13 Score=32.98 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=49.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccc-----cCCCCCCCC
Q 012013 314 SRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA-----RGLDVKDVK 383 (473)
Q Consensus 314 ~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~~-----~Gidi~~v~ 383 (473)
.++||.|++++-+..+++.++. .++.+..++|+.+..+....+ ....+|+|+|. .+. ..+++..+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 4899999999999888877754 356788888887765443322 34678999993 332 235677788
Q ss_pred EEEE
Q 012013 384 YVIN 387 (473)
Q Consensus 384 ~Vi~ 387 (473)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7773
No 184
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.01 E-value=1.5 Score=42.86 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=18.2
Q ss_pred HHHHHHHHhc--CCcEEEEccCCCChhHH
Q 012013 126 QAQGWPMALK--GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 126 Q~~~i~~i~~--~~~~l~~a~TGsGKT~~ 152 (473)
+..++..++. +.-+++++|||||||+.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 4444544433 34578889999999984
No 185
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.01 E-value=2.3 Score=45.91 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=14.7
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
.++++.+|+|+|||..+
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 47999999999999753
No 186
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.85 E-value=1.1 Score=42.09 Aligned_cols=27 Identities=22% Similarity=-0.016 Sum_probs=18.9
Q ss_pred HHHHHHhc-----CCcEEEEccCCCChhHHhH
Q 012013 128 QGWPMALK-----GRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 128 ~~i~~i~~-----~~~~l~~a~TGsGKT~~~~ 154 (473)
..+..++. +.-+++.+++|+|||..++
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 34555553 3467888999999997543
No 187
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=83.63 E-value=1.8 Score=36.00 Aligned_cols=72 Identities=17% Similarity=0.293 Sum_probs=50.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH---h-hcCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
..++||.|+++.-+..+.+.+.+. ++.+..++++.+....... + .....|+|+| +.+.. ..++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLAR-GIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGTT-TCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chhhc-CCCcccC
Confidence 457999999999999999888875 4678888888765433222 2 2357899999 33333 3456678
Q ss_pred eEEeec
Q 012013 248 TYLVLD 253 (473)
Q Consensus 248 ~~vVvD 253 (473)
++||.-
T Consensus 100 ~~Vi~~ 105 (165)
T 1fuk_A 100 SLVINY 105 (165)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 887763
No 188
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=83.62 E-value=6.7 Score=33.53 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=50.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----ccCCCCCCCCE
Q 012013 313 GSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDVKY 384 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~-----~~Gidi~~v~~ 384 (473)
..++||.|+++.-+..+++.+... .+.+..++|+.+.......+. ...+|+|+|. .+ ...+++..+++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 457999999999999999988764 467888898877654433332 2578999994 22 12456777887
Q ss_pred EEE
Q 012013 385 VIN 387 (473)
Q Consensus 385 Vi~ 387 (473)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 189
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.52 E-value=3.7 Score=35.22 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=49.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc----c-cCCCCCC
Q 012013 313 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----A-RGLDVKD 381 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~----~-~Gidi~~ 381 (473)
..++||.++++.-+..+++.+... +..+..++|+.+..+.... + ....+|+|+|. .+ . ..+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 347999999999998888877542 5778889999876544322 2 35678999994 22 2 2346667
Q ss_pred CCEEE
Q 012013 382 VKYVI 386 (473)
Q Consensus 382 v~~Vi 386 (473)
+++||
T Consensus 147 ~~~lV 151 (206)
T 1vec_A 147 VQMIV 151 (206)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77776
No 190
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=83.42 E-value=1.9 Score=37.71 Aligned_cols=71 Identities=20% Similarity=0.311 Sum_probs=50.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHh---h-cCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL---Q-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+...+...+ . ....|+|+| +.+.. ..++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAAR-GLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTC-SSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhhc-CCCCccC
Confidence 456999999999999999888875 36788899887654443322 2 347899999 43333 4456778
Q ss_pred eEEee
Q 012013 248 TYLVL 252 (473)
Q Consensus 248 ~~vVv 252 (473)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88774
No 191
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=83.12 E-value=2.1 Score=33.96 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=38.3
Q ss_pred HHHHHHHHhHhCC-CeEEEEe-CChHHHHHHHHHHHhCCCCeEEecCCCCH
Q 012013 301 NKLVKLLEDIMDG-SRILIFM-DTKKGCDQITRQLRMDGWPALSIHGDKSQ 349 (473)
Q Consensus 301 ~~l~~~l~~~~~~-~~~lVf~-~~~~~~~~l~~~L~~~~~~~~~ihg~~~~ 349 (473)
..+...+..+..+ .+++|+| .+-..+..++..|+..|+++..+.|++..
T Consensus 76 ~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 76 KDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 3444555555566 7999999 57778889999999999999999998754
No 192
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=82.72 E-value=5.2 Score=39.16 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=58.9
Q ss_pred chhhHHHHHHHHHhH--hCCCeEEEEeCChHHHHHHHHHHHhC-CC---CeEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 012013 296 ESQKYNKLVKLLEDI--MDGSRILIFMDTKKGCDQITRQLRMD-GW---PALSIHGDKSQAERDWVLSEFKAGKSPIMTA 369 (473)
Q Consensus 296 ~~~k~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~-~~---~~~~ihg~~~~~~r~~~~~~f~~g~~~iLva 369 (473)
...|.-.....+... ....++||.|+++.-+..+++.+.+. +. .+..+||+....++..... ..+|+|+
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~ 107 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVA 107 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEe
Confidence 344544444333332 24679999999999999888888754 44 7899999998877655443 4679999
Q ss_pred e-ccccc-----CCCCCCCCEEE
Q 012013 370 T-DVAAR-----GLDVKDVKYVI 386 (473)
Q Consensus 370 T-~~~~~-----Gidi~~v~~Vi 386 (473)
| +.+.. -+....+++||
T Consensus 108 T~~~l~~~~~~~~~~~~~~~~vI 130 (494)
T 1wp9_A 108 TPQTIENDLLAGRISLEDVSLIV 130 (494)
T ss_dssp CHHHHHHHHHTTSCCTTSCSEEE
T ss_pred cHHHHHHHHhcCCcchhhceEEE
Confidence 9 44332 45666777777
No 193
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.64 E-value=1.4 Score=42.69 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=31.9
Q ss_pred CccCCcccCCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHH
Q 012013 96 KPVKSFRDVGFPDYVMQEISKAG---FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~ 152 (473)
.|-.+|++.+=-+...+.|.+.= +..|--++.-. +..-+.+++.+|+|+|||+.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHH
Confidence 35678999876666666655321 11111111111 12347899999999999975
No 194
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=82.23 E-value=1.2 Score=44.77 Aligned_cols=38 Identities=21% Similarity=0.090 Sum_probs=25.2
Q ss_pred HHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEccCCCChhHH
Q 012013 113 EISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 113 ~l~~~~~~~~~~~Q~~~i~~-i~~~~~~l~~a~TGsGKT~~ 152 (473)
.+.+.|. +++.+...+.. +..+..+++++|||||||+.
T Consensus 238 ~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 238 DLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3444442 34545444444 45678899999999999974
No 195
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=82.20 E-value=12 Score=33.67 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=50.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccc--cCCCCCC
Q 012013 313 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAA--RGLDVKD 381 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-----~~~--~Gidi~~ 381 (473)
+.++||.+++++-+..+++.+++ .+..+..++|+.........+ ..+ .+|+|+|. .+. ..+++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 45799999999999988888765 356778888988766544333 233 78999993 111 2467778
Q ss_pred CCEEEE
Q 012013 382 VKYVIN 387 (473)
Q Consensus 382 v~~Vi~ 387 (473)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887773
No 196
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=82.07 E-value=1.4 Score=33.84 Aligned_cols=46 Identities=7% Similarity=0.053 Sum_probs=36.8
Q ss_pred HHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCH
Q 012013 304 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQ 349 (473)
Q Consensus 304 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~ 349 (473)
.+.+..+..+.+++|||.+-..+...+..|...|+++..+.|++..
T Consensus 46 ~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 46 REKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp HHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred HHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 3344444456789999999888999999999999999999998643
No 197
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=82.05 E-value=2.6 Score=35.39 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=49.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH---h-hcCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
..++||.|+++..+..+.+.+.+. ++.+..++|+.+....... + .....|+|+|. .+. ...++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG-RGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCS-TTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chh-cCcchhhC
Confidence 456999999999999999988875 4678888888765443222 2 23578999992 222 24456777
Q ss_pred eEEee
Q 012013 248 TYLVL 252 (473)
Q Consensus 248 ~~vVv 252 (473)
++||.
T Consensus 101 ~~Vi~ 105 (172)
T 1t5i_A 101 NIAFN 105 (172)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77775
No 198
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=81.89 E-value=3.9 Score=45.17 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=61.3
Q ss_pred hhhHHHHHHHHHhH-hCCCeEEEEeCChHHHHHHHHHHHh----CCC----CeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 012013 297 SQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRM----DGW----PALSIHGDKSQAERDWVLSEFKAGKSPIM 367 (473)
Q Consensus 297 ~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~----~~~----~~~~ihg~~~~~~r~~~~~~f~~g~~~iL 367 (473)
..|...++-++... ..+.++||.++++.-+..+++.++. .++ .+..+||+.+..++....+.+.+ .+|+
T Consensus 82 SGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~Il 159 (1054)
T 1gku_B 82 VGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIV 159 (1054)
T ss_dssp SCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEE
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEE
Confidence 34443333333333 2455899999999999888887754 356 78999999999888777777777 8999
Q ss_pred EEec-ccccCCC-CCCCCEEE
Q 012013 368 TATD-VAARGLD-VKDVKYVI 386 (473)
Q Consensus 368 vaT~-~~~~Gid-i~~v~~Vi 386 (473)
|+|. .+..-+. +..+++||
T Consensus 160 V~TP~~L~~~l~~L~~l~~lV 180 (1054)
T 1gku_B 160 ITTTQFLSKHYRELGHFDFIF 180 (1054)
T ss_dssp EEEHHHHHHCSTTSCCCSEEE
T ss_pred EEcHHHHHHHHHHhccCCEEE
Confidence 9994 3333332 55777776
No 199
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.72 E-value=1 Score=44.26 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
-+.+++.+|+|+|||+.
T Consensus 215 prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999985
No 200
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.61 E-value=1.3 Score=43.69 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=33.2
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHH-HHHHHH--HhcCCcEEEEccCCCChhHH
Q 012013 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQ-AQGWPM--ALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~i~~--i~~~~~~l~~a~TGsGKT~~ 152 (473)
.|-.+|++.+=-+.+.+.|.+.=. .|.. .+.+.. +..-+.+|+.+|+|+|||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHH
Confidence 466789998777777776654311 0110 111211 12347899999999999975
No 201
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=80.81 E-value=12 Score=28.62 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=45.3
Q ss_pred HHHHHHhHhCCCeEEEEeC------ChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 012013 303 LVKLLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 368 (473)
Q Consensus 303 l~~~l~~~~~~~~~lVf~~------~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLv 368 (473)
+.+.++......+++||.. .-..|..+.+.|...++....+.=......+..+.+......++.++
T Consensus 7 ~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~if 78 (109)
T 3ipz_A 7 LKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLY 78 (109)
T ss_dssp HHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEE
T ss_pred HHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 4455666677789999998 48899999999999998877765544555555555443333344333
No 202
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=80.75 E-value=4.2 Score=37.84 Aligned_cols=17 Identities=18% Similarity=-0.089 Sum_probs=14.0
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
.+++.+|.|+|||..+.
T Consensus 20 ~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 20 SILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999997543
No 203
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=80.66 E-value=5.3 Score=38.51 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=52.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH---h-hcCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
+.++||.|+++..+..+++.+.+. ++.+..++++......... + .....|+||| +.+.. ..++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHT-TSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhc-CCCcccC
Confidence 678999999999999999888875 4678888888765443322 2 2357899999 44554 4567788
Q ss_pred eEEee
Q 012013 248 TYLVL 252 (473)
Q Consensus 248 ~~vVv 252 (473)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88875
No 204
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.30 E-value=0.92 Score=41.61 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=31.0
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHH-HHHHHHH--HhcCCcEEEEccCCCChhHH
Q 012013 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPI-QAQGWPM--ALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~-Q~~~i~~--i~~~~~~l~~a~TGsGKT~~ 152 (473)
.|...|+++.-.+..++.+...-. .+. ..+.+.. +...+.+++.+|+|+|||..
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 344568887666666666543210 000 0111111 13456799999999999975
No 205
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=79.46 E-value=1.2 Score=42.64 Aligned_cols=20 Identities=40% Similarity=0.416 Sum_probs=17.5
Q ss_pred HHhcCCcEEEEccCCCChhH
Q 012013 132 MALKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 132 ~i~~~~~~l~~a~TGsGKT~ 151 (473)
.+..|..+++++|||||||+
T Consensus 171 ~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHH
T ss_pred HHhcCCEEEEECCCCCCHHH
Confidence 35578899999999999997
No 206
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=79.18 E-value=1.9 Score=41.65 Aligned_cols=41 Identities=24% Similarity=0.474 Sum_probs=27.8
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~ 183 (473)
.+.+++++++||+|||+..-. ++..+... +.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~~-------~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYMQ-------GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHTT-------TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHHC-------CCEEEEEeCCcC
Confidence 567899999999999975333 33333322 566788877654
No 207
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=78.79 E-value=1.4 Score=38.10 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.4
Q ss_pred cCCcEEEEccCCCChhHH
Q 012013 135 KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (473)
.++-+++++|+|+|||+.
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999984
No 208
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=78.76 E-value=1.3 Score=37.48 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCChhHH
Q 012013 135 KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (473)
.++-+++++|+|+|||+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456788899999999974
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.68 E-value=1.6 Score=42.83 Aligned_cols=54 Identities=30% Similarity=0.370 Sum_probs=30.0
Q ss_pred CccCCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhcCCcEEEEccCCCChhHH
Q 012013 96 KPVKSFRDVGFPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~ 152 (473)
.|-.+|++.+=-+...+.+... .+..|--++... +...+.+++.+|+|+|||+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHH
Confidence 4556788886555555555421 011111111111 12246799999999999975
No 210
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=78.46 E-value=13 Score=28.49 Aligned_cols=66 Identities=14% Similarity=0.032 Sum_probs=44.8
Q ss_pred HHHHHHhHhCCCeEEEEe------CChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 012013 303 LVKLLEDIMDGSRILIFM------DTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 368 (473)
Q Consensus 303 l~~~l~~~~~~~~~lVf~------~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLv 368 (473)
+.+.++......+++||. ++-..|..+...|...++....+.=..++..+..+.+......++.++
T Consensus 5 ~~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 5 LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp HHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence 345566666778999999 467889999999999998877765555565555554433333344443
No 211
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=78.12 E-value=1 Score=40.27 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=29.2
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
|.-+++.|++|+|||..++-.+...+... +..+++++-. +-..++.+.+..+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHHHc
Confidence 45688899999999965433333333321 3446666532 2344555555443
No 212
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.02 E-value=2.8 Score=36.59 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=51.6
Q ss_pred CchhhHHH-HHHHHHhHh---CCCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 012013 295 SESQKYNK-LVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPI 366 (473)
Q Consensus 295 ~~~~k~~~-l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~i 366 (473)
....|... ++.++.... ...++||.++++.-+..+++.+.. .+..+..++|+.+..+.... +. ..+|
T Consensus 60 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~i 134 (224)
T 1qde_A 60 SGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQI 134 (224)
T ss_dssp TTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSE
T ss_pred CCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCE
Confidence 34455544 444454432 344899999999999888887764 36778889998765544332 22 3789
Q ss_pred EEEec-cc-----ccCCCCCCCCEEE
Q 012013 367 MTATD-VA-----ARGLDVKDVKYVI 386 (473)
Q Consensus 367 LvaT~-~~-----~~Gidi~~v~~Vi 386 (473)
+|+|. .+ ...+++..+.+||
T Consensus 135 iv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 135 VVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp EEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEECHHHHHHHHHhCCcchhhCcEEE
Confidence 99994 22 2355667777776
No 213
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.48 E-value=0.91 Score=42.25 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=30.3
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHH-HHHHHH--HhcCCcEEEEccCCCChhHHh
Q 012013 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQ-AQGWPM--ALKGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~i~~--i~~~~~~l~~a~TGsGKT~~~ 153 (473)
|..+|+++.-.+.+.+.+...-. .|.. .+.+.. +...+.+++.+|+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 45678887666666665543200 0000 001111 234567999999999999853
No 214
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=77.47 E-value=4.1 Score=41.05 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=46.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-cccc----cC-C-CCCC
Q 012013 313 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAA----RG-L-DVKD 381 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT-~~~~----~G-i-di~~ 381 (473)
..++||.|+++.-+..+.+.++.. ++.+..+||+.+...+...+. ...+|+|+| ..+. .+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999888887777653 889999999987655433222 136799999 3333 22 3 5667
Q ss_pred CCEEEE
Q 012013 382 VKYVIN 387 (473)
Q Consensus 382 v~~Vi~ 387 (473)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787773
No 215
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=77.21 E-value=4.1 Score=38.83 Aligned_cols=19 Identities=42% Similarity=0.513 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCChhHHh
Q 012013 135 KGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (473)
....+++.+|+|+|||+.+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3468999999999999853
No 216
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=77.09 E-value=3.2 Score=38.53 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=51.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHh----hcCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
..++||.|+++.-+..+.+.+.+. ++.+..++|+.+...+...+ ....+|+||| +.+.. ..++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~-Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAAR-GLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTC-STTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhc-Cccccce
Confidence 456999999999988888877664 47788999987765543332 2357899999 44333 4456778
Q ss_pred eEEeecc
Q 012013 248 TYLVLDE 254 (473)
Q Consensus 248 ~~vVvDE 254 (473)
++||.=+
T Consensus 98 ~~VI~~d 104 (300)
T 3i32_A 98 DLVVHYR 104 (300)
T ss_dssp SEEEESS
T ss_pred eEEEEcC
Confidence 8877533
No 217
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.63 E-value=1.8 Score=42.22 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
.+.+++.+|+|+|||+.
T Consensus 216 prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CSEEEEESSTTTTHHHH
T ss_pred CCCCceECCCCchHHHH
Confidence 46799999999999985
No 218
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=76.55 E-value=2.5 Score=39.58 Aligned_cols=51 Identities=12% Similarity=-0.023 Sum_probs=29.4
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 194 (473)
.|.-+++.|++|+|||..++- ++..+..+ +..+++++-- .-..|+...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~-ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALK-QAKNMSDN-------DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHH-HHHHHHTT-------TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHHc-------CCeEEEEECC-CCHHHHHHHHHH
Confidence 455688889999999965433 33333321 3567777642 233444444443
No 219
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=76.24 E-value=2.7 Score=38.95 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCChhHHhH
Q 012013 135 KGRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~ 154 (473)
.++.+++++++|+|||+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35567888999999998643
No 220
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.17 E-value=0.76 Score=42.22 Aligned_cols=53 Identities=21% Similarity=0.368 Sum_probs=26.1
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHH-HHHHHHH--hcCCcEEEEccCCCChhHH
Q 012013 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQ-AQGWPMA--LKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~i~~i--~~~~~~l~~a~TGsGKT~~ 152 (473)
|-.+|++++-.+.+.+.+...- ..|+. .+++..+ .-.+.+++.+|+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 4567888876677766665421 11221 1222221 1124589999999999974
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.16 E-value=4.4 Score=36.34 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
.+.+++.+|+|+|||+.
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 35689999999999975
No 222
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=76.05 E-value=3.1 Score=46.57 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=26.1
Q ss_pred EEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 012013 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (473)
Q Consensus 140 l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~ 182 (473)
+|.|..|||||.+.+--+...+...+ .+..+|+|||..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~-----~~~~il~lVP~q 42 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP-----FGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT-----TSSCEEEECCGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC-----CCCcEEEEecCc
Confidence 67899999999885544444333321 246799999975
No 223
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=75.70 E-value=1.6 Score=37.56 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCChhHHh
Q 012013 135 KGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (473)
.++.+++++++|||||+.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4678899999999999853
No 224
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=75.45 E-value=1.4 Score=41.67 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=19.7
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHHH
Q 012013 133 ALKGRDLIGIAETGSGKTLAYLLPAIVH 160 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~~~l~~l~~ 160 (473)
+..++.+++++|||||||+ ++-++..
T Consensus 168 i~~g~~v~i~G~~GsGKTT--ll~~l~g 193 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT--YIKSIME 193 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH--HHHHGGG
T ss_pred ccCCCEEEEECCCCCCHHH--HHHHHhC
Confidence 4568899999999999997 3444433
No 225
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=75.34 E-value=1.7 Score=38.04 Aligned_cols=88 Identities=17% Similarity=0.154 Sum_probs=53.9
Q ss_pred CchhhHHH-HHHHHHhHh---CCCeEEEEeCChHHHHHHHHHHHhC--------CCCeEEecCCCCHHHHHHHHHHHhcC
Q 012013 295 SESQKYNK-LVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMD--------GWPALSIHGDKSQAERDWVLSEFKAG 362 (473)
Q Consensus 295 ~~~~k~~~-l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~--------~~~~~~ihg~~~~~~r~~~~~~f~~g 362 (473)
....|... ++-++.... ...++||.+++++-+..+++.+++. ++.+..++|+.+..+... .+ ..
T Consensus 50 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~ 125 (219)
T 1q0u_A 50 TGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NV 125 (219)
T ss_dssp SSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SS
T ss_pred CCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CC
Confidence 34455543 334444433 2348999999999988888876542 577888888875433211 11 23
Q ss_pred CCcEEEEec-cc----cc-CCCCCCCCEEE
Q 012013 363 KSPIMTATD-VA----AR-GLDVKDVKYVI 386 (473)
Q Consensus 363 ~~~iLvaT~-~~----~~-Gidi~~v~~Vi 386 (473)
..+|+|+|. .+ .. .+++..+++||
T Consensus 126 ~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 155 (219)
T 1q0u_A 126 QPHIVIGTPGRINDFIREQALDVHTAHILV 155 (219)
T ss_dssp CCSEEEECHHHHHHHHHTTCCCGGGCCEEE
T ss_pred CCCEEEeCHHHHHHHHHcCCCCcCcceEEE
Confidence 578999993 22 22 34566677766
No 226
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=75.09 E-value=2.1 Score=37.62 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=15.8
Q ss_pred HhcCCcEEEEccCCCChhHH
Q 012013 133 ALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~ 152 (473)
+..|+-+.+++|+|+|||+.
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 44677889999999999973
No 227
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=75.00 E-value=7.5 Score=27.94 Aligned_cols=45 Identities=9% Similarity=0.175 Sum_probs=33.0
Q ss_pred HHHHHHhH--hCCCeEEEEeCChHHHHHHHHHHHhCCCC-eEEecCCCC
Q 012013 303 LVKLLEDI--MDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 348 (473)
Q Consensus 303 l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~ihg~~~ 348 (473)
+.+.+... ..+.+++|+|.+-..+...+..|...|+. +..+ |++.
T Consensus 29 l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 29 VKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp HHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred HHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 33444444 45568999999988899999999999986 4455 6643
No 228
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.87 E-value=11 Score=33.55 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
.+.+++.+|+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457899999999999753
No 229
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=74.65 E-value=2.3 Score=38.42 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCCChhHH
Q 012013 134 LKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~ 152 (473)
.....+++.+|+|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3467899999999999974
No 230
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=74.56 E-value=17 Score=27.32 Aligned_cols=65 Identities=14% Similarity=0.071 Sum_probs=43.3
Q ss_pred HHHHHhHhCCCeEEEEe------CChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 012013 304 VKLLEDIMDGSRILIFM------DTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 368 (473)
Q Consensus 304 ~~~l~~~~~~~~~lVf~------~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLv 368 (473)
.+.+.......+++||. +.-..|..+...|...++.+..+.-+.++..+..+.+.+....++.++
T Consensus 7 ~~~~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 7 EERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp HHHHHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 33444445556899998 466789999999998888877776666666666655555444444443
No 231
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=74.43 E-value=2 Score=36.95 Aligned_cols=18 Identities=39% Similarity=0.368 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCChhHH
Q 012013 135 KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (473)
.|.-+.+.+|+|||||+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 566778899999999984
No 232
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=74.37 E-value=4.6 Score=37.82 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=29.6
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-----hcCCcEEEEccCCCChhHH
Q 012013 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMA-----LKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i-----~~~~~~l~~a~TGsGKT~~ 152 (473)
|..+|+++.-.+.+.+.|...-. .|.+ .+.+ ...+.+++.+|+|+|||+.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 45678888766666666543200 0000 0111 1236799999999999975
No 233
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=74.17 E-value=1.5 Score=36.89 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
++-+++++++|||||+++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 356788999999999853
No 234
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.14 E-value=1.7 Score=41.11 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=14.4
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
+-++|++|||+|||..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 457888999999997533
No 235
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=73.97 E-value=14 Score=35.98 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=50.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc----cc-CCCCCCCC
Q 012013 314 SRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----AR-GLDVKDVK 383 (473)
Q Consensus 314 ~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~----~~-Gidi~~v~ 383 (473)
.++||.+++++-+..+++.+++ .++.+..++|+.+..++...+ ....+|+|+|. .+ .+ -+++..++
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~ 205 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDTR 205 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTCC
T ss_pred ccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccCC
Confidence 4899999999999998888765 356788899998876554332 24678999993 22 22 35677788
Q ss_pred EEE
Q 012013 384 YVI 386 (473)
Q Consensus 384 ~Vi 386 (473)
+||
T Consensus 206 ~lV 208 (434)
T 2db3_A 206 FVV 208 (434)
T ss_dssp EEE
T ss_pred eEE
Confidence 777
No 236
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=73.97 E-value=1.6 Score=41.97 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=16.2
Q ss_pred HhcCCcEEEEccCCCChhHH
Q 012013 133 ALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~ 152 (473)
+..+..+++++|||||||+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34566788999999999984
No 237
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=73.91 E-value=1.6 Score=39.18 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=29.4
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh--cCCcEEEEccCCCChhHH
Q 012013 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~--~~~~~l~~a~TGsGKT~~ 152 (473)
.|..+|+++.-.+.....+...-.. . -...++..+- -.+.+++.+|+|+|||+.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 3456788876666665555432110 0 0012222211 124589999999999974
No 238
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=73.78 E-value=4.8 Score=37.63 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=30.7
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-----hcCCcEEEEccCCCChhHHh
Q 012013 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMA-----LKGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i-----~~~~~~l~~a~TGsGKT~~~ 153 (473)
.|...|+++.-.+.+.+.+...-. .|. ..+.+ ...+.+++.+|+|+|||+.+
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 345678888767777766653310 000 00111 12356999999999999853
No 239
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=73.57 E-value=13 Score=34.07 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
...+++.+|+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999753
No 240
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=73.55 E-value=3.4 Score=31.49 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=35.6
Q ss_pred HHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCC-eEEecCCCCH
Q 012013 305 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKSQ 349 (473)
Q Consensus 305 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~ihg~~~~ 349 (473)
+.+..+..+.+++|+|.+-..+...+..|...|+. +..+.|++..
T Consensus 50 ~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 50 AFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp HHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred HHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 34444455678999999988899999999999995 7788888643
No 241
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=73.47 E-value=11 Score=35.75 Aligned_cols=86 Identities=19% Similarity=0.165 Sum_probs=56.9
Q ss_pred chhhHHH-HHHHHHhHh---CCCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 012013 296 ESQKYNK-LVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 367 (473)
Q Consensus 296 ~~~k~~~-l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iL 367 (473)
...|... ++-++.... ...++||.|+++.-+..+++.+.. .++.+..++|+.+..+....+. ..+|+
T Consensus 68 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~ 142 (394)
T 1fuu_A 68 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIV 142 (394)
T ss_dssp SHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEE
T ss_pred CChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEE
Confidence 4455543 334444332 345899999999999888887754 4678899999988766554443 46799
Q ss_pred EEec-cc-----ccCCCCCCCCEEE
Q 012013 368 TATD-VA-----ARGLDVKDVKYVI 386 (473)
Q Consensus 368 vaT~-~~-----~~Gidi~~v~~Vi 386 (473)
|+|. .+ ...+++..+++||
T Consensus 143 v~T~~~l~~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 143 VGTPGRVFDNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp EECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EECHHHHHHHHHhCCcchhhCcEEE
Confidence 9993 22 1234556677766
No 242
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=73.46 E-value=15 Score=37.16 Aligned_cols=76 Identities=11% Similarity=0.089 Sum_probs=54.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHh----hcCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
+.++||.|+++.-+..+++.+.+... .++.+..++++.........+ .....|+||| +.+.. ..++.++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~~-GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chhhc-CCCcccC
Confidence 66899999999999999999987642 246788888887654433222 2357899999 44443 4567778
Q ss_pred eEEeecc
Q 012013 248 TYLVLDE 254 (473)
Q Consensus 248 ~~vVvDE 254 (473)
++||.-.
T Consensus 412 ~~VI~~~ 418 (563)
T 3i5x_A 412 HEVLQIG 418 (563)
T ss_dssp CEEEEES
T ss_pred CEEEEEC
Confidence 8887544
No 243
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=73.34 E-value=16 Score=27.49 Aligned_cols=51 Identities=18% Similarity=0.323 Sum_probs=42.6
Q ss_pred EEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 012013 316 ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 366 (473)
Q Consensus 316 ~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~i 366 (473)
.+||....+-...+...++..|..+..++++.....|.+-++.|...-.+|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 578888888888899999999999999999999888888888887654443
No 244
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=73.30 E-value=2 Score=37.32 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCCChhHH
Q 012013 135 KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (473)
.++-+++++|+|+|||+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456688899999999984
No 245
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=73.29 E-value=1.7 Score=40.66 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=13.6
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
+-+++++|||+|||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34678899999999753
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=73.22 E-value=2.3 Score=36.88 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=19.0
Q ss_pred HHhcCCcEEEEccCCCChhHHhHHHHHHHH
Q 012013 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHV 161 (473)
Q Consensus 132 ~i~~~~~~l~~a~TGsGKT~~~~l~~l~~~ 161 (473)
.+..|+-+.+.+|+|||||+. +-++.-+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL--l~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV--VRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH--HHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 566788889999999999983 3444443
No 247
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=73.03 E-value=2.5 Score=35.97 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.5
Q ss_pred CcEEEEccCCCChhHH
Q 012013 137 RDLIGIAETGSGKTLA 152 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (473)
+-+++.+|+|+|||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999984
No 248
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=72.81 E-value=1.9 Score=36.36 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=16.9
Q ss_pred hcCCcEEEEccCCCChhHHhH
Q 012013 134 LKGRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~ 154 (473)
...+.+++.+++|||||++.-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999998533
No 249
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=72.44 E-value=3.1 Score=36.09 Aligned_cols=20 Identities=30% Similarity=0.089 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCChhHHhH
Q 012013 135 KGRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~ 154 (473)
.+.-+++.+++|+|||+.+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35667889999999997543
No 250
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=72.40 E-value=2.2 Score=36.07 Aligned_cols=19 Identities=26% Similarity=0.148 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCChhHHhH
Q 012013 136 GRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (473)
.+.+++++++|||||+++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4578899999999998543
No 251
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=72.36 E-value=2.6 Score=35.84 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHhcC-C-cEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 012013 123 TPIQAQGWPMALKG-R-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (473)
Q Consensus 123 ~~~Q~~~i~~i~~~-~-~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~ 188 (473)
.+-|..++..++.. + -.++.+.-|++||...+.-++.....+ |..|.+|+|+..-+...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~-------Gr~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ-------GREVQIIAADRRSQMNM 96 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT-------TCCEEEECSTTHHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc-------CeEEEEEcCchHHHHHH
Confidence 35688888887643 3 456679999999987544444443433 78899999997665443
No 252
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=72.31 E-value=3.7 Score=36.29 Aligned_cols=20 Identities=40% Similarity=0.370 Sum_probs=15.4
Q ss_pred cEEEEccCCCChhHHhHHHH
Q 012013 138 DLIGIAETGSGKTLAYLLPA 157 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~ 157 (473)
++++.++.|+|||..++--+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 57888999999998744333
No 253
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=72.05 E-value=1.9 Score=37.38 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
++-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45688999999999964
No 254
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=71.94 E-value=3.6 Score=38.31 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
+.-+.+++|+|||||+. +..+..+..
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 45677889999999984 444444443
No 255
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=71.93 E-value=1.6 Score=50.18 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=52.6
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccch
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (473)
+-+.+.+|.|||||+.+ +++++..... +..++++.+-.+|.... +++++-...
T Consensus 1432 ~~iei~g~~~sGkttl~-~~~~a~~~~~-------g~~~~~i~~e~~~~~~~---~~~~Gv~~~---------------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLT-LQVIAAAQRE-------GKTCAFIDAEHALDPIY---ARKLGVDID---------------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHH-HHHHHHHHHT-------TCCEEEECTTSCCCHHH---HHHTTCCGG----------------
T ss_pred CEEEEEcCCCCCHHHHH-HHHHHHHHhc-------CCeEEEEecCCCCCHHH---HHHcCCCHH----------------
Confidence 56788899999999874 4555544442 66788888866665443 555542211
Q ss_pred HHhhcCCcEEEeCh---HHHHHHHHccCccccceeEEeecchhhhh
Q 012013 217 RDLQKGVEIVIATP---GRLIDMLESHNTNLRRVTYLVLDEADRML 259 (473)
Q Consensus 217 ~~~~~~~~Iiv~Tp---~~l~~~l~~~~~~l~~~~~vVvDEah~l~ 259 (473)
+++++-| +..+..+..- ..-..+++||||.+-.+.
T Consensus 1485 -------~l~~~~p~~~e~~l~~~~~~-~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1485 -------NLLCSQPDTGEQALEICDAL-ARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp -------GCEEECCSSHHHHHHHHHHH-HHHTCCSEEEESCSTTCC
T ss_pred -------HeEEeCCCcHHHHHHHHHHH-HHcCCCCEEEEccHHhCC
Confidence 3566666 3333222211 111247899999987654
No 256
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=71.70 E-value=2.2 Score=42.83 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCcEEEEccCCCChhHH
Q 012013 127 AQGWPMALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 127 ~~~i~~i~~~~~~l~~a~TGsGKT~~ 152 (473)
..++..+..+.++++.+|+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 34445566788999999999999974
No 257
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=71.66 E-value=1.7 Score=36.98 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=15.6
Q ss_pred hcCCcEEEEccCCCChhHH
Q 012013 134 LKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~ 152 (473)
..+.-+++++|+|||||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3566788899999999974
No 258
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=71.62 E-value=2.6 Score=37.10 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=15.6
Q ss_pred HhcCCcEEEEccCCCChhHH
Q 012013 133 ALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~ 152 (473)
+..|+-+++++|.|+|||+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 45677788999999999983
No 259
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=71.55 E-value=2.2 Score=36.84 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=16.7
Q ss_pred HhcCCcEEEEccCCCChhHH
Q 012013 133 ALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~ 152 (473)
+..++-+++++|+|||||+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 44567889999999999974
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=71.47 E-value=2.3 Score=36.61 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=15.7
Q ss_pred hcCCcEEEEccCCCChhHH
Q 012013 134 LKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~ 152 (473)
..+.-+++++|+|||||+.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4566788899999999974
No 261
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=71.13 E-value=5.7 Score=48.08 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHCCCCCCCHHHH----HHHHHHhcCCcEEEEccCCCChhHHhH
Q 012013 106 FPDYVMQEISKAGFFEPTPIQA----QGWPMALKGRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~----~~i~~i~~~~~~l~~a~TGsGKT~~~~ 154 (473)
+.+.+.+.+.+.++ .+.+.+. +....+..+..+++++|||||||.++-
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34456666667766 4666653 223344557789999999999998754
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=71.09 E-value=1.8 Score=35.93 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=13.1
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
-+++++++|||||+.+
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999853
No 263
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=71.04 E-value=3.8 Score=37.73 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=16.7
Q ss_pred HhcCCcEEEEccCCCChhHHh
Q 012013 133 ALKGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~~ 153 (473)
+..|.-+++.+++|+|||+.+
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHH
Confidence 345677888999999999753
No 264
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=71.03 E-value=6.5 Score=37.73 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=51.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH---hh-cCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
..++||.|+++.-+..+++.+.+. ++.+..++++......... +. ....|+|+| +.+.. ..++..+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCAR-GIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTS-SCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Ccccc-CCCccCC
Confidence 468999999999999999988876 3667888888765443322 22 357899999 33333 4567788
Q ss_pred eEEee
Q 012013 248 TYLVL 252 (473)
Q Consensus 248 ~~vVv 252 (473)
++||.
T Consensus 336 ~~Vi~ 340 (412)
T 3fht_A 336 SVVIN 340 (412)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88884
No 265
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=70.95 E-value=2.5 Score=36.60 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCChhHH
Q 012013 135 KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (473)
.++-+++++|+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 567788999999999974
No 266
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=70.94 E-value=3.8 Score=36.37 Aligned_cols=90 Identities=24% Similarity=0.304 Sum_probs=54.6
Q ss_pred CchhhHHH-HHHHHHhHh----CCCeEEEEeCChHHHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCc
Q 012013 295 SESQKYNK-LVKLLEDIM----DGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSP 365 (473)
Q Consensus 295 ~~~~k~~~-l~~~l~~~~----~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~ 365 (473)
....|... ++-++.... .+.++||.+++++-+..+++.+... ++.+..++++..... ..........+
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 151 (245)
T 3dkp_A 75 TGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFD 151 (245)
T ss_dssp TTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCC
T ss_pred CCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCC
Confidence 34455433 444444443 2337999999999999988888653 566666665432211 11122345678
Q ss_pred EEEEec-cc----cc---CCCCCCCCEEEE
Q 012013 366 IMTATD-VA----AR---GLDVKDVKYVIN 387 (473)
Q Consensus 366 iLvaT~-~~----~~---Gidi~~v~~Vi~ 387 (473)
|+|+|. .+ .. .+++.++.+||.
T Consensus 152 I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 152 ILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp EEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 999992 22 12 477888887773
No 267
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=70.86 E-value=8.4 Score=34.93 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHH-HHHHHhcCC-----cEEEEccCCCChhHHhH
Q 012013 108 DYVMQEISKAGFFEPTPIQAQ-GWPMALKGR-----DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~Q~~-~i~~i~~~~-----~~l~~a~TGsGKT~~~~ 154 (473)
..+.+.|.-++| .|++.. ++..+++++ .+++.+|.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 467777777776 466633 344555543 47888999999997543
No 268
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=70.85 E-value=2.2 Score=39.73 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=13.2
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
-+++++|||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4677899999999753
No 269
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=70.61 E-value=18 Score=36.77 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=54.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH---h-hcCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
+.++||.|+|+.-+..+++.+.+... .++.+..++++......... + .....|+||| +.+.. ..++.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~~~-GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chhhc-CCCcccC
Confidence 56899999999999999999987642 24678888888765443222 2 2357899999 44333 4567778
Q ss_pred eEEeecch
Q 012013 248 TYLVLDEA 255 (473)
Q Consensus 248 ~~vVvDEa 255 (473)
++||.-..
T Consensus 361 ~~VI~~~~ 368 (579)
T 3sqw_A 361 HEVLQIGV 368 (579)
T ss_dssp CEEEEESC
T ss_pred CEEEEcCC
Confidence 88886553
No 270
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=70.58 E-value=2.2 Score=39.04 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.8
Q ss_pred CcEEEEccCCCChhHH
Q 012013 137 RDLIGIAETGSGKTLA 152 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (473)
+.+++.+|+|+|||+.
T Consensus 74 ~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcChHHHH
Confidence 3589999999999974
No 271
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=70.37 E-value=3.4 Score=34.35 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=17.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHH
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHV 161 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~ 161 (473)
+..+++.++.|||||+. .-++...
T Consensus 4 ~~~i~l~G~~GsGKSTl--~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI--GRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCeEEEECCCCCCHHHH--HHHHHHH
Confidence 45688999999999984 3344443
No 272
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=70.26 E-value=14 Score=38.34 Aligned_cols=77 Identities=14% Similarity=0.271 Sum_probs=55.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH---hh-cCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
+.++||.|+|+..+..+.+.+.+. ++.+..++++......... +. ...+|+|+| +.+. ..+++..+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT-----~~l~-~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLLR-EGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES-----CCCS-TTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec-----chhh-CCcccCCC
Confidence 568999999999999999888876 3677778876654333222 22 357899999 3333 34567789
Q ss_pred eEEeecchhhh
Q 012013 248 TYLVLDEADRM 258 (473)
Q Consensus 248 ~~vVvDEah~l 258 (473)
++||+-|++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999888754
No 273
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=70.25 E-value=2.3 Score=38.31 Aligned_cols=15 Identities=33% Similarity=0.087 Sum_probs=12.7
Q ss_pred EEEEccCCCChhHHh
Q 012013 139 LIGIAETGSGKTLAY 153 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~ 153 (473)
+++++|||||||+.+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 678899999999753
No 274
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=70.23 E-value=26 Score=27.25 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=39.2
Q ss_pred HHHHHHhHhCCCeEEEEeC------ChHHHHHHHHHHHhCCCC---eEEecCCCCHHHHHHHHHH
Q 012013 303 LVKLLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWP---ALSIHGDKSQAERDWVLSE 358 (473)
Q Consensus 303 l~~~l~~~~~~~~~lVf~~------~~~~~~~l~~~L~~~~~~---~~~ihg~~~~~~r~~~~~~ 358 (473)
+.+.++......+++||.. .-..|..+.+.|...++. +..+.=......+..+.+.
T Consensus 5 ~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~ 69 (121)
T 3gx8_A 5 IRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEF 69 (121)
T ss_dssp HHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHH
Confidence 3455566666789999988 478999999999988887 5555545555555554443
No 275
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=70.16 E-value=3 Score=39.80 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=18.3
Q ss_pred HHHHHhcCCcEEE--EccCCCChhHHh
Q 012013 129 GWPMALKGRDLIG--IAETGSGKTLAY 153 (473)
Q Consensus 129 ~i~~i~~~~~~l~--~a~TGsGKT~~~ 153 (473)
.+..+++|.++.| -++||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4556778876543 489999999863
No 276
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=70.01 E-value=3.1 Score=34.07 Aligned_cols=23 Identities=35% Similarity=0.265 Sum_probs=16.3
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHh
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~ 162 (473)
-.++.+|+|+|||.. +-++..++
T Consensus 25 ~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHH
Confidence 467889999999984 44444443
No 277
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=69.95 E-value=2.9 Score=35.20 Aligned_cols=23 Identities=30% Similarity=0.186 Sum_probs=16.7
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHh
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~ 162 (473)
-.++++|+|||||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 467889999999984 44555544
No 278
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=69.78 E-value=8.1 Score=43.27 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=41.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCC----CCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQP----FLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~----~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
...+|.|.-|||||.+...-++..+.... ....-....+|+|+=|+.-|.++.+++.+.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 35599999999999886555566555321 001122456999999999998888887754
No 279
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=69.77 E-value=3.7 Score=39.14 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=24.4
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
.++-+++.+++|+|||..++. ++..+... +.+++++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~-la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQ-VIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHH-HHHHHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHHHHC-------CCeEEEEeC
Confidence 346688889999999976443 33333322 345777765
No 280
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=69.71 E-value=23 Score=33.66 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=56.1
Q ss_pred chhhHHH-HHHHHHhHh---CCCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 012013 296 ESQKYNK-LVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 367 (473)
Q Consensus 296 ~~~k~~~-l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iL 367 (473)
...|... ++-++.... ...++||.|+++.-+..+++.++. .++.+..++|+....+.... ..+..+|+
T Consensus 68 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Iv 143 (400)
T 1s2m_A 68 GTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHIL 143 (400)
T ss_dssp TSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEE
T ss_pred CcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEE
Confidence 3455543 333333332 344899999999998888877764 36778889998876543222 24577899
Q ss_pred EEec-c----c-ccCCCCCCCCEEE
Q 012013 368 TATD-V----A-ARGLDVKDVKYVI 386 (473)
Q Consensus 368 vaT~-~----~-~~Gidi~~v~~Vi 386 (473)
|+|. . + ....++.++++||
T Consensus 144 v~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 144 VGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp EECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred EEchHHHHHHHHhCCcccccCCEEE
Confidence 9993 2 2 2335677777777
No 281
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=69.58 E-value=4.5 Score=39.87 Aligned_cols=37 Identities=16% Similarity=0.070 Sum_probs=23.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
|.-+++.|++|+|||..++- ++..+..+ +..|++++-
T Consensus 197 G~liiIaG~pG~GKTtlal~-ia~~~a~~-------g~~vl~fSl 233 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALK-QAKNMSDN-------DDVVNLHSL 233 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHH-HHHHHHHT-------TCEEEEECS
T ss_pred CcEEEEEeCCCCChHHHHHH-HHHHHHHc-------CCEEEEEEC
Confidence 45578889999999975443 33333321 456888764
No 282
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=69.56 E-value=2.5 Score=39.69 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=18.1
Q ss_pred HHHhcCCcEEEEccCCCChhHH
Q 012013 131 PMALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 131 ~~i~~~~~~l~~a~TGsGKT~~ 152 (473)
..+..+.++++.+|+|+|||..
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHH
Confidence 3445678999999999999974
No 283
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=69.48 E-value=2.4 Score=33.39 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=34.4
Q ss_pred HHHHhHhCCCeEEEEeCChHH--HHHHHHHHHhCCCCeEEecCCCC
Q 012013 305 KLLEDIMDGSRILIFMDTKKG--CDQITRQLRMDGWPALSIHGDKS 348 (473)
Q Consensus 305 ~~l~~~~~~~~~lVf~~~~~~--~~~l~~~L~~~~~~~~~ihg~~~ 348 (473)
+.+..+..+.+++|+|.+-.. +..++..|...|+.+..+.|++.
T Consensus 63 ~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 63 TRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 334444456789999998776 78899999999999888888754
No 284
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=69.46 E-value=23 Score=27.47 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=42.1
Q ss_pred HHHHhHhCCCeEEEEeC------ChHHHHHHHHHHHhCCCC-eEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 012013 305 KLLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWP-ALSIHGDKSQAERDWVLSEFKAGKSPIMT 368 (473)
Q Consensus 305 ~~l~~~~~~~~~lVf~~------~~~~~~~l~~~L~~~~~~-~~~ihg~~~~~~r~~~~~~f~~g~~~iLv 368 (473)
+.++......+++||.. .-..|..+.+.|.+.+++ ...+.=+.....++.+.+......++.++
T Consensus 11 ~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~vf 81 (118)
T 2wem_A 11 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVY 81 (118)
T ss_dssp HHHHHHHHHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHhccCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeEE
Confidence 33444455578999988 588999999999999885 76666555666665554433333344433
No 285
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=69.00 E-value=2.5 Score=36.21 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.8
Q ss_pred CcEEEEccCCCChhHH
Q 012013 137 RDLIGIAETGSGKTLA 152 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (473)
+-+|++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999973
No 286
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=68.97 E-value=4.1 Score=36.14 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=16.9
Q ss_pred HhcCCcEEEEccCCCChhHHh
Q 012013 133 ALKGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~~ 153 (473)
+..|.-+.+.+|+|||||+.+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHH
Confidence 345677889999999999753
No 287
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=68.94 E-value=2.2 Score=36.06 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
+.-+++.+++|||||+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456788999999999853
No 288
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=68.91 E-value=3 Score=31.36 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=32.7
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCC
Q 012013 311 MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 348 (473)
Q Consensus 311 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~ 348 (473)
..+.+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 35678999999999999999999999998888888753
No 289
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=68.55 E-value=2.7 Score=38.84 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.7
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
.++++.+|+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999864
No 290
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=68.26 E-value=7.5 Score=39.02 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=48.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccccc----C-C-CCCC
Q 012013 313 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAAR----G-L-DVKD 381 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT-~~~~~----G-i-di~~ 381 (473)
..++||+|+++.-+..+.+.+.. .++.+..++|+.+...+...+. ...+|+|+| ..+.. + + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 56899999999988877777654 3889999999986554432222 136799999 33332 1 2 4556
Q ss_pred CCEEE
Q 012013 382 VKYVI 386 (473)
Q Consensus 382 v~~Vi 386 (473)
+++||
T Consensus 128 ~~~vV 132 (555)
T 3tbk_A 128 FTLMI 132 (555)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77766
No 291
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=68.05 E-value=3.5 Score=38.30 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCChhHH
Q 012013 135 KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (473)
....+++.+++|+|||+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 456899999999999975
No 292
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=68.05 E-value=28 Score=33.17 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=56.9
Q ss_pred CchhhHHH-HHHHHHhHh---CCCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 012013 295 SESQKYNK-LVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPI 366 (473)
Q Consensus 295 ~~~~k~~~-l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~i 366 (473)
....|... +.-++.... ...++||.++++.-+..+++.+.. .++.+..++|+....+....+. ...+|
T Consensus 83 TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i 158 (410)
T 2j0s_A 83 SGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHV 158 (410)
T ss_dssp TTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSE
T ss_pred CCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCE
Confidence 34455533 334444332 345899999999999988888764 3567888899887766544332 24579
Q ss_pred EEEec-----cccc-CCCCCCCCEEE
Q 012013 367 MTATD-----VAAR-GLDVKDVKYVI 386 (473)
Q Consensus 367 LvaT~-----~~~~-Gidi~~v~~Vi 386 (473)
+|+|. .+.. .++...+++||
T Consensus 159 vv~Tp~~l~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 159 VAGTPGRVFDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp EEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEcCHHHHHHHHHhCCccHhheeEEE
Confidence 99993 2222 45666677766
No 293
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=67.90 E-value=10 Score=36.23 Aligned_cols=18 Identities=44% Similarity=0.571 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
...+++.+|+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999753
No 294
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=67.84 E-value=12 Score=39.79 Aligned_cols=70 Identities=13% Similarity=0.197 Sum_probs=45.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccccc-----CC-CCCC
Q 012013 313 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAAR-----GL-DVKD 381 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT-~~~~~-----Gi-di~~ 381 (473)
..++||.|+++.-+..+.+.++.. ++.+..+||+.+...+...+. ...+|+|+| ..+.. -+ .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 568999999999888877777653 889999999987655433222 257899999 33321 12 4556
Q ss_pred CCEEE
Q 012013 382 VKYVI 386 (473)
Q Consensus 382 v~~Vi 386 (473)
+++||
T Consensus 372 ~~~iV 376 (797)
T 4a2q_A 372 FTLMI 376 (797)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 67766
No 295
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=67.83 E-value=1.8 Score=36.41 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCChhHHh
Q 012013 135 KGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (473)
.+.-+.+++|+|||||+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4556788999999999743
No 296
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=67.81 E-value=12 Score=35.45 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=52.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH---hh-cCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
..++||.|+++.-+..+++.+.+. ++.+..++++.+....... +. ....|+|+| +.+. ...++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITT-----NVLA-RGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC-----GGGS-SSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chhh-cCCCcccC
Confidence 568999999999999999988875 3567788887765433222 22 357899999 3333 34567889
Q ss_pred eEEeecch
Q 012013 248 TYLVLDEA 255 (473)
Q Consensus 248 ~~vVvDEa 255 (473)
++||.-+.
T Consensus 313 ~~Vi~~~~ 320 (395)
T 3pey_A 313 SMVVNYDL 320 (395)
T ss_dssp EEEEESSC
T ss_pred CEEEEcCC
Confidence 99887443
No 297
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=67.34 E-value=3.2 Score=35.97 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=13.6
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
+.-+.+.+|+|||||+.
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44567789999999974
No 298
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=67.26 E-value=3.6 Score=38.22 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHh
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVN 162 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~ 162 (473)
+.-+.+++|+|+|||+. +..+..+.
T Consensus 100 g~vi~lvG~nGsGKTTl--l~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTS--LGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHH--HHHHHHHH
Confidence 44577889999999984 33444433
No 299
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=67.21 E-value=2.9 Score=31.84 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=32.3
Q ss_pred HhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCC
Q 012013 310 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 347 (473)
Q Consensus 310 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~ 347 (473)
+..+.+++|+|.+-..+...+..|...|+.+..+.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 34567899999998888999999999999988888875
No 300
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=67.04 E-value=3.4 Score=34.98 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCChhHHh
Q 012013 135 KGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (473)
.+..+++++++|||||++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567899999999999853
No 301
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=67.02 E-value=22 Score=28.37 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=43.2
Q ss_pred HHHHHHhHhCCCeEEEEeC------ChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 012013 303 LVKLLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 368 (473)
Q Consensus 303 l~~~l~~~~~~~~~lVf~~------~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLv 368 (473)
+.+.++......+++||+. +...|..+...|...++.+..+.=..++..+..+.+......+++|+
T Consensus 24 ~~~~v~~~i~~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf 95 (135)
T 2wci_A 24 TIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLW 95 (135)
T ss_dssp HHHHHHHHHHHCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHHhccCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEE
Confidence 3334444444468999977 67889999999999998887776665666666555444333334333
No 302
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=66.98 E-value=18 Score=37.53 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=54.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHH---hh-cCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
+.++||.|+|+..+..+.+.+.+.+ +.+..++++......... +. ...+|+||| +.+.. .+++..+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l~~-GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHG----IRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLRE-GLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCCT-TCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC----CCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chhhc-CccCCCC
Confidence 5689999999999999998888763 667777876654333222 22 357899999 33333 4567789
Q ss_pred eEEeecchhhh
Q 012013 248 TYLVLDEADRM 258 (473)
Q Consensus 248 ~~vVvDEah~l 258 (473)
++||+=+++..
T Consensus 509 ~lVI~~d~d~~ 519 (664)
T 1c4o_A 509 SLVAILDADKE 519 (664)
T ss_dssp EEEEETTTTSC
T ss_pred CEEEEeCCccc
Confidence 99988777643
No 303
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=66.87 E-value=5 Score=37.33 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=13.6
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
+-+++++++|+|||+..
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35677899999999753
No 304
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=66.65 E-value=6.5 Score=29.82 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=33.1
Q ss_pred hHhCCCeEEEEeCChHHHHHHHHHHHhCCCC-eEEecCCCC
Q 012013 309 DIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 348 (473)
Q Consensus 309 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~ihg~~~ 348 (473)
.+..+.+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3445668999999988899999999999996 778888754
No 305
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=66.64 E-value=3.9 Score=34.63 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=12.7
Q ss_pred cEEEEccCCCChhHH
Q 012013 138 DLIGIAETGSGKTLA 152 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (473)
.+.+.+|.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999984
No 306
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=66.63 E-value=3 Score=39.10 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.0
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
.+++++|||||||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999997543
No 307
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=66.53 E-value=7.6 Score=38.12 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=44.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhh-cCCcEEEeChHHHHHHHHccCccccceeEE
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~v 250 (473)
+.++||.||+++-+..+++.+++. ++.+..++|. ........+. ...+|+||| +.+.. ..++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT-----~v~e~-GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILAT-----DIAEM-GANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEES-----SSTTC-CTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEEC-----Chhhe-eeccC-ceEE
Confidence 457999999999999999998876 4678888873 2323333333 357899999 44443 34566 7777
Q ss_pred e
Q 012013 251 V 251 (473)
Q Consensus 251 V 251 (473)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 308
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=66.49 E-value=6.5 Score=33.86 Aligned_cols=35 Identities=31% Similarity=0.236 Sum_probs=27.4
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 179 (473)
..+++..++|.|||.+++-.++..+.. +.+|+|+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~--------G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH--------GKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT--------TCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEE
Confidence 467788999999999977766666654 77888884
No 309
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=66.49 E-value=4.1 Score=34.98 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCChhHH
Q 012013 135 KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (473)
.+.-++++++.|||||+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356788899999999984
No 310
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=66.31 E-value=7.8 Score=38.24 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCChhHHhH
Q 012013 136 GRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (473)
.+.+++.+|+|+|||+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3579999999999998543
No 311
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=66.24 E-value=3.6 Score=38.26 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=19.3
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHh
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~~~~ 162 (473)
..|+-+.+++|+|||||+. +-+|..+.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTL--l~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSML--CNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHH--HHHHhhhc
Confidence 3577888999999999973 44444443
No 312
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=66.22 E-value=3.1 Score=31.44 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=32.5
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCC
Q 012013 311 MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 348 (473)
Q Consensus 311 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~ 348 (473)
..+.+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 34668999999988899999999999998888888753
No 313
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=66.20 E-value=3.3 Score=34.38 Aligned_cols=27 Identities=22% Similarity=0.146 Sum_probs=19.3
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHh
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~~~~ 162 (473)
..|.-+.+.+|.|+|||+ ++-++..+.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 355667888999999997 444555544
No 314
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=66.09 E-value=4.1 Score=38.24 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=17.6
Q ss_pred HHHHHhcCCcE--EEEccCCCChhHHh
Q 012013 129 GWPMALKGRDL--IGIAETGSGKTLAY 153 (473)
Q Consensus 129 ~i~~i~~~~~~--l~~a~TGsGKT~~~ 153 (473)
.+..++.|.++ ++-++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 34456678764 44599999999863
No 315
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=66.03 E-value=3.2 Score=38.12 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=28.9
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHH-HHHHHHH-hcCCcEEEEccCCCChhHHh
Q 012013 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQ-AQGWPMA-LKGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~i~~i-~~~~~~l~~a~TGsGKT~~~ 153 (473)
+...|+++.-.+...+.+...-. .|.. .+.+..+ ...+.+++.+|+|+|||+.+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 44567777556666665543210 0000 0000001 13568999999999999753
No 316
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=65.85 E-value=3 Score=37.20 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=17.8
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHH
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIV 159 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~ 159 (473)
..|.-+.+++|.|||||+ ++-++.
T Consensus 29 ~~Ge~~~iiG~nGsGKST--Ll~~l~ 52 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST--MLNIIG 52 (235)
T ss_dssp CTTCEEEEECSTTSSHHH--HHHHHT
T ss_pred cCCCEEEEECCCCCcHHH--HHHHHh
Confidence 356778889999999997 444443
No 317
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=65.81 E-value=6.2 Score=34.74 Aligned_cols=20 Identities=25% Similarity=0.104 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCChhHHhH
Q 012013 135 KGRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~ 154 (473)
.+.-+++.+|+|+|||..+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 45678889999999997543
No 318
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=65.79 E-value=4.4 Score=37.90 Aligned_cols=15 Identities=27% Similarity=0.144 Sum_probs=12.5
Q ss_pred cEEEEccCCCChhHH
Q 012013 138 DLIGIAETGSGKTLA 152 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (473)
-+++.++.|||||+.
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 367889999999973
No 319
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=65.63 E-value=3.5 Score=34.10 Aligned_cols=16 Identities=13% Similarity=-0.207 Sum_probs=13.3
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
-+++.++.|||||+++
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999853
No 320
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=65.63 E-value=33 Score=25.80 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=39.7
Q ss_pred HhCCCeEEEEeC------ChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 012013 310 IMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 367 (473)
Q Consensus 310 ~~~~~~~lVf~~------~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iL 367 (473)
.....+++||.. +-..|..+...|...++.+..+.=+.+...+..+.+......+++|
T Consensus 11 ~i~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i 74 (109)
T 1wik_A 11 LTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQL 74 (109)
T ss_dssp HHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred HhccCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 334567989977 4568999999999999988888777666666665554433333333
No 321
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=65.61 E-value=2.7 Score=35.09 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.1
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
-+++++++|||||+.+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3678899999999853
No 322
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=65.58 E-value=7.7 Score=37.98 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=38.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHh-hcCCcEEEeC
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIAT 229 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-~~~~~Iiv~T 229 (473)
+.++||+||++.-+..+++.+.+. ++++..++|.... .....+ ....+|+|||
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~-~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFE-SEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHH-HHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHH-HHHHhhcCCCCeEEEEC
Confidence 346999999999999999998886 4678888876322 222233 3457999999
No 323
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=69.13 E-value=1.3 Score=37.20 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=46.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHh---h-cCCcEEEeChHHHHHHHHccCccccce
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL---Q-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (473)
..++||.|+++..+..+.+.+.+. ++.+..++|+.+.......+ . ....|+|+| +.+.. ..++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAAR-GIDIPDV 99 (170)
Confidence 457999999999988888877764 46677788876554332222 2 246799998 33332 2345566
Q ss_pred eEEee
Q 012013 248 TYLVL 252 (473)
Q Consensus 248 ~~vVv 252 (473)
++||.
T Consensus 100 ~~Vi~ 104 (170)
T 2yjt_D 100 SHVFN 104 (170)
Confidence 66665
No 324
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=65.03 E-value=4.8 Score=38.37 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=24.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 181 (473)
+.-+++.+|+|+|||+. ++.++..+... +..++++...
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~~-------gg~VlyId~E 98 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQKM-------GGVAAFIDAE 98 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHhc-------CCeEEEEecc
Confidence 45678889999999975 34444443322 4457777654
No 325
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=65.03 E-value=4.4 Score=38.62 Aligned_cols=25 Identities=32% Similarity=0.314 Sum_probs=18.3
Q ss_pred HHHHHHhcCCcEEE--EccCCCChhHH
Q 012013 128 QGWPMALKGRDLIG--IAETGSGKTLA 152 (473)
Q Consensus 128 ~~i~~i~~~~~~l~--~a~TGsGKT~~ 152 (473)
..+..++.|.++.+ -++||||||.+
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceE
Confidence 34556678877543 48999999986
No 326
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=64.98 E-value=5.3 Score=38.25 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=24.0
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 181 (473)
+.-+++.+++|+|||..++ .++..+... +..++++..-
T Consensus 74 G~li~I~G~pGsGKTtlal-~la~~~~~~-------g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLAL-AIVAQAQKA-------GGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHH-HHHHHHHHT-------TCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHH-HHHHHHHHC-------CCeEEEEECC
Confidence 4567888999999997543 444443332 3457776643
No 327
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=64.95 E-value=8.8 Score=39.82 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=48.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhhcCCcEEEeChHHHHHHHHccCccccceeEEe
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLV 251 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~vV 251 (473)
..++||.++++.-++++++.+++. ++.+..++|+...... ...+.+|+||| +.+..+-. +. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerGID-Id-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTGYT-GD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHHCC-CC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHccCC-CC-CcEEE
Confidence 568999999999999999888774 4778889998765432 23456899999 44454432 43 77776
No 328
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=64.90 E-value=38 Score=24.69 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=52.0
Q ss_pred cCchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 012013 294 VSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 370 (473)
Q Consensus 294 ~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT 370 (473)
+.+++.+..-+.-+.+...-.++||..+.+.-...+.+.+.+.|+++..+-.+.+..+-++.-....+.-+.|--.|
T Consensus 32 vndsdelkkemkklaeeknfekiliisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrkvt 108 (134)
T 2lci_A 32 VNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVT 108 (134)
T ss_dssp ECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEEC
T ss_pred cCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecC
Confidence 34444444444445454455689999999999999889899999999988888777765554444444445444444
No 329
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=64.90 E-value=6.8 Score=32.86 Aligned_cols=15 Identities=27% Similarity=0.065 Sum_probs=12.4
Q ss_pred cEEEEccCCCChhHH
Q 012013 138 DLIGIAETGSGKTLA 152 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (473)
-+.++++.|||||+.
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999974
No 330
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=64.48 E-value=4.6 Score=38.35 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=19.4
Q ss_pred HHHHHHhcCCcEEE--EccCCCChhHHh
Q 012013 128 QGWPMALKGRDLIG--IAETGSGKTLAY 153 (473)
Q Consensus 128 ~~i~~i~~~~~~l~--~a~TGsGKT~~~ 153 (473)
..+..+++|.++.+ -++||||||.+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 35667778887543 489999999874
No 331
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=64.43 E-value=5 Score=34.32 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=19.7
Q ss_pred ccceeEEeecchhhh--hhCCCHHHHHHHHh
Q 012013 244 LRRVTYLVLDEADRM--LDMGFEPQIKKILS 272 (473)
Q Consensus 244 l~~~~~vVvDEah~l--~~~~~~~~~~~i~~ 272 (473)
+.+.+++|+||+..+ .+..|...+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 456889999998776 33445555655554
No 332
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.43 E-value=5 Score=38.94 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=18.7
Q ss_pred HHHHHhcCCcEEE--EccCCCChhHHh
Q 012013 129 GWPMALKGRDLIG--IAETGSGKTLAY 153 (473)
Q Consensus 129 ~i~~i~~~~~~l~--~a~TGsGKT~~~ 153 (473)
.+..++.|.++.+ -++||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5566778887544 489999999874
No 333
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=64.32 E-value=9.5 Score=38.22 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
+.++++.++||||||.+
T Consensus 167 ~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVG 183 (512)
T ss_dssp SCSEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 35789999999999976
No 334
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=64.07 E-value=3.7 Score=39.07 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.8
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
+.+++.+|+|+|||..+
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 57999999999999853
No 335
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=63.96 E-value=8.6 Score=40.08 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=45.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhh-cCCcEEEeChHHHHHHHHccCccccceeEE
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~v 250 (473)
+.++||.||+++-+..+++.+.+. ++.+..++|.. .......+. ...+|+||| +.+..+ .++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaT-----dv~e~G-IDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITT-----DISEMG-ANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS-HHHHGGGGGTCCCSEEEEC-----GGGGTT-CCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH-HHHHHHHHHCCCceEEEEC-----chhhcc-eeeC-CcEE
Confidence 567999999999999888888775 46788888742 222222332 357899999 444443 3455 6666
Q ss_pred e
Q 012013 251 V 251 (473)
Q Consensus 251 V 251 (473)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 336
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=63.95 E-value=4.8 Score=37.89 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=19.1
Q ss_pred HHHHHHhcCCcEE--EEccCCCChhHHh
Q 012013 128 QGWPMALKGRDLI--GIAETGSGKTLAY 153 (473)
Q Consensus 128 ~~i~~i~~~~~~l--~~a~TGsGKT~~~ 153 (473)
..+..++.|.++. +-++||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4566677887653 4599999999763
No 337
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=63.93 E-value=6.1 Score=37.01 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.0
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
++-+++++++|+|||+..
T Consensus 105 ~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp CEEEEEESSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345677899999999864
No 338
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=63.91 E-value=4.8 Score=36.24 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCChhHHh
Q 012013 135 KGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (473)
.++.+++++++|||||+++
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4889999999999999853
No 339
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=63.89 E-value=5.3 Score=34.77 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.7
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
.+++.+|+|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999753
No 340
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=63.88 E-value=4.7 Score=38.59 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=16.7
Q ss_pred HHHHhcCCcEE--EEccCCCChhHH
Q 012013 130 WPMALKGRDLI--GIAETGSGKTLA 152 (473)
Q Consensus 130 i~~i~~~~~~l--~~a~TGsGKT~~ 152 (473)
+..++.|.++. +-++||||||.+
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEe
Confidence 34566787653 348999999986
No 341
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=63.82 E-value=3.7 Score=38.79 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=13.8
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
-++|++|||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 46788999999997643
No 342
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=63.75 E-value=4.8 Score=38.32 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=18.0
Q ss_pred HHHHHhcCCcEE--EEccCCCChhHHh
Q 012013 129 GWPMALKGRDLI--GIAETGSGKTLAY 153 (473)
Q Consensus 129 ~i~~i~~~~~~l--~~a~TGsGKT~~~ 153 (473)
.+..++.|.++. +-++||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 445567787653 3489999999863
No 343
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=63.72 E-value=9.7 Score=31.93 Aligned_cols=16 Identities=25% Similarity=0.117 Sum_probs=13.2
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
-+++.++.|||||+.+
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999853
No 344
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=63.70 E-value=4.9 Score=38.13 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=18.5
Q ss_pred HHHHHhcCCcEE--EEccCCCChhHHh
Q 012013 129 GWPMALKGRDLI--GIAETGSGKTLAY 153 (473)
Q Consensus 129 ~i~~i~~~~~~l--~~a~TGsGKT~~~ 153 (473)
.+..++.|.++. +-++||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 556677887653 4499999999863
No 345
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=63.67 E-value=4.8 Score=38.19 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=17.8
Q ss_pred HHHHHhcCCcE--EEEccCCCChhHHh
Q 012013 129 GWPMALKGRDL--IGIAETGSGKTLAY 153 (473)
Q Consensus 129 ~i~~i~~~~~~--l~~a~TGsGKT~~~ 153 (473)
.+..++.|.++ ++-++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34556678764 34499999999863
No 346
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=63.59 E-value=4.9 Score=38.15 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=17.0
Q ss_pred HHHHhcCCcE--EEEccCCCChhHHh
Q 012013 130 WPMALKGRDL--IGIAETGSGKTLAY 153 (473)
Q Consensus 130 i~~i~~~~~~--l~~a~TGsGKT~~~ 153 (473)
+..++.|.++ ++-++||||||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3446678764 34499999999863
No 347
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=63.50 E-value=4.9 Score=38.45 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=17.3
Q ss_pred HHHHHhcCCcEE--EEccCCCChhHH
Q 012013 129 GWPMALKGRDLI--GIAETGSGKTLA 152 (473)
Q Consensus 129 ~i~~i~~~~~~l--~~a~TGsGKT~~ 152 (473)
.+..++.|.++. +-++||||||.+
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 344567787643 349999999976
No 348
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=63.48 E-value=4.5 Score=38.58 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=17.2
Q ss_pred HHHHHhcCCcE--EEEccCCCChhHH
Q 012013 129 GWPMALKGRDL--IGIAETGSGKTLA 152 (473)
Q Consensus 129 ~i~~i~~~~~~--l~~a~TGsGKT~~ 152 (473)
.+..++.|.++ ++-++||||||.+
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 34456678764 3449999999976
No 349
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=63.46 E-value=4.9 Score=38.39 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=16.7
Q ss_pred HHHHhcCCcE--EEEccCCCChhHH
Q 012013 130 WPMALKGRDL--IGIAETGSGKTLA 152 (473)
Q Consensus 130 i~~i~~~~~~--l~~a~TGsGKT~~ 152 (473)
+..++.|.++ ++-++||||||.+
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceE
Confidence 3456678764 3449999999986
No 350
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=63.44 E-value=5 Score=38.93 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=16.9
Q ss_pred HHHHhcCCcE--EEEccCCCChhHHh
Q 012013 130 WPMALKGRDL--IGIAETGSGKTLAY 153 (473)
Q Consensus 130 i~~i~~~~~~--l~~a~TGsGKT~~~ 153 (473)
+..++.|.++ ++-++||||||.+.
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 3445677764 34489999999863
No 351
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=63.27 E-value=37 Score=32.23 Aligned_cols=88 Identities=17% Similarity=0.247 Sum_probs=56.9
Q ss_pred chhhHHH-HHHHHHhHh---CCCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 012013 296 ESQKYNK-LVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 367 (473)
Q Consensus 296 ~~~k~~~-l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iL 367 (473)
...|... +.-++.... ...++||.++++.-+..+++.++. .+..+..++|+...... ...+..+..+|+
T Consensus 87 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ii 163 (414)
T 3eiq_A 87 GTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHII 163 (414)
T ss_dssp CSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEE
T ss_pred CCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEE
Confidence 3445443 344444433 345899999999999888888765 35677777887765443 445566788999
Q ss_pred EEec-----ccc-cCCCCCCCCEEE
Q 012013 368 TATD-----VAA-RGLDVKDVKYVI 386 (473)
Q Consensus 368 vaT~-----~~~-~Gidi~~v~~Vi 386 (473)
|+|. .+. ..+++..+.+||
T Consensus 164 v~T~~~l~~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 164 VGTPGRVFDMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp EECHHHHHHHHHHTSSCSTTCCEEE
T ss_pred EECHHHHHHHHHcCCcccccCcEEE
Confidence 9993 222 234566677666
No 352
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=63.17 E-value=3.1 Score=35.06 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
+..+++.+++|||||+.+
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446788999999999853
No 353
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=63.09 E-value=4.9 Score=38.25 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=16.7
Q ss_pred HHHHhcCCcE--EEEccCCCChhHH
Q 012013 130 WPMALKGRDL--IGIAETGSGKTLA 152 (473)
Q Consensus 130 i~~i~~~~~~--l~~a~TGsGKT~~ 152 (473)
+..++.|.++ ++-++||||||.+
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceee
Confidence 3456678764 3448999999986
No 354
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=63.08 E-value=4.4 Score=34.78 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=15.7
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 012013 134 LKGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~ 153 (473)
..+.-+++.+++|||||+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34566788899999999853
No 355
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=63.07 E-value=3.8 Score=34.20 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
+..++++++.|||||+.
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45678899999999985
No 356
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=63.04 E-value=3.8 Score=37.81 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=14.0
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
+.+++.+|+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788899999999753
No 357
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=62.94 E-value=5 Score=38.20 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=17.0
Q ss_pred HHHHhcCCcE--EEEccCCCChhHHh
Q 012013 130 WPMALKGRDL--IGIAETGSGKTLAY 153 (473)
Q Consensus 130 i~~i~~~~~~--l~~a~TGsGKT~~~ 153 (473)
+..++.|.++ ++-++||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 3456677764 44599999999863
No 358
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=62.90 E-value=10 Score=36.38 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
.+.+++.+|+|+|||+.+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999753
No 359
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=62.89 E-value=4.7 Score=38.43 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.2
Q ss_pred CcEEEEccCCCChhHH
Q 012013 137 RDLIGIAETGSGKTLA 152 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (473)
.-+.+++|+|+|||+.
T Consensus 158 ~vi~lvG~nGsGKTTl 173 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTS 173 (359)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEEcCCCChHHHH
Confidence 3467889999999984
No 360
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=62.83 E-value=4.8 Score=38.10 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=17.1
Q ss_pred HHHHHhcCCcE--EEEccCCCChhHH
Q 012013 129 GWPMALKGRDL--IGIAETGSGKTLA 152 (473)
Q Consensus 129 ~i~~i~~~~~~--l~~a~TGsGKT~~ 152 (473)
.+..+++|.++ ++-++||||||.+
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 34455677764 4449999999986
No 361
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=62.70 E-value=28 Score=36.97 Aligned_cols=86 Identities=7% Similarity=0.006 Sum_probs=56.8
Q ss_pred CchhhH-HHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHH----HhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 012013 295 SESQKY-NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL----RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 369 (473)
Q Consensus 295 ~~~~k~-~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L----~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLva 369 (473)
..+.|. ..++-++.....+..++|.++|+.-|...++.+ +..++.+.++.|+++...|.... .++|+|+
T Consensus 96 TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvg 169 (853)
T 2fsf_A 96 TGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYG 169 (853)
T ss_dssp TTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEE
T ss_pred CCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEE
Confidence 334443 333444434445668999999999887766665 44689999999999976554432 3789999
Q ss_pred ecc-c-----ccC-------CCCCCCCEEE
Q 012013 370 TDV-A-----ARG-------LDVKDVKYVI 386 (473)
Q Consensus 370 T~~-~-----~~G-------idi~~v~~Vi 386 (473)
|.- + ..+ +....+.++|
T Consensus 170 Tpgrl~fDyLrd~~~~~~~~~~~~~l~~lV 199 (853)
T 2fsf_A 170 TNNEYGFDYLRDNMAFSPEERVQRKLHYAL 199 (853)
T ss_dssp EHHHHHHHHHHHTTCSSGGGCCCCSCCEEE
T ss_pred CCchhhHHHHHhhhhccHhHhcccCCcEEE
Confidence 952 2 222 4556777766
No 362
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=62.37 E-value=3.8 Score=36.56 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.5
Q ss_pred hcCCcEEEEccCCCChhH
Q 012013 134 LKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~ 151 (473)
..|.-+.+.+|.|||||+
T Consensus 29 ~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 456778899999999997
No 363
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=62.20 E-value=4.9 Score=37.80 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=13.9
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
+.-+.+++|+|+|||+.
T Consensus 129 g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44577889999999984
No 364
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=62.14 E-value=5.7 Score=37.65 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=17.5
Q ss_pred HHHHHhcCCcE--EEEccCCCChhHHh
Q 012013 129 GWPMALKGRDL--IGIAETGSGKTLAY 153 (473)
Q Consensus 129 ~i~~i~~~~~~--l~~a~TGsGKT~~~ 153 (473)
.+..+++|.++ +.-++||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 34456678765 34489999999863
No 365
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=61.77 E-value=18 Score=38.30 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=52.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHh-------ccCCCceEEEEEcCccCccchHHhh---------cCCcEEEeChHHHHH
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKF-------GASSKIKSTCIYGGVPKGPQVRDLQ---------KGVEIVIATPGRLID 235 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~-------~~~~~~~~~~~~gg~~~~~~~~~~~---------~~~~Iiv~Tp~~l~~ 235 (473)
...+||.+|++.-+..+++.+.+. ....++.+..++++.+...+...+. ....|+||| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 568999999999999988888752 1234678889999887655443332 235799999 4
Q ss_pred HHHccCccccceeEEee
Q 012013 236 MLESHNTNLRRVTYLVL 252 (473)
Q Consensus 236 ~l~~~~~~l~~~~~vVv 252 (473)
.+..+ .++..+.+||-
T Consensus 378 iae~G-idIp~v~~VId 393 (773)
T 2xau_A 378 IAETS-LTIDGIVYVVD 393 (773)
T ss_dssp HHHHT-CCCTTEEEEEE
T ss_pred HHHhC-cCcCCeEEEEe
Confidence 44443 45667887764
No 366
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=61.59 E-value=4.2 Score=39.37 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=13.5
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
-++|++|||+|||..+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 36778999999997643
No 367
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=61.57 E-value=4.7 Score=38.33 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
.+.+++.+|+|+|||+.+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999853
No 368
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=61.56 E-value=4.9 Score=38.53 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=16.4
Q ss_pred HHHHhcCCcE--EEEccCCCChhHH
Q 012013 130 WPMALKGRDL--IGIAETGSGKTLA 152 (473)
Q Consensus 130 i~~i~~~~~~--l~~a~TGsGKT~~ 152 (473)
+..++.|.++ ++-++||||||.+
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCccee
Confidence 3445677764 3449999999976
No 369
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=61.52 E-value=5.3 Score=34.54 Aligned_cols=24 Identities=33% Similarity=0.224 Sum_probs=17.1
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhc
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
-.++.+|+|+|||.. +-++..++.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 467889999999984 445555444
No 370
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=61.45 E-value=4.3 Score=35.56 Aligned_cols=19 Identities=32% Similarity=0.204 Sum_probs=16.1
Q ss_pred HhcCCcEEEEccCCCChhH
Q 012013 133 ALKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~ 151 (473)
+..|.-+.+.+|.|||||+
T Consensus 32 i~~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp EETTCCEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3457788899999999997
No 371
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=61.40 E-value=5.7 Score=34.41 Aligned_cols=30 Identities=17% Similarity=0.085 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHhcCCcEEEEccCCCChhHHh
Q 012013 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~ 153 (473)
++.++... .+..+.-+++.+++|||||+.+
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 44555543 3455667888999999999853
No 372
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=61.09 E-value=2.6 Score=37.21 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=12.4
Q ss_pred HhcCCcEEEEccCCCChhHH
Q 012013 133 ALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~ 152 (473)
+..|+-+.+.+|+|||||+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 44567788899999999984
No 373
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=60.92 E-value=9.5 Score=32.65 Aligned_cols=54 Identities=9% Similarity=0.184 Sum_probs=33.8
Q ss_pred CCeEEEEeCChHHHHH-HHHHHHh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 012013 313 GSRILIFMDTKKGCDQ-ITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 370 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~-l~~~L~~---~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT 370 (473)
..++||+|+++.-++. +.+.+.. .++.+..++|+.....+...+. ...+|+|+|
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T 139 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIIST 139 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEE
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEEC
Confidence 4689999999988777 5555443 3678888888765432221111 146799999
No 374
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=60.89 E-value=4.8 Score=38.49 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=18.4
Q ss_pred HHHHHhcCCcEEE--EccCCCChhHHh
Q 012013 129 GWPMALKGRDLIG--IAETGSGKTLAY 153 (473)
Q Consensus 129 ~i~~i~~~~~~l~--~a~TGsGKT~~~ 153 (473)
.+..++.|.++.+ -++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556778876543 489999999863
No 375
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=60.88 E-value=5.1 Score=38.34 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.3
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
-+++++|+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999853
No 376
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=60.87 E-value=5.6 Score=33.67 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCChhHHh
Q 012013 135 KGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (473)
.+.-+++.+++|||||+++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567888999999999853
No 377
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=60.85 E-value=7 Score=28.79 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=30.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCC
Q 012013 314 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 348 (473)
Q Consensus 314 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~ 348 (473)
.+++|+|.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988899999999999999778888764
No 378
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=60.84 E-value=4.9 Score=33.23 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=15.1
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
+++++.++.|||||+++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578899999999998643
No 379
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=60.84 E-value=15 Score=27.82 Aligned_cols=38 Identities=8% Similarity=0.238 Sum_probs=32.3
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCC
Q 012013 311 MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 348 (473)
Q Consensus 311 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~ 348 (473)
..+.+++|||.+-..+...+..|...|+....+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 45668999999988999999999999987677888864
No 380
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=60.70 E-value=4.8 Score=34.04 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=12.8
Q ss_pred cEEEEccCCCChhHH
Q 012013 138 DLIGIAETGSGKTLA 152 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (473)
-+++++|+|||||+.
T Consensus 4 ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 4 LYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 467889999999984
No 381
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=60.60 E-value=11 Score=36.97 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=45.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHh-hcCCcEEEeChHHHHHHHHccCccccceeEE
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~v 250 (473)
..++||.||++.-+.++++.+.+. ++.+..+++.... .....+ .....|+||| +.+..+ .++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT-----~v~~~G-iDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTT-----DISEMG-ANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEEC-----GGGGSS-CCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEEC-----CHHHhC-cCCCC-CEE
Confidence 346999999999999988888765 4667777776542 222223 2357899999 444543 34555 665
Q ss_pred e
Q 012013 251 V 251 (473)
Q Consensus 251 V 251 (473)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 382
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.39 E-value=5.9 Score=38.51 Aligned_cols=26 Identities=35% Similarity=0.368 Sum_probs=19.0
Q ss_pred HHHHHHhcCCcEEE--EccCCCChhHHh
Q 012013 128 QGWPMALKGRDLIG--IAETGSGKTLAY 153 (473)
Q Consensus 128 ~~i~~i~~~~~~l~--~a~TGsGKT~~~ 153 (473)
..+..++.|.++.+ -++||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35566778877543 489999999863
No 383
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=60.35 E-value=5.2 Score=38.33 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=15.8
Q ss_pred cEEEEccCCCChhHHhHHHHHHH
Q 012013 138 DLIGIAETGSGKTLAYLLPAIVH 160 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~ 160 (473)
-.++.++||+|||.. +-++..
T Consensus 27 l~vi~G~NGaGKT~i--leAI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSI--FEAVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHH--HHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHH
Confidence 467889999999984 445554
No 384
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=60.27 E-value=38 Score=35.96 Aligned_cols=77 Identities=9% Similarity=0.102 Sum_probs=53.8
Q ss_pred HHHHHhHhCCCeEEEEeCChHHHHHHHHHH----HhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----
Q 012013 304 VKLLEDIMDGSRILIFMDTKKGCDQITRQL----RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----- 373 (473)
Q Consensus 304 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L----~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~----- 373 (473)
+-++.....+..++|.++|+.-|...++.+ +..++.+.++.|+++..+|.... .++|+|+|+ -+
T Consensus 115 LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L 188 (844)
T 1tf5_A 115 LPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYL 188 (844)
T ss_dssp HHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHH
Confidence 333333345668999999999888777665 34689999999999987665432 368999994 22
Q ss_pred c-------cCCCCCCCCEEE
Q 012013 374 A-------RGLDVKDVKYVI 386 (473)
Q Consensus 374 ~-------~Gidi~~v~~Vi 386 (473)
. ..++...+.++|
T Consensus 189 ~D~m~~~~~~l~lr~~~~lV 208 (844)
T 1tf5_A 189 RDNMVLYKEQMVQRPLHFAV 208 (844)
T ss_dssp HHTTCSSGGGCCCCCCCEEE
T ss_pred HHhhhcchhhhcccCCCEEE
Confidence 1 235667777766
No 385
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=60.13 E-value=5.5 Score=36.70 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=14.0
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
.+++.+|+|+|||..+
T Consensus 49 ~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEESCSSSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 6899999999999854
No 386
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=60.11 E-value=13 Score=37.82 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=18.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHh
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHVN 162 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~~ 162 (473)
-++++.+.||||||.+ +-.++..+.
T Consensus 215 pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp CCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 4789999999999976 434444443
No 387
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=60.11 E-value=4.3 Score=35.96 Aligned_cols=18 Identities=39% Similarity=0.449 Sum_probs=15.5
Q ss_pred hcCCcEEEEccCCCChhH
Q 012013 134 LKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~ 151 (473)
..|.-+.+.+|.|||||+
T Consensus 32 ~~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp ETTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 457778899999999997
No 388
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=60.07 E-value=4.2 Score=35.85 Aligned_cols=18 Identities=39% Similarity=0.444 Sum_probs=15.1
Q ss_pred hcCCcEEEEccCCCChhH
Q 012013 134 LKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~ 151 (473)
..|.-+.+.+|.|||||+
T Consensus 28 ~~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKST 45 (224)
T ss_dssp ETTCEEEEEECTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 356678889999999997
No 389
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=60.06 E-value=3.9 Score=34.59 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=13.9
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
.-+++++++|||||+.+
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788899999999853
No 390
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=59.98 E-value=4.2 Score=37.23 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=17.8
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHH
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIV 159 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~ 159 (473)
..|.-+.+.+|.|||||+ ++-++.
T Consensus 32 ~~Ge~~~iiGpnGsGKST--Ll~~l~ 55 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKST--LFQNFN 55 (275)
T ss_dssp ETTSEEEEECCTTSSHHH--HHHHHT
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHH
Confidence 356778889999999997 444443
No 391
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=59.85 E-value=5.9 Score=37.98 Aligned_cols=24 Identities=38% Similarity=0.367 Sum_probs=17.8
Q ss_pred HHHHHhcCCcEEE--EccCCCChhHH
Q 012013 129 GWPMALKGRDLIG--IAETGSGKTLA 152 (473)
Q Consensus 129 ~i~~i~~~~~~l~--~a~TGsGKT~~ 152 (473)
.+..++.|.++.+ -++||||||.+
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 4556677876533 48999999976
No 392
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=59.82 E-value=15 Score=34.30 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=16.0
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhc
Q 012013 139 LIGIAETGSGKTLAYLLPAIVHVNA 163 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~~~~ 163 (473)
+.+.+|+|||||+. +-.+..++.
T Consensus 95 igI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEECCCCCCHHHH--HHHHHHHhc
Confidence 56679999999984 344555543
No 393
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=59.81 E-value=4.4 Score=36.70 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=16.0
Q ss_pred HhcCCcEEEEccCCCChhH
Q 012013 133 ALKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~ 151 (473)
+..|.-+.+.+|.|||||+
T Consensus 43 i~~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKST 61 (260)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 3457788899999999997
No 394
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=59.79 E-value=6.1 Score=38.02 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=17.1
Q ss_pred HHHHhcCCcE--EEEccCCCChhHHh
Q 012013 130 WPMALKGRDL--IGIAETGSGKTLAY 153 (473)
Q Consensus 130 i~~i~~~~~~--l~~a~TGsGKT~~~ 153 (473)
+..++.|.++ ++-++||||||.+.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3456677764 44489999999874
No 395
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=59.75 E-value=6.1 Score=38.82 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=17.1
Q ss_pred HHHHhcCCcE--EEEccCCCChhHHh
Q 012013 130 WPMALKGRDL--IGIAETGSGKTLAY 153 (473)
Q Consensus 130 i~~i~~~~~~--l~~a~TGsGKT~~~ 153 (473)
+..++.|.++ ++-++||||||.+.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445678764 33489999999863
No 396
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=59.75 E-value=22 Score=32.64 Aligned_cols=85 Identities=12% Similarity=0.032 Sum_probs=54.0
Q ss_pred chhhHH-HHHHHHHhHhC---CCeEEEEeCChHHHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 012013 296 ESQKYN-KLVKLLEDIMD---GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPI 366 (473)
Q Consensus 296 ~~~k~~-~l~~~l~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~r~~~~~~f~~g~~~i 366 (473)
...|.. .++-++..+.. ..++||.+++++-|..+++.++.. ++.+..++++....... ....+|
T Consensus 141 GsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~I 213 (300)
T 3fmo_B 141 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQI 213 (300)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSE
T ss_pred CCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCE
Confidence 344543 34455555433 226999999999999888777642 45677777765432211 345689
Q ss_pred EEEec-cc-----c-cCCCCCCCCEEEE
Q 012013 367 MTATD-VA-----A-RGLDVKDVKYVIN 387 (473)
Q Consensus 367 LvaT~-~~-----~-~Gidi~~v~~Vi~ 387 (473)
+|+|. .+ . ..+++..+.+||.
T Consensus 214 lV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 214 VIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp EEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred EEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 99994 22 1 3567778888773
No 397
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=59.67 E-value=5.7 Score=33.12 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=14.2
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
.+++.+++|||||+.+-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58889999999998543
No 398
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=59.62 E-value=4.4 Score=36.38 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.5
Q ss_pred hcCCcEEEEccCCCChhH
Q 012013 134 LKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~ 151 (473)
..|.-+.+.+|.|||||+
T Consensus 33 ~~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKST 50 (247)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 457778899999999997
No 399
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=59.59 E-value=9 Score=32.22 Aligned_cols=18 Identities=33% Similarity=0.204 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
+.-+++++++|||||+.+
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 446788899999999854
No 400
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=59.57 E-value=5.9 Score=34.23 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=13.7
Q ss_pred EEEEccCCCChhHHhHH
Q 012013 139 LIGIAETGSGKTLAYLL 155 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l 155 (473)
.++.++.|||||+.+..
T Consensus 8 ~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 57889999999986443
No 401
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=59.57 E-value=5.1 Score=34.35 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.3
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
.-++++++.|||||+.+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999853
No 402
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=59.39 E-value=3.9 Score=37.63 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=13.0
Q ss_pred cEEEEccCCCChhHH
Q 012013 138 DLIGIAETGSGKTLA 152 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (473)
-+++++|+|||||+.
T Consensus 35 livl~G~sGsGKSTl 49 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEECCTTSCTHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478889999999975
No 403
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=59.34 E-value=5.5 Score=34.34 Aligned_cols=17 Identities=29% Similarity=0.003 Sum_probs=13.5
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
+.-+.+.+|+|||||+.
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 34467789999999984
No 404
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=59.32 E-value=4.6 Score=38.85 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=16.4
Q ss_pred HHHhcCCcEE--EEccCCCChhHHh
Q 012013 131 PMALKGRDLI--GIAETGSGKTLAY 153 (473)
Q Consensus 131 ~~i~~~~~~l--~~a~TGsGKT~~~ 153 (473)
..++.|.++. +-++||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 3456777643 3499999999863
No 405
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=59.30 E-value=31 Score=31.61 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=49.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccc-----cCCCCCCC
Q 012013 313 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA-----RGLDVKDV 382 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~~-----~Gidi~~v 382 (473)
..++||.++++.-+..+++.+++ .+..+..++|+.+..+.... +. ..+|+|+|. .+. .-+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 56899999999999998888864 35778899999887654332 22 378999993 222 23455666
Q ss_pred CEEE
Q 012013 383 KYVI 386 (473)
Q Consensus 383 ~~Vi 386 (473)
++||
T Consensus 131 ~~iV 134 (337)
T 2z0m_A 131 EIVI 134 (337)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7666
No 406
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.27 E-value=7.5 Score=36.46 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=14.4
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
.++++.+|+|+|||..+
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999753
No 407
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=59.21 E-value=47 Score=30.77 Aligned_cols=87 Identities=23% Similarity=0.282 Sum_probs=56.2
Q ss_pred CchhhHHHHH-HHHHhHh--CCCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 012013 295 SESQKYNKLV-KLLEDIM--DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 367 (473)
Q Consensus 295 ~~~~k~~~l~-~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iL 367 (473)
....|..... -++.... ...++||.++++.-+..+++.+.. .++.+..++|+....+....+. ..+|+
T Consensus 53 TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~ii 127 (367)
T 1hv8_A 53 TGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIV 127 (367)
T ss_dssp SSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEE
T ss_pred CCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEE
Confidence 3455654433 3333322 245899999999998888888765 3677888999887665443332 57899
Q ss_pred EEec-ccc-----cCCCCCCCCEEE
Q 012013 368 TATD-VAA-----RGLDVKDVKYVI 386 (473)
Q Consensus 368 vaT~-~~~-----~Gidi~~v~~Vi 386 (473)
|+|. .+. ..+++..+++||
T Consensus 128 v~T~~~l~~~~~~~~~~~~~~~~iI 152 (367)
T 1hv8_A 128 VGTPGRILDHINRGTLNLKNVKYFI 152 (367)
T ss_dssp EECHHHHHHHHHTTCSCTTSCCEEE
T ss_pred EecHHHHHHHHHcCCcccccCCEEE
Confidence 9993 222 235566777766
No 408
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=59.21 E-value=4.8 Score=38.29 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
.+.+++.+|+|+|||+.+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999753
No 409
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=59.08 E-value=4.7 Score=34.05 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=14.3
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
.-+++.+++|||||+.+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457888999999998643
No 410
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=58.87 E-value=7 Score=38.33 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=14.5
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
..+++++++|+|||+.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 367888999999998643
No 411
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=58.33 E-value=14 Score=36.75 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=54.1
Q ss_pred chhhHHHHHHHHHhHh--CCCeEEEEeCChHHHHHHHHHHHhCC----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 012013 296 ESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDG----WPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 369 (473)
Q Consensus 296 ~~~k~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLva 369 (473)
...|....+..+.... ...++||.|+++.-+..+.+.++..+ ..+..++++.+..++ ..+..+|+|+
T Consensus 138 GsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~ 210 (510)
T 2oca_A 138 SAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVG 210 (510)
T ss_dssp TTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEE
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEE
Confidence 3455444333332221 23499999999999999999987642 357888888776543 4577899999
Q ss_pred e-cccccC--CCCCCCCEEE
Q 012013 370 T-DVAARG--LDVKDVKYVI 386 (473)
Q Consensus 370 T-~~~~~G--idi~~v~~Vi 386 (473)
| +.+..- ..+.++.+||
T Consensus 211 T~~~l~~~~~~~~~~~~liI 230 (510)
T 2oca_A 211 TWQTVVKQPKEWFSQFGMMM 230 (510)
T ss_dssp EHHHHTTSCGGGGGGEEEEE
T ss_pred eHHHHhhchhhhhhcCCEEE
Confidence 9 444333 3344555555
No 412
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=58.25 E-value=5.4 Score=31.56 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=33.0
Q ss_pred HhCCCeEEEEeCChHHHHHHHHHHHhCCCC-eEEecCCCCH
Q 012013 310 IMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKSQ 349 (473)
Q Consensus 310 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~ihg~~~~ 349 (473)
+..+.+++|||.+-..+...+..|...|+. +..+.|++..
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 345668999999988889999999999985 8888898643
No 413
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=58.24 E-value=4.7 Score=36.37 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=15.8
Q ss_pred HhcCCcEEEEccCCCChhH
Q 012013 133 ALKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~ 151 (473)
+..|.-+.+.+|.|||||+
T Consensus 30 i~~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKST 48 (257)
T ss_dssp EETTCEEEEECSTTSSHHH
T ss_pred EeCCCEEEEECCCCCCHHH
Confidence 3456778899999999997
No 414
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=58.15 E-value=4.8 Score=42.79 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=32.6
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhcCCcEEEEccCCCChhHH
Q 012013 96 KPVKSFRDVGFPDYVMQEISKAGFF-EPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~ 152 (473)
.|...|++++.-+.+.+.|...-.. ...|.+-..+ -+...+.+++.+|+|+|||+.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHH
Confidence 3556788888778887777653111 1111110000 011235799999999999974
No 415
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=58.09 E-value=5.4 Score=34.08 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCCChhHH
Q 012013 135 KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (473)
.+.-+++.++.|||||++
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 345678899999999985
No 416
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=57.99 E-value=4.9 Score=36.42 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.2
Q ss_pred hcCCcEEEEccCCCChhH
Q 012013 134 LKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~ 151 (473)
..|.-+.+.+|.|||||+
T Consensus 30 ~~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKST 47 (262)
T ss_dssp CTTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 356678889999999997
No 417
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=57.91 E-value=3.1 Score=37.56 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
.+.+++.+|+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456899999999999753
No 418
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=57.81 E-value=2.8 Score=43.92 Aligned_cols=69 Identities=12% Similarity=0.263 Sum_probs=45.8
Q ss_pred CeEEEEeCChHHHHHH-HHHHHhC---CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccccc-----------CC
Q 012013 314 SRILIFMDTKKGCDQI-TRQLRMD---GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAAR-----------GL 377 (473)
Q Consensus 314 ~~~lVf~~~~~~~~~l-~~~L~~~---~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT-~~~~~-----------Gi 377 (473)
.++||.+|++.-+..+ .+.|+.. ++.+..++|+.+..++...+. +..+|+|+| ..+.. .+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 6899999999988888 7777654 278999999986554333222 468899999 44432 24
Q ss_pred CCCCCCEEE
Q 012013 378 DVKDVKYVI 386 (473)
Q Consensus 378 di~~v~~Vi 386 (473)
.+..+++||
T Consensus 133 ~~~~~~lvV 141 (699)
T 4gl2_A 133 QLSDFSLII 141 (699)
T ss_dssp CGGGCSEEE
T ss_pred ecccCcEEE
Confidence 566777777
No 419
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=57.79 E-value=5.3 Score=36.33 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=18.7
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHHH
Q 012013 133 ALKGRDLIGIAETGSGKTLAYLLPAIVH 160 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~~~l~~l~~ 160 (473)
+..|.-+.+.+|.|||||+ ++-++.-
T Consensus 43 i~~Ge~~~l~G~NGsGKST--Llk~l~G 68 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKST--LSATLAG 68 (267)
T ss_dssp ECTTCEEEEECCTTSSHHH--HHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhC
Confidence 3456778899999999997 4444443
No 420
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=57.77 E-value=4.8 Score=36.57 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.3
Q ss_pred hcCCcEEEEccCCCChhH
Q 012013 134 LKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~ 151 (473)
..|.-+.+.+|.|||||+
T Consensus 35 ~~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKST 52 (266)
T ss_dssp ETTCEEEEECCTTSCHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 356778889999999997
No 421
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=57.56 E-value=4.3 Score=36.33 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=18.0
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHH
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIVH 160 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~~ 160 (473)
..|.-+.+.+|.|||||+ ++-++.-
T Consensus 26 ~~Ge~~~i~G~nGsGKST--Ll~~l~G 50 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKST--IFSLLER 50 (243)
T ss_dssp CTTEEEEEECCTTSSHHH--HHHHHTT
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhc
Confidence 356678889999999997 4444433
No 422
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=57.52 E-value=5.9 Score=37.25 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=14.2
Q ss_pred CcEEEEccCCCChhHH
Q 012013 137 RDLIGIAETGSGKTLA 152 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (473)
..+++.+|+|+|||+.
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5789999999999984
No 423
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=57.51 E-value=5 Score=35.79 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.3
Q ss_pred hcCCcEEEEccCCCChhH
Q 012013 134 LKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~ 151 (473)
..|.-+.+.+|.|||||+
T Consensus 30 ~~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTT 47 (240)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 356778889999999997
No 424
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=57.23 E-value=6.1 Score=34.84 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCChhHHhH
Q 012013 136 GRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (473)
...+++.+++|||||+++-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568889999999998543
No 425
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=57.21 E-value=5.2 Score=36.31 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=18.2
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHH
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIVH 160 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~~ 160 (473)
..|.-+.+.+|.|||||+ ++-++.-
T Consensus 48 ~~Gei~~liG~NGsGKST--Llk~l~G 72 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKST--FLRCLNL 72 (263)
T ss_dssp CTTCEEEEECCTTSSHHH--HHHHHTT
T ss_pred cCCCEEEEEcCCCCcHHH--HHHHHHc
Confidence 356778889999999997 4444433
No 426
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=57.03 E-value=6.1 Score=34.36 Aligned_cols=43 Identities=19% Similarity=0.107 Sum_probs=24.7
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcC----CcEEEEccCCCChhHHh
Q 012013 109 YVMQEISKAGFFEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~i~~~----~~~l~~a~TGsGKT~~~ 153 (473)
.+.+.|.-+++ ++..+ ...+..++.+ +.+++.+|.|+|||..+
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 45555553432 23333 3444444443 24788899999999753
No 427
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=57.00 E-value=10 Score=36.68 Aligned_cols=18 Identities=22% Similarity=0.106 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
+.-+++.+|+|+|||...
T Consensus 178 Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLC 195 (400)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEEcCCCCChHHHH
Confidence 456788899999999753
No 428
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=56.99 E-value=5.2 Score=36.10 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=15.3
Q ss_pred hcCCcEEEEccCCCChhH
Q 012013 134 LKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~ 151 (473)
..|.-+.+.+|.|||||+
T Consensus 39 ~~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp CTTCEEEEECCTTSSHHH
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 356778889999999997
No 429
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=56.98 E-value=5.5 Score=35.79 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=18.3
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHH
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIVH 160 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~~ 160 (473)
..|.-+.+.+|.|||||+ ++-++.-
T Consensus 27 ~~Ge~~~l~G~nGsGKST--Llk~l~G 51 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKST--LGKILAG 51 (250)
T ss_dssp ETTCEEEEECSTTSSHHH--HHHHHHT
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhC
Confidence 356778899999999997 4444443
No 430
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=56.84 E-value=5.3 Score=36.43 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=18.6
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHHH
Q 012013 133 ALKGRDLIGIAETGSGKTLAYLLPAIVH 160 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~~~l~~l~~ 160 (473)
+..|.-+.+.+|.|||||+ ++-++.-
T Consensus 42 i~~Ge~~~i~G~nGsGKST--Llk~l~G 67 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKST--VAALLQN 67 (271)
T ss_dssp ECTTCEEEEECSTTSSHHH--HHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHH--HHHHHhc
Confidence 3456778899999999997 4444433
No 431
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=56.65 E-value=7.1 Score=33.08 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCChhHHh
Q 012013 135 KGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (473)
...-+++.+++|||||+++
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456888999999999853
No 432
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=56.57 E-value=14 Score=40.85 Aligned_cols=81 Identities=17% Similarity=0.161 Sum_probs=55.8
Q ss_pred CchhhHHH-HHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe---
Q 012013 295 SESQKYNK-LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT--- 370 (473)
Q Consensus 295 ~~~~k~~~-l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT--- 370 (473)
....|... ++-++.....+.++||.+|++.-+...++.+....-.+..++|+.+ .++..+|+|+|
T Consensus 208 TGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~ 276 (1108)
T 3l9o_A 208 TSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEI 276 (1108)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHH
T ss_pred CCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHH
Confidence 34455433 3344444556779999999999999999999876558888999886 24568899999
Q ss_pred --cccccCC-CCCCCCEEE
Q 012013 371 --DVAARGL-DVKDVKYVI 386 (473)
Q Consensus 371 --~~~~~Gi-di~~v~~Vi 386 (473)
+.+..+- .+.++.+||
T Consensus 277 L~~~L~~~~~~l~~l~lVV 295 (1108)
T 3l9o_A 277 LRSMLYRGSEVMREVAWVI 295 (1108)
T ss_dssp HHHHHHHCSSHHHHEEEEE
T ss_pred HHHHHHcCccccccCCEEE
Confidence 3333332 244566666
No 433
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=56.37 E-value=6.9 Score=38.98 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=12.7
Q ss_pred cEEEEccCCCChhHH
Q 012013 138 DLIGIAETGSGKTLA 152 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (473)
-+.+++++|+|||+.
T Consensus 295 VI~LVGpNGSGKTTL 309 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT 309 (503)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCcccHHHH
Confidence 467789999999984
No 434
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=56.26 E-value=9.3 Score=38.39 Aligned_cols=17 Identities=35% Similarity=0.329 Sum_probs=14.7
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
+.+++.+|+|+|||..+
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57899999999999853
No 435
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=56.21 E-value=6.3 Score=34.12 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=13.7
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
.+++.++.|||||+++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998543
No 436
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=56.20 E-value=3.3 Score=35.75 Aligned_cols=19 Identities=32% Similarity=-0.024 Sum_probs=14.7
Q ss_pred hcCCcEEEEccCCCChhHH
Q 012013 134 LKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~ 152 (473)
..+.-+.+.+++|||||+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCCEEEEEEESTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3345577889999999974
No 437
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=55.93 E-value=5.5 Score=35.79 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.3
Q ss_pred hcCCcEEEEccCCCChhH
Q 012013 134 LKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~ 151 (473)
..|.-+.+.+|.|||||+
T Consensus 24 ~~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKST 41 (249)
T ss_dssp ETTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 356778899999999997
No 438
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=55.87 E-value=14 Score=36.55 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCChhHHhH
Q 012013 136 GRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (473)
..++++.+|+|+|||..+.
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3578999999999998643
No 439
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=55.83 E-value=5.5 Score=36.51 Aligned_cols=19 Identities=37% Similarity=0.407 Sum_probs=15.8
Q ss_pred HhcCCcEEEEccCCCChhH
Q 012013 133 ALKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~ 151 (473)
+..|.-+.+.+|.|||||+
T Consensus 44 i~~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTT 62 (279)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3456778899999999997
No 440
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=55.53 E-value=11 Score=34.74 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=13.3
Q ss_pred cEEEEccCCCChhHHhH
Q 012013 138 DLIGIAETGSGKTLAYL 154 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (473)
-+++++++|+|||+.+.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46677999999998543
No 441
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=55.48 E-value=6.6 Score=33.03 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.4
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
-+++.+++|||||+++
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999853
No 442
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=55.33 E-value=5.8 Score=36.02 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=15.2
Q ss_pred hcCCcEEEEccCCCChhH
Q 012013 134 LKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~ 151 (473)
..|.-+.+.+|.|||||+
T Consensus 31 ~~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKST 48 (266)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 356778889999999997
No 443
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=55.32 E-value=6.5 Score=34.24 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=13.8
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
..+.+.+++|||||+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999999853
No 444
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=55.19 E-value=6.7 Score=33.98 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=13.4
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
.+++.++.|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999854
No 445
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=55.19 E-value=7.5 Score=32.08 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=14.1
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
+.+++.+++|||||+++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35788999999999853
No 446
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=55.16 E-value=6.4 Score=40.43 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=13.4
Q ss_pred cEEEEccCCCChhH
Q 012013 138 DLIGIAETGSGKTL 151 (473)
Q Consensus 138 ~~l~~a~TGsGKT~ 151 (473)
++++.+|+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999996
No 447
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=55.13 E-value=9.8 Score=39.11 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=18.5
Q ss_pred HHHhcCCcEEEEccCCCChhHH
Q 012013 131 PMALKGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 131 ~~i~~~~~~l~~a~TGsGKT~~ 152 (473)
..+..+..+++.+|+|+|||+.
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHH
Confidence 3456788999999999999984
No 448
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=54.93 E-value=27 Score=30.72 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=45.8
Q ss_pred CchhhHHHHHHHHHhHhCCCeEEEEeCChHHHHHHHHHHHhCCCC-eEEecCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 012013 295 SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 370 (473)
Q Consensus 295 ~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT 370 (473)
....|......++... ..++||+|+++.-+..+.+.+.+.+.. +..++|+.. ...+|+|+|
T Consensus 117 tG~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T 178 (237)
T 2fz4_A 117 TGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVST 178 (237)
T ss_dssp SSTTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEE
T ss_pred CCCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEe
Confidence 3456665555555443 568999999999999999998877777 888888754 256789988
No 449
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=54.92 E-value=5.8 Score=35.71 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.3
Q ss_pred hcCCcEEEEccCCCChhH
Q 012013 134 LKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~ 151 (473)
..|.-+.+.+|.|||||+
T Consensus 29 ~~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKST 46 (253)
T ss_dssp ETTCEEEEECCSSSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 356778889999999997
No 450
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=54.79 E-value=6.9 Score=33.95 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=13.2
Q ss_pred EEEEccCCCChhHHhH
Q 012013 139 LIGIAETGSGKTLAYL 154 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~ 154 (473)
+++.+|+||||++.+.
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6778999999998644
No 451
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=54.79 E-value=6.3 Score=34.57 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCChhHHhH
Q 012013 136 GRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (473)
.+-+++.+|+||||++.+-
T Consensus 29 ~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp CEEEEEECCTTCCHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3457778999999998643
No 452
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=54.79 E-value=8.1 Score=32.37 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.1
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
..+++.+++|||||+++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35788999999999854
No 453
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=54.76 E-value=6.7 Score=34.35 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.3
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
..+++.+++|||||+.+
T Consensus 8 ~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46888999999999853
No 454
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=54.67 E-value=4.1 Score=37.94 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=15.5
Q ss_pred hcCCcEEEEccCCCChhH
Q 012013 134 LKGRDLIGIAETGSGKTL 151 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~ 151 (473)
..|.-+.+++|+|||||+
T Consensus 78 ~~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKST 95 (306)
T ss_dssp CTTCEEEEESSSCHHHHH
T ss_pred cCCCEEEEECCCCchHHH
Confidence 356788899999999997
No 455
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.43 E-value=11 Score=35.30 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=13.3
Q ss_pred EEEEccCCCChhHHh
Q 012013 139 LIGIAETGSGKTLAY 153 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~ 153 (473)
+++.+|.|+|||..+
T Consensus 49 ~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTI 63 (340)
T ss_dssp EEEECSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 899999999999753
No 456
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=54.20 E-value=7.8 Score=33.75 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=14.8
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
..+++.+++|||||+++-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468889999999998543
No 457
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=54.11 E-value=10 Score=35.86 Aligned_cols=25 Identities=28% Similarity=0.077 Sum_probs=17.8
Q ss_pred HHHHHhc-----CCcEEEEccCCCChhHHh
Q 012013 129 GWPMALK-----GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 129 ~i~~i~~-----~~~~l~~a~TGsGKT~~~ 153 (473)
.+..++. |.-+.+.+|+|+|||...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3455553 456788899999999753
No 458
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=54.07 E-value=6.3 Score=33.81 Aligned_cols=18 Identities=28% Similarity=0.152 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
+.-+++.++.|||||+.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 445788899999999853
No 459
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=54.06 E-value=19 Score=37.10 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=45.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHh-hcCCcEEEeChHHHHHHHHccCccccceeEE
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~v 250 (473)
..++||.|+++.-+..+++.+.+. ++.+..+++... ......+ .....|+||| +.+..+ .++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R-~~~l~~F~~g~~~VLVaT-----dv~~rG-iDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTT-----DISEMG-ANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTH-HHHTTHHHHSCCSEEEEC-----GGGGTT-CCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHH-HHHHHhhcCCCcEEEEEC-----cHHHcC-cccC-ceEE
Confidence 457999999999999999998876 366777877422 2222233 3457899999 444443 3443 6666
Q ss_pred e
Q 012013 251 V 251 (473)
Q Consensus 251 V 251 (473)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 460
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=53.94 E-value=7.2 Score=33.18 Aligned_cols=14 Identities=21% Similarity=0.378 Sum_probs=12.4
Q ss_pred EEEEccCCCChhHH
Q 012013 139 LIGIAETGSGKTLA 152 (473)
Q Consensus 139 ~l~~a~TGsGKT~~ 152 (473)
+++.+++|||||+.
T Consensus 3 I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 3 IAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 67889999999985
No 461
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=53.86 E-value=4.5 Score=34.03 Aligned_cols=15 Identities=33% Similarity=0.246 Sum_probs=12.5
Q ss_pred cEEEEccCCCChhHH
Q 012013 138 DLIGIAETGSGKTLA 152 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (473)
-+.+++++|||||+.
T Consensus 4 ~v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEEESCHHHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999974
No 462
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=53.67 E-value=8 Score=33.62 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.2
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
..+++.+++|||||+.+
T Consensus 5 ~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45788999999999854
No 463
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=53.64 E-value=12 Score=34.57 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCChhHHhH
Q 012013 136 GRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (473)
++.+.++++.|+|||+.+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SEEEEEECCTTTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4456677999999997533
No 464
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=53.60 E-value=6.7 Score=38.62 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=29.9
Q ss_pred CccCCcccCCCCHHHHHHHHHCCC---CCCCHHHHHHHHHHhcCCcEEEEccCCCChhHHh
Q 012013 96 KPVKSFRDVGFPDYVMQEISKAGF---FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~---~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~ 153 (473)
.|...|+++.-.+.+.+.|...-. ..|.-++ ......+.+++.+|+|+|||+.+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHH
Confidence 345678887656666665543210 0000000 01123467999999999999753
No 465
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=53.41 E-value=7 Score=32.67 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.1
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
+..+++.++.|||||++
T Consensus 5 g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45678889999999985
No 466
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=53.39 E-value=5.9 Score=33.89 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.2
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
-+++.++.|||||+++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999853
No 467
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=53.38 E-value=6.7 Score=37.38 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=18.6
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHH
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIVHV 161 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~~~ 161 (473)
..|.-+.+.+|.|||||+ ++-++.-+
T Consensus 28 ~~Ge~~~llGpsGsGKST--LLr~iaGl 53 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTT--LLRCLAGF 53 (359)
T ss_dssp CTTCEEEEEESTTSSHHH--HHHHHHTS
T ss_pred cCCCEEEEECCCCchHHH--HHHHHhcC
Confidence 346677889999999997 44454443
No 468
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=53.29 E-value=7.5 Score=33.20 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.0
Q ss_pred CcEEEEccCCCChhHHh
Q 012013 137 RDLIGIAETGSGKTLAY 153 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (473)
..+++.+++|||||+++
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999853
No 469
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=52.91 E-value=20 Score=35.26 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=43.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccCccchHHhh-cCCcEEEeChHHHHHHHHccCccccceeEE
Q 012013 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (473)
Q Consensus 172 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~v 250 (473)
..++||.||++.-+..+++.+.+. ++.+..+++.. .......+. ....|+||| +.+..+ .++.. ++|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~-R~~~~~~f~~g~~~iLVaT-----~v~~~G-iDip~-~~V 257 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKS-YDTEYPKCKNGDWDFVITT-----DISEMG-ANFGA-SRV 257 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTC-CCCCGGGSSSCCCSEEEES-----SCC----CCCSC-SEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHH-HHHHHhhccCCCceEEEEC-----ChHHhC-eecCC-CEE
Confidence 457999999999999999998876 46677777742 223333333 356899999 333332 34455 555
Q ss_pred e
Q 012013 251 V 251 (473)
Q Consensus 251 V 251 (473)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 4
No 470
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=52.78 E-value=7.7 Score=33.26 Aligned_cols=14 Identities=36% Similarity=0.249 Sum_probs=12.2
Q ss_pred EEEEccCCCChhHH
Q 012013 139 LIGIAETGSGKTLA 152 (473)
Q Consensus 139 ~l~~a~TGsGKT~~ 152 (473)
+.+.++.|||||++
T Consensus 5 i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 5 VGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999985
No 471
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=52.78 E-value=7.4 Score=38.96 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=27.6
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 012013 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~ 192 (473)
+.-+++.|++|+|||..++ -++..+... .+..|++++-- +-..|+...+
T Consensus 242 G~l~li~G~pG~GKT~lal-~~a~~~a~~------~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVR-QQALQWGTA------MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TCEEEEEESSCHHHHHHHH-HHHHHHTTT------SCCCEEEEESS-SCHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHH-HHHHHHHHh------cCCcEEEEecc-CCHHHHHHHH
Confidence 4567888999999997543 333333321 13457776542 2234444444
No 472
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=52.37 E-value=14 Score=29.79 Aligned_cols=38 Identities=5% Similarity=0.022 Sum_probs=30.7
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHhCCCC-eEEecCCCC
Q 012013 311 MDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 348 (473)
Q Consensus 311 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~ihg~~~ 348 (473)
..+.+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 34568999999988888999999999994 888989874
No 473
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=52.20 E-value=16 Score=28.94 Aligned_cols=37 Identities=11% Similarity=0.325 Sum_probs=31.4
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCC-eEEecCCCC
Q 012013 312 DGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 348 (473)
Q Consensus 312 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~ihg~~~ 348 (473)
.+.+++|+|.+-......+..|...|+. +..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 4568999999988888889999999996 788888873
No 474
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=52.20 E-value=13 Score=34.60 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=21.2
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 012013 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 179 (473)
++..+..|.|||+++.-.++..... +.+||++-
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~--------G~rVLlvD 49 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARS--------GKKTLVIS 49 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--------TCCEEEEE
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC--------CCcEEEEe
Confidence 4556899999998765544444332 55566654
No 475
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=52.12 E-value=11 Score=34.88 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=14.0
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
.+++.+|+|+|||..+
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6899999999999753
No 476
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=52.02 E-value=16 Score=31.65 Aligned_cols=32 Identities=25% Similarity=0.090 Sum_probs=19.2
Q ss_pred EEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 012013 141 GIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (473)
Q Consensus 141 ~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 180 (473)
....+|.|||++.+--+...... +.+|+++=|
T Consensus 7 ~s~kgGvGKTt~a~nLa~~la~~--------G~rVll~dp 38 (224)
T 1byi_A 7 TGTDTEVGKTVASCALLQAAKAA--------GYRTAGYKP 38 (224)
T ss_dssp EESSTTSCHHHHHHHHHHHHHHT--------TCCEEEECS
T ss_pred EECCCCCCHHHHHHHHHHHHHHC--------CCCEEEEcc
Confidence 34568999998755333322222 667887654
No 477
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=51.92 E-value=12 Score=31.75 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=22.9
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 012013 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 195 (473)
+++.+++|||||.-+.- +... +..+++++.....-..+.+.+...
T Consensus 2 ilV~Gg~~SGKS~~A~~-----la~~-------~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-----LIGD-------APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHH-----HHCS-------CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHH-----HHhc-------CCCeEEEecCCCCCHHHHHHHHHH
Confidence 57889999999964321 1111 233677776443334444444443
No 478
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=51.88 E-value=31 Score=42.57 Aligned_cols=47 Identities=9% Similarity=0.083 Sum_probs=31.5
Q ss_pred CHHHHHHHHHCCCCCCCHHHH-HHH---HHHhcCCcEEEEccCCCChhHHhH
Q 012013 107 PDYVMQEISKAGFFEPTPIQA-QGW---PMALKGRDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~Q~-~~i---~~i~~~~~~l~~a~TGsGKT~~~~ 154 (473)
.+.+.+.+.+.++ ++.+.+. +++ ..+..+..+++++|||||||.++-
T Consensus 874 ~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 874 RKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 3455666667776 5666553 333 334456678999999999999754
No 479
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=51.78 E-value=7.2 Score=37.08 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=19.0
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHH
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIVHV 161 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~~~ 161 (473)
..|.-+.+.+|.|||||+ ++-++.-+
T Consensus 39 ~~Ge~~~llGpnGsGKST--LLr~iaGl 64 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTT--ILRLIAGL 64 (355)
T ss_dssp ETTCEEEEECSTTSSHHH--HHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHH--HHHHHhCC
Confidence 356778889999999997 44455443
No 480
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=51.76 E-value=9.8 Score=30.42 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=33.3
Q ss_pred hHhCCCeEEEEeCChHHHHHHHHHHHhCCCC-eEEecCCCC
Q 012013 309 DIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 348 (473)
Q Consensus 309 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~ihg~~~ 348 (473)
.+..+.+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 78 ~l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 78 GLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CCCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred cCCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 3445678999999988888999999999994 888999864
No 481
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=51.76 E-value=57 Score=34.92 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=51.4
Q ss_pred HhCCCeEEEEeCChHHHHHHHHHH----HhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----c-----
Q 012013 310 IMDGSRILIFMDTKKGCDQITRQL----RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----A----- 374 (473)
Q Consensus 310 ~~~~~~~lVf~~~~~~~~~l~~~L----~~~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT~-~~-----~----- 374 (473)
...+..++|.++|..-|...++.+ +..|+.+.++.|+++..+|.... .++|+++|+ -+ .
T Consensus 149 aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~ 222 (922)
T 1nkt_A 149 ALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAH 222 (922)
T ss_dssp HTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhc
Confidence 345668999999999887766665 45689999999999987665543 368999994 22 1
Q ss_pred --cCCCCCCCCEEE
Q 012013 375 --RGLDVKDVKYVI 386 (473)
Q Consensus 375 --~Gidi~~v~~Vi 386 (473)
..++...+.++|
T Consensus 223 ~~~~l~lr~l~~lI 236 (922)
T 1nkt_A 223 SLDDLVQRGHHYAI 236 (922)
T ss_dssp SGGGCCCCCCCEEE
T ss_pred cHhhhccCCCCEEE
Confidence 135666777766
No 482
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=51.62 E-value=8.5 Score=31.60 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=13.3
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
.+++.++.|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3678899999999853
No 483
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=51.57 E-value=6.2 Score=37.03 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCChhHH
Q 012013 136 GRDLIGIAETGSGKTLA 152 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (473)
...+++.+|+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45799999999999975
No 484
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=51.53 E-value=15 Score=30.76 Aligned_cols=16 Identities=38% Similarity=0.206 Sum_probs=13.0
Q ss_pred CcEEEEccCCCChhHH
Q 012013 137 RDLIGIAETGSGKTLA 152 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (473)
.-++++++.|+|||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 3467889999999974
No 485
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=51.21 E-value=8.4 Score=32.91 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=12.8
Q ss_pred cEEEEccCCCChhHH
Q 012013 138 DLIGIAETGSGKTLA 152 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (473)
.+.+.+++|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467889999999984
No 486
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=51.19 E-value=5.7 Score=33.23 Aligned_cols=18 Identities=22% Similarity=0.032 Sum_probs=10.6
Q ss_pred CCcEEEEccCCCChhHHh
Q 012013 136 GRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (473)
..-+++.++.|||||+++
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788999999999853
No 487
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=51.12 E-value=35 Score=32.83 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHh---cCCcEEEEccCCCChhHHh
Q 012013 122 PTPIQAQGWPMAL---KGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 122 ~~~~Q~~~i~~i~---~~~~~l~~a~TGsGKT~~~ 153 (473)
|-..=..+|..+. .|+.+.+.+|+|+|||...
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 3344456666654 5889999999999999753
No 488
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=51.01 E-value=6.8 Score=33.15 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.0
Q ss_pred EEEEccCCCChhHHhH
Q 012013 139 LIGIAETGSGKTLAYL 154 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~ 154 (473)
+++.++.|||||++.-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5778999999998643
No 489
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=51.01 E-value=13 Score=36.32 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=13.7
Q ss_pred CcEEEEccCCCChhHHhH
Q 012013 137 RDLIGIAETGSGKTLAYL 154 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (473)
+.++++++.|+|||+...
T Consensus 99 ~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346677999999998643
No 490
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=50.87 E-value=8.5 Score=33.29 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.4
Q ss_pred cEEEEccCCCChhHHh
Q 012013 138 DLIGIAETGSGKTLAY 153 (473)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (473)
.+++.+++|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999853
No 491
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=50.76 E-value=7.5 Score=35.82 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCCChhH
Q 012013 135 KGRDLIGIAETGSGKTL 151 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~ 151 (473)
.|.-+.+.+|.|||||+
T Consensus 63 ~Ge~~~i~G~NGsGKST 79 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTS 79 (290)
T ss_dssp TTCEEEEEESTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56778889999999997
No 492
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=50.70 E-value=8.8 Score=34.20 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=16.3
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHH
Q 012013 137 RDLIGIAETGSGKTLAYLLPAIVHV 161 (473)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~~ 161 (473)
.-+.+.+|.|||||+ ++-++.-+
T Consensus 25 e~~~liG~nGsGKST--Ll~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSV--FLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHH--HHHHHHTS
T ss_pred EEEEEECCCCCCHHH--HHHHHhCC
Confidence 456778999999997 44444443
No 493
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=50.69 E-value=15 Score=34.46 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=21.6
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 012013 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 179 (473)
+++.+..|.|||+++..-+...... +.+++++-
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~--------G~rVllvD 54 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKV--------RSSVLLIS 54 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTS--------SSCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHC--------CCeEEEEE
Confidence 4556999999998765444444322 56677763
No 494
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=50.66 E-value=18 Score=39.26 Aligned_cols=70 Identities=13% Similarity=0.199 Sum_probs=44.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccccc-----CC-CCCC
Q 012013 313 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAAR-----GL-DVKD 381 (473)
Q Consensus 313 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~f~~g~~~iLvaT-~~~~~-----Gi-di~~ 381 (473)
..++||.++++.-+..+...++. .++.+..+||+.+...+...+. ...+|+|+| ..+.. -+ .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 56899999999888887777654 3899999999986654332221 136799999 33321 12 4555
Q ss_pred CCEEE
Q 012013 382 VKYVI 386 (473)
Q Consensus 382 v~~Vi 386 (473)
+++||
T Consensus 372 ~~liV 376 (936)
T 4a2w_A 372 FTLMI 376 (936)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 67766
No 495
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=50.62 E-value=9.4 Score=32.74 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCChhHHh
Q 012013 135 KGRDLIGIAETGSGKTLAY 153 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (473)
.+.-+++.++.|||||++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3456888999999999853
No 496
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=50.59 E-value=7.9 Score=37.20 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=18.9
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHH
Q 012013 134 LKGRDLIGIAETGSGKTLAYLLPAIVHV 161 (473)
Q Consensus 134 ~~~~~~l~~a~TGsGKT~~~~l~~l~~~ 161 (473)
..|.-+.+.+|.|||||+ ++-++.-+
T Consensus 27 ~~Ge~~~llGpsGsGKST--LLr~iaGl 52 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKST--LLRMIAGL 52 (381)
T ss_dssp CTTCEEEEECCTTSSHHH--HHHHHHTS
T ss_pred CCCCEEEEEcCCCchHHH--HHHHHHcC
Confidence 346677889999999997 44455443
No 497
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=50.40 E-value=8 Score=36.85 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=18.5
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHH
Q 012013 135 KGRDLIGIAETGSGKTLAYLLPAIVHV 161 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~~ 161 (473)
.|.-+.+.+|.|||||+ ++-++.-+
T Consensus 28 ~Ge~~~llGpnGsGKST--LLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTT--TLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHHTS
T ss_pred CCCEEEEEcCCCchHHH--HHHHHHCC
Confidence 46677889999999997 44455443
No 498
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=50.21 E-value=9.4 Score=34.16 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=14.6
Q ss_pred cCCcEEEEccCCCChhHH
Q 012013 135 KGRDLIGIAETGSGKTLA 152 (473)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (473)
.+..+.+.+|+|||||+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345678889999999984
No 499
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=50.15 E-value=8.9 Score=32.58 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHhHHHH
Q 012013 139 LIGIAETGSGKTLAYLLPA 157 (473)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~ 157 (473)
+.+.+++|||||++.-+.+
T Consensus 11 I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 500
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=49.94 E-value=8 Score=37.29 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=0.0
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHH
Q 012013 133 ALKGRDLIGIAETGSGKTLAYLLPAIV 159 (473)
Q Consensus 133 i~~~~~~l~~a~TGsGKT~~~~l~~l~ 159 (473)
+..|.-+.+.+|+|||||+ ++-++.
T Consensus 44 i~~Ge~~~llGpsGsGKST--LLr~ia 68 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKST--LLSAFL 68 (390)
T ss_dssp ECTTCEEEEEESTTSSHHH--HHHHHH
T ss_pred EcCCCEEEEECCCCChHHH--HHHHHh
Done!