BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012016
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 91/176 (51%), Gaps = 17/176 (9%)
Query: 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 275
+T++ + +Q +I + +E VK + + +G A +G +LYGPPGTGK+ L A+A+
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204
Query: 276 YLNFDVYDLELTEL------RSNSDLRTLLVATANR--SILVVEDIDCTIDLQDRLPADI 327
+ + + EL + +R L V SI+ +++ID + +
Sbjct: 205 HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTR----VEG 260
Query: 328 AGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 383
+G G+ +Q+ T+ LN +DG +S + I+ TN + LDPALLRPGR+D
Sbjct: 261 SGGGDSEVQR---TMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLRPGRID 311
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 17/187 (9%)
Query: 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
TF+ + EQ ++ + +E +K + ++RVG +G LLYGPPGTGK+ L A+A
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238
Query: 277 L--NF------DVYDLELTELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIA 328
+ NF + D + E S +R + ++ +D D +
Sbjct: 239 IGANFIFSPASGIVDKYIGE--SARIIREMFAYAKEHEPCII-----FMDEVDAIGGRRF 291
Query: 329 GEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHM 388
EG ++ + TL L +DG + + G +II+ TN + LDPALLRPGR+D V +
Sbjct: 292 SEGTSADREIQRTLMELLTQMDG-FDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEI 349
Query: 389 SYCTPSG 395
+G
Sbjct: 350 PLPNEAG 356
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 19/166 (11%)
Query: 227 QKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286
QK +I + +E + + D Y ++G RG LLYGPPGTGK+ L+ A+AN +
Sbjct: 180 QKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239
Query: 287 TEL---------RSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQ 337
+E R D+ L A SI+ ++++D R A + E +Q+
Sbjct: 240 SEFVHKYLGEGPRMVRDVFRLARENAP-SIIFIDEVDSIA--TKRFDAQTGSDRE--VQR 294
Query: 338 NKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 383
L L +DG S + ++ TN + LDPALLRPGR+D
Sbjct: 295 ---ILIELLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLD 335
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 210 VNLDHP-ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSS 268
+N + P F+ +A +E K ++++ ++ F+K + Y +G +G LL GPPGTGK+
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTL 59
Query: 269 LIAAMANYLNFDVYDL------ELTELRSNSDLRTLLVATANR---SILVVEDIDCTIDL 319
L A+A + + + E+ S +R L TA + SI+ +++ID I
Sbjct: 60 LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLF-ETAKKQAPSIIFIDEIDA-IGK 117
Query: 320 QDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRP 379
++G E + TL+ L +DG S I++ TN E LDPAL+RP
Sbjct: 118 SRAAGGVVSGNDE-----REQTLNQLLAEMDGFGSENA-PVIVLAATNRPEILDPALMRP 171
Query: 380 GRMDVHV 386
GR D V
Sbjct: 172 GRFDRQV 178
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 226 EQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285
E+ + ++++ F+K + R+G +G LL GPPGTGK+ L A+A N + +
Sbjct: 22 EEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHI- 80
Query: 286 LTELRSNSDLRTLLVATANRS--------------ILVVEDIDCTIDLQDRLPADIAGEG 331
S SD L V I+ +++ID + AG G
Sbjct: 81 -----SGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG------AGLG 129
Query: 332 EGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 383
G ++ + TL+ L +DG S G I++ TN + LDPALLRPGR D
Sbjct: 130 GGHDEREQ-TLNQLLVEMDGFDSKEGI--IVMAATNRPDILDPALLRPGRFD 178
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 17/174 (9%)
Query: 218 FETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277
+E + ++Q +I + +E +K + + +VG +G LLYGPPGTGK+ L A+A
Sbjct: 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75
Query: 278 NFDVYDLELTEL------RSNSDLRTL--LVATANRSILVVEDIDCTIDLQDRLPADIAG 329
N + +EL S ++ + L SI+ +++ID R A G
Sbjct: 76 NATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIA--AKRTDALTGG 133
Query: 330 EGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 383
+ E +Q+ TL L +DG + + GD +II TN + LDPA+LRPGR D
Sbjct: 134 DRE--VQR---TLMQLLAEMDG-FDARGDVKII-GATNRPDILDPAILRPGRFD 180
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 226 EQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285
E+ + ++++ F+K + R+G +G LL GPPGTG + L A+A N + +
Sbjct: 22 EEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHI- 80
Query: 286 LTELRSNSDLRTLLVATANRS--------------ILVVEDIDCTIDLQDRLPADIAGEG 331
S SD L V I+ +++ID + AG G
Sbjct: 81 -----SGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG------AGLG 129
Query: 332 EGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 383
G ++ + TL+ L +DG S G I++ TN + LDPALLRPGR D
Sbjct: 130 GGHDEREQ-TLNQLLVEMDGFDSKEGI--IVMAATNRPDILDPALLRPGRFD 178
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 32/185 (17%)
Query: 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
TF +A E K ++ + +E +++ ++++G +G L+ GPPGTGK+ L A+A
Sbjct: 10 TFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 277 LNFDVYDLELTELRSNSDLRTLLVAT--------------ANRSILVVEDIDCTIDLQDR 322
+ + S SD + V A I+ +++ID +
Sbjct: 69 AKVPFFTI------SGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG- 121
Query: 323 LPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF-TTNHKEKLDPALLRPGR 381
AG G G ++ + TL+ L +DG G+E IIV TN + LDPALLRPGR
Sbjct: 122 -----AGLGGGHDEREQ-TLNQMLVEMDGFE---GNEGIIVIAATNRPDVLDPALLRPGR 172
Query: 382 MDVHV 386
D V
Sbjct: 173 FDRQV 177
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 17/167 (10%)
Query: 225 QEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLNF 279
+ Q +I + +E + + Y +G +G +LYG PGTGK+ L A+AN +L
Sbjct: 188 ESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247
Query: 280 DVYDLELTELRSNSDL--RTLLVATANR-SILVVEDIDCTIDLQDRLPADIAGEGEGPIQ 336
+L L L + VA N SI+ +++ID R ++ GE E IQ
Sbjct: 248 VGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAI--GTKRYDSNSGGERE--IQ 303
Query: 337 QNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 383
+ T+ LN +DG + GD ++I+ TN E LDPAL+RPGR+D
Sbjct: 304 R---TMLELLNQLDG-FDDRGDVKVIM-ATNKIETLDPALIRPGRID 345
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 21/165 (12%)
Query: 239 VKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL---ELTELRSNSDL 295
+KR D ++ +G +G L+YGPPGTGK+ L A A N L +L ++
Sbjct: 201 MKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGA 260
Query: 296 RTL-----LVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFID 350
+ + L +I+ ++++D R ++ +G+ E +Q+ T+ LN +D
Sbjct: 261 KLVRDAFALAKEKAPTIIFIDELDAIG--TKRFDSEKSGDRE--VQR---TMLELLNQLD 313
Query: 351 GLWSSCGDERIIVF-TTNHKEKLDPALLRPGRMDVHVHMSYCTPS 394
G S D+R+ V TN + LDPALLR GR+D + + PS
Sbjct: 314 GFSS---DDRVKVLAATNRVDVLDPALLRSGRLDRKIE--FPLPS 353
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 91/184 (49%), Gaps = 17/184 (9%)
Query: 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
+F+ +A E K ++ + ++ ++K + + ++G +G LL GPPG GK+ L A+A
Sbjct: 4 SFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
Query: 277 LNFDVYDLELTEL------RSNSDLRTLLVATANRS--ILVVEDIDCTIDLQDRLPADIA 328
+ E + +R+L R+ I+ +++ID + + ++
Sbjct: 63 AQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDA---VGKKRSTTMS 119
Query: 329 GEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHM 388
G +Q TL+ L +DG+ ++ D I++ +TN + LD AL+RPGR+D HV +
Sbjct: 120 GFSNTEEEQ---TLNQLLVEMDGMGTT--DHVIVLASTNRADILDGALMRPGRLDRHVFI 174
Query: 389 SYCT 392
T
Sbjct: 175 DLPT 178
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
T+E + ++ K ++ + ++ V+ D + + G +G L YGPPG GK+ L A+AN
Sbjct: 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72
Query: 277 LNFDVYDLELTEL------RSNSDLRTLL--VATANRSILVVEDIDCTIDLQDRLPADIA 328
+ ++ EL S +++R + A +L +++D + D
Sbjct: 73 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 132
Query: 329 GEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHM 388
G + I Q L +DG+ S I+ TN + +DPA+LRPGR+D +++
Sbjct: 133 GAADRVINQ-------ILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 183
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
T+ + ++Q K+ + +E + + + +G +G LLYGPPGTGK+ A+AN
Sbjct: 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266
Query: 277 LN---FDVYDLELTELRSNSDLRTL-----LVATANRSILVVEDIDCTIDLQDRLPADIA 328
+ V EL + R + + T I+ ++ID + D
Sbjct: 267 TDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGAR----FDDG 322
Query: 329 GEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHM 388
G+ +Q+ + L + +DG + G+ +++ F TN LDPALLRPGR+D V
Sbjct: 323 AGGDNEVQRTMLEL---ITQLDG-FDPRGNIKVM-FATNRPNTLDPALLRPGRIDRKVEF 377
Query: 389 S 389
S
Sbjct: 378 S 378
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
T+E + ++ K ++ + ++ V+ D + + G +G L YGPPG GK+ L A+AN
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 277 LNFDVYDLELTEL------RSNSDLRTLL--VATANRSILVVEDIDCTIDLQDRLPADIA 328
+ ++ EL S +++R + A +L +++D + D
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 594
Query: 329 GEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHM 388
G + I Q L +DG+ S I+ TN + +DPA+LRPGR+D +++
Sbjct: 595 GAADRVINQ-------ILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 225 QEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284
++Q +I + +E ++ ++ +G RG LLYGPPGTGK+ + A+AN + +
Sbjct: 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 285 ELTEL------RSNSDLRTLLVATANR--SILVVEDIDCTIDLQDRLPADIAGEGEGPIQ 336
E+ S S+LR +I+ ++++D +++ ++
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV--------- 320
Query: 337 QNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSG 395
+ +S L +DGL I++ TN +DPAL R GR D V + +G
Sbjct: 321 -ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
T+E + ++ K ++ + ++ V+ D + + G +G L YGPPG GK+ L A+AN
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 277 LNFDVYDLELTEL------RSNSDLRTLL--VATANRSILVVEDIDCTIDLQDRLPADIA 328
+ ++ EL S +++R + A +L +++D + D
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 594
Query: 329 GEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHM 388
G + I Q L +DG+ S I+ TN + +DPA+LRPGR+D +++
Sbjct: 595 GAADRVINQ-------ILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 225 QEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284
++Q +I + +E ++ ++ +G RG LLYGPPGTGK+ + A+AN + +
Sbjct: 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 285 ELTEL------RSNSDLRTLLVATANR--SILVVEDIDCTIDLQDRLPADIAGEGEGPIQ 336
E+ S S+LR +I+ ++++D +++ ++
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV--------- 320
Query: 337 QNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSG 395
+ +S L +DGL I++ TN +DPAL R GR D V + +G
Sbjct: 321 -ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 225 QEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284
++Q +I + +E ++ ++ +G RG LLYGPPGTGK+ + A+AN + +
Sbjct: 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 285 ELTEL------RSNSDLRTLLVATANR--SILVVEDIDCTIDLQDRLPADIAGEGEGPIQ 336
E+ S S+LR +I+ ++++D +++ ++
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV--------- 320
Query: 337 QNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSG 395
+ +S L +DGL I++ TN +DPAL R GR D V + +G
Sbjct: 321 -ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 225 QEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284
++Q +I + +E ++ ++ +G RG LLYGPPGTGK+ + A+AN + +
Sbjct: 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 285 ELTEL------RSNSDLRTLLVATANR--SILVVEDIDCTIDLQDRLPADIAGEGEGPIQ 336
E+ S S+LR +I+ ++++D +++ ++
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV--------- 320
Query: 337 QNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSG 395
+ +S L +DGL I++ TN +DPAL R GR D V + +G
Sbjct: 321 -ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query: 218 FETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277
++ + ++Q +I + +E ++ ++ +G RG LLYGPPGTGK+ + A+AN
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 278 NFDVYDLELTEL------RSNSDLRTLLVATANR--SILVVEDIDCTIDLQDRLPADIAG 329
+ + E+ S S+LR +I+ ++++D +++ ++
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV-- 320
Query: 330 EGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMS 389
+ +S L +DGL I++ TN +DPAL R GR D V +
Sbjct: 321 --------ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Query: 390 YCTPSG 395
+G
Sbjct: 371 IPDATG 376
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 225 QEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284
++Q +I + +E ++ ++ +G RG LLYGPPGTGK+ + A+AN + +
Sbjct: 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 285 ELTEL------RSNSDLRTLLVATANR--SILVVEDIDCTIDLQDRLPADIAGEGEGPIQ 336
E+ S S+LR +I+ ++++D +++ ++
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV--------- 320
Query: 337 QNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSG 395
+ +S L +DGL I++ TN +DPAL R GR D V + +G
Sbjct: 321 -ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 65/161 (40%), Gaps = 25/161 (15%)
Query: 238 FVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRT 297
F+K + +G +G LL GPPG GK+ L A+A S SD
Sbjct: 49 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITA------SGSDFVE 102
Query: 298 LLVA-----------TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFL 346
+ V TA R + ID ID R G G +Q TL+ L
Sbjct: 103 MFVGVGAARVRDLFETAKRHAPCIVFID-EIDAVGRKRGSGVGGGNDEREQ---TLNQLL 158
Query: 347 NFIDGLWSSCGDERIIVF-TTNHKEKLDPALLRPGRMDVHV 386
+DG D I+V TN + LDPALLRPGR D +
Sbjct: 159 VEMDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQI 196
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 65/161 (40%), Gaps = 25/161 (15%)
Query: 238 FVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRT 297
F+K + +G +G LL GPPG GK+ L A+A S SD
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITA------SGSDFVE 111
Query: 298 LLVA-----------TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFL 346
+ V TA R + ID ID R G G +Q TL+ L
Sbjct: 112 MFVGVGAARVRDLFETAKRHAPCIVFID-EIDAVGRKRGSGVGGGNDEREQ---TLNQLL 167
Query: 347 NFIDGLWSSCGDERIIVF-TTNHKEKLDPALLRPGRMDVHV 386
+DG D I+V TN + LDPALLRPGR D +
Sbjct: 168 VEMDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQI 205
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 66/163 (40%), Gaps = 25/163 (15%)
Query: 238 FVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRT 297
F+K + +G +G LL GPPG GK+ L A+A S SD
Sbjct: 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITA------SGSDFVE 87
Query: 298 LLVA-----------TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFL 346
+ V TA R + ID ID R G G + + TL+ L
Sbjct: 88 MFVGVGAARVRDLFETAKRHAPCIVFID-EIDAVGRKRGSGVGGGN---DEREQTLNQLL 143
Query: 347 NFIDGLWSSCGDERIIVF-TTNHKEKLDPALLRPGRMDVHVHM 388
+DG D I+V TN + LDPALLRPGR D + +
Sbjct: 144 VEMDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIAI 183
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 66/163 (40%), Gaps = 25/163 (15%)
Query: 238 FVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRT 297
F+K + +G +G LL GPPG GK+ L A+A S SD
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITA------SGSDFVE 111
Query: 298 LLVA-----------TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFL 346
+ V TA R + ID ID R G G + + TL+ L
Sbjct: 112 MFVGVGAARVRDLFETAKRHAPCIVFID-EIDAVGRKRGSGVGGGN---DEREQTLNQLL 167
Query: 347 NFIDGLWSSCGDERIIVF-TTNHKEKLDPALLRPGRMDVHVHM 388
+DG D I+V TN + LDPALLRPGR D + +
Sbjct: 168 VEMDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 173 PCVEKEAKSVQQESKTIKILTVNYNNLYCN-WTDAWIPVNLDHPATFETLAMEQEQKTKI 231
P A +++ K + + N NL N D V D A + LA + Q+ I
Sbjct: 74 PSTPTTATRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAG-QDLAKQALQEIVI 132
Query: 232 MQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS 291
+ L R + + + +A RG LL+GPPG GK+ L A+A N +++ L S
Sbjct: 133 LPSL-----RPELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186
Query: 292 N--SDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFI 349
+ L+ A V ++ +I D++ + + EG ++ + FL
Sbjct: 187 KYVGEGEKLVRAL----FAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEF 242
Query: 350 DGLWSSCGDERIIVF-TTNHKEKLDPALLR 378
DG+ S GD+R++V TN ++LD A+LR
Sbjct: 243 DGVQ-SAGDDRVLVMGATNRPQELDEAVLR 271
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 239 VKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTL 298
V+ D ++ +G G LL GPPG GK+ L A+AN + ++ EL + +
Sbjct: 30 VRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN------M 83
Query: 299 LVATANRSILVV-----EDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW 353
V + R++ V C I D + A + + ++ L +DGL
Sbjct: 84 YVGESERAVRQVFQRAKNSAPCVI-FFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE 142
Query: 354 SSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPS 394
+ + I+ TN + +DPA+LRPGR+D + + P+
Sbjct: 143 AR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 21/177 (11%)
Query: 212 LDH--PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSL 269
+DH P +E +A + K I + + + R D + + + +G LL+GPPGTGK+ +
Sbjct: 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLI 133
Query: 270 IAAMANYLNFDVYDLELTELRS-----NSDLRTLLVATA---NRSILVVEDIDCTIDLQD 321
+A+ + + + L S + L A A +++ +++ID + +
Sbjct: 134 GKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR- 192
Query: 322 RLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLR 378
G+G + ++ + FL +DG +S D ++V TN +++D A R
Sbjct: 193 ---------GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR 240
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 235 LERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----------YLNFDVYD 283
+E F D+ + A ++G LYG G GKS L+AAMA+ L+F +
Sbjct: 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193
Query: 284 LELTELRSNSDLRTLLVATANRSILVVEDIDC 315
+++ SN ++ + A N +L+++DI
Sbjct: 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGA 225
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 19/148 (12%)
Query: 250 KAWKRGYLLYGPPGTGKSSLIAAM-----ANYLNFDVYDLELTELRSNSDLRTLLVATAN 304
+A +G LL+GPPG GK+ L A+ A +LN L + L L A A
Sbjct: 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR 110
Query: 305 R---SILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERI 361
SI+ ++++D + + + ++ + FL DGL + +RI
Sbjct: 111 HMQPSIIFIDEVDSLLSERSSSEH----------EASRRLKTEFLVEFDGLPGNPDGDRI 160
Query: 362 IVF-TTNHKEKLDPALLRPGRMDVHVHM 388
+V TN ++LD A LR V+V +
Sbjct: 161 VVLAATNRPQELDEAALRRFTKRVYVSL 188
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 203 WTDAWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWK---RGYLLY 259
WT + P NL + M+ + ++ +K+ ++ GK R +LY
Sbjct: 29 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWEN-----SKKNSFKHAGKDGSGVFRAAMLY 83
Query: 260 GPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVATANRSI 307
GPPG GK++ +A L +D+ + +++RS +TLL A ++
Sbjct: 84 GPPGIGKTTAAHLVAQELGYDILEQNASDVRS----KTLLNAGVKNAL 127
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS-----NSDLRTLLVATANR---S 306
G LLYGPPGTGKS L A+A N + + ++L S + L L A A S
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 121
Query: 307 ILVVEDIDC 315
I+ ++++D
Sbjct: 122 IIFIDEVDA 130
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS 291
G LLYGPPGTGKS L A+A N + + ++L S
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS-----NSDLRTLLVATANR---S 306
G LLYGPPGTGKS L A+A N + + ++L S + L L A A S
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 145
Query: 307 ILVVEDIDC 315
I+ ++ +D
Sbjct: 146 IIFIDQVDA 154
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS 291
G LLYGPPGTGKS L A+A N + + ++L S
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 107
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVY 282
RG LL+GPPGTGKS L A+A N +
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTF 196
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 217 TFETLA--MEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA 274
TF+ LA M E + + K R + +L+GPPGTGK++L +A
Sbjct: 12 TFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIA 71
Query: 275 NYLNFDV 281
Y N DV
Sbjct: 72 RYANADV 78
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVY 282
RG LL+GPPGTGKS L A+A N +
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTF 74
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 243 DYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELT 287
+ ++RV + L+ GP G+GKS+ +AAM +YLN Y LT
Sbjct: 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 257 LLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSD 294
L YGPPGTGK+S I A+A + Y + EL ++ D
Sbjct: 50 LFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL-TELRSNSDL 295
A KR L GP G GKS++ +A LN + YD + E R+ +D+
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADV 47
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 250 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV 281
K R LL GPPGTGK++L A+A L V
Sbjct: 74 KXAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 250 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV 281
K R LL GPPGTGK++L A+A L V
Sbjct: 60 KMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 247 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD 280
R GK R L+ G PGTGK+++ MA L D
Sbjct: 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 258 LYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLR 296
L GPPG GK+SL ++A L + L +R S++R
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 211 NLDHPATFETLAM-----EQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTG 265
L P T ET A+ Q+T I L+ V+ + VG+ + G L+ G G
Sbjct: 112 GLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMG--LFAGSGVG 169
Query: 266 KSSLIAAMANYLNFDVYDLELTELRS 291
KS L+ MA Y DV + L R
Sbjct: 170 KSVLLGMMARYTRADVIVVGLIGERG 195
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 257 LLYGPPGTGKSSLIAAMANYL 277
L YGPPGTGK+S I A+ L
Sbjct: 62 LFYGPPGTGKTSTILALTKEL 82
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 233 QDLERFVKRKDYYRRVGKAWK----RG-----YLLYGPPGTGKSSLIAAMANYLNFDVYD 283
+ L+ F+ +++ +++ A + RG LL GPPG GK++L +A+ L +++
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV 81
Query: 284 LELTELRSNSDLRTLLVATANRSILVVEDI 313
L D+ +L + +L +++I
Sbjct: 82 TSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 233 QDLERFVKRKDYYRRVGKAWK----RG-----YLLYGPPGTGKSSLIAAMANYLNFDVYD 283
+ L+ F+ +++ +++ A + RG LL GPPG GK++L +A+ L +++
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV 81
Query: 284 LELTELRSNSDLRTLLVATANRSILVVEDI 313
L D+ +L + +L +++I
Sbjct: 82 TSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 233 QDLERFVKRKDYYRRVGKAWK----RG-----YLLYGPPGTGKSSLIAAMANYLNFDVYD 283
+ L+ F+ +++ +++ A + RG LL GPPG GK++L +A+ L +++
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV 81
Query: 284 LELTELRSNSDLRTLLVATANRSILVVEDI 313
L D+ +L + +L +++I
Sbjct: 82 TSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 233 QDLERFVKRKDYYRRVGKAWK----RG-----YLLYGPPGTGKSSLIAAMANYLNFDVYD 283
+ L+ F+ +++ +++ A + RG LL GPPG GK++L +A+ L +++
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV 81
Query: 284 LELTELRSNSDLRTLLVATANRSILVVEDI 313
L D+ +L + +L +++I
Sbjct: 82 TSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 253 KRGYLLYGPPGTGKSSLIAAMANYL 277
KR LL G PGTGKS L AMA L
Sbjct: 60 KRHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 233 QDLERFVKRKDYYRRVGKAWK----RG-----YLLYGPPGTGKSSLIAAMANYLNFDVYD 283
+ L+ F+ +++ +++ A + RG LL GPPG GK++L +A+ L +++
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV 81
Query: 284 LELTELRSNSDLRTLLVATANRSILVVEDI 313
L D+ +L + +L +++I
Sbjct: 82 TSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 236 ERFVKRKDYYRRVGKAWKRGY---LLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSN 292
ER ++ Y KA K LL+GPPG GK++L +A+ L ++ +
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 293 SDLRTLLVATANRS-ILVVEDI 313
DL +L + IL +++I
Sbjct: 78 GDLAAILANSLEEGDILFIDEI 99
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 257 LLYGPPGTGKSSLIAAMANYLN 278
L+ GP G+GKS+ IA+M +Y+N
Sbjct: 140 LVTGPTGSGKSTTIASMIDYIN 161
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 236 ERFVKRKDYYRRVGKAWKRGY---LLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSN 292
ER ++ Y KA K LL+GPPG GK++L +A+ L ++ +
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 293 SDLRTLLVATANRS-ILVVEDI 313
DL +L + IL +++I
Sbjct: 78 GDLAAILANSLEEGDILFIDEI 99
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 236 ERFVKRKDYYRRVGKAWKRGY---LLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSN 292
ER ++ Y KA K LL+GPPG GK++L +A+ L ++ +
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 293 SDLRTLLVATANRS-ILVVEDI 313
DL +L + IL +++I
Sbjct: 78 GDLAAILANSLEEGDILFIDEI 99
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS----NSDLRTLL--------- 299
K LL GP G+GK+ + +A +L+ + + T L D+ +L
Sbjct: 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 131
Query: 300 -VATANRSILVVEDIDCTIDLQDR--LPADIAGEG 331
V A + I+ +++ID L + + D++GEG
Sbjct: 132 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEG 166
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 233 QDLERFVKRKDYYRRVGKAWK----RG-----YLLYGPPGTGKSSLIAAMANYLNFDVYD 283
+ L+ F+ +++ +++ A + RG LL GPPG G+++L +A+ L +++
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQTNIHV 81
Query: 284 LELTELRSNSDLRTLLVATANRSILVVEDI 313
L D+ +L + +L +++I
Sbjct: 82 TSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 253 KRGYLLYGPPGTGKSSLI-AAMANYLNFDVYDLELTE 288
KRG +L GPPG+GK+ ++ A+ N +DV + ++
Sbjct: 1048 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSK 1084
>pdb|2VHL|A Chain A, The Three-Dimensional Structure Of The
N-Acetylglucosamine- 6-Phosphate Deacetylase From
Bacillus Subtilis
pdb|2VHL|B Chain B, The Three-Dimensional Structure Of The
N-Acetylglucosamine- 6-Phosphate Deacetylase From
Bacillus Subtilis
Length = 396
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 335 IQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSY 390
+ +N+V +G++ DG S+ ER + + ++L PG +D+H+H Y
Sbjct: 13 VTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPGMIDIHIHGGY 68
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 253 KRGYLLYGPPGTGKSSLI-AAMANYLNFDVYDLELTE 288
KRG +L GPPG+GK+ ++ A+ N +DV + ++
Sbjct: 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSK 1303
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 21/76 (27%)
Query: 203 WTDAWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLY-GP 261
W + + P LD E + +++Q L+ +V+RK+ +LL+ GP
Sbjct: 7 WVEKYRPRTLD----------EVVGQDEVIQRLKGYVERKNI----------PHLLFSGP 46
Query: 262 PGTGKSSLIAAMANYL 277
PGTGK++ A+A L
Sbjct: 47 PGTGKTATAIALARDL 62
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 33/135 (24%)
Query: 203 WTDAWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPP 262
W + + P LD E + +++Q L+ +V+RK+ L GPP
Sbjct: 7 WVEKYRPRTLD----------EVVGQDEVIQRLKGYVERKNIPH---------LLFSGPP 47
Query: 263 GTGKSSLIAAMA----------NYLNFDVYD---LELTELRSNSDLRTLLVATANRSILV 309
GTGK++ A+A N++ + D +++ + RT + A I+
Sbjct: 48 GTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIF 107
Query: 310 VEDIDC-TIDLQDRL 323
+++ D T D Q L
Sbjct: 108 LDEADALTADAQAAL 122
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 236 ERFVKRKDYYRRVGKAWKRGYLLY-GPPGTGKSSLIAAMANYL 277
E VKR +Y + G +LL+ GPPG GK++ A+A L
Sbjct: 31 EHIVKRLKHYVKTGSM---PHLLFAGPPGVGKTTAALALAREL 70
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 275
A+ + + + + K ++ ERFV + GK K G L+G G GK+ L+AA+AN
Sbjct: 22 ASLSDVDLNDDGRIKAIRFAERFVAEYE----PGKKMK-GLYLHGSFGVGKTYLLAAIAN 76
Query: 276 YL 277
L
Sbjct: 77 EL 78
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 209 PVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSS 268
P + HP TF ++ QK ++ L + K +++GPPGTGK++
Sbjct: 176 PASEIHPLTFFNTCLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTT 220
Query: 269 LI 270
+
Sbjct: 221 TV 222
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 209 PVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSS 268
P + HP TF ++ QK ++ L + K +++GPPGTGK++
Sbjct: 176 PASEIHPLTFFNTCLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTT 220
Query: 269 LI 270
+
Sbjct: 221 TV 222
>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase
pdb|3M6I|B Chain B, L-Arabinitol 4-Dehydrogenase
Length = 363
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 80 DAAKVYLGKKTSPSVQRIKVSKLEKENHVNISMESDEQVVDVFNGIKLKWVLVCRQVES 138
D ++ K+ P V KV +L E ES +++V+ F GI+ L C VES
Sbjct: 213 DEGRLKFAKEICPEVVTHKVERLSAE-------ESAKKIVESFGGIEPAVALECTGVES 264
>pdb|3E1A|K Chain K, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Pre- Accommodation State
pdb|3E1C|K Chain K, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Post-Accommodation State
Length = 75
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 49 YFRLRKFCNRFSSQLTIVIDEHD-GLAKNQIYDAAKV 84
YFR RKFC RF+++ + ID D KN I ++ K+
Sbjct: 4 YFRRRKFC-RFTTEGVVEIDYKDIATLKNYITESGKI 39
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 257 LLYGPPGTGKSSLIAAMANYL----------NFDVYDLELTELRSNSDLRTLLVATANRS 306
L+ GP G+GKS+LI + +L N D+ + E EL +RT +
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96
Query: 307 ILVVEDI 313
+ V+E++
Sbjct: 97 MTVLENL 103
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 257 LLYGPPGTGKSSLIAAMANYL----------NFDVYDLELTELRSNSDLRTLLVATANRS 306
L+ GP G+GKS+LI + +L N D+ + E EL +RT +
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96
Query: 307 ILVVEDI 313
+ V+E++
Sbjct: 97 MTVLENL 103
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 257 LLYGPPGTGKSSLIAAMANYL----------NFDVYDLELTELRSNSDLRTLLVATANRS 306
L+ GP G+GKS+LI + +L N D+ + E EL +RT +
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96
Query: 307 ILVVEDI 313
+ V+E++
Sbjct: 97 MTVLENL 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,909,652
Number of Sequences: 62578
Number of extensions: 507895
Number of successful extensions: 1911
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1812
Number of HSP's gapped (non-prelim): 89
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)