Query 012015
Match_columns 473
No_of_seqs 199 out of 2618
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 19:56:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 5.5E-76 1.9E-80 593.5 47.4 445 19-473 6-466 (536)
2 3rix_A Luciferase, luciferin 4 100.0 3.3E-75 1.1E-79 589.6 39.3 445 18-473 4-471 (550)
3 2d1s_A Luciferase, luciferin 4 100.0 1.7E-73 5.7E-78 576.3 44.6 442 19-473 9-473 (548)
4 3g7s_A Long-chain-fatty-acid-- 100.0 8E-74 2.7E-78 579.4 39.5 427 38-473 19-471 (549)
5 4fuq_A Malonyl COA synthetase; 100.0 4.9E-73 1.7E-77 567.2 39.1 421 42-473 4-431 (503)
6 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.9E-73 6.6E-78 574.9 36.0 423 38-473 25-462 (539)
7 3r44_A Fatty acyl COA syntheta 100.0 2.6E-73 8.9E-78 571.1 36.7 424 37-473 15-445 (517)
8 4dg8_A PA1221; ANL superfamily 100.0 1.7E-72 5.7E-77 574.6 38.2 414 37-473 26-451 (620)
9 3fce_A D-alanine--poly(phospho 100.0 1.6E-72 5.6E-77 565.5 37.4 422 38-473 1-431 (512)
10 3o83_A Peptide arylation enzym 100.0 4.2E-73 1.4E-77 573.1 32.3 424 38-473 30-471 (544)
11 3tsy_A Fusion protein 4-coumar 100.0 3.5E-72 1.2E-76 603.2 41.5 457 9-473 35-513 (979)
12 3etc_A AMP-binding protein; ad 100.0 1.3E-71 4.4E-76 565.1 42.7 424 38-473 55-507 (580)
13 1v25_A Long-chain-fatty-acid-C 100.0 2.5E-72 8.7E-77 567.0 36.6 423 37-473 17-467 (541)
14 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.1E-71 3.9E-76 558.1 39.9 417 38-473 2-434 (504)
15 1pg4_A Acetyl-COA synthetase; 100.0 2E-71 6.9E-76 571.2 40.3 426 39-473 77-549 (652)
16 3e7w_A D-alanine--poly(phospho 100.0 3E-71 1E-75 555.9 39.4 421 38-473 1-430 (511)
17 4gr5_A Non-ribosomal peptide s 100.0 8.7E-72 3E-76 566.7 35.7 416 37-473 74-501 (570)
18 2v7b_A Benzoate-coenzyme A lig 100.0 6.4E-71 2.2E-75 556.2 41.3 420 38-473 23-461 (529)
19 1amu_A GRSA, gramicidin synthe 100.0 7.6E-71 2.6E-75 557.8 40.0 412 38-473 39-462 (563)
20 3c5e_A Acyl-coenzyme A synthet 100.0 2.1E-70 7.1E-75 555.5 41.6 419 39-473 39-488 (570)
21 3ivr_A Putative long-chain-fat 100.0 3E-71 1E-75 555.9 35.0 418 37-473 5-432 (509)
22 3rg2_A Enterobactin synthase c 100.0 5.8E-71 2E-75 565.5 37.6 421 38-473 27-466 (617)
23 3l8c_A D-alanine--poly(phospho 100.0 7.2E-71 2.5E-75 555.0 35.7 422 38-473 4-435 (521)
24 1ry2_A Acetyl-coenzyme A synth 100.0 2E-70 6.9E-75 563.9 39.3 427 39-473 83-558 (663)
25 3ipl_A 2-succinylbenzoate--COA 100.0 1.8E-69 6.3E-74 542.2 33.8 412 38-473 1-430 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 1.4E-69 4.8E-74 542.2 28.7 408 38-473 22-438 (505)
27 2vsq_A Surfactin synthetase su 100.0 9.4E-68 3.2E-72 582.3 38.8 417 38-473 464-893 (1304)
28 3kxw_A Saframycin MX1 syntheta 100.0 1E-68 3.6E-73 547.8 28.7 422 38-473 11-493 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 7.6E-68 2.6E-72 540.3 32.1 423 38-473 21-493 (576)
30 3ite_A SIDN siderophore synthe 100.0 2.3E-67 7.8E-72 534.2 32.4 422 37-473 19-460 (562)
31 3t5a_A Long-chain-fatty-acid-- 100.0 1.4E-63 4.8E-68 497.5 27.1 385 38-439 24-480 (480)
32 3qov_A Phenylacetate-coenzyme 100.0 1.8E-44 6.3E-49 354.5 21.1 266 189-473 82-363 (436)
33 4gs5_A Acyl-COA synthetase (AM 100.0 1.5E-44 5.2E-49 344.1 16.7 246 191-472 36-284 (358)
34 2y4o_A Phenylacetate-coenzyme 100.0 2.4E-43 8.2E-48 347.2 21.2 266 189-473 89-367 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 1.8E-43 6.1E-48 347.5 20.2 266 189-473 87-365 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 4.9E-33 1.7E-37 267.0 16.0 239 189-449 88-368 (369)
37 4eql_A 4-substituted benzoates 99.0 2.2E-09 7.4E-14 105.8 13.6 134 306-463 296-447 (581)
38 4b2g_A GH3-1 auxin conjugating 98.9 1.9E-09 6.5E-14 106.3 9.7 133 306-462 301-458 (609)
39 4epl_A Jasmonic acid-amido syn 98.8 1.9E-08 6.4E-13 98.9 10.0 134 306-462 301-453 (581)
40 2y27_A Phenylacetate-coenzyme 94.0 0.32 1.1E-05 46.6 10.8 100 56-157 89-197 (437)
41 2y4o_A Phenylacetate-coenzyme 93.1 0.59 2E-05 44.8 11.1 99 56-156 91-198 (443)
42 3qov_A Phenylacetate-coenzyme 92.2 0.63 2.1E-05 44.6 9.9 99 57-157 86-193 (436)
43 3hgu_A EHPF; phenazine, antibi 87.0 2.1 7.1E-05 39.8 8.6 99 56-157 90-220 (369)
44 2d1s_A Luciferase, luciferin 4 84.3 4.9 0.00017 39.6 10.3 98 57-157 192-298 (548)
45 3o83_A Peptide arylation enzym 80.4 15 0.00052 36.0 12.1 96 56-156 190-295 (544)
46 3ipl_A 2-succinylbenzoate--COA 80.3 13 0.00045 35.9 11.5 97 56-157 162-266 (501)
47 1mdb_A 2,3-dihydroxybenzoate-A 79.8 13 0.00044 36.4 11.3 96 56-156 181-286 (539)
48 3r44_A Fatty acyl COA syntheta 79.0 16 0.00055 35.5 11.7 96 56-157 169-273 (517)
49 3rix_A Luciferase, luciferin 4 78.4 9.7 0.00033 37.5 9.9 100 56-157 189-296 (550)
50 3e7w_A D-alanine--poly(phospho 74.3 11 0.00038 36.6 9.0 98 56-157 142-249 (511)
51 1v25_A Long-chain-fatty-acid-C 74.3 17 0.00058 35.6 10.4 99 56-156 175-281 (541)
52 3fce_A D-alanine--poly(phospho 73.8 10 0.00035 36.9 8.6 98 56-157 143-250 (512)
53 3c5e_A Acyl-coenzyme A synthet 71.6 22 0.00077 35.0 10.6 98 56-157 205-312 (570)
54 3ni2_A 4-coumarate:COA ligase; 69.9 9.8 0.00034 37.3 7.5 101 56-157 177-286 (536)
55 3rg2_A Enterobactin synthase c 69.4 38 0.0013 33.7 11.8 96 56-156 183-288 (617)
56 3kxw_A Saframycin MX1 syntheta 69.1 14 0.00048 36.6 8.5 97 56-156 166-274 (590)
57 1t5h_X 4-chlorobenzoyl COA lig 68.8 22 0.00075 34.4 9.7 97 56-157 152-259 (504)
58 2v7b_A Benzoate-coenzyme A lig 68.6 27 0.00091 34.0 10.3 98 56-157 182-289 (529)
59 4dg8_A PA1221; ANL superfamily 67.1 29 0.00099 34.7 10.3 96 56-156 163-267 (620)
60 4gr5_A Non-ribosomal peptide s 66.6 22 0.00077 35.0 9.4 97 56-157 213-318 (570)
61 3l8c_A D-alanine--poly(phospho 61.9 46 0.0016 32.2 10.5 100 56-157 144-253 (521)
62 3nyq_A Malonyl-COA ligase; A/B 61.5 53 0.0018 31.6 10.8 96 56-157 154-258 (505)
63 3tsy_A Fusion protein 4-coumar 61.0 26 0.00088 37.3 9.1 100 56-156 224-332 (979)
64 3g7s_A Long-chain-fatty-acid-- 59.7 30 0.001 33.8 8.8 96 57-157 180-283 (549)
65 3t5a_A Long-chain-fatty-acid-- 59.2 20 0.00068 34.3 7.3 93 56-153 182-292 (480)
66 3ivr_A Putative long-chain-fat 58.6 62 0.0021 31.1 10.8 96 56-157 159-263 (509)
67 1amu_A GRSA, gramicidin synthe 57.1 39 0.0013 33.2 9.1 97 56-156 181-287 (563)
68 4gs5_A Acyl-COA synthetase (AM 56.9 27 0.00091 32.0 7.4 95 56-157 36-138 (358)
69 3tbh_A O-acetyl serine sulfhyd 55.2 36 0.0012 30.9 7.8 62 90-151 65-127 (334)
70 3etc_A AMP-binding protein; ad 51.1 34 0.0011 33.8 7.5 98 56-157 224-331 (580)
71 3gqw_A Fatty acid AMP ligase; 50.9 38 0.0013 33.2 7.9 98 56-156 175-284 (576)
72 3ezx_A MMCP 1, monomethylamine 50.3 90 0.0031 26.1 9.0 91 234-326 93-194 (215)
73 3vc3_A Beta-cyanoalnine syntha 50.2 49 0.0017 30.1 7.9 92 58-151 51-142 (344)
74 4fuq_A Malonyl COA synthetase; 48.1 51 0.0017 31.7 8.2 95 56-157 154-257 (503)
75 1pg4_A Acetyl-COA synthetase; 45.7 48 0.0016 33.3 7.8 99 56-157 255-365 (652)
76 2vsq_A Surfactin synthetase su 44.2 67 0.0023 35.4 9.1 96 56-156 606-711 (1304)
77 3ite_A SIDN siderophore synthe 43.7 65 0.0022 31.5 8.2 89 68-156 193-286 (562)
78 1ry2_A Acetyl-coenzyme A synth 38.1 82 0.0028 31.7 8.1 99 56-157 261-371 (663)
79 3ju7_A Putative PLP-dependent 32.4 98 0.0034 28.4 7.1 61 84-148 68-135 (377)
80 4hlb_A Uncharacterized protein 32.4 1.2E+02 0.004 20.6 5.3 36 67-102 61-96 (115)
81 2q3b_A Cysteine synthase A; py 30.4 1.8E+02 0.0061 25.8 8.3 59 92-151 64-122 (313)
82 1zsy_A Mitochondrial 2-enoyl t 29.8 1.3E+02 0.0043 27.3 7.3 80 69-149 139-223 (357)
83 2l66_A SSO7C4, transcriptional 28.9 62 0.0021 19.9 3.4 21 85-105 19-39 (53)
84 4eez_A Alcohol dehydrogenase 1 28.7 1.7E+02 0.0057 26.3 7.9 76 69-148 136-214 (348)
85 4aec_A Cysteine synthase, mito 26.7 1.9E+02 0.0066 27.2 7.9 61 90-150 168-229 (430)
86 1yfb_A Transition state regula 26.6 60 0.0021 20.7 3.1 21 85-105 29-49 (59)
87 2egu_A Cysteine synthase; O-ac 26.5 1.9E+02 0.0064 25.6 7.6 59 92-151 62-120 (308)
88 1o69_A Aminotransferase; struc 26.2 2.3E+02 0.008 25.8 8.6 57 90-149 67-129 (394)
89 2jtq_A Phage shock protein E; 26.0 1.2E+02 0.0041 20.4 5.0 45 68-120 22-66 (85)
90 4d9i_A Diaminopropionate ammon 25.8 2.4E+02 0.008 26.1 8.4 56 99-154 115-170 (398)
91 2pqm_A Cysteine synthase; OASS 25.3 2E+02 0.0069 25.9 7.7 59 92-151 75-133 (343)
92 1z7w_A Cysteine synthase; tran 25.3 2.2E+02 0.0075 25.3 7.9 60 92-151 63-122 (322)
93 3dzz_A Putative pyridoxal 5'-p 24.7 2.4E+02 0.0081 25.4 8.3 54 92-148 106-166 (391)
94 3ss7_X D-serine dehydratase; t 24.3 2.6E+02 0.0089 26.3 8.5 58 97-154 161-218 (442)
95 3ijw_A Aminoglycoside N3-acety 24.2 58 0.002 28.4 3.5 24 80-104 18-41 (268)
96 2duw_A Putative COA-binding pr 24.2 1.2E+02 0.004 23.4 5.1 9 56-64 13-21 (145)
97 3ri6_A O-acetylhomoserine sulf 23.2 2.3E+02 0.0077 26.6 7.8 31 115-147 142-172 (430)
98 4h1h_A LMO1638 protein; MCCF-l 22.7 1.8E+02 0.0061 26.1 6.7 60 91-150 8-86 (327)
99 3acd_A Hypoxanthine-guanine ph 22.5 1.2E+02 0.0041 24.5 5.0 43 68-112 12-54 (181)
100 1eg5_A Aminotransferase; PLP-d 22.3 2.2E+02 0.0076 25.5 7.6 55 93-148 87-145 (384)
101 2nyg_A YOKD protein; PFAM02522 22.3 66 0.0022 28.2 3.5 23 81-104 17-39 (273)
102 3sma_A FRBF; N-acetyl transfer 22.1 67 0.0023 28.2 3.5 30 67-104 19-48 (286)
103 1y80_A Predicted cobalamin bin 22.1 2.6E+02 0.009 22.9 7.3 56 95-150 88-147 (210)
104 3tqh_A Quinone oxidoreductase; 21.9 1.7E+02 0.0057 26.0 6.4 74 69-148 125-202 (321)
105 1wrj_A Methylated-DNA--protein 21.8 1.1E+02 0.0038 24.0 4.4 37 39-88 71-111 (156)
106 3a2b_A Serine palmitoyltransfe 21.8 3.9E+02 0.013 24.1 9.2 54 92-149 124-180 (398)
107 3kki_A CAI-1 autoinducer synth 21.7 1.7E+02 0.0058 26.8 6.7 54 92-149 140-193 (409)
108 2v03_A Cysteine synthase B; py 21.4 3.3E+02 0.011 23.9 8.2 58 92-150 58-115 (303)
109 3s2e_A Zinc-containing alcohol 21.4 2E+02 0.0069 25.6 6.9 76 69-149 139-217 (340)
110 1mdo_A ARNB aminotransferase; 21.3 2.1E+02 0.007 25.9 7.1 56 90-149 74-134 (393)
111 3l6b_A Serine racemase; pyrido 21.2 1.5E+02 0.0051 26.8 5.9 54 99-152 79-132 (346)
112 2hjv_A ATP-dependent RNA helic 21.1 2.9E+02 0.0099 21.3 7.2 71 78-152 22-95 (163)
113 3dwg_A Cysteine synthase B; su 20.8 2.7E+02 0.0092 24.8 7.5 58 92-150 70-127 (325)
114 3hs3_A Ribose operon repressor 20.1 3.9E+02 0.013 22.5 8.4 64 83-150 2-75 (277)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=5.5e-76 Score=593.47 Aligned_cols=445 Identities=36% Similarity=0.572 Sum_probs=388.9
Q ss_pred CceecCCCCCCCCCCCCCCCCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEE
Q 012015 19 TKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTA 98 (473)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V 98 (473)
..+|++..+..++|. .+|+.+++.++++++ ||++|+++..+++++||+||.++++++|++|++ .|+++||+|
T Consensus 6 ~~i~~~~~~~~~~p~---~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V 77 (536)
T 3ni2_A 6 EFIFRSKLPDIYIPK---NLPLHSYVLENLSNH----SSKPCLINGANGDVYTYADVELTARRVASGLNK-IGIQQGDVI 77 (536)
T ss_dssp CCCBCCSSCCCCCCS---SCCHHHHHTTTGGGS----TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEE
T ss_pred ceEEecCCCCCCCCC---CCcHHHHHHHHhhcC----CCceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEE
Confidence 456666666666553 379999999999999 999999997667899999999999999999999 899999999
Q ss_pred EEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhc----CCCeEEEEcCC-----
Q 012015 99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHRTILIDSP----- 169 (473)
Q Consensus 99 ~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~----- 169 (473)
+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+.. ...+++.++..
T Consensus 78 ~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (536)
T 3ni2_A 78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCL 157 (536)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCE
T ss_pred EEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999876655442 24455555432
Q ss_pred ChhhhhcccCCCccccccccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccC---CCCCCCcEEEEecChhhH
Q 012015 170 EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS---PKRVSPAVMLFTMPYFHI 246 (473)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~ 246 (473)
.+.++..... .........++++++++|||||||.||+|.++|+++........... ....+++++++.+|++|.
T Consensus 158 ~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 235 (536)
T 3ni2_A 158 HFSELTQADE--NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHI 235 (536)
T ss_dssp ETHHHHTSCG--GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSH
T ss_pred CHHHHhhccc--cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHH
Confidence 1223222211 12223345678999999999999999999999999998876654321 257789999999999999
Q ss_pred HhH-HHHHHHhhhcCeEEEecCCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHH
Q 012015 247 YGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIM 325 (473)
Q Consensus 247 ~g~-~~~l~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~ 325 (473)
+++ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.......+++++|.+++||+++++++.+
T Consensus 236 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~ 315 (536)
T 3ni2_A 236 YALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELED 315 (536)
T ss_dssp HHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHH
Confidence 998 5678899999999999999999999999999999999999999999998776777899999999999999999999
Q ss_pred HHHHhCCCCeEEeecCCccccccccccc---CCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccc
Q 012015 326 AFASKFPKVVLVQAYGLTESTAGVFRTV---GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402 (473)
Q Consensus 326 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~g 402 (473)
++++.++++++++.||+||++.+++... ........+++|+|+++++++|+|++++++++.|+.|||+|+|+.+++|
T Consensus 316 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~G 395 (536)
T 3ni2_A 316 TVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKG 395 (536)
T ss_dssp HHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSE
T ss_pred HHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchh
Confidence 9999999999999999999987655432 1222345679999999999999998889999999999999999999999
Q ss_pred cCCCccccccccCCCCeeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 403 YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 403 y~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
|+++|+.|.+.|+.+|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+|+|+|
T Consensus 396 Y~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~ 466 (536)
T 3ni2_A 396 YLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVG 466 (536)
T ss_dssp ETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEE
T ss_pred hcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEe
Confidence 99999999999988999999999999999999999999999999999999999999999999999999985
No 2
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.3e-75 Score=589.64 Aligned_cols=445 Identities=32% Similarity=0.509 Sum_probs=345.3
Q ss_pred CCceecCCCCCCCCCCCCCCCCHHHHhcccccCCCCCCCCCcEEE---ECCCCceecHHHHHHHHHHHHHHhHHhcCCCC
Q 012015 18 ATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI---NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSK 94 (473)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~a~~---~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~ 94 (473)
...++.++.+..+.+. .|+.++|.++++++ |+++|++ +...++++||+||.++++++|++|++ .|+++
T Consensus 4 ~~~~~~~~~~~~~~~~----~tl~~~l~~~a~~~----p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~ 74 (550)
T 3rix_A 4 AKNIKKGPAPFYPLED----GTAGEQLHKAMKRY----ALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNT 74 (550)
T ss_dssp GGGSEECCCCSSCCCC----SCHHHHHHHHHHHH----HTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCT
T ss_pred ccceeeCCCCCCCccc----CCHHHHHHHHHHhC----CCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-hCCCC
Confidence 3556777777777665 89999999999999 9998865 55557899999999999999999998 89999
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcC------CCeEEEEcC
Q 012015 95 NDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDS 168 (473)
Q Consensus 95 gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~~~~~~ 168 (473)
||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+... ...++.++.
T Consensus 75 gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
T 3rix_A 75 NHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDS 154 (550)
T ss_dssp TCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTC
T ss_pred CCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999998876655421 123333332
Q ss_pred C-------ChhhhhcccCCC----cc-ccccccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccC--CCCCCC
Q 012015 169 P-------EFDSMTMSWNSK----HE-LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSP 234 (473)
Q Consensus 169 ~-------~~~~~~~~~~~~----~~-~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~--~~~~~~ 234 (473)
. .+.++....... .. .+.....++++++|+|||||||.||+|.++|+++........... ....++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~ 234 (550)
T 3rix_A 155 KTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD 234 (550)
T ss_dssp SSCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTT
T ss_pred CccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCC
Confidence 1 122222211110 01 111122357899999999999999999999999998887766542 257789
Q ss_pred cEEEEecChhhHHhHHHHHHHhhhcCeEEEecCCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEe
Q 012015 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVAC 314 (473)
Q Consensus 235 ~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~ 314 (473)
+++++.+|++|.+++...+.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++.......+++++|.+++
T Consensus 235 ~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~ 314 (550)
T 3rix_A 235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS 314 (550)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEE
T ss_pred cEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEE
Confidence 99999999999999988899999999999999999999999999999999999999999999987767778999999999
Q ss_pred cCCCCCHHHHHHHHHhCCCCeEEeecCCcccccccccccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEE
Q 012015 315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSI 394 (473)
Q Consensus 315 ~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v 394 (473)
||+++++++.+++.+.++...+++.||+||++.+++... ......+++|+|+++++++|+|++++++++.|+.|||+|
T Consensus 315 gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~--~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v 392 (550)
T 3rix_A 315 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITP--EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCV 392 (550)
T ss_dssp CSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC--TTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEE
T ss_pred ecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCC--CCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEE
Confidence 999999999999999995556999999999998776533 233456899999999999999988899999999999999
Q ss_pred ecCccccccCCCccccccccCCCCeeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 395 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
+|+.++.||+++|+.|.+.|+.+|||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|+|
T Consensus 393 ~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~ 471 (550)
T 3rix_A 393 RGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAG 471 (550)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC------------------------------------
T ss_pred eCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence 9999999999999999999988999999999999999999999999999999999999999999999999999999985
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.7e-73 Score=576.25 Aligned_cols=442 Identities=32% Similarity=0.481 Sum_probs=376.5
Q ss_pred CceecCCCCCCCCCCCCCCCCHHH-HhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCE
Q 012015 19 TKTFHSLRPPIDLPPEDAPISAVD-YVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDT 97 (473)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~ 97 (473)
.|.|++..+....|. .+|+.+ ++.++++++ |++|+++...++++||+||.++++++|+.|++ .|+++||+
T Consensus 9 ~~~~~~~~~~~~~p~---~~~l~~~~l~~~~~~~-----~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~ 79 (548)
T 2d1s_A 9 NIVVGPKPFYPIEEG---SAGTQLRKYMERYAKL-----GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-YGLVVDGR 79 (548)
T ss_dssp TSEECCCCSSCCCSS---CHHHHHHHHHHHHHHH-----TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCE
T ss_pred ceEecCCCCCCCCCC---cCcHHHHHHHhhhccc-----CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCE
Confidence 356666655444432 258999 787776543 68999985447899999999999999999998 89999999
Q ss_pred EEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcC------CCeEEEEcCC--
Q 012015 98 AFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDSP-- 169 (473)
Q Consensus 98 V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~~~~~~~-- 169 (473)
|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++++....+... ...++.++..
T Consensus 80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (548)
T 2d1s_A 80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD 159 (548)
T ss_dssp EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC
T ss_pred EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999999998876654421 2334444432
Q ss_pred -----ChhhhhcccCCCcccccccc------CCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccC--CCCCCCcE
Q 012015 170 -----EFDSMTMSWNSKHELDRAKV------CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAV 236 (473)
Q Consensus 170 -----~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~--~~~~~~~~ 236 (473)
.+.++....... ....... .++++++++|||||||.||+|.++|+++........... ....++++
T Consensus 160 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~ 238 (548)
T 2d1s_A 160 YRGYQCLDTFIKRNTPP-GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTA 238 (548)
T ss_dssp BTTBCBHHHHHHHTSCT-TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCE
T ss_pred ccccccHHHHHhcCccc-cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccce
Confidence 234433322110 0111111 238899999999999999999999999998887766552 26778999
Q ss_pred EEEecChhhHHhHHH-HHHHhhhcCeEEEecCCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEec
Q 012015 237 MLFTMPYFHIYGLFF-CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACG 315 (473)
Q Consensus 237 ~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~ 315 (473)
+++.+|++|.+++.. ++.++ .|+++++.+.+++..+++.|+++++|+++++|+++..|.+.......+++++|.+++|
T Consensus 239 ~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 317 (548)
T 2d1s_A 239 VLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASG 317 (548)
T ss_dssp EEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEEC
T ss_pred EEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEc
Confidence 999999999999865 56666 9999999999999999999999999999999999999998766556678999999999
Q ss_pred CCCCCHHHHHHHHHhCCCCeEEeecCCcccccccccccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEe
Q 012015 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395 (473)
Q Consensus 316 G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~ 395 (473)
|+++++++.+++.+.++++.+++.||+||++.+++... ......+++|+|+++++++|+|+++++++++|+.|||+|+
T Consensus 318 G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~ 395 (548)
T 2d1s_A 318 GAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP--EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395 (548)
T ss_dssp SSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC--TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEE
T ss_pred CccCCHHHHHHHHHHcCCCceeeccccccccceeeecC--cccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEEC
Confidence 99999999999999998889999999999987766522 2234567999999999999999888999999999999999
Q ss_pred cCccccccCCCccccccccCCCCeeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 396 ~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
|+.++.||+++|+.|.+.|+.+|||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|+|
T Consensus 396 g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~ 473 (548)
T 2d1s_A 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAG 473 (548)
T ss_dssp STTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEE
T ss_pred CHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence 999999999999999999988999999999999999999999999999999999999999999999999999999985
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=8e-74 Score=579.36 Aligned_cols=427 Identities=29% Similarity=0.416 Sum_probs=359.9
Q ss_pred CCHHHHhcccccCCCCCCCCCcEEEECCCC------ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDDTVALINSVTG------LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPIL 111 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~ 111 (473)
.|+.++|.++++++ ||++|+++.+.. +++||+||.++++++|+.|++ .|+++||+|+|+++|+++++++
T Consensus 19 ~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~ 93 (549)
T 3g7s_A 19 ISLADRIDAAAEKF----GEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISR-KGVRKGEHVGVCIPNSIDYVMT 93 (549)
T ss_dssp CCTTHHHHHHHHHH----TTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHH
Confidence 89999999999999 999999987311 899999999999999999998 8999999999999999999999
Q ss_pred HHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhc----CCCe-EEEEc--CCChhhhhcccCCCccc
Q 012015 112 YFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHR-TILID--SPEFDSMTMSWNSKHEL 184 (473)
Q Consensus 112 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~-~~~~~--~~~~~~~~~~~~~~~~~ 184 (473)
+|||+++|++++|++|.++.+++.+++++++++++|++......+.. .... ++..+ ...+.++...... ..
T Consensus 94 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 171 (549)
T 3g7s_A 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGSE--DF 171 (549)
T ss_dssp HHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSSCHHHHHHHSCS--CC
T ss_pred HHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCcCHHHHHhcCcc--cc
Confidence 99999999999999999999999999999999999999887665542 2232 33332 2234444333221 11
Q ss_pred cccccC-CCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHHHHHHHhhhcCeEE
Q 012015 185 DRAKVC-QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAV 263 (473)
Q Consensus 185 ~~~~~~-~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v 263 (473)
...... ++++++|+|||||||.||+|.++|+++..........+ +..+.+++++.+|++|.+++..++.++..|++++
T Consensus 172 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~ 250 (549)
T 3g7s_A 172 ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYV 250 (549)
T ss_dssp CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEE
T ss_pred ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEE
Confidence 222223 38999999999999999999999999999888777666 6888999999999999999977889999999999
Q ss_pred EecCCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCC--CCCCCCceEEEecCCCCCHHHHHHHHHh----C--CCCe
Q 012015 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD--GYDLSSLETVACGAAPLGKDTIMAFASK----F--PKVV 335 (473)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--~~~l~~lr~v~~~G~~l~~~~~~~~~~~----~--~~~~ 335 (473)
+.+.+++..+++.|+++++|+++++|+++..|.+..... ..+++++|.+++||+++++++.+++.+. + ++++
T Consensus 251 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~ 330 (549)
T 3g7s_A 251 VMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLR 330 (549)
T ss_dssp EESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCE
T ss_pred EcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCcccc
Confidence 999999999999999999999999999999998764332 2568999999999999999999999987 5 2389
Q ss_pred EEeecCCcccccccccccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccC
Q 012015 336 LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL 415 (473)
Q Consensus 336 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 415 (473)
+++.||+||++.+++.... .......++|+|+++++++|+|++++++++.|+.|||+|+|+.+++||+++++.|.+.|.
T Consensus 331 ~~~~YG~TE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 409 (549)
T 3g7s_A 331 HNQIWGMTEACPMVTTNPP-LRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWW 409 (549)
T ss_dssp EEEEEECGGGSSEEEECCG-GGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEE
T ss_pred ccceEeccccchhhhcCCc-cccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhh
Confidence 9999999999987765332 222456799999999999999988999999999999999999999999999999999884
Q ss_pred --CCC--eeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 416 --PDG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 416 --~~~--~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
.+| ||+|||+|++|+||+|+++||.||+||++|++|+|.|||++|.+||+|.+|+|+|
T Consensus 410 ~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~ 471 (549)
T 3g7s_A 410 YDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIG 471 (549)
T ss_dssp ECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEEC
T ss_pred ccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEe
Confidence 567 9999999999999999999999999999999999999999999999999999985
No 5
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=4.9e-73 Score=567.22 Aligned_cols=421 Identities=28% Similarity=0.410 Sum_probs=361.4
Q ss_pred HHhcccccCCCCCCCCCcEEEE-CCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHhCC
Q 012015 42 DYVSSLRATLPWRDDDTVALIN-SVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120 (473)
Q Consensus 42 ~~~~~~~~~~~~~~p~~~a~~~-~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 120 (473)
+++.+.++++ |+++|+.. ...++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+++|+
T Consensus 4 ~l~~~~a~~~----p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 78 (503)
T 4fuq_A 4 NLFARLFDKL----DDPHKLAIETAAGDKISYAELVARAGRVANVLVA-RGLQVGDRVAAQTEKSVEALVLYLATVRAGG 78 (503)
T ss_dssp CHHHHHHSCC----SCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhC----CCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 3556667777 88877763 1237899999999999999999998 8999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHh----cCCCeEEEEcCCChhhhhcc-cCCCccccccccCCCCEE
Q 012015 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSPEFDSMTMS-WNSKHELDRAKVCQSDVA 195 (473)
Q Consensus 121 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 195 (473)
+++|+++.++.+++.+++++++++++|++.+....+. .....+..++......+... .............+++++
T Consensus 79 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a 158 (503)
T 4fuq_A 79 VYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLA 158 (503)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCCCCCCCTTSEE
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcCcCCCCCCCeE
Confidence 9999999999999999999999999999876543222 22333444433221111110 001112223345678999
Q ss_pred EEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhH-HHHHHHhhhcCeEEEecCCCHHHHH
Q 012015 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMML 274 (473)
Q Consensus 196 ~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~-~~~l~~l~~G~~~v~~~~~~~~~~~ 274 (473)
+++|||||||.||+|.++|+++..........+ ...+++++++.+|++|.+++ ...+.++..|+++++.+.+++..++
T Consensus 159 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~ 237 (503)
T 4fuq_A 159 AILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL 237 (503)
T ss_dssp EEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHH
T ss_pred EEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHH
Confidence 999999999999999999999999888877777 78899999999999999997 5577899999999999999999999
Q ss_pred HHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCcccccccccccC
Q 012015 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (473)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~ 354 (473)
+.++ ++|+++++|+++..+++........++++|.+++||+++++++.++|.+.+ +.++++.||+||++..+.. .
T Consensus 238 ~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~--~ 312 (503)
T 4fuq_A 238 DLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSN--P 312 (503)
T ss_dssp HHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCC--C
T ss_pred HHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCccccc--C
Confidence 9998 899999999999999998777777789999999999999999999999998 7899999999999876543 2
Q ss_pred CCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCCCCeeecCceEEEccCCcE
Q 012015 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFL 434 (473)
Q Consensus 355 ~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~l 434 (473)
.......+++|+|+++++++|+|++++++++.|+.|||+|+|+++++||+++|+.|.+.|..+|||+|||+|++|+||++
T Consensus 313 ~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l 392 (503)
T 4fuq_A 313 YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYV 392 (503)
T ss_dssp SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEE
T ss_pred CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcE
Confidence 23334567899999999999999889999999999999999999999999999999999988999999999999999999
Q ss_pred EEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 435 FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 435 ~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
+++||.||+||++|++|+|.|||++|.+||+|.+|+|+|
T Consensus 393 ~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~ 431 (503)
T 4fuq_A 393 HILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIG 431 (503)
T ss_dssp EECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEE
T ss_pred EEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEE
Confidence 999999999999999999999999999999999999984
No 6
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.9e-73 Score=574.95 Aligned_cols=423 Identities=25% Similarity=0.344 Sum_probs=364.5
Q ss_pred CCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 117 (473)
.|+.++|.++++++ ||++|+++. ++++||+||.++++++|++|++ +|+++||+|+++++|++++++++|||++
T Consensus 25 ~tl~~~l~~~a~~~----p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 97 (539)
T 1mdb_A 25 ETFGDLLRDRAAKY----GDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (539)
T ss_dssp CCHHHHHHHHHHHH----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC----CCCEEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 69999999999999 999999998 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchH--------HHHh-cC-CCe-EEEEcC-CChhhhhcccCCCcccc
Q 012015 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLA-KL-KHR-TILIDS-PEFDSMTMSWNSKHELD 185 (473)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~-~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~ 185 (473)
+|++++|++|.++.+++.+++++++++++|+++... ..+. .. ..+ ++..+. ..+.++..... . ...
T Consensus 98 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 175 (539)
T 1mdb_A 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHT-E-PVK 175 (539)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCC-C-CCC
T ss_pred cCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhccc-c-ccc
Confidence 999999999999999999999999999999987531 1221 11 122 223232 12332222111 0 112
Q ss_pred ccccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHH--HHHHHhhhcCeEE
Q 012015 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALMETAV 263 (473)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~--~~l~~l~~G~~~v 263 (473)
.....++++++++|||||||.||||+++|+++..........+ +..+++++++.+|++|.+++. .++.++..|++++
T Consensus 176 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 176 LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred cCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 2345678999999999999999999999999998887766665 678899999999999999985 6899999999999
Q ss_pred EecCCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCc
Q 012015 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343 (473)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~t 343 (473)
+.+.+++..+++.|+++++|++.++|+++..+++.......+++++|.+++||+++++++.+++++.+ ++++++.||+|
T Consensus 255 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~T 333 (539)
T 1mdb_A 255 LSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMA 333 (539)
T ss_dssp ECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECT
T ss_pred ECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCC
Confidence 99999999999999999999999999999999876554556789999999999999999999999998 89999999999
Q ss_pred ccccccccccCCCCCCCCCCccccCCCc-EEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCCCCeeec
Q 012015 344 ESTAGVFRTVGPDECRRWGSTGRLSAGL-EAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422 (473)
Q Consensus 344 E~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~T 422 (473)
|++..+.. .........+++|+|+++. +++|+| +++++++.|+.|||+|+|+++++||+++|+.|.+.|..+|||+|
T Consensus 334 E~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 411 (539)
T 1mdb_A 334 EGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT 411 (539)
T ss_dssp TSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEE
T ss_pred CCcccccC-CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeec
Confidence 96543322 1111112346899999764 899999 78999999999999999999999999999999999988999999
Q ss_pred CceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 423 GDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 423 gD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
||+|++|+||+|+++||+||+||++|++|+|.|||++|.+||+|.+|+|++
T Consensus 412 GDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~ 462 (539)
T 1mdb_A 412 GDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS 462 (539)
T ss_dssp EEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred CceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEe
Confidence 999999999999999999999999999999999999999999999999985
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.6e-73 Score=571.10 Aligned_cols=424 Identities=27% Similarity=0.375 Sum_probs=367.7
Q ss_pred CCCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHH
Q 012015 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (473)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~ 116 (473)
..|+.++|.++++++ |+++|+++.+.+.++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+
T Consensus 15 ~~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 15 MKNIGWMLRQRATVS----PRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp GGCHHHHHHHHHHHS----TTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhC----CCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-cCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 379999999999999 999999998444599999999999999999998 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcC----C--CeEE-EEcCCChhhhhcccCCCcccccccc
Q 012015 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----K--HRTI-LIDSPEFDSMTMSWNSKHELDRAKV 189 (473)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (473)
++|++++|++|.++.+++.+++++++++++|++......+... . ..++ ......+.+....... .......
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 167 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAA--DEPAVEC 167 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHHCCC--CCCCCCC
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhccCc--CCCCCCC
Confidence 9999999999999999999999999999999998776654321 0 0111 1111122222221111 2223345
Q ss_pred CCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHHHHHHHhhhcCeEEEecCCC
Q 012015 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFD 269 (473)
Q Consensus 190 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~~~ 269 (473)
.++++++++|||||||.||+|.++|+++..........+ +..+++++++.+|++|.+++...+.++..|+++++.+.++
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~ 246 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFD 246 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCC
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCC
Confidence 678999999999999999999999999999888877777 7889999999999999999977666666999999999999
Q ss_pred HHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCccccccc
Q 012015 270 LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV 349 (473)
Q Consensus 270 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~ 349 (473)
+..+++.++++++|++.++|+++..|.+.......+++++|.+++||+++++++.+.+.+. ++++++.||+||++..+
T Consensus 247 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~ 324 (517)
T 3r44_A 247 ATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGG 324 (517)
T ss_dssp HHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCE
T ss_pred HHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccce
Confidence 9999999999999999999999999988765555678899999999999999999999987 89999999999998876
Q ss_pred ccccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCCCCeeecCceEEEc
Q 012015 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429 (473)
Q Consensus 350 ~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~ 429 (473)
+...........+++|+|.++++++|+| +++.+++.| .|||+|+|+.++.||+++|+.|.+.| .+|||+|||+|++|
T Consensus 325 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~ 401 (517)
T 3r44_A 325 TLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEID 401 (517)
T ss_dssp EEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEEC
T ss_pred eecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEc
Confidence 6544333345668999999999999999 788888888 89999999999999999999999999 68999999999999
Q ss_pred cCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 430 EDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 430 ~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
+||+|+++||.||+||++|++|+|.|||++|.+||+|.+|+|+|
T Consensus 402 ~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~ 445 (517)
T 3r44_A 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIG 445 (517)
T ss_dssp TTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred CCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEe
Confidence 99999999999999999999999999999999999999999985
No 8
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.7e-72 Score=574.59 Aligned_cols=414 Identities=19% Similarity=0.181 Sum_probs=357.3
Q ss_pred CCCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHH
Q 012015 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (473)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~ 116 (473)
..|+.++|.++++++ ||++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+
T Consensus 26 ~~tl~~~~~~~a~~~----Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vva~lail 98 (620)
T 4dg8_A 26 HPTVVARFSEMAALH----PHREAIRDR--FGSVDYRQLLDSAEQLSDYLLE-HYPQPGVCLGVYGEYSRESITCLLAIL 98 (620)
T ss_dssp SCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HCCSSCCEEEEESSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 369999999999999 999999998 8899999999999999999999 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcCCCeEEEEcCCChhhhhcccCCCccccccccCCCCEEE
Q 012015 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (473)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (473)
++|+++||++|.++.+++.++++++++++++++......... .....+. .. .............++++++
T Consensus 99 kaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~--~~~~~~~-----~~---~~~~~~~~~~~~~~~d~a~ 168 (620)
T 4dg8_A 99 LSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG--LPCVPVR-----HL---PAAPASVARPCFAADQIAY 168 (620)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTT--SCEEEGG-----GC---CCCCCCSSCCCCCTTSEEE
T ss_pred HhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccC--Cceeeec-----cC---CcCCccccCCCCCCCCeEE
Confidence 999999999999999999999999999999976543221111 1111111 00 0001112223345789999
Q ss_pred EEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHHHHHHHhhhcCeEEEec--CCCHHHHH
Q 012015 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMML 274 (473)
Q Consensus 197 i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~--~~~~~~~~ 274 (473)
++|||||||.||||+++|+++.+.... ...+ ...++++++..+|++|..++..++.++..|+++++.+ .+++..++
T Consensus 169 iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 246 (620)
T 4dg8_A 169 INFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLR 246 (620)
T ss_dssp EEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHH
T ss_pred EEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHH
Confidence 999999999999999999999876654 3333 6788999999999999999988999999999999964 57999999
Q ss_pred HHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCcccccccccccC
Q 012015 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (473)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~ 354 (473)
+.|+++++|++.++|+++..+.+.. ...++++|.+++|||++++++.+++.+.+++++++|.||+||++.+++....
T Consensus 247 ~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~ 323 (620)
T 4dg8_A 247 QLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVV 323 (620)
T ss_dssp HHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEEC
T ss_pred HHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEec
Confidence 9999999999999999999998643 2357899999999999999999999998889999999999999887665332
Q ss_pred CC--CCCCCCCccccCCCcEEEEEcCCCCCC-CCCCCccEEEEecCccccccCCCccccccccCCC-------CeeecCc
Q 012015 355 PD--ECRRWGSTGRLSAGLEAKIVDPETGDS-LPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-------GWMRTGD 424 (473)
Q Consensus 355 ~~--~~~~~~~~G~p~~~~~~~i~d~~~~~~-~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~-------~~~~TgD 424 (473)
.. ......++|+|+++++++|+| +++.+ ++.|+.|||+|+|+++++||+++|+.|.+.|..+ +||+|||
T Consensus 324 ~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGD 402 (620)
T 4dg8_A 324 TDDDLEEDDIPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGD 402 (620)
T ss_dssp CTGGGGSSSCCCBEECTTEEEEEEC-TTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEE
T ss_pred cccccCCCCCCceecccCcEEEEEC-ccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCC
Confidence 22 223456899999999999999 55555 8899999999999999999999999999998654 7999999
Q ss_pred eEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 425 ~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
+|++++||+|+++||.||+||++|++|+|.|||++|.+||+|.+|+|++
T Consensus 403 l~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~ 451 (620)
T 4dg8_A 403 RARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLV 451 (620)
T ss_dssp EEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEE
T ss_pred EEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEE
Confidence 9999999999999999999999999999999999999999999999974
No 9
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.6e-72 Score=565.54 Aligned_cols=422 Identities=20% Similarity=0.313 Sum_probs=365.2
Q ss_pred CCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 117 (473)
||+.++|.+.++++ ||++|+++. ++++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||++
T Consensus 1 m~l~~~l~~~a~~~----p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~e~~~~~la~~~ 73 (512)
T 3fce_A 1 MKLLEQIEKWAAET----PDQTAFVWR--DAKITYKQLKEDSDALAHWISS-EYPDDRSPIMVYGHMQPEMIINFLGCVK 73 (512)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HSTTCCCCEEEEESSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCceEEEeC--CceEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999 999999998 8899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcCCCeEEEEcCCChhhhhcccCCCccccccccCCCCEEEE
Q 012015 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (473)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 197 (473)
+|++++|+++.++.+++.++++++++++++++..... ....... +....+...................+++++++
T Consensus 74 ~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i 149 (512)
T 3fce_A 74 AGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV--TDLPVRI--VSEDNLKDIFFTHKGNTPNPEHAVKGDENFYI 149 (512)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS--SCCSSEE--EETHHHHHHHHHTTTCCCCGGGSCCTTSEEEE
T ss_pred hCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc--cccccce--echhhhhhhcccccccCCCccccCCCCCeEEE
Confidence 9999999999999999999999999999999754321 1111222 22222222221111111222334567899999
Q ss_pred EccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHHHHHHHhhhcCeEEEecC---CCHHHHH
Q 012015 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (473)
Q Consensus 198 ~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~---~~~~~~~ 274 (473)
+|||||||.||+|.++|+++.+........+ +..+++++++.+|++|..++..++.++..|+++++.+. +++..++
T Consensus 150 ~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 228 (512)
T 3fce_A 150 IYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLF 228 (512)
T ss_dssp EEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHH
T ss_pred EECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHH
Confidence 9999999999999999999999888877777 78899999999999999999889999999999999876 6899999
Q ss_pred HHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCcccccccccccC
Q 012015 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (473)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~ 354 (473)
+.++++++|++.++|+++..++.........++++|.+++||+++++++.+++.+.++++++++.||+||++.+++....
T Consensus 229 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 308 (512)
T 3fce_A 229 ASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHV 308 (512)
T ss_dssp HHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEC
T ss_pred HHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEe
Confidence 99999999999999999999998877777789999999999999999999999999999999999999999887664322
Q ss_pred CC---CCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccC---CCCeeecCceEEE
Q 012015 355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL---PDGWMRTGDLCYI 428 (473)
Q Consensus 355 ~~---~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~~~~~~TgD~~~~ 428 (473)
.. ......++|+|.++++++|+| ++++++++|+.|||+|+|+.++.||+++|+.|.+.|. .++||+|||+|++
T Consensus 309 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~ 387 (512)
T 3fce_A 309 TEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387 (512)
T ss_dssp CHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE
T ss_pred ccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe
Confidence 11 122456899999999999999 8899999999999999999999999999999998873 4679999999999
Q ss_pred ccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 429 DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 429 ~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
+||+++++||.||+||++|++|+|.|||++|.++|.|.+|+|+|
T Consensus 388 -~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~ 431 (512)
T 3fce_A 388 -ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVP 431 (512)
T ss_dssp -ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEE
T ss_pred -cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence 89999999999999999999999999999999999999999984
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=4.2e-73 Score=573.15 Aligned_cols=424 Identities=24% Similarity=0.302 Sum_probs=336.3
Q ss_pred CCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 117 (473)
.|+.++|.++++++ ||++|+++. ++++||+||.++++++|++|++ .|+++||+|+|+++|++++++++|||++
T Consensus 30 ~tl~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 102 (544)
T 3o83_A 30 QPLTRILTVGVQSH----PHSLAIICG--ERQLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALLK 102 (544)
T ss_dssp CCTTHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCceEEEcC--CCceeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 78999999999999 999999998 8999999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchH--------HHHhcC--CC-eEEEEcCC----ChhhhhcccCCCc
Q 012015 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLAKL--KH-RTILIDSP----EFDSMTMSWNSKH 182 (473)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~~~--~~-~~~~~~~~----~~~~~~~~~~~~~ 182 (473)
+|++++|+++.++.+++.+++++++++++|++.... ..+... .. .++..+.. .+.+........
T Consensus 103 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 181 (544)
T 3o83_A 103 AGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAET- 181 (544)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCCSS-
T ss_pred hCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhccccc-
Confidence 999999999999999999999999999999987543 222211 12 23333322 122222211111
Q ss_pred cccccccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHH--HHHHHhhhcC
Q 012015 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALME 260 (473)
Q Consensus 183 ~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~--~~l~~l~~G~ 260 (473)
........++++++++|||||||.||+|.++|+++..........+ +..+++++++.+|++|.+++. .++.++..|+
T Consensus 182 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~ 260 (544)
T 3o83_A 182 FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-GLNSNTRLLCALPAPHNFMLSSPGALGVLHAGG 260 (544)
T ss_dssp CCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTC
T ss_pred ccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-CCCCCCeEEEecCcceEeecchHHHHHHHHcCC
Confidence 1112345678999999999999999999999999999988887777 788999999999999999884 5889999999
Q ss_pred eEEEecCCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeec
Q 012015 261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340 (473)
Q Consensus 261 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~y 340 (473)
++++.+.+++..+++.++++++|++.++|+++..+++.......+++++|.+++||+++++++.+++.+.+ ++++++.|
T Consensus 261 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~Y 339 (544)
T 3o83_A 261 CVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVF 339 (544)
T ss_dssp EEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeee
Confidence 99999999999999999999999999999999999887665556688999999999999999999999998 89999999
Q ss_pred CCcccccccccccCCCCCCCCCCccccC-CCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCCCCe
Q 012015 341 GLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (473)
Q Consensus 341 G~tE~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 419 (473)
|+||++..+... .........++|+|+ ++++++|+| ++++++++|+.|||+|+|+.++.||+++|+.|.+.|..+||
T Consensus 340 G~TE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~ 417 (544)
T 3o83_A 340 GMAEGLVNYTRL-DDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNY 417 (544)
T ss_dssp ECTTSCEEECCT-TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCC
T ss_pred ccccccceeecC-CCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCC
Confidence 999987544331 111222346899996 899999999 88999999999999999999999999999999999988999
Q ss_pred eecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 420 ~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
|+|||+|++|+||+|+++||.||+||++|++|+|.|||++|.+||+|.+|+|++
T Consensus 418 ~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~ 471 (544)
T 3o83_A 418 YYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVA 471 (544)
T ss_dssp EEEEEEEEECTTSCEEEEEEEC--------------------------------
T ss_pred eEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEe
Confidence 999999999999999999999999999999999999999999999999999985
No 11
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=3.5e-72 Score=603.16 Aligned_cols=457 Identities=37% Similarity=0.575 Sum_probs=358.4
Q ss_pred CCCCCCCCCCCceecCCCCCCCCCCCCCCCCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHH
Q 012015 9 FDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQN 88 (473)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~ 88 (473)
++..+........|++..+....|. .+|+.++|.++++++ ||++|+++..+++++||+||.++++++|+.|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~p~---~~tl~~~l~~~a~~~----pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~ 107 (979)
T 3tsy_A 35 MEKQSNNNNSDVIFRSKLPDIYIPN---HLSLHDYIFQNISEF----ATKPCLINGPTGHVYTYSDVHVISRQIAANFHK 107 (979)
T ss_dssp ----------CCCBCCSSCCCCCCT---TSCHHHHHTTTGGGT----TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCCceeecCCCCCCCCC---CCCHHHHHHHHHHhC----CCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH
Confidence 3444455566677777776655543 379999999999999 999999998668999999999999999999999
Q ss_pred hcCCCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHh----cCCCeEE
Q 012015 89 VTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTI 164 (473)
Q Consensus 89 ~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~~ 164 (473)
+|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+. .....++
T Consensus 108 -~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 186 (979)
T 3tsy_A 108 -LGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIV 186 (979)
T ss_dssp -TTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEE
T ss_pred -cCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEE
Confidence 89999999999999999999999999999999999999999999999999999999999987654433 2244455
Q ss_pred EEcCC----------ChhhhhcccCC-CccccccccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccC---CC
Q 012015 165 LIDSP----------EFDSMTMSWNS-KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS---PK 230 (473)
Q Consensus 165 ~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~---~~ 230 (473)
.++.. .+.++...... ..........++++++|+|||||||.||+|+++|+++...+....... ..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 266 (979)
T 3tsy_A 187 CIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY 266 (979)
T ss_dssp ECCCCTTSCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSC
T ss_pred EeCCcccccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhccccc
Confidence 44432 12222221111 001223345678999999999999999999999999998877654322 25
Q ss_pred CCCCcEEEEecChhhHHhH-HHHHHHhhhcCeEEEecCCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCc
Q 012015 231 RVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309 (473)
Q Consensus 231 ~~~~~~~l~~~pl~~~~g~-~~~l~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l 309 (473)
..+++++++.+|++|.+++ ..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+.......+++++
T Consensus 267 ~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l 346 (979)
T 3tsy_A 267 FHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSI 346 (979)
T ss_dssp CCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTC
T ss_pred CCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccce
Confidence 7789999999999999999 567889999999999999999999999999999999999999999999877777789999
Q ss_pred eEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCccccccccccc---CCCCCCCCCCccccCCCcEEEEEcCCCCCCCCC
Q 012015 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV---GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP 386 (473)
Q Consensus 310 r~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~ 386 (473)
|.+++||+++++++.+++.+.+|++++++.||+||++.+++... ........+++|+|+++++++|+|++++++++.
T Consensus 347 r~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~ 426 (979)
T 3tsy_A 347 RVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSR 426 (979)
T ss_dssp CEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCC
Confidence 99999999999999999999999999999999999987755432 122233557899999999999999888999999
Q ss_pred CCccEEEEecCccccccCCCccccccccCCCCeeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCc
Q 012015 387 GKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREV 466 (473)
Q Consensus 387 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v 466 (473)
|+.|||+|+|+.+++||+++|+.|.+.|+.+|||+|||+|++|+||+|+++||+||+||++|++|+|.|||++|.+||+|
T Consensus 427 g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V 506 (979)
T 3tsy_A 427 NQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDI 506 (979)
T ss_dssp TCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------------------
T ss_pred CCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCc
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcC
Q 012015 467 ADAAVIP 473 (473)
Q Consensus 467 ~~~~vvg 473 (473)
.+|+|++
T Consensus 507 ~~~~Vv~ 513 (979)
T 3tsy_A 507 TDVAVVA 513 (979)
T ss_dssp -------
T ss_pred ceEEEEE
Confidence 9999985
No 12
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.3e-71 Score=565.09 Aligned_cols=424 Identities=21% Similarity=0.300 Sum_probs=360.9
Q ss_pred CCHH-HHhcccccCCCCCCCCCcEEEEC---CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHH
Q 012015 38 ISAV-DYVSSLRATLPWRDDDTVALINS---VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (473)
Q Consensus 38 ~~l~-~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~l 113 (473)
+|+. ++|.+.++++ ||++|+++. +.++++||+||.++++++|++|++ +|+++||+|+|+++|++++++++|
T Consensus 55 ~n~~~~~l~~~a~~~----pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-~Gv~~Gd~V~l~~~~~~e~~~~~l 129 (580)
T 3etc_A 55 FNFAYDVVDVYARDS----PEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-HGIGKGDYVMLTLKSRYDFWYCML 129 (580)
T ss_dssp CCHHHHTHHHHHHHC----TTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECTTCTHHHHHHH
T ss_pred chHHHHHHHHHHhhC----CCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHH
Confidence 5666 8888889988 999999862 124799999999999999999998 899999999999999999999999
Q ss_pred HHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchH--HHHh-------cCCCeEEEEcCC------Chhhhhccc
Q 012015 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--HKLA-------KLKHRTILIDSP------EFDSMTMSW 178 (473)
Q Consensus 114 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~-------~~~~~~~~~~~~------~~~~~~~~~ 178 (473)
||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+. ......+.++.. ++.+.....
T Consensus 130 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (580)
T 3etc_A 130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEES 209 (580)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHS
T ss_pred HHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhC
Confidence 9999999999999999999999999999999999987643 3222 122344555432 122222222
Q ss_pred CCCcccc--ccccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHH-HHHHH
Q 012015 179 NSKHELD--RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRA 255 (473)
Q Consensus 179 ~~~~~~~--~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~l~~ 255 (473)
......+ .....++++++++|||||||.||+|.++|.+++.......... ...+++++++.+|++|..+++ .++.+
T Consensus 210 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (580)
T 3etc_A 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NVEDDGLHYTVADSGWGKCVWGKLYGQ 288 (580)
T ss_dssp CSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CCCTTCEEEECCCTTSTHHHHHTTHHH
T ss_pred CcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CCCCCceEEEeCChHHHHHHHHHHHHH
Confidence 1111111 1245678999999999999999999999999988776655554 678899999999999988874 47788
Q ss_pred hhhcCeEEEe--cCCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCC
Q 012015 256 AALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPK 333 (473)
Q Consensus 256 l~~G~~~v~~--~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~ 333 (473)
+..|+++++. ..+++..+++.|+++++|+++++|++++.|.+. .....++++||.+++|||++++++.++|.+.+ +
T Consensus 289 l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g 366 (580)
T 3etc_A 289 WIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-G 366 (580)
T ss_dssp HHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHHHH-S
T ss_pred HhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHHHh-C
Confidence 9999999887 568999999999999999999999999999886 34455689999999999999999999999988 8
Q ss_pred CeEEeecCCcccccccccccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEec-----CccccccCCCcc
Q 012015 334 VVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG-----PTIMKGYVGEPE 408 (473)
Q Consensus 334 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~-----~~~~~gy~~~~~ 408 (473)
+++++.||+||++..++.. .......+++|+|+++++++|+| ++++++++|+.|||+|+| +.++.||+++|+
T Consensus 367 ~~i~~~YG~TE~~~~~~~~--~~~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~ 443 (580)
T 3etc_A 367 IKLMEGFGQTETVVTIATF--PWMEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPE 443 (580)
T ss_dssp CCCEEEECCTTSSCCEECC--TTSCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHH
T ss_pred CeEecccccccccceeecC--CCCCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHh
Confidence 8999999999998765543 22344668999999999999999 679999999999999997 789999999999
Q ss_pred ccccccCCCCeeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 409 ~~~~~~~~~~~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
.|.+.| .+|||+|||+|++|+||+|+++||.||+||++|++|+|.|||++|.+||.|.+|+|+|
T Consensus 444 ~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg 507 (580)
T 3etc_A 444 RTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITG 507 (580)
T ss_dssp HHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred HHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEe
Confidence 999999 5899999999999999999999999999999999999999999999999999999985
No 13
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.5e-72 Score=567.04 Aligned_cols=423 Identities=25% Similarity=0.386 Sum_probs=352.2
Q ss_pred CCCHHHHhcccccCCCCCCCCCcEEEEC--CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHH
Q 012015 37 PISAVDYVSSLRATLPWRDDDTVALINS--VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (473)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~p~~~a~~~~--~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA 114 (473)
+.|+.++|.++++++ ||++|+++. ..++++||+||.++++++|++|++ .|+++||+|+++++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALF----GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHS----TTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 479999999999999 999999852 235799999999999999999998 8999999999999999999999999
Q ss_pred HHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcC-----CC-eEEEEcCC------ChhhhhcccCCCc
Q 012015 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSP------EFDSMTMSWNSKH 182 (473)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~~------~~~~~~~~~~~~~ 182 (473)
|+++|++++|++|.++.+++.+++++++++++|++++....+... .. .++.++.. .+.++.....
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 168 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEA--- 168 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCC---
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccC---
Confidence 999999999999999999999999999999999998876554321 12 23333322 1222221111
Q ss_pred cccccccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhh--ccCCCCCCCcEEEEecChhhHHhHHHHHHHhhhcC
Q 012015 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF--ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME 260 (473)
Q Consensus 183 ~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~--~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~ 260 (473)
......++++++++|||||||.||+|+++|+++........ ..+ ...+++++++.+|++|.+++...+.++..|+
T Consensus 169 --~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~ 245 (541)
T 1v25_A 169 --DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKDVVLPVVPMFHVNAWCLPYAATLVGA 245 (541)
T ss_dssp --CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTCEEEECSCTTSHHHHTHHHHHHHHTC
T ss_pred --CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCCEEEEeccchhhhHHHHHHHHHhcCc
Confidence 11334568999999999999999999999999987766532 333 5778999999999999999977888999999
Q ss_pred eEEEecC-CCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEee
Q 012015 261 TAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (473)
Q Consensus 261 ~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~ 339 (473)
++++.+. +++..+++.++++++|+++++|+++..|++.......+++++|.+++||+++++++.+++ +.+ ++++++.
T Consensus 246 ~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~ 323 (541)
T 1v25_A 246 KQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQG 323 (541)
T ss_dssp EEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEE
T ss_pred eEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeec
Confidence 9999864 799999999999999999999999999987654445568899999999999999999999 666 8999999
Q ss_pred cCCcccccccccccCCCC---------CCCCCCccccCCCcEEEEEcCCCCCCCCC--CCccEEEEecCccccccCCCcc
Q 012015 340 YGLTESTAGVFRTVGPDE---------CRRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPTIMKGYVGEPE 408 (473)
Q Consensus 340 yG~tE~~~~~~~~~~~~~---------~~~~~~~G~p~~~~~~~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~ 408 (473)
||+||++.+++....... ....+++|+|+++++++|+| +++++++. ++.|||+|+|+.++.||+++|+
T Consensus 324 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~ 402 (541)
T 1v25_A 324 YGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEE 402 (541)
T ss_dssp EECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHH
T ss_pred ccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChh
Confidence 999999887665322110 01246899999999999999 67888884 3689999999999999999999
Q ss_pred ccccccCCCCeeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 409 ~~~~~~~~~~~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
.|.+.|..+|||+|||+|++|+||+|+++||+||+||++|++|+|.|||++|.+||+|.+|+|+|
T Consensus 403 ~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~ 467 (541)
T 1v25_A 403 ATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVA 467 (541)
T ss_dssp HHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEE
T ss_pred hhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEE
Confidence 99999988999999999999999999999999999999999999999999999999999999984
No 14
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.1e-71 Score=558.08 Aligned_cols=417 Identities=24% Similarity=0.329 Sum_probs=358.0
Q ss_pred CCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 117 (473)
+|+.++|.++++++ ||++|+++...++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 2 ~tl~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 76 (504)
T 1t5h_X 2 QTVNEMLRRAATRA----PDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHR 76 (504)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhC----CCceEEEEcCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999 999999987556899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHHhhcCCeEEEE--ccchHHHH-hcC-CCeEEEEcCCChhhhhcccC---CCccccccccC
Q 012015 118 LGVIISPANPVNTESEISRQIQLSNPVIAFA--TSSVVHKL-AKL-KHRTILIDSPEFDSMTMSWN---SKHELDRAKVC 190 (473)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 190 (473)
+|++++|++|.++.+++.+++++++++++++ +......+ ... ..+++. ++++..... ...........
T Consensus 77 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 151 (504)
T 1t5h_X 77 LGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIF-----LGDLVRDGEPYSYGPPIEDPQRE 151 (504)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEE-----GGGTEETTEECCCSCCCCCCCCC
T ss_pred hCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEE-----ecchhhcCcccccCCccCCCCCC
Confidence 9999999999999999999999999999999 77766555 322 222221 222222110 00011113446
Q ss_pred CCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCC--CCCcEEEEecChhhHHhH-HHHHHHhhhcCeEEEecC
Q 012015 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR--VSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR 267 (473)
Q Consensus 191 ~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~--~~~~~~l~~~pl~~~~g~-~~~l~~l~~G~~~v~~~~ 267 (473)
++++++++|||||||.||+|.++|+++..........+ +. .+.+++++.+|++|.+++ ..++.++..|+++++.+.
T Consensus 152 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 230 (504)
T 1t5h_X 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE 230 (504)
T ss_dssp TTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS
T ss_pred CCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC
Confidence 78999999999999999999999999998887766665 45 788999999999999998 678899999999999999
Q ss_pred CCHHHHHHHHHHcccceEEecHHHHHHHhcCCC--CCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCccc
Q 012015 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345 (473)
Q Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~ 345 (473)
+++..+++.|+++++|+++++|+++..|.+... ....+++++|.+++||+++++++.++|++.+ +..+++.||+||+
T Consensus 231 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~ 309 (504)
T 1t5h_X 231 FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEA 309 (504)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTT
T ss_pred CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeeccccc
Confidence 999999999999999999999999999987642 2445689999999999999999999999998 7899999999999
Q ss_pred ccccccccCCCCCCCCCCccccCCCcEEEEEcCCCC---CCCCCCCccEEEEe-cCccccccCCCccccccccCCCCeee
Q 012015 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETG---DSLPPGKEGELSIR-GPTIMKGYVGEPEVTSATLLPDGWMR 421 (473)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~---~~~~~g~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~~~~~~ 421 (473)
+. +.... ....+++|+|.++++++|+| +.+ ++++.|+.|||+|+ |+.++.||+++|+.|.+.| .+|||+
T Consensus 310 ~~-~~~~~----~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~ 382 (504)
T 1t5h_X 310 MN-SLYMR----QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYR 382 (504)
T ss_dssp EE-EEEEE----SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEE
T ss_pred cc-ccccc----CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccc
Confidence 33 22211 23457899999999999999 455 89999999999999 8999999999999999998 689999
Q ss_pred cCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 422 TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
|||+|++|+||+|+++||.||+||++|++|+|.|||++|.+||+|.+|+|+|
T Consensus 383 TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~ 434 (504)
T 1t5h_X 383 TSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIG 434 (504)
T ss_dssp EEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred cCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence 9999999999999999999999999999999999999999999999999985
No 15
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2e-71 Score=571.24 Aligned_cols=426 Identities=20% Similarity=0.260 Sum_probs=359.9
Q ss_pred CHHHHhcccccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHH
Q 012015 39 SAVDYVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (473)
Q Consensus 39 ~l~~~~~~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA 114 (473)
++.++|.++++++ ||++|+++. +.++++||+||.++++++|+.|++ +|+++||+|+|+++|++++++++||
T Consensus 77 ~~~~~l~~~a~~~----pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~lA 151 (652)
T 1pg4_A 77 LAANCLDRHLQEN----GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLA 151 (652)
T ss_dssp HHHHHTGGGHHHH----TTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred HHHHHHHHHhccC----CCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 3566777778888 999999973 134789999999999999999998 8999999999999999999999999
Q ss_pred HHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchH------------HH-HhcC---C-CeEEEEcCC--------
Q 012015 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV------------HK-LAKL---K-HRTILIDSP-------- 169 (473)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~------------~~-~~~~---~-~~~~~~~~~-------- 169 (473)
|+++|++++|+++.++.+++.+++++++++++|+++... .. +... . ..+++++..
T Consensus 152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 231 (652)
T 1pg4_A 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQE 231 (652)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCB
T ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccC
Confidence 999999999999999999999999999999999986532 11 1111 1 234444321
Q ss_pred ----ChhhhhcccCCCccccccccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHh-hccCCCCCCCcEEEEecChh
Q 012015 170 ----EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-FASSPKRVSPAVMLFTMPYF 244 (473)
Q Consensus 170 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~-~~~~~~~~~~~~~l~~~pl~ 244 (473)
.+.++...... ........++++++|+|||||||.||||+++|++++...... ...+ +..++|++++.+|++
T Consensus 232 ~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~ 308 (652)
T 1pg4_A 232 GRDLWWRDLIEKASP--EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-DYHPGDIYWCTADVG 308 (652)
T ss_dssp TTEEEHHHHHTTSCS--CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-TCCTTCEEEECSCTT
T ss_pred CCceeHHHHHhhcCC--CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-CCCCCCEEEEccCCe
Confidence 12333322111 122233457899999999999999999999999988766433 3334 678899999999999
Q ss_pred hHHhH-HHHHHHhhhcCeEEEecC----CCHHHHHHHHHHcccceEEecHHHHHHHhcCCC--CCCCCCCCceEEEecCC
Q 012015 245 HIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAA 317 (473)
Q Consensus 245 ~~~g~-~~~l~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~~G~ 317 (473)
|..++ +.++.+|..|+++++.+. +++..+++.|+++++|+++++|++++.|.+... ....++++||.+++|||
T Consensus 309 ~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 388 (652)
T 1pg4_A 309 WVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388 (652)
T ss_dssp SHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESS
T ss_pred eeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecC
Confidence 99998 778899999999999874 589999999999999999999999999988754 34457899999999999
Q ss_pred CCCHHHHHHHHHhCC--CCeEEeecCCcccccccccccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEe
Q 012015 318 PLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395 (473)
Q Consensus 318 ~l~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~ 395 (473)
++++++.+++.+.++ ++++++.||+||++.+++...........+++|+|++|++++|+| +++++++.|+.|||+|+
T Consensus 389 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~ 467 (652)
T 1pg4_A 389 PINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVIT 467 (652)
T ss_dssp CCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEEC
T ss_pred CCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEc
Confidence 999999999999883 289999999999987766533222334568999999999999999 78999999999999999
Q ss_pred c--CccccccCCCccccccccCC--CCeeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEE
Q 012015 396 G--PTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAV 471 (473)
Q Consensus 396 ~--~~~~~gy~~~~~~~~~~~~~--~~~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v 471 (473)
| +++++||+++++.+.+.+.. +|||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||.|.+|+|
T Consensus 468 g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~V 547 (652)
T 1pg4_A 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV 547 (652)
T ss_dssp SCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEE
T ss_pred cCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9 78999999999988777643 7899999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 012015 472 IP 473 (473)
Q Consensus 472 vg 473 (473)
+|
T Consensus 548 vg 549 (652)
T 1pg4_A 548 VG 549 (652)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3e-71 Score=555.94 Aligned_cols=421 Identities=21% Similarity=0.297 Sum_probs=366.0
Q ss_pred CCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 117 (473)
||+.++|.++++++ ||++|+++. ++++||+||.++++++|++|.++.|.++|++|+++++|++++++++|||++
T Consensus 1 m~l~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~ 74 (511)
T 3e7w_A 1 MKLLHAIQTHAETY----PQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVK 74 (511)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 58999999999999 999999998 899999999999999999998745888999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcCCCeEEEEcCCChhhhhcccCCCccccccccCCCCEEEE
Q 012015 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (473)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 197 (473)
+|++++|+++.++.+++.+++++++++++|++..............+ .+.++....... ........+++++++
T Consensus 75 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~a~i 148 (511)
T 3e7w_A 75 AGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTV-----SAEELLENEGGS-VSQDQWVKEHETFYI 148 (511)
T ss_dssp HTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEE-----EHHHHHTSCSCC-CCGGGSCCTTSEEEE
T ss_pred hCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccccccee-----cHhhhhccccCC-ccccccCCCCCeEEE
Confidence 99999999999999999999999999999997543221111111111 122222221111 222334567899999
Q ss_pred EccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHHHHHHHhhhcCeEEEecC---CCHHHHH
Q 012015 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (473)
Q Consensus 198 ~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~---~~~~~~~ 274 (473)
+|||||||.||+|.++|+++..........+ ...+++++++.+|++|..++..++.++..|+++++.+. +++..++
T Consensus 149 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 227 (511)
T 3e7w_A 149 IYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLF 227 (511)
T ss_dssp EEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHH
T ss_pred EECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHH
Confidence 9999999999999999999999888877777 68889999999999999999889999999999999876 6899999
Q ss_pred HHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCcccccccccccC
Q 012015 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (473)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~ 354 (473)
+.++++++|++.++|+++..++.........++++|.+++||+++++++.+++.+.++++++++.||+||++.+++....
T Consensus 228 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 307 (511)
T 3e7w_A 228 EELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEI 307 (511)
T ss_dssp HHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEE
T ss_pred HHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEec
Confidence 99999999999999999999998877667778999999999999999999999999999999999999999887664322
Q ss_pred CC---CCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCC-CC--eeecCceEEE
Q 012015 355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-DG--WMRTGDLCYI 428 (473)
Q Consensus 355 ~~---~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-~~--~~~TgD~~~~ 428 (473)
.. ......++|+|+++++++|+| ++++++++|+.|||+|+|+.+++||+++|+.|.+.|.. +| ||+|||+|++
T Consensus 308 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~ 386 (511)
T 3e7w_A 308 TNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI 386 (511)
T ss_dssp CHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE
T ss_pred cccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc
Confidence 11 122446899999999999999 67999999999999999999999999999999998842 23 7999999999
Q ss_pred ccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 429 DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 429 ~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
+||+++++||.||+||++|++|+|.|||++|.+||.|.+|+|+|
T Consensus 387 -~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~ 430 (511)
T 3e7w_A 387 -QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIP 430 (511)
T ss_dssp -ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEE
T ss_pred -cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEE
Confidence 69999999999999999999999999999999999999999984
No 17
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=8.7e-72 Score=566.68 Aligned_cols=416 Identities=22% Similarity=0.261 Sum_probs=327.0
Q ss_pred CCCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHH
Q 012015 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (473)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~ 116 (473)
..++.++|.++++++ ||++|+++. ++++||+||.++++++|++|++ .|+++||+|+|+++|++++++++|||+
T Consensus 74 ~~~l~~~l~~~a~~~----pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 146 (570)
T 4gr5_A 74 GACVHELFEAQAARA----PDAVALLHE--ADELTYGALNERANRLAHRLVG-LGVAPGTLVGVHLERGFDMVVALLAVL 146 (570)
T ss_dssp SCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHC----CCCeEEECC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 368999999999999 999999998 8899999999999999999999 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcCCCeEEEEcCCChhhhhcccCCCccccccccCCCCEEE
Q 012015 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (473)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (473)
++|++++|++|.++.+++.+++++++++++|++......+.. ...+.+...... . . ..........++++++
T Consensus 147 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~----~-~-~~~~~~~~~~~~d~a~ 218 (570)
T 4gr5_A 147 KAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG--TTTLYVEDEAAS----D-A-PAGNLATGVGPEDVAC 218 (570)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCS--SEEEECCC-------------CCCCCCCCCTTSEEE
T ss_pred HHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccC--Ccceeeeccccc----c-c-cccccCCCCCCCCeEE
Confidence 999999999999999999999999999999999876543322 112222111100 0 0 0012223456789999
Q ss_pred EEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHHHHHHHhhhcCeEEEec--CCCHHHHH
Q 012015 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMML 274 (473)
Q Consensus 197 i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~--~~~~~~~~ 274 (473)
|+|||||||.||||+++|+++.+.... .... ...+++++++.+|++|..+...++.++..|+++++.+ .+++..++
T Consensus 219 i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 296 (570)
T 4gr5_A 219 VMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIG 296 (570)
T ss_dssp EECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHH
T ss_pred EEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHH
Confidence 999999999999999999999776644 3333 6788999999999999777788899999999999986 47899999
Q ss_pred HHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCcccccccccccC
Q 012015 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (473)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~ 354 (473)
+.|+++++|++.++|+++..|.+... ..++++|.+++||+++++++.+++.+.++++++++.||+||++++++....
T Consensus 297 ~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~ 373 (570)
T 4gr5_A 297 ELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAV 373 (570)
T ss_dssp HHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEEC
T ss_pred HHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeee
Confidence 99999999999999999999987543 247899999999999999999999999989999999999999887664332
Q ss_pred CC--CCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCCC--------CeeecCc
Q 012015 355 PD--ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD--------GWMRTGD 424 (473)
Q Consensus 355 ~~--~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~--------~~~~TgD 424 (473)
.. ......++|+|+++++++|+| +++++++.|+.|||+|+|+.++.||+++++.|.+.|..+ |||+|||
T Consensus 374 ~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGD 452 (570)
T 4gr5_A 374 VAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGD 452 (570)
T ss_dssp CGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEE
T ss_pred cccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCC
Confidence 11 122346799999999999999 789999999999999999999999999999999988543 7999999
Q ss_pred eEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 425 ~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
+|++|+||+|+++||+||+||++|++|+|.|||++|.+||.|.+|+|+|
T Consensus 453 lg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~ 501 (570)
T 4gr5_A 453 LARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLA 501 (570)
T ss_dssp EEEECTTSCEEEEEC----------------------------------
T ss_pred eEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEE
Confidence 9999999999999999999999999999999999999999999999985
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=6.4e-71 Score=556.18 Aligned_cols=420 Identities=23% Similarity=0.319 Sum_probs=351.1
Q ss_pred CC-HHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHH
Q 012015 38 IS-AVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (473)
Q Consensus 38 ~~-l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~ 116 (473)
+| +.+++.+.++ + ||++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+
T Consensus 23 ~~~~~~~l~~~~~-~----p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 94 (529)
T 2v7b_A 23 FNFAAYLFRLNET-R----AGKTAYIDD--TGSTTYGELEERARRFASALRT-LGVHPEERILLVMLDTVALPVAFLGAL 94 (529)
T ss_dssp CCHHHHHHHHTGG-G----TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSTHHHHHHHHHH
T ss_pred eeHHHHHHHhhhc-c----CCceEEEeC--CCCccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 45 7888888888 8 999999988 7899999999999999999998 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcC-------CCeEEEEcCC--------ChhhhhcccCCC
Q 012015 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------KHRTILIDSP--------EFDSMTMSWNSK 181 (473)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-------~~~~~~~~~~--------~~~~~~~~~~~~ 181 (473)
++|++++|+++.++.+++.+++++++++++|++......+... ...++..+.. .++++......
T Consensus 95 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (529)
T 2v7b_A 95 YAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAP- 173 (529)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCC-
T ss_pred HcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCC-
Confidence 9999999999999999999999999999999998766544321 1233333321 23333321111
Q ss_pred ccccccccCCCCEEEEEccCCCCCCcchhhhcHHHH-HHHHHHhhccCCCCCCCcEEEEecChhhHHhHH-HHHHHhhhc
Q 012015 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNL-TAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALM 259 (473)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l-~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~l~~l~~G 259 (473)
........++++++++|||||||.||+|.++|+++ ..........+ +..+++++++.+|++|.+++. .++.++..|
T Consensus 174 -~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 251 (529)
T 2v7b_A 174 -AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251 (529)
T ss_dssp -CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTCEEEESSCTTSHHHHHHHTHHHHHHT
T ss_pred -cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Confidence 11223456789999999999999999999999999 55554444444 678899999999999999984 567899999
Q ss_pred CeEEEe-cCCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEe
Q 012015 260 ETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (473)
Q Consensus 260 ~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~ 338 (473)
+++++. +.+++..+++.++++++|+++++|+++..+++..........++|.+++||+++++++.+++.+.+ ++++++
T Consensus 252 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~ 330 (529)
T 2v7b_A 252 ATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILD 330 (529)
T ss_dssp CEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEE
T ss_pred cEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceee
Confidence 999987 568999999999999999999999999999886543332124899999999999999999999988 899999
Q ss_pred ecCCcccccccccccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCCCC
Q 012015 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (473)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~ 418 (473)
.||+||++.+++.... .....+++|+|+++++++|+| ++++++++|+.|||+|+|+.++.||+++++.+.+.| .++
T Consensus 331 ~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~ 406 (529)
T 2v7b_A 331 GIGSTEMLHIFLSNRA--GAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGE 406 (529)
T ss_dssp EEECTTTSSEEEECCT--TCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETT
T ss_pred eEchhhcCceeecccc--CCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcC
Confidence 9999999766554322 224567999999999999999 789999999999999999999999999999999988 489
Q ss_pred eeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 419 ~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|++
T Consensus 407 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~ 461 (529)
T 2v7b_A 407 WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVG 461 (529)
T ss_dssp EEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEE
T ss_pred CcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999985
No 19
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=7.6e-71 Score=557.84 Aligned_cols=412 Identities=20% Similarity=0.262 Sum_probs=354.5
Q ss_pred CCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 117 (473)
.++.++|.++++++ ||++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 39 ~~l~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 111 (563)
T 1amu_A 39 KTIHQLFEEQVSKR----PNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVGIMMEKSIDLFIGILAVLK 111 (563)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCCeEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999997 8899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcCC--CeEEEEcCCChhhhhcccCCCccccccccCCCCEE
Q 012015 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (473)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (473)
+|++++|+++.++.+++.+++++++++++|++........... ..+..++...+.. . . . ........+++++
T Consensus 112 ~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~-~~~~~~~~~~d~a 185 (563)
T 1amu_A 112 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKI---R-E-G-TNLHVPSKSTDLA 185 (563)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTT---S-C-C-SCCCCCCCTTSEE
T ss_pred hCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhhcc---c-c-C-ccCCCCCCCCCeE
Confidence 9999999999999999999999999999999988766655432 2233333221110 0 0 0 1112234568999
Q ss_pred EEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHHHHHHHhhhcCeEEEecC---CCHHH
Q 012015 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKM 272 (473)
Q Consensus 196 ~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~---~~~~~ 272 (473)
+++|||||||.||||+++|+++.+........+ +..+++++++.+|++|..+++.++.++..|+++++.+. +++..
T Consensus 186 ~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 264 (563)
T 1amu_A 186 YVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVK 264 (563)
T ss_dssp EEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHH
T ss_pred EEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHH
Confidence 999999999999999999999998887776666 68889999999999999999888999999999999875 68999
Q ss_pred HHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCcccccccccc
Q 012015 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (473)
Q Consensus 273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~ 352 (473)
+++.++++++|++.++|+++..+... .++++|.+++||+++++++.++|.+. +.+++.||+||++.+++..
T Consensus 265 ~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~ 335 (563)
T 1amu_A 265 FEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTW 335 (563)
T ss_dssp HHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheee
Confidence 99999999999999999998877442 36789999999999999999998763 7899999999998776653
Q ss_pred cCCC-CCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCC------CCeeecCce
Q 012015 353 VGPD-ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------DGWMRTGDL 425 (473)
Q Consensus 353 ~~~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~~~~~TgD~ 425 (473)
.... ......++|+|+++++++|+| +++++++.|+.|||+|+|+++++||+++|+.|.+.|.. ++||+|||+
T Consensus 336 ~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDl 414 (563)
T 1amu_A 336 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 414 (563)
T ss_dssp ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred ecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCE
Confidence 3222 223456899999999999999 78999999999999999999999999999999988853 359999999
Q ss_pred EEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 426 CYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 426 ~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
|++|+||+|+++||+||+||++|++|+|.|||++|.+||+|.+|+|++
T Consensus 415 g~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~ 462 (563)
T 1amu_A 415 ARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSV 462 (563)
T ss_dssp EEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEE
T ss_pred EEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEE
Confidence 999999999999999999999999999999999999999999999974
No 20
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.1e-70 Score=555.48 Aligned_cols=419 Identities=21% Similarity=0.318 Sum_probs=357.8
Q ss_pred CHHHHhcccccC-----CCCCCCCCcEEEECC---CCceecHHHHHHHHHHHHHHhHHhc-CCCCCCEEEEEeCCCCcHH
Q 012015 39 SAVDYVSSLRAT-----LPWRDDDTVALINSV---TGLRVSFSEFTRRTNSLASYLQNVT-RLSKNDTAFVLSTNSIEIP 109 (473)
Q Consensus 39 ~l~~~~~~~~~~-----~~~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~~-g~~~gd~V~i~~~~~~~~~ 109 (473)
++.+++.+.+++ + ||++|+++.. .++++||+||.++++++|++|++ . |+++||+|+|+++|+++++
T Consensus 39 ~~~~~l~~~a~~~~a~~~----p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~~Gv~~gd~V~i~~~n~~e~~ 113 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKR----PPSPALWWVNGKGKELMWNFRELSENSQQAANVLSG-ACGLQRGDRVAVVLPRVPEWW 113 (570)
T ss_dssp HHHHTHHHHHHHHHTTSS----CCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHT-TTCCCTTCEEEEECCSCHHHH
T ss_pred HHHHHHHHHHhhccccCC----CCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHH-ccCCCCCCEEEEEcCCCHHHH
Confidence 356788777777 8 9999998731 24789999999999999999998 7 9999999999999999999
Q ss_pred HHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhc----C-CC-eEEEEcCC------Chhhhhcc
Q 012015 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L-KH-RTILIDSP------EFDSMTMS 177 (473)
Q Consensus 110 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~-~~-~~~~~~~~------~~~~~~~~ 177 (473)
+++|||+++|++++|+++.++.+++.+++++++++++|++++....+.. . .. .++.++.. .+.++...
T Consensus 114 ~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (570)
T 3c5e_A 114 LVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNE 193 (570)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHH
T ss_pred HHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhc
Confidence 9999999999999999999999999999999999999999887665532 1 12 23444431 13333222
Q ss_pred cCCCccccccccCCCCEEEEEccCCCCCCcchhhhcHHHHHH--HHHHhhccCCCCCCCcEEEEecChhhHHhHH-HHHH
Q 012015 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA--AVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFR 254 (473)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~--~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~l~ 254 (473)
... ........++++++|+|||||||.||+|.++|+ ++. ..... ..+ +..+++++++.+|++|.+++. .++.
T Consensus 194 ~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~ 268 (570)
T 3c5e_A 194 AST--THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-GLQASDIMWTISDTGWILNILCSLME 268 (570)
T ss_dssp SCS--CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-SCCTTCEEEECCCTTSHHHHHHTTHH
T ss_pred ccc--cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-CCCCCceEEEcCchHHHHHHHHHHHH
Confidence 111 112233457899999999999999999999999 444 33333 444 678899999999999999985 6889
Q ss_pred HhhhcCeEEEec--CCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCC
Q 012015 255 AAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332 (473)
Q Consensus 255 ~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~ 332 (473)
++..|+++++.+ .+++..+++.|+++++|+++++|+++..|.+.. ....+++++|.+++||+++++++.++|.+.+
T Consensus 269 ~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~- 346 (570)
T 3c5e_A 269 PWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQT- 346 (570)
T ss_dssp HHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHHH-
T ss_pred HHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHHh-
Confidence 999999999986 689999999999999999999999999998863 3344688999999999999999999999988
Q ss_pred CCeEEeecCCcccccccccccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEe-----cCccccccCCCc
Q 012015 333 KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR-----GPTIMKGYVGEP 407 (473)
Q Consensus 333 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~-----~~~~~~gy~~~~ 407 (473)
++++++.||+||++.+++... ......+++|+|+++++++|+| +++++++.|+.|||+|+ |++++.||+++|
T Consensus 347 g~~i~~~YG~TE~~~~~~~~~--~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~ 423 (570)
T 3c5e_A 347 GLDIRESYGQTETGLTCMVSK--TMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNP 423 (570)
T ss_dssp SCCCEEEEEETTTEEEEECCT--TSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCH
T ss_pred CCchhhccchhhcccceecCc--ccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccCCh
Confidence 889999999999987655422 2234567999999999999999 67999999999999999 999999999999
Q ss_pred cccccccCCCCeeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 408 EVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 408 ~~~~~~~~~~~~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
+.|.+.| .++||+|||+|++|+||+|+++||.||+||++|++|+|.|||++|.++|+|.+|+|++
T Consensus 424 ~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~ 488 (570)
T 3c5e_A 424 DKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVIS 488 (570)
T ss_dssp HHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEE
T ss_pred hHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEe
Confidence 9999988 5899999999999999999999999999999999999999999999999999999985
No 21
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=3e-71 Score=555.91 Aligned_cols=418 Identities=27% Similarity=0.377 Sum_probs=331.4
Q ss_pred CCCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHH
Q 012015 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (473)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~ 116 (473)
++|+.++|.++++++ ||++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+
T Consensus 5 ~~tl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 77 (509)
T 3ivr_A 5 DFTLADVYRRNAALF----PDRTAFMVD--GVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVA 77 (509)
T ss_dssp CCCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHC----CCceEEEEC--CcEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 389999999999999 999999998 8999999999999999999998 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHh----cC-CC-eEEEEcCC--ChhhhhcccCCCccccccc
Q 012015 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KL-KH-RTILIDSP--EFDSMTMSWNSKHELDRAK 188 (473)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~-~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 188 (473)
++|++++|++|.++.+++.+++++++++++|++.+....+. .. .. .++.++.. .+..+..... ........
T Consensus 78 ~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 156 (509)
T 3ivr_A 78 LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLAS-DTPFSAPE 156 (509)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCC-CSCCCCCC
T ss_pred HhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccC-CCCCCcCC
Confidence 99999999999999999999999999999999988766522 11 11 23333221 2222222111 11222345
Q ss_pred cCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHHHHHHHhhhcCeEEEecCC
Q 012015 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF 268 (473)
Q Consensus 189 ~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~~ 268 (473)
..++++++++|||||||.||+|.++|+++..........+ +..+++++++.+|++|.+++...+.++..|++.++...+
T Consensus 157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~ 235 (509)
T 3ivr_A 157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKF 235 (509)
T ss_dssp CCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSC
T ss_pred CCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEeccc
Confidence 5678999999999999999999999999999888877777 788999999999999999997777777777777777789
Q ss_pred CHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCcccccc
Q 012015 269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348 (473)
Q Consensus 269 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~ 348 (473)
++..+++.|+++++|++.++|+++..+++.. ...+++++|.++.+|++ ++.+.+.+.++++++++.||+||++.+
T Consensus 236 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~ 310 (509)
T 3ivr_A 236 DPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGL 310 (509)
T ss_dssp CHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEE
T ss_pred CHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccc
Confidence 9999999999999999999999999998875 34457899999999987 888999999999999999999999987
Q ss_pred cccccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCCCCeeecCceEEE
Q 012015 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428 (473)
Q Consensus 349 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~ 428 (473)
++..... ....++|+|+++++++|+| ++++++++|+.|||+|+|+++++||+++|+.+.+.| .+|||+|||+|++
T Consensus 311 ~~~~~~~---~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~ 385 (509)
T 3ivr_A 311 STFAPYR---DRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRF 385 (509)
T ss_dssp EEEEEGG---GSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEE
T ss_pred cccCccc---cCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEE
Confidence 6653322 2234699999999999999 679999999999999999999999999999999999 4899999999999
Q ss_pred ccCCcEEEEecc--CCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 429 DEDGFLFIVDRL--KDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 429 ~~~g~l~~~GR~--~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
++||+++++||. ||+||++|++|+|.|||++|.+||+|.+|+|+|
T Consensus 386 ~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~ 432 (509)
T 3ivr_A 386 DADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIG 432 (509)
T ss_dssp CTTSCEEEEEEC-----------------------------------
T ss_pred CCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEe
Confidence 999999999999 999999999999999999999999999999985
No 22
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=5.8e-71 Score=565.46 Aligned_cols=421 Identities=24% Similarity=0.337 Sum_probs=362.4
Q ss_pred CCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 117 (473)
.++.++|.++++ ||++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 27 ~~l~~~~~~~a~------pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~V~l~~~~s~~~vva~lA~l~ 97 (617)
T 3rg2_A 27 LPLTDILTRHAA------SDSIAVIDG--ERQLSYRELNQAADNLACSLRR-QGIKPGETALVQLGNVAELYITFFALLK 97 (617)
T ss_dssp CCTTHHHHTTTT------CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhC------CCCeEEecC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHh
Confidence 789999998876 789999998 8999999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchH--------HHHh--cCCCeEE-EEcCCC---hhhhhcccCCCcc
Q 012015 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLA--KLKHRTI-LIDSPE---FDSMTMSWNSKHE 183 (473)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~--~~~~~~~-~~~~~~---~~~~~~~~~~~~~ 183 (473)
+|+++||+++.++.+++.++++++++++++++.... ..+. ......+ ..+... +.+...... ..
T Consensus 98 aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 175 (617)
T 3rg2_A 98 LGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPA--ED 175 (617)
T ss_dssp HTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCC--SS
T ss_pred cCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhcccc--cc
Confidence 999999999999999999999999999999987543 1111 1122222 223222 222222111 11
Q ss_pred ccccccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHH--HHHHHhhhcCe
Q 012015 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALMET 261 (473)
Q Consensus 184 ~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~--~~l~~l~~G~~ 261 (473)
.......++++++++|||||||.||||+++|+++.+.+......+ ...+++++++.+|++|.+++. .++.++..|++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~ 254 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGT 254 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCE
Confidence 222344578999999999999999999999999999888877776 688999999999999998883 68999999999
Q ss_pred EEEecCCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCC--CCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEee
Q 012015 262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (473)
Q Consensus 262 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~ 339 (473)
+++.+.+++..+++.++++++|++.++|+++..+++.... ....++++|.+++|||++++++.+++.+.+ +++++|.
T Consensus 255 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~ 333 (617)
T 3rg2_A 255 VVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQV 333 (617)
T ss_dssp EEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEE
Confidence 9999989999999999999999999999999998875332 233689999999999999999999999998 8999999
Q ss_pred cCCcccccccccccCCCCCCCCCCccccC-CCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCCCC
Q 012015 340 YGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (473)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~ 418 (473)
||+||++..+.... ........++|+|+ ++.+++|+| +++++++.|+.|||+|+|+++++||+++|+.|.+.|..++
T Consensus 334 YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~ 411 (617)
T 3rg2_A 334 FGMAEGLVNYTRLD-DSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANG 411 (617)
T ss_dssp EEETTEEEEECCTT-SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTS
T ss_pred eccCcceeecccCC-CcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCC
Confidence 99999986544321 11112235789997 788999999 7899999999999999999999999999999999999999
Q ss_pred eeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 419 ~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
||+|||+|++++||+|+++||.||+||++|++|+|.|||++|.+||+|.+|+|++
T Consensus 412 ~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~ 466 (617)
T 3rg2_A 412 FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVS 466 (617)
T ss_dssp CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEE
T ss_pred ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999974
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=7.2e-71 Score=555.03 Aligned_cols=422 Identities=22% Similarity=0.311 Sum_probs=358.3
Q ss_pred CCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 117 (473)
.|+.+.|.+.++++ ||++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 4 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 76 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQ----ADFPVYDCL--GERRTYGQLKRDSDSIAAFIDS-LALLAKSPVLVFGAQTYDMLATFVALTK 76 (521)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TCCCTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCcceecC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999 999999998 8999999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcCCCeEEEEcCCChhhhhcccCCCccccccccCCCCEEEE
Q 012015 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (473)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 197 (473)
+|++++|+++.++.+++.+++++++++++|++++....+.. ...+.+. .+....... ..........+++++++
T Consensus 77 ~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~--~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~d~a~i 150 (521)
T 3l8c_A 77 SGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG--ISLVSLS--EIESAKLAE--MPYERTHSVKGDDNYYI 150 (521)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT--SEEEEHH--HHHHHHHHT--CCCCCSSCCCTTSEEEE
T ss_pred hCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccccc--Ccccchh--hhhhccccc--CCcccCCCCCCCCcEEE
Confidence 99999999999999999999999999999998765432221 1222111 111111111 11122334567899999
Q ss_pred EccCCCCCCcchhhhcHHHHHHHHHHhhccC-CCCCCCcEEEEecChhhHHhHHHHHHHhhhcCeEEEecCC---CHHHH
Q 012015 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASS-PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF---DLKMM 273 (473)
Q Consensus 198 ~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~-~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~~---~~~~~ 273 (473)
+|||||||.||+|+++|+++........... ......+++++..|++|..++..++.++..|+++++.+.+ ++..+
T Consensus 151 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~ 230 (521)
T 3l8c_A 151 IFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQL 230 (521)
T ss_dssp EECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHH
T ss_pred EEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHH
Confidence 9999999999999999999998777655441 2677889999999999999988889999999999998764 89999
Q ss_pred HHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCccccccccccc
Q 012015 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (473)
Q Consensus 274 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~ 353 (473)
++.+.++++|++.++|+++..+.........+++++|.+++||+++++++.+++.+.++++++++.||+||++.+++...
T Consensus 231 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~ 310 (521)
T 3l8c_A 231 FTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIE 310 (521)
T ss_dssp HHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEE
T ss_pred HHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceee
Confidence 99999999999999999999998877666777899999999999999999999999999999999999999988765432
Q ss_pred CCC---CCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCcccccccc---CCCCeeecCceEE
Q 012015 354 GPD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL---LPDGWMRTGDLCY 427 (473)
Q Consensus 354 ~~~---~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~~~~~TgD~~~ 427 (473)
... ......++|+|+++++++|+| +++++++.|+.|||+|+|+.++.||+++++.|.+.| +.+|||+|||+|+
T Consensus 311 ~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~ 389 (521)
T 3l8c_A 311 ITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGS 389 (521)
T ss_dssp ECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEE
T ss_pred cccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEE
Confidence 111 122346899999999999999 789999999999999999999999999999999887 4568999999999
Q ss_pred EccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 428 IDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 428 ~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
+|+||++++.||.||+||++|++|+|.|||++|.++|.|.+|+|++
T Consensus 390 ~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~ 435 (521)
T 3l8c_A 390 LTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVP 435 (521)
T ss_dssp ECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEEC
T ss_pred EeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEE
Confidence 9999999999999999999999999999999999999999999985
No 24
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2e-70 Score=563.93 Aligned_cols=427 Identities=19% Similarity=0.277 Sum_probs=359.1
Q ss_pred CHHHHhcccccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhH-HhcCCCCCCEEEEEeCCCCcHHHHHH
Q 012015 39 SAVDYVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQ-NVTRLSKNDTAFVLSTNSIEIPILYF 113 (473)
Q Consensus 39 ~l~~~~~~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~~~~la~~L~-~~~g~~~gd~V~i~~~~~~~~~~~~l 113 (473)
++.++|.++++++ ||++|+++. +.++++||+||.++++++|+.|+ + +|+++||+|+|+++|++++++++|
T Consensus 83 ~~~~~l~~~a~~~----pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-~Gv~~Gd~V~i~~~~~~e~v~a~l 157 (663)
T 1ry2_A 83 ACYNCVDRHALKT----PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-MGVRKGDTVAVYMPMVPEAIITLL 157 (663)
T ss_dssp HHHHHTHHHHTTC----TTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-SCCCTTCEEEECCCSSHHHHHHHH
T ss_pred HHHHHHHHHhccC----CCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4556776778888 999999973 23578999999999999999999 7 899999999999999999999999
Q ss_pred HHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHH---------HHh----cC-CC-eEEEEcCC---------
Q 012015 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---------KLA----KL-KH-RTILIDSP--------- 169 (473)
Q Consensus 114 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~----~~-~~-~~~~~~~~--------- 169 (473)
||+++|++++|+++.++.+++.+++++++++++|+++.... .+. .. .. .+++++..
T Consensus 158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 237 (663)
T 1ry2_A 158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHA 237 (663)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCS
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCC
Confidence 99999999999999999999999999999999999865421 111 11 11 34444321
Q ss_pred ----ChhhhhcccCCCccccccccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhh-ccCCCCCCCcEEEEecChh
Q 012015 170 ----EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF-ASSPKRVSPAVMLFTMPYF 244 (473)
Q Consensus 170 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~-~~~~~~~~~~~~l~~~pl~ 244 (473)
.+.++..... .........++++++|+|||||||.||||+++|++++....... ..+ ...+++++++.+|++
T Consensus 238 ~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~ 314 (663)
T 1ry2_A 238 PRDLDWATEKKKYK--TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-DTHQEDVFFTAGDIG 314 (663)
T ss_dssp SSEEEHHHHHTTSC--SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-CCCSSCEEEECSCTT
T ss_pred CccccHHHHHhhcC--CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-CCCCCcEEEEcCCcH
Confidence 1222222111 01222334578999999999999999999999999887664333 334 678899999999999
Q ss_pred hHHhH-HHHHHHhhhcCeEEEecC----CCHHHHHHHHHHcccceEEecHHHHHHHhcCCC--CCCCCCCCceEEEecCC
Q 012015 245 HIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAA 317 (473)
Q Consensus 245 ~~~g~-~~~l~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~~G~ 317 (473)
|+.+. +.++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|.+... ....++++||.+++|||
T Consensus 315 ~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 315 WITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGE 394 (663)
T ss_dssp SHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSS
T ss_pred HhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcC
Confidence 99998 778899999999999864 589999999999999999999999999988754 24557899999999999
Q ss_pred CCCHHHHHHHHHhCC--CCeEEeecCCcccccccccccC-CCCCCCCCCccccCCCcEEEEEcCCCCCCCCC-CCccEEE
Q 012015 318 PLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVG-PDECRRWGSTGRLSAGLEAKIVDPETGDSLPP-GKEGELS 393 (473)
Q Consensus 318 ~l~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-g~~Gel~ 393 (473)
++++++++++.+.++ ++++++.||+||++.+++.... .......+++|+|++|++++|+|+++|++++. |+.|||+
T Consensus 395 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~ 474 (663)
T 1ry2_A 395 PIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLA 474 (663)
T ss_dssp CCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEE
T ss_pred CCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEE
Confidence 999999999999883 3899999999999876665332 12334568999999999999999548999988 9999999
Q ss_pred Eec--CccccccCCCccccccccCC--CCeeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceE
Q 012015 394 IRG--PTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADA 469 (473)
Q Consensus 394 v~~--~~~~~gy~~~~~~~~~~~~~--~~~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~ 469 (473)
|+| |+++.||+++++.+.+.|.. +|||+|||+|++|+||+|+|+||+||+||++|++|++.|||++|.+||.|.+|
T Consensus 475 i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea 554 (663)
T 1ry2_A 475 VKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAEC 554 (663)
T ss_dssp ESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEE
T ss_pred EecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceE
Confidence 999 58999999999998887754 78999999999999999999999999999999999999999999999999999
Q ss_pred EEcC
Q 012015 470 AVIP 473 (473)
Q Consensus 470 ~vvg 473 (473)
+|+|
T Consensus 555 ~Vvg 558 (663)
T 1ry2_A 555 AVVG 558 (663)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9986
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.8e-69 Score=542.17 Aligned_cols=412 Identities=23% Similarity=0.320 Sum_probs=346.9
Q ss_pred CCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 117 (473)
+|+.++|.++++++ ||++|+++. ++++||+||.++++++|++|++ . +||+|+++++|++++++++|||++
T Consensus 1 mtl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~---~gd~V~i~~~n~~e~~~~~lA~~~ 70 (501)
T 3ipl_A 1 MSLDFWLYKQAQQN----GHHIAITDG--QESYTYQNLYCEASLLAKRLKA-Y---QQSRVGLYIDNSIQSIILIHACWL 70 (501)
T ss_dssp --CCCHHHHHHHHH----TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHT-T---CCSEEEEECCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc----CCceEEEeC--CcEEEHHHHHHHHHHHHHHHHH-c---CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 47788999999999 999999998 8899999999999999999998 4 899999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcC----CCeEEEEc----C-------CChhhh---hcccC
Q 012015 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILID----S-------PEFDSM---TMSWN 179 (473)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~----~-------~~~~~~---~~~~~ 179 (473)
+|++++|+++.++.+++.+++++++++++|++.+........ ....+... . ..+... .....
T Consensus 71 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (501)
T 3ipl_A 71 ANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKE 150 (501)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------C
T ss_pred cCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccC
Confidence 999999999999999999999999999999987654332110 00000000 0 000000 00000
Q ss_pred CCccccccccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHHHHHHHhhhc
Q 012015 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM 259 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G 259 (473)
...........++++++++|||||||.||+|.++|+++..........+ +..+++++++.+|++|.+++..++.++..|
T Consensus 151 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G 229 (501)
T 3ipl_A 151 SPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWLSVLPIYHISGLSVLLRAVIEG 229 (501)
T ss_dssp CHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEEECSCTTSHHHHHHHHHHHHHT
T ss_pred CcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEEEeCcHHHHHHHHHHHHHHHcC
Confidence 0001112335678999999999999999999999999999888877777 788999999999999999998889999999
Q ss_pred CeEEEecCCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEee
Q 012015 260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (473)
Q Consensus 260 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~ 339 (473)
+++++.+.+++..+++.|+++++|++.++|+++..|.+...... .++|.+++||+++++++.+++.+. ++++++.
T Consensus 230 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~ 304 (501)
T 3ipl_A 230 FTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNS 304 (501)
T ss_dssp CEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEE
T ss_pred ceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEecc
Confidence 99999999999999999999999999999999999988764433 289999999999999999999884 8999999
Q ss_pred cCCcccccccccccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCCCCe
Q 012015 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (473)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 419 (473)
||+||++..+............+++|+|+++++++|+|++ +|+.|||+|+|+.+++||+++++.+.. | .+||
T Consensus 305 YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~ 376 (501)
T 3ipl_A 305 FGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGY 376 (501)
T ss_dssp EEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTE
T ss_pred ccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCc
Confidence 9999998765543222222355789999999999999954 466799999999999999999999987 5 6899
Q ss_pred eecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 420 ~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
|+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|+|
T Consensus 377 ~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~ 430 (501)
T 3ipl_A 377 FNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVG 430 (501)
T ss_dssp EEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred eecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence 999999999999999999999999999999999999999999999999999985
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.4e-69 Score=542.15 Aligned_cols=408 Identities=24% Similarity=0.354 Sum_probs=344.6
Q ss_pred CCHHHHhcccccCCCCCCCC-CcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDD-TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~ 116 (473)
.|+.+.|.++++++ |+ ++|+++. ++++||+||.++++++|..|. .|++|+++++|++++++++|||+
T Consensus 22 ~tl~~~l~~~a~~~----p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~------~~~~V~i~~~~~~~~~~~~la~~ 89 (505)
T 3nyq_A 22 SSLFPALSPAPTGA----PADRPALRFG--ERSLTYAELAAAAGATAGRIG------GAGRVAVWATPAMETGVAVVAAL 89 (505)
T ss_dssp --CCTTTSSCCCSG----GGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC---------CEEEECCSSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhC----CCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc------CCCEEEEEcCCCHHHHHHHHHHH
Confidence 68899999999888 65 9999998 899999999999999998874 27899999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcCCCeEEEEcCCChhhhhcccCCCccccccccCCCCEEE
Q 012015 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (473)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (473)
++|++++|++|.++.+++.+++++++++++|++.+............+.++... ..........++++++
T Consensus 90 ~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~d~a~ 159 (505)
T 3nyq_A 90 LAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRA----------RGAVPEDGADDGDPAL 159 (505)
T ss_dssp HHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTTC----------CCCCCCCCCCTTSEEE
T ss_pred HhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhcccccccccccc----------ccCCCCCCCCCCCeEE
Confidence 999999999999999999999999999999998652110001112222222110 0011223456789999
Q ss_pred EEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhH-HHHHHHhhhcCeEEEecCCCHHHHHH
Q 012015 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLK 275 (473)
Q Consensus 197 i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~-~~~l~~l~~G~~~v~~~~~~~~~~~~ 275 (473)
++|||||||.||+|.++|+++..........+ ...+++++++.+|++|..++ ..++.++..|+++++.+.+++..+++
T Consensus 160 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~ 238 (505)
T 3nyq_A 160 VVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR 238 (505)
T ss_dssp EEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHH
T ss_pred EEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHH
Confidence 99999999999999999999999888877766 68889999999999999998 56899999999999999999999999
Q ss_pred HHHHcccceEEecHHHHHHHhcCCCCC---CCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCcccccccccc
Q 012015 276 AVEEFRVTHAAVTPPIVVAMSKGGSTD---GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (473)
Q Consensus 276 ~i~~~~~t~~~~~P~~~~~l~~~~~~~---~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~ 352 (473)
.+ ++++|+++++|+++..+++..... ...++++|.+++||+++++++.+++.+.+ ++++++.||+||++..+...
T Consensus 239 ~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~ 316 (505)
T 3nyq_A 239 EL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVR 316 (505)
T ss_dssp HH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECC
T ss_pred HH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccC
Confidence 99 889999999999999998743211 22367889999999999999999999987 88999999999998766542
Q ss_pred cCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCC---CCccEEEEecCccccccCCCccccccccCCCCeeecCceEEEc
Q 012015 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP---GKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429 (473)
Q Consensus 353 ~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~---g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~ 429 (473)
.......+++|+|+++++++|+| +++++++. |+.|||+|+|++++.||+++|+.|.+.|..+|||+|||+|+++
T Consensus 317 --~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~ 393 (505)
T 3nyq_A 317 --ADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRD 393 (505)
T ss_dssp --TTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEEC
T ss_pred --CCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEEC
Confidence 23334567999999999999999 67888876 8999999999999999999999999999889999999999999
Q ss_pred cCCcEEEEecc-CCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 430 EDGFLFIVDRL-KDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 430 ~~g~l~~~GR~-~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
+||+++++||+ ||+||++|++|+|.|||++|.++|+|.+|+|+|
T Consensus 394 ~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~ 438 (505)
T 3nyq_A 394 PDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTG 438 (505)
T ss_dssp TTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred CCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEe
Confidence 99999999998 599999999999999999999999999999985
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=9.4e-68 Score=582.30 Aligned_cols=417 Identities=22% Similarity=0.269 Sum_probs=361.3
Q ss_pred CCHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 117 (473)
.++.++|.++++++ ||++|+++. ++++||+||.++++++|+.|++ .|+++|++|+|+++|++++++++|||++
T Consensus 464 ~~l~~~~~~~~~~~----p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vv~~lailk 536 (1304)
T 2vsq_A 464 KPLTYWFKEAVNAN----PDAPALTYS--GQTLSYRELDEEANRIARRLQK-HGAGKGSVVALYTKRSLELVIGILGVLK 536 (1304)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEESS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHh-cCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999988 8999999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcCC--CeEEEEcCCChhhhhcccCCCccccccccCCCCEE
Q 012015 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (473)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (473)
+|+++||++|.++.+++.++++++++++++++.........+. ...+.++.. ..... . . ........+++++
T Consensus 537 aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~-~-~~~~~~~~~~~~a 610 (1304)
T 2vsq_A 537 AGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ--TRFEE--Q-A-SDPATAIDPNDPA 610 (1304)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG--GGGGS--C-S-SCCCCCCCTTSEE
T ss_pred HCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc--ccccc--c-c-CCCCCCCCCCCeE
Confidence 9999999999999999999999999999999987655433221 222332221 11110 0 1 1122345678999
Q ss_pred EEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHHHHHHHhhhcCeEEEecC---CCHHH
Q 012015 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKM 272 (473)
Q Consensus 196 ~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~---~~~~~ 272 (473)
+|+|||||||.||||+++|+++.+. ......+ ...++++++...|++|..+.+.++.++..|+++++.+. +++..
T Consensus 611 yiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~ 688 (1304)
T 2vsq_A 611 YIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTER 688 (1304)
T ss_dssp EEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHH
T ss_pred EEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHH
Confidence 9999999999999999999999876 3344444 67889999999999999888899999999999999874 68999
Q ss_pred HHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCcccccccccc
Q 012015 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (473)
Q Consensus 273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~ 352 (473)
+.+.|.++++|+++++|+++..+.+... ..++++|.+++|||++++++.++|.+.+++.+++|.||+||++.+++..
T Consensus 689 l~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 765 (1304)
T 2vsq_A 689 LTDLILQENVNVMFATTALFNLLTDAGE---DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAH 765 (1304)
T ss_dssp HHHHHHHHTCCEEEEEHHHHHHHHHHCS---HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEccHHHHHHHHhhch---hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheee
Confidence 9999999999999999999999976431 2367899999999999999999999988778999999999999877654
Q ss_pred cCCC--CCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCC------CCeeecCc
Q 012015 353 VGPD--ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------DGWMRTGD 424 (473)
Q Consensus 353 ~~~~--~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~~~~~TgD 424 (473)
.... ......++|+|++|++++|+| +.+++++.|..|||+|+|+++++||+++|+.|.++|.. ++||+|||
T Consensus 766 ~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGD 844 (1304)
T 2vsq_A 766 VVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGD 844 (1304)
T ss_dssp ECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEE
T ss_pred eccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCC
Confidence 3222 222346899999999999999 78999999999999999999999999999999998853 35999999
Q ss_pred eEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 425 ~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
+|++++||+|+++||+||+||++|++|+|.|||++|.++|+|.+|+|++
T Consensus 845 l~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~ 893 (1304)
T 2vsq_A 845 LARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVA 893 (1304)
T ss_dssp EEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEE
T ss_pred eEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999999974
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1e-68 Score=547.84 Aligned_cols=422 Identities=23% Similarity=0.308 Sum_probs=356.6
Q ss_pred CCHHHHhcccccCCCCCCCCCcEEEECC--CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDDTVALINSV--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~ 115 (473)
.|+.++|.++++++ ||++|+++.. .++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||
T Consensus 11 ~tl~~~l~~~a~~~----p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~ 85 (590)
T 3kxw_A 11 QSLVDVVRLRALHS----PNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVLLLFAPGLPLIQAFLGC 85 (590)
T ss_dssp SSHHHHHHHHHHHC----TTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhC----CCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHH
Confidence 79999999999999 9999998632 25899999999999999999999 89999999999999999999999999
Q ss_pred HHhCCeEecCCCCCC---HHHHHHHHhhcCCeEEEEccchHHHHhcCCC-------eEEEEcCCChhhhhcccCCCcccc
Q 012015 116 LSLGVIISPANPVNT---ESEISRQIQLSNPVIAFATSSVVHKLAKLKH-------RTILIDSPEFDSMTMSWNSKHELD 185 (473)
Q Consensus 116 ~~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 185 (473)
+++|++++|++|.++ .+++.++++.+++++++++.+....+..... ....+. .+.+.... .....
T Consensus 86 ~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~ 160 (590)
T 3kxw_A 86 LYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA---LESIELNR--SSSWQ 160 (590)
T ss_dssp HHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE---GGGCCGGG--GGGCC
T ss_pred HHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee---chhccccc--cccCC
Confidence 999999999999884 5789999999999999999887766543210 011111 11111100 11122
Q ss_pred ccccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHHH-HHHHhhhcCeEEE
Q 012015 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF-CFRAAALMETAVV 264 (473)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~ 264 (473)
.....++++++|+|||||||.||||+++|+++...+......+ +..+++++++.+|++|.+++.. ++.++..|+++++
T Consensus 161 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 161 PTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 3345678999999999999999999999999999998887777 7889999999999999999965 8899999999999
Q ss_pred ecCC----CHHHHHHHHHHcccceEEecHHHHHHHhcCCC---CCCCCCCCceEEEecCCCCCHHHHHHHHHhCC-----
Q 012015 265 MQRF----DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS---TDGYDLSSLETVACGAAPLGKDTIMAFASKFP----- 332 (473)
Q Consensus 265 ~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~----- 332 (473)
.+++ ++..+++.|+++++|++.++|+++..+.+... ....+++++|.+++||+++++++.++|.+.++
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~ 319 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFR 319 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCC
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCC
Confidence 8865 88999999999999999999999998877532 34567899999999999999999999999873
Q ss_pred CCeEEeecCCcccccccccccCC-------------------------CCCCCCCCccccCCCcEEEEEcCCCCCCCCCC
Q 012015 333 KVVLVQAYGLTESTAGVFRTVGP-------------------------DECRRWGSTGRLSAGLEAKIVDPETGDSLPPG 387 (473)
Q Consensus 333 ~~~~~~~yG~tE~~~~~~~~~~~-------------------------~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g 387 (473)
+.++++.||+||++.+++..... .......++|+|+++ ++|+|++++.+++.|
T Consensus 320 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g 397 (590)
T 3kxw_A 320 KEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFD 397 (590)
T ss_dssp GGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTT
T ss_pred ccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCC
Confidence 45799999999999876643211 011223588999998 888997779999999
Q ss_pred CccEEEEecCccccccCCCccccccccCC------CC--eeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHH
Q 012015 388 KEGELSIRGPTIMKGYVGEPEVTSATLLP------DG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHL 459 (473)
Q Consensus 388 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~~--~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~ 459 (473)
+.|||+|+|+.++.||+++|+.|++.|.. +| ||+|||+|++| ||+|+++||+||+||++|++|+|.|||.+
T Consensus 398 ~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~ 476 (590)
T 3kxw_A 398 QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFS 476 (590)
T ss_dssp BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHH
T ss_pred CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHH
Confidence 99999999999999999999999999864 24 99999999998 99999999999999999999999999999
Q ss_pred H-hcCCCcc--eEEEcC
Q 012015 460 L-LSHREVA--DAAVIP 473 (473)
Q Consensus 460 l-~~~~~v~--~~~vvg 473 (473)
| ..+|.|. +|+|++
T Consensus 477 l~~~~~~v~~~~~~v~~ 493 (590)
T 3kxw_A 477 LMHSPLHHVLGKCAAFV 493 (590)
T ss_dssp HHHSGGGGGEEEEEEEE
T ss_pred HHhcCccccCccEEEEE
Confidence 9 8889998 788764
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=7.6e-68 Score=540.28 Aligned_cols=423 Identities=20% Similarity=0.309 Sum_probs=355.2
Q ss_pred CCHHHHhcccccCCCCCCCCCcEEEECC-CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDDTVALINSV-TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~~~a~~~~~-~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~ 116 (473)
.|+.+++.++++++ |+++++.+.. .++++||+||.++++++|++|++ +|+++||+|+++++|++++++++|||+
T Consensus 21 ~tl~~~l~~~a~~~----p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 95 (576)
T 3gqw_A 21 PTLVDALDYAALSS----AGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLS-LNLKKGDRVALIAETSSEFVEAFFACQ 95 (576)
T ss_dssp SSHHHHHHHHTTSS----CEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHH-TCCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhCC----CCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 69999999999998 9888875532 24799999999999999999999 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCC-------HHHHHHHHhhcCCeEEEEccchHHHHhcC---CCeEEEEcCCChhhhhcccCCCccccc
Q 012015 117 SLGVIISPANPVNT-------ESEISRQIQLSNPVIAFATSSVVHKLAKL---KHRTILIDSPEFDSMTMSWNSKHELDR 186 (473)
Q Consensus 117 ~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (473)
++|++++|+++.++ .+++.++++.+++++++++.+....+... ......+.. .+. .... ......
T Consensus 96 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~-~~~~~~ 170 (576)
T 3gqw_A 96 YAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSH-AWF---KALP-EADVAL 170 (576)
T ss_dssp HTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEH-HHH---HTSC-CCCCCC
T ss_pred HhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecch-hhh---hccc-cccccc
Confidence 99999999999998 89999999999999999998876655421 111111110 000 0001 112222
Q ss_pred cccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHH-HHHHHhhhcCeEEEe
Q 012015 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVM 265 (473)
Q Consensus 187 ~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~l~~l~~G~~~v~~ 265 (473)
....++++++++|||||||.||+|.++|+++...............+++++++.+|++|.+++. .++.++..|+++++.
T Consensus 171 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~ 250 (576)
T 3gqw_A 171 QRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYL 250 (576)
T ss_dssp CCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEEC
T ss_pred CCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEc
Confidence 3446789999999999999999999999999988877655423688999999999999999984 467788889998887
Q ss_pred cC----CCHHHHHHHHHHcccceEEecHHHHHHHhcCCC---CCCCCCCCceEEEecCCCCCHHHHHHHHHhCC-----C
Q 012015 266 QR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS---TDGYDLSSLETVACGAAPLGKDTIMAFASKFP-----K 333 (473)
Q Consensus 266 ~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~-----~ 333 (473)
+. +++..+++.++++++|+++++|+++..+.+... ....+++++|.+++||+++++++.++|.+.++ +
T Consensus 251 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~ 330 (576)
T 3gqw_A 251 RTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDN 330 (576)
T ss_dssp CHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCG
T ss_pred chhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCc
Confidence 64 588999999999999999999999988876543 23456899999999999999999999999874 7
Q ss_pred CeEEeecCCcccccccccccCCCCC--------------------------CCCCCccccCCCcEEEEEcCCCCCCCCCC
Q 012015 334 VVLVQAYGLTESTAGVFRTVGPDEC--------------------------RRWGSTGRLSAGLEAKIVDPETGDSLPPG 387 (473)
Q Consensus 334 ~~~~~~yG~tE~~~~~~~~~~~~~~--------------------------~~~~~~G~p~~~~~~~i~d~~~~~~~~~g 387 (473)
..+++.||+||++.+++........ ....++|+|+++++++|+| +++++++.|
T Consensus 331 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g 409 (576)
T 3gqw_A 331 KTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAER 409 (576)
T ss_dssp GGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTT
T ss_pred ccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCC
Confidence 8899999999999877653211100 0112789999999999999 899999999
Q ss_pred CccEEEEecCccccccCCCccccccccCCCCeeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcc
Q 012015 388 KEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVA 467 (473)
Q Consensus 388 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~ 467 (473)
+.|||+|+|+.+++||+++++.+.+.+ .+|||+|||+|++ +||+++++||.||+||++|++|+|.|||++|.+||.|.
T Consensus 410 ~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~ 487 (576)
T 3gqw_A 410 VVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIH 487 (576)
T ss_dssp BCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCC
T ss_pred CeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccc
Confidence 999999999999999999998887755 6899999999999 79999999999999999999999999999999999999
Q ss_pred eEEEcC
Q 012015 468 DAAVIP 473 (473)
Q Consensus 468 ~~~vvg 473 (473)
+|+|++
T Consensus 488 ~~~vv~ 493 (576)
T 3gqw_A 488 SGDAIA 493 (576)
T ss_dssp TTSEEE
T ss_pred cccEEE
Confidence 877663
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=2.3e-67 Score=534.18 Aligned_cols=422 Identities=18% Similarity=0.208 Sum_probs=318.8
Q ss_pred CCCHHHHhcccccCCCCCCCCCcEEEECCC--------CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcH
Q 012015 37 PISAVDYVSSLRATLPWRDDDTVALINSVT--------GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI 108 (473)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~p~~~a~~~~~~--------~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~ 108 (473)
.+|+.++|.++++++ ||++|+++... ++++||+||.++++++|+.|.+ .|+ +||+|+++++|++++
T Consensus 19 ~~tl~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 19 TVPPSHYIETWAKTH----PEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH-ASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp CCCTTHHHHHHHHHC----TTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHH-TTC-SSCEEEEECCSCHHH
T ss_pred cCCHHHHHHHHHHHC----CCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEeCCCHHH
Confidence 389999999999999 99999987421 2789999999999999999998 898 799999999999999
Q ss_pred HHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHHHHhcC-CCeEEEEcCCChhhhhcccCCCcccccc
Q 012015 109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRA 187 (473)
Q Consensus 109 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (473)
++++|||+++|++++|+++.++.+++.+++++++++++|+++......... ....+..+...+......... .....
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 170 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDT--SDILN 170 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHHSCC--SCCCC
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhcccccc--ccccc
Confidence 999999999999999999999999999999999999999987654433211 112222222222222221111 11223
Q ss_pred ccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccC-------CCCCCCcEEEEecChhhHHhHHHHHHHhhhcC
Q 012015 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-------PKRVSPAVMLFTMPYFHIYGLFFCFRAAALME 260 (473)
Q Consensus 188 ~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~-------~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~ 260 (473)
...++++++++|||||||.||+|+++|+++..........+ ......+++++..|+.|..++..++.++..|+
T Consensus 171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 250 (562)
T 3ite_A 171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGL 250 (562)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhccc
Confidence 34567889999999999999999999999988766543321 13667889999999999888888889999999
Q ss_pred eEEEecCCC-HHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEee
Q 012015 261 TAVVMQRFD-LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (473)
Q Consensus 261 ~~v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~ 339 (473)
++++.+.+. +..+.+.++++++|++.++|++++.+... ..+++++|.+++||+++++++.++|.+.+ ++.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~ 325 (562)
T 3ite_A 251 CAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNV 325 (562)
T ss_dssp EEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEE
T ss_pred EEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEe
Confidence 999887643 57788999999999999999999887543 33578999999999999999999999876 8999999
Q ss_pred cCCcccccccccccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCCCC-
Q 012015 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG- 418 (473)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~- 418 (473)
||+||++..++..... ......++|+|+++++++|+|++++.++++|+.|||+|+|+.+++||+++|+.+...+ .+|
T Consensus 326 YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~ 403 (562)
T 3ite_A 326 YGPTEVTIGCSAGRIL-PDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCD-INGR 403 (562)
T ss_dssp ECCGGGCSCSEEEECC-TTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEE-ETTE
T ss_pred eccchheeeeeeeeec-CCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccccc-CCCC
Confidence 9999998776654322 2234578999999999999998889999999999999999999999999999998765 355
Q ss_pred -eeecCceEEEccCCcEEEEeccCCeEEEcCeeeChHHHHHHHhcC-CCcceEEEcC
Q 012015 419 -WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSH-REVADAAVIP 473 (473)
Q Consensus 419 -~~~TgD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~-~~v~~~~vvg 473 (473)
||+|||+|++|+||+|+++||+||+||++|++|+|.|||++|.++ |.+.+|+|++
T Consensus 404 ~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~ 460 (562)
T 3ite_A 404 KMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLL 460 (562)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEC----------------------------------
T ss_pred EEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEE
Confidence 999999999999999999999999999999999999999999998 7777777653
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.4e-63 Score=497.49 Aligned_cols=385 Identities=21% Similarity=0.280 Sum_probs=316.4
Q ss_pred CCHHHHhcccccCCCCCCCCCcEEEECC-----CC--ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHH
Q 012015 38 ISAVDYVSSLRATLPWRDDDTVALINSV-----TG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (473)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~ 110 (473)
.|+.++|.++++++ ||++|+++.. ++ +++||+||.++++++|++|++ .|+ +||+|+|+++|++++++
T Consensus 24 ~tl~~~l~~~a~~~----pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~e~~~ 97 (480)
T 3t5a_A 24 RSLPAALRACARLQ----PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR-CGS-TGDRVVISAPQGLEYVV 97 (480)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT-SSC-TTCEEEEECCSSHHHHH
T ss_pred ccHHHHHHHHHHhC----CCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEcCCcHHHHH
Confidence 79999999999999 9999998752 12 799999999999999999998 896 99999999999999999
Q ss_pred HHHHHHHhCCeEecCCC---CCCHHHHHHHHhhcCCeEEEEccchHHHHhcCCC--------eEEEEcCCChhhhhcccC
Q 012015 111 LYFSLLSLGVIISPANP---VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH--------RTILIDSPEFDSMTMSWN 179 (473)
Q Consensus 111 ~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 179 (473)
++|||+++|+++||+++ .++.+++.+++++++++++|++......+.+... .++.++... .. .
T Consensus 98 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~ 171 (480)
T 3t5a_A 98 AFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD-----LD-A 171 (480)
T ss_dssp HHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC-----TT-C
T ss_pred HHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc-----cc-c
Confidence 99999999999999999 7889999999999999999999988776654321 122221110 00 0
Q ss_pred CCccccccccCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCC------CcEEEEecChhhHHhH-HHH
Q 012015 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS------PAVMLFTMPYFHIYGL-FFC 252 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~------~~~~l~~~pl~~~~g~-~~~ 252 (473)
..........++++++|+|||||||.||||+++|+++...+......+ .... ++++++.+|++|.+++ ..+
T Consensus 172 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 249 (480)
T 3t5a_A 172 -PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADTDGIPPPNSALVSWLPFYHDMGLVIGI 249 (480)
T ss_dssp -C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTTTTTCCCTTEEEEECCCTTSTTHHHHHT
T ss_pred -ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-ccccccCCCCCCeEEEeCCCcCccHHHHHH
Confidence 112223345678999999999999999999999999988887766554 3444 8999999999999997 568
Q ss_pred HHHhhhcCeEEEecCC----CHHHHHHHHHHcccceEEecHHHHHHHhcC----CCCCCCCCCCceEEEecCCCCCHHHH
Q 012015 253 FRAAALMETAVVMQRF----DLKMMLKAVEEFRVTHAAVTPPIVVAMSKG----GSTDGYDLSSLETVACGAAPLGKDTI 324 (473)
Q Consensus 253 l~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----~~~~~~~l~~lr~v~~~G~~l~~~~~ 324 (473)
+.++..|+++++.+++ ++..+++.++++++| +..+|+++..++.. ......++++||.+++||+++++++.
T Consensus 250 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~ 328 (480)
T 3t5a_A 250 CAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATI 328 (480)
T ss_dssp HHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHH
T ss_pred HHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHH
Confidence 9999999999998753 899999999999999 78888888777653 22345678999999999999999999
Q ss_pred HHHHHhC-----CCCeEEeecCCcccccccccccCCCC-----------------------CCCCCCccccCCCcEEEEE
Q 012015 325 MAFASKF-----PKVVLVQAYGLTESTAGVFRTVGPDE-----------------------CRRWGSTGRLSAGLEAKIV 376 (473)
Q Consensus 325 ~~~~~~~-----~~~~~~~~yG~tE~~~~~~~~~~~~~-----------------------~~~~~~~G~p~~~~~~~i~ 376 (473)
++|.+.+ +++.+++.||+||++.+++....... .....++|+|++ ++++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~iv 407 (480)
T 3t5a_A 329 KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIV 407 (480)
T ss_dssp HHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEE
T ss_pred HHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEE
Confidence 9999998 35689999999999987765432211 123358999999 999999
Q ss_pred cCCCCCCCCCCCccEEEEecCccccccCCCccccccccC-----------CCCeeecCceEEEccCCcEEEEec
Q 012015 377 DPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL-----------PDGWMRTGDLCYIDEDGFLFIVDR 439 (473)
Q Consensus 377 d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~TgD~~~~~~~g~l~~~GR 439 (473)
|++++++++.|+.|||+|+|+++++||+++|+.|++.|. .+|||+|||+|+++ ||+|+|+||
T Consensus 408 d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 408 DSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp ETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 977789999999999999999999999999999999985 46799999999996 999999998
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.8e-44 Score=354.45 Aligned_cols=266 Identities=22% Similarity=0.228 Sum_probs=226.4
Q ss_pred cCC-CCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhh---ccCCCCCCCcEEEEecChhhHHhH-HHHHHHhhhcCeEE
Q 012015 189 VCQ-SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF---ASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAV 263 (473)
Q Consensus 189 ~~~-~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl~~~~g~-~~~l~~l~~G~~~v 263 (473)
..+ +++++++|||||||.||+|.++|+++........ ... +..+++++++.+|+.|..+. ...+.++..|++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 344 7899999999999999999999999977665442 233 67889999999998665554 66788899999999
Q ss_pred EecCCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCC--CCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecC
Q 012015 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY--DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (473)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG 341 (473)
+.+.+++..+++.|+++++|+++++|+++..|++....... .++++|.+++|||++++++.+++.+.| ++++++.||
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 239 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFG 239 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCc
Confidence 99888999999999999999999999999999876543333 378999999999999999999999998 899999999
Q ss_pred CcccccccccccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCCCCeee
Q 012015 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (473)
Q Consensus 342 ~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~ 421 (473)
+||+++.++.... ......|.|.++++++|+|+++++++++|+.|||+|+|. +.+.+ +++||+
T Consensus 240 ~TE~~~~~~~~~~----~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~-~~~~y~ 302 (436)
T 3qov_A 240 MTEMNGPGVAFEC----QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMM-PLIRYR 302 (436)
T ss_dssp EGGGTEEEEEEEC----TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSS-CCCSEE
T ss_pred chhhcCCeeEEec----CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCc-eEEEEE
Confidence 9999654332211 112347778889999999988999999999999999983 22334 678999
Q ss_pred cCceEEEccCC------c---EEEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 422 TGDLCYIDEDG------F---LFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 422 TgD~~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
|||+|+++++| + ++++||.||+||++|++|+|.+||++|.++|+|.+++|++
T Consensus 303 TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~ 363 (436)
T 3qov_A 303 TRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLIT 363 (436)
T ss_dssp EEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEE
T ss_pred cCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEE
Confidence 99999999998 6 6999999999999999999999999999999999998874
No 33
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.5e-44 Score=344.14 Aligned_cols=246 Identities=18% Similarity=0.224 Sum_probs=212.9
Q ss_pred CCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHhHHHHHHHhhhcCeEEEecCCCH
Q 012015 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDL 270 (473)
Q Consensus 191 ~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~~~~ 270 (473)
.+++++|+|||||||.||+|++||+++.+.+......+ +..+++++++.+|++|.+|+..++.++..|+++++.++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~-- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT-- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--
Confidence 47899999999999999999999999999988887777 788999999999999999998889999999999988642
Q ss_pred HHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCCcccccccc
Q 012015 271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350 (473)
Q Consensus 271 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~ 350 (473)
...++.|+++++|++.++|+++..|++... ...+++++|.+++||+++++++.+++++. ++++++.||+||++..+.
T Consensus 113 ~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 113 ANPLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp SCTTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred ccHHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 123567899999999999999999988754 33468999999999999999999999875 899999999999988766
Q ss_pred cccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCCCCeeecCceEEEcc
Q 012015 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430 (473)
Q Consensus 351 ~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~ 430 (473)
.... .....+.+|.+.|++++.+.+ .|||+++|+.. .+|||+|||+|++|+
T Consensus 190 ~~~~--~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGDlg~~d~ 240 (358)
T 4gs5_A 190 LKAL--NGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTNDLVEIHG 240 (358)
T ss_dssp EEEC--SSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEEEEEECS
T ss_pred cccc--cccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCCcccccc
Confidence 5332 233457899999999988754 49999988532 578999999999999
Q ss_pred CCcEEEEeccCCeEEEcCeeeChHHHHHHH---hcCCCcceEEEc
Q 012015 431 DGFLFIVDRLKDLIKYKGYQVAPAELEHLL---LSHREVADAAVI 472 (473)
Q Consensus 431 ~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l---~~~~~v~~~~vv 472 (473)
|| ++++||+||+||++|++|+|.|||++| .+||.|.+|+|+
T Consensus 241 ~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv 284 (358)
T 4gs5_A 241 NA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFC 284 (358)
T ss_dssp SE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred Cc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEE
Confidence 88 667799999999999999999999876 468999999886
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.4e-43 Score=347.23 Aligned_cols=266 Identities=23% Similarity=0.264 Sum_probs=224.3
Q ss_pred cCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhc---cCCCCCCCcEEEEecCh-hhHHhHHHHHHHhhhcCeEEE
Q 012015 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA---SSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (473)
Q Consensus 189 ~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~---~~~~~~~~~~~l~~~pl-~~~~g~~~~l~~l~~G~~~v~ 264 (473)
..++++++++|||||||.||+|.++|+++......... .+ +..+++++++.+|+ +|..++...+.++..|+++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 45678899999999999999999999998776544332 34 67889999999998 577777778899999999999
Q ss_pred ecCCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCC--CCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCC
Q 012015 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (473)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~ 342 (473)
.+.++++.+++.|+++++|++.++|+++..|++.......+ ++++|.+++||+++++++.+++.+.+ ++++++.||+
T Consensus 168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 246 (443)
T 2y4o_A 168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL 246 (443)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence 88889999999999999999999999999998754333333 47999999999999999999999988 8999999999
Q ss_pred cccccc-cccccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCCCCeee
Q 012015 343 TESTAG-VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (473)
Q Consensus 343 tE~~~~-~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~ 421 (473)
||+++. +..... . .....+.+.+++.++|+|+++++++++|+.|||+|+|. +.+.| +++||+
T Consensus 247 TE~~g~~~~~~~~-~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~~~y~ 309 (443)
T 2y4o_A 247 SEVMGPGVACECV-E---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PVIRYR 309 (443)
T ss_dssp TTTTEEEEEEECT-T---TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCSSEE
T ss_pred hhhcCCeEEeccC-C---CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hhheee
Confidence 997443 222111 1 11135667789999999987899999999999999972 23344 678999
Q ss_pred cCceEEEccC-CcE-----EEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 422 TGDLCYIDED-GFL-----FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 422 TgD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
|||+|+++++ |++ +++||.||+||++|++|+|.+||++|.++|+|.+++|++
T Consensus 310 TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~ 367 (443)
T 2y4o_A 310 TRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQIT 367 (443)
T ss_dssp EEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEE
T ss_pred cCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEE
Confidence 9999999999 987 899999999999999999999999999999999988763
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.8e-43 Score=347.51 Aligned_cols=266 Identities=26% Similarity=0.293 Sum_probs=224.1
Q ss_pred cCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhc---cCCCCCCCcEEEEecCh-hhHHhHHHHHHHhhhcCeEEE
Q 012015 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA---SSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (473)
Q Consensus 189 ~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~---~~~~~~~~~~~l~~~pl-~~~~g~~~~l~~l~~G~~~v~ 264 (473)
..++++++++|||||||.||+|+++|+++......... .+ +..+++++++.+|+ +|..++...+.++..|+++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 35678899999999999999999999998876543322 33 67889999999998 677777778899999999998
Q ss_pred ecCCCHHHHHHHHHHcccceEEecHHHHHHHhcCCCCCCCC--CCCceEEEecCCCCCHHHHHHHHHhCCCCeEEeecCC
Q 012015 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (473)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~ 342 (473)
.+.++++.+++.|+++++|+++++|+++..|++.......+ ++++|.+++||+++++++.+++.+.+ ++++++.||+
T Consensus 166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 244 (437)
T 2y27_A 166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGL 244 (437)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCc
Confidence 88889999999999999999999999999998764333333 47899999999999999999999988 8999999999
Q ss_pred cccccc-cccccCCCCCCCCCCccccCCCcEEEEEcCCCCCCCCCCCccEEEEecCccccccCCCccccccccCCCCeee
Q 012015 343 TESTAG-VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (473)
Q Consensus 343 tE~~~~-~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~ 421 (473)
||+++. +..... . .....+.|.+++.++|+|+++++++++|+.|||+|+|. +.+.| +++||+
T Consensus 245 TE~~g~~~~~~~~-~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~y~ 307 (437)
T 2y27_A 245 SEVMGPGVASECV-E---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIRYR 307 (437)
T ss_dssp TTTTEEEEEECCT-T---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCSEE
T ss_pred hhhcCCeeEEecC-C---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhheee
Confidence 998433 332111 1 11136667889999999987899999999999999972 23344 678999
Q ss_pred cCceEEEcc-CCcE-----EEEeccCCeEEEcCeeeChHHHHHHHhcCCCcceEEEcC
Q 012015 422 TGDLCYIDE-DGFL-----FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473 (473)
Q Consensus 422 TgD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vvg 473 (473)
|||+|++++ +|++ ++.||.||+||++|++|+|.+||++|.+||+|.+|+|++
T Consensus 308 TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~ 365 (437)
T 2y27_A 308 TRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIV 365 (437)
T ss_dssp EEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEE
T ss_pred cCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEE
Confidence 999999998 6986 899999999999999999999999999999999888763
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=100.00 E-value=4.9e-33 Score=267.01 Aligned_cols=239 Identities=18% Similarity=0.137 Sum_probs=183.0
Q ss_pred cCCCCEEEEEccCCCCCCcchhhhcHHHHHHHHHHhhccC--CCCCCCcEEEEecCh-hhHHhHHHHHHHhhhcCeEEEe
Q 012015 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVVM 265 (473)
Q Consensus 189 ~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~--~~~~~~~~~l~~~pl-~~~~g~~~~l~~l~~G~~~v~~ 265 (473)
..++++++++|||||||.||+|.++|+++........... .+..+++++++.+|+ +|..++...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 4678889999999999999999999999998887543222 267889999999999 99999977777889999 6666
Q ss_pred cCCCHH-----------------------HHHHHHHHcccceEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHH
Q 012015 266 QRFDLK-----------------------MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKD 322 (473)
Q Consensus 266 ~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~ 322 (473)
..+++. .+++.|+++++|++.++|+++..|++.......+++++|.+++|||+++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~ 246 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLD 246 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHH
Confidence 677777 888899999999999999999999887432233467899999999999999
Q ss_pred HHHHHH-HhCCCCeEEeecCCcccccccccccCCCCCCCCCCcccc------CCCcEEEEEcCCCCCCCCCCCccEEEEe
Q 012015 323 TIMAFA-SKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL------SAGLEAKIVDPETGDSLPPGKEGELSIR 395 (473)
Q Consensus 323 ~~~~~~-~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p------~~~~~~~i~d~~~~~~~~~g~~Gel~v~ 395 (473)
+.+++. +.||++++++.||+||+++++.... ..++|+| .++++++|+|+++++++++|+.|||+|+
T Consensus 247 ~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~-------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt 319 (369)
T 3hgu_A 247 EIKFIASEILPDCEFSASYGSTSALGVSRSLL-------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVT 319 (369)
T ss_dssp HHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC-------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEE
T ss_pred HHHHHHHHhCCCcEEEcccCchhhhcceeccc-------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEE
Confidence 999999 8998999999999999987653211 1158898 9999999999769999999999999998
Q ss_pred cCccccccCCCccccccccCCCCeeecCceEEEccC--C-------cEEEEeccCCeEEEcCe
Q 012015 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED--G-------FLFIVDRLKDLIKYKGY 449 (473)
Q Consensus 396 ~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~--g-------~l~~~GR~~d~i~~~G~ 449 (473)
+.. ++.+ -..|+|||++.+.+. | .+..++|.+++.++.|.
T Consensus 320 ~l~------------~~~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 320 HLS------------PWAF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEE------------TTEE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EcC------------cccc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 732 1111 124889999887543 2 45677888888888774
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=99.03 E-value=2.2e-09 Score=105.79 Aligned_cols=134 Identities=15% Similarity=0.170 Sum_probs=86.8
Q ss_pred CCC---ceEEEecCCCCCHHHHHHHHHhCCCCeEE-eecCCcccccccccccCCCCCCCCCCccc-cCCC-cEEEEEcCC
Q 012015 306 LSS---LETVACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAG-LEAKIVDPE 379 (473)
Q Consensus 306 l~~---lr~v~~~G~~l~~~~~~~~~~~~~~~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~d~~ 379 (473)
.++ +..++.||- ..-...++..+++.++. ..|++||+ .+.+. .. ..+ .+...+. ..++ +-.+.++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~-~~-p~~-~~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGIN-LD-PLC-KPEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEEC-SC-TTS-CGGGCCEEECTTSSEEEEEECS
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeec-cC-CCC-CcccCceeecCCcEEEEEEecc
Confidence 466 555566663 33334455555677887 89999995 33322 11 111 1111222 2232 344555422
Q ss_pred C--------CCCCCCCCccEEEEecCccccccCCCccccccccCCCCeeecCceEEEcc----CCcEEEEeccCCeEEEc
Q 012015 380 T--------GDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE----DGFLFIVDRLKDLIKYK 447 (473)
Q Consensus 380 ~--------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~----~g~l~~~GR~~d~i~~~ 447 (473)
. ...++.|+.+||+|+..+ |.+ -|++||+++... ..++.|+||.++++.+.
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~ 431 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSID 431 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSS
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEee
Confidence 2 135668999999998752 222 199999999875 35899999999999999
Q ss_pred CeeeChHHHHHHHhcC
Q 012015 448 GYQVAPAELEHLLLSH 463 (473)
Q Consensus 448 G~~v~~~~IE~~l~~~ 463 (473)
|+++...+||++|.+.
T Consensus 432 Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 432 SDKTNEEDLFKAVSQA 447 (581)
T ss_dssp SCCEEHHHHHHHHHHC
T ss_pred eeECCHHHHHHHHHHH
Confidence 9999999999999854
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.95 E-value=1.9e-09 Score=106.31 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=85.1
Q ss_pred CCCce---EEEecCCCCCHHHHHHHHHhCCCCeEE-eecCCcccccccccccCCCCCCCCCCcc-ccCCC-cEEEEEcCC
Q 012015 306 LSSLE---TVACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTG-RLSAG-LEAKIVDPE 379 (473)
Q Consensus 306 l~~lr---~v~~~G~~l~~~~~~~~~~~~~~~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G-~p~~~-~~~~i~d~~ 379 (473)
.++++ .++.||- ..-...++..+++.++. ..|++||+ .+.+.. . +.+ .+...+ ...|+ +-.+.++.+
T Consensus 301 WPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~-~-p~~-~p~~~~~~L~p~~~ffEFIP~~ 373 (609)
T 4b2g_A 301 WPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNL-N-PMS-KPSEVSYTIMPNMAYFEFLPHE 373 (609)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSC-EEEECS-C-TTS-CGGGCCEEECTTSCEEEEEEGG
T ss_pred CCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccce-eeeeec-C-CCC-CcccCceeecCCcEEEEEEecc
Confidence 56644 4555663 22234454444577777 89999995 333321 1 111 111111 12233 334455322
Q ss_pred C---------------CCCCCCCCccEEEEecCccccccCCCccccccccCCCCeeecCceEEEcc----CCcEEEEecc
Q 012015 380 T---------------GDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE----DGFLFIVDRL 440 (473)
Q Consensus 380 ~---------------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~----~g~l~~~GR~ 440 (473)
+ ...++.|+.+||+|+..+ |.+. |++||++++.. ...+.|+||.
T Consensus 374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~ 436 (609)
T 4b2g_A 374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFHNSAPQFHFVRRK 436 (609)
T ss_dssp GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEETTEEEEEEEEET
T ss_pred ccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecCCCCcEEEEEEec
Confidence 2 145778999999997642 3332 99999999863 4689999999
Q ss_pred CCeEEEcCeeeChHHHHHHHhc
Q 012015 441 KDLIKYKGYQVAPAELEHLLLS 462 (473)
Q Consensus 441 ~d~i~~~G~~v~~~~IE~~l~~ 462 (473)
++++.+.|+++.+.+||++|.+
T Consensus 437 ~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 437 NVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp TCCBCSSSCCBCHHHHHHHHHH
T ss_pred CCeEEccccCCCHHHHHHHHHH
Confidence 9999999999999999999873
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.78 E-value=1.9e-08 Score=98.91 Aligned_cols=134 Identities=15% Similarity=0.060 Sum_probs=83.7
Q ss_pred CCCceEE--EecCCCCCHHHHHHHHHhCCCCeEE-eecCCcccccccccccCCCCCCCCCCcc-ccCCCc-EEEEEcCCC
Q 012015 306 LSSLETV--ACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTG-RLSAGL-EAKIVDPET 380 (473)
Q Consensus 306 l~~lr~v--~~~G~~l~~~~~~~~~~~~~~~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G-~p~~~~-~~~i~d~~~ 380 (473)
.++++.| +.+|.. ..-...++..+++.++. ..|++||+ .+.+. .. ....++..+ ..+|+. -.+.++.+.
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~-~~--p~~~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAAN-VT--PRLSPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTE-EEEEC-CC--TTSCTTTCCEEECTTSCEEEEEEC--
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccce-eeeee-cC--CCCCccccceeecCCcEEEEEEeccc
Confidence 5667532 334422 22234455555677777 89999995 33332 11 111111122 233333 334443221
Q ss_pred ----------CCCCCCCCccEEEEecCccccccCCCccccccccCCCCeeecCceEEEccC----CcEEEEeccCCeEEE
Q 012015 381 ----------GDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED----GFLFIVDRLKDLIKY 446 (473)
Q Consensus 381 ----------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~----g~l~~~GR~~d~i~~ 446 (473)
...++.|+.+||+|+..+ |.+ -|++||+++...- ..+.|+||.++++.+
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~ 437 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSI 437 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence 146778999999998753 222 1999999998642 579999999999999
Q ss_pred cCeeeChHHHHHHHhc
Q 012015 447 KGYQVAPAELEHLLLS 462 (473)
Q Consensus 447 ~G~~v~~~~IE~~l~~ 462 (473)
.|+++...+||.++.+
T Consensus 438 ~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 438 NIDKNTERDLQLSVES 453 (581)
T ss_dssp SSCCBCHHHHHHHHHH
T ss_pred eeeECCHHHHHHHHHH
Confidence 9999999999999874
No 40
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=93.95 E-value=0.32 Score=46.63 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=76.8
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCC--cHHHHHHHHHHhCCeEecCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~ 126 (473)
++.+|++. +.|| ..+|.+.+...+..+++.+.. .++.++|++...++.+. ..+...++++..|+.+++++
T Consensus 89 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 89 QDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA-AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp GGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred hhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 56666543 2333 368999999888888888777 89999999998887643 23445688899999999876
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
. .+.+.+...+++.++.+++..+.....+.
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 197 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPSYMLSIA 197 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHHHHHHHH
Confidence 5 47888999999999999998887766543
No 41
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=93.11 E-value=0.59 Score=44.84 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=76.4
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCC--cHHHHHHHHHHhCCeEecCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~ 126 (473)
++.++++. +.|| ..+|.+.+...+..+++.+.. .|+.++|++...++-+. ..+...++++..|+.+++++
T Consensus 91 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 91 REQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA-AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp GGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred hhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 55555432 3344 368999999888888888877 89999999998887643 23455688899999999876
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccchHHHH
Q 012015 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (473)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (473)
+. +.+.+...+++.++.++...+.....+
T Consensus 170 ~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l 198 (443)
T 2y4o_A 170 GG-QTEKQVQLIRDFEPKIILVTPSYMLNL 198 (443)
T ss_dssp SC-CHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred CC-CHHHHHHHHHHhCCcEEEECHHHHHHH
Confidence 54 788899999999999999888766554
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.24 E-value=0.63 Score=44.56 Aligned_cols=99 Identities=20% Similarity=0.127 Sum_probs=77.0
Q ss_pred CCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCC--cHHHHHHHHHHhCCeEecCCC
Q 012015 57 DTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPANP 127 (473)
Q Consensus 57 ~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~ 127 (473)
+.+|++.. .|| ..+|.+.+...+..+++.+.. .++.++|++...++-+. ..+..+++++..|+.+++.++
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM-VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH-cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 66676542 233 368999999988888888877 89999999998887542 344567888999999998765
Q ss_pred CCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
.+++.+...+++.++.+++..+.....+.
T Consensus 165 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 193 (436)
T 3qov_A 165 -GNSKRQIKFISDFKTTALHAIPSYAIRLA 193 (436)
T ss_dssp -CCHHHHHHHHHHHTCCEEECCHHHHHHHH
T ss_pred -CCHHHHHHHHHHHCCCEEEECHHHHHHHH
Confidence 47788899999999999998887766553
No 43
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=87.00 E-value=2.1 Score=39.79 Aligned_cols=99 Identities=12% Similarity=0.009 Sum_probs=68.7
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCc--HHHHHHHHHHhCCeEecCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE--IPILYFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l~ 126 (473)
++.+|++. +.|| ..+|.+.+...+..++..+.. .|+.++|++..+++-+.. -+...++++..|+.+++.
T Consensus 90 ~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~- 167 (369)
T 3hgu_A 90 ADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH-RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI- 167 (369)
T ss_dssp TTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT-STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC-
T ss_pred ccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh-hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc-
Confidence 55655543 2333 468999999888877777776 899999999998876333 234445558889965554
Q ss_pred CCCCHH-----------------------HHHHHHhhcCCeEEEEccchHHHHh
Q 012015 127 PVNTES-----------------------EISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 127 ~~~~~~-----------------------~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
..++. .+...+++.++.+++..+.....+.
T Consensus 168 -~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 168 -DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp -CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred -cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 34444 6666888999999988887776554
No 44
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=84.33 E-value=4.9 Score=39.60 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=72.8
Q ss_pred CCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHH--HHHHHHHHhCCeEecCCC
Q 012015 57 DTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISPANP 127 (473)
Q Consensus 57 ~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~v~l~~ 127 (473)
+.+|++.. .|| ..+|.+.+...+......+.. .++.++|++...+|-...+- ..+++.+ .|+..+.++
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~- 268 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT- 268 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTS-CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhc-cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-
Confidence 77887653 233 469999998777666554433 67889999888877654432 3356777 999988775
Q ss_pred CCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
..+++.+...+++.++.+++..+.....+.
T Consensus 269 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 269 KFDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp CCCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 578899999999999999999888776654
No 45
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=80.37 E-value=15 Score=35.96 Aligned_cols=96 Identities=17% Similarity=0.107 Sum_probs=71.1
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHH---HHHHHHHhCCeEecC
Q 012015 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI---LYFSLLSLGVIISPA 125 (473)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~---~~lA~~~~G~~~v~l 125 (473)
++.+|++.. .|| ..+|.+.+...+...+.. +++.++|++...+|-...+-. .+++.+..|+..+..
T Consensus 190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~----~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI----CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH----TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred ccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH----hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 677887642 233 469999988777665543 577999999988876654433 378888999988876
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEccchHHHH
Q 012015 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (473)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (473)
+ ..++..+...+++.++.++...+.....+
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 295 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMW 295 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHHHHHH
Confidence 5 46788888999999999999887766544
No 46
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=80.28 E-value=13 Score=35.88 Aligned_cols=97 Identities=10% Similarity=0.023 Sum_probs=72.6
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012015 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (473)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 127 (473)
++.+|++.. .|| ..+|++.+...+..+.. . +++.++|++...+|-.... +..+++++..|+..+..+
T Consensus 162 ~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~-~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 162 LDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---S-LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp TTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---H-TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---h-hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 778887643 233 46899998877665543 2 6789999998888765432 334677888999988775
Q ss_pred CCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
..+++.+...+++.++.++...+.....+.
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 266 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLM 266 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHH
Confidence 578899999999999999999887776654
No 47
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=79.76 E-value=13 Score=36.42 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=71.3
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHH---HHHHHHHhCCeEecC
Q 012015 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI---LYFSLLSLGVIISPA 125 (473)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~---~~lA~~~~G~~~v~l 125 (473)
|+.+|++.. .|| ..+|.+.+...+..... . .++.++|++...+|-...+-. .+++.+..|+..+..
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~-~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---V-CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---H-HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred cCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---h-hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 677777642 233 46999988777655543 2 577899999888876654433 478889999998876
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEccchHHHH
Q 012015 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (473)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (473)
+ ..+++.+...+++.++.++...+.....+
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 286 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVW 286 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHH
Confidence 5 57888999999999999999888766554
No 48
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=78.95 E-value=16 Score=35.53 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=69.1
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHH--HHHHHHhCCeEecCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPIL--YFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~--~lA~~~~G~~~v~l~ 126 (473)
++.+|++. +.|| ..+|.+.+...+..++.. +++.++|++...+|-....-.. +++++ .|+..+..
T Consensus 169 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~- 242 (517)
T 3r44_A 169 GDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST----IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM- 242 (517)
T ss_dssp TTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH----SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-
T ss_pred CCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHh----cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-
Confidence 67777654 2333 469999988776665543 5778999999888776544333 45555 89888876
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
+..++..+...+++.++.++...+.....+.
T Consensus 243 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 273 (517)
T 3r44_A 243 PQFDATKVWSLIVEERVCIGGAVPAILNFMR 273 (517)
T ss_dssp SSCCHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHH
Confidence 4678999999999999999998887766554
No 49
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=78.36 E-value=9.7 Score=37.46 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012015 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (473)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 127 (473)
++.+|++.. .|| ..+|.+.+...+......+.. .++.++|++...+|-...+ +...++.+..|+..+.++
T Consensus 189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 266 (550)
T 3rix_A 189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFG-NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY- 266 (550)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTS-CCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhcc-ccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-
Confidence 456776542 233 468999888776665554444 5788999998888766433 345677888999988774
Q ss_pred CCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
..+++.+...+++.++.+++..+.....+.
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 296 (550)
T 3rix_A 267 RFEEELFLRSLQDYKIQSALLVPTLFSFFA 296 (550)
T ss_dssp SCCHHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCeEEEeCcHHHHHHH
Confidence 578899999999999999999887776554
No 50
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=74.32 E-value=11 Score=36.56 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=72.1
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 127 (473)
++.+|++. +.|| ..+|.+.+...+..++.. +++.++|++...+|-+... +..+++++..|+.++.++.
T Consensus 142 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 142 EHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICAD----FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp TTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHH----STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh----cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 56777654 3333 468999887766655433 6778999999988876544 3457888999999887764
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 128 V--NTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 128 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
. .++..+...+++.++.+++..+.....+.
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 249 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMCL 249 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 3 56788889999999999998887776553
No 51
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=74.27 E-value=17 Score=35.62 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=70.1
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHH-HHHHHHHhCCeEecCCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI-LYFSLLSLGVIISPANP 127 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~-~~lA~~~~G~~~v~l~~ 127 (473)
++.+|++. +.|| ..+|.+.+...+... .+....++.++|++...+|-....-. ..++++..|+..+..++
T Consensus 175 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~ 252 (541)
T 1v25_A 175 ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAA--SLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP 252 (541)
T ss_dssp TTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHT--TSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT
T ss_pred CCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhh--hhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCC
Confidence 56777543 3334 468998886544321 12222578899999888876543322 45778889999988877
Q ss_pred CCCHHHHHHHHhhcCCeEEEEccchHHHH
Q 012015 128 VNTESEISRQIQLSNPVIAFATSSVVHKL 156 (473)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (473)
..+++.+...+++.++.++...+.....+
T Consensus 253 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 281 (541)
T 1v25_A 253 RLDPASLVELFDGEGVTFTAGVPTVWLAL 281 (541)
T ss_dssp CCSHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred CCCHHHHHHHHHhcCeeEEecchHHHHHH
Confidence 78999999999999999999888766554
No 52
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=73.76 E-value=10 Score=36.85 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=71.3
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 127 (473)
++.+|++. +.|| ..+|++.+...+..... . .++.++|++...+|-+... +..+++.+..|+..+.+++
T Consensus 143 ~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~-~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 143 GDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE---D-FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp TTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH---H-TTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH---h-cCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 66777654 2233 46899988776655443 2 6779999999988766543 4457888999999988765
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 128 V--NTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 128 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
. .++..+...+++.++.++...+.....+.
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 250 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCL 250 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 3 56788889999999999998887776543
No 53
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=71.61 E-value=22 Score=35.03 Aligned_cols=98 Identities=14% Similarity=0.027 Sum_probs=69.5
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHH--HHHHHHHhCCeEecCC
Q 012015 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI--LYFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~--~~lA~~~~G~~~v~l~ 126 (473)
++.+|++.. .|| ..+|++ +...... ..... .++.++|++...++-+..+-. .+++.+..|+..+...
T Consensus 205 ~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~--~~~~~-~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~ 280 (570)
T 3c5e_A 205 SQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAK--MDAGW-TGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHL 280 (570)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHH--HHTTT-TSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEEC
T ss_pred CCCcEEEEECCCCCCCCCEEEechH-HHHhhhh--hhhhh-cCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEec
Confidence 677777642 233 368888 4432111 12233 788999999888877655433 4678888999888765
Q ss_pred C-CCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 127 P-VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 127 ~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
. ..++..+...+++.++.+++..+.....+.
T Consensus 281 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 312 (570)
T 3c5e_A 281 LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLL 312 (570)
T ss_dssp CSSCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCeEEeccHHHHHHHH
Confidence 4 678999999999999999999888777664
No 54
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=69.92 E-value=9.8 Score=37.27 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=73.6
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcH--HHHHHHHHHhCCeEecCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI--PILYFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~ 126 (473)
|+.+|++. +.|| ..+|.+.+...+..........+++.++|++...+|-...+ ...+++.+..|+..+.++
T Consensus 177 ~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~ 256 (536)
T 3ni2_A 177 PDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP 256 (536)
T ss_dssp TTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS
T ss_pred ccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC
Confidence 67777643 3344 46999998877665544443335788999998888765433 244678889999888764
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
..+...+...+++.++.++...+.....+.
T Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 286 (536)
T 3ni2_A 257 -KFEIGSLLGLIEKYKVSIAPVVPPVMMSIA 286 (536)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCeEEEccHHHHHHHH
Confidence 578889999999999999998887776554
No 55
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=69.39 E-value=38 Score=33.72 Aligned_cols=96 Identities=9% Similarity=0.073 Sum_probs=70.3
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHH---HHHHHHHhCCeEecC
Q 012015 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI---LYFSLLSLGVIISPA 125 (473)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~---~~lA~~~~G~~~v~l 125 (473)
++.+|++.. .|| ..+|.+.+...+...... .++.++|++...++-...+-. .+++++..|+..+..
T Consensus 183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~----~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI----CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH----HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh----cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 677877542 333 469999887776655443 567899999988885554433 478888999988876
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEccchHHHH
Q 012015 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (473)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (473)
+ ..+...+...+++.++.++...+.....+
T Consensus 259 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 288 (617)
T 3rg2_A 259 A-DPSATLCFPLIEKHQVNVTALVPPAVSLW 288 (617)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred C-CCCHHHHHHHHHHhCCcEEEcchHHHHHH
Confidence 5 46778888899999999999887765544
No 56
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=69.07 E-value=14 Score=36.57 Aligned_cols=97 Identities=10% Similarity=0.103 Sum_probs=70.8
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHH--HHHHHHHhCCeEecCC
Q 012015 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI--LYFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~--~~lA~~~~G~~~v~l~ 126 (473)
++.+|++.. .|| ..+|.+.+...+..+... +++.++|++...+|-...+-. .+++.+..|+..+.++
T Consensus 166 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 166 SNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS----FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp TTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHH----TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHh----hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 677877642 233 469999998877665543 577899999998887765433 3788899999988876
Q ss_pred CCC---CHHHHHHHHhhcCCeEEEEccchHHHH
Q 012015 127 PVN---TESEISRQIQLSNPVIAFATSSVVHKL 156 (473)
Q Consensus 127 ~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (473)
+.. ++..+...+++.++.++...+.....+
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 274 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYC 274 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHH
Confidence 532 567788888999999888776655443
No 57
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=68.78 E-value=22 Score=34.37 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=69.7
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCC--CCCCEEEEEeCCCCcHH--HHHHHHHHhCCeEec
Q 012015 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRL--SKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISP 124 (473)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~--~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~v~ 124 (473)
|+.+|++.. .|| ..+|.+.+...+..++. . .++ .++|++...+|-...+- ..+++.+..|+.++.
T Consensus 152 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~ 227 (504)
T 1t5h_X 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---Q-VGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV 227 (504)
T ss_dssp TTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---T-TCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred CCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---h-hCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence 677877642 233 36899888776665543 2 566 78888888877655442 346888999999887
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 125 ANPVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 125 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
.+ ..++..+...+++.++.+++..+.....+.
T Consensus 228 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 259 (504)
T 1t5h_X 228 VE-EFRPVDALQLVQQEQVTSLFATPTHLDALA 259 (504)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHH
Confidence 75 477888899999999999998887766553
No 58
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=68.58 E-value=27 Score=34.00 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=69.7
Q ss_pred CCCcEEEEC---CCC----ceecHHHH-HHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHH--HHHHHHHHhCCeEecC
Q 012015 56 DDTVALINS---VTG----LRVSFSEF-TRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISPA 125 (473)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el-~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~v~l 125 (473)
++.+|++.. .|| ..+|++.+ .... .......++.++|++...+|-...+- ..++..+..|+..+.+
T Consensus 182 ~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~----~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 257 (529)
T 2v7b_A 182 CDDIAFWLYSSGSTGKPKGTVHTHANLYWTAE----LYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILM 257 (529)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHH----HTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECC
T ss_pred CCCeEEEEECCCCCCCCceEEEEhhHHHHHHH----HHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEe
Confidence 677877542 233 46899887 3322 22223367889999988887766543 3456788899999988
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
++..+++.+...+++.++.+++..+.....+.
T Consensus 258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 289 (529)
T 2v7b_A 258 AERPTADAIFARLVEHRPTVFYGVPTLYANML 289 (529)
T ss_dssp CSCCCHHHHHHHHHHSCCSEEEECHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 77788999999999999999998887766553
No 59
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=67.07 E-value=29 Score=34.68 Aligned_cols=96 Identities=19% Similarity=0.129 Sum_probs=70.3
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHH-HHHHHHHHhCCeEecCC-
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP-ILYFSLLSLGVIISPAN- 126 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~v~l~- 126 (473)
|+.+|++. +.|| ..+|.+.+...+. .... .++.++|++...++-+.+.- ..+++.+..|+..+..+
T Consensus 163 ~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~----~~~~-~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 163 ADQIAYINFSSGTTGRPKAIACTHAGITRLCL----GQSF-LAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp TTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS----SCGG-GTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCeEEEEECCCccccCeEEEEchHHHHHHHH----HHHh-hCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 67777653 3444 4689988755432 2233 68899999999888766543 44688889999887763
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccchHHHH
Q 012015 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (473)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (473)
...++..+...+++.++.++...+.....+
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l 267 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTL 267 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHH
Confidence 357889999999999999999887766655
No 60
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=66.57 E-value=22 Score=34.98 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=70.7
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCC-cHHHHHHHHHHhCCeEecCCC
Q 012015 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI-EIPILYFSLLSLGVIISPANP 127 (473)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~v~l~~ 127 (473)
|+.+|++.. .|| ..+|.+.+..... .... .++.++|++...+|-+. -....+++.+..|+..+..+.
T Consensus 213 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~----~~~~-~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 213 PEDVACVMFTSGSTGRPKGVMSPHRALTGTYL----GQDY-AGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp TTSEEEEECCSSCCSSCCCEEEEHHHHHHHHS----SCCS-SCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCeEEEEECCcCCCCCeEEEEecHHHHHHHH----hhhh-cCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 778887653 222 4689988754332 1233 68889999998888754 345567888899998887654
Q ss_pred -CCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 128 -VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 128 -~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
..++..+...+++.++.++...+.....+.
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 318 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFLV 318 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 568889999999999999998887766554
No 61
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=61.89 E-value=46 Score=32.17 Aligned_cols=100 Identities=16% Similarity=0.098 Sum_probs=70.6
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012015 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (473)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 127 (473)
++.+|++.. .|| ..+|.+.+...+..+.... . .++.+++++....+-+... +..+++++..|+..+.++.
T Consensus 144 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 144 GDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA-A-FDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPK 221 (521)
T ss_dssp TTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT-T-TCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCG
T ss_pred CCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc-c-cCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCH
Confidence 677777643 222 4689999987666554432 2 5778888888877766544 4556788889998887765
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 128 V--NTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 128 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
. .+...+...+.+.++.++...+.....+.
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 253 (521)
T 3l8c_A 222 ELVADFKQLFTTIAQLPVGIWTSTPSFADMAM 253 (521)
T ss_dssp GGTTCHHHHHHHHHHSCCSEEEECHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHh
Confidence 4 37788889999999999998887765543
No 62
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=61.51 E-value=53 Score=31.64 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=67.9
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcH--HHHHHHHHHhCCeEecCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI--PILYFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~ 126 (473)
++.+|++. +.|| ..+|.+.+...+..+... +++.++|++...++-.... +..+++.+..|+.++...
T Consensus 154 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 154 DGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADA----WQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHH----HTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHH----hCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 66777654 3333 469999998877766544 4678899988877754432 334788899999988774
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
..+.+.+...+ +.++.+++..+.....+.
T Consensus 230 -~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~ 258 (505)
T 3nyq_A 230 -RFSTEGAAREL-NDGATMLFGVPTMYHRIA 258 (505)
T ss_dssp -SCCHHHHHHHH-TTTCCEEEECHHHHHHHH
T ss_pred -CCChHHHHHHH-hhCCeEEEehHHHHHHHH
Confidence 56777777777 678888888777665543
No 63
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=60.98 E-value=26 Score=37.32 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=72.6
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcH--HHHHHHHHHhCCeEecCC
Q 012015 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI--PILYFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~ 126 (473)
|+.+|++.. .|| ..+|.+.+...+..........+++.++|++...+|-...+ ...+++.+..|+..+..+
T Consensus 224 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~ 303 (979)
T 3tsy_A 224 PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP 303 (979)
T ss_dssp TTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS
T ss_pred ccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC
Confidence 788887643 233 46999998877665544433335788999998888765432 344678889999988764
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccchHHHH
Q 012015 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (473)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (473)
..+.+.+...+++.++.++...+.....+
T Consensus 304 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 332 (979)
T 3tsy_A 304 -KFEINLLLELIQRCKVTVAPMVPPIVLAI 332 (979)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCeEEEcHHHHHHHH
Confidence 57788999999999999998887766554
No 64
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=59.67 E-value=30 Score=33.84 Aligned_cols=96 Identities=19% Similarity=0.151 Sum_probs=71.7
Q ss_pred CCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcH-HHHHHHHHHhCCeEecCCCC
Q 012015 57 DTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANPV 128 (473)
Q Consensus 57 ~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~ 128 (473)
+.+|++. +.|| ..+|.+.+...+..++.. .++.++|++...+|-...+ +..++.++..|+..+.++ .
T Consensus 180 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~ 254 (549)
T 3g7s_A 180 EDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVA----TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-M 254 (549)
T ss_dssp TSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHH----HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-S
T ss_pred CCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHH----cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-C
Confidence 6677643 3344 469999998877766543 5778999998888765543 233677788899888775 6
Q ss_pred CCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 129 NTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 129 ~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
.+++.+...+++.++.+++..+.....+.
T Consensus 255 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 283 (549)
T 3g7s_A 255 FNQEMLAENIEKYKGTFSWAVPPALNVLV 283 (549)
T ss_dssp CCHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCeEEEeCCHHHHHHH
Confidence 78899999999999999999887766553
No 65
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=59.23 E-value=20 Score=34.30 Aligned_cols=93 Identities=13% Similarity=0.015 Sum_probs=64.8
Q ss_pred CCCcEEEEC---CC----CceecHHHHHHHHHHHHHHhHHhcCCCC------CCEEEEEeCCCCcH--HHHHHHHHHhCC
Q 012015 56 DDTVALINS---VT----GLRVSFSEFTRRTNSLASYLQNVTRLSK------NDTAFVLSTNSIEI--PILYFSLLSLGV 120 (473)
Q Consensus 56 p~~~a~~~~---~~----~~~~Ty~el~~~~~~la~~L~~~~g~~~------gd~V~i~~~~~~~~--~~~~lA~~~~G~ 120 (473)
++.+|++.. .| +..+|++.+...+..+...+ ++.+ +|++...+|-...+ ...+++.+..|+
T Consensus 182 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~----~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~ 257 (480)
T 3t5a_A 182 YPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY----FADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGY 257 (480)
T ss_dssp CCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH----CTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTC
T ss_pred CCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh----ccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCC
Confidence 677887653 22 25799999988877766554 3344 88888887766543 456789999999
Q ss_pred eEecCCCC---CCHHHHHHHHhhcCCeEEEEccchH
Q 012015 121 IISPANPV---NTESEISRQIQLSNPVIAFATSSVV 153 (473)
Q Consensus 121 ~~v~l~~~---~~~~~l~~~l~~~~~~~ii~~~~~~ 153 (473)
..+..++. .++..+...+++.++. +...+...
T Consensus 258 ~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~ 292 (480)
T 3t5a_A 258 PAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFA 292 (480)
T ss_dssp CEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHH
T ss_pred ceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHH
Confidence 98887654 3677888888888888 44444433
No 66
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=58.57 E-value=62 Score=31.13 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=65.6
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHH--HHHHHHHHhCCeEecCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~v~l~ 126 (473)
++.+|++. +.|| ..+|.+.+...+..+... +++.++|++...+|-...+- ..+.+++..|+.+++.
T Consensus 159 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~- 233 (509)
T 3ivr_A 159 AADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDA----WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA- 233 (509)
T ss_dssp TTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHH----TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred ccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHh----hCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-
Confidence 66776653 3444 469999988776665543 57799999998887655432 2233344455555443
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
..++..+...+++.++.++...+.....+.
T Consensus 234 -~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 263 (509)
T 3ivr_A 234 -KFDPAQAARDIEAHKVTVMAEFAPMLGNIL 263 (509)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEEETTHHHHHH
T ss_pred -ccCHHHHHHHHHHHCCcEEEecHHHHHHHH
Confidence 778999999999999999998877766554
No 67
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=57.12 E-value=39 Score=33.23 Aligned_cols=97 Identities=13% Similarity=0.085 Sum_probs=66.9
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 127 (473)
++.+|++. +.|| ..+|.+.+...+..++ ..+++.++|++...++-+... +..++..+..|+..+.++.
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~----~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 256 (563)
T 1amu_A 181 STDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFE----NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILK 256 (563)
T ss_dssp TTSEEEEEEEC-----CEEEEEESHHHHHHHHHHH----HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCH
T ss_pred CCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHH----HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcCh
Confidence 66777654 2333 4689988865554333 336889999999888766543 3346778889998887754
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEccchHHHH
Q 012015 128 V--NTESEISRQIQLSNPVIAFATSSVVHKL 156 (473)
Q Consensus 128 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (473)
. .++..+...+++.++.++...+.....+
T Consensus 257 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 287 (563)
T 1amu_A 257 DTINDFVKFEQYINQKEITVITLPPTYVVHL 287 (563)
T ss_dssp HHHTCHHHHHHHHHHTTCCEEEECHHHHTTS
T ss_pred HhhcCHHHHHHHHHHcCCcEEEeCHHHHHHH
Confidence 3 5778888999999999998877655443
No 68
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=56.89 E-value=27 Score=32.04 Aligned_cols=95 Identities=8% Similarity=0.093 Sum_probs=63.0
Q ss_pred CCCcEEE---ECCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012015 56 DDTVALI---NSVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (473)
Q Consensus 56 p~~~a~~---~~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 127 (473)
.|.+|++ .+.|| ..+|++.+...+..++.. +++.++|++...+|-.... +..++..+.+|+..+..++
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~----~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~ 111 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKA----LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP 111 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHH----TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHH----hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc
Confidence 3455554 34455 469999988776655433 6789999999888765432 3445666777887777766
Q ss_pred CCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
.... ...+++.++.++...+.....+.
T Consensus 112 ~~~~---~~~i~~~~~t~~~~~P~~l~~ll 138 (358)
T 4gs5_A 112 TANP---LAGLDHADFDFVAMVPMQLQSIL 138 (358)
T ss_dssp CSCT---TTTCSSCCCSEEEECHHHHHHHH
T ss_pred cccH---HHHHHHhCCeEEEcChHHHHHhh
Confidence 5432 34577788888888776665543
No 69
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=55.20 E-value=36 Score=30.86 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=46.7
Q ss_pred cC-CCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccc
Q 012015 90 TR-LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS 151 (473)
Q Consensus 90 ~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 151 (473)
.| +++|+.|.+....+..-..+.+++.+.|..++.+-|...+......++..++++++++..
T Consensus 65 ~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 65 EGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred cCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 35 488888766667788888888999999987665545444455567788999999999754
No 70
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=51.12 E-value=34 Score=33.84 Aligned_cols=98 Identities=5% Similarity=0.026 Sum_probs=68.6
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHH--HHHHHHHhCCeEecCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI--LYFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~--~~lA~~~~G~~~v~l~ 126 (473)
++.+|++. +.|| ..+|...+...... .. ...++.+++++....+.+...-. .+++.+..|+.++..+
T Consensus 224 ~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 299 (580)
T 3etc_A 224 NEDICLVYFSSGTAGFPKMVEHDNTYPLGHILT---AK-YWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYD 299 (580)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEETTHHHHHHHH---HH-TTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCCccEEEeccHHHHHHHHH---HH-HhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEec
Confidence 67777654 3333 34666544433222 12 22578899998888877665443 4688999999988775
Q ss_pred -CCCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 127 -PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 127 -~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
...+++.+...+++.++.++...+.....+.
T Consensus 300 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 331 (580)
T 3etc_A 300 YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLI 331 (580)
T ss_dssp CSSCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCeEEEccHHHHHHHH
Confidence 5778899999999999999998887776654
No 71
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=50.92 E-value=38 Score=33.19 Aligned_cols=98 Identities=7% Similarity=0.043 Sum_probs=69.8
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcH--HHHHHHHHHhCCeEecCC
Q 012015 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI--PILYFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~ 126 (473)
|+.+|++.. .|| ..+|.+.+...+..+... . .++.++|++...+|-...+ ...+++.+..|+..+.+.
T Consensus 175 ~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 251 (576)
T 3gqw_A 175 PNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD--G-IKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLR 251 (576)
T ss_dssp TTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT--T-SCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECC
T ss_pred CCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc--c-cCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcc
Confidence 678887753 223 468999987766555432 2 5789999999888776543 345677888898887765
Q ss_pred C---CCCHHHHHHHHhhcCCeEEEEccchHHHH
Q 012015 127 P---VNTESEISRQIQLSNPVIAFATSSVVHKL 156 (473)
Q Consensus 127 ~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (473)
+ ..++..+...+++.++.+++..+.....+
T Consensus 252 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 284 (576)
T 3gqw_A 252 TQDFAMRPLQWLKLISKNRGTVSVAPPFGYELC 284 (576)
T ss_dssp HHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred hhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHH
Confidence 4 23566788889999999998887665443
No 72
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=50.32 E-value=90 Score=26.09 Aligned_cols=91 Identities=12% Similarity=0.073 Sum_probs=51.4
Q ss_pred CcEEEEecC-hhhHHhH-HHHHHHhhhcCeEEEe-cCCCHHHHHHHHHHcccceEEe------cHHH--HHHHhcCCCCC
Q 012015 234 PAVMLFTMP-YFHIYGL-FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAV------TPPI--VVAMSKGGSTD 302 (473)
Q Consensus 234 ~~~~l~~~p-l~~~~g~-~~~l~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~------~P~~--~~~l~~~~~~~ 302 (473)
..+++.+.+ =.|..|. +....--..|-.++.. ....++.+.+.+.+++++.+.. ++++ +..+.+..++.
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 334444433 2466676 3334444466666655 4568899999999999997776 2222 22222222111
Q ss_pred CCCCCCceEEEecCCCCCHHHHHH
Q 012015 303 GYDLSSLETVACGAAPLGKDTIMA 326 (473)
Q Consensus 303 ~~~l~~lr~v~~~G~~l~~~~~~~ 326 (473)
... ..+ .+++||.+++++..++
T Consensus 173 ~~~-~~v-~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 173 KLR-DSV-KCMFGGAPVSDKWIEE 194 (215)
T ss_dssp TCG-GGS-EEEEESSSCCHHHHHH
T ss_pred CCC-CCC-EEEEECCCCCHHHHHH
Confidence 110 123 3788999999876544
No 73
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=50.25 E-value=49 Score=30.14 Aligned_cols=92 Identities=11% Similarity=0.046 Sum_probs=60.6
Q ss_pred CcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHH
Q 012015 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQ 137 (473)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 137 (473)
++.+-....+.+=+|++= -..+.+.....+ .-+++|.+..+....+-.-+.+-++|.++|..+..+=|...+......
T Consensus 51 ~IylK~E~lnptGSfK~R-gA~~~i~~a~~~-g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~ 128 (344)
T 3vc3_A 51 YVAVKQEMMQPTASIADR-PAYAMITDAEEK-NLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVT 128 (344)
T ss_dssp EEEEEEGGGSTTSBTTHH-HHHHHHHHHHHT-TCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHH
T ss_pred EEEEEecCCCCCCCcHHH-HHHHHHHHHHHc-CCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHH
Confidence 444444322334444432 122334444433 346788777778888899999999999999977666566656666778
Q ss_pred HhhcCCeEEEEccc
Q 012015 138 IQLSNPVIAFATSS 151 (473)
Q Consensus 138 l~~~~~~~ii~~~~ 151 (473)
++..++++++++..
T Consensus 129 ~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 129 MRAFGAELILTDPA 142 (344)
T ss_dssp HHHTTCEEEEECGG
T ss_pred HHHcCCEEEEECCC
Confidence 89999999998753
No 74
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=48.10 E-value=51 Score=31.74 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=66.2
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCC--cHHHHHHHHHHhCCeEecCC
Q 012015 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~ 126 (473)
++.+|++.. .|| ..+|.+.+...+..+... +++.++|++...+|-.. .+....+..+..|+..+.++
T Consensus 154 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 229 (503)
T 4fuq_A 154 ADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDY----WRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP 229 (503)
T ss_dssp TTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHH----TTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS
T ss_pred CCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHH----hCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC
Confidence 677877642 233 469999988776665543 57789999988876533 23445667778888887665
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
..+++.+...++ ++.++...+.....+.
T Consensus 230 -~~~~~~~~~~i~--~~t~~~~~P~~~~~l~ 257 (503)
T 4fuq_A 230 -KFDPDKILDLMA--RATVLMGVPTFYTRLL 257 (503)
T ss_dssp -SCCHHHHHHHHT--TCCEEEECHHHHHHHH
T ss_pred -CCCHHHHHHHHh--hcCEEEEHHHHHHHHH
Confidence 677888888777 7888887777665553
No 75
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=45.66 E-value=48 Score=33.27 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=69.6
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHH--HHHHHHHHhCCeEecCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~v~l~ 126 (473)
++.+|++- +.|| ..+|.+.+...+.. .+...+++.++|++....+-+...- ..+++.+..|+..+..+
T Consensus 255 ~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~ 331 (652)
T 1pg4_A 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT---TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 331 (652)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEESHHHHHHHHH---HHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEEC
T ss_pred CCCCEEEEeccCCCCCCceEEECchHHHHHHHH---HHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEEC
Confidence 56777653 3334 35888877554322 2222367899999988877665543 34678999999998876
Q ss_pred CC---CCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 127 PV---NTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 127 ~~---~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
.. .++..+..++++.++.++.+.+.....+.
T Consensus 332 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 365 (652)
T 1pg4_A 332 GVPNWPTPARMCQVVDKHQVNILYTAPTAIRALM 365 (652)
T ss_dssp SCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHH
Confidence 42 46788999999999999999887776554
No 76
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=44.20 E-value=67 Score=35.44 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=70.1
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHH-HHHHHHHhCCeEecCCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI-LYFSLLSLGVIISPANP 127 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~-~~lA~~~~G~~~v~l~~ 127 (473)
|+.+|++- +.|| ..+|.+.+... ...... +++.++|++....+-+.+..+ -+++.+..|+..+..++
T Consensus 606 ~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~----~~~~~~-~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 606 PNDPAYIMYTSGTTGKPKGNITTHANIQGL----VKHVDY-MAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEEHHHHHHH----HSSCCS-SCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred CCCeEEEEeCCCCCCCCCEEEEehHHHHHH----HHHHHh-cCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence 77787754 3344 46899888643 222233 788999999888877766543 47888899998887765
Q ss_pred --CCCHHHHHHHHhhcCCeEEEEccchHHHH
Q 012015 128 --VNTESEISRQIQLSNPVIAFATSSVVHKL 156 (473)
Q Consensus 128 --~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (473)
..++..+...+++.++.++...+.....+
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l 711 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLL 711 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHH
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHH
Confidence 36788999999999999998877666544
No 77
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=43.68 E-value=65 Score=31.50 Aligned_cols=89 Identities=12% Similarity=0.160 Sum_probs=64.4
Q ss_pred ceecHHHHHHHHHHHHHHhHH----hcCCCCCCEEEEEeCCCCcH-HHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcC
Q 012015 68 LRVSFSEFTRRTNSLASYLQN----VTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANPVNTESEISRQIQLSN 142 (473)
Q Consensus 68 ~~~Ty~el~~~~~~la~~L~~----~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 142 (473)
..+|.+.+...+..++..+.. ...+...+++....+..... +..++..+..|+..+........+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 469999998888887776541 14567788888777766554 3346778889998886654444566778889999
Q ss_pred CeEEEEccchHHHH
Q 012015 143 PVIAFATSSVVHKL 156 (473)
Q Consensus 143 ~~~ii~~~~~~~~~ 156 (473)
+.++...+..+..+
T Consensus 273 ~t~~~~~P~~l~~~ 286 (562)
T 3ite_A 273 VTHAGIVPSLLDQT 286 (562)
T ss_dssp CCEEEECHHHHHHH
T ss_pred CCEEEcCHHHHhhc
Confidence 99999887766544
No 78
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=38.08 E-value=82 Score=31.67 Aligned_cols=99 Identities=10% Similarity=0.045 Sum_probs=68.3
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHH--HHHHHHHHhCCeEecCC
Q 012015 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISPAN 126 (473)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~v~l~ 126 (473)
++.+|++- +.|| ..+|.+.+...+... +...+++.++|++....+-+...- ..+++.+..|+..+..+
T Consensus 261 ~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~ 337 (663)
T 1ry2_A 261 SEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLT---MRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFE 337 (663)
T ss_dssp TTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHH---HHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEEC
T ss_pred CCCceEEEeccCCCCCCceEEEchhHHHHHHHHH---HHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEEC
Confidence 55666543 3344 357877765443322 222368899999888777665432 34578899999888776
Q ss_pred CC---CCHHHHHHHHhhcCCeEEEEccchHHHHh
Q 012015 127 PV---NTESEISRQIQLSNPVIAFATSSVVHKLA 157 (473)
Q Consensus 127 ~~---~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (473)
.. .++..+..++++.++.++.+.+.....+.
T Consensus 338 ~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~ 371 (663)
T 1ry2_A 338 GTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLK 371 (663)
T ss_dssp SCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 42 46788999999999999999888777664
No 79
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=32.40 E-value=98 Score=28.36 Aligned_cols=61 Identities=11% Similarity=-0.012 Sum_probs=39.2
Q ss_pred HHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCC-----CCCHHHHHHHHhhcC--CeEEEE
Q 012015 84 SYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP-----VNTESEISRQIQLSN--PVIAFA 148 (473)
Q Consensus 84 ~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~--~~~ii~ 148 (473)
..|.. +++++||.|.+-.+.-.. ..-++...|+.++.++. ..+.+.++..+..-+ .++|+.
T Consensus 68 ~al~~-l~~~~Gd~Vi~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 68 AAIQL-KKRKKGKYALMPSFTFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHH-HSCTTCCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHH-cCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 33445 578999998876544333 34556788987766543 347888888774334 666664
No 80
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=32.36 E-value=1.2e+02 Score=20.55 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=31.5
Q ss_pred CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEe
Q 012015 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLS 102 (473)
Q Consensus 67 ~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~ 102 (473)
++.+|.+++...+.+--+.|.++.|+.+.-.++-++
T Consensus 61 drkmtraefsaiasrsirelkerfgfdkdvpigavl 96 (115)
T 4hlb_A 61 DRKMTRAEFSAIASRSIRELKERFGFDKDVPIGAVL 96 (115)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCCcCCccceeE
Confidence 789999999999999999999989998887777554
No 81
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=30.38 E-value=1.8e+02 Score=25.76 Aligned_cols=59 Identities=8% Similarity=0.002 Sum_probs=41.3
Q ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccc
Q 012015 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS 151 (473)
Q Consensus 92 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 151 (473)
+++|+.|.. ...+-.-..+.+++.+.|..++.+-|...+......++..++++++++..
T Consensus 64 ~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 64 IKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp CCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 366776655 66677777777888899986665544433444556678899999998763
No 82
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=29.83 E-value=1.3e+02 Score=27.32 Aligned_cols=80 Identities=9% Similarity=0.140 Sum_probs=47.8
Q ss_pred eecHHHHHHHH--HHHH-HHhHHhcCCCCCCEEEEEeC-CCCcHHHHHHHHHHhCCeE-ecCCCCCCHHHHHHHHhhcCC
Q 012015 69 RVSFSEFTRRT--NSLA-SYLQNVTRLSKNDTAFVLST-NSIEIPILYFSLLSLGVII-SPANPVNTESEISRQIQLSNP 143 (473)
Q Consensus 69 ~~Ty~el~~~~--~~la-~~L~~~~g~~~gd~V~i~~~-~~~~~~~~~lA~~~~G~~~-v~l~~~~~~~~l~~~l~~~~~ 143 (473)
.+++.+..... -..| ..|.+..++++|++|+|... -++-..++.+|- ..|+.. +..+..-..++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 35666644321 1122 23434358999999999987 456666666665 468844 444444444445556677888
Q ss_pred eEEEEc
Q 012015 144 VIAFAT 149 (473)
Q Consensus 144 ~~ii~~ 149 (473)
+.++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 877753
No 83
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=28.86 E-value=62 Score=19.94 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=16.1
Q ss_pred HhHHhcCCCCCCEEEEEeCCC
Q 012015 85 YLQNVTRLSKNDTAFVLSTNS 105 (473)
Q Consensus 85 ~L~~~~g~~~gd~V~i~~~~~ 105 (473)
.+++++|+++||.|.+...++
T Consensus 19 ~ir~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 19 KVRQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHHHSCCCTTCEEEEEECSS
T ss_pred HHHHHcCcCCCCEEEEEEECC
Confidence 455559999999999887553
No 84
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=28.65 E-value=1.7e+02 Score=26.28 Aligned_cols=76 Identities=5% Similarity=0.055 Sum_probs=46.9
Q ss_pred eecHHHHHHHHHH--HH-HHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeE
Q 012015 69 RVSFSEFTRRTNS--LA-SYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI 145 (473)
Q Consensus 69 ~~Ty~el~~~~~~--la-~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 145 (473)
.+++.+....... .| ..|+. .++++|++|+|...-+.-..+++++....|+.++-++. ++++ ..+++..++..
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~ 211 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKV-SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADV 211 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCCHHHHhhcccceeeEEeeecc-cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeE
Confidence 4566654333222 22 23444 78999999999987666667777666666776665543 3333 34566677777
Q ss_pred EEE
Q 012015 146 AFA 148 (473)
Q Consensus 146 ii~ 148 (473)
++.
T Consensus 212 ~i~ 214 (348)
T 4eez_A 212 TIN 214 (348)
T ss_dssp EEE
T ss_pred EEe
Confidence 664
No 85
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=26.71 E-value=1.9e+02 Score=27.16 Aligned_cols=61 Identities=15% Similarity=0.070 Sum_probs=45.7
Q ss_pred cC-CCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcc
Q 012015 90 TR-LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS 150 (473)
Q Consensus 90 ~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 150 (473)
.| +++|....+....+..-...-+++.+.|..++.+-|...+......++..++++++++.
T Consensus 168 ~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 168 KGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred cCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 45 46775555666678888888899999999776655555555666778899999999974
No 86
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=26.60 E-value=60 Score=20.69 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=16.0
Q ss_pred HhHHhcCCCCCCEEEEEeCCC
Q 012015 85 YLQNVTRLSKNDTAFVLSTNS 105 (473)
Q Consensus 85 ~L~~~~g~~~gd~V~i~~~~~ 105 (473)
.+++++|+++||.|.+...++
T Consensus 29 eiR~~Lgi~~Gd~l~i~~~~~ 49 (59)
T 1yfb_A 29 ELRRTLGIAEKDALEIYVDDE 49 (59)
T ss_dssp HHHHHTTCCTTCEEEEEEETT
T ss_pred HHHHHcCCCCCCEEEEEEECC
Confidence 455568999999998877543
No 87
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=26.45 E-value=1.9e+02 Score=25.55 Aligned_cols=59 Identities=14% Similarity=0.025 Sum_probs=40.7
Q ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccc
Q 012015 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS 151 (473)
Q Consensus 92 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 151 (473)
+++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+......++..++++++++..
T Consensus 62 ~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 62 LKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp CCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 356666654 56677777777888889986665444333344555678899999998764
No 88
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=26.17 E-value=2.3e+02 Score=25.77 Aligned_cols=57 Identities=12% Similarity=-0.014 Sum_probs=37.2
Q ss_pred cCCCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCC----CCHHHHHHHHhhc--CCeEEEEc
Q 012015 90 TRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV----NTESEISRQIQLS--NPVIAFAT 149 (473)
Q Consensus 90 ~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~ii~~ 149 (473)
+++++||.|.+..+.-.... .++...|+.++.++.+ .+.+.+...++.. ++++|+..
T Consensus 67 l~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 67 AGVKQDDIVLASSFTFIASV---APICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp TTCCTTCEEEEESSSCGGGT---HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred cCCCCCCEEEECCCccHHHH---HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 45688999888776555443 3445578877665532 4678888888764 56666653
No 89
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=26.01 E-value=1.2e+02 Score=20.41 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=31.4
Q ss_pred ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHhCC
Q 012015 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120 (473)
Q Consensus 68 ~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 120 (473)
..+.+.+|.+ .+.+ ++..+++.|.++|..+.....+...+...|.
T Consensus 22 ~~ip~~~l~~-------~~~~-l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 22 INIPLKEVKE-------RIAT-AVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp EECCHHHHHH-------HHHH-HCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EEcCHHHHHH-------HHHH-hCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 4566666643 3444 5667788999999888777777677777775
No 90
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=25.78 E-value=2.4e+02 Score=26.11 Aligned_cols=56 Identities=13% Similarity=-0.010 Sum_probs=40.6
Q ss_pred EEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHH
Q 012015 99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH 154 (473)
Q Consensus 99 ~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 154 (473)
.+....+-.-..+-+++.+.|..++.+-|...+......++..++++++++..+.+
T Consensus 115 vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~ 170 (398)
T 4d9i_A 115 FATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDD 170 (398)
T ss_dssp EEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHHH
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHHH
Confidence 34466777888888889999987665545545555666778999999998875443
No 91
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=25.33 E-value=2e+02 Score=25.89 Aligned_cols=59 Identities=10% Similarity=-0.006 Sum_probs=40.2
Q ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccc
Q 012015 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS 151 (473)
Q Consensus 92 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 151 (473)
+++|+.|.... .+-.-..+.+++.+.|..++.+-|...+......++..++++++++..
T Consensus 75 ~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 75 LKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp SCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 46777665554 477777777888889986655444433445556788889999998753
No 92
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=25.26 E-value=2.2e+02 Score=25.32 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=42.1
Q ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccc
Q 012015 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS 151 (473)
Q Consensus 92 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 151 (473)
+++|....+....+..-..+.+++.+.|..++.+-|...+......++..++++++++..
T Consensus 63 ~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 456654444566788888888888899987666544434445556788889999998753
No 93
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=24.74 E-value=2.4e+02 Score=25.43 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=36.9
Q ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCC-------CCHHHHHHHHhhcCCeEEEE
Q 012015 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV-------NTESEISRQIQLSNPVIAFA 148 (473)
Q Consensus 92 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~ii~ 148 (473)
+++||.|.+..+ .+.....++...|+.++.++.. .+.+.++..++..++++|+.
T Consensus 106 ~~~gd~vl~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i 166 (391)
T 3dzz_A 106 TSPGDQILVQEP---VYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVF 166 (391)
T ss_dssp SCTTCEEEECSS---CCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEE
T ss_pred CCCCCeEEECCC---CcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEE
Confidence 367888775443 3334455667788887776653 68899999887667777754
No 94
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=24.28 E-value=2.6e+02 Score=26.31 Aligned_cols=58 Identities=2% Similarity=-0.088 Sum_probs=41.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccchHH
Q 012015 97 TAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH 154 (473)
Q Consensus 97 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 154 (473)
+..+....+..-..+-+++.++|..++.+=|...+......++..++++++++..+.+
T Consensus 161 ~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~ 218 (442)
T 3ss7_X 161 YSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGV 218 (442)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHH
Confidence 3556666788888888889999986655444444445566778899999999876543
No 95
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=24.21 E-value=58 Score=28.38 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.3
Q ss_pred HHHHHHhHHhcCCCCCCEEEEEeCC
Q 012015 80 NSLASYLQNVTRLSKNDTAFVLSTN 104 (473)
Q Consensus 80 ~~la~~L~~~~g~~~gd~V~i~~~~ 104 (473)
..+...|++ +|+++||.|.+...-
T Consensus 18 ~~l~~~L~~-LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRK-LGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHH-HTCCTTCEEEEEECT
T ss_pred HHHHHHHHH-cCCCCCCEEEEEech
Confidence 456778988 999999999999853
No 96
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=24.20 E-value=1.2e+02 Score=23.39 Aligned_cols=9 Identities=33% Similarity=0.604 Sum_probs=5.4
Q ss_pred CCCcEEEEC
Q 012015 56 DDTVALINS 64 (473)
Q Consensus 56 p~~~a~~~~ 64 (473)
|.++|++-.
T Consensus 13 p~~IavIGa 21 (145)
T 2duw_A 13 TRTIALVGA 21 (145)
T ss_dssp CCCEEEESC
T ss_pred CCEEEEECc
Confidence 556777644
No 97
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=23.19 E-value=2.3e+02 Score=26.55 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=14.3
Q ss_pred HHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEE
Q 012015 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAF 147 (473)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 147 (473)
+...|+.++.++.+ +.+.++..++. +.++|+
T Consensus 142 ~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~ 172 (430)
T 3ri6_A 142 LPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLF 172 (430)
T ss_dssp HHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEE
T ss_pred HHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEE
Confidence 34455555555443 44445444432 344444
No 98
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=22.67 E-value=1.8e+02 Score=26.13 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=36.9
Q ss_pred CCCCCCEEEEEeCCCC------cHHHHHHHH-HHhCCeEecCCCCC--------C----HHHHHHHHhhcCCeEEEEcc
Q 012015 91 RLSKNDTAFVLSTNSI------EIPILYFSL-LSLGVIISPANPVN--------T----ESEISRQIQLSNPVIAFATS 150 (473)
Q Consensus 91 g~~~gd~V~i~~~~~~------~~~~~~lA~-~~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~ii~~~ 150 (473)
.+++||+|+|++|.+. +-+-..... -..|..++.-+.-. + .+++...+.+-++++|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 5789999999998764 122222222 23477766433211 1 24566677778899999864
No 99
>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*
Probab=22.48 E-value=1.2e+02 Score=24.48 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=29.4
Q ss_pred ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHH
Q 012015 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112 (473)
Q Consensus 68 ~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~ 112 (473)
.-+|..|+.+++.++|+.+.+.++ ..+.|.+...++--.++.-
T Consensus 12 vlis~~~I~~~i~rlA~eI~e~~~--~~~~vlvgIl~Gg~~fa~~ 54 (181)
T 3acd_A 12 VQISAEAIKKRVEELGGEIARDYQ--GKTPHLICVLNGAFIFMAD 54 (181)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHTT--TCCCEEEEEETTTHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHHHhC--CCCcEEEEEecCcHHHHHH
Confidence 468999999999999999988443 2344555555555444433
No 100
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=22.32 E-value=2.2e+02 Score=25.46 Aligned_cols=55 Identities=7% Similarity=-0.010 Sum_probs=31.1
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCC----CCHHHHHHHHhhcCCeEEEE
Q 012015 93 SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV----NTESEISRQIQLSNPVIAFA 148 (473)
Q Consensus 93 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~ii~ 148 (473)
++||.|.+..+.-..+.....++...|+.++.++.+ .+.+.+...++. ++++|+.
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~ 145 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSI 145 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEE
Confidence 578887665443333333333345668766655432 466777777654 5566654
No 101
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=22.31 E-value=66 Score=28.16 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=19.3
Q ss_pred HHHHHhHHhcCCCCCCEEEEEeCC
Q 012015 81 SLASYLQNVTRLSKNDTAFVLSTN 104 (473)
Q Consensus 81 ~la~~L~~~~g~~~gd~V~i~~~~ 104 (473)
.+...|++ +|+++||.|.+...=
T Consensus 17 ~L~~~L~~-LGI~~Gd~llVHsSl 39 (273)
T 2nyg_A 17 SITEDLKA-LGLKKGMTVLVHSSL 39 (273)
T ss_dssp HHHHHHHH-HTCCTTCEEEEEECS
T ss_pred HHHHHHHH-cCCCCCCEEEEEech
Confidence 46678888 999999999999853
No 102
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=22.14 E-value=67 Score=28.25 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=23.6
Q ss_pred CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEeCC
Q 012015 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTN 104 (473)
Q Consensus 67 ~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~i~~~~ 104 (473)
+..+|-.+| ...|++ +|+++||.|.+...-
T Consensus 19 ~~~~T~~~L-------~~~L~~-LGI~~Gd~llVHsSL 48 (286)
T 3sma_A 19 RELVTRDRL-------ASDLAA-LGVRPGGVLLVHASL 48 (286)
T ss_dssp CCEECHHHH-------HHHHHH-HTCCTTCEEEEEECS
T ss_pred CCCcCHHHH-------HHHHHH-cCCCCCCEEEEEech
Confidence 566776655 557888 999999999998754
No 103
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=22.13 E-value=2.6e+02 Score=22.87 Aligned_cols=56 Identities=9% Similarity=0.027 Sum_probs=40.6
Q ss_pred CCEEEEEeCCC-C---cHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcc
Q 012015 95 NDTAFVLSTNS-I---EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS 150 (473)
Q Consensus 95 gd~V~i~~~~~-~---~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 150 (473)
.-+|.+.+..+ . ...++-..+-..|..++.+..+.+.+++...+++.++++|..+.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~ 147 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSA 147 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEEC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 34666655443 2 23333344457799999999999999999999999999998654
No 104
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=21.88 E-value=1.7e+02 Score=25.96 Aligned_cols=74 Identities=8% Similarity=0.148 Sum_probs=44.9
Q ss_pred eecHHHHHHHHHH--HH-HHhHHhcCCCCCCEEEEEe-CCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCe
Q 012015 69 RVSFSEFTRRTNS--LA-SYLQNVTRLSKNDTAFVLS-TNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPV 144 (473)
Q Consensus 69 ~~Ty~el~~~~~~--la-~~L~~~~g~~~gd~V~i~~-~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 144 (473)
.+++.+....... .| +.|. +.++++|++|+|.. .-++-+.++.+|- ..|+.++-+. +.++ ..++++.++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~ 198 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALN-QAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAE 198 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHH-HTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCS
T ss_pred CCCHHHHhhhhhHHHHHHHHHH-hcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCC
Confidence 4566665433222 22 3343 47999999999986 4455666665554 5688766543 3444 4556677777
Q ss_pred EEEE
Q 012015 145 IAFA 148 (473)
Q Consensus 145 ~ii~ 148 (473)
.++.
T Consensus 199 ~~i~ 202 (321)
T 3tqh_A 199 QCIN 202 (321)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6664
No 105
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=21.83 E-value=1.1e+02 Score=24.04 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=26.9
Q ss_pred CHHHHhcccccCCCCCCCCCcEEEECCCCceecHHHHHHHH----HHHHHHhHH
Q 012015 39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRT----NSLASYLQN 88 (473)
Q Consensus 39 ~l~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~----~~la~~L~~ 88 (473)
.+.+.+++...+- | . |++.||+|+.+.+ +.++..+.+
T Consensus 71 ~fq~~V~~~l~~I----P-------~--G~~~tYg~iA~~~g~p~RaVG~A~~~ 111 (156)
T 1wrj_A 71 EFRIRVFKEVMRI----K-------W--GEVRTYKQVADAVKTSPRAVGTALSK 111 (156)
T ss_dssp HHHHHHHHHHTTS----C-------T--TCCEEHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC----C-------C--CceEcHHHHHHHhCCCccHHHHHHHh
Confidence 4666666666666 4 2 8999999999887 567777665
No 106
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=21.77 E-value=3.9e+02 Score=24.13 Aligned_cols=54 Identities=6% Similarity=-0.012 Sum_probs=36.4
Q ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhc---CCeEEEEc
Q 012015 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLS---NPVIAFAT 149 (473)
Q Consensus 92 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~---~~~~ii~~ 149 (473)
+++||.|.+..+. +.....++...|+.+++++. .+.+.++..++.. +++++++.
T Consensus 124 ~~~gd~V~~~~p~---~~~~~~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~ 180 (398)
T 3a2b_A 124 MGRNDYILLDERD---HASIIDGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTD 180 (398)
T ss_dssp SCTTCEEEEETTC---CHHHHHHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred hCCCCEEEECCcc---CHHHHHHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEe
Confidence 4678888776543 33334456677888887764 5678888888765 56777654
No 107
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=21.67 E-value=1.7e+02 Score=26.82 Aligned_cols=54 Identities=15% Similarity=0.045 Sum_probs=37.4
Q ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEc
Q 012015 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFAT 149 (473)
Q Consensus 92 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~ 149 (473)
+++||.|.+--+ .+....-++...|+.+++++. .+.+.++..++..+++++++.
T Consensus 140 ~~~gd~Vl~~~~---~~~~~~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~ 193 (409)
T 3kki_A 140 CQPNTNVYIDFF---AHMSLWEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVD 193 (409)
T ss_dssp CCTTCEEEEETT---SCHHHHHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCEEEECCC---cCHHHHHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEEC
Confidence 368888876433 344455567778988887754 568888888887666777765
No 108
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=21.38 E-value=3.3e+02 Score=23.86 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=40.9
Q ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcc
Q 012015 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS 150 (473)
Q Consensus 92 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 150 (473)
+++|+.|.... .+-.-..+.+++.+.|..++.+-|...+......++..++++++++.
T Consensus 58 ~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 58 IKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp CCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 36676665554 57777777788889998766654444444555678888999999875
No 109
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=21.36 E-value=2e+02 Score=25.64 Aligned_cols=76 Identities=9% Similarity=0.156 Sum_probs=46.3
Q ss_pred eecHHHHHHHHH---HHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeE
Q 012015 69 RVSFSEFTRRTN---SLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI 145 (473)
Q Consensus 69 ~~Ty~el~~~~~---~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 145 (473)
.+++.+...... ..-+.|.. .++++|++|+|...-++-..++.+|- ..|+.++-++. +++.++ ++++.++..
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~ 213 (340)
T 3s2e_A 139 KVGFVEIAPILCAGVTVYKGLKV-TDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKLN-LARRLGAEV 213 (340)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHT-TTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHTTCSE
T ss_pred CCCHHHhhcccchhHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHHH-HHHHcCCCE
Confidence 466666542211 11234444 78999999999877556766666665 46887665533 344444 456677777
Q ss_pred EEEc
Q 012015 146 AFAT 149 (473)
Q Consensus 146 ii~~ 149 (473)
++..
T Consensus 214 ~i~~ 217 (340)
T 3s2e_A 214 AVNA 217 (340)
T ss_dssp EEET
T ss_pred EEeC
Confidence 6643
No 110
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=21.27 E-value=2.1e+02 Score=25.94 Aligned_cols=56 Identities=13% Similarity=0.017 Sum_probs=34.8
Q ss_pred cCCCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCC--CC---CCHHHHHHHHhhcCCeEEEEc
Q 012015 90 TRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN--PV---NTESEISRQIQLSNPVIAFAT 149 (473)
Q Consensus 90 ~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~--~~---~~~~~l~~~l~~~~~~~ii~~ 149 (473)
+++++||.|.+..+.- ....-++...|+.++.++ ++ .+.+.++..++. ++++|+..
T Consensus 74 ~~~~~gd~Vl~~~~~~---~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 74 LGIGEGDEVITPSMTW---VSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp TTCCTTCEEEEESSSC---HHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred cCCCCCCEEEeCCCcc---HhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 4568899887765432 233445567788666554 32 567888877764 56666653
No 111
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=21.16 E-value=1.5e+02 Score=26.84 Aligned_cols=54 Identities=15% Similarity=0.058 Sum_probs=39.2
Q ss_pred EEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccch
Q 012015 99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV 152 (473)
Q Consensus 99 ~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~ 152 (473)
.+....+-.-..+-+++.+.|..++.+-|...+......++..++++++++...
T Consensus 79 vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~ 132 (346)
T 3l6b_A 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSD 132 (346)
T ss_dssp EEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSH
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 344456777788888899999866655454445556777889999999987654
No 112
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=21.06 E-value=2.9e+02 Score=21.28 Aligned_cols=71 Identities=13% Similarity=0.054 Sum_probs=44.3
Q ss_pred HHHHHHHHhHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHh---hcCCeEEEEccch
Q 012015 78 RTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQ---LSNPVIAFATSSV 152 (473)
Q Consensus 78 ~~~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~---~~~~~~ii~~~~~ 152 (473)
+...+...|.+ . .+.++.|+++.....-...-.+...|..+..++..++..+....++ ..+.+++++.+..
T Consensus 22 K~~~L~~ll~~-~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 95 (163)
T 2hjv_A 22 KFSLLKDVLMT-E---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVA 95 (163)
T ss_dssp HHHHHHHHHHH-H---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGG
T ss_pred HHHHHHHHHHh-c---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChh
Confidence 45556666665 2 3456777775544444444444556888888999988876655554 4566777766443
No 113
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=20.81 E-value=2.7e+02 Score=24.80 Aligned_cols=58 Identities=21% Similarity=0.141 Sum_probs=42.2
Q ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcc
Q 012015 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS 150 (473)
Q Consensus 92 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 150 (473)
+++++.|.. ...+..-..+-+++.+.|..++.+-|...+......++..++++++++.
T Consensus 70 l~~~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 127 (325)
T 3dwg_A 70 LRPGATILE-PTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAA 127 (325)
T ss_dssp CCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECS
T ss_pred CCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 467777655 4567777888888899998766554544445556677889999999875
No 114
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=20.13 E-value=3.9e+02 Score=22.54 Aligned_cols=64 Identities=6% Similarity=-0.057 Sum_probs=30.7
Q ss_pred HHHhHHhcCCCCCCEEEEEeCCCCc-HHHHH-----HHHHHhCCe-EecCCCCCCHHHHH---HHHhhcCCeEEEEcc
Q 012015 83 ASYLQNVTRLSKNDTAFVLSTNSIE-IPILY-----FSLLSLGVI-ISPANPVNTESEIS---RQIQLSNPVIAFATS 150 (473)
Q Consensus 83 a~~L~~~~g~~~gd~V~i~~~~~~~-~~~~~-----lA~~~~G~~-~v~l~~~~~~~~l~---~~l~~~~~~~ii~~~ 150 (473)
|+.|+. ++...|+++.++... +...+ -++...|.. ++..+...+.+... ..+...+++.+|...
T Consensus 2 Ar~L~~----~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 2 SLTLYQ----KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ----------CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred chhhhc----CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 556655 556789999887443 22222 234456776 55555555544322 233345666655443
Done!