BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012015
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 258 bits (660), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 182/500 (36%), Positives = 269/500 (53%), Gaps = 44/500 (8%)
Query: 2 EKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYV---SSLRATLPWRDDDT 58
E+ Q+ + +S N++ F S P I +P +S DY+ S AT P
Sbjct: 28 EQAVSQVMEKQSNNNNSDVIFRSKLPDIYIPNH---LSLHDYIFQNISEFATKP------ 78
Query: 59 VALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118
LIN TG ++S+ + +A+ + +++ND +L N E + + +
Sbjct: 79 -CLINGPTGHVYTYSDVHVISRQIAANFHKLG-VNQNDVVMLLLPNCPEFVLSFLAASFR 136
Query: 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHR----TILIDSPE---- 170
G + ANP T +EI++Q + SN + + V K+ L++ + ID E
Sbjct: 137 GATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPI 196
Query: 171 ------FDSMTMSWNSKHE-LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS 223
F +T S E +D ++ DV A+ YSSGTTG KGVMLTH+ L +VA
Sbjct: 197 PEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ 256
Query: 224 SFASSPKRV---SPAVMLFTMPYFHIYGL---FFC-FRAAALMETAVVMQRFDLKMMLKA 276
+ S V+L +P FHIY L C R A + ++M +F++ ++L+
Sbjct: 257 QVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAI---LIMPKFEINLLLEL 313
Query: 277 VEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL 336
++ +VT A + PPIV+A++K T+ YDLSS+ V GAAPLGK+ A +KFP L
Sbjct: 314 IQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKL 373
Query: 337 VQAYGLTESTAGVFRTVG----PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
Q YG+TE+ + ++G P + G+ G + E KIVDP+TGDSL + GE+
Sbjct: 374 GQGYGMTEAGPVLAMSLGFAKEPFPVKS-GACGTVVRNAEMKIVDPDTGDSLSRNQPGEI 432
Query: 393 SIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVA 452
IRG IMKGY+ P T+ T+ DGW+ TGD+ ID+D LFIVDRLK+LIKYKG+QVA
Sbjct: 433 CIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVA 492
Query: 453 PAELEHLLLSHREVADAAVI 472
PAELE LL+ H ++ D AV+
Sbjct: 493 PAELEALLIGHPDITDVAVV 512
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/440 (34%), Positives = 233/440 (52%), Gaps = 35/440 (7%)
Query: 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117
T+A ++ + ++++E+ + LA ++ L+ N V S NS++ + L
Sbjct: 39 TIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYG-LNTNHRIVVCSENSLQFFMPVLGALF 97
Query: 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK------HRTILIDSPE- 170
+GV ++PAN + E E+ + +S P + F + + K+ ++ + I++DS
Sbjct: 98 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD 157
Query: 171 ---FDSMTMSWNSK------------HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR 215
F SM S DR K +A IM SSG+TG KGV L HR
Sbjct: 158 YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKT----IALIMNSSGSTGLPKGVALPHR 213
Query: 216 NLTAAVASSFASSP----KRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLK 271
TA V S A P + + +L +P+ H +G+F V+M RF+ +
Sbjct: 214 --TACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEE 271
Query: 272 MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF 331
+ L++++++++ A + P + +K D YDLS+L +A G APL K+ A A +F
Sbjct: 272 LFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331
Query: 332 PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE 391
+ Q YGLTE+T+ + T P+ + G+ G++ EAK+VD +TG +L + GE
Sbjct: 332 HLPGIRQGYGLTETTSAILIT--PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGE 389
Query: 392 LSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
L +RGP IM GYV PE T+A + DGW+ +GD+ Y DED FIVDRLK LIKYKGYQV
Sbjct: 390 LCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449
Query: 452 APAELEHLLLSHREVADAAV 471
APAELE +LL H + DA V
Sbjct: 450 APAELESILLQHPNIFDAGV 469
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/440 (34%), Positives = 233/440 (52%), Gaps = 35/440 (7%)
Query: 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117
T+A ++ + ++++E+ + LA ++ L+ N V S NS++ + L
Sbjct: 39 TIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYG-LNTNHRIVVCSENSLQFFMPVLGALF 97
Query: 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK------HRTILIDSPE- 170
+GV ++PAN + E E+ + +S P + F + + K+ ++ + I++DS
Sbjct: 98 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD 157
Query: 171 ---FDSMTMSWNSK------------HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR 215
F SM S DR K +A IM SSG+TG KGV L HR
Sbjct: 158 YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKT----IALIMNSSGSTGLPKGVALPHR 213
Query: 216 NLTAAVASSFASSP----KRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLK 271
TA V S A P + + +L +P+ H +G+F V+M RF+ +
Sbjct: 214 --TACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEE 271
Query: 272 MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF 331
+ L++++++++ A + P + +K D YDLS+L +A G APL K+ A A +F
Sbjct: 272 LFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331
Query: 332 PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE 391
+ Q YGLTE+T+ + T P+ + G+ G++ EAK+VD +TG +L + GE
Sbjct: 332 HLPGIRQGYGLTETTSAILIT--PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGE 389
Query: 392 LSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
L +RGP IM GYV PE T+A + DGW+ +GD+ Y DED FIVDRLK LIKYKGYQV
Sbjct: 390 LCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449
Query: 452 APAELEHLLLSHREVADAAV 471
APAELE +LL H + DA V
Sbjct: 450 APAELESILLQHPNIFDAGV 469
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/440 (34%), Positives = 233/440 (52%), Gaps = 35/440 (7%)
Query: 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117
T+A ++ + ++++E+ + LA ++ L+ N V S NS++ + L
Sbjct: 44 TIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYG-LNTNHRIVVCSENSLQFFMPVLGALF 102
Query: 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK------HRTILIDSPE- 170
+GV ++PAN + E E+ + +S P + F + + K+ ++ + I++DS
Sbjct: 103 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD 162
Query: 171 ---FDSMTMSWNSK------------HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR 215
F SM S DR K +A IM SSG+TG KGV L HR
Sbjct: 163 YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKT----IALIMNSSGSTGLPKGVALPHR 218
Query: 216 NLTAAVASSFASSP----KRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLK 271
TA V S A P + + +L +P+ H +G+F V+M RF+ +
Sbjct: 219 --TACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEE 276
Query: 272 MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF 331
+ L++++++++ A + P + +K D YDLS+L +A G APL K+ A A +F
Sbjct: 277 LFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 336
Query: 332 PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE 391
+ Q YGLTE+T+ + T P+ + G+ G++ EAK+VD +TG +L + GE
Sbjct: 337 HLPGIRQGYGLTETTSAILIT--PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGE 394
Query: 392 LSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
L +RGP IM GYV PE T+A + DGW+ +GD+ Y DED FIVDRLK LIKYKGYQV
Sbjct: 395 LCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 454
Query: 452 APAELEHLLLSHREVADAAV 471
APAELE +LL H + DA V
Sbjct: 455 APAELESILLQHPNIFDAGV 474
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 242 bits (618), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 153/440 (34%), Positives = 234/440 (53%), Gaps = 35/440 (7%)
Query: 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117
T+A ++ + ++++E+ + LA ++ L+ N V S NS++ + L
Sbjct: 44 TIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYG-LNTNHRIVVSSENSLQFFMPVLGALF 102
Query: 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK------HRTILIDSPE- 170
+GV ++PAN E E+ + +S P + F + + K+ ++ + I++DS
Sbjct: 103 IGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD 162
Query: 171 ---FDSMTMSWNSK------------HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR 215
F SM S DR K +A IM SSG+TG KGV L HR
Sbjct: 163 YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKT----IALIMNSSGSTGLPKGVALPHR 218
Query: 216 NLTAAVASSFASSP---KRVSP-AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLK 271
L AV S A P +++P +L +P+ H +G+F V+M RF+ +
Sbjct: 219 AL--AVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEE 276
Query: 272 MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF 331
+ L++++++++ A + P + ++K D YDLS+L +A G APL K+ A A +F
Sbjct: 277 LFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 336
Query: 332 PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE 391
+ Q YGLTE+T+ + T P + G+ G++ EAK+VD +TG +L + GE
Sbjct: 337 HLPGIRQGYGLTETTSAILIT--PKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGE 394
Query: 392 LSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
LS+RGP IM GYV PE T+A + DGW+ +GD+ Y DED FIVDRLK LIKYKG QV
Sbjct: 395 LSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQV 454
Query: 452 APAELEHLLLSHREVADAAV 471
APAELE +LL H + DA V
Sbjct: 455 APAELESILLQHPNIFDAGV 474
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 157/433 (36%), Positives = 241/433 (55%), Gaps = 27/433 (6%)
Query: 60 ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
LIN G ++++ +AS L + + + D + +S E + + G
Sbjct: 40 CLINGANGDVYTYADVELTARRVASGLNKIG-IQQGDVIMLFLPSSPEFVLAFLGASHRG 98
Query: 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH----RTILIDSP-----E 170
II+ ANP +T +E+++ + S + + K+ + + +DS
Sbjct: 99 AIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLH 158
Query: 171 FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK 230
F +T + ++E + + DV A+ YSSGTTG KGVMLTH+ L +VA
Sbjct: 159 FSELTQA--DENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP 216
Query: 231 RV---SPAVMLFTMPYFHIYGL---FFC-FRAAALMETAVVMQRFDLKMMLKAVEEFRVT 283
+ S V+L +P FHIY L C R A + ++M +F++ +L +E+++V+
Sbjct: 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPI---LIMPKFEIGSLLGLIEKYKVS 273
Query: 284 HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343
A V PP++++++K D +DLSSL + G APLGK+ +KFP+ L Q YG+T
Sbjct: 274 IAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMT 333
Query: 344 ESTAGVFRTVG----PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI 399
E+ + + P + + G+ G + E KIVDPETG SLP + GE+ IRG I
Sbjct: 334 EAGPVLAMCLAFAKEPFDIKP-GACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQI 392
Query: 400 MKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHL 459
MKGY+ +PE TS T+ +GW+ TGD+ YID+D LFIVDRLK+LIKYKG+QVAPAELE L
Sbjct: 393 MKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEAL 452
Query: 460 LLSHREVADAAVI 472
L++H E++DAAV+
Sbjct: 453 LIAHPEISDAAVV 465
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 239 bits (609), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 150/439 (34%), Positives = 231/439 (52%), Gaps = 35/439 (7%)
Query: 59 VALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118
+A N+VTG+ S++E+ ++ L LQN + A S N E I + L +
Sbjct: 42 IAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALC-SENCEEFFIPVIAGLFI 100
Query: 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEFD- 172
GV ++P N + T E+ + +S P I F++ + K+ ++ +TI+I + D
Sbjct: 101 GVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDY 160
Query: 173 ----------------SMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
S E+DR + VA IM SSG+TG KGV LTH N
Sbjct: 161 RGYQCLDTFIKRNTPPGYQASSFKTVEVDR----KEQVALIMNSSGSTGLPKGVQLTHEN 216
Query: 217 LTAAVASSFASSP---KRVSPAVMLFTM-PYFHIYGLFFCFRAAALMETAVVMQRFDLKM 272
+ S A P +VSP + T+ P+ H +G+F V++ +FD +
Sbjct: 217 IVTRF--SHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEET 274
Query: 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332
LK +++++ T+ + P + ++K + YDLS+L +A G APL K+ A A +F
Sbjct: 275 FLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFN 334
Query: 333 KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
+ Q YGLTE+T+ + T P+ + G++G++ +AK++D +T SL P + GE+
Sbjct: 335 LPGVRQGYGLTETTSAIIIT--PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392
Query: 393 SIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVA 452
++GP +MKGYV PE T + +GW+ TGD+ Y DE+ FIVDRLK LIKYKGYQV
Sbjct: 393 CVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVP 452
Query: 453 PAELEHLLLSHREVADAAV 471
PAELE +LL H + DA V
Sbjct: 453 PAELESVLLQHPSIFDAGV 471
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 238 bits (608), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 151/442 (34%), Positives = 236/442 (53%), Gaps = 38/442 (8%)
Query: 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117
T+A ++ + +++SE+ LA ++ ++ A V S NS++ + L
Sbjct: 73 TIAFTDAHAEVNITYSEYFEMACRLAETMKRYGLGLQHHIA-VCSENSLQFFMPVCGALF 131
Query: 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK------HRTILIDSPEF 171
+GV ++P N + E E+ + +S P I F + + K+ ++ + +++DS E
Sbjct: 132 IGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSRE- 190
Query: 172 DSM----TMSWNSKH-------------ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTH 214
D M S+ H DR ++ A IM SSG+TG KGV LTH
Sbjct: 191 DYMGKQSMYSFIESHLPAGFNEYDYIPDSFDR----ETATALIMNSSGSTGLPKGVELTH 246
Query: 215 RNLTAAVASSFASSP---KRVSPAVMLFT-MPYFHIYGLFFCFRAAALMETAVVMQRFDL 270
+N+ V S P ++ P + T +P+ H +G+F V+M RF+
Sbjct: 247 KNI--CVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTLGYLTCGFRIVLMYRFEE 304
Query: 271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330
++ L++++++++ A + P + +K D YDLS+L +A G APL K+ A A +
Sbjct: 305 ELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKR 364
Query: 331 FPKVVLVQAYGLTESTAGVFRT-VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE 389
F + Q YGLTE+T+ + T G D+ + G+ G++ AKIVD +TG +L +
Sbjct: 365 FKLPGIRQGYGLTETTSAIIITPRGRDD--KPGACGKVVPFFSAKIVDLDTGKTLGVNQR 422
Query: 390 GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGY 449
GEL ++GP IMKGYV PE TSA + DGW+ +GD+ Y D+DG+ FIVDRLK LIKYKGY
Sbjct: 423 GELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGY 482
Query: 450 QVAPAELEHLLLSHREVADAAV 471
QV PAELE +LL H + DA V
Sbjct: 483 QVPPAELESILLQHPFIFDAGV 504
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 238 bits (608), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 150/439 (34%), Positives = 230/439 (52%), Gaps = 35/439 (7%)
Query: 59 VALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118
+A N+VTG+ S++E+ ++ L LQN + A S N E I + L +
Sbjct: 42 IAFTNAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALC-SENCEEFFIPVIAGLFI 100
Query: 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEFD- 172
GV ++P N + T E+ + +S P I F++ + K+ ++ +TI+I + D
Sbjct: 101 GVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDY 160
Query: 173 ----------------SMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
S E+DR + VA IM SSG+TG KGV LTH N
Sbjct: 161 RGYQCLDTFIKRNTPPGFQASSFKTVEVDR----KEQVALIMNSSGSTGLPKGVQLTHEN 216
Query: 217 LTAAVASSFASSP---KRVSPAVMLFTM-PYFHIYGLFFCFRAAALMETAVVMQRFDLKM 272
+ S A P +VSP + T+ P+ H +G+F V++ +FD +
Sbjct: 217 IVTRF--SHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEET 274
Query: 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332
LK +++++ T + P + ++K + YDLS+L +A G APL K+ A A +F
Sbjct: 275 FLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFN 334
Query: 333 KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
+ Q YGLTE+T+ + T P+ + G++G++ +AK++D +T SL P + GE+
Sbjct: 335 LPGVRQGYGLTETTSAIIIT--PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392
Query: 393 SIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVA 452
++GP +MKGYV PE T + +GW+ TGD+ Y DE+ FIVDRLK LIKYKGYQV
Sbjct: 393 CVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVP 452
Query: 453 PAELEHLLLSHREVADAAV 471
PAELE +LL H + DA V
Sbjct: 453 PAELESVLLQHPSIFDAGV 471
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 238 bits (607), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 150/439 (34%), Positives = 230/439 (52%), Gaps = 35/439 (7%)
Query: 59 VALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118
+A N+VTG+ S++E+ ++ L LQN + A S N E I + L +
Sbjct: 42 IAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALC-SENCEEFFIPVIAGLFI 100
Query: 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEFD- 172
GV ++P N + T E+ + +S P I F++ + K+ ++ +TI+I + D
Sbjct: 101 GVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDY 160
Query: 173 ----------------SMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
S E+DR + VA IM SSG+TG KGV LTH N
Sbjct: 161 RGYQCLDTFIKRNTPPGFQASSFKTVEVDR----KEQVALIMNSSGSTGLPKGVQLTHEN 216
Query: 217 LTAAVASSFASSP---KRVSPAVMLFTM-PYFHIYGLFFCFRAAALMETAVVMQRFDLKM 272
+ S A P +VSP + T+ P+ H +G+F V++ +FD +
Sbjct: 217 IVTRF--SHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEET 274
Query: 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332
LK +++++ T + P + ++K + YDLS+L +A G APL K+ A A +F
Sbjct: 275 FLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFN 334
Query: 333 KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
+ Q YGLTE+T+ + T P+ + G++G++ +AK++D +T SL P + GE+
Sbjct: 335 LPGVRQGYGLTETTSAIIIT--PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392
Query: 393 SIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVA 452
++GP +MKGYV PE T + +GW+ TGD+ Y DE+ FIVDRLK LIKYKGYQV
Sbjct: 393 CVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVP 452
Query: 453 PAELEHLLLSHREVADAAV 471
PAELE +LL H + DA V
Sbjct: 453 PAELESVLLQHPSIFDAGV 471
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 197/420 (46%), Gaps = 16/420 (3%)
Query: 60 ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
A + T +R+++++ N A L + ++K D +L NS+E L++ LG
Sbjct: 34 AYVEPSTDVRMTYAQMNALANRCADVLTALG-IAKGDRVALLMPNSVEFCCLFYGAAKLG 92
Query: 120 VIISPANPVNTESEISRQIQLS-NPVIAFATSS--VVHKL-AKLKHRTILIDSPEFDSMT 175
+ P N E+S + S + V+ + S V+ + A+ + D DS+
Sbjct: 93 AVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLA 152
Query: 176 MSWNSKHELDRAKVCQSDVAA-IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP 234
S + A C D IMY+SGTTG KGV+ TH ++ +A ASS+AS+
Sbjct: 153 ERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSA-ASSWASTIDVRYR 211
Query: 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
+L +P FH+ L +A T + M +FD + + E RV P I+
Sbjct: 212 DRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNF 271
Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
M + D G AP+ + I +A+K + +VQ Y LTES G +
Sbjct: 272 MRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLS 329
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDS--LPPGKEGELSIRGPTIMKGYVGEPEVTSA 412
D R+ GS GR + + + GD + EGE+ I+ ++K Y PE T
Sbjct: 330 EDALRKAGSAGRATMFTDVAV----RGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRD 385
Query: 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
+GW RTGD+ ID++G+L+I DRLKD+I G V PAE+E +++ V++ AVI
Sbjct: 386 AF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVI 444
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 194/429 (45%), Gaps = 23/429 (5%)
Query: 55 DDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYF 113
DD I + G ++S++E R +A+ L V R L D + S+E +LY
Sbjct: 14 DDPHKLAIETAAGDKISYAELVARAGRVANVL--VARGLQVGDRVAAQTEKSVEALVLYL 71
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHR---TILIDSPE 170
+ + G + P N T E+ I + P I S +A + + T+ P+
Sbjct: 72 ATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPD 131
Query: 171 -----FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
D+ + + +DR D+AAI+Y+SGTTGR KG L+H NL A+ + +
Sbjct: 132 GRGSLTDAAAGASEAFATIDRG---ADDLAAILYTSGTTGRSKGAXLSHDNL-ASNSLTL 187
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME-TAVVMQRFDLKMMLKAVEEFRVTH 284
+ V++ +P +H +GLF + + + +FD +L R T
Sbjct: 188 VDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATV 245
Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
P + + G+APL DT +++K VL + YG TE
Sbjct: 246 LXGVPTFYTRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVL-ERYGXTE 304
Query: 345 STAGVFRTVGP-DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY 403
+ T P D R G+ G G+ A++ DPETG LP G G + ++GP + KGY
Sbjct: 305 TNX---NTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGY 361
Query: 404 VGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSH 463
PE T + DG+ TGDL IDE G++ I+ R KDL+ G+ V P E+E + +
Sbjct: 362 WRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAX 421
Query: 464 REVADAAVI 472
V ++AVI
Sbjct: 422 PGVVESAVI 430
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 137 bits (346), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 130/425 (30%), Positives = 193/425 (45%), Gaps = 31/425 (7%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
+F E T LAS + + K + V NSI+ ++L + P NP
Sbjct: 54 NFLEICEVTKKLASGISR-KGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYK 112
Query: 131 ESEISRQIQLSNPVIAFATSSVVHK---------LAKLKHRTILIDSPEFDSMTMSWNSK 181
E+ + S AT+ VVH L K + + E +S++ +S
Sbjct: 113 SFELEHILNDSE-----ATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDSG 167
Query: 182 HE-LDRAKVC-QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLF 239
E + KV + DVA I Y+ GTTG KGV LTH NL AA A A + ++
Sbjct: 168 SEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNL-AANALQLAVATGLSHXDTIVG 226
Query: 240 TMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPI--VVAMSK 297
P FH + VV F+ + + + +E+++ T + PP V+ +
Sbjct: 227 CXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTL 286
Query: 298 GGSTDGYDLSSLETVACGAAPLGK---DTIMAFASK---FPKVVLVQAYGLTESTAGVFR 351
S YD S L+ A GA P+ + ++ A++ P++ Q +G TE+ V
Sbjct: 287 ESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXV-T 345
Query: 352 TVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTS 411
T P + + G + +E K++ E G L G+ GE+ IRGP I KGY +
Sbjct: 346 TNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQ 405
Query: 412 ATLLPD----GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVA 467
D + RTGD+ +IDE+GFL DR+K++IKYKGY +AP ELE LL H V
Sbjct: 406 ECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVX 465
Query: 468 DAAVI 472
D AVI
Sbjct: 466 DVAVI 470
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 120/460 (26%), Positives = 212/460 (46%), Gaps = 30/460 (6%)
Query: 35 DAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSK 94
D ++ D++ RA + + V+ +++ R +++E +R L L+ + +
Sbjct: 15 DEELNLWDFLE--RAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALG-VGV 71
Query: 95 NDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISR-------QIQLSNPVIAF 147
D L N YF++ +G ++ ANP + EI+ ++ L +P +
Sbjct: 72 GDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLP 131
Query: 148 ATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRV 207
++ +L ++H ++ + + E D +V + + Y++GTTG
Sbjct: 132 LVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLP 191
Query: 208 KGVMLTHRNLT-AAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ 266
KGV+ +HR L ++A+S V+L +P FH+ + AA L+ V+
Sbjct: 192 KGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPY-AATLVGAKQVLP 250
Query: 267 --RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTI 324
R D +++ + VT A P + +A++ + G+ L +L + G + + I
Sbjct: 251 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLI 310
Query: 325 MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDP------ 378
F V + Q YGLTE++ V + +L+ L+AK P
Sbjct: 311 ARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLT--LKAKTGLPIPLVRL 366
Query: 379 ----ETGDSLPP-GKE-GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDG 432
E G +P GK GE+ ++GP I GY G E T + L PDG+ RTGD+ DE+G
Sbjct: 367 RVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEG 426
Query: 433 FLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
++ I DRLKDLIK G ++ +LE+ L+ H +V +AAV+
Sbjct: 427 YVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVV 466
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 121/429 (28%), Positives = 191/429 (44%), Gaps = 23/429 (5%)
Query: 55 DDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYF 113
DD I + G +S++E R +A+ L V R L D + S+E +LY
Sbjct: 14 DDPHXLAIETAAGDXISYAELVARAGRVANVL--VARGLQVGDRVAAQTEXSVEALVLYL 71
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV---VHKLAKLKHRTILIDSPE 170
+ + G + P N T E+ I + P I S + +A T+ P+
Sbjct: 72 ATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPD 131
Query: 171 -----FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
D+ + + +DR D+AAI+Y+SGTTGR G ML+H NL A+ + +
Sbjct: 132 GRGSLTDAAAGASEAFATIDRGA---DDLAAILYTSGTTGRSXGAMLSHDNL-ASNSLTL 187
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV-MQRFDLKMMLKAVEEFRVTH 284
+ V++ +P +H +GLF +++ + FD +L + R T
Sbjct: 188 VDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATV 245
Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
P + + + G+APL DT +++ VL + YG+TE
Sbjct: 246 LMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTE 304
Query: 345 STAGVFRTVGP-DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY 403
+ T P D R G+ G G+ A++ DPETG LP G G + + GP + GY
Sbjct: 305 TN---MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGY 361
Query: 404 VGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSH 463
PE T + DG+ TGDL IDE G++ I+ R DL+ G+ V P E+E + +
Sbjct: 362 WRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAM 421
Query: 464 REVADAAVI 472
V ++AVI
Sbjct: 422 PGVVESAVI 430
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 121/429 (28%), Positives = 191/429 (44%), Gaps = 23/429 (5%)
Query: 55 DDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYF 113
DD I + G +S++E R +A+ L V R L D + S+E +LY
Sbjct: 14 DDPHXLAIETAAGDXISYAELVARAGRVANVL--VARGLQVGDRVAAQTEXSVEALVLYL 71
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV---VHKLAKLKHRTILIDSPE 170
+ + G + P N T E+ I + P I S + +A T+ P+
Sbjct: 72 ATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPD 131
Query: 171 -----FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
D+ + + +DR D+AAI+Y+SGTTGR G ML+H NL A+ + +
Sbjct: 132 GRGSLTDAAAGASEAFATIDRGA---DDLAAILYTSGTTGRSXGAMLSHDNL-ASNSLTL 187
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV-MQRFDLKMMLKAVEEFRVTH 284
+ V++ +P +H +GLF +++ + FD +L + R T
Sbjct: 188 VDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATV 245
Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
P + + + G+APL DT +++ VL + YG+TE
Sbjct: 246 LMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTE 304
Query: 345 STAGVFRTVGP-DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY 403
+ T P D R G+ G G+ A++ DPETG LP G G + + GP + GY
Sbjct: 305 TN---MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGY 361
Query: 404 VGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSH 463
PE T + DG+ TGDL IDE G++ I+ R DL+ G+ V P E+E + +
Sbjct: 362 WRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAM 421
Query: 464 REVADAAVI 472
V ++AVI
Sbjct: 422 PGVVESAVI 430
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 121/429 (28%), Positives = 191/429 (44%), Gaps = 23/429 (5%)
Query: 55 DDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYF 113
DD I + G +S++E R +A+ L V R L D + S+E +LY
Sbjct: 14 DDPHXLAIETAAGDXISYAELVARAGRVANVL--VARGLQVGDRVAAQTEXSVEALVLYL 71
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV---VHKLAKLKHRTILIDSPE 170
+ + G + P N T E+ I + P I S + +A T+ P+
Sbjct: 72 ATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPD 131
Query: 171 -----FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
D+ + + +DR D+AAI+Y+SGTTGR G ML+H NL A+ + +
Sbjct: 132 GRGSLTDAAAGASEAFATIDRGA---DDLAAILYTSGTTGRSXGAMLSHDNL-ASNSLTL 187
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV-MQRFDLKMMLKAVEEFRVTH 284
+ V++ +P +H +GLF +++ + FD +L + R T
Sbjct: 188 VDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATV 245
Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
P + + + G+APL DT +++ VL + YG+TE
Sbjct: 246 LMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTE 304
Query: 345 STAGVFRTVGP-DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY 403
+ T P D R G+ G G+ A++ DPETG LP G G + + GP + GY
Sbjct: 305 TN---MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGY 361
Query: 404 VGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSH 463
PE T + DG+ TGDL IDE G++ I+ R DL+ G+ V P E+E + +
Sbjct: 362 WRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAM 421
Query: 464 REVADAAVI 472
V ++AVI
Sbjct: 422 PGVVESAVI 430
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 175/386 (45%), Gaps = 16/386 (4%)
Query: 60 ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
A + T +R+++++ N A L + ++K D +L NS+E L++ LG
Sbjct: 20 AYVEPSTDVRMTYAQMNALANRCADVLTALG-IAKGDRVALLMPNSVEFCCLFYGAAKLG 78
Query: 120 VIISPANPVNTESEISRQIQLS-NPVIAFATSS--VVHKL-AKLKHRTILIDSPEFDSMT 175
+ P N E+S + S + V+ + S V+ + A+ + D DS+
Sbjct: 79 AVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLA 138
Query: 176 MSWNSKHELDRAKVCQSDVAA-IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP 234
S + A C D IMY+SGTTG KGV+ TH ++ +A ASS+AS+
Sbjct: 139 ERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSA-ASSWASTIDVRYR 197
Query: 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
+L +P FH+ L +A T + M +FD + + E RV P I+
Sbjct: 198 DRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNF 257
Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
M + D G AP+ + I +A+K + +VQ Y LTES G +
Sbjct: 258 MRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLS 315
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDS--LPPGKEGELSIRGPTIMKGYVGEPEVTSA 412
D R+ GS GR + + + GD + EGE+ I+ ++K Y PE T
Sbjct: 316 EDALRKAGSAGRATMFTDVAV----RGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRD 371
Query: 413 TLLPDGWMRTGDLCYIDEDGFLFIVD 438
+GW RTGD+ ID++G+L+I D
Sbjct: 372 A-FDNGWFRTGDIGEIDDEGYLYIKD 396
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 114/417 (27%), Positives = 176/417 (42%), Gaps = 21/417 (5%)
Query: 65 VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISP 124
V G+R++ ++ R LAS L + D +LS N E+ L ++ +G I+ P
Sbjct: 27 VDGVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVALIGAILLP 85
Query: 125 ANPVNTESEISRQIQLSNPVIAFA-------TSSVVHKLAKLKHRTILIDSPEFDSMTMS 177
N EI+ + P + A + V+ L +K + D +
Sbjct: 86 VNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKD 145
Query: 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVM 237
S + +D I++++ GR +G +++ NL A SS + + V
Sbjct: 146 LASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIA-QSSLVDAWRLTEADVN 204
Query: 238 LFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
L +P FH+ GL +V+ +FD + +E +VT A P++ +
Sbjct: 205 LGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILD 264
Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357
+ L+SL V P +TI F + P +G +E++ T P
Sbjct: 265 QAAP--AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSG--LSTFAPYR 317
Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD 417
R S GR +VD E LPPG+ GE+ +RGPT+ KGY T +
Sbjct: 318 DRP-KSAGRPLFWRTVAVVDAED-RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-N 374
Query: 418 GWMRTGDLCYIDEDGFLFIVDRL--KDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
GW TGD+ D DG+LF R K+LIK G V PAE+E L H +ADA VI
Sbjct: 375 GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVI 431
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 113/422 (26%), Positives = 180/422 (42%), Gaps = 32/422 (7%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
S+ E R + LA+ Q + + + D V N E + F+L LG + A P +
Sbjct: 52 SYRELDTRADRLAAGFQKLG-IQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHR 110
Query: 131 ESEISRQIQLSNP---VIAFATS---------SVVHKLAKLKHRTILIDSPEFDSMTMSW 178
SEI+ + + +I A S V KL LK+ + ++ EF + +
Sbjct: 111 SSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEF--LPLED 168
Query: 179 NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVML 238
+ +V SDVA + S G+TG K + TH + ++ S S V L
Sbjct: 169 LHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHS-TVYL 227
Query: 239 FTMPYFHIY--------GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP 290
+P H Y G+ + L + F L +E +VT A+ PP
Sbjct: 228 AALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL------IEREKVTITALVPP 281
Query: 291 IVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350
+ + S+ DLSSL+ + G A + + F L Q +G+ E
Sbjct: 282 LAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYT 340
Query: 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVT 410
R P+E +S E+++ D D + PG+ G L RGP ++GY E
Sbjct: 341 RLDDPEEIIVNTQGKPMSPYDESRVWDDHDRD-VKPGETGHLLTRGPYTIRGYYKAEEHN 399
Query: 411 SATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAA 470
+A+ DG+ RTGD+ + DG++ + R KD I G +VA E+E+ LL+H V DAA
Sbjct: 400 AASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAA 459
Query: 471 VI 472
++
Sbjct: 460 MV 461
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 135/282 (47%), Gaps = 18/282 (6%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC 252
D+A+IM++SGTTG K V T RN A+ A S L +P +HI GL
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYAS-AIGCKESLGFDRDTNWLSVLPIYHISGLSVL 222
Query: 253 FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312
RA T ++ +F+ + +L ++ R+TH ++ P + + + G + Y+L + +
Sbjct: 223 LRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNL---QKI 279
Query: 313 ACGAAPLGKDTI-MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR-RWGSTGRLSAG 370
G A L I A P + ++G+TE T F T P+ R + G SA
Sbjct: 280 LLGGAKLSATMIETALQYNLP---IYNSFGMTE-TCSQFLTATPEMLHARPDTVGMPSAN 335
Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430
++ KI +P GEL I+G +M GY+ ++T +G+ TGD+ ID
Sbjct: 336 VDVKIKNPNKEG------HGELMIKGANVMNGYLYPTDLTGT--FENGYFNTGDIAEIDH 387
Query: 431 DGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
+G++ I DR KDLI G + P ++E + ++DA +
Sbjct: 388 EGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCV 429
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 113/422 (26%), Positives = 176/422 (41%), Gaps = 32/422 (7%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
S+ E R + LA+ Q + + + D V N E + F+L LG + A P +
Sbjct: 52 SYRELDTRADRLAAGFQKLG-IQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHR 110
Query: 131 ESEISRQIQLSNP---VIAFATS---------SVVHKLAKLKHRTILIDSPEFDSMTMSW 178
SEI+ + + +I A S V KL LK+ + ++ EF + +
Sbjct: 111 SSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEF--LPLED 168
Query: 179 NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVML 238
+ +V SDVA + S G+TG K + TH + ++ S S V L
Sbjct: 169 LHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHS-TVYL 227
Query: 239 FTMPYFHIY--------GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP 290
+P H Y G+ + L + F L +E +VT A+ PP
Sbjct: 228 AALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL------IEREKVTITALVPP 281
Query: 291 IVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350
+ S+ DLSSL+ + G A + + F L Q +G E
Sbjct: 282 LAXVWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGXAEGLVNYT 340
Query: 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVT 410
R P+E S E+++ D D + PG+ G L RGP ++GY E
Sbjct: 341 RLDDPEEIIVNTQGKPXSPYDESRVWDDHDRD-VKPGETGHLLTRGPYTIRGYYKAEEHN 399
Query: 411 SATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAA 470
+A+ DG+ RTGD+ + DG++ + R KD I G +VA E+E+ LL+H V DAA
Sbjct: 400 AASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAA 459
Query: 471 VI 472
+
Sbjct: 460 XV 461
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 110/424 (25%), Positives = 189/424 (44%), Gaps = 28/424 (6%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
++S+ E R + +LA+ L L K DTA V N E I++F+LL GV++ A
Sbjct: 55 QLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYS 113
Query: 129 NTESEISRQIQLSNPVI--------AFATSSVVHKLAKLK---HRTILIDSPEFDSMTMS 177
+ + E++ I+ P + F+ + + L + ++++ D +
Sbjct: 114 HRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLD 173
Query: 178 W---NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP 234
W ++ +D + +VA S G+TG K + TH + +V +S A S
Sbjct: 174 WIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRAS-AEICGLNSN 232
Query: 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMM--LKAVEEFRVTHAAVTPPIV 292
+L +P H + L L V+ + + + ++ +V A++ P V
Sbjct: 233 TRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAV 292
Query: 293 VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV---LVQAYGLTESTAGV 349
+ + + + SL+ + G A + + A + P+V+ L Q +G+ E
Sbjct: 293 IMWLEKAAQYKDQIQSLKLLQVGGASFPE----SLARQVPEVLNCKLQQVFGMAEGLVNY 348
Query: 350 FRTVGPDECRRWGSTGR-LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPE 408
R DE + + + GR +S+ E KIVD E +P G+ G L+ RGP GY PE
Sbjct: 349 TRLDDSDE-QIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPE 406
Query: 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVAD 468
S D + +GDL DG L +V R+KD I G ++A E+E L+L H EV
Sbjct: 407 HNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMH 466
Query: 469 AAVI 472
AA++
Sbjct: 467 AALV 470
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 140/299 (46%), Gaps = 34/299 (11%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF 250
D A ++Y+SGTTG KG ++ R L A + A + + V++ +P FH++GL
Sbjct: 154 DGDPALVVYTSGTTGPPKGAVIPRRAL-ATTLDALADAWQWTGEDVLVQGLPLFHVHGLV 212
Query: 251 FCFRAAALMETAVV-MQRFDLKMMLKAVEE-----FRVT----HAAVTPPIVVAMSKGGS 300
+V + RF + + + + F V A T P ++K
Sbjct: 213 LGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYHRIAETLPADPELAKA-- 270
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
L+ + G+A L A+ + V ++ YG+TE+ +V D R
Sbjct: 271 -----LAGARLLVSGSAALPVHDHERIAAATGRRV-IERYGMTETLMNT--SVRADGEPR 322
Query: 361 WGSTGRLSAGLEAKIVDPE-------TGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSAT 413
G+ G G+E ++V+ + G+S+ GE+ +RGP + Y+ P+ T+A
Sbjct: 323 AGTVGVPLPGVELRLVEEDGTPIAALDGESV-----GEIQVRGPNLFTEYLNRPDATAAA 377
Query: 414 LLPDGWMRTGDLCYIDEDGFLFIVDR-LKDLIKYKGYQVAPAELEHLLLSHREVADAAV 471
DG+ RTGD+ D DG++ IV R DLIK GY++ E+E+ LL H EV +AAV
Sbjct: 378 FTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAV 436
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 112/440 (25%), Positives = 183/440 (41%), Gaps = 38/440 (8%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D++A+I+ L S+ E + ++LA L+ + +TA V N E+ I +F+LL
Sbjct: 40 DSIAVIDGERQL--SYRELNQAADNLACSLRR-QGIKPGETALVQLGNVAELYITFFALL 96
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFAT------------SSVVHKLAKLKHRTI 164
LGV A + SE++ P + A ++ V + + ++ +
Sbjct: 97 KLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQL 156
Query: 165 LIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS 224
L DS E + + + +VA S GTTG K + TH + +V S
Sbjct: 157 LNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRS 216
Query: 225 FASSPKRVSPAVMLFTMPYFHIY-----GLFFCFRAAALMETAVVMQRFDLKMMLKAVEE 279
+ L +P H Y G F A T V+ + +E+
Sbjct: 217 VEIC-QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGG---TVVLAADPSATLCFPLIEK 272
Query: 280 FRVTHAAVTPPIV----VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV 335
+V A+ PP V A+ +G S L+SL+ + G A L A++ P +
Sbjct: 273 HQVNVTALVPPAVSLWLQALIEGESR--AQLASLKLLQVGGARLSA----TLAARIPAEI 326
Query: 336 ---LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
L Q +G+ E R E + E + D E G+ LP G+ G L
Sbjct: 327 GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAE-GNPLPQGEVGRL 385
Query: 393 SIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVA 452
RGP +GY P+ ++ +G+ +GDL ID +G++ + R KD I G ++A
Sbjct: 386 MTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIA 445
Query: 453 PAELEHLLLSHREVADAAVI 472
E+E+LLL H V AA++
Sbjct: 446 AEEIENLLLRHPAVIYAALV 465
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 44/322 (13%)
Query: 168 SPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS 227
SP F+ T ++K+E D+ + +SSGT G K M+ H N A
Sbjct: 210 SPIFERPTGEVSTKNE---------DICLVYFSSGTAGFPK--MVEHDNTYPLGHILTAK 258
Query: 228 SPKRVSPAVMLFTMP--------YFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEE 279
+ V + +T+ + +YG + A + + RF+ K ML+ +
Sbjct: 259 YWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYD----YDRFEAKNMLEKASK 314
Query: 280 FRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339
+ VT PP + Y+ S+L+ PL + F +F + L++
Sbjct: 315 YGVT-TFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFL-EFTGIKLMEG 372
Query: 340 YGLTES--TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
+G TE+ T F + P + GS G+ + G + +++D + G G+EGE+ I
Sbjct: 373 FGQTETVVTIATFPWMEP----KPGSIGKPTPGYKIELMDRD-GRLCEVGEEGEIVI--- 424
Query: 398 TIMKG--------YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGY 449
M+G Y +PE T T DG+ TGD+ ++DEDG+L+ V R D+IK GY
Sbjct: 425 NTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGY 483
Query: 450 QVAPAELEHLLLSHREVADAAV 471
+V P E+E L+ H V + A+
Sbjct: 484 KVGPFEVESALIQHPAVLECAI 505
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 116/435 (26%), Positives = 194/435 (44%), Gaps = 31/435 (7%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL GLR++ +E R ++A+ L + L V++ NS ++ I
Sbjct: 14 RAPDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAIL 72
Query: 114 SLLSLGVIISPANPVNTESEISRQI---QLSNPVIAFA--TSSVVHKLAKLKHRTILIDS 168
+L LG + + NP +E++ I +++ VIA + + + R I +
Sbjct: 73 ALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS-GARIIFLGD 131
Query: 169 PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228
D S+ E + + Q A I Y+SGTTG K ++ R + V F S+
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQP--AFIFYTSGTTGLPKAAIIPQRAAESRVL--FMST 187
Query: 229 P---KRVSPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVEEFRVTH 284
+ V+L MP +H+ G F AA AL T VV++ F L+ V++ +VT
Sbjct: 188 QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS 247
Query: 285 AAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342
TP + A++ + G L SL V A + D ++ + V AYG
Sbjct: 248 LFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM-PDAVLETVHQHLPGEKVNAYGT 306
Query: 343 TESTAGVFRTVGPDECRRWGSTGRLSAGL--EAKIVDPETG--DSLPPGKEGELSIRGP- 397
TE+ ++ R+ + ++ G E +IV G + + G+EGEL +
Sbjct: 307 TEAMNSLY-------MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASD 359
Query: 398 TIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELE 457
+ GY+ +P+ T A L DGW RT D+ +G + I+ R+ D+I G + P+E+E
Sbjct: 360 SAFVGYLNQPQAT-AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418
Query: 458 HLLLSHREVADAAVI 472
+L + V + VI
Sbjct: 419 RVLGTAPGVTEVVVI 433
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 116/435 (26%), Positives = 193/435 (44%), Gaps = 31/435 (7%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL GLR++ +E R ++A+ L + L V++ NS ++ I
Sbjct: 14 RAPDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAIL 72
Query: 114 SLLSLGVIISPANPVNTESEISRQI---QLSNPVIAFA--TSSVVHKLAKLKHRTILIDS 168
+L LG + + NP +E++ I +++ VIA + + + R I +
Sbjct: 73 ALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS-GARIIFLGD 131
Query: 169 PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228
D S+ E + + Q A I Y+SGTTG K ++ R + V F S+
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQP--AFIFYTSGTTGLPKAAIIPQRAAESRVL--FMST 187
Query: 229 P---KRVSPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVEEFRVTH 284
+ V+L MP +H+ G F AA AL T VV++ F L+ V++ +VT
Sbjct: 188 QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTS 247
Query: 285 AAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342
TP + A++ + G L SL V A + D ++ + V YG
Sbjct: 248 LFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM-PDAVLETVHQHLPGEKVNIYGT 306
Query: 343 TESTAGVFRTVGPDECRRWGSTGRLSAGL--EAKIVDPETG--DSLPPGKEGELSIRGP- 397
TE+ ++ R+ + ++ G E +IV G + + G+EGEL +
Sbjct: 307 TEAMNSLY-------MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASD 359
Query: 398 TIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELE 457
+ GY+ +PE T A L DGW RT D+ +G + I+ R+ D+I G + P+E+E
Sbjct: 360 SAFVGYLNQPEAT-AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418
Query: 458 HLLLSHREVADAAVI 472
+L + V + VI
Sbjct: 419 RVLGTAPGVTEVVVI 433
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/431 (22%), Positives = 181/431 (41%), Gaps = 41/431 (9%)
Query: 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
L +F E + + A+ L L + D V+ E ++ + G+I P
Sbjct: 72 LMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTI 131
Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT------ILIDSPEFDSMTMSWNSK 181
++I ++Q+S A V+ ++ + +L+ D N K
Sbjct: 132 QMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWL---NFK 188
Query: 182 HELDRAKVCQ-------SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP 234
L+ A + +AI ++SGT+G K M H + + + + +
Sbjct: 189 KLLNEASTTHHCVETGSQEASAIYFTSGTSGLPK--MAEHSYSSLGLKAKMDAGWTGLQA 246
Query: 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVV--------MQRFDLKMMLKAVEEFRVTHAA 286
+ +++T+ C +LME + + +FD ++LK + + + +
Sbjct: 247 SDIMWTISDTGWILNILC----SLMEPWALGACTFVHLLPKFDPLVILKTLSSYPI-KSM 301
Query: 287 VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST 346
+ PIV M Y L+ L +T+ + ++ + + ++YG TE+
Sbjct: 302 MGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQ-TGLDIRESYGQTET- 359
Query: 347 AGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP-----TIMK 401
G+ V + G G ++ + +I+D + G+ LPPG EG++ IR I
Sbjct: 360 -GLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFS 417
Query: 402 GYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLL 461
GYV P+ T+A + D W+ GD DEDG+ + R D+I GY++ P+E+E+ L+
Sbjct: 418 GYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALM 476
Query: 462 SHREVADAAVI 472
H V + AVI
Sbjct: 477 EHPAVVETAVI 487
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/431 (22%), Positives = 181/431 (41%), Gaps = 41/431 (9%)
Query: 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
L +F E + + A+ L L + D V+ E ++ + G+I P
Sbjct: 72 LMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTI 131
Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT------ILIDSPEFDSMTMSWNSK 181
++I ++Q+S A V+ ++ + +L+ D N K
Sbjct: 132 QMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWL---NFK 188
Query: 182 HELDRAKVCQ-------SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP 234
L+ A + +AI ++SGT+G K M H + + + + +
Sbjct: 189 KLLNEASTTHHCVETGSQEASAIYFTSGTSGLPK--MAEHSYSSLGLKAKMDAGWTGLQA 246
Query: 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVV--------MQRFDLKMMLKAVEEFRVTHAA 286
+ +++T+ C +LME + + +FD ++LK + + + +
Sbjct: 247 SDIMWTISDTGWILNILC----SLMEPWALGACTFVHLLPKFDPLVILKTLSSYPI-KSM 301
Query: 287 VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST 346
+ PIV M Y L+ L +T+ + ++ + + ++YG TE+
Sbjct: 302 MGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQ-TGLDIRESYGQTET- 359
Query: 347 AGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP-----TIMK 401
G+ V + G G ++ + +I+D + G+ LPPG EG++ IR I
Sbjct: 360 -GLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFS 417
Query: 402 GYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLL 461
GYV P+ T+A + D W+ GD DEDG+ + R D+I GY++ P+E+E+ L+
Sbjct: 418 GYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALM 476
Query: 462 SHREVADAAVI 472
H V + AVI
Sbjct: 477 EHPAVVETAVI 487
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 115/435 (26%), Positives = 193/435 (44%), Gaps = 31/435 (7%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL GLR++ +E R ++A+ L + L V++ NS ++ I
Sbjct: 14 RAPDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAIL 72
Query: 114 SLLSLGVIISPANPVNTESEISRQI---QLSNPVIAFA--TSSVVHKLAKLKHRTILIDS 168
+L LG + + NP +E++ I +++ VIA + + + R I +
Sbjct: 73 ALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS-GARIIFLGD 131
Query: 169 PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228
D S+ E + + Q A I Y+SGTTG K ++ R + V F S+
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQP--AFIFYTSGTTGLPKAAIIPQRAAESRVL--FMST 187
Query: 229 P---KRVSPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVEEFRVTH 284
+ V+L MP +H+ G F AA AL T VV++ F L+ V++ +VT
Sbjct: 188 QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS 247
Query: 285 AAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342
TP + A++ + G L SL V A + D ++ + V YG
Sbjct: 248 LFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM-PDAVLETVHQHLPGEKVNGYGT 306
Query: 343 TESTAGVFRTVGPDECRRWGSTGRLSAGL--EAKIVDPETG--DSLPPGKEGELSIRGP- 397
TE+ ++ R+ + ++ G E +IV G + + G+EGEL +
Sbjct: 307 TEAMNSLY-------MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASD 359
Query: 398 TIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELE 457
+ GY+ +P+ T A L DGW RT D+ +G + I+ R+ D+I G + P+E+E
Sbjct: 360 SAFVGYLNQPQAT-AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418
Query: 458 HLLLSHREVADAAVI 472
+L + V + VI
Sbjct: 419 RVLGTAPGVTEVVVI 433
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 115/435 (26%), Positives = 193/435 (44%), Gaps = 31/435 (7%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL GLR++ +E R ++A+ L + L V++ NS ++ I
Sbjct: 14 RAPDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAIL 72
Query: 114 SLLSLGVIISPANPVNTESEISRQI---QLSNPVIAFA--TSSVVHKLAKLKHRTILIDS 168
+L LG + + NP +E++ I +++ VIA + + + R I +
Sbjct: 73 ALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS-GARIIFLGD 131
Query: 169 PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228
D S+ E + + Q A I Y+SGTTG K ++ R + V F S+
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQP--AFIFYTSGTTGLPKAAIIPQRAAESRVL--FMST 187
Query: 229 P---KRVSPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVEEFRVTH 284
+ V+L MP +H+ G F AA AL T VV++ F L+ V++ +VT
Sbjct: 188 QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS 247
Query: 285 AAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342
TP + A++ + G L SL V A + D ++ + V YG
Sbjct: 248 LFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM-PDAVLETVHQHLPGEKVNIYGT 306
Query: 343 TESTAGVFRTVGPDECRRWGSTGRLSAGL--EAKIVDPETG--DSLPPGKEGELSIRGP- 397
TE+ ++ R+ + ++ G E +IV G + + G+EGEL +
Sbjct: 307 TEAMNSLY-------MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASD 359
Query: 398 TIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELE 457
+ GY+ +P+ T A L DGW RT D+ +G + I+ R+ D+I G + P+E+E
Sbjct: 360 SAFVGYLNQPQAT-AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418
Query: 458 HLLLSHREVADAAVI 472
+L + V + VI
Sbjct: 419 RVLGTAPGVTEVVVI 433
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 115/435 (26%), Positives = 193/435 (44%), Gaps = 31/435 (7%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL GLR++ +E R ++A+ L + L V++ NS ++ I
Sbjct: 14 RAPDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAIL 72
Query: 114 SLLSLGVIISPANPVNTESEISRQI---QLSNPVIAFA--TSSVVHKLAKLKHRTILIDS 168
+L LG + + NP +E++ I +++ VIA + + + R I +
Sbjct: 73 ALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS-GARIIFLGD 131
Query: 169 PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228
D S+ E + + Q A I Y+SGTTG K ++ R + V F S+
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQP--AFIFYTSGTTGLPKAAIIPQRAAESRVL--FMST 187
Query: 229 P---KRVSPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVEEFRVTH 284
+ V+L MP +H+ G F AA AL T VV++ F L+ V++ +VT
Sbjct: 188 QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS 247
Query: 285 AAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342
TP + A++ + G L SL V A + D ++ + V YG
Sbjct: 248 LFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM-PDAVLETVHQHLPGEKVNIYGT 306
Query: 343 TESTAGVFRTVGPDECRRWGSTGRLSAGL--EAKIVDPETG--DSLPPGKEGELSIRGP- 397
TE+ ++ R+ + ++ G E +IV G + + G+EGEL +
Sbjct: 307 TEAMNSLY-------MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASD 359
Query: 398 TIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELE 457
+ GY+ +P+ T A L DGW RT D+ +G + I+ R+ D+I G + P+E+E
Sbjct: 360 SAFVGYLNQPQAT-AEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIE 418
Query: 458 HLLLSHREVADAAVI 472
+L + V + VI
Sbjct: 419 RVLGTAPGVTEVVVI 433
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 132/299 (44%), Gaps = 22/299 (7%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNL---TAAVASSFASSPKRVSPAVMLFTMPY-- 243
V + + I+Y+SG+TG KGV ++ NL T + + F S ++ L P+
Sbjct: 140 VKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKI----FLNQAPFSF 195
Query: 244 -FHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV--VAMSKGGS 300
+ L+ C ++ + K++ + +++ + TP V M G S
Sbjct: 196 DLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFS 255
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT-VGPDECR 359
D L +T L A +FPK + YG TE+T V + D
Sbjct: 256 QD--LLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313
Query: 360 RWGS--TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD 417
R S G + I+D E G LP G++GE+ I GP++ +GY+GEPE+T
Sbjct: 314 RSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSH 372
Query: 418 --GW-MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473
W RTGD +I +DG +F RL IK GY++ E+E + + V A VIP
Sbjct: 373 EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIP 430
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 146/344 (42%), Gaps = 49/344 (14%)
Query: 167 DSPEFDSMTMSW-NSKHELDRA--KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS 223
D+PE ++ +W + E D A + +D+A + Y+SG+T +GV++THR + A + +
Sbjct: 147 DNPELHVLSHAWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRA 206
Query: 224 SFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLK----MMLKAVE 278
K + +P++H GL F A + ++ D LK +
Sbjct: 207 ISHDGIKLRPGDRCVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLIS 266
Query: 279 EFRVTHAAVTPPIVVAMSKGGSTDG----YDLSSLETVACGAAPLGKDTIMAFASKFPKV 334
+ R T +V PP + + + DLS GA P+ + + FA F +V
Sbjct: 267 KNRGT-VSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQV 325
Query: 335 -----VLVQAYGLTESTAGV----------FRTVGPDECRRWGSTGRLSAGLEAKIVDP- 378
YGL E+ V V D G ++ G E + V
Sbjct: 326 NFDNKTFXPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKA--VAPGAETRAVSTF 383
Query: 379 -ETGDSLP------------PGKE---GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422
G +LP P E G + I GP++ GY G+ +V+ + GW+ T
Sbjct: 384 VNCGKALPEHGIEIRNEAGXPVAERVVGHICISGPSLXSGYFGD-QVSQDEIAATGWLDT 442
Query: 423 GDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREV 466
GDL Y+ DG+L++ R+KDLI +G + P ++E++ E+
Sbjct: 443 GDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEI 485
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 116/435 (26%), Positives = 185/435 (42%), Gaps = 31/435 (7%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL GLR++ +E R ++A+ L + L V++ NS ++ I
Sbjct: 14 RAPDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAIL 72
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILID 167
+L LG + + NP +E++ I+ A +V ++A R I +
Sbjct: 73 ALHRLGAVPALLNPRLKSAELAELIKRGEXTAAVI--AVGRQVADAIFQSGSGARIIFLG 130
Query: 168 SPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA-SSFA 226
D S+ E + + Q A I Y+SGTTG K ++ R + V S
Sbjct: 131 DLVRDGEPYSYGPPIEDPQREPAQP--AFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQ 188
Query: 227 SSPKRVSPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
+ V+L P +H+ G F AA AL T VV++ F L+ V++ +VT
Sbjct: 189 VGLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSL 248
Query: 286 AVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343
TP + A++ + G L SL V A D ++ + V YG T
Sbjct: 249 FATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATX-PDAVLETVHQHLPGEKVNIYGTT 307
Query: 344 ESTAGVFRTVGPDECRRWGSTGRLSA-GL--EAKIVDPETG--DSLPPGKEGELSIRGP- 397
E+ ++ R TG A G E +IV G + + G+EGEL +
Sbjct: 308 EAXNSLYX--------RQPKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASD 359
Query: 398 TIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELE 457
+ GY+ +P+ T A L DGW RT D+ +G + I+ R+ D I G + P+E+E
Sbjct: 360 SAFVGYLNQPQAT-AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIE 418
Query: 458 HLLLSHREVADAAVI 472
+L + V + VI
Sbjct: 419 RVLGTAPGVTEVVVI 433
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/427 (23%), Positives = 168/427 (39%), Gaps = 38/427 (8%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G R ++ + R ++S+A+++ ++ L+K+ V + ++ + +L G P +
Sbjct: 27 GERRTYGQLKRDSDSIAAFIDSLALLAKS-PVLVFGAQTYDMLATFVALTKSGHAYIPVD 85
Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMT---MSWNSKHE 183
+ I I+++ P + A + + L+ E +S M + H
Sbjct: 86 VHSAPERILAIIEIAKPSLIIAIEEFPLTIEGIS----LVSLSEIESAKLAEMPYERTH- 140
Query: 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA----AVASSFASSPKRVSPAVMLF 239
V D I+++SGTTG+ KGV ++H NL + + + PK+ ML
Sbjct: 141 ----SVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQ---MLA 193
Query: 240 TMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMMLKAVEEFRVTHAAVTPPIVVAMS 296
PY + + AL T + + D K + + + V TP
Sbjct: 194 QPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAM 253
Query: 297 KGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
+ +L L T +FP ++ AYG TE+T +
Sbjct: 254 LSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAI---- 309
Query: 357 ECRRW--GSTGRLSAGLE-----AKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEV 409
E R + RL G I+D E G L G++GE+ + GP + KGY+ PE
Sbjct: 310 EITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEK 368
Query: 410 TSA---TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREV 466
T+ T TGD+ + ED L RL IKY GY++ ++ L V
Sbjct: 369 TAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMV 428
Query: 467 ADAAVIP 473
A A +P
Sbjct: 429 ASAVAVP 435
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 106/430 (24%), Positives = 184/430 (42%), Gaps = 47/430 (10%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
++ E R AS L+ + + + ++ +++ +P+ + L GV+ AN + T
Sbjct: 50 TYGELEERARRFASALRTLG-VHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLT 108
Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFD--SMTMSWNSKHELDRAK 188
++ + S+ A+ ++V + T ++S E D + +S + E A
Sbjct: 109 PADYVYMLTHSHARAVIASGALVQNV------TQALESAEHDGCQLIVSQPRESEPRLAP 162
Query: 189 VCQS-----------------DVAAIMYSSGTTGRVKGVMLTHRNL--TAAVAS----SF 225
+ + D+A +YSSG+TG+ KG + TH NL TA + +
Sbjct: 163 LFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI 222
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTH 284
A + S A + F Y GL F A TA++M +R + + E R T
Sbjct: 223 AENDVVFSAAKLFFA--YGLGNGLTFPLSVGA---TAILMAERPTADAIFARLVEHRPTV 277
Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
P + M + ++ L ++ F + F +L G TE
Sbjct: 278 FYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEIL-DGIGSTE 336
Query: 345 STAGVFRT--VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
+F + G E +G+TGR G E ++ D E G ++P G+ G+L I+GP+
Sbjct: 337 MLH-IFLSNRAGAVE---YGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVM 391
Query: 403 YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLS 462
Y E + AT L + W+R+GD +G R D++K G V+P E+E +L+
Sbjct: 392 YWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ 450
Query: 463 HREVADAAVI 472
H V +AAV+
Sbjct: 451 HDAVLEAAVV 460
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 128/297 (43%), Gaps = 34/297 (11%)
Query: 197 IMYSSGTTGRVKGVMLTHRNL---TAAVASSFASSPKRV--SPAVMLFTMPYFHIYGLFF 251
I+Y+SG+TG KGV +T+ L T F +V + A F + IY
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLV 208
Query: 252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
++ ++ + DL ++E+ + TP S L +++T
Sbjct: 209 TGGTLWAIDKDMIARPKDL---FASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKT 265
Query: 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV------------FRTVGPDECR 359
L + +FPK ++ YG TE+T V ++++ C+
Sbjct: 266 FLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCK 325
Query: 360 RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTS-ATLLPDG 418
S RL ++ E G P G++GE+ I GP++ GY+G PE+T A + DG
Sbjct: 326 ---SDCRL-------LIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDG 375
Query: 419 W--MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473
+TGD Y+ E+G LF RL IK GY++ E+EH L + V A ++P
Sbjct: 376 ERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVP 431
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 128/297 (43%), Gaps = 34/297 (11%)
Query: 197 IMYSSGTTGRVKGVMLTHRNL---TAAVASSFASSPKRV--SPAVMLFTMPYFHIYGLFF 251
I+Y+SG+TG KGV +T+ L T F +V + A F + IY
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLV 208
Query: 252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
++ ++ + DL ++E+ + TP S L +++T
Sbjct: 209 TGGTLWAIDKDMIARPKDL---FASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKT 265
Query: 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV------------FRTVGPDECR 359
L + +FPK ++ YG TE+T V ++++ C+
Sbjct: 266 FLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCK 325
Query: 360 RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTS-ATLLPDG 418
S RL ++ E G P G++GE+ I GP++ GY+G PE+T A + DG
Sbjct: 326 ---SDCRL-------LIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDG 375
Query: 419 W--MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473
+TGD Y+ E+G LF RL IK GY++ E+EH L + V A ++P
Sbjct: 376 ERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVP 431
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/473 (24%), Positives = 189/473 (39%), Gaps = 64/473 (13%)
Query: 39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTA 98
S VD V LRA L + + +N ++ + + ++A+ LQ D
Sbjct: 12 SLVDVVR-LRA-LHSPNKKSCTFLNKELEETXTYEQLDQHAKAIAATLQ-AEGAKPGDRV 68
Query: 99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTES---EISRQIQLSNPVIAFATSSVVHK 155
+L + + + L G I P P E + R + S PVI + + K
Sbjct: 69 LLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIADHIKK 128
Query: 156 LAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQ------SDVAAIMYSSGTTGRVKG 209
+ T +P+F + EL+R+ Q +D+A + Y+SG+T KG
Sbjct: 129 FTADELNT----NPKFLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKG 184
Query: 210 VMLTHRNLTAAVASSFASSPKRVSPAVMLFT-MPYFHIYGLFFCFRAAALME-TAVVMQR 267
V ++H NL + F S + ++F+ +P H GL C A+
Sbjct: 185 VXVSHHNLLDNLNKIFTSF--HXNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSP 242
Query: 268 FDLKM----MLKAVEEFRVTHAA---VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLG 320
F LK + +++ T + V + +G DLSS T GA P+
Sbjct: 243 FSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVR 302
Query: 321 KDTIMAFASKFP-----KVVLVQAYGLTESTAGV--------FRT------------VGP 355
++T F F K YGL E+T V ++T V
Sbjct: 303 EETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHF 362
Query: 356 DECRRWGSTGRLSAG---LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTS- 411
+ GS +S+G E KI+DP+T + GE+ ++ ++ KGY +PE T
Sbjct: 363 ADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRH 422
Query: 412 --ATLLPDG-----WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELE 457
A + D ++RTGDL ++ E+ L++ R+KDLI G P ++E
Sbjct: 423 AFAGKIKDDERSAIYLRTGDLGFLHENE-LYVTGRIKDLIIIYGKNHYPQDIE 474
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 115/478 (24%), Positives = 195/478 (40%), Gaps = 88/478 (18%)
Query: 24 SLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLA 83
+LR L P D + +DY +D D VA+ +++S+ RRT ++A
Sbjct: 29 ALRACARLQPHDPAFTFMDYE---------QDWDGVAIT-------LTWSQLYRRTLNVA 72
Query: 84 SYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN---TESEISRQIQ 139
Q ++R S D + + +E + + L G I P + T+ +
Sbjct: 73 ---QELSRCGSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLS 129
Query: 140 LSNPVIAFATSSVVHKLAKLKHRTILIDSP---EFDSMTMSWNSKHELDRAKVCQSDVAA 196
S+PV TSS V + + R P E D + + + + + + A
Sbjct: 130 DSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPST--AY 187
Query: 197 IMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSP--AVMLFTMPYFHIYGLFF 251
+ Y+SG+T GV+++H+N+ + S + + + P + ++ +P++H GL
Sbjct: 188 LQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVI 247
Query: 252 CFRA-------AALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD-- 302
A A L +QR M L A +F AA P ++ +TD
Sbjct: 248 GICAPILGGYPAVLTSPVSFLQRPARWMHLMA-SDFHAFSAA--PNFAFELAARRTTDDD 304
Query: 303 --GYDLSSLETVACGAAPLGKDTIMAFASKFPKV-----VLVQAYGLTESTAGVFRTVGP 355
G DL ++ T+ G+ + TI FA +F + V+ +Y L E+T V T P
Sbjct: 305 MAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYV-ATSKP 363
Query: 356 DE-------------------CRRWGSTGRLSAGLE----AKIVDPETGDSLPPGKEGEL 392
+ C G+T +S L +IVD +T P G GE+
Sbjct: 364 GQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEI 423
Query: 393 SIRGPTIMKGYVGEPE----------VTSATLLPDG-WMRTGDLCYIDEDGFLFIVDR 439
+ G + GY +P+ VT + P+G W+RTGD ++ DG +FI+ R
Sbjct: 424 WVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFV-TDGKMFIIGR 480
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 115/478 (24%), Positives = 192/478 (40%), Gaps = 88/478 (18%)
Query: 24 SLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLA 83
+LR L P D + DY +D D VA+ +++S+ RRT ++A
Sbjct: 29 ALRACARLQPHDPAFTFXDYE---------QDWDGVAIT-------LTWSQLYRRTLNVA 72
Query: 84 SYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN---TESEISRQIQ 139
Q ++R S D + + +E + + L G I P + T+ +
Sbjct: 73 ---QELSRCGSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLS 129
Query: 140 LSNPVIAFATSSVVHKLAKLKHRTILIDSP---EFDSMTMSWNSKHELDRAKVCQSDVAA 196
S+PV TSS V + + R P E D + + + + + + A
Sbjct: 130 DSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPST--AY 187
Query: 197 IMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSP--AVMLFTMPYFHIYGLFF 251
+ Y+SG+T GV+ +H+N+ + S + + + P + ++ +P++H GL
Sbjct: 188 LQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTDGIPPPNSALVSWLPFYHDXGLVI 247
Query: 252 CFRA-------AALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD-- 302
A A L +QR L A +F AA P ++ +TD
Sbjct: 248 GICAPILGGYPAVLTSPVSFLQRPARWXHLXA-SDFHAFSAA--PNFAFELAARRTTDDD 304
Query: 303 --GYDLSSLETVACGAAPLGKDTIMAFASKFPKV-----VLVQAYGLTESTAGVFRTVGP 355
G DL ++ T+ G+ + TI FA +F + V+ +YGL E+T V T P
Sbjct: 305 XAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYGLAEATVYV-ATSKP 363
Query: 356 DE-------------------CRRWGSTGRLSAGLE----AKIVDPETGDSLPPGKEGEL 392
+ C G+T +S L +IVD +T P G GE+
Sbjct: 364 GQPPETVDFDTESLSAGHAKPCAGGGATSLISYXLPRSPIVRIVDSDTCIECPDGTVGEI 423
Query: 393 SIRGPTIMKGYVGEPE----------VTSATLLPDG-WMRTGDLCYIDEDGFLFIVDR 439
+ G + GY +P+ VT + P+G W+RTGD ++ DG FI+ R
Sbjct: 424 WVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFV-TDGKXFIIGR 480
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 133/295 (45%), Gaps = 31/295 (10%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHR---NLTAAVASSFASSPK-RVSP-AVMLFTMPYFHI 246
+D+A ++Y+SGTTG KG ML H+ NL +S + K R+ A + F +
Sbjct: 182 TDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDAS---V 238
Query: 247 YGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
+ +F A + + D + + + +T + P VV + D +
Sbjct: 239 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERI 292
Query: 307 SSLETVACGAAPLGKDTIMAFASKFP-KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG 365
S++T+ G T + +K+ KV + AYG TE+T V E G +
Sbjct: 293 LSIQTLITA----GSATSPSLVNKWKEKVTYINAYGPTETTICATTWVATKET--IGHSV 346
Query: 366 RLSAGLEAK---IVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM-- 420
+ A ++ IVD E G+ GEL I G + +GY PE+TS + + ++
Sbjct: 347 PIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405
Query: 421 ----RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAV 471
+TGD DG + + R+ + +K +G++V E+E +LL H +++ AV
Sbjct: 406 EKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAV 460
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 121/311 (38%), Gaps = 48/311 (15%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA-VASSFAS-SPKRV----SP------AV 236
V DVA +M++SG+TGR KGVM HR LT + +A P V SP +
Sbjct: 211 VGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGL 270
Query: 237 MLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMS 296
LF F + + +E ++ R + M+ + F +V +
Sbjct: 271 ELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNF--------LVDEVP 322
Query: 297 KGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT---- 352
+ + G P + P + L YG ES F T
Sbjct: 323 EA-------FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMG--FTTHHAV 373
Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP---GKEGELSIRGPTIMKGYVGEPEV 409
V D G AG A ++D D L P G GEL + G + GYV P +
Sbjct: 374 VAGDLSGTALPIGVPLAGKRAYVLD----DDLKPAANGALGELYVAGAGLAHGYVSRPAL 429
Query: 410 TSATLLPDGW--------MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLL 461
T+ + D + RTGDL DG L V R D +K +G++V P E+E L+
Sbjct: 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV 489
Query: 462 SHREVADAAVI 472
H V AAV+
Sbjct: 490 GHPAVRQAAVL 500
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 165/430 (38%), Gaps = 42/430 (9%)
Query: 64 SVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIIS 123
+ +G +S+ E N +A LQ K + + S+E+ I +L G
Sbjct: 484 TYSGQTLSYRELDEEANRIARRLQK-HGAGKGSVVALYTKRSLELVIGILGVLKAGAAYL 542
Query: 124 PANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHR--TILIDSPEFDSMTMSWNSK 181
P +P E IS + S + + A+L + T+ ID + +
Sbjct: 543 PVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDD------QTRFEEQ 596
Query: 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS----SFASSPKRVSPAVM 237
+ +D A IMY+SGTTG+ KG + TH N+ V +F+ +S +
Sbjct: 597 ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQDTFLSVSNY 656
Query: 238 LFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
F F Y AA + A D + + + + V T + ++
Sbjct: 657 AFDAFTFDFYA---SMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTD 713
Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV----LVQAYGLTESTAGVFRTV 353
G + L + G G+ + K +++ L+ YG TE T VF T
Sbjct: 714 AGEDW---MKGLRCILFG----GERASVPHVRKALRIMGPGKLINCYGPTEGT--VFATA 764
Query: 354 G-----PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPE 408
PD G+ + I++ E P G GEL I G + KGYV +
Sbjct: 765 HVVHDLPDSISSL-PIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRAD 822
Query: 409 VTSATLLPDGW------MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLS 462
+T + + + RTGDL DG + R+ D +K +G+++ E+E L
Sbjct: 823 LTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQE 882
Query: 463 HREVADAAVI 472
+ V DA V+
Sbjct: 883 YPGVKDAVVV 892
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 124/292 (42%), Gaps = 20/292 (6%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFAS----SPKRV---SPAVMLFTMPYFHIYGL 249
I+Y+SG+TG+ KGV+ T A++F P + + V T + +YG
Sbjct: 261 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 320
Query: 250 FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLS 307
C + E V M + V++ +V P + A+ G + +G D S
Sbjct: 321 LACGATTLMFEG--VPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 378
Query: 308 SLETVACGAAPLGKDTIMAFASKF--PKVVLVQAYGLTESTAGVFRTVGPDECR-RWGST 364
SL + P+ + + K K +V + TE T G T P + GS
Sbjct: 379 SLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE-TGGFMITPLPGAIELKAGSA 437
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSI--RGPTIMKGYVGEPEVTSATLLP--DGWM 420
R G++ +VD E G EG L I P + G+ E T
Sbjct: 438 TRPFFGVQPALVDNE-GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 496
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
+GD DEDG+ +I R+ D++ G+++ AE+E L++H ++A+AAV+
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 124/292 (42%), Gaps = 20/292 (6%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFAS----SPKRV---SPAVMLFTMPYFHIYGL 249
I+Y+SG+TG+ KGV+ T A++F P + + V T + +YG
Sbjct: 261 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 320
Query: 250 FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLS 307
C + E V M + V++ +V P + A+ G + +G D S
Sbjct: 321 LACGATTLMFEG--VPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 378
Query: 308 SLETVACGAAPLGKDTIMAFASKF--PKVVLVQAYGLTESTAGVFRTVGPDECR-RWGST 364
SL + P+ + + K K +V + TE T G T P + GS
Sbjct: 379 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE-TGGFMITPLPGAIELKAGSA 437
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSI--RGPTIMKGYVGEPEVTSATLLP--DGWM 420
R G++ +VD E G EG L I P + G+ E T
Sbjct: 438 TRPFFGVQPALVDNE-GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 496
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
+GD DEDG+ +I R+ D++ G+++ AE+E L++H ++A+AAV+
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 124/292 (42%), Gaps = 20/292 (6%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFAS----SPKRV---SPAVMLFTMPYFHIYGL 249
I+Y+SG+TG+ KGV+ T A++F P + + V T + +YG
Sbjct: 261 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 320
Query: 250 FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLS 307
C + E V M + V++ +V P + A+ G + +G D S
Sbjct: 321 LACGATTLMFEG--VPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 378
Query: 308 SLETVACGAAPLGKDTIMAFASKF--PKVVLVQAYGLTESTAGVFRTVGPDECR-RWGST 364
SL + P+ + + K K +V + TE T G T P + GS
Sbjct: 379 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE-TGGFMITPLPGAIELKAGSA 437
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSI--RGPTIMKGYVGEPEVTSATLLP--DGWM 420
R G++ +VD E G EG L I P + G+ E T
Sbjct: 438 TRPFFGVQPALVDNE-GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 496
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
+GD DEDG+ +I R+ D++ G+++ AE+E L++H ++A+AAV+
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 126/292 (43%), Gaps = 20/292 (6%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFAS----SPKRV---SPAVMLFTMPYFHIYGL 249
I+Y+SG+TG+ KGV+ T A++F P + + V T + +YG
Sbjct: 261 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 320
Query: 250 FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLS 307
C A LM V +M + V++ +V P + A+ G + +G D S
Sbjct: 321 LAC-GATTLMFEGVPNWPTPARM-CQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 378
Query: 308 SLETVACGAAPLGKDTIMAFASKF--PKVVLVQAYGLTESTAGVFRTVGPDECR-RWGST 364
SL + P+ + + K K +V + TE T G T P + GS
Sbjct: 379 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE-TGGFMITPLPGAIELKAGSA 437
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSI--RGPTIMKGYVGEPEVTSATLLP--DGWM 420
R G++ +VD E G EG L I P + G+ E T
Sbjct: 438 TRPFFGVQPALVDNE-GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 496
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
+GD DEDG+ +I R+ D++ G+++ AE+E L++H ++A+AAV+
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 124/292 (42%), Gaps = 20/292 (6%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFAS----SPKRV---SPAVMLFTMPYFHIYGL 249
I+Y+SG+TG+ KGV+ T A++F P + + V T + +YG
Sbjct: 261 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 320
Query: 250 FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLS 307
C + E V M + V++ +V P + A+ G + +G D S
Sbjct: 321 LACGATTLMFEG--VPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 378
Query: 308 SLETVACGAAPLGKDTIMAFASKF--PKVVLVQAYGLTESTAGVFRTVGPDECR-RWGST 364
SL + P+ + + K K +V + TE T G T P + GS
Sbjct: 379 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE-TGGFMITPLPGAIELKAGSA 437
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSI--RGPTIMKGYVGEPEVTSATLLP--DGWM 420
R G++ +VD E G EG L I P + G+ E T
Sbjct: 438 TRPFFGVQPALVDNE-GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 496
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
+GD DEDG+ +I R+ D++ G+++ AE+E L++H ++A+AAV+
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 126/292 (43%), Gaps = 20/292 (6%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFAS----SPKRV---SPAVMLFTMPYFHIYGL 249
I+Y+SG+TG+ KGV+ T A++F P + + V T + +YG
Sbjct: 261 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 320
Query: 250 FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLS 307
C A LM V +M + V++ +V P + A+ G + +G D S
Sbjct: 321 LAC-GATTLMFEGVPNWPTPARM-CQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 378
Query: 308 SLETVACGAAPLGKDTIMAFASKF--PKVVLVQAYGLTESTAGVFRTVGPDECR-RWGST 364
SL + P+ + + K K +V + TE T G T P + GS
Sbjct: 379 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE-TGGFMITPLPGAIELKAGSA 437
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSI--RGPTIMKGYVGEPEVTSATLLP--DGWM 420
R G++ +VD E G EG L I P + G+ E T
Sbjct: 438 TRPFFGVQPALVDNE-GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 496
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
+GD DEDG+ +I R+ D++ G+++ AE+E L++H ++A+AAV+
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 124/292 (42%), Gaps = 20/292 (6%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFAS----SPKRV---SPAVMLFTMPYFHIYGL 249
I+Y+SG+TG+ KGV+ T A++F P + + V T + +YG
Sbjct: 261 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 320
Query: 250 FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLS 307
C + E V M + V++ +V P + A+ G + +G D S
Sbjct: 321 LACGATTLMFEG--VPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 378
Query: 308 SLETVACGAAPLGKDTIMAFASKF--PKVVLVQAYGLTESTAGVFRTVGPDECR-RWGST 364
SL + P+ + + K K +V + TE T G T P + GS
Sbjct: 379 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE-TGGFMITPLPGAIELKAGSA 437
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSI--RGPTIMKGYVGEPEVTSATLLP--DGWM 420
R G++ +VD E G EG L I P + G+ E T
Sbjct: 438 TRPFFGVQPALVDNE-GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 496
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
+GD DEDG+ +I R+ D++ G+++ AE+E L++H ++A+AAV+
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 130/295 (44%), Gaps = 34/295 (11%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-----FASSPKRVSPAVMLFTMPYFHIY 247
D+A ++Y+SGTTG KGV + H N+ A +A + F+ + + + F + I+
Sbjct: 176 DMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSVWEIW 235
Query: 248 GLFFCFRAAALMETAVVMQRFDLK---MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
G F A L VV+ + + L + + VT TP +A+++ G
Sbjct: 236 GAFST--GAEL----VVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGR 289
Query: 305 DLSSLETVACGA----APLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
D+S L V G AP+ + AF P+ LV YG+TE+T +
Sbjct: 290 DVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPR--LVNGYGITETTVFTTFEEITEAYLA 347
Query: 361 WGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD- 417
++ GR ++V + G + PG+ GEL + G + +GY+ PE+T A P+
Sbjct: 348 QDASIIGRALPSFGTRVVG-DDGRDVAPGETGELWLSGAQLAEGYLRRPELT-AEKFPEV 405
Query: 418 ---------GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSH 463
+ RTGDL DG R IK +GY++ +++E + H
Sbjct: 406 TDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRH 460
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 116/284 (40%), Gaps = 29/284 (10%)
Query: 195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC-- 252
A ++Y+SG+TG KGV ++ NL SSF+ + ++ V ++ + G F C
Sbjct: 178 AYLLYTSGSTGTPKGVRVSRHNL-----SSFSDAWGKLIGNVAPKSLELGGV-GKFLCLA 231
Query: 253 -----------FRAAALMETAVVMQRFD-LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
F A AV +R L + + E VTHA + P + + + G
Sbjct: 232 SRAFDVHIGEXFLAWRFGLCAVTGERLSXLDDLPRTFRELGVTHAGIVPSL---LDQTGL 288
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFR-TVGPDECR 359
D L + G T ++S +V LV YG TE T G + PD
Sbjct: 289 VP-EDAPHLVYLGVGGEKXTPRTQQIWSSS-DRVALVNVYGPTEVTIGCSAGRILPDSDT 346
Query: 360 RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTS-ATLLPDG 418
R G A ++ P + + + G GEL I G + GY+ P+ +
Sbjct: 347 R--CIGHPLGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDAKGFCDINGRK 404
Query: 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLS 462
RTGD+ D D + + R + +K +G ++ E+ ++ S
Sbjct: 405 XYRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRS 448
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 133/293 (45%), Gaps = 19/293 (6%)
Query: 197 IMYSSGTTGRVKGVML-THRNLTAAVAS---SFASSPKRV---SPAVMLFTMPYFHIYGL 249
++Y+SG+TG KGV T L A+ + +F + + V + + T + +YG
Sbjct: 267 LLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGP 326
Query: 250 FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLS 307
A + E + ++E +VT V P + + + G + + + L
Sbjct: 327 LLYGCATLVFEGTPAYPNY--SRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLK 384
Query: 308 SLETVACGAAPLGKDTIMAFASKFPK--VVLVQAYGLTESTAGVFRTV-GPDECRRWGST 364
SL + P+ + ++ K K + +V Y TES + + + G + GS
Sbjct: 385 SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSA 444
Query: 365 GRLSAGLEAKIVDPETGDSLPPGK-EGELSIRG--PTIMKG-YVGEPEVTSATLLP-DGW 419
G++A ++DP TG+ L EG L+++ P+ + + L P G+
Sbjct: 445 SFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGY 504
Query: 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
TGD D+DG+++I+ R+ D++ G++++ AE+E ++ VA+ AV+
Sbjct: 505 YFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVV 557
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 111/292 (38%), Gaps = 20/292 (6%)
Query: 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVAS----SFASSPKRVSPAVMLFTMPYFHIYGL 249
+A I +SSGTTGR K + TH +T +FA + + + + F I+G
Sbjct: 166 IAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMRFLVNSPLSFDAATLEIWGA 225
Query: 250 FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309
L + + D ++ + + E A +T + + D L L
Sbjct: 226 LLNGGCCVLND----LGPLDPGVLRQLIGERGADSAWLTASLFNTLV---DLDPDCLGGL 278
Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGS--TGRL 367
+ G L + + P++ LV YG TE+T V D+ G+
Sbjct: 279 RQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKA 338
Query: 368 SAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW-------M 420
AG ++D + P + GE+ G + +GY + T A+ + +
Sbjct: 339 IAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAY 398
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
RTGD DE G L + R +K GY++ LE + D A++
Sbjct: 399 RTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALL 450
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 117/289 (40%), Gaps = 26/289 (8%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFH 245
V Q ++ I SSGTTG+ V T ++ VA S ++ R V +
Sbjct: 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLF 146
Query: 246 IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
GL + A T + + ++ +++FR VTP +++++ G D
Sbjct: 147 TGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD 206
Query: 306 --LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP---DEC-- 358
SSL GA P D +A + + V YGL+E +GP EC
Sbjct: 207 PVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSE-------VMGPGVASECVE 258
Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418
+ G T +I+DPETG+ LP G+ GEL T + T L G
Sbjct: 259 TKDGPT-IWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKEALPIIRYRTRDLTRLLPG 317
Query: 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVA 467
RT + +++ I R D++ +G V P ++E LL R +A
Sbjct: 318 TART--MRRMEK-----ITGRSDDMMIVRGVNVFPTQIEEQLLKQRALA 359
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 101/278 (36%), Gaps = 48/278 (17%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA-VASSFAS-SPKRV----SP------AV 236
V DVA +M++SG+TGR KGVM HR LT + +A P V SP +
Sbjct: 211 VGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGL 270
Query: 237 MLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMS 296
LF F + + +E ++ R + M+ + F +V +
Sbjct: 271 ELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNF--------LVDEVP 322
Query: 297 KGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT---- 352
+ + G P + P + L YG ES F T
Sbjct: 323 EA-------FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMG--FTTHHAV 373
Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP---GKEGELSIRGPTIMKGYVGEPEV 409
V D G AG A ++D D L P G GEL + G + GYV P +
Sbjct: 374 VAGDLSGTALPIGVPLAGKRAYVLD----DDLKPAANGALGELYVAGAGLAHGYVSRPAL 429
Query: 410 TSATLLPDGW--------MRTGDLCYIDEDGFLFIVDR 439
T+ + D + RTGDL DG L V R
Sbjct: 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3S89|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
Length = 436
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 26/215 (12%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHI---Y 247
+ D I SSGTTG ++ + +L S+A+ R V + F Y
Sbjct: 85 KRDGVRIHSSSGTTGNPTVIVHSQHDL-----DSWANLVARCLYXVGIRKTDVFQNSSGY 139
Query: 248 GLF-----FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD 302
G F F + A L V + K +K + +F+ T P + +++ +
Sbjct: 140 GXFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEE 199
Query: 303 GYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD---E 357
G D ++L+T+ GA P + K + + V+AY ++ G GP E
Sbjct: 200 GIDPRETTLKTLVIGAEPHTDEQ----RRKIERXLNVKAY----NSFGXTEXNGPGVAFE 251
Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
C+ +I+DPETG+ +P G+ GEL
Sbjct: 252 CQEQNGXHFWEDCYLVEIIDPETGEPVPEGEIGEL 286
>pdb|2Y27|A Chain A, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
pdb|2Y27|B Chain B, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
Length = 437
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 109/289 (37%), Gaps = 26/289 (8%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFH 245
V Q ++ I SSGTTG+ V T ++ VA S ++ R V +
Sbjct: 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLF 146
Query: 246 IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
GL + A T + + ++ +++FR VTP ++++ G D
Sbjct: 147 TGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIXVTPSYXLSIADEIERQGLD 206
Query: 306 --LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP---DEC-- 358
SSL GA P D +A + + V YGL+E GP EC
Sbjct: 207 PVQSSLRIGIFGAEPWTNDXRVAIEQRX-GIDAVDIYGLSE-------VXGPGVASECVE 258
Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418
+ G T +I+DPETG+ LP G+ GEL T + T L G
Sbjct: 259 TKDGPT-IWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKEALPIIRYRTRDLTRLLPG 317
Query: 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVA 467
RT I R D +G V P ++E LL R +A
Sbjct: 318 TARTXRRXE-------KITGRSDDXXIVRGVNVFPTQIEEQLLKQRALA 359
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From
Burkholderia Pseudomallei
Length = 459
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 282 VTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACG-AAPLGKDTIMAFAS---KFPKVV-- 335
+ H P + +++GG+ G L++ A G AA +G+ T + F S KF +
Sbjct: 208 IRHVEAALPHLYELAQGGTAVGTGLNAHPKFAAGVAAEIGRLTGLPFVSAPNKFEVMAAA 267
Query: 336 --LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK 388
LV A+G ++ A + D RW ++G E I + E G S+ PGK
Sbjct: 268 DALVFAHGALKTVAASLMKIAND--IRWLASGPRCGLGELSIPENEPGSSIMPGK 320
>pdb|3VE0|I Chain I, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Boniface) Bound To 16f6
Length = 298
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 35/143 (24%)
Query: 337 VQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGD-------------- 382
+++ GL +GV + P +RWG +G+ K+V E G+
Sbjct: 48 LKSVGLNLEGSGVSTDI-PSATKRWG----FRSGVPPKVVSYEAGEWAENCYNLEIKKPD 102
Query: 383 ---SLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDR 439
LPP +G +RG + YV + + T GD + +DG F+ DR
Sbjct: 103 GSECLPPPPDG---VRGFPRCR-YVHKAQGTGPC--------PGDYAF-HKDGAFFLYDR 149
Query: 440 LKDLIKYKGYQVAPAELEHLLLS 462
L + Y+G A + L+L+
Sbjct: 150 LASTVIYRGVNFAEGVIAFLILA 172
>pdb|1WFN|A Chain A, The Fourth Fn3 Domain Of Human Sidekick-2
Length = 119
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 65 VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI 108
+TG R+S+ E+ R + YL NVT + L+T +IE+
Sbjct: 48 LTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEV 91
>pdb|3S88|I Chain I, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Gulu) Bound To 16f6
Length = 298
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 35/143 (24%)
Query: 337 VQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGD-------------- 382
+++ GL +GV + P +RWG +G+ K+V E G+
Sbjct: 48 LKSVGLNLEGSGVSTDI-PSATKRWG----FRSGVPPKVVSYEAGEWAENCYNLEIKKPD 102
Query: 383 ---SLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDR 439
LPP +G +RG + YV + + T GD + +DG F+ DR
Sbjct: 103 GSECLPPPPDG---VRGFPRCR-YVHKAQGTGPC--------PGDYAF-HKDGAFFLYDR 149
Query: 440 LKDLIKYKGYQVAPAELEHLLLS 462
L + Y+G A + L+L+
Sbjct: 150 LASTVIYRGVNFAEGVIAFLILA 172
>pdb|3CSK|A Chain A, Structure Of Dpp Iii From Saccharomyces Cerevisiae
Length = 711
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 59 VALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDT 97
+ L N+VT + F + +R +ASYL+ + + NDT
Sbjct: 244 ITLSNAVTKVEFIFGDHSREMRLVASYLKEAQKFAANDT 282
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 27/218 (12%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFH 245
V + V + SSGTTG+ V T R++ A S ++ R P L +
Sbjct: 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGR--PGDTLHNAFGYG 146
Query: 246 IY--GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG 303
++ GL + A L V M + ++ + +F VTP ++ + G
Sbjct: 147 LFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQG 206
Query: 304 YD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA---YGLTESTAGVFRTVGPD-- 356
D SSL+ GA P + A ++ V + A YGL+E +GP
Sbjct: 207 MDPAESSLKIGIFGAEPWTQ----ALRNEVETRVGIDALDIYGLSE-------VMGPGVA 255
Query: 357 -ECRRWGSTGRL-SAGLEAKIVDPETGDSLPPGKEGEL 392
EC + +I+DP TG+ LP G +GEL
Sbjct: 256 CECVETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGEL 293
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 16/124 (12%)
Query: 276 AVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS-----------LETVACGAAPLGKDTI 324
A+ E + H + P V ++ GG+ G L++ L + C +
Sbjct: 206 AMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKF 265
Query: 325 MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSL 384
A A+ LVQA+G + A + D RW ++G E I + E G S+
Sbjct: 266 EALATCD---ALVQAHGALKGLAASLMKIAND--VRWLASGPRCGIGEISIPENEPGSSI 320
Query: 385 PPGK 388
PGK
Sbjct: 321 MPGK 324
>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3BN9|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3NCL|A Chain A, Crystal Structure Of Mt-Sp1 Bound To Benzamidine
Phosphonate Inhibitor
pdb|3NPS|A Chain A, Crystal Structure Of Membrane-Type Serine Protease 1
(Mt-Sp1) In Complex With The Fab Inhibitor S4
pdb|3SO3|A Chain A, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 241
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 404 VGEPEVTSATLLPDGWMRTGDLCYIDEDGFLF 435
+G+ + A+L+ W+ + CYID+ GF +
Sbjct: 21 LGQGHICGASLISPNWLVSAAHCYIDDRGFRY 52
>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAW|C Chain C, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAX|A Chain A, Crystal Structure Of Mtsp1 (Matriptase)
pdb|2GV6|A Chain A, Crystal Structure Of Matriptase With Inhibitor Cj-730
pdb|2GV7|A Chain A, Structure Of Matriptase In Complex With Inhibitor Cj-672
Length = 241
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 404 VGEPEVTSATLLPDGWMRTGDLCYIDEDGFLF 435
+G+ + A+L+ W+ + CYID+ GF +
Sbjct: 21 LGQGHICGASLISPNWLVSAAHCYIDDRGFRY 52
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 16/124 (12%)
Query: 276 AVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS-----------LETVACGAAPLGKDTI 324
A+ E + H + P V ++ GG+ G L++ L + C +
Sbjct: 206 AMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKF 265
Query: 325 MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSL 384
A A+ LVQA+G + A + D RW ++G E I + E G S+
Sbjct: 266 EALATCD---ALVQAHGALKGLAASLMKIAND--VRWLASGPRCGIGEISIPENEPGSSI 320
Query: 385 PPGK 388
PGK
Sbjct: 321 MPGK 324
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 16/124 (12%)
Query: 276 AVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS-----------LETVACGAAPLGKDTI 324
A+ E + H + P V ++ GG+ G L++ L + C +
Sbjct: 206 AMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKF 265
Query: 325 MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSL 384
A A+ LVQA+G + A + D RW ++G E I + E G S+
Sbjct: 266 EALATCD---ALVQAHGALKGLAASLMKIAND--VRWLASGPRCGIGEISIPENEPGSSI 320
Query: 385 PPGK 388
PGK
Sbjct: 321 MPGK 324
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
Length = 467
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 16/124 (12%)
Query: 276 AVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS-----------LETVACGAAPLGKDTI 324
A+ E + H + P V ++ GG+ G L++ L + C +
Sbjct: 206 AMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKF 265
Query: 325 MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSL 384
A A+ LVQA+G + A + D RW ++G E I + E G S+
Sbjct: 266 EALATCD---ALVQAHGALKGLAASLMKIAND--VRWLASGPRCGIGEISIPENEPGSSI 320
Query: 385 PPGK 388
PGK
Sbjct: 321 MPGK 324
>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine
pdb|3P8F|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Sfti-1
Length = 241
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 404 VGEPEVTSATLLPDGWMRTGDLCYIDEDGFLF 435
+G+ + A+L+ W+ + CYID+ GF +
Sbjct: 21 LGQGHICGASLISPNWLVSAAHCYIDDRGFRY 52
>pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|C Chain C, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|E Chain E, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|G Chain G, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
Length = 507
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYV---GEPEVTSATLL 415
G++AKIV E G+ L K+GE T+M G+ G+P+ ATL
Sbjct: 376 GVQAKIVTYEWGEYLKRAKDGEHQ----TVMMGWTGDNGDPDNFFATLF 420
>pdb|3CSY|I Chain I, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|K Chain K, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|M Chain M, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|O Chain O, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
Length = 334
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 50/135 (37%), Gaps = 21/135 (15%)
Query: 337 VQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGD----------SLPP 386
+++ GL GV V P +RWG +G+ K+V+ E G+ P
Sbjct: 48 LRSVGLNLEGNGVATDV-PSATKRWG----FRSGVPPKVVNYEAGEWAENCYNLEIKKPD 102
Query: 387 GKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKY 446
G E P G G P + GD + E F F+ DRL + Y
Sbjct: 103 GSECL-----PAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAF-FLYDRLASTVIY 156
Query: 447 KGYQVAPAELEHLLL 461
+G A + L+L
Sbjct: 157 RGTTFAEGVVAFLIL 171
>pdb|1DPE|A Chain A, Dipeptide-Binding Protein
Length = 507
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429
G++AKIV E G+ L K+GE T+M G+ G+ PD + T C
Sbjct: 376 GVQAKIVTYEWGEYLKRAKDGEHQ----TVMMGWTGD------NGDPDNFFATEFSCAAS 425
Query: 430 EDG 432
E G
Sbjct: 426 EQG 428
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,248,480
Number of Sequences: 62578
Number of extensions: 525040
Number of successful extensions: 1520
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1313
Number of HSP's gapped (non-prelim): 96
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)