Query 012016
Match_columns 473
No_of_seqs 416 out of 2969
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:43:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 1E-100 2E-105 768.3 38.6 436 17-459 2-440 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 1.4E-41 3.1E-46 331.4 20.6 234 210-454 142-393 (406)
3 KOG0734 AAA+-type ATPase conta 100.0 1.5E-38 3.4E-43 321.5 15.2 206 215-433 300-514 (752)
4 KOG0730 AAA+-type ATPase [Post 100.0 7.5E-37 1.6E-41 317.8 18.5 210 214-435 429-647 (693)
5 KOG0731 AAA+-type ATPase conta 100.0 4.3E-36 9.4E-41 320.7 20.1 250 213-471 305-580 (774)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 3.7E-35 8E-40 301.2 21.1 208 214-433 506-726 (802)
7 KOG0733 Nuclear AAA ATPase (VC 100.0 1.7E-35 3.6E-40 303.7 18.2 218 216-448 187-417 (802)
8 KOG0727 26S proteasome regulat 100.0 2.9E-34 6.2E-39 267.7 15.8 215 213-436 149-372 (408)
9 COG0465 HflB ATP-dependent Zn 100.0 5.8E-34 1.3E-38 299.8 16.8 246 213-470 144-416 (596)
10 KOG0736 Peroxisome assembly fa 100.0 6.3E-33 1.4E-37 291.1 19.8 231 211-453 664-906 (953)
11 KOG0726 26S proteasome regulat 100.0 1.9E-33 4.1E-38 266.9 11.3 217 210-435 176-401 (440)
12 PTZ00454 26S protease regulato 100.0 9E-32 1.9E-36 276.9 21.7 232 213-453 139-386 (398)
13 KOG0728 26S proteasome regulat 100.0 1.3E-32 2.9E-37 256.3 13.8 214 212-436 140-364 (404)
14 KOG0729 26S proteasome regulat 100.0 5E-32 1.1E-36 254.5 15.1 219 207-436 165-394 (435)
15 TIGR01241 FtsH_fam ATP-depende 100.0 2.7E-31 5.8E-36 282.8 19.2 248 213-470 49-321 (495)
16 KOG0652 26S proteasome regulat 100.0 1.9E-31 4E-36 250.0 15.2 212 213-435 165-387 (424)
17 KOG0738 AAA+-type ATPase [Post 100.0 8E-31 1.7E-35 257.6 16.9 205 215-433 208-425 (491)
18 CHL00176 ftsH cell division pr 100.0 1E-30 2.2E-35 282.6 19.2 248 213-470 177-448 (638)
19 TIGR03689 pup_AAA proteasome A 100.0 2.2E-30 4.9E-35 271.7 19.0 205 213-432 176-402 (512)
20 PRK03992 proteasome-activating 100.0 4.8E-30 1E-34 264.8 21.1 232 212-454 124-373 (389)
21 KOG0735 AAA+-type ATPase [Post 100.0 5.6E-30 1.2E-34 266.8 21.1 232 205-453 651-893 (952)
22 PTZ00361 26 proteosome regulat 100.0 5.2E-30 1.1E-34 265.6 19.6 233 212-453 176-424 (438)
23 COG1223 Predicted ATPase (AAA+ 100.0 2.6E-30 5.7E-35 242.2 15.6 223 213-452 115-354 (368)
24 TIGR01243 CDC48 AAA family ATP 100.0 2.4E-29 5.3E-34 279.4 22.2 209 214-433 448-665 (733)
25 CHL00195 ycf46 Ycf46; Provisio 100.0 1.7E-29 3.7E-34 265.4 19.6 222 215-452 224-462 (489)
26 COG0464 SpoVK ATPases of the A 100.0 4E-28 8.6E-33 258.8 20.5 228 213-452 236-482 (494)
27 CHL00206 ycf2 Ycf2; Provisiona 100.0 8.9E-29 1.9E-33 280.8 16.1 213 241-470 1618-1900(2281)
28 PF14363 AAA_assoc: Domain ass 100.0 9.6E-29 2.1E-33 205.4 11.7 97 39-135 1-98 (98)
29 KOG0739 AAA+-type ATPase [Post 100.0 5.7E-29 1.2E-33 237.1 11.1 202 215-430 129-340 (439)
30 PRK10733 hflB ATP-dependent me 100.0 3.4E-28 7.3E-33 265.4 16.5 246 215-470 148-418 (644)
31 KOG0651 26S proteasome regulat 100.0 1.7E-28 3.8E-33 235.3 11.8 210 216-436 129-349 (388)
32 PLN00020 ribulose bisphosphate 100.0 1.4E-27 3.1E-32 237.0 18.4 194 216-422 112-328 (413)
33 TIGR01242 26Sp45 26S proteasom 100.0 2.1E-27 4.5E-32 243.8 20.2 212 212-434 115-337 (364)
34 KOG0737 AAA+-type ATPase [Post 99.9 1.8E-27 3.8E-32 234.1 15.0 218 216-452 89-318 (386)
35 KOG0732 AAA+-type ATPase conta 99.9 3.5E-25 7.5E-30 242.9 17.3 214 209-434 255-483 (1080)
36 TIGR01243 CDC48 AAA family ATP 99.9 6.5E-25 1.4E-29 244.0 19.1 208 214-433 173-389 (733)
37 KOG0730 AAA+-type ATPase [Post 99.9 1.7E-24 3.6E-29 226.0 19.1 207 214-435 180-396 (693)
38 KOG0740 AAA+-type ATPase [Post 99.9 9.5E-25 2.1E-29 221.9 13.5 210 213-435 147-366 (428)
39 KOG0741 AAA+-type ATPase [Post 99.9 1.1E-23 2.4E-28 213.9 12.0 209 212-433 212-448 (744)
40 KOG0742 AAA+-type ATPase [Post 99.9 1.7E-22 3.6E-27 200.0 13.6 227 159-406 296-530 (630)
41 PF05496 RuvB_N: Holliday junc 99.8 3.4E-19 7.4E-24 167.0 18.4 190 213-433 18-222 (233)
42 PF00004 AAA: ATPase family as 99.8 6.5E-20 1.4E-24 159.8 10.9 123 256-390 1-132 (132)
43 PRK00080 ruvB Holliday junctio 99.8 9.1E-18 2E-22 170.1 17.7 189 214-433 20-223 (328)
44 TIGR02881 spore_V_K stage V sp 99.8 3.1E-17 6.8E-22 160.9 18.4 177 218-415 5-202 (261)
45 PF05673 DUF815: Protein of un 99.8 4.6E-17 1E-21 154.6 18.1 180 204-412 12-215 (249)
46 KOG0744 AAA+-type ATPase [Post 99.7 2.8E-18 6E-23 166.1 9.3 179 217-405 140-341 (423)
47 TIGR00635 ruvB Holliday juncti 99.7 3.7E-17 8.1E-22 163.8 17.3 182 217-429 2-198 (305)
48 CHL00181 cbbX CbbX; Provisiona 99.7 4.4E-17 9.5E-22 161.6 16.2 175 219-413 23-218 (287)
49 TIGR02880 cbbX_cfxQ probable R 99.7 5.7E-17 1.2E-21 160.8 15.5 174 218-411 20-215 (284)
50 COG2255 RuvB Holliday junction 99.7 1.9E-16 4.1E-21 151.4 15.9 184 214-428 21-219 (332)
51 PRK07003 DNA polymerase III su 99.7 8.9E-16 1.9E-20 165.4 18.8 156 213-408 10-195 (830)
52 PRK04195 replication factor C 99.7 8.6E-16 1.9E-20 163.4 18.2 162 212-408 7-177 (482)
53 PRK14956 DNA polymerase III su 99.7 8.4E-16 1.8E-20 160.0 17.6 157 212-408 11-197 (484)
54 PRK12323 DNA polymerase III su 99.7 3.6E-16 7.9E-21 166.5 14.8 156 212-407 9-199 (700)
55 PRK14962 DNA polymerase III su 99.7 1.9E-15 4.2E-20 159.1 18.1 154 212-405 7-190 (472)
56 TIGR00763 lon ATP-dependent pr 99.7 1.2E-15 2.6E-20 170.6 17.4 159 220-405 321-506 (775)
57 COG2256 MGS1 ATPase related to 99.7 1.1E-15 2.5E-20 152.5 14.0 151 214-405 19-177 (436)
58 PRK14960 DNA polymerase III su 99.6 2.8E-15 6.1E-20 160.1 17.1 155 213-407 9-193 (702)
59 PRK14961 DNA polymerase III su 99.6 4.8E-15 1E-19 152.1 18.3 156 213-408 10-195 (363)
60 PRK14964 DNA polymerase III su 99.6 6.1E-15 1.3E-19 155.0 17.0 155 213-407 7-191 (491)
61 PRK06645 DNA polymerase III su 99.6 8.6E-15 1.9E-19 154.9 17.7 156 212-407 14-203 (507)
62 PHA02544 44 clamp loader, smal 99.6 1.2E-14 2.5E-19 146.5 17.8 157 206-404 10-173 (316)
63 PRK14958 DNA polymerase III su 99.6 6.3E-15 1.4E-19 156.7 16.2 155 213-407 10-194 (509)
64 PRK07994 DNA polymerase III su 99.6 1E-14 2.2E-19 157.6 18.0 154 214-407 11-194 (647)
65 COG0466 Lon ATP-dependent Lon 99.6 6.7E-15 1.4E-19 155.9 16.0 159 220-405 324-509 (782)
66 COG2607 Predicted ATPase (AAA+ 99.6 2.5E-14 5.4E-19 133.9 17.8 178 205-411 46-246 (287)
67 PLN03025 replication factor C 99.6 1.2E-14 2.6E-19 146.8 16.8 155 212-407 6-174 (319)
68 PRK14949 DNA polymerase III su 99.6 1.4E-14 3.1E-19 158.9 18.3 155 213-407 10-194 (944)
69 KOG2004 Mitochondrial ATP-depe 99.6 1.4E-14 3.1E-19 152.6 17.4 162 220-405 412-597 (906)
70 PRK07940 DNA polymerase III su 99.6 3E-14 6.4E-19 146.9 19.1 177 216-427 2-208 (394)
71 PRK13342 recombination factor 99.6 1.4E-14 3.1E-19 151.2 16.9 153 213-406 6-166 (413)
72 PRK05563 DNA polymerase III su 99.6 2.3E-14 4.9E-19 154.4 18.4 154 214-407 11-194 (559)
73 TIGR02397 dnaX_nterm DNA polym 99.6 3.4E-14 7.4E-19 145.2 19.0 156 213-408 8-193 (355)
74 PRK06893 DNA replication initi 99.6 2.2E-14 4.7E-19 138.1 15.8 165 210-408 7-178 (229)
75 PRK08691 DNA polymerase III su 99.6 1.4E-14 3E-19 156.0 15.9 156 213-408 10-195 (709)
76 PRK14951 DNA polymerase III su 99.6 2.6E-14 5.6E-19 154.1 17.5 155 213-407 10-199 (618)
77 PRK14963 DNA polymerase III su 99.6 4.6E-14 1E-18 149.9 19.0 155 213-407 8-191 (504)
78 PRK05896 DNA polymerase III su 99.6 2.5E-14 5.3E-19 152.7 16.8 155 213-407 10-194 (605)
79 PRK07764 DNA polymerase III su 99.6 3.6E-14 7.7E-19 157.9 18.3 156 212-407 8-195 (824)
80 PRK07133 DNA polymerase III su 99.6 3.5E-14 7.5E-19 154.3 17.4 155 212-406 11-192 (725)
81 PRK14952 DNA polymerase III su 99.6 4.6E-14 1E-18 151.6 18.1 156 213-408 7-194 (584)
82 PRK14957 DNA polymerase III su 99.6 5.5E-14 1.2E-18 149.8 18.1 155 213-407 10-194 (546)
83 PRK14969 DNA polymerase III su 99.6 3E-14 6.4E-19 152.5 15.8 154 214-407 11-194 (527)
84 PRK14970 DNA polymerase III su 99.6 9.6E-14 2.1E-18 142.8 18.9 156 212-407 10-183 (367)
85 TIGR02639 ClpA ATP-dependent C 99.6 3.9E-14 8.4E-19 157.7 16.5 158 214-405 177-359 (731)
86 TIGR03420 DnaA_homol_Hda DnaA 99.6 4E-14 8.6E-19 135.4 14.3 159 212-407 8-175 (226)
87 KOG0735 AAA+-type ATPase [Post 99.6 2.5E-14 5.3E-19 150.6 13.7 192 219-429 408-613 (952)
88 PRK14965 DNA polymerase III su 99.6 4.9E-14 1.1E-18 152.4 16.2 155 213-407 10-194 (576)
89 PRK14959 DNA polymerase III su 99.6 6.3E-14 1.4E-18 150.3 16.8 156 212-407 9-194 (624)
90 PRK06305 DNA polymerase III su 99.6 2E-13 4.3E-18 143.6 20.1 154 213-406 11-195 (451)
91 PRK14953 DNA polymerase III su 99.5 1.6E-13 3.5E-18 145.2 17.4 156 213-408 10-195 (486)
92 PRK08451 DNA polymerase III su 99.5 2.5E-13 5.3E-18 144.1 18.6 155 213-407 8-192 (535)
93 TIGR02902 spore_lonB ATP-depen 99.5 1.1E-13 2.4E-18 148.5 16.0 185 212-433 58-305 (531)
94 TIGR02640 gas_vesic_GvpN gas v 99.5 3.3E-13 7.1E-18 132.5 18.0 145 227-406 6-200 (262)
95 PRK09111 DNA polymerase III su 99.5 2.1E-13 4.4E-18 147.3 17.8 156 212-407 17-207 (598)
96 PRK06647 DNA polymerase III su 99.5 2.3E-13 5E-18 146.3 17.7 155 213-407 10-194 (563)
97 PRK14955 DNA polymerase III su 99.5 1.3E-13 2.8E-18 143.2 15.1 154 213-406 10-201 (397)
98 PRK14954 DNA polymerase III su 99.5 3.1E-13 6.7E-18 146.2 18.1 154 213-406 10-201 (620)
99 PRK08727 hypothetical protein; 99.5 2.8E-13 6.1E-18 130.7 15.9 159 210-406 10-177 (233)
100 PRK08084 DNA replication initi 99.5 2.4E-13 5.3E-18 131.3 15.2 160 211-405 14-181 (235)
101 KOG0989 Replication factor C, 99.5 5E-14 1.1E-18 136.2 10.3 155 212-407 29-204 (346)
102 TIGR02928 orc1/cdc6 family rep 99.5 5.5E-13 1.2E-17 136.9 18.8 159 217-405 13-213 (365)
103 PRK12402 replication factor C 99.5 6.8E-13 1.5E-17 134.5 18.2 155 212-407 8-200 (337)
104 PRK14948 DNA polymerase III su 99.5 5.1E-13 1.1E-17 145.2 18.1 154 212-405 9-194 (620)
105 PRK00149 dnaA chromosomal repl 99.5 2.4E-13 5.2E-18 143.6 14.9 192 211-433 114-323 (450)
106 TIGR00362 DnaA chromosomal rep 99.5 3.9E-13 8.6E-18 140.1 15.9 190 212-433 103-311 (405)
107 PRK08903 DnaA regulatory inact 99.5 4.9E-13 1.1E-17 128.3 15.0 157 210-407 9-173 (227)
108 PRK14950 DNA polymerase III su 99.5 7.5E-13 1.6E-17 143.8 17.8 155 213-407 10-195 (585)
109 KOG0736 Peroxisome assembly fa 99.5 7.2E-13 1.6E-17 140.9 17.0 168 252-433 430-606 (953)
110 PRK14971 DNA polymerase III su 99.5 7.9E-13 1.7E-17 143.6 17.9 156 212-407 10-196 (614)
111 PRK13341 recombination factor 99.5 2.7E-13 5.8E-18 149.2 13.9 152 213-405 22-182 (725)
112 TIGR03345 VI_ClpV1 type VI sec 99.5 7.9E-13 1.7E-17 148.6 17.7 157 214-405 182-364 (852)
113 PRK05342 clpX ATP-dependent pr 99.5 8.1E-13 1.8E-17 137.0 16.0 177 217-402 68-323 (412)
114 PRK10787 DNA-binding ATP-depen 99.5 5.4E-13 1.2E-17 148.5 15.5 158 220-405 323-507 (784)
115 PRK05642 DNA replication initi 99.5 1.8E-12 4E-17 125.1 16.7 162 210-404 10-179 (234)
116 PRK11034 clpA ATP-dependent Cl 99.5 4.7E-13 1E-17 148.0 14.2 154 217-405 184-363 (758)
117 PRK00411 cdc6 cell division co 99.5 2.9E-12 6.3E-17 133.0 18.5 158 217-405 28-221 (394)
118 PRK10865 protein disaggregatio 99.5 4.8E-13 1E-17 150.7 13.5 157 214-405 173-355 (857)
119 PRK14086 dnaA chromosomal repl 99.4 1.1E-12 2.4E-17 140.2 15.1 192 211-434 280-490 (617)
120 PRK11034 clpA ATP-dependent Cl 99.4 1.3E-12 2.9E-17 144.5 16.2 159 220-405 459-667 (758)
121 PF00308 Bac_DnaA: Bacterial d 99.4 1.5E-12 3.2E-17 124.4 14.5 175 214-419 3-194 (219)
122 COG2812 DnaX DNA polymerase II 99.4 8.5E-13 1.8E-17 138.6 13.5 155 214-408 11-195 (515)
123 TIGR00382 clpX endopeptidase C 99.4 3.3E-12 7.2E-17 131.9 17.7 175 220-403 78-330 (413)
124 PRK05564 DNA polymerase III su 99.4 1.2E-11 2.5E-16 124.7 20.6 148 217-404 2-165 (313)
125 PTZ00112 origin recognition co 99.4 4.5E-12 9.8E-17 137.7 18.4 193 219-452 755-988 (1164)
126 PRK00440 rfc replication facto 99.4 5.3E-12 1.1E-16 126.9 17.9 156 212-408 10-178 (319)
127 PRK12422 chromosomal replicati 99.4 2.1E-12 4.6E-17 135.5 15.4 152 254-429 142-310 (445)
128 PRK07471 DNA polymerase III su 99.4 1.5E-11 3.3E-16 125.9 21.3 152 213-404 13-213 (365)
129 PRK14088 dnaA chromosomal repl 99.4 2E-12 4.4E-17 135.7 14.4 190 212-433 98-306 (440)
130 TIGR03346 chaperone_ClpB ATP-d 99.4 2.1E-12 4.6E-17 146.0 15.1 157 214-405 168-350 (852)
131 PRK09112 DNA polymerase III su 99.4 1.3E-11 2.7E-16 125.8 19.2 180 213-433 17-241 (351)
132 cd00009 AAA The AAA+ (ATPases 99.4 5.8E-12 1.3E-16 110.2 12.2 115 253-390 19-151 (151)
133 PRK14087 dnaA chromosomal repl 99.4 8.9E-12 1.9E-16 131.1 15.4 187 215-433 111-320 (450)
134 PRK06620 hypothetical protein; 99.4 1.8E-11 3.9E-16 116.5 15.8 150 212-407 9-163 (214)
135 TIGR02639 ClpA ATP-dependent C 99.4 1.1E-11 2.4E-16 138.1 16.6 155 220-406 455-664 (731)
136 CHL00095 clpC Clp protease ATP 99.4 1.6E-11 3.6E-16 138.4 17.5 152 216-403 176-353 (821)
137 PRK13407 bchI magnesium chelat 99.4 1.7E-11 3.8E-16 123.6 15.9 156 214-405 3-217 (334)
138 TIGR01650 PD_CobS cobaltochela 99.4 4.6E-12 9.9E-17 126.3 11.4 129 253-404 64-233 (327)
139 TIGR02903 spore_lon_C ATP-depe 99.3 1.6E-11 3.5E-16 133.8 16.7 173 213-422 148-384 (615)
140 PHA02244 ATPase-like protein 99.3 1.4E-11 3.1E-16 124.1 14.2 119 254-396 120-266 (383)
141 KOG1969 DNA replication checkp 99.3 4.4E-11 9.6E-16 127.0 18.4 164 211-397 263-474 (877)
142 KOG2028 ATPase related to the 99.3 5.7E-12 1.2E-16 124.2 9.8 150 214-404 133-294 (554)
143 TIGR00678 holB DNA polymerase 99.3 3.2E-11 6.9E-16 112.4 14.5 124 252-403 13-167 (188)
144 PF07728 AAA_5: AAA domain (dy 99.3 2.1E-12 4.5E-17 114.2 5.2 105 255-382 1-139 (139)
145 COG1474 CDC6 Cdc6-related prot 99.3 6.3E-11 1.4E-15 121.2 16.8 198 219-458 17-250 (366)
146 CHL00081 chlI Mg-protoporyphyr 99.3 1.9E-11 4E-16 123.7 12.3 154 216-405 14-233 (350)
147 PRK07952 DNA replication prote 99.3 1.9E-11 4.2E-16 118.2 10.4 129 212-369 65-205 (244)
148 COG0714 MoxR-like ATPases [Gen 99.3 6.6E-11 1.4E-15 120.0 14.8 130 253-405 43-204 (329)
149 COG0464 SpoVK ATPases of the A 99.3 5.7E-11 1.2E-15 127.1 15.0 180 240-433 5-193 (494)
150 PRK05707 DNA polymerase III su 99.3 2.2E-10 4.8E-15 115.8 18.2 124 252-403 21-177 (328)
151 PRK10865 protein disaggregatio 99.3 1.5E-10 3.2E-15 130.8 18.2 162 218-406 567-781 (857)
152 PRK09087 hypothetical protein; 99.3 1.5E-10 3.3E-15 111.1 15.7 161 211-416 13-178 (226)
153 PRK07399 DNA polymerase III su 99.3 2.2E-10 4.7E-15 115.2 17.2 174 217-433 2-222 (314)
154 PRK05201 hslU ATP-dependent pr 99.2 5.5E-11 1.2E-15 121.7 12.8 70 220-289 16-86 (443)
155 PRK08058 DNA polymerase III su 99.2 4E-10 8.6E-15 114.3 18.7 146 217-402 3-180 (329)
156 TIGR00390 hslU ATP-dependent p 99.2 7.1E-11 1.5E-15 120.8 12.7 70 220-289 13-83 (441)
157 TIGR02030 BchI-ChlI magnesium 99.2 3.1E-10 6.8E-15 114.8 17.0 153 217-405 2-220 (337)
158 TIGR03346 chaperone_ClpB ATP-d 99.2 2.6E-10 5.6E-15 129.1 17.5 160 219-405 565-777 (852)
159 TIGR03345 VI_ClpV1 type VI sec 99.2 1.9E-10 4.2E-15 129.5 16.3 156 220-405 567-781 (852)
160 PRK06964 DNA polymerase III su 99.2 7.5E-10 1.6E-14 112.1 18.9 125 251-403 19-203 (342)
161 PRK08116 hypothetical protein; 99.2 1.1E-10 2.5E-15 114.8 12.6 149 216-393 82-251 (268)
162 PRK08181 transposase; Validate 99.2 1.1E-10 2.4E-15 114.5 11.0 64 253-316 106-179 (269)
163 PRK08939 primosomal protein Dn 99.2 8.3E-11 1.8E-15 117.7 10.1 96 216-316 124-229 (306)
164 CHL00095 clpC Clp protease ATP 99.2 4.1E-10 8.8E-15 127.2 16.6 159 219-405 509-733 (821)
165 COG0542 clpA ATP-binding subun 99.2 4.5E-10 9.8E-15 122.6 15.2 159 220-405 492-706 (786)
166 PF13177 DNA_pol3_delta2: DNA 99.1 8.6E-10 1.9E-14 100.4 14.1 112 252-391 18-161 (162)
167 PRK12377 putative replication 99.1 4.3E-10 9.3E-15 109.1 12.1 94 216-316 71-175 (248)
168 COG0470 HolB ATPase involved i 99.1 6.6E-10 1.4E-14 111.8 13.6 117 253-397 24-174 (325)
169 PF07724 AAA_2: AAA domain (Cd 99.1 1.6E-10 3.4E-15 106.1 8.2 108 253-370 3-131 (171)
170 PRK06871 DNA polymerase III su 99.1 4.4E-09 9.6E-14 105.8 18.4 124 252-403 23-178 (325)
171 PRK06526 transposase; Provisio 99.1 1.1E-10 2.5E-15 113.7 6.7 64 253-316 98-171 (254)
172 PRK07993 DNA polymerase III su 99.1 2.9E-09 6.4E-14 107.9 17.1 123 252-402 23-178 (334)
173 TIGR00602 rad24 checkpoint pro 99.1 1.3E-09 2.8E-14 118.3 15.3 202 206-449 73-327 (637)
174 KOG0991 Replication factor C, 99.1 8.6E-10 1.9E-14 103.2 10.7 187 210-450 18-219 (333)
175 TIGR02442 Cob-chelat-sub cobal 99.1 7.3E-10 1.6E-14 121.6 11.5 152 217-404 2-214 (633)
176 smart00382 AAA ATPases associa 99.1 1.1E-09 2.3E-14 94.7 10.3 118 253-391 2-147 (148)
177 PRK13531 regulatory ATPase Rav 99.1 8.7E-10 1.9E-14 115.0 11.3 128 253-403 39-193 (498)
178 PRK11331 5-methylcytosine-spec 99.1 1.7E-09 3.6E-14 112.0 13.3 115 253-390 194-357 (459)
179 PRK06090 DNA polymerase III su 99.1 6.7E-09 1.4E-13 104.2 17.3 123 252-402 24-178 (319)
180 smart00763 AAA_PrkA PrkA AAA d 99.1 3.6E-09 7.7E-14 106.9 15.3 64 216-286 47-118 (361)
181 PRK04132 replication factor C 99.0 2.5E-09 5.5E-14 118.8 14.9 124 256-407 567-705 (846)
182 smart00350 MCM minichromosome 99.0 1.5E-09 3.2E-14 116.3 12.7 128 255-405 238-401 (509)
183 COG0593 DnaA ATPase involved i 99.0 3.6E-09 7.7E-14 108.5 14.8 177 211-419 79-272 (408)
184 PRK08769 DNA polymerase III su 99.0 1E-08 2.2E-13 102.9 17.8 123 252-402 25-183 (319)
185 PF07726 AAA_3: ATPase family 99.0 1.5E-10 3.3E-15 99.7 3.6 106 255-383 1-130 (131)
186 PF01078 Mg_chelatase: Magnesi 99.0 1.2E-09 2.6E-14 102.1 9.6 46 217-277 1-46 (206)
187 PRK06835 DNA replication prote 99.0 2.1E-09 4.6E-14 108.5 10.5 103 254-378 184-303 (329)
188 COG1484 DnaC DNA replication p 99.0 4.4E-09 9.6E-14 102.6 11.3 93 216-316 76-179 (254)
189 PF01695 IstB_IS21: IstB-like 98.9 1E-09 2.2E-14 101.5 5.6 64 253-316 47-120 (178)
190 PRK11608 pspF phage shock prot 98.9 1E-08 2.3E-13 103.8 13.2 154 217-405 4-195 (326)
191 PF06068 TIP49: TIP49 C-termin 98.9 3E-08 6.5E-13 99.5 15.8 65 217-289 22-88 (398)
192 TIGR02031 BchD-ChlD magnesium 98.9 9.7E-09 2.1E-13 111.7 13.0 128 254-404 17-174 (589)
193 COG1219 ClpX ATP-dependent pro 98.9 7.4E-09 1.6E-13 101.1 10.4 93 253-352 97-203 (408)
194 TIGR02974 phageshock_pspF psp 98.9 8.9E-09 1.9E-13 104.4 11.4 149 222-405 2-188 (329)
195 TIGR01817 nifA Nif-specific re 98.9 1.3E-08 2.8E-13 110.0 13.4 155 216-405 193-385 (534)
196 PF00158 Sigma54_activat: Sigm 98.9 7.1E-09 1.5E-13 94.9 9.5 115 221-368 1-143 (168)
197 COG1224 TIP49 DNA helicase TIP 98.9 2.1E-07 4.6E-12 92.3 19.8 64 218-289 38-103 (450)
198 PRK09183 transposase/IS protei 98.9 3.1E-09 6.7E-14 104.1 7.0 64 253-316 102-176 (259)
199 PRK06921 hypothetical protein; 98.9 1.6E-08 3.4E-13 99.5 11.8 63 253-315 117-188 (266)
200 PRK08699 DNA polymerase III su 98.9 1.3E-08 2.7E-13 102.9 10.8 123 251-401 19-182 (325)
201 PF03215 Rad17: Rad17 cell cyc 98.9 4E-08 8.6E-13 104.8 14.8 209 204-451 6-269 (519)
202 PRK11388 DNA-binding transcrip 98.8 3.7E-08 8.1E-13 108.7 15.0 155 216-405 322-511 (638)
203 KOG0741 AAA+-type ATPase [Post 98.8 3.4E-08 7.4E-13 102.0 13.0 137 252-402 537-684 (744)
204 COG0542 clpA ATP-binding subun 98.8 1.3E-08 2.8E-13 111.3 10.1 153 217-403 168-345 (786)
205 KOG1942 DNA helicase, TBP-inte 98.8 7.4E-07 1.6E-11 86.3 18.4 51 219-277 38-88 (456)
206 KOG0745 Putative ATP-dependent 98.7 1.8E-08 4E-13 101.8 7.3 130 253-391 226-386 (564)
207 PF14532 Sigma54_activ_2: Sigm 98.7 3.2E-08 6.9E-13 87.5 8.1 78 223-317 2-82 (138)
208 TIGR02329 propionate_PrpR prop 98.7 7.4E-08 1.6E-12 103.2 12.1 157 215-406 208-403 (526)
209 PRK05818 DNA polymerase III su 98.7 4.5E-07 9.7E-12 87.9 16.2 113 251-391 5-147 (261)
210 COG1239 ChlI Mg-chelatase subu 98.7 9.9E-08 2.1E-12 97.1 11.8 155 216-406 14-234 (423)
211 PRK15424 propionate catabolism 98.7 7.3E-08 1.6E-12 103.2 11.5 90 216-317 216-335 (538)
212 PF12775 AAA_7: P-loop contain 98.7 4.6E-08 1E-12 96.5 9.1 137 253-405 33-194 (272)
213 TIGR00368 Mg chelatase-related 98.7 8.3E-08 1.8E-12 102.1 10.6 142 216-395 189-395 (499)
214 PRK15429 formate hydrogenlyase 98.7 1.6E-07 3.5E-12 104.5 13.3 89 216-316 373-482 (686)
215 PRK10820 DNA-binding transcrip 98.7 1.7E-07 3.7E-12 100.8 12.7 156 215-405 200-393 (520)
216 PRK07276 DNA polymerase III su 98.7 1.8E-06 3.8E-11 85.6 18.7 119 252-401 23-172 (290)
217 PF01637 Arch_ATPase: Archaeal 98.7 2.7E-07 5.9E-12 87.6 12.4 158 253-431 20-233 (234)
218 TIGR03015 pepcterm_ATPase puta 98.7 1.1E-06 2.3E-11 86.3 16.8 155 254-432 44-238 (269)
219 PRK09862 putative ATP-dependen 98.6 1.5E-07 3.2E-12 99.9 10.5 119 253-394 210-391 (506)
220 PRK07132 DNA polymerase III su 98.6 1.5E-06 3.2E-11 86.8 16.9 122 252-402 17-160 (299)
221 PRK05917 DNA polymerase III su 98.6 4.2E-07 9E-12 89.8 12.7 112 252-391 18-154 (290)
222 PF00910 RNA_helicase: RNA hel 98.6 7.3E-08 1.6E-12 81.5 6.3 61 256-316 1-61 (107)
223 PRK05022 anaerobic nitric oxid 98.6 4.6E-07 1E-11 97.3 13.8 154 217-405 185-376 (509)
224 KOG2035 Replication factor C, 98.6 6.8E-07 1.5E-11 86.0 12.9 164 212-416 6-211 (351)
225 PF12774 AAA_6: Hydrolytic ATP 98.6 8.4E-07 1.8E-11 85.3 13.7 133 253-406 32-182 (231)
226 KOG0990 Replication factor C, 98.6 2.4E-07 5.2E-12 90.8 9.8 157 210-407 32-206 (360)
227 PF13173 AAA_14: AAA domain 98.6 2.9E-07 6.3E-12 80.3 9.4 115 254-396 3-127 (128)
228 PTZ00111 DNA replication licen 98.5 3.7E-07 8E-12 101.6 11.0 128 254-404 493-657 (915)
229 TIGR00764 lon_rel lon-related 98.5 7.9E-07 1.7E-11 97.1 13.4 50 216-280 15-64 (608)
230 PHA02624 large T antigen; Prov 98.5 6.2E-07 1.3E-11 95.6 9.9 125 249-390 427-561 (647)
231 PF03969 AFG1_ATPase: AFG1-lik 98.5 3.7E-07 8.1E-12 93.4 7.8 100 249-372 58-172 (362)
232 COG1220 HslU ATP-dependent pro 98.4 2.7E-06 5.8E-11 84.0 13.0 69 220-288 16-85 (444)
233 COG1221 PspF Transcriptional r 98.4 6.4E-07 1.4E-11 91.8 9.1 158 216-406 75-266 (403)
234 KOG1051 Chaperone HSP104 and r 98.4 8.1E-06 1.8E-10 90.9 18.0 122 220-368 563-710 (898)
235 KOG1514 Origin recognition com 98.4 9.4E-06 2E-10 87.0 17.1 170 254-456 423-631 (767)
236 PF13401 AAA_22: AAA domain; P 98.4 1E-06 2.2E-11 76.5 8.0 38 253-290 4-49 (131)
237 COG0606 Predicted ATPase with 98.4 2.7E-07 5.8E-12 95.3 4.9 48 215-277 175-222 (490)
238 COG3829 RocR Transcriptional r 98.4 2.2E-06 4.9E-11 89.7 10.8 157 213-405 239-435 (560)
239 PRK10923 glnG nitrogen regulat 98.4 3.3E-06 7.1E-11 89.8 12.4 154 217-405 136-327 (469)
240 TIGR02915 PEP_resp_reg putativ 98.4 2.9E-06 6.3E-11 89.6 11.9 153 217-405 137-328 (445)
241 KOG1970 Checkpoint RAD17-RFC c 98.4 1.3E-05 2.8E-10 83.8 16.0 208 205-449 70-319 (634)
242 PF05729 NACHT: NACHT domain 98.3 4.3E-06 9.3E-11 75.1 10.6 133 254-405 1-164 (166)
243 PRK11361 acetoacetate metaboli 98.3 3.7E-06 8.1E-11 89.0 11.6 152 218-405 142-332 (457)
244 KOG2227 Pre-initiation complex 98.3 9E-06 2E-10 83.6 13.5 159 218-407 149-341 (529)
245 TIGR01818 ntrC nitrogen regula 98.3 5.1E-06 1.1E-10 88.1 12.3 152 219-405 134-323 (463)
246 KOG0478 DNA replication licens 98.3 7E-06 1.5E-10 87.5 12.4 161 220-405 430-627 (804)
247 PRK13406 bchD magnesium chelat 98.3 9.4E-06 2E-10 88.0 13.4 119 254-395 26-173 (584)
248 PHA02774 E1; Provisional 98.2 1.1E-05 2.3E-10 86.0 12.1 58 249-313 430-488 (613)
249 KOG1968 Replication factor C, 98.2 6.9E-06 1.5E-10 92.0 10.9 182 213-420 314-519 (871)
250 PF05621 TniB: Bacterial TniB 98.2 1.8E-05 4E-10 78.1 12.6 178 229-433 43-262 (302)
251 PLN03210 Resistant to P. syrin 98.2 4.6E-05 9.9E-10 89.8 17.8 154 210-406 175-366 (1153)
252 PF00931 NB-ARC: NB-ARC domain 98.2 4.3E-05 9.4E-10 75.5 14.9 144 253-427 19-197 (287)
253 PRK13765 ATP-dependent proteas 98.2 1.3E-05 2.9E-10 87.5 11.8 50 214-278 26-75 (637)
254 PHA00729 NTP-binding motif con 98.1 2.9E-06 6.4E-11 80.7 5.4 62 254-315 18-93 (226)
255 PRK15115 response regulator Gl 98.1 1.3E-05 2.8E-10 84.7 10.8 64 253-317 157-241 (444)
256 COG2204 AtoC Response regulato 98.1 2.9E-05 6.3E-10 81.2 11.5 153 217-405 139-330 (464)
257 PF00493 MCM: MCM2/3/5 family 98.0 3.8E-06 8.3E-11 85.3 4.2 130 254-406 58-223 (331)
258 TIGR02688 conserved hypothetic 98.0 5.6E-05 1.2E-09 78.0 12.4 63 253-316 209-272 (449)
259 PF05707 Zot: Zonular occluden 98.0 2.5E-05 5.4E-10 73.1 8.8 114 256-391 3-146 (193)
260 cd01120 RecA-like_NTPases RecA 98.0 4.3E-05 9.3E-10 68.1 9.6 31 256-286 2-35 (165)
261 KOG2170 ATPase of the AAA+ sup 97.9 3.8E-05 8.3E-10 75.0 9.2 92 220-317 83-191 (344)
262 TIGR01618 phage_P_loop phage n 97.9 1.4E-05 3E-10 76.2 5.8 23 253-275 12-34 (220)
263 PF13207 AAA_17: AAA domain; P 97.9 6.8E-06 1.5E-10 70.4 3.4 31 256-286 2-32 (121)
264 TIGR02237 recomb_radB DNA repa 97.9 4.5E-05 9.8E-10 72.0 9.1 40 249-288 8-50 (209)
265 PRK15455 PrkA family serine pr 97.9 1.5E-05 3.3E-10 84.8 6.1 67 213-286 70-137 (644)
266 PRK06581 DNA polymerase III su 97.9 0.00022 4.7E-09 68.3 13.0 125 253-405 15-162 (263)
267 COG5271 MDN1 AAA ATPase contai 97.9 8.9E-05 1.9E-09 85.4 11.7 129 253-405 1543-1704(4600)
268 PRK10365 transcriptional regul 97.9 6.7E-05 1.4E-09 79.0 10.3 64 253-317 162-246 (441)
269 COG1485 Predicted ATPase [Gene 97.9 4.2E-05 9E-10 76.5 8.1 98 251-372 63-175 (367)
270 PRK00131 aroK shikimate kinase 97.9 1.7E-05 3.6E-10 72.2 4.8 35 251-285 2-36 (175)
271 PF10443 RNA12: RNA12 protein; 97.8 0.00066 1.4E-08 70.0 16.3 88 360-449 185-298 (431)
272 PRK07261 topology modulation p 97.8 8.5E-05 1.8E-09 68.2 8.6 100 256-405 3-102 (171)
273 PRK08118 topology modulation p 97.8 4.1E-05 9E-10 70.0 6.4 32 255-286 3-34 (167)
274 KOG0480 DNA replication licens 97.8 4.4E-05 9.5E-10 81.0 7.2 163 218-406 344-544 (764)
275 COG1618 Predicted nucleotide k 97.8 0.00013 2.8E-09 65.3 9.0 25 253-277 5-29 (179)
276 COG5245 DYN1 Dynein, heavy cha 97.8 0.00011 2.4E-09 84.0 10.5 138 252-405 1493-1659(3164)
277 PRK14722 flhF flagellar biosyn 97.7 0.0001 2.3E-09 75.6 8.7 102 253-375 137-265 (374)
278 cd01124 KaiC KaiC is a circadi 97.7 0.00021 4.5E-09 65.9 10.1 30 256-285 2-34 (187)
279 PF13604 AAA_30: AAA domain; P 97.7 0.00039 8.4E-09 65.3 11.6 90 254-368 19-132 (196)
280 PF14516 AAA_35: AAA-like doma 97.7 0.00063 1.4E-08 69.2 13.8 37 253-289 31-70 (331)
281 PF06309 Torsin: Torsin; Inte 97.7 6.2E-05 1.3E-09 65.0 5.4 52 220-277 26-77 (127)
282 cd01394 radB RadB. The archaea 97.7 0.00024 5.2E-09 67.5 10.2 38 249-286 15-55 (218)
283 PRK14737 gmk guanylate kinase; 97.7 0.00016 3.5E-09 67.3 8.7 168 252-453 3-185 (186)
284 KOG2680 DNA helicase TIP49, TB 97.7 0.00063 1.4E-08 66.6 12.8 57 360-419 318-386 (454)
285 PF03266 NTPase_1: NTPase; In 97.7 9.5E-05 2.1E-09 67.7 6.8 23 255-277 1-23 (168)
286 COG3604 FhlA Transcriptional r 97.7 0.0002 4.3E-09 74.5 9.7 89 216-316 220-329 (550)
287 COG1241 MCM2 Predicted ATPase 97.7 6.9E-05 1.5E-09 81.8 6.4 125 255-402 321-481 (682)
288 PRK13947 shikimate kinase; Pro 97.6 5.1E-05 1.1E-09 69.2 4.4 32 255-286 3-34 (171)
289 cd03281 ABC_MSH5_euk MutS5 hom 97.6 0.00024 5.2E-09 67.6 8.8 21 254-274 30-50 (213)
290 PRK06067 flagellar accessory p 97.6 0.00034 7.3E-09 67.4 9.8 38 249-286 21-61 (234)
291 cd00464 SK Shikimate kinase (S 97.6 5.9E-05 1.3E-09 67.3 4.1 31 255-285 1-31 (154)
292 PF05272 VirE: Virulence-assoc 97.6 0.00026 5.7E-09 66.5 8.5 113 249-390 48-169 (198)
293 PRK09361 radB DNA repair and r 97.6 0.00025 5.3E-09 67.8 8.5 39 249-287 19-60 (225)
294 PRK12723 flagellar biosynthesi 97.6 0.00087 1.9E-08 69.3 12.9 65 252-316 173-266 (388)
295 PRK03839 putative kinase; Prov 97.6 6.1E-05 1.3E-09 69.5 4.0 30 256-285 3-32 (180)
296 PRK05800 cobU adenosylcobinami 97.6 0.00019 4.2E-09 65.8 7.3 63 255-317 3-89 (170)
297 PF13671 AAA_33: AAA domain; P 97.6 4.5E-05 9.7E-10 67.1 3.0 30 256-285 2-31 (143)
298 COG0563 Adk Adenylate kinase a 97.6 0.00019 4.2E-09 66.3 7.2 29 255-283 2-30 (178)
299 COG0703 AroK Shikimate kinase 97.6 5.7E-05 1.2E-09 68.8 3.6 33 254-286 3-35 (172)
300 PRK00625 shikimate kinase; Pro 97.6 7E-05 1.5E-09 68.9 4.2 32 255-286 2-33 (173)
301 PRK13949 shikimate kinase; Pro 97.6 7.2E-05 1.6E-09 68.5 4.2 32 255-286 3-34 (169)
302 COG1373 Predicted ATPase (AAA+ 97.5 0.0012 2.6E-08 68.8 13.5 116 255-398 39-161 (398)
303 PF08740 BCS1_N: BCS1 N termin 97.5 0.0062 1.3E-07 56.5 16.8 138 63-221 27-187 (187)
304 PRK13948 shikimate kinase; Pro 97.5 0.00011 2.4E-09 68.1 4.9 35 251-285 8-42 (182)
305 PRK05973 replicative DNA helic 97.5 0.00049 1.1E-08 66.4 9.4 38 249-286 60-100 (237)
306 COG3283 TyrR Transcriptional r 97.5 0.00078 1.7E-08 67.5 10.6 132 206-369 191-344 (511)
307 PF06431 Polyoma_lg_T_C: Polyo 97.5 0.0008 1.7E-08 67.7 10.7 125 249-390 151-285 (417)
308 cd03283 ABC_MutS-like MutS-lik 97.5 0.00044 9.5E-09 65.1 8.5 63 253-315 25-116 (199)
309 PRK00771 signal recognition pa 97.5 0.0011 2.3E-08 69.7 12.1 62 226-288 69-133 (437)
310 PRK08533 flagellar accessory p 97.5 0.00063 1.4E-08 65.5 9.6 37 249-285 20-59 (230)
311 TIGR02012 tigrfam_recA protein 97.4 0.00065 1.4E-08 68.4 9.7 70 249-318 51-147 (321)
312 PF13191 AAA_16: AAA ATPase do 97.4 6.3E-05 1.4E-09 69.0 2.0 37 253-289 24-63 (185)
313 PRK06217 hypothetical protein; 97.4 0.00014 3E-09 67.4 4.3 32 255-286 3-34 (183)
314 PRK04040 adenylate kinase; Pro 97.4 0.0012 2.6E-08 61.6 10.6 30 253-282 2-33 (188)
315 PF00437 T2SE: Type II/IV secr 97.4 0.00037 8.1E-09 68.5 7.5 90 214-314 99-207 (270)
316 PRK08154 anaerobic benzoate ca 97.4 0.00033 7.1E-09 70.5 7.1 57 224-285 109-165 (309)
317 COG1116 TauB ABC-type nitrate/ 97.4 0.00066 1.4E-08 65.2 8.7 23 255-277 31-53 (248)
318 cd02021 GntK Gluconate kinase 97.4 0.00016 3.4E-09 64.5 4.1 30 256-285 2-31 (150)
319 PRK13946 shikimate kinase; Pro 97.4 0.00016 3.4E-09 67.2 4.2 34 253-286 10-43 (184)
320 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00017 3.7E-09 66.5 4.3 29 256-284 2-30 (183)
321 TIGR01313 therm_gnt_kin carboh 97.4 0.00016 3.4E-09 65.5 4.0 29 256-284 1-29 (163)
322 PRK14532 adenylate kinase; Pro 97.4 0.00018 3.9E-09 66.7 4.4 30 255-284 2-31 (188)
323 cd02020 CMPK Cytidine monophos 97.4 0.00017 3.6E-09 63.6 3.9 30 256-285 2-31 (147)
324 PRK05057 aroK shikimate kinase 97.4 0.00021 4.6E-09 65.6 4.6 34 253-286 4-37 (172)
325 cd01121 Sms Sms (bacterial rad 97.4 0.0007 1.5E-08 69.8 8.9 69 249-317 78-171 (372)
326 TIGR03499 FlhF flagellar biosy 97.4 0.00079 1.7E-08 66.9 8.9 61 253-313 194-281 (282)
327 COG4619 ABC-type uncharacteriz 97.4 0.00081 1.8E-08 60.8 8.0 24 254-277 30-53 (223)
328 PRK14531 adenylate kinase; Pro 97.4 0.00021 4.6E-09 66.2 4.5 31 254-284 3-33 (183)
329 cd00983 recA RecA is a bacter 97.3 0.0009 2E-08 67.5 9.3 70 249-318 51-147 (325)
330 PRK11823 DNA repair protein Ra 97.3 0.00076 1.7E-08 71.3 9.2 70 249-318 76-170 (446)
331 KOG2228 Origin recognition com 97.3 0.0014 3E-08 65.3 10.2 156 220-407 25-222 (408)
332 smart00072 GuKc Guanylate kina 97.3 0.0011 2.3E-08 61.6 9.0 24 254-277 3-26 (184)
333 cd01393 recA_like RecA is a b 97.3 0.00073 1.6E-08 64.5 8.1 40 249-288 15-63 (226)
334 PRK04841 transcriptional regul 97.3 0.006 1.3E-07 70.1 16.8 150 253-432 32-225 (903)
335 KOG3347 Predicted nucleotide k 97.3 0.00022 4.8E-09 62.9 3.8 43 253-297 7-49 (176)
336 TIGR00150 HI0065_YjeE ATPase, 97.3 0.0013 2.9E-08 57.6 8.7 28 253-280 22-49 (133)
337 PRK05703 flhF flagellar biosyn 97.3 0.0035 7.7E-08 65.8 13.5 63 253-315 221-310 (424)
338 PTZ00202 tuzin; Provisional 97.3 0.017 3.8E-07 60.1 17.9 76 214-301 257-332 (550)
339 cd01428 ADK Adenylate kinase ( 97.3 0.00025 5.4E-09 65.8 4.3 30 256-285 2-31 (194)
340 PRK03731 aroL shikimate kinase 97.3 0.00028 6E-09 64.4 4.4 33 254-286 3-35 (171)
341 COG1102 Cmk Cytidylate kinase 97.2 0.00025 5.4E-09 63.5 3.5 28 256-283 3-30 (179)
342 PF06745 KaiC: KaiC; InterPro 97.2 0.0015 3.2E-08 62.5 9.2 37 249-285 15-55 (226)
343 cd00544 CobU Adenosylcobinamid 97.2 0.0013 2.8E-08 60.3 8.3 63 256-318 2-87 (169)
344 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.00083 1.8E-08 60.4 7.0 26 253-278 25-50 (157)
345 PRK11889 flhF flagellar biosyn 97.2 0.0042 9.2E-08 64.0 12.7 58 225-286 217-277 (436)
346 PF04665 Pox_A32: Poxvirus A32 97.2 0.0077 1.7E-07 58.2 13.8 125 253-405 13-171 (241)
347 PF00448 SRP54: SRP54-type pro 97.2 0.0014 3E-08 61.6 8.5 25 253-277 1-25 (196)
348 PRK06547 hypothetical protein; 97.2 0.00048 1E-08 63.3 5.3 33 253-285 15-47 (172)
349 TIGR02858 spore_III_AA stage I 97.2 0.0016 3.4E-08 64.2 9.2 25 254-278 112-136 (270)
350 PLN02674 adenylate kinase 97.2 0.0014 3.1E-08 63.5 8.7 31 253-283 31-61 (244)
351 PRK06762 hypothetical protein; 97.2 0.00032 7E-09 63.6 4.0 34 253-286 2-35 (166)
352 PRK14530 adenylate kinase; Pro 97.2 0.00036 7.8E-09 66.3 4.5 31 254-284 4-34 (215)
353 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.0012 2.5E-08 64.9 8.0 39 249-287 32-73 (259)
354 KOG2383 Predicted ATPase [Gene 97.2 0.0014 3E-08 66.7 8.5 26 252-277 113-138 (467)
355 KOG1051 Chaperone HSP104 and r 97.2 0.0018 4E-08 72.6 10.4 126 253-400 208-359 (898)
356 cd03216 ABC_Carb_Monos_I This 97.2 0.00081 1.8E-08 61.1 6.4 26 252-277 25-50 (163)
357 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0014 3E-08 60.6 7.8 65 253-317 25-102 (177)
358 PF13086 AAA_11: AAA domain; P 97.2 0.00036 7.9E-09 66.0 4.1 22 256-277 20-41 (236)
359 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.00089 1.9E-08 67.6 6.9 66 217-289 58-125 (358)
360 PRK08233 hypothetical protein; 97.2 0.0018 3.8E-08 59.4 8.5 34 254-287 4-38 (182)
361 PRK09376 rho transcription ter 97.2 0.002 4.3E-08 66.2 9.5 23 256-278 172-194 (416)
362 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0016 3.4E-08 58.0 7.8 62 253-317 26-101 (144)
363 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0022 4.7E-08 62.0 9.4 37 249-285 17-56 (237)
364 cd03243 ABC_MutS_homologs The 97.2 0.002 4.4E-08 60.6 8.9 63 254-316 30-120 (202)
365 COG1855 ATPase (PilT family) [ 97.1 0.00041 8.9E-09 71.2 4.3 44 216-277 244-287 (604)
366 cd00227 CPT Chloramphenicol (C 97.1 0.00039 8.5E-09 63.9 3.9 34 253-286 2-35 (175)
367 PRK04296 thymidine kinase; Pro 97.1 0.0027 5.8E-08 59.3 9.5 30 255-284 4-36 (190)
368 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0025 5.5E-08 62.7 9.8 85 216-314 57-159 (264)
369 TIGR03263 guanyl_kin guanylate 97.1 0.0021 4.5E-08 59.0 8.6 25 255-279 3-27 (180)
370 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0015 3.2E-08 62.7 7.9 53 249-301 15-76 (235)
371 PRK14528 adenylate kinase; Pro 97.1 0.00049 1.1E-08 64.0 4.3 30 255-284 3-32 (186)
372 PF13479 AAA_24: AAA domain 97.1 0.0012 2.5E-08 62.8 6.8 60 254-316 4-80 (213)
373 PRK02496 adk adenylate kinase; 97.1 0.00046 9.9E-09 63.8 3.9 29 256-284 4-32 (184)
374 PF13245 AAA_19: Part of AAA d 97.1 0.00075 1.6E-08 53.3 4.5 33 255-287 12-51 (76)
375 PRK13808 adenylate kinase; Pro 97.1 0.0021 4.6E-08 64.9 8.9 29 256-284 3-31 (333)
376 cd03287 ABC_MSH3_euk MutS3 hom 97.1 0.0028 6.1E-08 60.7 9.3 63 253-315 31-121 (222)
377 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.002 4.3E-08 60.5 8.2 21 254-274 29-49 (200)
378 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00046 9.9E-09 63.6 3.7 30 255-284 5-34 (188)
379 COG4133 CcmA ABC-type transpor 97.1 0.0029 6.2E-08 58.3 8.6 25 253-277 28-52 (209)
380 PF00519 PPV_E1_C: Papillomavi 97.1 0.00083 1.8E-08 68.3 5.6 113 249-391 258-383 (432)
381 PLN02199 shikimate kinase 97.1 0.0011 2.4E-08 65.6 6.4 34 253-286 102-135 (303)
382 PRK00300 gmk guanylate kinase; 97.0 0.007 1.5E-07 56.8 11.5 27 252-278 4-30 (205)
383 PTZ00088 adenylate kinase 1; P 97.0 0.00061 1.3E-08 65.6 4.3 31 255-285 8-38 (229)
384 PLN02200 adenylate kinase fami 97.0 0.00073 1.6E-08 65.3 4.7 30 253-282 43-72 (234)
385 PRK00409 recombination and DNA 97.0 0.0028 6E-08 71.5 9.9 63 253-315 327-418 (782)
386 TIGR01351 adk adenylate kinase 97.0 0.00065 1.4E-08 64.3 4.1 29 256-284 2-30 (210)
387 TIGR01069 mutS2 MutS2 family p 97.0 0.0027 5.8E-08 71.5 9.6 23 254-276 323-345 (771)
388 PRK00279 adk adenylate kinase; 97.0 0.00076 1.6E-08 64.1 4.3 29 256-284 3-31 (215)
389 cd03228 ABCC_MRP_Like The MRP 97.0 0.0026 5.6E-08 58.1 7.7 26 252-277 27-52 (171)
390 PRK06696 uridine kinase; Valid 97.0 0.0022 4.8E-08 61.3 7.5 38 253-290 22-62 (223)
391 cd02019 NK Nucleoside/nucleoti 97.0 0.001 2.2E-08 51.4 4.1 22 256-277 2-23 (69)
392 PRK13695 putative NTPase; Prov 96.9 0.0063 1.4E-07 55.7 10.0 23 255-277 2-24 (174)
393 PRK04182 cytidylate kinase; Pr 96.9 0.0008 1.7E-08 61.5 3.9 30 255-284 2-31 (180)
394 COG1936 Predicted nucleotide k 96.9 0.00071 1.5E-08 61.4 3.4 30 255-285 2-31 (180)
395 smart00534 MUTSac ATPase domai 96.9 0.0028 6E-08 58.9 7.5 61 256-316 2-90 (185)
396 PRK14527 adenylate kinase; Pro 96.9 0.00078 1.7E-08 62.8 3.8 32 253-284 6-37 (191)
397 PF10236 DAP3: Mitochondrial r 96.9 0.036 7.9E-07 55.8 16.1 99 305-407 157-280 (309)
398 PRK09354 recA recombinase A; P 96.9 0.0038 8.2E-08 63.5 9.0 70 249-318 56-152 (349)
399 cd03282 ABC_MSH4_euk MutS4 hom 96.9 0.0035 7.5E-08 59.3 8.2 22 254-275 30-51 (204)
400 TIGR02173 cyt_kin_arch cytidyl 96.9 0.00083 1.8E-08 60.9 3.7 30 256-285 3-32 (171)
401 TIGR02525 plasmid_TraJ plasmid 96.9 0.0045 9.7E-08 63.8 9.4 24 254-277 150-173 (372)
402 cd03246 ABCC_Protease_Secretio 96.9 0.0038 8.2E-08 57.2 8.0 25 253-277 28-52 (173)
403 PRK01184 hypothetical protein; 96.9 0.00094 2E-08 61.7 4.0 29 255-284 3-31 (184)
404 COG3267 ExeA Type II secretory 96.9 0.024 5.1E-07 54.8 13.5 126 255-406 53-215 (269)
405 cd03247 ABCC_cytochrome_bd The 96.9 0.0045 9.8E-08 56.9 8.4 25 253-277 28-52 (178)
406 PF13238 AAA_18: AAA domain; P 96.9 0.00067 1.5E-08 58.1 2.7 22 256-277 1-22 (129)
407 PLN02459 probable adenylate ki 96.9 0.0035 7.6E-08 61.2 7.8 30 255-284 31-60 (261)
408 PF07693 KAP_NTPase: KAP famil 96.9 0.01 2.3E-07 59.7 11.7 28 251-278 18-45 (325)
409 TIGR00416 sms DNA repair prote 96.9 0.0057 1.2E-07 64.8 10.0 69 249-317 90-183 (454)
410 COG0529 CysC Adenylylsulfate k 96.8 0.0028 6.1E-08 57.7 6.5 37 253-289 23-62 (197)
411 COG2874 FlaH Predicted ATPases 96.8 0.0042 9.2E-08 58.3 7.8 121 249-390 24-190 (235)
412 KOG0477 DNA replication licens 96.8 0.00099 2.2E-08 70.8 4.0 63 255-317 484-559 (854)
413 PRK10416 signal recognition pa 96.8 0.015 3.2E-07 58.8 12.3 34 253-286 114-150 (318)
414 PF08433 KTI12: Chromatin asso 96.8 0.0019 4E-08 63.7 5.7 61 256-316 4-82 (270)
415 PF02367 UPF0079: Uncharacteri 96.8 0.0015 3.3E-08 56.4 4.5 64 253-316 15-100 (123)
416 KOG2543 Origin recognition com 96.8 0.0069 1.5E-07 61.4 9.6 127 252-402 29-191 (438)
417 cd03284 ABC_MutS1 MutS1 homolo 96.8 0.0041 8.9E-08 59.3 7.8 22 254-275 31-52 (216)
418 cd00046 DEXDc DEAD-like helica 96.8 0.0021 4.5E-08 54.9 5.2 24 254-277 1-24 (144)
419 TIGR01613 primase_Cterm phage/ 96.8 0.0061 1.3E-07 61.2 9.3 62 251-315 74-139 (304)
420 PF13521 AAA_28: AAA domain; P 96.8 0.00094 2E-08 60.5 3.1 26 256-282 2-27 (163)
421 PRK10078 ribose 1,5-bisphospho 96.8 0.0015 3.2E-08 60.7 4.4 32 254-285 3-34 (186)
422 PRK04328 hypothetical protein; 96.8 0.0075 1.6E-07 58.8 9.5 40 249-288 19-61 (249)
423 cd01128 rho_factor Transcripti 96.8 0.0058 1.3E-07 59.6 8.6 27 253-279 16-42 (249)
424 PHA02530 pseT polynucleotide k 96.8 0.0013 2.9E-08 65.6 4.3 31 254-284 3-34 (300)
425 PF00406 ADK: Adenylate kinase 96.8 0.00098 2.1E-08 59.6 3.0 27 258-284 1-27 (151)
426 TIGR00767 rho transcription te 96.8 0.0041 9E-08 64.1 7.8 25 254-278 169-193 (415)
427 COG5271 MDN1 AAA ATPase contai 96.8 0.012 2.6E-07 68.9 11.8 130 255-405 890-1048(4600)
428 PRK14526 adenylate kinase; Pro 96.7 0.0015 3.2E-08 62.1 4.2 28 256-283 3-30 (211)
429 COG4650 RtcR Sigma54-dependent 96.7 0.0035 7.5E-08 61.3 6.6 65 253-317 208-295 (531)
430 PHA00350 putative assembly pro 96.7 0.0048 1E-07 63.8 8.1 120 255-384 3-158 (399)
431 KOG0482 DNA replication licens 96.7 0.0024 5.2E-08 66.6 5.8 169 220-405 343-540 (721)
432 cd02027 APSK Adenosine 5'-phos 96.7 0.0015 3.2E-08 58.5 3.8 30 256-285 2-34 (149)
433 PF01745 IPT: Isopentenyl tran 96.7 0.0014 3.1E-08 61.5 3.7 35 255-289 3-37 (233)
434 PF00625 Guanylate_kin: Guanyl 96.7 0.0016 3.6E-08 60.1 4.2 28 253-280 2-29 (183)
435 KOG3354 Gluconate kinase [Carb 96.7 0.0014 3.1E-08 58.2 3.5 44 251-296 10-53 (191)
436 TIGR01448 recD_rel helicase, p 96.7 0.011 2.4E-07 66.3 11.4 63 254-316 339-428 (720)
437 COG4088 Predicted nucleotide k 96.7 0.002 4.3E-08 60.1 4.4 23 255-277 3-25 (261)
438 cd03238 ABC_UvrA The excision 96.7 0.01 2.2E-07 54.8 9.1 24 252-275 20-43 (176)
439 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0089 1.9E-07 54.7 8.7 25 253-277 26-50 (173)
440 COG4178 ABC-type uncharacteriz 96.7 0.0041 8.9E-08 67.2 7.3 28 250-277 416-443 (604)
441 PRK10646 ADP-binding protein; 96.7 0.011 2.4E-07 53.1 8.8 27 253-279 28-54 (153)
442 TIGR02655 circ_KaiC circadian 96.6 0.0067 1.4E-07 65.0 8.8 29 249-277 259-287 (484)
443 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0016 3.5E-08 63.3 3.7 32 256-287 2-36 (249)
444 TIGR02782 TrbB_P P-type conjug 96.6 0.0023 5E-08 64.1 4.9 25 253-277 132-156 (299)
445 PRK12724 flagellar biosynthesi 96.6 0.03 6.4E-07 58.4 13.1 36 253-288 223-262 (432)
446 COG3854 SpoIIIAA ncharacterize 96.6 0.0048 1E-07 58.5 6.6 24 254-277 138-161 (308)
447 COG3378 Phage associated DNA p 96.6 0.0078 1.7E-07 64.2 9.0 65 251-315 228-293 (517)
448 PRK04301 radA DNA repair and r 96.6 0.0063 1.4E-07 61.5 8.0 53 249-301 98-159 (317)
449 COG2274 SunT ABC-type bacterio 96.6 0.0085 1.8E-07 66.7 9.5 28 250-277 496-523 (709)
450 PF00488 MutS_V: MutS domain V 96.6 0.011 2.5E-07 57.0 9.3 97 254-371 44-168 (235)
451 cd03286 ABC_MSH6_euk MutS6 hom 96.6 0.0086 1.9E-07 57.2 8.3 63 253-315 30-120 (218)
452 PF05970 PIF1: PIF1-like helic 96.6 0.0072 1.6E-07 62.3 8.4 27 253-279 22-48 (364)
453 PRK13546 teichoic acids export 96.6 0.011 2.4E-07 58.1 9.3 25 253-277 50-74 (264)
454 PRK12727 flagellar biosynthesi 96.6 0.013 2.9E-07 62.5 10.3 64 252-315 349-439 (559)
455 cd01130 VirB11-like_ATPase Typ 96.6 0.002 4.3E-08 59.9 3.7 26 253-278 25-50 (186)
456 PRK14529 adenylate kinase; Pro 96.6 0.0022 4.8E-08 61.4 4.1 28 255-282 2-29 (223)
457 cd02022 DPCK Dephospho-coenzym 96.6 0.0025 5.3E-08 58.9 4.2 30 256-286 2-31 (179)
458 PF12780 AAA_8: P-loop contain 96.6 0.013 2.9E-07 57.6 9.6 62 253-314 31-99 (268)
459 PRK00889 adenylylsulfate kinas 96.6 0.0029 6.3E-08 57.9 4.6 34 253-286 4-40 (175)
460 PRK12608 transcription termina 96.6 0.01 2.2E-07 60.9 8.9 23 255-277 135-157 (380)
461 PRK11176 lipid transporter ATP 96.5 0.011 2.3E-07 64.7 9.9 27 251-277 367-393 (582)
462 PRK14021 bifunctional shikimat 96.5 0.0024 5.3E-08 69.2 4.7 32 255-286 8-39 (542)
463 smart00487 DEXDc DEAD-like hel 96.5 0.0071 1.5E-07 55.0 7.1 24 254-277 25-49 (201)
464 PRK12339 2-phosphoglycerate ki 96.5 0.0028 6E-08 59.6 4.4 29 253-281 3-31 (197)
465 COG2909 MalT ATP-dependent tra 96.5 0.13 2.8E-06 57.3 17.5 65 206-286 6-72 (894)
466 TIGR02768 TraA_Ti Ti-type conj 96.5 0.0083 1.8E-07 67.5 8.6 63 254-316 369-451 (744)
467 cd03214 ABC_Iron-Siderophores_ 96.5 0.01 2.2E-07 54.7 7.8 25 253-277 25-49 (180)
468 PRK13900 type IV secretion sys 96.5 0.009 1.9E-07 60.7 8.1 26 253-278 160-185 (332)
469 cd03227 ABC_Class2 ABC-type Cl 96.5 0.0096 2.1E-07 53.9 7.5 24 254-277 22-45 (162)
470 PF09848 DUF2075: Uncharacteri 96.5 0.0083 1.8E-07 61.5 7.9 24 254-277 2-25 (352)
471 PRK13889 conjugal transfer rel 96.5 0.0089 1.9E-07 68.6 8.8 89 255-368 364-472 (988)
472 TIGR02655 circ_KaiC circadian 96.5 0.011 2.3E-07 63.4 9.0 49 249-299 17-69 (484)
473 TIGR02238 recomb_DMC1 meiotic 96.5 0.0082 1.8E-07 60.5 7.6 53 249-301 92-153 (313)
474 COG0467 RAD55 RecA-superfamily 96.5 0.0033 7.2E-08 61.5 4.7 40 249-288 19-61 (260)
475 PRK09302 circadian clock prote 96.5 0.019 4E-07 62.0 10.8 119 249-388 27-199 (509)
476 TIGR02788 VirB11 P-type DNA tr 96.4 0.0081 1.8E-07 60.4 7.5 26 252-277 143-168 (308)
477 PRK13764 ATPase; Provisional 96.4 0.0031 6.8E-08 68.5 4.7 26 253-278 257-282 (602)
478 PRK13657 cyclic beta-1,2-gluca 96.4 0.01 2.2E-07 65.1 8.8 27 251-277 359-385 (588)
479 COG0194 Gmk Guanylate kinase [ 96.4 0.031 6.7E-07 51.5 10.3 66 384-453 116-183 (191)
480 PRK05541 adenylylsulfate kinas 96.4 0.003 6.6E-08 57.9 3.7 26 253-278 7-32 (176)
481 PRK12726 flagellar biosynthesi 96.4 0.023 5.1E-07 58.3 10.4 37 253-289 206-245 (407)
482 PRK12338 hypothetical protein; 96.4 0.0033 7.1E-08 63.2 4.2 30 253-282 4-33 (319)
483 PF01583 APS_kinase: Adenylyls 96.4 0.0029 6.2E-08 57.1 3.4 37 254-290 3-42 (156)
484 PRK09825 idnK D-gluconate kina 96.4 0.0034 7.3E-08 57.9 3.9 29 254-282 4-32 (176)
485 TIGR02322 phosphon_PhnN phosph 96.4 0.0028 6.1E-08 58.1 3.4 25 255-279 3-27 (179)
486 COG1119 ModF ABC-type molybden 96.4 0.016 3.6E-07 55.5 8.5 27 251-277 55-81 (257)
487 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.017 3.7E-07 52.3 8.2 29 255-283 4-35 (159)
488 PRK11174 cysteine/glutathione 96.4 0.013 2.8E-07 64.3 9.1 28 250-277 373-400 (588)
489 PLN03187 meiotic recombination 96.4 0.011 2.3E-07 60.3 7.7 53 249-301 122-183 (344)
490 cd03239 ABC_SMC_head The struc 96.3 0.025 5.4E-07 52.2 9.4 24 255-278 24-47 (178)
491 PRK11545 gntK gluconate kinase 96.3 0.0031 6.7E-08 57.4 3.3 27 259-285 1-27 (163)
492 TIGR00959 ffh signal recogniti 96.3 0.25 5.3E-06 52.0 17.8 37 253-289 99-139 (428)
493 TIGR02236 recomb_radA DNA repa 96.3 0.0078 1.7E-07 60.5 6.5 40 249-288 91-139 (310)
494 KOG0479 DNA replication licens 96.3 0.011 2.5E-07 62.6 7.7 112 255-386 336-479 (818)
495 TIGR02203 MsbA_lipidA lipid A 96.3 0.017 3.8E-07 62.9 9.7 26 252-277 357-382 (571)
496 cd04177 RSR1 RSR1 subgroup. R 96.3 0.02 4.3E-07 51.7 8.5 23 255-277 3-25 (168)
497 TIGR02868 CydC thiol reductant 96.3 0.01 2.3E-07 64.1 7.8 27 251-277 359-385 (529)
498 PLN02165 adenylate isopentenyl 96.3 0.0045 9.7E-08 62.5 4.5 37 253-289 43-79 (334)
499 PRK14730 coaE dephospho-CoA ki 96.3 0.0042 9E-08 58.3 4.1 32 255-286 3-34 (195)
500 TIGR02538 type_IV_pilB type IV 96.3 0.014 3E-07 63.7 8.6 85 216-314 293-395 (564)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-101 Score=768.33 Aligned_cols=436 Identities=50% Similarity=0.857 Sum_probs=407.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhccCCCceEEEEecCCCCccchhHHHHHHHhccCCCccccc
Q 012016 17 TILSTAASVAATVMLARTVARDLLPYEIQDYFYFRLRKFCNRFSSQLTIVIDEHDGLAKNQIYDAAKVYLGKKTSPSVQR 96 (473)
Q Consensus 17 ~~~~~~~S~~a~~~~~~~~~~~~~P~~l~~~~~~~~~~l~~~~~~~~ti~i~e~~~~~~n~ly~a~~~YL~~~~~~~~~r 96 (473)
++|+.+||++|++|++|+|+++++|.+++.|+.+++++|++.++++.++.|.|++|+.+|++|.|+|.||++++++.+.|
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g~~~n~~~~aie~yl~~k~~~~~~r 81 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDGVFRNQLYVAIEVYLSSKSSAIAKR 81 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhccchHHHHHHHHHHhhhccchhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeccCCCceEEecCCCceEEEeecCeeeEEEEEEeeccCCccCCCCCCcccceeEEEEEecCCchhHHHHhhhHHHH
Q 012016 97 IKVSKLEKENHVNISMESDEQVVDVFNGIKLKWVLVCRQVESRSFNHSSTNIQAQVRYFELTFPKKYKDVVIGSYLPCVE 176 (473)
Q Consensus 97 l~~~~~~~~~~~~~~~~~~~~v~D~f~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~~~~~~l~~yl~~v~ 176 (473)
++.+.+.+++++++.++++++|.|+|+||+++|.+++...+...+. .. ..+.|+|+|+|++++|+.|+++|++++.
T Consensus 82 l~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~--~~--~~~~r~~~L~f~k~~~e~V~~syl~~v~ 157 (457)
T KOG0743|consen 82 LTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFV--ER--EREKRYFELTFHKKPRELVTLSYLPYVV 157 (457)
T ss_pred hhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCccccc--cc--CCcceEEEEEecCccHHHhHHhHHHHHH
Confidence 9999999999999999999999999999999999998876655332 11 4678999999999999999999999999
Q ss_pred HHHHHHHhhcceeeEeeecccc-cccCCCCcceeccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCce
Q 012016 177 KEAKSVQQESKTIKILTVNYNN-LYCNWTDAWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRG 255 (473)
Q Consensus 177 ~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg 255 (473)
..+++|+++++.+++|+++... ++...+..|+++.++||.+|++|+|++++|++|++|+..|+++++||+++|+||+||
T Consensus 158 ~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRG 237 (457)
T KOG0743|consen 158 SKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRG 237 (457)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhcc
Confidence 9999999999999999997654 344357899999999999999999999999999999999999999999999999999
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPI 335 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~ 335 (473)
||||||||||||++++||||+|++++|+++++++..+.+|++++..++++|||+||||||.+..++|.+....... .
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~---~ 314 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFE---G 314 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeeccccccccccccccccccc---C
Confidence 9999999999999999999999999999999999999999999999999999999999999998877665432211 1
Q ss_pred cchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc-cCCHHH
Q 012016 336 QQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE-HILFEE 414 (473)
Q Consensus 336 ~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~-~~l~~~ 414 (473)
..++.++|+|||++||+||+||+++|||+||||+++|||||+||||||+||+|++|++++++.|+.|||+.++ |.++++
T Consensus 315 ~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~e 394 (457)
T KOG0743|consen 315 DLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDE 394 (457)
T ss_pred CcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHH
Confidence 3467999999999999999999999999999999999999999999999999999999999999999999985 999999
Q ss_pred HHHHHhcCCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhcccc
Q 012016 415 IEELISTTQVTPAEVAEQLMRND-DPELVLNGLIEFLKVKRKEDED 459 (473)
Q Consensus 415 i~~l~~~~~~t~a~i~~~l~~~~-~~~~al~~l~~~l~~~~~~~~~ 459 (473)
|++++.++.+|||||++.||.+. |++.|+++|+++|+.++.+..+
T Consensus 395 ie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~ 440 (457)
T KOG0743|consen 395 IERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNK 440 (457)
T ss_pred HHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999999999987 8999999999999998875444
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-41 Score=331.43 Aligned_cols=234 Identities=24% Similarity=0.352 Sum_probs=196.4
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc
Q 012016 210 VNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL 289 (473)
Q Consensus 210 ~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~ 289 (473)
+.-.+..++++|+|.++++++|.+.++.++.+++.|.++|+.||+|+|||||||||||.||+|+|++.+..|+.+..+++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 33455689999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ------cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceE
Q 012016 290 ------RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERI 361 (473)
Q Consensus 290 ------~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~i 361 (473)
.+..-++++|.-+. .||||||||||+++. .|... ..+++.+.++++-+||++|||+.+. +++-
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~--kR~d~-----~t~gDrEVQRTmleLL~qlDGFD~~--~nvK 292 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGA--KRFDS-----GTSGDREVQRTMLELLNQLDGFDPR--GNVK 292 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhc--ccccC-----CCCchHHHHHHHHHHHHhccCCCCC--CCeE
Confidence 24456778887664 789999999999986 33222 1245677899999999999999664 6799
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc---cccCCHHHHHHHHhcCCCCHHHHHHHHhcC--
Q 012016 362 IVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI---KEHILFEEIEELISTTQVTPAEVAEQLMRN-- 436 (473)
Q Consensus 362 iI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~---~~~~l~~~i~~l~~~~~~t~a~i~~~l~~~-- 436 (473)
||++||+++.|||||+||||||+.|+||+|+.++|.+|++.+.+. .+...++.++.+.+ ++|+||+...|...
T Consensus 293 VI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~--g~sGAdlkaictEAGm 370 (406)
T COG1222 293 VIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTE--GFSGADLKAICTEAGM 370 (406)
T ss_pred EEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcC--CCchHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999987654 35566777777665 49999999998643
Q ss_pred -----CCHHHHHHHHHHHHHHhh
Q 012016 437 -----DDPELVLNGLIEFLKVKR 454 (473)
Q Consensus 437 -----~~~~~al~~l~~~l~~~~ 454 (473)
+......+++.++.++.-
T Consensus 371 ~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 371 FAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHhccCeecHHHHHHHHHHHH
Confidence 333445566666665443
No 3
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-38 Score=321.47 Aligned_cols=206 Identities=28% Similarity=0.376 Sum_probs=177.5
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc-----
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL----- 289 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~----- 289 (473)
..+|+++.|-++.|+++.+ +..|++.|+.|.++|...|+|+||.||||||||.||+|+|.+.++|||....++.
T Consensus 300 nv~F~dVkG~DEAK~ELeE-iVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEE-IVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHH-HHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 3689999999999999866 6669999999999999999999999999999999999999999999999998886
Q ss_pred -cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEec
Q 012016 290 -RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTT 366 (473)
Q Consensus 290 -~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 366 (473)
.+...+|.+|..+. .||||||||||+++.. |... +....+.++++||..|||+..+ +++|||++|
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~k--R~~~--------~~~y~kqTlNQLLvEmDGF~qN--eGiIvigAT 446 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGK--RNPS--------DQHYAKQTLNQLLVEMDGFKQN--EGIIVIGAT 446 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhccc--CCcc--------HHHHHHHHHHHHHHHhcCcCcC--CceEEEecc
Confidence 25688999998875 7899999999999763 3222 1236789999999999999765 569999999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC-CCCHHHHHHHH
Q 012016 367 NHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT-QVTPAEVAEQL 433 (473)
Q Consensus 367 N~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~t~a~i~~~l 433 (473)
|.|+.||+||+||||||+||.+|.|+...|.+|+..|+..-.+.-.-+..-++.++ ++++||+++++
T Consensus 447 Nfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 447 NFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred CChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999865333333444445543 79999998876
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-37 Score=317.76 Aligned_cols=210 Identities=25% Similarity=0.351 Sum_probs=184.1
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc----
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL---- 289 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~---- 289 (473)
++.+|++|+|.+++|+++.+.+..+++.++.|.++|+.+++|||||||||||||++|+|+|++.+.+|+.+.+.++
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~ 508 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKY 508 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHh
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred --cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEe
Q 012016 290 --RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFT 365 (473)
Q Consensus 290 --~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 365 (473)
.++..++++|.++. .||||||||||++...|+ +. ......+.+++||+.|||+... .+++||++
T Consensus 509 vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~--g~--------~~~v~~RVlsqLLtEmDG~e~~--k~V~ViAA 576 (693)
T KOG0730|consen 509 VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRG--GS--------SSGVTDRVLSQLLTEMDGLEAL--KNVLVIAA 576 (693)
T ss_pred cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC--CC--------ccchHHHHHHHHHHHccccccc--CcEEEEec
Confidence 35788999999886 689999999999987332 11 1245789999999999999654 56999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC-CCCHHHHHHHHhc
Q 012016 366 TNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT-QVTPAEVAEQLMR 435 (473)
Q Consensus 366 TN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~t~a~i~~~l~~ 435 (473)
||+|+.||+||+||||||..|++|+|+.+.|.+|++.++..-.....-+++.|++.+ +||+|||.+.|.+
T Consensus 577 TNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 577 TNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQE 647 (693)
T ss_pred cCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHH
Confidence 999999999999999999999999999999999999998765444444556666543 6999999999854
No 5
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-36 Score=320.67 Aligned_cols=250 Identities=27% Similarity=0.380 Sum_probs=203.8
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc---
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL--- 289 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~--- 289 (473)
+.+.+|.|++|.++.|++|++.+ .|+++++.|.++|...|+|+||+||||||||.||+|+|.+.++||+.++.++.
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 44589999999999999998855 59999999999999999999999999999999999999999999999999986
Q ss_pred ---cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 290 ---RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 290 ---~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
...+.++.+|..+. .|||+||||||++...+. .... .+.+.+...++++||..|||..+. .++|+++
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~-G~~~-----~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a 455 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRG-GKGT-----GGGQDEREQTLNQLLVEMDGFETS--KGVIVLA 455 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEeccccccccccc-cccc-----CCCChHHHHHHHHHHHHhcCCcCC--CcEEEEe
Confidence 24788999998876 689999999999976332 1011 244566789999999999999765 5699999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccC-CHHHHHHHHh-cCCCCHHHHHHHHhc-------
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHI-LFEEIEELIS-TTQVTPAEVAEQLMR------- 435 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~-l~~~i~~l~~-~~~~t~a~i~~~l~~------- 435 (473)
+||+++.||+||+||||||++|+++.|+..+|..|+..+++..... ...++.++.. ..++++|||+++|..
T Consensus 456 ~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r 535 (774)
T KOG0731|consen 456 ATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAAR 535 (774)
T ss_pred ccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999998765332 3344444444 347999999998752
Q ss_pred C-------CCHHHHHHHHHHHHHHhhh--cccccCcccccccccc
Q 012016 436 N-------DDPELVLNGLIEFLKVKRK--EDEDAKPRKIHEESTE 471 (473)
Q Consensus 436 ~-------~~~~~al~~l~~~l~~~~~--~~~~~~~~~~~e~~~~ 471 (473)
+ .+.+.|++.++..++.+.. ..++.+..++||+.|.
T Consensus 536 ~~~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha 580 (774)
T KOG0731|consen 536 KGLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHA 580 (774)
T ss_pred hccCccchhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccch
Confidence 1 3556666666665544332 3446778899998873
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-35 Score=301.20 Aligned_cols=208 Identities=22% Similarity=0.332 Sum_probs=182.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc----
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL---- 289 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~---- 289 (473)
+..+|++|++.++++.++...+..++++++.|+++|+..|.|+|||||||||||.||+|+||+.|.+|+.+...++
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred --cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEe
Q 012016 290 --RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFT 365 (473)
Q Consensus 290 --~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 365 (473)
.++..+|.+|..+. .||||||||||++.+.|+. +....+.+.+++||..|||+... .++.||++
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~----------~~s~~s~RvvNqLLtElDGl~~R--~gV~viaA 653 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSD----------EGSSVSSRVVNQLLTELDGLEER--RGVYVIAA 653 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCC----------CCchhHHHHHHHHHHHhcccccc--cceEEEee
Confidence 35678999998875 7999999999999874332 22445789999999999999665 45999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc-----ccCCHHHHHHHHhcCCCCHHHHHHHH
Q 012016 366 TNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK-----EHILFEEIEELISTTQVTPAEVAEQL 433 (473)
Q Consensus 366 TN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~-----~~~l~~~i~~l~~~~~~t~a~i~~~l 433 (473)
||+|+.+|||++||||||..+++++|+.++|..|++...... ....+++|++...-.+||+||++.++
T Consensus 654 TNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLv 726 (802)
T KOG0733|consen 654 TNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALV 726 (802)
T ss_pred cCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHH
Confidence 999999999999999999999999999999999999988743 33445666665554579999998886
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-35 Score=303.70 Aligned_cols=218 Identities=20% Similarity=0.340 Sum_probs=185.2
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc------
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL------ 289 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~------ 289 (473)
.+|.+|+|.++...++.+.+.. +++++.|..+|..|+||+|||||||||||+||+|+|+++++|++.++..++
T Consensus 187 v~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred cchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 5899999999999999887765 999999999999999999999999999999999999999999999999887
Q ss_pred cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccC--CCCceEEEEe
Q 012016 290 RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSS--CGDERIIVFT 365 (473)
Q Consensus 290 ~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~--~~~~~iiI~t 365 (473)
.++..++++|..+. .|||+||||||++.+.|.-. .....++++++||+.||++... .|..++||++
T Consensus 266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a----------qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgA 335 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA----------QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGA 335 (802)
T ss_pred ccHHHHHHHHHHHhccCCeEEEeecccccccchhhH----------HHHHHHHHHHHHHHhhhcccccccCCCCeEEEec
Confidence 35789999999986 69999999999998744321 1344689999999999998654 3577999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc---cccCCHHHHHHHHhcCCCCHHHHHHHHhcCCCHHHH
Q 012016 366 TNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI---KEHILFEEIEELISTTQVTPAEVAEQLMRNDDPELV 442 (473)
Q Consensus 366 TN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~---~~~~l~~~i~~l~~~~~~t~a~i~~~l~~~~~~~~a 442 (473)
||+|+.|||||+|+||||..|.+..|+..+|..|++..+.. .....+..++.+.. +|.+||+..+|.. ....|
T Consensus 336 TnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTP--GfVGADL~AL~~~--Aa~vA 411 (802)
T KOG0733|consen 336 TNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTP--GFVGADLMALCRE--AAFVA 411 (802)
T ss_pred CCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCC--CccchhHHHHHHH--HHHHH
Confidence 99999999999999999999999999999999999987763 34445666666655 5999999888744 24456
Q ss_pred HHHHHH
Q 012016 443 LNGLIE 448 (473)
Q Consensus 443 l~~l~~ 448 (473)
++.+.+
T Consensus 412 ikR~ld 417 (802)
T KOG0733|consen 412 IKRILD 417 (802)
T ss_pred HHHHhh
Confidence 666444
No 8
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-34 Score=267.75 Aligned_cols=215 Identities=25% Similarity=0.395 Sum_probs=181.7
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc---
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL--- 289 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~--- 289 (473)
.+..++.+++|.+-+|++|.+.++.++...+.|+++|+.||||+|||||||||||+|++|+|++....|+.+..+++
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred ---cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 290 ---RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 290 ---~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
.+...++.+|.-+. .|+||||||||++.. .|.+. ..|.+.+.++.+-.|||.|||+... .++-+|+
T Consensus 229 ylgegprmvrdvfrlakenapsiifideidaiat--krfda-----qtgadrevqril~ellnqmdgfdq~--~nvkvim 299 (408)
T KOG0727|consen 229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT--KRFDA-----QTGADREVQRILIELLNQMDGFDQT--TNVKVIM 299 (408)
T ss_pred HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh--hhccc-----cccccHHHHHHHHHHHHhccCcCcc--cceEEEE
Confidence 24566788877654 789999999999975 34322 2355677889999999999999654 6799999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHh-cCCCCHHHHHHHHhcC
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIS-TTQVTPAEVAEQLMRN 436 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~-~~~~t~a~i~~~l~~~ 436 (473)
+||+.+.|||||+||||+|+.|+||+|+..+++-++......-.....-+++.++. ...+|.|+|...|...
T Consensus 300 atnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqea 372 (408)
T KOG0727|consen 300 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEA 372 (408)
T ss_pred ecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999888887665443333445555554 4469999998888653
No 9
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-34 Score=299.84 Aligned_cols=246 Identities=25% Similarity=0.350 Sum_probs=206.5
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc---
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL--- 289 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~--- 289 (473)
....+|.+++|.++.|+++.+ +..|++.+..|..+|...|+|+||+||||||||.||+|+|.+.+.|++.++.++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 344799999999999999987 5559999999999999999999999999999999999999999999999999986
Q ss_pred ---cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 290 ---RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 290 ---~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
...+.+|.+|.++. .|||+||||||++...|+.. ..+.+.....++++||.+|||+..+ +++|+++
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g-------~GggnderEQTLNQlLvEmDGF~~~--~gvivia 293 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG-------LGGGNDEREQTLNQLLVEMDGFGGN--EGVIVIA 293 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCC-------CCCCchHHHHHHHHHHhhhccCCCC--CceEEEe
Confidence 36789999999986 59999999999996533222 1244566778999999999999754 5699999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcccc---CCHHHHHHHHhcCCCCHHHHHHHHh-------
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEH---ILFEEIEELISTTQVTPAEVAEQLM------- 434 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~---~l~~~i~~l~~~~~~t~a~i~~~l~------- 434 (473)
+||+|+-|||||+||||||++|.++.|+...|.+|++-++..... .....+++... +++.|++++.+.
T Consensus 294 aTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tp--GfsGAdL~nl~NEAal~aa 371 (596)
T COG0465 294 ATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTP--GFSGADLANLLNEAALLAA 371 (596)
T ss_pred cCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCC--CcccchHhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999976654422 33334443333 699999988873
Q ss_pred -------cCCCHHHHHHHHHHHHHHhhh--cccccCccccccccc
Q 012016 435 -------RNDDPELVLNGLIEFLKVKRK--EDEDAKPRKIHEEST 470 (473)
Q Consensus 435 -------~~~~~~~al~~l~~~l~~~~~--~~~~~~~~~~~e~~~ 470 (473)
...+.+.|.+.++...+++.+ .+++++.++|||.+|
T Consensus 372 r~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEagh 416 (596)
T COG0465 372 RRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGH 416 (596)
T ss_pred HhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHH
Confidence 236889999999998887765 556788899999865
No 10
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-33 Score=291.06 Aligned_cols=231 Identities=23% Similarity=0.314 Sum_probs=187.8
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc-
Q 012016 211 NLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL- 289 (473)
Q Consensus 211 ~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~- 289 (473)
+.-+..+|+||+|.+++|.+|++.+..++++++.|.. |...+.|+|||||||||||.+|+|+|.++.+.|+.+...++
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 3456679999999999999999999999999997765 66667899999999999999999999999999999998887
Q ss_pred -----cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEE
Q 012016 290 -----RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERII 362 (473)
Q Consensus 290 -----~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ii 362 (473)
+++.++|++|.++. .|||||+||+|.+.+.|++.+.. .+-..+.+++||.+|||+.......+.|
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDS--------GGVMDRVVSQLLAELDgls~~~s~~VFV 814 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDS--------GGVMDRVVSQLLAELDGLSDSSSQDVFV 814 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCc--------cccHHHHHHHHHHHhhcccCCCCCceEE
Confidence 46789999999986 79999999999999977664322 2457899999999999998656678999
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHH-HHHHHHHH---hCccccCCHHHHHHHHhcCCCCHHHHHHHHhcCCC
Q 012016 363 VFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSG-FKLLAANY---LGIKEHILFEEIEELISTTQVTPAEVAEQLMRNDD 438 (473)
Q Consensus 363 I~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~-r~~l~~~~---l~~~~~~l~~~i~~l~~~~~~t~a~i~~~l~~~~~ 438 (473)
|++||+|+-|||||+||||||.-++++.+..++ +..+++.. +..++.....+|+..+.. .+|+||+-.+|-. .
T Consensus 815 iGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~-~~TGADlYsLCSd--A 891 (953)
T KOG0736|consen 815 IGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPP-NMTGADLYSLCSD--A 891 (953)
T ss_pred EecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCc-CCchhHHHHHHHH--H
Confidence 999999999999999999999999999986655 45555543 344455556666666553 6999999888732 2
Q ss_pred HHHHHHHHHHHHHHh
Q 012016 439 PELVLNGLIEFLKVK 453 (473)
Q Consensus 439 ~~~al~~l~~~l~~~ 453 (473)
.-.|+++-+..++..
T Consensus 892 ~l~AikR~i~~ie~g 906 (953)
T KOG0736|consen 892 MLAAIKRTIHDIESG 906 (953)
T ss_pred HHHHHHHHHHHhhhc
Confidence 344555555555444
No 11
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-33 Score=266.89 Aligned_cols=217 Identities=26% Similarity=0.356 Sum_probs=178.6
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc
Q 012016 210 VNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL 289 (473)
Q Consensus 210 ~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~ 289 (473)
+...+..++.+++|.+.+.++|.+.++.++.++++|...|+.+|+|++|||+||||||.||+|+||.....|+.+-.+++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 34455579999999999999999999999999999999999999999999999999999999999999999998888876
Q ss_pred c------CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceE
Q 012016 290 R------SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERI 361 (473)
Q Consensus 290 ~------~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~i 361 (473)
. +..-++++|.-+. .|||+||||||++.. .|-+.. ++.....++++-.|||.+||+.+. +.+-
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGt--KRyds~-----SggerEiQrtmLELLNQldGFdsr--gDvK 326 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT--KRYDSN-----SGGEREIQRTMLELLNQLDGFDSR--GDVK 326 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhcc--ccccCC-----CccHHHHHHHHHHHHHhccCcccc--CCeE
Confidence 2 3345677777654 799999999999975 332222 355667788999999999999774 5699
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHh-cCCCCHHHHHHHHhc
Q 012016 362 IVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIS-TTQVTPAEVAEQLMR 435 (473)
Q Consensus 362 iI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~-~~~~t~a~i~~~l~~ 435 (473)
||++||+.+.|||||+||||+|+.|+||.|+...++.||...-..-...-.-.++.++. ...+|+|||...|..
T Consensus 327 vimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictE 401 (440)
T KOG0726|consen 327 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTE 401 (440)
T ss_pred EEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHH
Confidence 99999999999999999999999999999999999998875544322112223444443 456999999888754
No 12
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=9e-32 Score=276.90 Aligned_cols=232 Identities=23% Similarity=0.345 Sum_probs=183.1
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc--
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-- 290 (473)
.++.+|++|+|.+.+|++|.+.+..++.+++.|.++|.++++|+|||||||||||++++++|++++.+++.+..+.+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 455799999999999999999999999999999999999999999999999999999999999999999998876642
Q ss_pred ----CchHHHHHHHHh--ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVAT--ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~--~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
+...++++|..+ .+|+||||||||.++..+ .... .+.+....+.+..||+.+|++... .+++||+
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r--~~~~-----~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~ 289 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKR--FDAQ-----TGADREVQRILLELLNQMDGFDQT--TNVKVIM 289 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccc--cccc-----CCccHHHHHHHHHHHHHhhccCCC--CCEEEEE
Confidence 234567777655 478999999999997522 1111 122334567889999999998654 4589999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhc-CCCCHHHHHHHHhc-------C
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIST-TQVTPAEVAEQLMR-------N 436 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~t~a~i~~~l~~-------~ 436 (473)
|||+++.||||++||||||.+|+|++|+.++|..|++.++........-++..++.. .++|+|||..+|.. .
T Consensus 290 aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 290 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369 (398)
T ss_pred ecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999988765432222234444432 36999999888753 2
Q ss_pred CCHHHHHHHHHHHHHHh
Q 012016 437 DDPELVLNGLIEFLKVK 453 (473)
Q Consensus 437 ~~~~~al~~l~~~l~~~ 453 (473)
+......+++.+++++.
T Consensus 370 ~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 370 NRYVILPKDFEKGYKTV 386 (398)
T ss_pred CCCccCHHHHHHHHHHH
Confidence 23344455666666543
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-32 Score=256.33 Aligned_cols=214 Identities=28% Similarity=0.370 Sum_probs=179.1
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc--
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL-- 289 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~-- 289 (473)
.-+..+++-++|.+.+.++|.+.++.++++++.|..+|++-|+|+|||||||||||.||+|+|++....|+.++.+++
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 344578899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ----cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEE
Q 012016 290 ----RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIV 363 (473)
Q Consensus 290 ----~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI 363 (473)
.+...++++|..+. .|+|||+||||.+... |... ..|++...++++-.|||.+||+... .++-+|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~--r~e~-----~~ggdsevqrtmlellnqldgfeat--knikvi 290 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSS--RVES-----GSGGDSEVQRTMLELLNQLDGFEAT--KNIKVI 290 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccc--cccC-----CCCccHHHHHHHHHHHHhccccccc--cceEEE
Confidence 23456788887765 7999999999999763 2221 2345667889999999999999765 569999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc---ccCCHHHHHHHHhcCCCCHHHHHHHHhcC
Q 012016 364 FTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK---EHILFEEIEELISTTQVTPAEVAEQLMRN 436 (473)
Q Consensus 364 ~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~---~~~l~~~i~~l~~~~~~t~a~i~~~l~~~ 436 (473)
++||+.+-|||||+||||+|+.|+||.|+.++|.+|++..-+.- .......|++-+. +.|+|++...|...
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~--gasgaevk~vctea 364 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMP--GASGAEVKGVCTEA 364 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCC--CCccchhhhhhhhh
Confidence 99999999999999999999999999999999999998654432 2333445554443 47888888877543
No 14
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5e-32 Score=254.49 Aligned_cols=219 Identities=26% Similarity=0.364 Sum_probs=187.8
Q ss_pred ceeccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 207 WIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 207 w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
...+.-.+..++.+++|-.++.+.+.+.++.++.+++.|-++|+.||+|+|||||||||||.+|+|+||..+.-|+.+-.
T Consensus 165 mm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvig 244 (435)
T KOG0729|consen 165 MMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIG 244 (435)
T ss_pred EEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehh
Confidence 34566677789999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccc------cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCC
Q 012016 287 TEL------RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGD 358 (473)
Q Consensus 287 ~~~------~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 358 (473)
+++ .+...++++|..+. ..||||+||||++.+ .|. .++.+++++.++++-.|++.+||+... +
T Consensus 245 selvqkyvgegarmvrelf~martkkaciiffdeidaigg--arf-----ddg~ggdnevqrtmleli~qldgfdpr--g 315 (435)
T KOG0729|consen 245 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGG--ARF-----DDGAGGDNEVQRTMLELINQLDGFDPR--G 315 (435)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccC--ccc-----cCCCCCcHHHHHHHHHHHHhccCCCCC--C
Confidence 876 24567788888775 469999999999975 232 223355677889999999999999653 6
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHh---CccccCCHHHHHHHHhcCCCCHHHHHHHHhc
Q 012016 359 ERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYL---GIKEHILFEEIEELISTTQVTPAEVAEQLMR 435 (473)
Q Consensus 359 ~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l---~~~~~~l~~~i~~l~~~~~~t~a~i~~~l~~ 435 (473)
++-++++||+|+.|||||+||||+|+.++|.+|+.+.|..|++.+. ..+...-++-+++|+.+ -|+|++...|..
T Consensus 316 nikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpn--stgaeirsvcte 393 (435)
T KOG0729|consen 316 NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPN--STGAEIRSVCTE 393 (435)
T ss_pred CeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCC--CcchHHHHHHHH
Confidence 7899999999999999999999999999999999999998887544 34455668888888886 789999888865
Q ss_pred C
Q 012016 436 N 436 (473)
Q Consensus 436 ~ 436 (473)
.
T Consensus 394 a 394 (435)
T KOG0729|consen 394 A 394 (435)
T ss_pred h
Confidence 4
No 15
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=2.7e-31 Score=282.79 Aligned_cols=248 Identities=25% Similarity=0.355 Sum_probs=192.0
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc--
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-- 290 (473)
.+..+|++++|.+++|+++.+.+ .+++.++.|...|..+++|+|||||||||||++++++|++++.+++.++++++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~-~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIV-DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH-HHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 45679999999999999988654 578999999999999999999999999999999999999999999999987652
Q ss_pred ----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
+...++.+|..+. .|+||||||||.++..+... . .+.+.....++++||+.||++.+. ++++||+
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~--~-----~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~ 198 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG--L-----GGGNDEREQTLNQLLVEMDGFGTN--TGVIVIA 198 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccC--c-----CCccHHHHHHHHHHHhhhccccCC--CCeEEEE
Confidence 3467888888764 68999999999997632211 0 112334567899999999998654 4599999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC-CCCHHHHHHHHhc-------C
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT-QVTPAEVAEQLMR-------N 436 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~t~a~i~~~l~~-------~ 436 (473)
|||+++.|||+++||||||.+|+++.|+.++|.+|++.++.........++..++..+ ++|++|+..++-+ .
T Consensus 199 aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~ 278 (495)
T TIGR01241 199 ATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK 278 (495)
T ss_pred ecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998765333334455555543 6999999877642 2
Q ss_pred CCHHHHHHHHHHHHHHhhh---------cccccCccccccccc
Q 012016 437 DDPELVLNGLIEFLKVKRK---------EDEDAKPRKIHEEST 470 (473)
Q Consensus 437 ~~~~~al~~l~~~l~~~~~---------~~~~~~~~~~~e~~~ 470 (473)
+......+++..++++... ...+.+..++||++|
T Consensus 279 ~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGh 321 (495)
T TIGR01241 279 NKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGH 321 (495)
T ss_pred CCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhH
Confidence 2333445566666654321 123345668888875
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-31 Score=249.98 Aligned_cols=212 Identities=21% Similarity=0.336 Sum_probs=175.2
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc---
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL--- 289 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~--- 289 (473)
.+..++++++|.+.+.+++++.+..++.+++.|..+|+.||+|+|+|||||||||.+|+|+|...+..|..+-...+
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 34468999999999999999999999999999999999999999999999999999999999999988887776665
Q ss_pred --cC-chHHHHHHHHh--ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 290 --RS-NSDLRTLLVAT--ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 290 --~~-~~~l~~l~~~~--~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
.+ ..-++..|.-+ ..|+||||||+|+++. .|..... .++...++++-.|||.+||+.+. +.+-||+
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGt--KRfDSek-----~GDREVQRTMLELLNQLDGFss~--~~vKviA 315 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGT--KRFDSEK-----AGDREVQRTMLELLNQLDGFSSD--DRVKVIA 315 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhcc--ccccccc-----cccHHHHHHHHHHHHhhcCCCCc--cceEEEe
Confidence 22 33455555544 4799999999999975 4433322 33556789999999999999665 6799999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC---ccccCCHHHHHHHHhcCCCCHHHHHHHHhc
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG---IKEHILFEEIEELISTTQVTPAEVAEQLMR 435 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~---~~~~~l~~~i~~l~~~~~~t~a~i~~~l~~ 435 (473)
+||+.+-|||||+|.||+|+.|+||.|+.+.|..|++..-+ ......++++++-.+ .+.+|+....|+.
T Consensus 316 ATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTd--dFNGAQcKAVcVE 387 (424)
T KOG0652|consen 316 ATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTD--DFNGAQCKAVCVE 387 (424)
T ss_pred ecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhccc--ccCchhheeeehh
Confidence 99999999999999999999999999999999988876544 445666777776555 4888887776653
No 17
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8e-31 Score=257.65 Aligned_cols=205 Identities=20% Similarity=0.323 Sum_probs=171.7
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc----
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR---- 290 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~---- 290 (473)
...|++|+|..+.|+-|.+.+..++.-+++|+.+-.||+ |+|++||||||||+||+|+|.+.+..|+.++.+.+.
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWk-gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWR 286 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccc-eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhc
Confidence 368999999999999999999999999999998877775 999999999999999999999999999999988873
Q ss_pred -CchHHHHHHHHhc---cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCC--ceEEEE
Q 012016 291 -SNSDLRTLLVATA---NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGD--ERIIVF 364 (473)
Q Consensus 291 -~~~~l~~l~~~~~---~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~--~~iiI~ 364 (473)
..+.+.++|..+. .|++|||||||.|+..|++ ++++..+++.-+.||.+|||+...... -++|++
T Consensus 287 GeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~---------s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 287 GESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGG---------SSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred cchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCC---------ccchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 3355666665554 7999999999999874433 245677899999999999998654322 266778
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc---ccCCHHHHHHHHhcCCCCHHHHHHHH
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK---EHILFEEIEELISTTQVTPAEVAEQL 433 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~---~~~l~~~i~~l~~~~~~t~a~i~~~l 433 (473)
+||.|++||.||+| ||...|++|+|+.++|..|++..++.- +....+++.+.++ +||++||..+|
T Consensus 358 ATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~e--GySGaDI~nvC 425 (491)
T KOG0738|consen 358 ATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSE--GYSGADITNVC 425 (491)
T ss_pred ccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhc--CCChHHHHHHH
Confidence 99999999999999 999999999999999999999998754 2334455555444 59999999888
No 18
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=1e-30 Score=282.55 Aligned_cols=248 Identities=24% Similarity=0.339 Sum_probs=193.3
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc--
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-- 290 (473)
....+|++++|.++.|+++.+ +..+++.++.|...|..+++|+||+||||||||++|+++|++++.|++.++++++.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~e-iv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHH-HHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 445799999999999988865 55688999999999999999999999999999999999999999999999988752
Q ss_pred ----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
....++.+|..+. .||||||||||+++..++ ... .+.+.....+++.||..||++... .+++||+
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~--~~~-----~~~~~e~~~~L~~LL~~~dg~~~~--~~ViVIa 326 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRG--AGI-----GGGNDEREQTLNQLLTEMDGFKGN--KGVIVIA 326 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhccc--CCC-----CCCcHHHHHHHHHHHhhhccccCC--CCeeEEE
Confidence 3456778887764 689999999999975221 111 122344567899999999998654 4599999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC-CCCHHHHHHHHhc-------C
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT-QVTPAEVAEQLMR-------N 436 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~t~a~i~~~l~~-------~ 436 (473)
|||+++.+||||+||||||.+|+++.|+.++|..|++.++..........+..++..+ +++++|+..++-+ .
T Consensus 327 aTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 327 ATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred ecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998765433444556666544 6999999877632 1
Q ss_pred -------CCHHHHHHHHHHHHHHhhh-cccccCccccccccc
Q 012016 437 -------DDPELVLNGLIEFLKVKRK-EDEDAKPRKIHEEST 470 (473)
Q Consensus 437 -------~~~~~al~~l~~~l~~~~~-~~~~~~~~~~~e~~~ 470 (473)
.+.+.|++.++..++.+.. ...+.+..++||++|
T Consensus 407 ~~~~It~~dl~~Ai~rv~~g~~~~~~~~~~~~~~vA~hEaGh 448 (638)
T CHL00176 407 KKATITMKEIDTAIDRVIAGLEGTPLEDSKNKRLIAYHEVGH 448 (638)
T ss_pred CCCCcCHHHHHHHHHHHHhhhccCccccHHHHHHHHHHhhhh
Confidence 2345555555544443322 233456679999876
No 19
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=2.2e-30 Score=271.74 Aligned_cols=205 Identities=23% Similarity=0.349 Sum_probs=160.5
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCc----------eE
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD----------VY 282 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~----------~~ 282 (473)
.++.+|++|+|.++++++|.+.+..++.+++.|+..|.++++|+|||||||||||++++++|++++.+ ++
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999765 23
Q ss_pred Eccccccc------CchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhc
Q 012016 283 DLELTELR------SNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFID 350 (473)
Q Consensus 283 ~l~~~~~~------~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ld 350 (473)
.+..+++. ....++.+|..+. .++||||||+|+++..++ .. ..+...+..+++||+.||
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~--~~-------~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRG--SG-------VSSDVETTVVPQLLSELD 326 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccC--CC-------ccchHHHHHHHHHHHHhc
Confidence 33333321 2345666666543 589999999999986322 11 112234678899999999
Q ss_pred ccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcCCCCHHHHH
Q 012016 351 GLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTTQVTPAEVA 430 (473)
Q Consensus 351 g~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~t~a~i~ 430 (473)
|+.+. ++++||+|||+++.|||||+||||||.+|+|++|+.++|++|+++|+... .++.+++.. ..+.+.+++.
T Consensus 327 gl~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~l~~---~~g~~~a~~~ 400 (512)
T TIGR03689 327 GVESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDADLAE---FDGDREATAA 400 (512)
T ss_pred ccccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHHHHH---hcCCCHHHHH
Confidence 99764 46999999999999999999999999999999999999999999998743 233333332 2345555544
Q ss_pred HH
Q 012016 431 EQ 432 (473)
Q Consensus 431 ~~ 432 (473)
.+
T Consensus 401 al 402 (512)
T TIGR03689 401 AL 402 (512)
T ss_pred HH
Confidence 43
No 20
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=4.8e-30 Score=264.82 Aligned_cols=232 Identities=25% Similarity=0.336 Sum_probs=183.7
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc-
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR- 290 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~- 290 (473)
..+..+|++|+|.+++++++.+.+..++.+++.|+.+|..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 3445789999999999999999999999999999999999999999999999999999999999999999999988762
Q ss_pred -----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEE
Q 012016 291 -----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIV 363 (473)
Q Consensus 291 -----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI 363 (473)
....++.+|..+. .|+||||||||.++..+. ... ...+.....++..|++.+|++... .+++||
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~--~~~-----~~~~~~~~~~l~~lL~~ld~~~~~--~~v~VI 274 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRT--DSG-----TSGDREVQRTLMQLLAEMDGFDPR--GNVKII 274 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccc--cCC-----CCccHHHHHHHHHHHHhccccCCC--CCEEEE
Confidence 2345667776654 689999999999975321 111 111234467788899999987543 468999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcccc---CCHHHHHHHHhcCCCCHHHHHHHHhc-----
Q 012016 364 FTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEH---ILFEEIEELISTTQVTPAEVAEQLMR----- 435 (473)
Q Consensus 364 ~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~---~l~~~i~~l~~~~~~t~a~i~~~l~~----- 435 (473)
+|||+++.+|++++||||||..|+|+.|+.++|.+|++.++..... .....++... .+++++|+..+|..
T Consensus 275 ~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t--~g~sgadl~~l~~eA~~~a 352 (389)
T PRK03992 275 AATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELT--EGASGADLKAICTEAGMFA 352 (389)
T ss_pred EecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998865422 3344444443 36999999887753
Q ss_pred --CCCHHHHHHHHHHHHHHhh
Q 012016 436 --NDDPELVLNGLIEFLKVKR 454 (473)
Q Consensus 436 --~~~~~~al~~l~~~l~~~~ 454 (473)
.+......+++.++++..+
T Consensus 353 ~~~~~~~i~~~d~~~A~~~~~ 373 (389)
T PRK03992 353 IRDDRTEVTMEDFLKAIEKVM 373 (389)
T ss_pred HHcCCCCcCHHHHHHHHHHHh
Confidence 2333345666776666543
No 21
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.6e-30 Score=266.75 Aligned_cols=232 Identities=24% Similarity=0.269 Sum_probs=190.6
Q ss_pred CcceeccCCCC--CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceE
Q 012016 205 DAWIPVNLDHP--ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (473)
Q Consensus 205 ~~w~~~~~~~p--~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~ 282 (473)
...+.+.+..+ ..|++++|..++|+.+.+.+..+.+.+..|...+.+.+.|+|||||||||||.||.|+|...++.++
T Consensus 651 ~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fi 730 (952)
T KOG0735|consen 651 LALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFI 730 (952)
T ss_pred HHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEE
Confidence 35566666554 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ecccccc------cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccccc
Q 012016 283 DLELTEL------RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWS 354 (473)
Q Consensus 283 ~l~~~~~------~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~ 354 (473)
.+...++ .++..+|.+|..+. .|||||+||+|.+.+.|+.. ..+...+.+++||..|||...
T Consensus 731 svKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD----------sTGVTDRVVNQlLTelDG~Eg 800 (952)
T KOG0735|consen 731 SVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD----------STGVTDRVVNQLLTELDGAEG 800 (952)
T ss_pred EecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC----------CCCchHHHHHHHHHhhccccc
Confidence 9998876 35788999998875 79999999999998843321 123467899999999999865
Q ss_pred CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhc-CCCCHHHHHHHH
Q 012016 355 SCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIST-TQVTPAEVAEQL 433 (473)
Q Consensus 355 ~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~t~a~i~~~l 433 (473)
- .++.|+++|.+|+.+||||+||||+|+.|+.+.|+..+|.+|+...-.........+++.++.. .++|+||++.+|
T Consensus 801 l--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll 878 (952)
T KOG0735|consen 801 L--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLL 878 (952)
T ss_pred c--ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHH
Confidence 4 5699999999999999999999999999999999999999999876654434444455555543 369999999888
Q ss_pred hcCCCHHHHHHHHHHHHHHh
Q 012016 434 MRNDDPELVLNGLIEFLKVK 453 (473)
Q Consensus 434 ~~~~~~~~al~~l~~~l~~~ 453 (473)
.. .-+..+-+++.+.
T Consensus 879 ~~-----A~l~avh~~l~~~ 893 (952)
T KOG0735|consen 879 YN-----AQLAAVHEILKRE 893 (952)
T ss_pred HH-----HHHHHHHHHHHhc
Confidence 43 3344444555433
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=5.2e-30 Score=265.58 Aligned_cols=233 Identities=23% Similarity=0.305 Sum_probs=181.4
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc-
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR- 290 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~- 290 (473)
..++.+|++|+|.++++++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.+..+++.
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 4455899999999999999999999999999999999999999999999999999999999999999999998877652
Q ss_pred -----CchHHHHHHHHh--ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEE
Q 012016 291 -----SNSDLRTLLVAT--ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIV 363 (473)
Q Consensus 291 -----~~~~l~~l~~~~--~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI 363 (473)
+...++.+|..+ ..|+||||||||.++.. |.... .+.......++..||+.+|++... .++.||
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~k--R~~~~-----sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI 326 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTK--RYDAT-----SGGEKEIQRTMLELLNQLDGFDSR--GDVKVI 326 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhcc--CCCCC-----CcccHHHHHHHHHHHHHHhhhccc--CCeEEE
Confidence 233466677655 36899999999999752 21111 122334567788999999998543 458999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHh-cCCCCHHHHHHHHhc-------
Q 012016 364 FTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIS-TTQVTPAEVAEQLMR------- 435 (473)
Q Consensus 364 ~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~-~~~~t~a~i~~~l~~------- 435 (473)
+|||+++.|||+++||||||.+|+|+.|+.++|..|++.++.........++..++. ..++|+|++..+|..
T Consensus 327 ~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr 406 (438)
T PTZ00361 327 MATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR 406 (438)
T ss_pred EecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999886543222223444443 336999999887742
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 012016 436 NDDPELVLNGLIEFLKVK 453 (473)
Q Consensus 436 ~~~~~~al~~l~~~l~~~ 453 (473)
.+......+++.+++++.
T Consensus 407 ~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 407 ERRMKVTQADFRKAKEKV 424 (438)
T ss_pred hcCCccCHHHHHHHHHHH
Confidence 223334455555555543
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=2.6e-30 Score=242.23 Aligned_cols=223 Identities=19% Similarity=0.294 Sum_probs=179.4
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc--
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-- 290 (473)
....+|++++|+++.|+... .+..|+.+++.|..|. |+++|||||||||||++|+|+|++++.|++.+..+++.
T Consensus 115 ~~~it~ddViGqEeAK~kcr-li~~yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCR-LIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHHH-HHHHHhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 34579999999999998874 4667999999887753 78999999999999999999999999999999998874
Q ss_pred ----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
....+++++..+. .|||+||||+|++.- +|+-+.. .+.....++.||..|||+.+. ++++.|+
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaL--dRryQel-------RGDVsEiVNALLTelDgi~en--eGVvtIa 259 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIAL--DRRYQEL-------RGDVSEIVNALLTELDGIKEN--EGVVTIA 259 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh--hhhHHHh-------cccHHHHHHHHHHhccCcccC--CceEEEe
Confidence 2467888888775 799999999999975 2321111 234567899999999999754 6699999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC-CCCHHHHHHHHhcC-------
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT-QVTPAEVAEQLMRN------- 436 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~t~a~i~~~l~~~------- 436 (473)
+||+|+.||||++. ||...|+|.+|+.++|..|++.|...-..+....+..+...+ ++|+.||.+-+++.
T Consensus 260 aTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 260 ATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred ecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999998866555555566665543 69999998877642
Q ss_pred CCH-HHHHHHHHHHHHH
Q 012016 437 DDP-ELVLNGLIEFLKV 452 (473)
Q Consensus 437 ~~~-~~al~~l~~~l~~ 452 (473)
+|. ...-+++..++++
T Consensus 338 ed~e~v~~edie~al~k 354 (368)
T COG1223 338 EDREKVEREDIEKALKK 354 (368)
T ss_pred hchhhhhHHHHHHHHHh
Confidence 222 2334556666654
No 24
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=2.4e-29 Score=279.36 Aligned_cols=209 Identities=22% Similarity=0.306 Sum_probs=175.0
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc---
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR--- 290 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~--- 290 (473)
+..+|++++|.+++|+.|.+.+..++..++.|.++|..+++|+|||||||||||++|+++|++++.+++.++.+++.
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999987752
Q ss_pred ---CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEe
Q 012016 291 ---SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFT 365 (473)
Q Consensus 291 ---~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 365 (473)
++..++.+|..+. .||||||||||.+++.++. . .......+.+++||..|||+... .+++||+|
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~--~-------~~~~~~~~~~~~lL~~ldg~~~~--~~v~vI~a 596 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGA--R-------FDTSVTDRIVNQLLTEMDGIQEL--SNVVVIAA 596 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCC--C-------CCccHHHHHHHHHHHHhhcccCC--CCEEEEEe
Confidence 3567888888764 6899999999999863321 1 11223567899999999998653 56999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC-CCCHHHHHHHH
Q 012016 366 TNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT-QVTPAEVAEQL 433 (473)
Q Consensus 366 TN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~t~a~i~~~l 433 (473)
||+|+.||||++||||||.+|++|+|+.++|.+||+.+..........++..++..+ ++|++||..+|
T Consensus 597 Tn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 597 TNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred CCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999887654332233344444433 69999998876
No 25
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=1.7e-29 Score=265.38 Aligned_cols=222 Identities=20% Similarity=0.260 Sum_probs=171.1
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc----
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR---- 290 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~---- 290 (473)
+.+|++|+|.+.+|+.+.+....|. ......|.++++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 4689999999999998877665553 335667999999999999999999999999999999999999987652
Q ss_pred --CchHHHHHHHHh--ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEec
Q 012016 291 --SNSDLRTLLVAT--ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTT 366 (473)
Q Consensus 291 --~~~~l~~l~~~~--~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 366 (473)
++..++++|..+ ..||||||||||.++..+.. .+......+.++.|+..|+.. ...++||+||
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~---------~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTT 367 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES---------KGDSGTTNRVLATFITWLSEK----KSPVFVVATA 367 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC---------CCCchHHHHHHHHHHHHHhcC----CCceEEEEec
Confidence 356788888754 47999999999998752111 122344678889999988853 2468999999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccC--CHHHHHHHHhcC-CCCHHHHHHHHhcC------C
Q 012016 367 NHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHI--LFEEIEELISTT-QVTPAEVAEQLMRN------D 437 (473)
Q Consensus 367 N~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~--l~~~i~~l~~~~-~~t~a~i~~~l~~~------~ 437 (473)
|+++.|||+++||||||..|+++.|+.++|.+|++.++...... ...++..++..+ ++|+|||...+... .
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~ 447 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE 447 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998764221 123455555533 79999998876431 1
Q ss_pred CHHHHHHHHHHHHHH
Q 012016 438 DPELVLNGLIEFLKV 452 (473)
Q Consensus 438 ~~~~al~~l~~~l~~ 452 (473)
......+++..+++.
T Consensus 448 ~~~lt~~dl~~a~~~ 462 (489)
T CHL00195 448 KREFTTDDILLALKQ 462 (489)
T ss_pred CCCcCHHHHHHHHHh
Confidence 223344555555543
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4e-28 Score=258.82 Aligned_cols=228 Identities=27% Similarity=0.390 Sum_probs=186.3
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc--
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-- 290 (473)
.+..+|++++|.++.|+.+.+.+..++..++.|.+.|..+++|+|||||||||||+||+|+|++++.+|+.++.+++.
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 445799999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
++..++++|..+. .||||||||+|.++..++. ..+....+.+++||..|||+... .++++|+
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~----------~~~~~~~r~~~~lL~~~d~~e~~--~~v~vi~ 383 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGP----------SEDGSGRRVVGQLLTELDGIEKA--EGVLVIA 383 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCC----------CCchHHHHHHHHHHHHhcCCCcc--CceEEEe
Confidence 4678899998876 7999999999999873321 11222368999999999998654 5599999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCH--HHHHHHHh-cCCCCHHHHHHHHhcC-----
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILF--EEIEELIS-TTQVTPAEVAEQLMRN----- 436 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~--~~i~~l~~-~~~~t~a~i~~~l~~~----- 436 (473)
|||+|+.+|||++||||||..|++|.|+.++|..++..++......+. -++..+++ ..+++++||...|...
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~ 463 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEAL 463 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999985443221 23333333 3359999998887531
Q ss_pred --C-CHHHHHHHHHHHHHH
Q 012016 437 --D-DPELVLNGLIEFLKV 452 (473)
Q Consensus 437 --~-~~~~al~~l~~~l~~ 452 (473)
. ..+..++++.++++.
T Consensus 464 ~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 464 REARRREVTLDDFLDALKK 482 (494)
T ss_pred HHhccCCccHHHHHHHHHh
Confidence 1 224556666666654
No 27
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=8.9e-29 Score=280.85 Aligned_cols=213 Identities=14% Similarity=0.122 Sum_probs=156.0
Q ss_pred chhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCc----------------------------
Q 012016 241 RKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSN---------------------------- 292 (473)
Q Consensus 241 ~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~---------------------------- 292 (473)
++..+.++|..+++|+||+||||||||+||+|+|.+.++|++.++++++...
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 4567788899999999999999999999999999999999999988765310
Q ss_pred ---------------------hHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHh
Q 012016 293 ---------------------SDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFI 349 (473)
Q Consensus 293 ---------------------~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~l 349 (473)
..++.+|..+. +||||+|||||++... .....+++.||+.|
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~----------------ds~~ltL~qLLneL 1761 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN----------------ESNYLSLGLLVNSL 1761 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC----------------ccceehHHHHHHHh
Confidence 12566676654 7999999999999641 11234689999999
Q ss_pred cccccC-CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCC---HHHHHHHHhc-CCC
Q 012016 350 DGLWSS-CGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHIL---FEEIEELIST-TQV 424 (473)
Q Consensus 350 dg~~~~-~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l---~~~i~~l~~~-~~~ 424 (473)
||.... ...+++||+|||+|+.|||||+||||||++|+++.|+..+|.+++...+......+ ..++..++.. .|+
T Consensus 1762 Dg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~Gf 1841 (2281)
T CHL00206 1762 SRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGS 1841 (2281)
T ss_pred ccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCC
Confidence 986432 23569999999999999999999999999999999999999988775432211111 1123444443 379
Q ss_pred CHHHHHHHHhc--------------CCCHHHHHHHHHHHHHHhhhcccccCccccccccc
Q 012016 425 TPAEVAEQLMR--------------NDDPELVLNGLIEFLKVKRKEDEDAKPRKIHEEST 470 (473)
Q Consensus 425 t~a~i~~~l~~--------------~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~e~~~ 470 (473)
|+||++.++-. ..+.+.|+...+..++.+-... +.+..++||.+|
T Consensus 1842 SGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~~~-~~~~ia~yEiGh 1900 (2281)
T CHL00206 1842 NARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSV-QDHGILFYQIGR 1900 (2281)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcccCc-chhhhhhhHHhH
Confidence 99999887631 1356777777776665432222 333457776654
No 28
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.96 E-value=9.6e-29 Score=205.42 Aligned_cols=97 Identities=47% Similarity=0.832 Sum_probs=93.6
Q ss_pred hCCHHHHHHHHHHHHhhhc-cCCCceEEEEecCCCCccchhHHHHHHHhccCCCccccceEEeeccCCCceEEecCCCce
Q 012016 39 LLPYEIQDYFYFRLRKFCN-RFSSQLTIVIDEHDGLAKNQIYDAAKVYLGKKTSPSVQRIKVSKLEKENHVNISMESDEQ 117 (473)
Q Consensus 39 ~~P~~l~~~~~~~~~~l~~-~~~~~~ti~i~e~~~~~~n~ly~a~~~YL~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~ 117 (473)
|||++||+++.+++++++. +++||+||+|+|++|+.+|++|+||++||+++++++++||++++++++++++++|++||+
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e~ 80 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGEE 80 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCCE
Confidence 6899999999999988776 899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeeeEEEEEEee
Q 012016 118 VVDVFNGIKLKWVLVCRQ 135 (473)
Q Consensus 118 v~D~f~G~~~~W~~~~~~ 135 (473)
|+|+|+||++||.+++.+
T Consensus 81 V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 81 VVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEECCEEEEEEEEccC
Confidence 999999999999999863
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.7e-29 Score=237.11 Aligned_cols=202 Identities=24% Similarity=0.347 Sum_probs=169.7
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc----
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR---- 290 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~---- 290 (473)
...|++++|.+..|+.|.+.+..+++-++.|..--+|| +|+|||||||||||+||+|+|.+.+-.|+.++.+++.
T Consensus 129 NVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred CCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 36789999999999999999999999999888655554 6999999999999999999999999999999998872
Q ss_pred --CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEec
Q 012016 291 --SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTT 366 (473)
Q Consensus 291 --~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 366 (473)
++.-+..+|..+. .|+||||||||.++..+. ++++...+++-..||.+|.|+-. ..++++|+++|
T Consensus 208 GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~----------enEseasRRIKTEfLVQMqGVG~-d~~gvLVLgAT 276 (439)
T KOG0739|consen 208 GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS----------ENESEASRRIKTEFLVQMQGVGN-DNDGVLVLGAT 276 (439)
T ss_pred ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC----------CCchHHHHHHHHHHHHhhhcccc-CCCceEEEecC
Confidence 3444567776664 689999999998876322 23455678899999999999854 34579999999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCC-HHHHHHHHhcC-CCCHHHHH
Q 012016 367 NHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHIL-FEEIEELISTT-QVTPAEVA 430 (473)
Q Consensus 367 N~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~t~a~i~ 430 (473)
|-|+.||.|++| ||+..|++|+|...+|..+++..++...|.+ ..++..|...+ ++|++||.
T Consensus 277 NiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDis 340 (439)
T KOG0739|consen 277 NIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDIS 340 (439)
T ss_pred CCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceE
Confidence 999999999999 9999999999999999999999999887766 44666666544 68888873
No 30
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=3.4e-28 Score=265.38 Aligned_cols=246 Identities=20% Similarity=0.303 Sum_probs=185.6
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc----
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR---- 290 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~---- 290 (473)
..+|+++.|.+..++++.+. ..++..++.|...|...++|+||+||||||||++++++|++++.+++.++++++.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i-~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHH-HHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 46799999999999888664 4567778888888988899999999999999999999999999999999987652
Q ss_pred --CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEec
Q 012016 291 --SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTT 366 (473)
Q Consensus 291 --~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 366 (473)
....++.+|..+. .||||||||||.++..+. ... .+.+.....++++||..|||+.+. ..+++|+||
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~--~~~-----~g~~~~~~~~ln~lL~~mdg~~~~--~~vivIaaT 297 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG--AGL-----GGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAAT 297 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccC--CCC-----CCCchHHHHHHHHHHHhhhcccCC--CCeeEEEec
Confidence 3456777787664 689999999999975221 110 122344567999999999998664 459999999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhc-CCCCHHHHHHHHhc-------CCC
Q 012016 367 NHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIST-TQVTPAEVAEQLMR-------NDD 438 (473)
Q Consensus 367 N~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~t~a~i~~~l~~-------~~~ 438 (473)
|+|+.||||++||||||++|++++|+.++|.+|++.++.........++..+... .++|+||+.+++-. .+.
T Consensus 298 N~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~ 377 (644)
T PRK10733 298 NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK 377 (644)
T ss_pred CChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999875433222334445543 37999999888742 222
Q ss_pred HHHHHHHHHHHHHHh-------h--hcccccCccccccccc
Q 012016 439 PELVLNGLIEFLKVK-------R--KEDEDAKPRKIHEEST 470 (473)
Q Consensus 439 ~~~al~~l~~~l~~~-------~--~~~~~~~~~~~~e~~~ 470 (473)
......++.+++.+. . ..+.+....++||.+|
T Consensus 378 ~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gh 418 (644)
T PRK10733 378 RVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGH 418 (644)
T ss_pred CcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHH
Confidence 223334444443322 1 1233456678888765
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-28 Score=235.25 Aligned_cols=210 Identities=26% Similarity=0.348 Sum_probs=176.1
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc-----
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR----- 290 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~----- 290 (473)
.+|+.+.|.-++..++++-+..++.+++.+.++|+.+|.|++||||||||||.+++++|..+|.+++.+..+.+.
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999988873
Q ss_pred -CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecC
Q 012016 291 -SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTN 367 (473)
Q Consensus 291 -~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 367 (473)
+..-+++.|..+. .|||||+||||++++-+ .. +....+...+++|..|+|.|||+..- ..+-+|+|||
T Consensus 209 EsaRlIRemf~yA~~~~pciifmdeiDAigGRr--~s-----e~Ts~dreiqrTLMeLlnqmdgfd~l--~rVk~ImatN 279 (388)
T KOG0651|consen 209 ESARLIRDMFRYAREVIPCIIFMDEIDAIGGRR--FS-----EGTSSDREIQRTLMELLNQMDGFDTL--HRVKTIMATN 279 (388)
T ss_pred cHHHHHHHHHHHHhhhCceEEeehhhhhhccEE--ec-----cccchhHHHHHHHHHHHHhhccchhc--ccccEEEecC
Confidence 2355777787775 68999999999997522 11 11233567789999999999998665 4589999999
Q ss_pred CCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC---ccccCCHHHHHHHHhcCCCCHHHHHHHHhcC
Q 012016 368 HKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG---IKEHILFEEIEELISTTQVTPAEVAEQLMRN 436 (473)
Q Consensus 368 ~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~---~~~~~l~~~i~~l~~~~~~t~a~i~~~l~~~ 436 (473)
+|+.|||+|+||||+|+.+++|.|+...|..+++-.-. ..+...++++..+.++ +..+++...|...
T Consensus 280 rpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~--f~gad~rn~~tEa 349 (388)
T KOG0651|consen 280 RPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDG--FNGADLRNVCTEA 349 (388)
T ss_pred CccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhc--cChHHHhhhcccc
Confidence 99999999999999999999999999999887664322 2234457778777775 8888888877654
No 32
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=1.4e-27 Score=237.02 Aligned_cols=194 Identities=18% Similarity=0.169 Sum_probs=143.7
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc-----
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR----- 290 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~----- 290 (473)
.+|+++.+.-.+-...++.+...+ .+++....|+.+|++++||||||||||++++++|+++|.+++.++.+++.
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi-~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHI-AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHH-HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 566666443333333333222111 23445557889999999999999999999999999999999999999873
Q ss_pred -CchHHHHHHHHhc-------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc--------c-
Q 012016 291 -SNSDLRTLLVATA-------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL--------W- 353 (473)
Q Consensus 291 -~~~~l~~l~~~~~-------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~--------~- 353 (473)
++..++++|..+. +||||||||||++++.++ .. ......+....+||+.||+. |
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~--~~-------~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~ 261 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG--TT-------QYTVNNQMVNGTLMNIADNPTNVSLGGDWR 261 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC--CC-------CcchHHHHHHHHHHHHhcCCcccccccccc
Confidence 4578999998764 599999999999986322 10 01112344458999998863 3
Q ss_pred -cCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC
Q 012016 354 -SSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT 422 (473)
Q Consensus 354 -~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~ 422 (473)
......++||+|||+|+.|||+|+||||||..+ ..|+.++|..|++.++.... ....++..+++..
T Consensus 262 ~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~-l~~~dv~~Lv~~f 328 (413)
T PLN00020 262 EKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDG-VSREDVVKLVDTF 328 (413)
T ss_pred ccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCC-CCHHHHHHHHHcC
Confidence 122356899999999999999999999999865 58999999999999887653 3367788877654
No 33
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=2.1e-27 Score=243.78 Aligned_cols=212 Identities=25% Similarity=0.320 Sum_probs=169.8
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc-
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR- 290 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~- 290 (473)
..+..+|++++|.++++++|.+.+..++.+++.|..+|..+++|+|||||||||||++++++|++++.+++.+....+.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 3455789999999999999999999999999999999999999999999999999999999999999999988766542
Q ss_pred -----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEE
Q 012016 291 -----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIV 363 (473)
Q Consensus 291 -----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI 363 (473)
....++.+|..+. .|+||||||+|.++..+ .... .+.+......+..+++.+|++... .++.||
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~--~~~~-----~~~~~~~~~~l~~ll~~ld~~~~~--~~v~vI 265 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKR--TDSG-----TSGDREVQRTLMQLLAELDGFDPR--GNVKVI 265 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcccc--ccCC-----CCccHHHHHHHHHHHHHhhCCCCC--CCEEEE
Confidence 1234556665543 68999999999987522 1111 112334467788899999987443 468999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcccc---CCHHHHHHHHhcCCCCHHHHHHHHh
Q 012016 364 FTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEH---ILFEEIEELISTTQVTPAEVAEQLM 434 (473)
Q Consensus 364 ~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~---~l~~~i~~l~~~~~~t~a~i~~~l~ 434 (473)
+|||+++.+|++++||||||..|+|+.|+.++|..|++.++..... ....++....+ +++++|+..+|.
T Consensus 266 ~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~--g~sg~dl~~l~~ 337 (364)
T TIGR01242 266 AATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTE--GASGADLKAICT 337 (364)
T ss_pred EecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcC--CCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999988754322 33455555443 599999987764
No 34
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-27 Score=234.10 Aligned_cols=218 Identities=20% Similarity=0.337 Sum_probs=177.8
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhc-CCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC---
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS--- 291 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g-~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~--- 291 (473)
.+|++|+|.+.+++.+.+.+..++++++.|...+ ..+++|+|||||||||||.+|+|+|++.|.+++.++.+.+.+
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 6899999999999999999999999999997433 256789999999999999999999999999999999988742
Q ss_pred --chH-HHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEec
Q 012016 292 --NSD-LRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTT 366 (473)
Q Consensus 292 --~~~-l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 366 (473)
... +..+|.-+. +|+||||||+|..+..| + ..++......-++|...-||+.+..+..++|+++|
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~---------s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT 238 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-R---------STDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT 238 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-c---------cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCC
Confidence 233 344444443 79999999999997633 1 13355566777888888999998877778999999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc---ccCCHHHHHHHHhcCCCCHHHHHHHHhcCCCHHHHH
Q 012016 367 NHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK---EHILFEEIEELISTTQVTPAEVAEQLMRNDDPELVL 443 (473)
Q Consensus 367 N~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~---~~~l~~~i~~l~~~~~~t~a~i~~~l~~~~~~~~al 443 (473)
|+|.+||.|++| ||...++++.|+.++|.+|++-+|..+ .+....+++.+.+ +||+.|+.++|.. .|+
T Consensus 239 NRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~--GySGSDLkelC~~-----Aa~ 309 (386)
T KOG0737|consen 239 NRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTE--GYSGSDLKELCRL-----AAL 309 (386)
T ss_pred CCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcC--CCcHHHHHHHHHH-----HhH
Confidence 999999999999 999999999999999999999999865 3455566666655 5999999999854 344
Q ss_pred HHHHHHHHH
Q 012016 444 NGLIEFLKV 452 (473)
Q Consensus 444 ~~l~~~l~~ 452 (473)
..+.+.++.
T Consensus 310 ~~ire~~~~ 318 (386)
T KOG0737|consen 310 RPIRELLVS 318 (386)
T ss_pred hHHHHHHHh
Confidence 444444444
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.5e-25 Score=242.88 Aligned_cols=214 Identities=21% Similarity=0.285 Sum_probs=174.1
Q ss_pred eccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEE
Q 012016 209 PVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYD 283 (473)
Q Consensus 209 ~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~ 283 (473)
+...+...+|++++|.+.++..+.+.+-.++.+++.|..+++.++||+|||||||||||++++|+|..+ +..++.
T Consensus 255 p~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffm 334 (1080)
T KOG0732|consen 255 PLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFM 334 (1080)
T ss_pred chhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhh
Confidence 344455578999999999999999999999999999999999999999999999999999999999988 344444
Q ss_pred cccccc------cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccC
Q 012016 284 LELTEL------RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSS 355 (473)
Q Consensus 284 l~~~~~------~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~ 355 (473)
-...+. ..+..++-+|..+. +|+|+|+||||-+.+.+... .........+.||..|||+.+.
T Consensus 335 rkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk----------qEqih~SIvSTLLaLmdGldsR 404 (1080)
T KOG0732|consen 335 RKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK----------QEQIHASIVSTLLALMDGLDSR 404 (1080)
T ss_pred hcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch----------HHHhhhhHHHHHHHhccCCCCC
Confidence 333332 24677888888775 79999999999998755332 1234567889999999999775
Q ss_pred CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHH-HHHHh-cCCCCHHHHHHHH
Q 012016 356 CGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEI-EELIS-TTQVTPAEVAEQL 433 (473)
Q Consensus 356 ~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i-~~l~~-~~~~t~a~i~~~l 433 (473)
+.++||++||+++.+||||+||||||+.++||+|+.+.|..|+...-.....+..... ..+.+ ..++-+|++..+|
T Consensus 405 --gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLC 482 (1080)
T KOG0732|consen 405 --GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALC 482 (1080)
T ss_pred --CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHH
Confidence 4599999999999999999999999999999999999999999987766555554433 33433 2368889987776
Q ss_pred h
Q 012016 434 M 434 (473)
Q Consensus 434 ~ 434 (473)
.
T Consensus 483 T 483 (1080)
T KOG0732|consen 483 T 483 (1080)
T ss_pred H
Confidence 3
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=6.5e-25 Score=244.03 Aligned_cols=208 Identities=26% Similarity=0.350 Sum_probs=168.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc---
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR--- 290 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~--- 290 (473)
+..+|++|+|.+++++.|.+.+..++..++.|..+|..+++|+|||||||||||++++++|++++.+++.+++.++.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999887652
Q ss_pred ---CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEe
Q 012016 291 ---SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFT 365 (473)
Q Consensus 291 ---~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 365 (473)
....++.+|..+. .++||||||||.+...++. .........++.|++.||++... ..++||+|
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~----------~~~~~~~~~~~~Ll~~ld~l~~~--~~vivI~a 320 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREE----------VTGEVEKRVVAQLLTLMDGLKGR--GRVIVIGA 320 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccC----------CcchHHHHHHHHHHHHhhccccC--CCEEEEee
Confidence 2356777887654 6799999999999753211 11123467889999999998654 45889999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhc-CCCCHHHHHHHH
Q 012016 366 TNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIST-TQVTPAEVAEQL 433 (473)
Q Consensus 366 TN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~t~a~i~~~l 433 (473)
||+++.+|++++|||||+..|+++.|+.++|.+|++.+...........+..+++. .+++++++..++
T Consensus 321 tn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~ 389 (733)
T TIGR01243 321 TNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALA 389 (733)
T ss_pred cCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999977654322112233334432 369999887764
No 37
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-24 Score=225.98 Aligned_cols=207 Identities=25% Similarity=0.349 Sum_probs=178.9
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc----
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL---- 289 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~---- 289 (473)
++.+ ++++|.......+.+.+..++..+..+...|.++++|+|+|||||||||.+++|+|++.+..++.++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6667 88899999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred --cCchHHHHHHHHhc--c-CceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 290 --RSNSDLRTLLVATA--N-RSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 290 --~~~~~l~~l~~~~~--~-~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
.+++.|++.|..+. + |+||+|||+|.+.+.+.. .+....++.++|+..|||... ..++|+|+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~-----------~~~~e~Rv~sqlltL~dg~~~--~~~vivl~ 325 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREG-----------ADDVESRVVSQLLTLLDGLKP--DAKVIVLA 325 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccc-----------cchHHHHHHHHHHHHHhhCcC--cCcEEEEE
Confidence 35788999998875 4 899999999999873321 122367899999999999864 35699999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHh-cCCCCHHHHHHHHhc
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIS-TTQVTPAEVAEQLMR 435 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~-~~~~t~a~i~~~l~~ 435 (473)
+||+|+.|||+++| ||||..+++..|+..+|.+|++.+.....+....++..+.. ..++++||+...|-.
T Consensus 326 atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~e 396 (693)
T KOG0730|consen 326 ATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCRE 396 (693)
T ss_pred ecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999888766654455555554 458999999988853
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.5e-25 Score=221.89 Aligned_cols=210 Identities=21% Similarity=0.274 Sum_probs=177.8
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc--
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-- 290 (473)
..+..|++++|.+..|+.+.+.+..++.+++.|..+ .++.+|+||.||||||||+|++|+|.+.+..++.++.+++.
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 344789999999999999999999999988888765 45678999999999999999999999999999999999883
Q ss_pred ----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
++.-++.+|.-+. +|+|+||||||.++..+ . ++.+..+.+...++|...++..+...+.++||+
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R--s--------~~e~e~srr~ktefLiq~~~~~s~~~drvlvig 295 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR--S--------DNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIG 295 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc--C--------CcccccchhhhhHHHhhhccccCCCCCeEEEEe
Confidence 2244555665443 89999999999998733 1 234566788999999999999988888899999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCC-HHHHHHHHhcC-CCCHHHHHHHHhc
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHIL-FEEIEELISTT-QVTPAEVAEQLMR 435 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~t~a~i~~~l~~ 435 (473)
|||.|+.+|.|++| ||...+++|.|+.++|..+|.+++....+.+ ..+++.+++.+ +++..||.++|-.
T Consensus 296 aTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 296 ATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred cCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 99999999999999 9999999999999999999999998775555 36777776643 6999999888853
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-23 Score=213.87 Aligned_cols=209 Identities=22% Similarity=0.387 Sum_probs=156.4
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHh----chhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-ceEEccc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVK----RKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-DVYDLEL 286 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~----~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~-~~~~l~~ 286 (473)
..+.-.|++++- ..+.++.-..+.+.+. -++.-.++|++.-+|+|||||||||||.+|+-|..-|+. +--.++.
T Consensus 212 i~Pdf~Fe~mGI-GGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 212 INPDFNFESMGI-GGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred cCCCCChhhccc-ccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 344456777631 1223333332332222 367788899999999999999999999999999999965 4455666
Q ss_pred ccc------cCchHHHHHHHHhc----------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhc
Q 012016 287 TEL------RSNSDLRTLLVATA----------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFID 350 (473)
Q Consensus 287 ~~~------~~~~~l~~l~~~~~----------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ld 350 (473)
.++ .+++.+|++|..+. .--||++||||+++..|+.. .+........+++||.-||
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~--------~g~TGVhD~VVNQLLsKmD 362 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM--------AGSTGVHDTVVNQLLSKMD 362 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC--------CCCCCccHHHHHHHHHhcc
Confidence 654 46788999998774 22699999999998633221 1234456788999999999
Q ss_pred ccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc-------cccCCHHHHHHHHhcCC
Q 012016 351 GLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI-------KEHILFEEIEELISTTQ 423 (473)
Q Consensus 351 g~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~-------~~~~l~~~i~~l~~~~~ 423 (473)
|+..- ++++||+-||+++.+|+||+||||+..++++++|+.+.|.+|++.+-.. ......++++.+..+
T Consensus 363 GVeqL--NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKN-- 438 (744)
T KOG0741|consen 363 GVEQL--NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKN-- 438 (744)
T ss_pred cHHhh--hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcC--
Confidence 98664 5699999999999999999999999999999999999999988765432 234556677777665
Q ss_pred CCHHHHHHHH
Q 012016 424 VTPAEVAEQL 433 (473)
Q Consensus 424 ~t~a~i~~~l 433 (473)
+|+||+..++
T Consensus 439 fSGAEleglV 448 (744)
T KOG0741|consen 439 FSGAELEGLV 448 (744)
T ss_pred CchhHHHHHH
Confidence 9999996654
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.7e-22 Score=199.96 Aligned_cols=227 Identities=18% Similarity=0.184 Sum_probs=168.7
Q ss_pred ecCCchhHHHHhhhHHHHHHHHHHHhhcceeeEeeecccccccCCCCcceeccCCCCCCccccccchHHHHHHHHHHHHH
Q 012016 159 FPKKYKDVVIGSYLPCVEKEAKSVQQESKTIKILTVNYNNLYCNWTDAWIPVNLDHPATFETLAMEQEQKTKIMQDLERF 238 (473)
Q Consensus 159 f~~~~~~~~l~~yl~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~f 238 (473)
|.++.-.+|.++|+..++-....+++..+...-|....+.....-.+ -..........|+++++.+.+++.|.+....-
T Consensus 296 YTtkeg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~-~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aT 374 (630)
T KOG0742|consen 296 YTTKEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQG-SRSASSRGKDPLEGVILHPSLEKRIEDLAIAT 374 (630)
T ss_pred eeccccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhh-hHhhhhcCCCCcCCeecCHHHHHHHHHHHHHh
Confidence 45666778999999999999988888877665555543321110000 11122233456999999999999886543322
Q ss_pred HhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc-----CchHHHHHHHHhc---cCceEEE
Q 012016 239 VKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-----SNSDLRTLLVATA---NRSILVV 310 (473)
Q Consensus 239 l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-----~~~~l~~l~~~~~---~~sIL~i 310 (473)
- ..+....+-|++|||||||||||++++.||.+.|+++-.+...++. ....++++|..+. ++-+|||
T Consensus 375 a-----NTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFI 449 (630)
T KOG0742|consen 375 A-----NTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFI 449 (630)
T ss_pred c-----ccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEe
Confidence 2 2233456778999999999999999999999999999988888873 3467888988764 4578899
Q ss_pred eccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 012016 311 EDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSY 390 (473)
Q Consensus 311 DdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~ 390 (473)
||.|+.+. .|.+..+ +...+..|+.||-- .|-.+ ..+++|++||+|++||.|+-. |||..|+||+
T Consensus 450 DEADAFLc--eRnktym-------SEaqRsaLNAlLfR-TGdqS---rdivLvlAtNrpgdlDsAV~D--Ride~veFpL 514 (630)
T KOG0742|consen 450 DEADAFLC--ERNKTYM-------SEAQRSALNALLFR-TGDQS---RDIVLVLATNRPGDLDSAVND--RIDEVVEFPL 514 (630)
T ss_pred hhhHHHHH--Hhchhhh-------cHHHHHHHHHHHHH-hcccc---cceEEEeccCCccchhHHHHh--hhhheeecCC
Confidence 99999987 4444333 23456778887733 33222 468999999999999999999 9999999999
Q ss_pred CCHHHHHHHHHHHhCc
Q 012016 391 CTPSGFKLLAANYLGI 406 (473)
Q Consensus 391 p~~~~r~~l~~~~l~~ 406 (473)
|..++|..|+..|+..
T Consensus 515 PGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 515 PGEEERFKLLNLYLNK 530 (630)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999999998863
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=3.4e-19 Score=167.01 Aligned_cols=190 Identities=19% Similarity=0.239 Sum_probs=126.2
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCc
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSN 292 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~ 292 (473)
-.|.+|++++|+++++..+.-.+.....+. ..-.++|||||||+||||||..||++++.++..++...+...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 457899999999998887644443332211 123479999999999999999999999999999988777777
Q ss_pred hHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc-----cCCC---------C
Q 012016 293 SDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW-----SSCG---------D 358 (473)
Q Consensus 293 ~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-----~~~~---------~ 358 (473)
.++..++.....+.|||||||+.+ ++.....|+..|+... ..+. .
T Consensus 90 ~dl~~il~~l~~~~ILFIDEIHRl---------------------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 90 GDLAAILTNLKEGDILFIDEIHRL---------------------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp HHHHHHHHT--TT-EEEECTCCC-----------------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred HHHHHHHHhcCCCcEEEEechhhc---------------------cHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 889999988889999999999987 2344455777776432 1111 1
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHH-HHHHhcCCCCHHHHHHHH
Q 012016 359 ERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEI-EELISTTQVTPAEVAEQL 433 (473)
Q Consensus 359 ~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i-~~l~~~~~~t~a~i~~~l 433 (473)
..-+|++|++...|.+.|+. ||....++.+.+.++..+|+.+........+.++. ..++....-||.-.-++|
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 35689999999999999999 99999999999999999999987666555554443 334444556666444443
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=6.5e-20 Score=159.79 Aligned_cols=123 Identities=32% Similarity=0.538 Sum_probs=100.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc------CchHHHHHHHHhc--c-CceEEEeccccccccccCCccc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR------SNSDLRTLLVATA--N-RSILVVEDIDCTIDLQDRLPAD 326 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~------~~~~l~~l~~~~~--~-~sIL~iDdiD~l~~~~~r~~~~ 326 (473)
+||+||||||||++++++|+.++.+++.+++..+. ....+..++..+. . ++||+|||+|.+.... .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~-- 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---Q-- 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---S--
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---c--
Confidence 69999999999999999999999999999998875 2356777777653 4 7999999999997632 0
Q ss_pred cCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 012016 327 IAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSY 390 (473)
Q Consensus 327 ~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~ 390 (473)
..........+..|++.++..... ..+++||+|||.++.++|+++| |||+..|++|.
T Consensus 76 -----~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 76 -----PSSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp -----TSSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred -----cccccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 112345677889999999987553 3469999999999999999998 89999999974
No 43
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.77 E-value=9.1e-18 Score=170.08 Aligned_cols=189 Identities=18% Similarity=0.219 Sum_probs=139.1
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCch
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNS 293 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~ 293 (473)
.|.+|++++|.++.++.+...+...... ..+++++|||||||||||++++++|++++.++...+...+....
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~ 91 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPG 91 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChH
Confidence 4689999999999988876665533221 23356899999999999999999999999998887776666667
Q ss_pred HHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc-----cC---------CCCc
Q 012016 294 DLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW-----SS---------CGDE 359 (473)
Q Consensus 294 ~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-----~~---------~~~~ 359 (473)
.+..++.....+.||||||||.+.. ... ..|.+.|+... .. .-..
T Consensus 92 ~l~~~l~~l~~~~vl~IDEi~~l~~------------------~~~---e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 92 DLAAILTNLEEGDVLFIDEIHRLSP------------------VVE---EILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred HHHHHHHhcccCCEEEEecHhhcch------------------HHH---HHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 7888888888899999999998732 011 12333333221 00 0123
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCH-HHHHHHHhcCCCCHHHHHHHH
Q 012016 360 RIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILF-EEIEELISTTQVTPAEVAEQL 433 (473)
Q Consensus 360 ~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~~~t~a~i~~~l 433 (473)
..+|++||++..++++|++ ||+..++|+.|+.+++.+++.+.......... +.+..++...+-+|..+...|
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l 223 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLL 223 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHH
Confidence 6789999999999999988 99999999999999999999988776544443 345555655566665554444
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=3.1e-17 Score=160.90 Aligned_cols=177 Identities=16% Similarity=0.254 Sum_probs=124.3
Q ss_pred ccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCC---ceeEEeCCCCCCHHHHHHHHHHhc-------CCceEEcccc
Q 012016 218 FETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYL-------NFDVYDLELT 287 (473)
Q Consensus 218 f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~---rg~LL~GPpGtGKT~la~alA~~l-------~~~~~~l~~~ 287 (473)
+++++|.+++|+.|.+.+. ++.......+.|.... .++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~-~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYA-WIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 6789999999999977654 3333344445665432 468999999999999999999875 2356666666
Q ss_pred cccC------chHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceE
Q 012016 288 ELRS------NSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERI 361 (473)
Q Consensus 288 ~~~~------~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~i 361 (473)
++.+ ...++.+|..+ .++||||||+|.+.. + +........+..|++.|+.. ....+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~--~-----------~~~~~~~~~i~~Ll~~~e~~----~~~~~ 145 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLAR--G-----------GEKDFGKEAIDTLVKGMEDN----RNEFV 145 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-cCCEEEEechhhhcc--C-----------CccchHHHHHHHHHHHHhcc----CCCEE
Confidence 5521 34456666554 468999999999842 0 11122355677888888764 23456
Q ss_pred EEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHH
Q 012016 362 IVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEI 415 (473)
Q Consensus 362 iI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i 415 (473)
+|++++..+ .++|+|.+ ||+.+|+||.++.+++..|+.+++......+.++.
T Consensus 146 vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a 202 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA 202 (261)
T ss_pred EEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH
Confidence 666554332 47899998 99999999999999999999999876544444443
No 45
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.75 E-value=4.6e-17 Score=154.64 Aligned_cols=180 Identities=19% Similarity=0.319 Sum_probs=148.2
Q ss_pred CCcceeccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCc
Q 012016 204 TDAWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFD 280 (473)
Q Consensus 204 ~~~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~ 280 (473)
++...+|....|..+++|+|.+.+|+.|++....|+.+. +..++||||++|||||++++|+.+++ |+.
T Consensus 12 ~~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GLR 82 (249)
T PF05673_consen 12 SGYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGLR 82 (249)
T ss_pred CCcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCce
Confidence 345788988999999999999999999999999999743 36789999999999999999999977 788
Q ss_pred eEEcccccccCchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCce
Q 012016 281 VYDLELTELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDER 360 (473)
Q Consensus 281 ~~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ 360 (473)
++.++-.++..-..+...+...+.+-|||+||+. +. ........|-..|||--...++++
T Consensus 83 lIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLs--Fe------------------~~d~~yk~LKs~LeGgle~~P~Nv 142 (249)
T PF05673_consen 83 LIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLS--FE------------------EGDTEYKALKSVLEGGLEARPDNV 142 (249)
T ss_pred EEEECHHHhccHHHHHHHHhcCCCCEEEEecCCC--CC------------------CCcHHHHHHHHHhcCccccCCCcE
Confidence 9999998888878888888878889999999974 22 123456778888899888888999
Q ss_pred EEEEecCCCCCCCccc----------cCC-----------CceeeEEEeCCCCHHHHHHHHHHHhCccccCCH
Q 012016 361 IIVFTTNHKEKLDPAL----------LRP-----------GRMDVHVHMSYCTPSGFKLLAANYLGIKEHILF 412 (473)
Q Consensus 361 iiI~tTN~~~~ld~aL----------lrp-----------gRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~ 412 (473)
+|.+|+|+..-+.... +.| .||...|.|..|+.++..+|+.+++...+..+.
T Consensus 143 liyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~ 215 (249)
T PF05673_consen 143 LIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELD 215 (249)
T ss_pred EEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 9999999854433221 111 299999999999999999999999976554443
No 46
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.8e-18 Score=166.07 Aligned_cols=179 Identities=18% Similarity=0.268 Sum_probs=135.8
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhh-cCCCCceeEEeCCCCCCHHHHHHHHHHhc---------CCceEEccc
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLEL 286 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~-g~~~~rg~LL~GPpGtGKT~la~alA~~l---------~~~~~~l~~ 286 (473)
-|++|+-+..+|++++.+...-+.-.+..... =+.|.|-+|||||||||||+|++|+|+.| .-.++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 47788999999999999877666533322211 25788899999999999999999999998 234567777
Q ss_pred cccc------CchHHHHHHHHhc-------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc
Q 012016 287 TELR------SNSDLRTLLVATA-------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW 353 (473)
Q Consensus 287 ~~~~------~~~~l~~l~~~~~-------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 353 (473)
.++. +..-+..+|.+.. .-..++|||++.+...|..... ..+....-+.++.+|.+||.+.
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S------~~EpsDaIRvVNalLTQlDrlK 293 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASS------RNEPSDAIRVVNALLTQLDRLK 293 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhc------CCCCchHHHHHHHHHHHHHHhc
Confidence 6662 3344555555542 2356789999999864322111 1234456789999999999996
Q ss_pred cCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 354 SSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 354 ~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
.. .+++|.+|+|-.+.+|.|+.. |-|.+.++++|+.+++..|++..+.
T Consensus 294 ~~--~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 294 RY--PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred cC--CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 65 569999999999999999999 9999999999999999999988764
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.74 E-value=3.7e-17 Score=163.75 Aligned_cols=182 Identities=18% Similarity=0.214 Sum_probs=130.5
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHH
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLR 296 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~ 296 (473)
+|++++|.++.++.+...+......+ ..+.+++||||||||||++++++|++++.++..+..........+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 68999999998888776664433221 2245799999999999999999999999988877766555566777
Q ss_pred HHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc--------------cCCCCceEE
Q 012016 297 TLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW--------------SSCGDERII 362 (473)
Q Consensus 297 ~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~--------------~~~~~~~ii 362 (473)
..+.....+.+|||||+|.+.. .....|++.|+... .......++
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~---------------------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSP---------------------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCH---------------------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 7777778889999999998842 11222444443211 001123788
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCC-HHHHHHHHhcCCCCHHHH
Q 012016 363 VFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHIL-FEEIEELISTTQVTPAEV 429 (473)
Q Consensus 363 I~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~~~t~a~i 429 (473)
|++||++..+++++++ ||...++++.++.++..+++....+...... .+.+..++...+-.|..+
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~ 198 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIA 198 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchH
Confidence 9999999999999998 9999999999999999999988776443333 233444444444444433
No 48
>CHL00181 cbbX CbbX; Provisional
Probab=99.74 E-value=4.4e-17 Score=161.59 Aligned_cols=175 Identities=18% Similarity=0.244 Sum_probs=126.6
Q ss_pred cccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCc---eeEEeCCCCCCHHHHHHHHHHhcC-------CceEEccccc
Q 012016 219 ETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKR---GYLLYGPPGTGKSSLIAAMANYLN-------FDVYDLELTE 288 (473)
Q Consensus 219 ~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~r---g~LL~GPpGtGKT~la~alA~~l~-------~~~~~l~~~~ 288 (473)
++++|.+++|++|.+.+. ++.....+.+.|..++. ++||+||||||||++|+++|+.+. -+++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~-~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAA-LLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 379999999999988654 45555666777875542 489999999999999999999762 2577777665
Q ss_pred cc------CchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEE
Q 012016 289 LR------SNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERII 362 (473)
Q Consensus 289 ~~------~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ii 362 (473)
+. +......++..+ .++||||||+|.+... + +...........|+..|+... .+++|
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~--~----------~~~~~~~e~~~~L~~~me~~~----~~~~v 164 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYKP--D----------NERDYGSEAIEILLQVMENQR----DDLVV 164 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhccC--C----------CccchHHHHHHHHHHHHhcCC----CCEEE
Confidence 42 223345555553 5689999999988531 0 112234667788888887532 45777
Q ss_pred EEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHH
Q 012016 363 VFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFE 413 (473)
Q Consensus 363 I~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ 413 (473)
|++++... .++|+|.+ ||+.+|+|+.++.+++.+|+..++......+.+
T Consensus 165 I~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~ 218 (287)
T CHL00181 165 IFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTP 218 (287)
T ss_pred EEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCCh
Confidence 77775421 34699999 999999999999999999999998765444433
No 49
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.73 E-value=5.7e-17 Score=160.77 Aligned_cols=174 Identities=16% Similarity=0.240 Sum_probs=128.1
Q ss_pred cc-ccccchHHHHHHHHHHHHHHhchhHHhhhcCCC---CceeEEeCCCCCCHHHHHHHHHHhcC-------CceEEccc
Q 012016 218 FE-TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAW---KRGYLLYGPPGTGKSSLIAAMANYLN-------FDVYDLEL 286 (473)
Q Consensus 218 f~-~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~---~rg~LL~GPpGtGKT~la~alA~~l~-------~~~~~l~~ 286 (473)
++ +++|.+++|+.|.+.+. ++..++.+.+.|... ..++||+||||||||++|+++|+.+. -+++.+++
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~-~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAA-LLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred HHHhccCHHHHHHHHHHHHH-HHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 44 68999999999877554 466667777788764 44899999999999999999998873 26777776
Q ss_pred cccc------CchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCce
Q 012016 287 TELR------SNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDER 360 (473)
Q Consensus 287 ~~~~------~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ 360 (473)
.++. +...+..+|..+ .+++|||||++.+... + ............|++.|+.. ..++
T Consensus 99 ~~l~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~--~----------~~~~~~~~~~~~Ll~~le~~----~~~~ 161 (284)
T TIGR02880 99 DDLVGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYRP--D----------NERDYGQEAIEILLQVMENQ----RDDL 161 (284)
T ss_pred HHHhHhhcccchHHHHHHHHHc-cCcEEEEechhhhccC--C----------CccchHHHHHHHHHHHHhcC----CCCE
Confidence 6542 224455666554 5699999999988431 0 11123456778888988753 2457
Q ss_pred EEEEecCCC--C---CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCC
Q 012016 361 IIVFTTNHK--E---KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHIL 411 (473)
Q Consensus 361 iiI~tTN~~--~---~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l 411 (473)
+||++++.. + .++|+|.+ ||+.+|+||.++.+++..|+.+++......+
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l 215 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRF 215 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhcccc
Confidence 777776543 2 35899999 9999999999999999999999987654333
No 50
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=1.9e-16 Score=151.43 Aligned_cols=184 Identities=18% Similarity=0.225 Sum_probs=140.6
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCch
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNS 293 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~ 293 (473)
.|.+|++++|++++|+.+.-.+.....+.+ ...++|||||||.|||+||..||+++|.++-..+...+....
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e--------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g 92 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGE--------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG 92 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCC--------CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh
Confidence 478999999999888887555554433322 245799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc-----cCCC---------Cc
Q 012016 294 DLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW-----SSCG---------DE 359 (473)
Q Consensus 294 ~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-----~~~~---------~~ 359 (473)
++..++.....+.|||||||+.+.+ ..-.-|-..|+.+. ...+ ..
T Consensus 93 DlaaiLt~Le~~DVLFIDEIHrl~~---------------------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 93 DLAAILTNLEEGDVLFIDEIHRLSP---------------------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred hHHHHHhcCCcCCeEEEehhhhcCh---------------------hHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 9999999999999999999999843 12222334443321 0111 23
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCH-HHHHHHHhcCCCCHHH
Q 012016 360 RIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILF-EEIEELISTTQVTPAE 428 (473)
Q Consensus 360 ~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~~~t~a~ 428 (473)
.-+|++|.+...|...|+. ||....++.+.+.++...|+.+.-..-+..+. +....++....-||.-
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRI 219 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHH
Confidence 5689999999999999998 99999999999999999999987765544443 3444445555677763
No 51
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=8.9e-16 Score=165.45 Aligned_cols=156 Identities=16% Similarity=0.292 Sum_probs=120.8
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++|+|++.+++.|.+.+. . ...++.|||+||+|||||++++++|+.++.
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~----~--------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALD----G--------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHh----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 456899999999988877655432 1 223568999999999999999999998853
Q ss_pred -----------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 280 -----------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 280 -----------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
+++.++..+-.+...+++++.... ...|+||||+|.+. ....
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT---------------------~~A~ 136 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT---------------------NHAF 136 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC---------------------HHHH
Confidence 455665554344456777776542 35799999999873 3457
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE 408 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~ 408 (473)
+.||+.|+.. ...++||++||.+++|.+.|++ || .++.|..++.++....+...+..+.
T Consensus 137 NALLKtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~Eg 195 (830)
T PRK07003 137 NAMLKTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEER 195 (830)
T ss_pred HHHHHHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcC
Confidence 8889888853 3468999999999999999998 88 6899999999999888888776553
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=99.68 E-value=8.6e-16 Score=163.37 Aligned_cols=162 Identities=21% Similarity=0.360 Sum_probs=123.5
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS 291 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~ 291 (473)
...|.+|++|+|+++.++.+.+.+..+.+ |. +++++|||||||||||++|+++|++++++++.++.++...
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLK--------GK-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 56789999999999999998888776653 22 2679999999999999999999999999999999988766
Q ss_pred chHHHHHHHHhc--------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEE
Q 012016 292 NSDLRTLLVATA--------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIV 363 (473)
Q Consensus 292 ~~~l~~l~~~~~--------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI 363 (473)
...+..++.... .+.||+|||+|.+.. ......+..|++.++. ....+|
T Consensus 78 ~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~-----------------~~d~~~~~aL~~~l~~------~~~~iI 134 (482)
T PRK04195 78 ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG-----------------NEDRGGARAILELIKK------AKQPII 134 (482)
T ss_pred HHHHHHHHHHhhccCcccCCCCeEEEEecCccccc-----------------ccchhHHHHHHHHHHc------CCCCEE
Confidence 555665554332 467999999998843 0122345667777663 124577
Q ss_pred EecCCCCCCCc-cccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc
Q 012016 364 FTTNHKEKLDP-ALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE 408 (473)
Q Consensus 364 ~tTN~~~~ld~-aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~ 408 (473)
+++|.+..+++ .|.+ |+ ..|+|+.|+..+...++...+..++
T Consensus 135 li~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~eg 177 (482)
T PRK04195 135 LTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEG 177 (482)
T ss_pred EeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 78898888877 5544 44 6799999999999988888775443
No 53
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=8.4e-16 Score=159.96 Aligned_cols=157 Identities=16% Similarity=0.311 Sum_probs=117.0
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC------------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 279 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------ 279 (473)
...|.+|++++|++.+...|...+. . | ..+..|||+||||||||++|+++|+.++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~----~-------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALK----S-------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 3457899999999888776554433 1 1 13457999999999999999999999865
Q ss_pred ------------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHH
Q 012016 280 ------------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVT 341 (473)
Q Consensus 280 ------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (473)
+++.++...-.+...++++..... ...|+||||+|.+. ...
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls---------------------~~A 137 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT---------------------DQS 137 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC---------------------HHH
Confidence 355555543333455665554332 34699999999872 456
Q ss_pred HHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc
Q 012016 342 LSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE 408 (473)
Q Consensus 342 ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~ 408 (473)
++.||..|+. ++..+++|++|+.++.|.+++++ |+ .+++|..++.++....+.+.+..++
T Consensus 138 ~NALLKtLEE----Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Eg 197 (484)
T PRK14956 138 FNALLKTLEE----PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIEN 197 (484)
T ss_pred HHHHHHHhhc----CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcC
Confidence 7888988875 34568999999999999999998 88 4789999999888887777765543
No 54
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=3.6e-16 Score=166.47 Aligned_cols=156 Identities=18% Similarity=0.321 Sum_probs=121.4
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC------------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 279 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------ 279 (473)
..+|.+|++|+|++.+++.|.+.+. . ...++.|||+||+|||||++++++|+.++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~----~--------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALE----Q--------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHH----h--------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 3467999999999988887665443 1 123568999999999999999999999865
Q ss_pred -----------------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCcc
Q 012016 280 -----------------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQ 336 (473)
Q Consensus 280 -----------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~ 336 (473)
+++.++..+-.+...+++++.... ...|+||||+|.+.
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------------- 137 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------------- 137 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-------------------
Confidence 455565554344566777766542 35799999999872
Q ss_pred chhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 337 QNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 337 ~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
....+.||+.|+. ...+++||++||.+++|.+.+++ |+ .++.|..++.++....+...+..+
T Consensus 138 --~~AaNALLKTLEE----PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~E 199 (700)
T PRK12323 138 --NHAFNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEE 199 (700)
T ss_pred --HHHHHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHc
Confidence 4567889998885 34568999999999999999998 87 689999999999888888776544
No 55
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.9e-15 Score=159.12 Aligned_cols=154 Identities=19% Similarity=0.351 Sum_probs=113.9
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC------------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 279 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------ 279 (473)
...|.+|++++|++.+++.+.. .+... ..+.++|||||||||||++|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~----~i~~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIIN----ALKKN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHH----HHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 3467999999999887665544 33321 23567999999999999999999999864
Q ss_pred ------------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHH
Q 012016 280 ------------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVT 341 (473)
Q Consensus 280 ------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (473)
+++.++.+.-.+...++++..... ...||||||+|.+. ...
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt---------------------~~a 133 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT---------------------KEA 133 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH---------------------HHH
Confidence 466666654334455665554432 45799999999873 334
Q ss_pred HHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 342 LSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 342 ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
+..||..++.. +..+++|++|+.+..+++++++ |+. .++|..++.++...++...+.
T Consensus 134 ~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 134 FNALLKTLEEP----PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred HHHHHHHHHhC----CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHH
Confidence 67788888753 3457778888788899999998 874 799999999998888777654
No 56
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.66 E-value=1.2e-15 Score=170.63 Aligned_cols=159 Identities=25% Similarity=0.249 Sum_probs=115.3
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC--------
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS-------- 291 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~-------- 291 (473)
++.|.+++|+.|.+.+...... +...+..+||+||||||||++++++|+.++.+++.++++.+.+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 4778888998888766533221 2223347999999999999999999999999999887665422
Q ss_pred -------chHHHHHHHHhc-cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc----ccC----
Q 012016 292 -------NSDLRTLLVATA-NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL----WSS---- 355 (473)
Q Consensus 292 -------~~~l~~l~~~~~-~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~----~~~---- 355 (473)
...+.+.|..+. .+.||||||||.+... .+. ...+.||..||.. ...
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~--------------~~~---~~~~aLl~~ld~~~~~~f~d~~~~ 456 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSS--------------FRG---DPASALLEVLDPEQNNAFSDHYLD 456 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCc--------------cCC---CHHHHHHHhcCHHhcCccccccCC
Confidence 234445555433 4569999999998531 011 1245677766631 000
Q ss_pred ---CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 356 ---CGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 356 ---~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
.-.++++|+|||.++.++|+|++ ||+ .|+|+.|+.+++..|+++|+.
T Consensus 457 ~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 457 VPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred ceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence 01358899999999999999999 996 789999999999999998873
No 57
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.65 E-value=1.1e-15 Score=152.53 Aligned_cols=151 Identities=25% Similarity=0.349 Sum_probs=110.6
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCch
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNS 293 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~ 293 (473)
.|.+|++++|++.+.-+ -.-+.+.+.. ..-.+.+|||||||||||+|+.||+..+.+|..++.... +..
T Consensus 19 RP~~lde~vGQ~HLlg~-~~~lrr~v~~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGE-GKPLRRAVEA---------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-GVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCC-CchHHHHHhc---------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-cHH
Confidence 57899999998765422 0112222221 113479999999999999999999999999999987654 557
Q ss_pred HHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE-ec
Q 012016 294 DLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF-TT 366 (473)
Q Consensus 294 ~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~-tT 366 (473)
+++.++..+. ++.|||||||+.+- +.-...||-.|+. +.+++|+ ||
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRfn---------------------K~QQD~lLp~vE~------G~iilIGATT 140 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRFN---------------------KAQQDALLPHVEN------GTIILIGATT 140 (436)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEehhhhcC---------------------hhhhhhhhhhhcC------CeEEEEeccC
Confidence 8888887763 47999999999872 2223446666653 3467776 55
Q ss_pred CCC-CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 367 NHK-EKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 367 N~~-~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
..| -.|.+||+. |. ++.++...+.++.++++.+-+.
T Consensus 141 ENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 141 ENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred CCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHh
Confidence 555 689999998 76 5788999999999999988443
No 58
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.8e-15 Score=160.08 Aligned_cols=155 Identities=17% Similarity=0.307 Sum_probs=118.9
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++|+|++.+++.|...+. + ...+..|||+||||||||++|+++|+.++.
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~----~--------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE----R--------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 456899999999988777655443 1 123578999999999999999999999864
Q ss_pred -----------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 280 -----------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 280 -----------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
+++.++.++-.+...+++++.... ...|+||||+|.+. ....
T Consensus 77 sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS---------------------~~A~ 135 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS---------------------THSF 135 (702)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC---------------------HHHH
Confidence 566666654445566777776542 45799999999872 3467
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+.||..|+.. +..+.+|++|+.+..+.+.+++ |+ .+++|..++.++....+...+..+
T Consensus 136 NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 136 NALLKTLEEP----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred HHHHHHHhcC----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHc
Confidence 7888888753 3457888888889999989887 87 578999999999888887776554
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.8e-15 Score=152.14 Aligned_cols=156 Identities=15% Similarity=0.262 Sum_probs=113.7
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++++|++..++.+.+.+. . ...++.|||+||||||||++|+++|+.+..
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~----~--------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLS----L--------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHH----c--------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 356899999999988877654332 1 123568999999999999999999999852
Q ss_pred -----------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 280 -----------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 280 -----------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
+++.++.++-.....+++++.... ...|++|||+|.+. ....
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~---------------------~~a~ 136 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS---------------------RHSF 136 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC---------------------HHHH
Confidence 344444433223355666665432 34699999999872 3455
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE 408 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~ 408 (473)
+.||..++.. +....+|++|+.++.+.+++.. |+ ..++|+.++.++....+...+...+
T Consensus 137 naLLk~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g 195 (363)
T PRK14961 137 NALLKTLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKES 195 (363)
T ss_pred HHHHHHHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 6788888753 3457788888888899999987 77 5789999999999888887665443
No 60
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=6.1e-15 Score=154.99 Aligned_cols=155 Identities=12% Similarity=0.231 Sum_probs=120.0
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL--------------- 277 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l--------------- 277 (473)
..|.+|++|+|++.+++.+.+.+. . ...+++|||+||||+|||++|+++|+.+
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~----~--------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFT----L--------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 456899999999987776543322 1 1236789999999999999999999865
Q ss_pred ---------CCceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 278 ---------NFDVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 278 ---------~~~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
+.+++.++.++-.+...+++++.... +..|++|||+|.+. ...+
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls---------------------~~A~ 133 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS---------------------NSAF 133 (491)
T ss_pred HHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC---------------------HHHH
Confidence 35677788776556677888776653 45799999999772 3467
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+.||..|+.. ++.+++|++|+.++++.++++. |+ ..++|..++.++....+...+..+
T Consensus 134 NaLLK~LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~E 191 (491)
T PRK14964 134 NALLKTLEEP----APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKE 191 (491)
T ss_pred HHHHHHHhCC----CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHc
Confidence 8899998853 3568888889999999999998 77 568999999999888877766544
No 61
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=8.6e-15 Score=154.92 Aligned_cols=156 Identities=17% Similarity=0.281 Sum_probs=117.5
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC------------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 279 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------ 279 (473)
...|.+|++++|++.+.+.+...+. . ...+.+|||+||||||||++|+++|+.++.
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~----~--------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTIL----N--------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 3567999999999988776544332 1 123568999999999999999999999854
Q ss_pred ----------------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccc
Q 012016 280 ----------------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQ 337 (473)
Q Consensus 280 ----------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~ 337 (473)
+++.++..+-.+...+++++..+. ...|++|||+|.+.
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-------------------- 141 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-------------------- 141 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------------
Confidence 344444443334567777776653 45799999999772
Q ss_pred hhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 338 NKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 338 ~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
...++.|+..|+. ++..+++|++|+.++++++++++ |+ ..++|..++.++...++...+..+
T Consensus 142 -~~a~naLLk~LEe----pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~e 203 (507)
T PRK06645 142 -KGAFNALLKTLEE----PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQE 203 (507)
T ss_pred -HHHHHHHHHHHhh----cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHc
Confidence 3457788888874 34568888888889999999988 77 578999999999888888777544
No 62
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.62 E-value=1.2e-14 Score=146.46 Aligned_cols=157 Identities=15% Similarity=0.218 Sum_probs=113.3
Q ss_pred cceeccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 206 AWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 206 ~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.|.. ...|.+|++++|+++.++.+...+. . | ..+..+||+||||+|||++++++|++++.+++.++
T Consensus 10 ~w~~--kyrP~~~~~~~~~~~~~~~l~~~~~----~-------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~ 75 (316)
T PHA02544 10 MWEQ--KYRPSTIDECILPAADKETFKSIVK----K-------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVN 75 (316)
T ss_pred ccee--ccCCCcHHHhcCcHHHHHHHHHHHh----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEec
Confidence 4543 5667999999999988887665443 1 1 23557788999999999999999999999999999
Q ss_pred cccccCchHHHHHHH----Hh---ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCC
Q 012016 286 LTELRSNSDLRTLLV----AT---ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGD 358 (473)
Q Consensus 286 ~~~~~~~~~l~~l~~----~~---~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 358 (473)
++. .....++..+. .. ..+.+|+|||+|.+.. ......|...++.. ..
T Consensus 76 ~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------------------~~~~~~L~~~le~~----~~ 130 (316)
T PHA02544 76 GSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------------------ADAQRHLRSFMEAY----SK 130 (316)
T ss_pred cCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------------------HHHHHHHHHHHHhc----CC
Confidence 887 22233333221 11 3578999999997721 11223344445543 23
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHh
Q 012016 359 ERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYL 404 (473)
Q Consensus 359 ~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l 404 (473)
...+|+|||.+..+++++++ ||. .+.|+.|+.+++..++..++
T Consensus 131 ~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 131 NCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred CceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 46788999999999999998 885 78999999999887776543
No 63
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=6.3e-15 Score=156.73 Aligned_cols=155 Identities=17% Similarity=0.315 Sum_probs=117.7
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++|+|++.+++.|.+.+. . ...+..|||+||||||||++|+++|+.++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~----~--------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALD----Q--------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHH----h--------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 456899999999988887765543 1 123568999999999999999999999853
Q ss_pred -----------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 280 -----------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 280 -----------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
+++.++..+-.+-..+++++.... +..|++|||+|.+. ....
T Consensus 78 ~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls---------------------~~a~ 136 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS---------------------GHSF 136 (509)
T ss_pred HHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC---------------------HHHH
Confidence 366677665455567777776543 34699999999873 3457
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+.||..|+.. ++.+++|++|+.+.++.+.++. |+ ..++|..++.++....+...+..+
T Consensus 137 naLLk~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~e 194 (509)
T PRK14958 137 NALLKTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEE 194 (509)
T ss_pred HHHHHHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence 8899888853 3568888888889999989887 77 578899988888776666665443
No 64
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1e-14 Score=157.55 Aligned_cols=154 Identities=18% Similarity=0.324 Sum_probs=117.6
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC--------------
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-------------- 279 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~-------------- 279 (473)
.|.+|++|+|++.+++.|.+.+. . ...+..|||+||+|||||++|+++|+.++.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~----~--------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALD----L--------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 56899999999988876654333 1 123567999999999999999999999855
Q ss_pred ----------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHH
Q 012016 280 ----------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLS 343 (473)
Q Consensus 280 ----------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls 343 (473)
+++.++..+-.+...+++++.... ...|+||||+|.+ +....+
T Consensus 79 C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L---------------------s~~a~N 137 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML---------------------SRHSFN 137 (647)
T ss_pred HHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC---------------------CHHHHH
Confidence 345555543233456676665542 3469999999987 345788
Q ss_pred HHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 344 GFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 344 ~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
.||..|+. +++.+++|++|+.+..|.+.++. |+ .+++|..++.++....+.+.+..+
T Consensus 138 ALLKtLEE----Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e 194 (647)
T PRK07994 138 ALLKTLEE----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAE 194 (647)
T ss_pred HHHHHHHc----CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 99999985 34568888888899999999998 86 789999999999888888776443
No 65
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.7e-15 Score=155.89 Aligned_cols=159 Identities=21% Similarity=0.210 Sum_probs=117.1
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHH---
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLR--- 296 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~--- 296 (473)
+=.|.+++|++|++++.--...+ .--..-++|.||||+|||||+++||+.+|..|+.+++..+.++.+++
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 34577889999998775332221 11123588999999999999999999999999999999997766553
Q ss_pred ------------HHHHHh-ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccccc---------
Q 012016 297 ------------TLLVAT-ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWS--------- 354 (473)
Q Consensus 297 ------------~l~~~~-~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~--------- 354 (473)
+-+..+ ....+++|||||.+... ..+ .-.+.||..+|--..
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss--------------~rG---DPaSALLEVLDPEQN~~F~DhYLe 459 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSS--------------FRG---DPASALLEVLDPEQNNTFSDHYLE 459 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCCeEEeechhhccCC--------------CCC---ChHHHHHhhcCHhhcCchhhcccc
Confidence 222222 25689999999998541 011 112456655542110
Q ss_pred CC--CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 355 SC--GDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 355 ~~--~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
-+ =.++++|+|+|..+.++..|+. ||. .|+++-.+.++...|+++||=
T Consensus 460 v~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 460 VPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred CccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcc
Confidence 00 0359999999999999999999 996 799999999999999999984
No 66
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.62 E-value=2.5e-14 Score=133.93 Aligned_cols=178 Identities=20% Similarity=0.296 Sum_probs=146.8
Q ss_pred CcceeccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCce
Q 012016 205 DAWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDV 281 (473)
Q Consensus 205 ~~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~ 281 (473)
+...+++-.+|..+.+|+|.+.+|+.+++....|+.+. +..++||+|..|||||+|++|+-++. +..+
T Consensus 46 ~~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrL 116 (287)
T COG2607 46 GYLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRL 116 (287)
T ss_pred CcccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeE
Confidence 34568888888999999999999999999999999743 36789999999999999999999988 6789
Q ss_pred EEcccccccCchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceE
Q 012016 282 YDLELTELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERI 361 (473)
Q Consensus 282 ~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~i 361 (473)
+.++-.++.+-..|.+.+...+.+-|||+||+-- . ........|-..+||-.+..+.+|+
T Consensus 117 VEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSF--e------------------~gd~~yK~LKs~LeG~ve~rP~NVl 176 (287)
T COG2607 117 VEVDKEDLATLPDLVELLRARPEKFILFCDDLSF--E------------------EGDDAYKALKSALEGGVEGRPANVL 176 (287)
T ss_pred EEEcHHHHhhHHHHHHHHhcCCceEEEEecCCCC--C------------------CCchHHHHHHHHhcCCcccCCCeEE
Confidence 9999999888888889999899999999999842 1 1234556677888998888888999
Q ss_pred EEEecCCCCCCCcccc--------------------CCCceeeEEEeCCCCHHHHHHHHHHHhCccccCC
Q 012016 362 IVFTTNHKEKLDPALL--------------------RPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHIL 411 (473)
Q Consensus 362 iI~tTN~~~~ld~aLl--------------------rpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l 411 (473)
|.+|+|+...|+.... -..||...+.|..|+.++..+|+.+|........
T Consensus 177 ~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 177 FYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred EEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 9999998655542221 1239999999999999999999999986554433
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=99.62 E-value=1.2e-14 Score=146.78 Aligned_cols=155 Identities=15% Similarity=0.230 Sum_probs=111.0
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC-----CceEEccc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FDVYDLEL 286 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~-----~~~~~l~~ 286 (473)
...|.+|++++|++++.+.|.. ++... . ..++|||||||||||++|.++|+++. ..++.++.
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~----~~~~~-------~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQV----IARDG-------N--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHH----HHhcC-------C--CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 5678999999999887766543 33221 1 23699999999999999999999982 34666776
Q ss_pred ccccCchHHHHHHHHh---------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCC
Q 012016 287 TELRSNSDLRTLLVAT---------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCG 357 (473)
Q Consensus 287 ~~~~~~~~l~~l~~~~---------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~ 357 (473)
++..+...++..+... ....|++|||+|.+.. ...+.|+..|+.. +
T Consensus 73 sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~---------------------~aq~aL~~~lE~~----~ 127 (319)
T PLN03025 73 SDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS---------------------GAQQALRRTMEIY----S 127 (319)
T ss_pred cccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH---------------------HHHHHHHHHHhcc----c
Confidence 6654444555554321 2357999999998832 2345566666643 2
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 358 DERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 358 ~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
....+|++||....+.++|+. |+ ..++|+.|+.++....+...+..+
T Consensus 128 ~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~e 174 (319)
T PLN03025 128 NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAE 174 (319)
T ss_pred CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHc
Confidence 335677889988999999998 76 479999999999888877766544
No 68
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.4e-14 Score=158.89 Aligned_cols=155 Identities=18% Similarity=0.308 Sum_probs=114.8
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCc------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------------ 280 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~------------ 280 (473)
..|.+|++|+|++.+++.|.+. +... ..+..|||+||||||||++|+++|+.++..
T Consensus 10 yRP~tFddIIGQe~Iv~~Lkna----I~~~--------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNA----LTQQ--------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHH----HHhC--------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 3568999999999888775443 3221 235679999999999999999999998653
Q ss_pred ------------eEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 281 ------------VYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 281 ------------~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
++.++..+..+...++++..... ...|+||||+|.+ ....+
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L---------------------T~eAq 136 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML---------------------SRSSF 136 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc---------------------CHHHH
Confidence 23333332223345666654432 3579999999987 35678
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+.||..|+.. +..+++|++|+.+.+|.++++. |+ .+++|..++.++....+.+.+..+
T Consensus 137 NALLKtLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 137 NALLKTLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred HHHHHHHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHc
Confidence 8999999853 3457788888889999999998 87 689999999999888888776544
No 69
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.4e-14 Score=152.64 Aligned_cols=162 Identities=20% Similarity=0.289 Sum_probs=114.8
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCch------
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNS------ 293 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~------ 293 (473)
+=.|..++|++|++.+.--. -.|-.-..-+.|+||||+|||+++++||..||..|+.++...+.+..
T Consensus 412 DHYgm~dVKeRILEfiAV~k-------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGK-------LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHh-------hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 44567889999988654111 11223344689999999999999999999999999999988875433
Q ss_pred ---------HHHHHHHHh-ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHH------HHhcccccCC-
Q 012016 294 ---------DLRTLLVAT-ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFL------NFIDGLWSSC- 356 (473)
Q Consensus 294 ---------~l~~l~~~~-~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL------~~ldg~~~~~- 356 (473)
.+.+.+... ....+++|||||.+.. +.++.....+-.+| ||+|..-.-+
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~--------------g~qGDPasALLElLDPEQNanFlDHYLdVp~ 550 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS--------------GHQGDPASALLELLDPEQNANFLDHYLDVPV 550 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC--------------CCCCChHHHHHHhcChhhccchhhhcccccc
Confidence 333444444 3678999999999952 22222232222222 2222221100
Q ss_pred -CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 357 -GDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 357 -~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
=..+++|+|.|..+.++|+|+. ||. .|+++-...++...|+.+||-
T Consensus 551 DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 551 DLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred chhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 0358999999999999999999 996 699999999999999999985
No 70
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.61 E-value=3e-14 Score=146.92 Aligned_cols=177 Identities=17% Similarity=0.209 Sum_probs=122.5
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCc---------------
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD--------------- 280 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~--------------- 280 (473)
..|++|+|++.+++.+.+.+.... ..+...+...+++|||+||||+|||++|+++|+.+...
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~---~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAAR---ADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhcc---ccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 358999999999998877665332 23444555668899999999999999999999977432
Q ss_pred --------eEEccccc-ccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHH
Q 012016 281 --------VYDLELTE-LRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGF 345 (473)
Q Consensus 281 --------~~~l~~~~-~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~L 345 (473)
++.+.... ...-..+++++.... ...|+||||+|.+. ....+.|
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~---------------------~~aanaL 137 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT---------------------ERAANAL 137 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC---------------------HHHHHHH
Confidence 23333221 123456777776553 34699999999883 2345778
Q ss_pred HHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcCCCC
Q 012016 346 LNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTTQVT 425 (473)
Q Consensus 346 L~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~t 425 (473)
|..|+.. +.+.++|++|+.++.+.|++++ |+ ..++|+.|+.++....+....+. ..+.+..++.-.+-+
T Consensus 138 Lk~LEep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~~~----~~~~a~~la~~s~G~ 206 (394)
T PRK07940 138 LKAVEEP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRDGV----DPETARRAARASQGH 206 (394)
T ss_pred HHHhhcC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhcCC----CHHHHHHHHHHcCCC
Confidence 9888753 3457777777779999999998 87 68999999999987777643322 233344444444444
Q ss_pred HH
Q 012016 426 PA 427 (473)
Q Consensus 426 ~a 427 (473)
+.
T Consensus 207 ~~ 208 (394)
T PRK07940 207 IG 208 (394)
T ss_pred HH
Confidence 44
No 71
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.61 E-value=1.4e-14 Score=151.17 Aligned_cols=153 Identities=22% Similarity=0.313 Sum_probs=110.6
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCc
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSN 292 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~ 292 (473)
-.|.+|++++|++..... ...+...+.+. ...+++|+||||||||++|+++|+.++.+++.++.... +.
T Consensus 6 ~RP~~l~d~vGq~~~v~~-~~~L~~~i~~~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~~ 74 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGP-GKPLRRMIEAG---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-GV 74 (413)
T ss_pred hCCCCHHHhcCcHHHhCc-chHHHHHHHcC---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-cH
Confidence 457899999998876544 11122233221 13489999999999999999999999999999887653 34
Q ss_pred hHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEec
Q 012016 293 SDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTT 366 (473)
Q Consensus 293 ~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 366 (473)
..++.++.... .+.||||||+|.+. ......|+..++. ..+++|++|
T Consensus 75 ~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~---------------------~~~q~~LL~~le~------~~iilI~at 127 (413)
T PRK13342 75 KDLREVIEEARQRRSAGRRTILFIDEIHRFN---------------------KAQQDALLPHVED------GTITLIGAT 127 (413)
T ss_pred HHHHHHHHHHHHhhhcCCceEEEEechhhhC---------------------HHHHHHHHHHhhc------CcEEEEEeC
Confidence 45666665542 56899999999873 2234556766653 235666544
Q ss_pred --CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 367 --NHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 367 --N~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
|....++++|++ |+ ..+.|+.++.++...++...+..
T Consensus 128 t~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 128 TENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred CCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 334689999998 88 67999999999999999887653
No 72
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.3e-14 Score=154.40 Aligned_cols=154 Identities=16% Similarity=0.309 Sum_probs=117.6
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC---------------
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN--------------- 278 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~--------------- 278 (473)
.|.+|++++|++.+.+.+.+.+.. ...++.||||||+|||||++|+++|+.++
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 468999999999888776655441 12467899999999999999999999874
Q ss_pred ---------CceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHH
Q 012016 279 ---------FDVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLS 343 (473)
Q Consensus 279 ---------~~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls 343 (473)
.+++.++.++..+-..++++..... ..-|++|||+|.+. ....+
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt---------------------~~a~n 137 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS---------------------TGAFN 137 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC---------------------HHHHH
Confidence 4566666654444456777666543 45799999999873 34677
Q ss_pred HHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 344 GFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 344 ~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
.||..++.. +..+++|++|+.++.+++++++ |+. .++|+.|+.++....+...+...
T Consensus 138 aLLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~e 194 (559)
T PRK05563 138 ALLKTLEEP----PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKE 194 (559)
T ss_pred HHHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHc
Confidence 889888753 3568888888889999999988 874 68999999999888777766544
No 73
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.60 E-value=3.4e-14 Score=145.19 Aligned_cols=156 Identities=18% Similarity=0.324 Sum_probs=115.1
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++++|++..++.+.+.+. . ...++.||||||||+|||++++++|+.+..
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~----~--------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIK----N--------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 457899999999988887766443 1 123568999999999999999999998742
Q ss_pred -----------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 280 -----------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 280 -----------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
+++.++.....+...+++++..+. .+.|++|||+|.+. ....
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~---------------------~~~~ 134 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS---------------------KSAF 134 (355)
T ss_pred HHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC---------------------HHHH
Confidence 344444432223345666666543 34699999999772 2356
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE 408 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~ 408 (473)
+.|+..++.. +...++|++||.++.+.+++.+ |+ ..++|+.|+.++...++..++...+
T Consensus 135 ~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g 193 (355)
T TIGR02397 135 NALLKTLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEG 193 (355)
T ss_pred HHHHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 7788888753 3457888888999999999988 87 4789999999999888888776544
No 74
>PRK06893 DNA replication initiation factor; Validated
Probab=99.60 E-value=2.2e-14 Score=138.05 Aligned_cols=165 Identities=11% Similarity=0.183 Sum_probs=103.0
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 210 VNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 210 ~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
+....+.+||++++.+.. .+...+..- + .....+.++||||||||||+|++|+|+++ +..+.++++
T Consensus 7 ~~~~~~~~fd~f~~~~~~--~~~~~~~~~------~---~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNL--LLLDSLRKN------F---IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChH--HHHHHHHHH------h---hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 445667899999976532 222222111 1 11123468999999999999999999986 455555555
Q ss_pred ccccCchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEec
Q 012016 287 TELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTT 366 (473)
Q Consensus 287 ~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 366 (473)
.... ....+.+....+..+|+|||++.+.. .......+..+++ ..... +..++|.|+
T Consensus 76 ~~~~--~~~~~~~~~~~~~dlLilDDi~~~~~----------------~~~~~~~l~~l~n---~~~~~--~~~illits 132 (229)
T PRK06893 76 SKSQ--YFSPAVLENLEQQDLVCLDDLQAVIG----------------NEEWELAIFDLFN---RIKEQ--GKTLLLISA 132 (229)
T ss_pred HHhh--hhhHHHHhhcccCCEEEEeChhhhcC----------------ChHHHHHHHHHHH---HHHHc--CCcEEEEeC
Confidence 4321 12234455566778999999998742 1112233444444 33222 234555555
Q ss_pred C-CCCCCC---ccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc
Q 012016 367 N-HKEKLD---PALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE 408 (473)
Q Consensus 367 N-~~~~ld---~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~ 408 (473)
| .|..++ |+|.+..+.+..++++.|+.+.+..++++.....+
T Consensus 133 ~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 133 DCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred CCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 4 565554 88888444567899999999999999997765443
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.4e-14 Score=156.04 Aligned_cols=156 Identities=17% Similarity=0.311 Sum_probs=117.5
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++|+|++.+++.|.+.+. . ...+++|||+||+|||||++|+++|+.++.
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~----~--------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALD----E--------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 456899999999988887666544 1 133578999999999999999999998753
Q ss_pred -----------ceEEcccccccCchHHHHHHHHh------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 280 -----------DVYDLELTELRSNSDLRTLLVAT------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 280 -----------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
+++.++..+-.+...+++++... ....|+||||+|.+. ...+
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls---------------------~~A~ 136 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS---------------------KSAF 136 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC---------------------HHHH
Confidence 33444444333445677777643 245799999999762 3456
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE 408 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~ 408 (473)
+.||..|+.. .+.+++|++|+.+.++.+.++. |+ ..+.|+.++.++....+...+..++
T Consensus 137 NALLKtLEEP----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEg 195 (709)
T PRK08691 137 NAMLKTLEEP----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEK 195 (709)
T ss_pred HHHHHHHHhC----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 7889888853 3457888899999999999886 87 5788999999998888887776543
No 76
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.6e-14 Score=154.09 Aligned_cols=155 Identities=16% Similarity=0.310 Sum_probs=116.2
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++++|++.+.+.|.+.+ ... ..+..|||+||+|||||++++++|+.++.
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l----~~~--------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNAL----TQQ--------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHH----HcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 45689999999888777655533 321 23568999999999999999999999853
Q ss_pred ----------------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccc
Q 012016 280 ----------------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQ 337 (473)
Q Consensus 280 ----------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~ 337 (473)
+++.++..+-.+...+++++.... ...|++|||+|.+.
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-------------------- 137 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-------------------- 137 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------------
Confidence 355555544334456777776543 34699999999873
Q ss_pred hhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 338 NKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 338 ~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
....+.||..|+.. ++..++|++|+.+.++.+.++. |+ .+++|..++.++....+...+..+
T Consensus 138 -~~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~e 199 (618)
T PRK14951 138 -NTAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAE 199 (618)
T ss_pred -HHHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHc
Confidence 34577888888753 3567888888889999989887 77 689999999999888887766544
No 77
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.6e-14 Score=149.86 Aligned_cols=155 Identities=21% Similarity=0.378 Sum_probs=114.9
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++|+|++.+++.|...+. . ...+..+|||||||||||++|+++|+.+..
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~----~--------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALR----Q--------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 456899999999988777655443 2 123567899999999999999999998842
Q ss_pred ----------ceEEcccccccCchHHHHHHHHh------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHH
Q 012016 280 ----------DVYDLELTELRSNSDLRTLLVAT------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLS 343 (473)
Q Consensus 280 ----------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls 343 (473)
+++.++.....+...++++.... ..+.||||||+|.+ ....++
T Consensus 76 c~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l---------------------s~~a~n 134 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM---------------------SKSAFN 134 (504)
T ss_pred hHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECcccc---------------------CHHHHH
Confidence 25555554333344555554332 24679999999866 235677
Q ss_pred HHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 344 GFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 344 ~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
.|+..|+.. +...++|++||.+..+.+++.+ |+. +++|..++.++....+...+..+
T Consensus 135 aLLk~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~e 191 (504)
T PRK14963 135 ALLKTLEEP----PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAE 191 (504)
T ss_pred HHHHHHHhC----CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHc
Confidence 888888753 3457888889999999999988 774 79999999999888888766544
No 78
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2.5e-14 Score=152.71 Aligned_cols=155 Identities=14% Similarity=0.301 Sum_probs=115.3
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC--------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------------- 278 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~-------------- 278 (473)
..|.+|++++|++.+++.+.+.+. . ...+++|||+||||+|||++|+++|+.+.
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~----~--------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAIL----N--------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 467899999999988877655432 1 12357899999999999999999999874
Q ss_pred ----------CceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 279 ----------FDVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 279 ----------~~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
.+++.++..+..+...++.+..... ...|++|||+|.+. ....
T Consensus 78 sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt---------------------~~A~ 136 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS---------------------TSAW 136 (605)
T ss_pred HHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC---------------------HHHH
Confidence 2455555544334455676665432 35699999999872 2345
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+.||..|+.. ++..++|++|+.+..+.+++++ |+. .++|+.++.++....+...+...
T Consensus 137 NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~ke 194 (605)
T PRK05896 137 NALLKTLEEP----PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKE 194 (605)
T ss_pred HHHHHHHHhC----CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHc
Confidence 7888888853 3468888888999999999998 875 79999999999887777765443
No 79
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.6e-14 Score=157.86 Aligned_cols=156 Identities=19% Similarity=0.298 Sum_probs=116.8
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC------------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 279 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------ 279 (473)
...|.+|++|+|++.+++.|...+. . ....+.||||||+|||||++++++|+.|..
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~----~--------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALD----S--------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----h--------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 4567999999999988877655443 1 123467999999999999999999999952
Q ss_pred --------------ceEEcccccccCchHHHHHHHHh------ccCceEEEeccccccccccCCccccCCCCCCCccchh
Q 012016 280 --------------DVYDLELTELRSNSDLRTLLVAT------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNK 339 (473)
Q Consensus 280 --------------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~ 339 (473)
+++.++..+......++++.... ....|+||||+|.|. .
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt---------------------~ 134 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT---------------------P 134 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC---------------------H
Confidence 34555544433445566654332 245799999999883 4
Q ss_pred HHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 340 VTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 340 ~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
...+.||+.|+.. ....+||++|+.+++|.++|+. |+ .+++|..++.++...++...+..+
T Consensus 135 ~a~NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 135 QGFNALLKIVEEP----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred HHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHc
Confidence 5678899999864 3568888888999999999987 77 589999999999888888776443
No 80
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.5e-14 Score=154.33 Aligned_cols=155 Identities=17% Similarity=0.312 Sum_probs=114.8
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCc-----------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD----------- 280 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~----------- 280 (473)
...|.+|++|+|++.+++.+...+. . ...++.||||||+|+|||++|+++|+.+...
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~----~--------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIK----S--------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 3467899999999988877665543 1 1246789999999999999999999988432
Q ss_pred ----------eEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHH
Q 012016 281 ----------VYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSG 344 (473)
Q Consensus 281 ----------~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~ 344 (473)
++.++...-.+...++++...+. ...|++|||+|.+. ....+.
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT---------------------~~A~NA 137 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS---------------------KSAFNA 137 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC---------------------HHHHHH
Confidence 23333322123345666665543 45799999999873 346788
Q ss_pred HHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 345 FLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 345 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
||..|+.. ++.+++|++|+.++.|.+++++ |+. +++|..++.++....+...+..
T Consensus 138 LLKtLEEP----P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~k 192 (725)
T PRK07133 138 LLKTLEEP----PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEK 192 (725)
T ss_pred HHHHhhcC----CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHH
Confidence 99988853 4568888888999999999998 884 8999999999988777765543
No 81
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.6e-14 Score=151.59 Aligned_cols=156 Identities=23% Similarity=0.366 Sum_probs=116.7
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC--------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------------- 278 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~-------------- 278 (473)
..|.+|++|+|++.+++.|...+. . ...+..|||+||+|||||++|+++|+.++
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~----~--------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALD----A--------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 456899999999888777655433 2 12356799999999999999999999875
Q ss_pred ------------CceEEcccccccCchHHHHHHHHh------ccCceEEEeccccccccccCCccccCCCCCCCccchhH
Q 012016 279 ------------FDVYDLELTELRSNSDLRTLLVAT------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKV 340 (473)
Q Consensus 279 ------------~~~~~l~~~~~~~~~~l~~l~~~~------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 340 (473)
.+++.++.++..+-..++++.... ...-|+||||+|.+. ..
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt---------------------~~ 133 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT---------------------TA 133 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC---------------------HH
Confidence 245555554443445566554433 245799999999872 34
Q ss_pred HHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc
Q 012016 341 TLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE 408 (473)
Q Consensus 341 ~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~ 408 (473)
..+.||..|+.. +..+++|++|+.++++.++++. |+ .+++|..++.++....+..++..++
T Consensus 134 A~NALLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~eg 194 (584)
T PRK14952 134 GFNALLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEG 194 (584)
T ss_pred HHHHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 678899998853 3568889988999999999998 75 6899999999998888877666543
No 82
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=5.5e-14 Score=149.78 Aligned_cols=155 Identities=17% Similarity=0.319 Sum_probs=113.4
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++++|++.+++.+...+. . ...+..|||+||||||||++|+++|+.+..
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~----~--------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALE----T--------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 356899999999988877655433 1 123567999999999999999999998853
Q ss_pred -----------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 280 -----------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 280 -----------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
+++.++.....+...+++++.... ...|++|||+|.+. ....
T Consensus 78 sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls---------------------~~a~ 136 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS---------------------KQSF 136 (546)
T ss_pred HHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc---------------------HHHH
Confidence 455555433333345555554432 45799999999872 3467
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+.||..|+.. ++.+++|++|+.+..+.++++. |+ ..++|..++.++....+...+..+
T Consensus 137 naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~e 194 (546)
T PRK14957 137 NALLKTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKE 194 (546)
T ss_pred HHHHHHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHc
Confidence 7899988853 3457778777778889888887 77 689999999999877777665443
No 83
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=3e-14 Score=152.47 Aligned_cols=154 Identities=18% Similarity=0.331 Sum_probs=115.4
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC--------------
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-------------- 279 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~-------------- 279 (473)
.|.+|++|+|++.+++.+.+.+. . ...+..|||+||||+|||++|+++|+.++.
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~----~--------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALE----Q--------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHH----c--------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 56899999999988887655443 1 123568999999999999999999999854
Q ss_pred ----------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHH
Q 012016 280 ----------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLS 343 (473)
Q Consensus 280 ----------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls 343 (473)
+++.++.+.-.....+++++.... ...|+||||+|.+. ....+
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls---------------------~~a~n 137 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS---------------------KSAFN 137 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC---------------------HHHHH
Confidence 344455443334456777766542 35799999999872 34677
Q ss_pred HHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 344 GFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 344 ~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
.||..|+.. ++.+++|++|+.++.+.+.++. |+ .+++|..++.++....+...+..+
T Consensus 138 aLLK~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~e 194 (527)
T PRK14969 138 AMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQE 194 (527)
T ss_pred HHHHHHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHc
Confidence 899998863 3567888888889899888887 77 689999999999887777766443
No 84
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=9.6e-14 Score=142.84 Aligned_cols=156 Identities=19% Similarity=0.350 Sum_probs=112.8
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC------------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 279 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------ 279 (473)
...|.+|++++|++..++.+.+.+. . ...+++||||||||+|||++++++|+.+..
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~----~--------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIE----N--------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 3567899999999988776655443 1 123578999999999999999999998743
Q ss_pred ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc
Q 012016 280 DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW 353 (473)
Q Consensus 280 ~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 353 (473)
.++.++.....+...+++++..+. .+.||+|||+|.+. ...++.|+..++..
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~---------------------~~~~~~ll~~le~~- 135 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS---------------------SAAFNAFLKTLEEP- 135 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC---------------------HHHHHHHHHHHhCC-
Confidence 233444333333456777766432 45799999999763 23467788887752
Q ss_pred cCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 354 SSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 354 ~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+...++|++|+.+..+.+++.+ |+. .++++.|+.++...++...+...
T Consensus 136 ---~~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~ 183 (367)
T PRK14970 136 ---PAHAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKE 183 (367)
T ss_pred ---CCceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHc
Confidence 3456778888888999999987 664 68999999999887777665543
No 85
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.57 E-value=3.9e-14 Score=157.73 Aligned_cols=158 Identities=18% Similarity=0.268 Sum_probs=114.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceEE
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 283 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~ 283 (473)
.|..++.++|.++....+++.+ .++ -+.+++|+||||||||++++++|+.+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L----~~~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVL----CRR---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHH----hcC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 4567899999887777655433 222 25689999999999999999999987 788999
Q ss_pred cccccccC--------chHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc
Q 012016 284 LELTELRS--------NSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW 353 (473)
Q Consensus 284 l~~~~~~~--------~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 353 (473)
++++.+.. +..++.++..+. .++||||||||.+.+..... + ......+-|+..+.
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---------~---~~~~~~~~L~~~l~--- 308 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS---------G---GSMDASNLLKPALS--- 308 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC---------C---ccHHHHHHHHHHHh---
Confidence 99877642 257788887764 47899999999997521100 0 01112223334332
Q ss_pred cCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 354 SSCGDERIIVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 354 ~~~~~~~iiI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
.+++.+|++||..+ ..|+||.| ||. .|+++.|+.+++..|++....
T Consensus 309 ---~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 309 ---SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred ---CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 14688888888643 57999999 997 799999999999999996554
No 86
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.56 E-value=4e-14 Score=135.42 Aligned_cols=159 Identities=15% Similarity=0.229 Sum_probs=102.8
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTE 288 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~ 288 (473)
...+.+|++++.. ..+.+++.+..++.. ..++.++|+||||||||++++++++++ +.+++.+++..
T Consensus 8 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 8 LPDDPTFDNFYAG--GNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCCchhhcCcCcC--CcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 4455789998832 344555555555431 225689999999999999999999987 46788888887
Q ss_pred ccCchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecC-
Q 012016 289 LRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTN- 367 (473)
Q Consensus 289 ~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN- 367 (473)
+.. .....+.......+|+|||+|.+.. . ......|...++..... +.. +|+|++
T Consensus 77 ~~~--~~~~~~~~~~~~~lLvIDdi~~l~~----------------~---~~~~~~L~~~l~~~~~~--~~~-iIits~~ 132 (226)
T TIGR03420 77 LAQ--ADPEVLEGLEQADLVCLDDVEAIAG----------------Q---PEWQEALFHLYNRVREA--GGR-LLIAGRA 132 (226)
T ss_pred HHH--hHHHHHhhcccCCEEEEeChhhhcC----------------C---hHHHHHHHHHHHHHHHc--CCe-EEEECCC
Confidence 642 2234444455667999999998732 1 11123344444433222 123 445554
Q ss_pred CCCCCC---ccccCCCce--eeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 368 HKEKLD---PALLRPGRM--DVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 368 ~~~~ld---~aLlrpgRf--d~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
.+..++ +.|.+ |+ ..+|.+|.|+.+++..+++.+....
T Consensus 133 ~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~ 175 (226)
T TIGR03420 133 APAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARR 175 (226)
T ss_pred ChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHc
Confidence 444432 66776 65 4789999999999999988765433
No 87
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.5e-14 Score=150.62 Aligned_cols=192 Identities=18% Similarity=0.259 Sum_probs=131.6
Q ss_pred cccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC----CceEEcccccccCc--
Q 012016 219 ETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLELTELRSN-- 292 (473)
Q Consensus 219 ~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~----~~~~~l~~~~~~~~-- 292 (473)
.+++..+..|++..++...+ +.-..++||+||+|||||.|++++++++. +.+..++|+.+...
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 46666666777665533322 22345899999999999999999999983 55667888887532
Q ss_pred hHHHHHHH----Hh--ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEec
Q 012016 293 SDLRTLLV----AT--ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTT 366 (473)
Q Consensus 293 ~~l~~l~~----~~--~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 366 (473)
..+++.+. .+ -.|+||++||+|+++... +...+........+..+|+.+-......+..+.+|+|.
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s--------~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~ 548 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS--------SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATG 548 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC--------cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEec
Confidence 33444333 33 379999999999998511 11112233344556666655433333444456889999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc-cCCHHHHHHHHhcC-CCCHHHH
Q 012016 367 NHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE-HILFEEIEELISTT-QVTPAEV 429 (473)
Q Consensus 367 N~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~-~~l~~~i~~l~~~~-~~t~a~i 429 (473)
+....|+|-|..|++|+.++.++.|...+|.+|+.+.+.... .....+++-+..++ |+.+.|+
T Consensus 549 qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL 613 (952)
T KOG0735|consen 549 QELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDL 613 (952)
T ss_pred hhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhH
Confidence 999999999999999999999999999999999999886542 23344444443333 4666555
No 88
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=4.9e-14 Score=152.43 Aligned_cols=155 Identities=16% Similarity=0.255 Sum_probs=116.0
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++|+|++.+++.+.+.+. . ...++.||||||+|+|||++++++|+.++.
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~----~--------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAID----T--------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 356899999999988877766543 1 124678999999999999999999999853
Q ss_pred -----------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 280 -----------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 280 -----------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
+++.++..+......++++..... ...|++|||+|.+. ....
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt---------------------~~a~ 136 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS---------------------TNAF 136 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC---------------------HHHH
Confidence 244555443334456666665442 34699999999872 3467
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+.||..|+.. ++.+++|++|+.+++|.++++. |+ .+++|..++.++....+...+..+
T Consensus 137 naLLk~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~e 194 (576)
T PRK14965 137 NALLKTLEEP----PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQE 194 (576)
T ss_pred HHHHHHHHcC----CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHh
Confidence 8899999853 3568899999999999999997 77 478999999988777776655443
No 89
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.3e-14 Score=150.29 Aligned_cols=156 Identities=19% Similarity=0.315 Sum_probs=113.1
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC------------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 279 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------ 279 (473)
...|.+|++|+|++.+++.|.+.+. . ...+..|||+||||||||++|+++|+.+..
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~----~--------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQ----E--------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHH----c--------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 3467999999999988766655433 1 122468999999999999999999999964
Q ss_pred ------------ceEEcccccccCchHHHHHHHHh------ccCceEEEeccccccccccCCccccCCCCCCCccchhHH
Q 012016 280 ------------DVYDLELTELRSNSDLRTLLVAT------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVT 341 (473)
Q Consensus 280 ------------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (473)
+++.++...-.....++.+.... ....||||||+|.+. ...
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt---------------------~~a 135 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT---------------------REA 135 (624)
T ss_pred HHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC---------------------HHH
Confidence 24555543222334445443222 245799999999872 345
Q ss_pred HHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 342 LSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 342 ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
.+.||..|+.. ....++|++||.+..+.+.+++ |+ .+|+|+.++.++...++...+..+
T Consensus 136 ~naLLk~LEEP----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~e 194 (624)
T PRK14959 136 FNALLKTLEEP----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGRE 194 (624)
T ss_pred HHHHHHHhhcc----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHc
Confidence 68888888753 2458889999999999999887 87 478999999999887777655443
No 90
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=2e-13 Score=143.58 Aligned_cols=154 Identities=19% Similarity=0.265 Sum_probs=111.0
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++|+|++.+++.+...+. . ...+..||||||||+|||++|+++|+.+..
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~----~--------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALR----F--------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 456899999999988776655443 1 124678999999999999999999998742
Q ss_pred ------------ceEEcccccccCchHHHHHHHHh------ccCceEEEeccccccccccCCccccCCCCCCCccchhHH
Q 012016 280 ------------DVYDLELTELRSNSDLRTLLVAT------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVT 341 (473)
Q Consensus 280 ------------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (473)
+++.++.....+...++.+.... ..+.|+||||+|.+. ...
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt---------------------~~~ 137 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT---------------------KEA 137 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC---------------------HHH
Confidence 34444432222234454433322 356899999999873 234
Q ss_pred HHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 342 LSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 342 ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
.+.|+..|+.. ++..++|++||.+..|.+++.+ |+. .++|+.++.++....+...+..
T Consensus 138 ~n~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~ 195 (451)
T PRK06305 138 FNSLLKTLEEP----PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQ 195 (451)
T ss_pred HHHHHHHhhcC----CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHH
Confidence 67788888863 3457888888989999999998 774 7899999999987777765543
No 91
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.6e-13 Score=145.23 Aligned_cols=156 Identities=19% Similarity=0.316 Sum_probs=112.4
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++++|++.+.+.+.+.+. . ...++.||||||||+|||++|+++|..++.
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~----~--------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVK----L--------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 456899999999988876655443 1 224568999999999999999999998852
Q ss_pred -----------ceEEcccccccCchHHHHHHHHh------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 280 -----------DVYDLELTELRSNSDLRTLLVAT------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 280 -----------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
+++.++.++..+...++.+.... ....|++|||+|.+. ....
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt---------------------~~a~ 136 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT---------------------KEAF 136 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC---------------------HHHH
Confidence 23444443323334455544433 245799999999773 3356
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE 408 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~ 408 (473)
+.||..++.. +...++|++|+.++.+.+++.+ |+. .+.|+.++.++....+...+...+
T Consensus 137 naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~eg 195 (486)
T PRK14953 137 NALLKTLEEP----PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEK 195 (486)
T ss_pred HHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcC
Confidence 7788888753 3457788888888889999887 774 799999999999888887665443
No 92
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2.5e-13 Score=144.15 Aligned_cols=155 Identities=19% Similarity=0.302 Sum_probs=116.6
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC--------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------------- 278 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~-------------- 278 (473)
..|.+|++++|++.+++.+...+. . ...++.||||||||+|||++|+++|+.+.
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~----~--------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALD----N--------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH----c--------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 457899999999988877665443 1 13467899999999999999999999872
Q ss_pred ----------CceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 279 ----------FDVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 279 ----------~~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
.+++.++..+-.+-..+++++.... ..-|++|||+|.+. ....
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt---------------------~~A~ 134 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT---------------------KEAF 134 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC---------------------HHHH
Confidence 2455555443333466777765532 34699999999872 4567
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+.||..|+.. +....+|++|+.+..+.++++. |+ .+++|..++.++....+...+..+
T Consensus 135 NALLK~LEEp----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~E 192 (535)
T PRK08451 135 NALLKTLEEP----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKE 192 (535)
T ss_pred HHHHHHHhhc----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHc
Confidence 8889988864 3457778888888999999998 86 589999999999877777666544
No 93
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.53 E-value=1.1e-13 Score=148.46 Aligned_cols=185 Identities=21% Similarity=0.256 Sum_probs=121.2
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCce
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDV 281 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~ 281 (473)
...|.+|++++|.+...+.+...+ .. +.+..+||+||||||||++|+++++++ +.++
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al----~~---------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAAL----CG---------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHH----hC---------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 356789999999988877765432 11 124689999999999999999998753 3678
Q ss_pred EEccccccc-CchHHH-HH--------------------------HHHhccCceEEEeccccccccccCCccccCCCCCC
Q 012016 282 YDLELTELR-SNSDLR-TL--------------------------LVATANRSILVVEDIDCTIDLQDRLPADIAGEGEG 333 (473)
Q Consensus 282 ~~l~~~~~~-~~~~l~-~l--------------------------~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~ 333 (473)
+.++|+... ++..+. .+ ......+++|||||||.+.
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~---------------- 188 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELH---------------- 188 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCC----------------
Confidence 888876421 111111 00 0112346899999999883
Q ss_pred CccchhHHHHHHHHHhcccc-------------------------cCCCCceEEEEecCCCCCCCccccCCCceeeEEEe
Q 012016 334 PIQQNKVTLSGFLNFIDGLW-------------------------SSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHM 388 (473)
Q Consensus 334 ~~~~~~~~ls~LL~~ldg~~-------------------------~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~ 388 (473)
....+.||..|+.-. ..+.+-++|++|||.|+.++|++++ |+. .|.|
T Consensus 189 -----~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f 260 (531)
T TIGR02902 189 -----PVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFF 260 (531)
T ss_pred -----HHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeC
Confidence 234455665553210 0011236677788999999999998 884 7899
Q ss_pred CCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcCCCCHHHHHHHH
Q 012016 389 SYCTPSGFKLLAANYLGIKEHILFEEIEELISTTQVTPAEVAEQL 433 (473)
Q Consensus 389 ~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~t~a~i~~~l 433 (473)
+.++.+++..|+++.+......+.++...++.....+.+++.+.+
T Consensus 261 ~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~n~Rel~nll 305 (531)
T TIGR02902 261 RPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYASNGREAVNIV 305 (531)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999998876554444444444443333445554443
No 94
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.53 E-value=3.3e-13 Score=132.48 Aligned_cols=145 Identities=21% Similarity=0.225 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHH----------
Q 012016 227 QKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLR---------- 296 (473)
Q Consensus 227 ~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~---------- 296 (473)
..+.+++.+..++.. .+.+||+||||||||++|+++|+.+|.+++.+++..-....++.
T Consensus 6 ~~~~l~~~~l~~l~~-----------g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~ 74 (262)
T TIGR02640 6 AVKRVTSRALRYLKS-----------GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKK 74 (262)
T ss_pred HHHHHHHHHHHHHhc-----------CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhh
Confidence 345555666655542 35799999999999999999999999999988776532211110
Q ss_pred -----------------------HHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc
Q 012016 297 -----------------------TLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW 353 (473)
Q Consensus 297 -----------------------~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 353 (473)
.++....++.+|+||||+.+- ..+.+.|+..|+.-.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~---------------------~~~q~~Ll~~Le~~~ 133 (262)
T TIGR02640 75 VHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSK---------------------PETNNVLLSVFEEGV 133 (262)
T ss_pred HHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCC---------------------HHHHHHHHHHhcCCe
Confidence 112223467899999999762 345666777775321
Q ss_pred -cC-----------CCCceEEEEecCCC-----CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 354 -SS-----------CGDERIIVFTTNHK-----EKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 354 -~~-----------~~~~~iiI~tTN~~-----~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
.- ...+..||+|+|.. ..++++|++ || ..+++++|+.++..+|+....+.
T Consensus 134 ~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~ 200 (262)
T TIGR02640 134 LELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTDV 200 (262)
T ss_pred EEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCC
Confidence 00 11245689999976 356899999 98 68999999999999999887653
No 95
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.1e-13 Score=147.33 Aligned_cols=156 Identities=15% Similarity=0.299 Sum_probs=116.5
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCc-----------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD----------- 280 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~----------- 280 (473)
...|.+|++|+|++.+++.|.+.+. . | ..+.++||+||+|+|||++|+++|+.++..
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~----~-------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFE----T-------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 3567999999999988877665443 1 1 235689999999999999999999998542
Q ss_pred ------------------eEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCcc
Q 012016 281 ------------------VYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQ 336 (473)
Q Consensus 281 ------------------~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~ 336 (473)
++.++..+..+...+++++..+. ...|+||||+|.+.
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------------- 145 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------------- 145 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-------------------
Confidence 23333333233456777765543 45799999999872
Q ss_pred chhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 337 QNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 337 ~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
....+.||..|+.. ++..++|++|+.++++.+.++. |+ ..++|..++.++....+...+..+
T Consensus 146 --~~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~ke 207 (598)
T PRK09111 146 --TAAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKE 207 (598)
T ss_pred --HHHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 34578889888753 3568888888888889889887 77 579999999999888888776544
No 96
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.3e-13 Score=146.29 Aligned_cols=155 Identities=18% Similarity=0.290 Sum_probs=114.2
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++|+|++.+++.+...+. . ...++.||||||||+|||++|+++|+.++.
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~----~--------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIE----S--------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 356899999999988887665543 1 123568999999999999999999999853
Q ss_pred -----------ceEEcccccccCchHHHHHHHHh------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 280 -----------DVYDLELTELRSNSDLRTLLVAT------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 280 -----------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
+++.++...-..-..++++...+ ....|++|||+|.+. ....
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls---------------------~~a~ 136 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS---------------------NSAF 136 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC---------------------HHHH
Confidence 34444433222334566655332 245799999999872 3467
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+.||..++. ++...++|++|+.+..+.++|+. |+. .++|..++.++....+...+...
T Consensus 137 naLLK~LEe----pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~e 194 (563)
T PRK06647 137 NALLKTIEE----PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLED 194 (563)
T ss_pred HHHHHhhcc----CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHc
Confidence 888888885 34568888888888999999988 875 68999999999888777766433
No 97
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.3e-13 Score=143.21 Aligned_cols=154 Identities=15% Similarity=0.279 Sum_probs=110.0
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++|+|++.+++.+...+. + ...+.+||||||||+|||++|+++|+.+..
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~----~--------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLR----M--------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHH----h--------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 467899999999988876655433 1 123567999999999999999999999854
Q ss_pred -------------------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCC
Q 012016 280 -------------------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGP 334 (473)
Q Consensus 280 -------------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~ 334 (473)
+++.++......-..++++..... ...|+||||+|.+.
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~----------------- 140 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS----------------- 140 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------------
Confidence 223333322223356666655542 45799999999873
Q ss_pred ccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 335 IQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 335 ~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
....+.|+..++.. ++..++|++|+.+..+-+++.+ |+. +++|..++.++....+...+..
T Consensus 141 ----~~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~ 201 (397)
T PRK14955 141 ----IAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEA 201 (397)
T ss_pred ----HHHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHH
Confidence 23456788887743 3457777777778888888887 774 7899999998887777766543
No 98
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3.1e-13 Score=146.19 Aligned_cols=154 Identities=15% Similarity=0.288 Sum_probs=111.5
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++++|++.+++.+...+ .+ ...+.+|||+||||||||++|+++|+.+..
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i----~~--------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSL----RM--------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHH----Hc--------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 35689999999998877654433 21 234668999999999999999999999855
Q ss_pred -------------------ceEEcccccccCchHHHHHHHHh------ccCceEEEeccccccccccCCccccCCCCCCC
Q 012016 280 -------------------DVYDLELTELRSNSDLRTLLVAT------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGP 334 (473)
Q Consensus 280 -------------------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~ 334 (473)
+++.++.....+...++.+.... ...-|+||||+|.+.
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt----------------- 140 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS----------------- 140 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------------
Confidence 22223332222345666666554 246799999999873
Q ss_pred ccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 335 IQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 335 ~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
....+.||..|+.. ++..++|++|+.+.+|.+++.. |+ ..++|..++.++....+...+..
T Consensus 141 ----~~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~ 201 (620)
T PRK14954 141 ----TAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRA 201 (620)
T ss_pred ----HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHH
Confidence 23467888888853 3457777777888999999987 76 58999999999877777665543
No 99
>PRK08727 hypothetical protein; Validated
Probab=99.52 E-value=2.8e-13 Score=130.67 Aligned_cols=159 Identities=18% Similarity=0.267 Sum_probs=104.5
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 210 VNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 210 ~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
+......+|+++++.+.- ....+..... | .+...++|+||+|||||+|++|+|+++ +..+.+++.
T Consensus 10 ~~~~~~~~f~~f~~~~~n---~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDG---LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred CCCCCcCChhhccCCcHH---HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 344556789999866542 2222222111 1 123569999999999999999998876 667777776
Q ss_pred ccccCchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEec
Q 012016 287 TELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTT 366 (473)
Q Consensus 287 ~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 366 (473)
.+.. ..+...+....+..+|+|||++.+.. .......+..++|.+. .. +.-+|+|+
T Consensus 78 ~~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~----------------~~~~~~~lf~l~n~~~---~~---~~~vI~ts 133 (233)
T PRK08727 78 QAAA--GRLRDALEALEGRSLVALDGLESIAG----------------QREDEVALFDFHNRAR---AA---GITLLYTA 133 (233)
T ss_pred HHhh--hhHHHHHHHHhcCCEEEEeCcccccC----------------ChHHHHHHHHHHHHHH---Hc---CCeEEEEC
Confidence 5543 34556666777888999999998742 1112334444544432 21 23355555
Q ss_pred C-CCCCC---CccccCCCce--eeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 367 N-HKEKL---DPALLRPGRM--DVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 367 N-~~~~l---d~aLlrpgRf--d~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
| .|..+ +|+|.+ || ..+++++.|+.+++..+++.....
T Consensus 134 ~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 134 RQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred CCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 4 66654 789988 86 578999999999999999975543
No 100
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.52 E-value=2.4e-13 Score=131.29 Aligned_cols=160 Identities=16% Similarity=0.195 Sum_probs=99.9
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC---CceEEcccc
Q 012016 211 NLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELT 287 (473)
Q Consensus 211 ~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~---~~~~~l~~~ 287 (473)
.+.++.+|++++-.. ...++..+..+.... ..+.++||||||||||+|++++|+++. ..+.++++.
T Consensus 14 ~~~~~~~fd~f~~~~--n~~a~~~l~~~~~~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 14 YLPDDETFASFYPGD--NDSLLAALQNALRQE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCCcCCccccccCc--cHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 345567899987431 233445555443211 135899999999999999999999863 445555554
Q ss_pred cccCchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecC
Q 012016 288 ELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTN 367 (473)
Q Consensus 288 ~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 367 (473)
.... ...+++....+-.+|+|||++.+.. .......+..++|.+ ... +...+|+.+++
T Consensus 83 ~~~~--~~~~~~~~~~~~dlliiDdi~~~~~----------------~~~~~~~lf~l~n~~---~e~-g~~~li~ts~~ 140 (235)
T PRK08084 83 KRAW--FVPEVLEGMEQLSLVCIDNIECIAG----------------DELWEMAIFDLYNRI---LES-GRTRLLITGDR 140 (235)
T ss_pred HHhh--hhHHHHHHhhhCCEEEEeChhhhcC----------------CHHHHHHHHHHHHHH---HHc-CCCeEEEeCCC
Confidence 4321 1223333344457999999998742 112233344444433 221 22245555555
Q ss_pred CCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHHhC
Q 012016 368 HKEK---LDPALLRPGRMD--VHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 368 ~~~~---ld~aLlrpgRfd--~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
.|.. +.|+|+. |+. .++++..|+.+++.++++....
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 6655 5789998 885 7899999999999999876443
No 101
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.52 E-value=5e-14 Score=136.25 Aligned_cols=155 Identities=22% Similarity=0.294 Sum_probs=107.2
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC------ceEEcc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------DVYDLE 285 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------~~~~l~ 285 (473)
...|.+|+++++++.+.+.+.+.+.. + --..||||||||||||+.|.++|.+|.- .+..++
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~--~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR--R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh--c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 57789999999999888887776653 1 1247999999999999999999999954 233444
Q ss_pred cccccCchHHH-------HHHHHh--------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhc
Q 012016 286 LTELRSNSDLR-------TLLVAT--------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFID 350 (473)
Q Consensus 286 ~~~~~~~~~l~-------~l~~~~--------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ld 350 (473)
.++-.+.+-.+ .+.... +..-|++|||.|.+. ..+.+.|.+.||
T Consensus 96 aSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt---------------------sdaq~aLrr~mE 154 (346)
T KOG0989|consen 96 ASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT---------------------SDAQAALRRTME 154 (346)
T ss_pred ccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh---------------------HHHHHHHHHHHh
Confidence 44432222111 111111 012699999999883 456788889998
Q ss_pred ccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 351 GLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 351 g~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
... ....+|+.||.++.|.+.+.. |+. ..+|+....+....-++.....+
T Consensus 155 ~~s----~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E 204 (346)
T KOG0989|consen 155 DFS----RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKE 204 (346)
T ss_pred ccc----cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHh
Confidence 742 458899999999999999988 875 56777766554444444444333
No 102
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.52 E-value=5.5e-13 Score=136.87 Aligned_cols=159 Identities=14% Similarity=0.186 Sum_probs=108.3
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC---------CceEEcccc
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---------FDVYDLELT 287 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~---------~~~~~l~~~ 287 (473)
..+.+++.++..+.|...+...+.+ ..+.+++|+||||||||++++++++.+. ..++.++|.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 3467899888888888777655542 1245799999999999999999998763 567778876
Q ss_pred cccCch--------------------------HHHHHHHH---hccCceEEEeccccccccccCCccccCCCCCCCccch
Q 012016 288 ELRSNS--------------------------DLRTLLVA---TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQN 338 (473)
Q Consensus 288 ~~~~~~--------------------------~l~~l~~~---~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~ 338 (473)
...+.. .+..++.. ..++.||+|||+|.+.. ..
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~------------------~~ 145 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG------------------DD 145 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc------------------CC
Confidence 543211 01112221 23467999999999852 01
Q ss_pred hHHHHHHHHHhcccccCCCCceEEEEecCCCC---CCCccccCCCcee-eEEEeCCCCHHHHHHHHHHHhC
Q 012016 339 KVTLSGFLNFIDGLWSSCGDERIIVFTTNHKE---KLDPALLRPGRMD-VHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 339 ~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~---~ld~aLlrpgRfd-~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
...+..|+...+. ....+..+++|+++|.++ .+++.+.+ ||. ..|+|+.++.++...++...+.
T Consensus 146 ~~~L~~l~~~~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 146 DDLLYQLSRARSN-GDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred cHHHHhHhccccc-cCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 2244455543211 111224588899999875 57888877 774 6799999999999999998775
No 103
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.50 E-value=6.8e-13 Score=134.53 Aligned_cols=155 Identities=14% Similarity=0.242 Sum_probs=103.4
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC-----CceEEccc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FDVYDLEL 286 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~-----~~~~~l~~ 286 (473)
...|.+|++++|.+++++.+...+ .. +. ..++|||||||||||++++++|+++. .++..+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~----~~-------~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAV----DS-------PN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHH----hC-------CC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 456789999999888776654433 22 11 23699999999999999999999984 34566666
Q ss_pred ccccC--------------------------chHHHHHHHHh-------ccCceEEEeccccccccccCCccccCCCCCC
Q 012016 287 TELRS--------------------------NSDLRTLLVAT-------ANRSILVVEDIDCTIDLQDRLPADIAGEGEG 333 (473)
Q Consensus 287 ~~~~~--------------------------~~~l~~l~~~~-------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~ 333 (473)
.++.. ...+++++... ..+.+|+|||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------- 139 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------- 139 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------------
Confidence 54310 01122222221 2356999999997731
Q ss_pred CccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 334 PIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 334 ~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
.....|+..++... ....+|++|+.+..+.++|.. |+ ..++|..|+.++...++...+...
T Consensus 140 ------~~~~~L~~~le~~~----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~ 200 (337)
T PRK12402 140 ------DAQQALRRIMEQYS----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAE 200 (337)
T ss_pred ------HHHHHHHHHHHhcc----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 12334555555432 234566677777778888887 76 578999999999988888876544
No 104
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5.1e-13 Score=145.15 Aligned_cols=154 Identities=18% Similarity=0.297 Sum_probs=113.2
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC------------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 279 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------ 279 (473)
...|.+|++++|++.+++.|...+.. | ....+||||||||||||++|+++|+.++.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 34678999999998888776554431 1 12458999999999999999999999854
Q ss_pred --------------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchh
Q 012016 280 --------------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNK 339 (473)
Q Consensus 280 --------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~ 339 (473)
+++.++.........+++++..+. ...|+||||+|.+. .
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt---------------------~ 135 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS---------------------T 135 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC---------------------H
Confidence 344444433234457777776543 34799999999872 3
Q ss_pred HHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 340 VTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 340 ~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
...+.||..|+.. ....++|++|+.++.+.++|+. |+ ..++|+.++.++....+.....
T Consensus 136 ~a~naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~ 194 (620)
T PRK14948 136 AAFNALLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAE 194 (620)
T ss_pred HHHHHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHH
Confidence 4678899999853 3558888888889999999987 77 5689999988876665555443
No 105
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.50 E-value=2.4e-13 Score=143.58 Aligned_cols=192 Identities=18% Similarity=0.263 Sum_probs=119.3
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEcc
Q 012016 211 NLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLE 285 (473)
Q Consensus 211 ~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~ 285 (473)
.+.+..+|++++..+.-+ .....+..+...+ |.. .+.++||||||||||+|++|+|+++ +..+++++
T Consensus 114 ~l~~~~tfd~fv~g~~n~-~a~~~~~~~~~~~------~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNR-LAHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCCCcccccccCCCcH-HHHHHHHHHHhCc------Ccc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 355567899976433222 2333333333321 222 3579999999999999999999998 56688888
Q ss_pred cccccC-------chHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCC
Q 012016 286 LTELRS-------NSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGD 358 (473)
Q Consensus 286 ~~~~~~-------~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 358 (473)
+.++.. ......+.....+..+|+|||||.+.. . ..+...|+..++.+... .
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~----------------~---~~~~~~l~~~~n~l~~~--~ 244 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG----------------K---ERTQEEFFHTFNALHEA--G 244 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC----------------C---HHHHHHHHHHHHHHHHC--C
Confidence 766421 112223333445678999999998742 1 11233455555544333 2
Q ss_pred ceEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHH-HHhcCCCCHHHHHHH
Q 012016 359 ERIIVFTTNHKEK---LDPALLRPGRMD--VHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEE-LISTTQVTPAEVAEQ 432 (473)
Q Consensus 359 ~~iiI~tTN~~~~---ld~aLlrpgRfd--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~-l~~~~~~t~a~i~~~ 432 (473)
..+||.++..|.. ++++|.. ||. ..+++..|+.++|..|++..+...+..+.+++.. +++...-+..++...
T Consensus 245 ~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 245 KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHH
Confidence 2455555555544 6788887 885 6899999999999999999887655445444444 444445555555444
Q ss_pred H
Q 012016 433 L 433 (473)
Q Consensus 433 l 433 (473)
+
T Consensus 323 l 323 (450)
T PRK00149 323 L 323 (450)
T ss_pred H
Confidence 3
No 106
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.49 E-value=3.9e-13 Score=140.10 Aligned_cols=190 Identities=17% Similarity=0.225 Sum_probs=117.1
Q ss_pred CCCCCCccccc-cchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEcc
Q 012016 212 LDHPATFETLA-MEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLE 285 (473)
Q Consensus 212 ~~~p~~f~~l~-~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~ 285 (473)
+.+..+|++++ |... ......+..+...+ |. ....++||||||||||+|++|+|+++ +..++.++
T Consensus 103 l~~~~tfd~fi~g~~n--~~a~~~~~~~~~~~------~~-~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSN--RLAHAAALAVAENP------GK-AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCCcccccccCCcH--HHHHHHHHHHHhCc------Cc-cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 44557899954 4332 22333333333321 11 23569999999999999999999987 57788888
Q ss_pred cccccC-------chHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCC
Q 012016 286 LTELRS-------NSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGD 358 (473)
Q Consensus 286 ~~~~~~-------~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 358 (473)
+.++.. ...+........+..+|+|||+|.+.. . ..+...|++.++.+... +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~----------------~---~~~~~~l~~~~n~~~~~--~ 232 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG----------------K---ERTQEEFFHTFNALHEN--G 232 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC----------------C---HHHHHHHHHHHHHHHHC--C
Confidence 765421 111222233344578999999998742 1 11223344544444332 2
Q ss_pred ceEEEEecCCCC---CCCccccCCCcee--eEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHH-HHhcCCCCHHHHHHH
Q 012016 359 ERIIVFTTNHKE---KLDPALLRPGRMD--VHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEE-LISTTQVTPAEVAEQ 432 (473)
Q Consensus 359 ~~iiI~tTN~~~---~ld~aLlrpgRfd--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~-l~~~~~~t~a~i~~~ 432 (473)
..+||.++..|. .+++.|.. ||. ..++++.|+.++|..|++..+...+..+.+++.. +++...-+..++...
T Consensus 233 ~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 233 KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 345555555554 46688887 886 5899999999999999999887665555454443 444445556655444
Q ss_pred H
Q 012016 433 L 433 (473)
Q Consensus 433 l 433 (473)
+
T Consensus 311 l 311 (405)
T TIGR00362 311 L 311 (405)
T ss_pred H
Confidence 3
No 107
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.49 E-value=4.9e-13 Score=128.35 Aligned_cols=157 Identities=13% Similarity=0.234 Sum_probs=99.3
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 210 VNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 210 ~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
.+...|.+|+++.+.. .+.++..+..+.. +....++++|+||||||||+|++++++++ +.+++.+++
T Consensus 9 ~~~~~~~~~d~f~~~~--~~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 9 LGPPPPPTFDNFVAGE--NAELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCCChhhhcccccCC--cHHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 3455668899987332 1233343443332 22335689999999999999999999976 667888887
Q ss_pred ccccCchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEec
Q 012016 287 TELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTT 366 (473)
Q Consensus 287 ~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 366 (473)
..... .+.......+|+|||+|.+.. .... .|+..++..... ...++|+|+
T Consensus 79 ~~~~~------~~~~~~~~~~liiDdi~~l~~------------------~~~~---~L~~~~~~~~~~--~~~~vl~~~ 129 (227)
T PRK08903 79 ASPLL------AFDFDPEAELYAVDDVERLDD------------------AQQI---ALFNLFNRVRAH--GQGALLVAG 129 (227)
T ss_pred HHhHH------HHhhcccCCEEEEeChhhcCc------------------hHHH---HHHHHHHHHHHc--CCcEEEEeC
Confidence 66421 123344678999999998731 1222 344444433222 234455555
Q ss_pred CCCC---CCCccccCCCce--eeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 367 NHKE---KLDPALLRPGRM--DVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 367 N~~~---~ld~aLlrpgRf--d~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+.+. .+.+.|.. || ...|+++.|+.+++..++..+....
T Consensus 130 ~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~ 173 (227)
T PRK08903 130 PAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAER 173 (227)
T ss_pred CCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 5432 34566776 66 5799999999998888777654433
No 108
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=7.5e-13 Score=143.81 Aligned_cols=155 Identities=16% Similarity=0.286 Sum_probs=111.8
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
..|.+|++|+|++.+++.|...+. . ...+..||||||||+|||++++++|+.++.
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~----~--------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIA----E--------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHH----h--------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 457899999999998887655443 1 123557999999999999999999998742
Q ss_pred ------------ceEEcccccccCchHHHHHHHHh------ccCceEEEeccccccccccCCccccCCCCCCCccchhHH
Q 012016 280 ------------DVYDLELTELRSNSDLRTLLVAT------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVT 341 (473)
Q Consensus 280 ------------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (473)
+++.++.+...+...++++.... ....|+||||+|.+. ...
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~---------------------~~a 136 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS---------------------TAA 136 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC---------------------HHH
Confidence 23444443333345566655433 245799999999772 345
Q ss_pred HHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 342 LSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 342 ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
++.||..|+.. ....++|++|+.++.+.+.+.. |+. .++|..++..+...++...+...
T Consensus 137 ~naLLk~LEep----p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~e 195 (585)
T PRK14950 137 FNALLKTLEEP----PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAE 195 (585)
T ss_pred HHHHHHHHhcC----CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHc
Confidence 77888888864 2457888888888888888887 764 68999999998887777665443
No 109
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=7.2e-13 Score=140.89 Aligned_cols=168 Identities=17% Similarity=0.220 Sum_probs=121.8
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc------CchHHHHHHHHhc--cCceEEEeccccccccccCC
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR------SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRL 323 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~------~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~ 323 (473)
....+||+|+||||||+++++.|.++|.+++.++|.++. ++..+...|..+. +|+|||+-++|.+.-.++
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d-- 507 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD-- 507 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC--
Confidence 345699999999999999999999999999999998873 3456777777664 799999999998863111
Q ss_pred ccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012016 324 PADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANY 403 (473)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~ 403 (473)
.+.+-.....+..++. +|... .....+|+|+||+..+.+++.+.+ -|-..|.++.|+.++|.+|++.|
T Consensus 508 --------gged~rl~~~i~~~ls-~e~~~-~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y 575 (953)
T KOG0736|consen 508 --------GGEDARLLKVIRHLLS-NEDFK-FSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWY 575 (953)
T ss_pred --------CchhHHHHHHHHHHHh-ccccc-CCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHH
Confidence 1222222333444443 23222 233569999999999999999998 88889999999999999999999
Q ss_pred hCccccCCHHHHHHHHhc-CCCCHHHHHHHH
Q 012016 404 LGIKEHILFEEIEELIST-TQVTPAEVAEQL 433 (473)
Q Consensus 404 l~~~~~~l~~~i~~l~~~-~~~t~a~i~~~l 433 (473)
+.....--......++.. .+++.+++..+.
T Consensus 576 ~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~ 606 (953)
T KOG0736|consen 576 LNHLPLNQDVNLKQLARKTSGFSFGDLEALV 606 (953)
T ss_pred HhccccchHHHHHHHHHhcCCCCHHHHHHHh
Confidence 875432222233344443 368888875543
No 110
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=7.9e-13 Score=143.64 Aligned_cols=156 Identities=19% Similarity=0.344 Sum_probs=118.3
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC-------------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN------------- 278 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~------------- 278 (473)
...|.+|++|+|++.+++.+...+. . ...++.||||||+|+|||++++++|+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~----~--------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIA----T--------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 4567999999999988887766543 1 22467899999999999999999999874
Q ss_pred ------------CceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhH
Q 012016 279 ------------FDVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKV 340 (473)
Q Consensus 279 ------------~~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 340 (473)
.+++.++..+......++.++..+. ..-|++|||+|.+. ..
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls---------------------~~ 136 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS---------------------QA 136 (614)
T ss_pred chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC---------------------HH
Confidence 4556666654444466777775543 35699999999872 34
Q ss_pred HHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 341 TLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 341 ~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
..+.||..|+.. +...++|++|+.+.++-++|+. |+ ..++|..++.++....+...+..+
T Consensus 137 a~naLLK~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~e 196 (614)
T PRK14971 137 AFNAFLKTLEEP----PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKE 196 (614)
T ss_pred HHHHHHHHHhCC----CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHc
Confidence 577899988863 3457888888888999999998 77 469999999999887777665544
No 111
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.48 E-value=2.7e-13 Score=149.21 Aligned_cols=152 Identities=21% Similarity=0.292 Sum_probs=105.2
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCc
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSN 292 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~ 292 (473)
..|.+|++++|++..... ...+...+.... ..++|||||||||||++|+++|+.++.+++.+++... ..
T Consensus 22 ~RP~tldd~vGQe~ii~~-~~~L~~~i~~~~---------~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i 90 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGE-GRLLRRAIKADR---------VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GV 90 (725)
T ss_pred cCCCcHHHhcCcHHHhhh-hHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hh
Confidence 457999999998876643 112222332211 2479999999999999999999999999888887642 22
Q ss_pred hHHHHHHHHh-------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEe
Q 012016 293 SDLRTLLVAT-------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFT 365 (473)
Q Consensus 293 ~~l~~l~~~~-------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 365 (473)
..++..+... ....+|||||||.+.. .....|+..++. ..+++|++
T Consensus 91 ~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~---------------------~qQdaLL~~lE~------g~IiLI~a 143 (725)
T PRK13341 91 KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK---------------------AQQDALLPWVEN------GTITLIGA 143 (725)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH---------------------HHHHHHHHHhcC------ceEEEEEe
Confidence 3344333322 3467999999998731 223456666653 23566664
Q ss_pred c--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 366 T--NHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 366 T--N~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
| |....+++++++ |+ ..++|+.++.+++..++.+++.
T Consensus 144 TTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 144 TTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred cCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 4 333578899998 65 4689999999999999998875
No 112
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.48 E-value=7.9e-13 Score=148.63 Aligned_cols=157 Identities=17% Similarity=0.255 Sum_probs=110.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceEE
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 283 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~ 283 (473)
.|..++.++|.++....+++.+. ++ .+.+.+|+||||||||++++.+|..+ +..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~----r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILL----RR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHh----cC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 45689999998876555554332 21 24689999999999999999999986 356787
Q ss_pred cccccccC--------chHHHHHHHHhc---cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc
Q 012016 284 LELTELRS--------NSDLRTLLVATA---NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL 352 (473)
Q Consensus 284 l~~~~~~~--------~~~l~~l~~~~~---~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 352 (473)
++++.+.. ...++.++.... .++|||||||+.+....+. .+ .....+-|+..+.
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~---------~~----~~d~~n~Lkp~l~-- 313 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ---------AG----QGDAANLLKPALA-- 313 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCc---------cc----cccHHHHhhHHhh--
Confidence 87776531 256777887653 5789999999999752110 00 0111122333332
Q ss_pred ccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 353 WSSCGDERIIVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 353 ~~~~~~~~iiI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
.+++.+|+||+..+ .+||||.| ||. .|.++.|+.++...|++.+..
T Consensus 314 ----~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 314 ----RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred ----CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHH
Confidence 24688888888643 48999999 996 799999999999999765443
No 113
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.47 E-value=8.1e-13 Score=136.97 Aligned_cols=177 Identities=21% Similarity=0.226 Sum_probs=114.1
Q ss_pred Cccc-cccchHHHHHHHHHHHHHHhchhHHhhh--cC-CCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC-
Q 012016 217 TFET-LAMEQEQKTKIMQDLERFVKRKDYYRRV--GK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS- 291 (473)
Q Consensus 217 ~f~~-l~~~~~~k~~l~~~l~~fl~~~~~y~~~--g~-~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~- 291 (473)
.++. |+|+++.|+.+...+.+..++-...... +. .++.++||+||||||||++|+++|+.++.|++.++++.+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 3543 7999999998877665544332111000 11 23578999999999999999999999999999999887632
Q ss_pred -------chHHHHHHHH------hccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccccc----
Q 012016 292 -------NSDLRTLLVA------TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWS---- 354 (473)
Q Consensus 292 -------~~~l~~l~~~------~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~---- 354 (473)
...+..++.. ...++||||||||.+..... . . ....+.........||+.|||-..
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~--~--~---~~~~d~s~~~vQ~~LL~~Leg~~~~v~~ 220 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSE--N--P---SITRDVSGEGVQQALLKILEGTVASVPP 220 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccC--C--C---CcCCCcccHHHHHHHHHHHhcCeEEeCC
Confidence 1223333322 23679999999999964210 0 0 001111223577889999987421
Q ss_pred CC-----CCceEEEEecCCCC----------------------------------------------------CCCcccc
Q 012016 355 SC-----GDERIIVFTTNHKE----------------------------------------------------KLDPALL 377 (473)
Q Consensus 355 ~~-----~~~~iiI~tTN~~~----------------------------------------------------~ld~aLl 377 (473)
.. ..+.++|.|+|-.. .+.|+|+
T Consensus 221 ~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl 300 (412)
T PRK05342 221 QGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI 300 (412)
T ss_pred CCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh
Confidence 11 12346777777510 0233344
Q ss_pred CCCceeeEEEeCCCCHHHHHHHHHH
Q 012016 378 RPGRMDVHVHMSYCTPSGFKLLAAN 402 (473)
Q Consensus 378 rpgRfd~~I~~~~p~~~~r~~l~~~ 402 (473)
||+|..+.|...+.+....|+..
T Consensus 301 --gRld~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 301 --GRLPVVATLEELDEEALVRILTE 323 (412)
T ss_pred --CCCCeeeecCCCCHHHHHHHHHH
Confidence 59999999999999999888874
No 114
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.47 E-value=5.4e-13 Score=148.48 Aligned_cols=158 Identities=22% Similarity=0.224 Sum_probs=114.9
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchH-----
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSD----- 294 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~----- 294 (473)
+..|.+++|+.|++.+...... +......++|+||||||||++++++|+.++.+++.++++.+.+...
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 4788999999998877643321 1223446999999999999999999999999999988877643322
Q ss_pred ----------HHHHHHHhc-cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc----cc-----
Q 012016 295 ----------LRTLLVATA-NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL----WS----- 354 (473)
Q Consensus 295 ----------l~~l~~~~~-~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~----~~----- 354 (473)
+.+.+.... ...||+|||||.+.... .....+.|+..+|.- +.
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~-----------------~g~~~~aLlevld~~~~~~~~d~~~~ 458 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDM-----------------RGDPASALLEVLDPEQNVAFSDHYLE 458 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCCEEEEEChhhccccc-----------------CCCHHHHHHHHhccccEEEEeccccc
Confidence 223333332 45699999999885310 112356777777631 00
Q ss_pred --CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 355 --SCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 355 --~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
..-.++++|+|+|.. .++|+|+. ||. .|.++.++.++..+|+++++.
T Consensus 459 ~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 459 VDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 011458999999987 59999999 996 689999999999999999984
No 115
>PRK05642 DNA replication initiation factor; Validated
Probab=99.46 E-value=1.8e-12 Score=125.08 Aligned_cols=162 Identities=18% Similarity=0.197 Sum_probs=102.5
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 210 VNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 210 ~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
+...+..+|++++... ....+..+..+..... ....+.++||||+|||||+|++|+|+++ +..+++++.
T Consensus 10 ~~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~~------~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~ 81 (234)
T PRK05642 10 VRLRDDATFANYYPGA--NAAALGYVERLCEADA------GWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL 81 (234)
T ss_pred CCCCCcccccccCcCC--hHHHHHHHHHHhhccc------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH
Confidence 4455667999987332 2344444444432111 1113679999999999999999999875 577888887
Q ss_pred ccccCchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEec
Q 012016 287 TELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTT 366 (473)
Q Consensus 287 ~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 366 (473)
.++... ...++....+..+|+|||++.+.. ..... ..|++.++..... +..+||.++
T Consensus 82 ~~~~~~--~~~~~~~~~~~d~LiiDDi~~~~~----------------~~~~~---~~Lf~l~n~~~~~--g~~ilits~ 138 (234)
T PRK05642 82 AELLDR--GPELLDNLEQYELVCLDDLDVIAG----------------KADWE---EALFHLFNRLRDS--GRRLLLAAS 138 (234)
T ss_pred HHHHhh--hHHHHHhhhhCCEEEEechhhhcC----------------ChHHH---HHHHHHHHHHHhc--CCEEEEeCC
Confidence 765421 223344444557999999997732 11122 3344444443322 235555555
Q ss_pred CCCCC---CCccccCCCce--eeEEEeCCCCHHHHHHHHHHHh
Q 012016 367 NHKEK---LDPALLRPGRM--DVHVHMSYCTPSGFKLLAANYL 404 (473)
Q Consensus 367 N~~~~---ld~aLlrpgRf--d~~I~~~~p~~~~r~~l~~~~l 404 (473)
..|.. ..|+|+. || ...+.+..|+.+.+..+++...
T Consensus 139 ~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 139 KSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred CCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 55533 3688888 87 4778889999999999988543
No 116
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.46 E-value=4.7e-13 Score=147.97 Aligned_cols=154 Identities=19% Similarity=0.317 Sum_probs=106.3
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceEEccc
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLEL 286 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~l~~ 286 (473)
.++.++|.++....+++.+.. + -+.++||+||||||||++++++|..+ +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r----~---------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR----R---------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc----c---------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 466788877777766654442 1 24688999999999999999999874 566777766
Q ss_pred ccccC--------chHHHHHHHHh--ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHH-HhcccccC
Q 012016 287 TELRS--------NSDLRTLLVAT--ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLN-FIDGLWSS 355 (473)
Q Consensus 287 ~~~~~--------~~~l~~l~~~~--~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~-~ldg~~~~ 355 (473)
..+.. +..++.++... ..++||||||||.+++.... .. ....+..+|. .+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~------------~~-g~~d~~nlLkp~L~----- 312 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA------------SG-GQVDAANLIKPLLS----- 312 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC------------CC-cHHHHHHHHHHHHh-----
Confidence 55421 23456666544 35789999999999752110 00 1111222222 221
Q ss_pred CCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 356 CGDERIIVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 356 ~~~~~iiI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
.+++.+|++||.++ ..||+|.| ||+ .|+++.|+.+++..|++.+..
T Consensus 313 -~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 313 -SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred -CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 24688999998865 57999999 996 799999999999999986543
No 117
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.45 E-value=2.9e-12 Score=132.96 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=106.5
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEcccccccC
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELTELRS 291 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~~~~~~~ 291 (473)
..+.+++.++..++|...+...+.+. .+.+++||||||||||++++.+++.+ +..++.+++....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~---------~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGS---------RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 44678887777777776665554321 14579999999999999999999987 57788888754321
Q ss_pred c-----------------------hHH-HHHH---HHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHH
Q 012016 292 N-----------------------SDL-RTLL---VATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSG 344 (473)
Q Consensus 292 ~-----------------------~~l-~~l~---~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~ 344 (473)
. ..+ ..+. .....+.||+|||+|.+.. ......+..
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~-----------------~~~~~~l~~ 161 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE-----------------KEGNDVLYS 161 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc-----------------cCCchHHHH
Confidence 1 111 1111 1122457999999998851 012345666
Q ss_pred HHHHhcccccCCCCceEEEEecCCC---CCCCccccCCCce-eeEEEeCCCCHHHHHHHHHHHhC
Q 012016 345 FLNFIDGLWSSCGDERIIVFTTNHK---EKLDPALLRPGRM-DVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 345 LL~~ldg~~~~~~~~~iiI~tTN~~---~~ld~aLlrpgRf-d~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
|++.++... +.++.+|+++|.. +.+++.+.+ |+ ...|+|+.++.++...++...+.
T Consensus 162 l~~~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 162 LLRAHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred HHHhhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 666655432 2357788888876 456777765 55 36789999999999999988764
No 118
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.45 E-value=4.8e-13 Score=150.75 Aligned_cols=157 Identities=19% Similarity=0.267 Sum_probs=111.9
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceEE
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 283 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~ 283 (473)
.|-.++.++|.+.....+++.|. ++ .+.+++|+||||||||++++++|..+ +.+++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~----r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQ----RR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHh----cC---------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 35678999998876665555443 22 24689999999999999999999988 789999
Q ss_pred cccccccC--------chHHHHHHHHh---ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc
Q 012016 284 LELTELRS--------NSDLRTLLVAT---ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL 352 (473)
Q Consensus 284 l~~~~~~~--------~~~l~~l~~~~---~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 352 (473)
++++.+.. +..++.+|... ..++||||||+|.+.+.... .+. ....+-|...+.
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~---------~~~----~d~~~~lkp~l~-- 304 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---------DGA----MDAGNMLKPALA-- 304 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC---------ccc----hhHHHHhcchhh--
Confidence 88877532 23577777654 35789999999999752110 011 111111222221
Q ss_pred ccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 353 WSSCGDERIIVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 353 ~~~~~~~~iiI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
.+++.+|++|+..+ .+|+||.| ||+ .|.++.|+.+++..|++....
T Consensus 305 ----~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 305 ----RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred ----cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhh
Confidence 24688999888876 48999999 997 589999999999998876543
No 119
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.45 E-value=1.1e-12 Score=140.20 Aligned_cols=192 Identities=18% Similarity=0.216 Sum_probs=119.5
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEcc
Q 012016 211 NLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLE 285 (473)
Q Consensus 211 ~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~ 285 (473)
.+....+|++++..+.-. .....+...... .+. +.+.++|||++|||||+|++|||+++ ++.+++++
T Consensus 280 ~L~~~~TFDnFvvG~sN~-~A~aaa~avae~------~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 280 RLNPKYTFDTFVIGASNR-FAHAAAVAVAEA------PAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCCCHhhhcCCCccH-HHHHHHHHHHhC------ccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 345556899987544322 122222222221 121 23459999999999999999999987 57888888
Q ss_pred cccccC-------chHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCC
Q 012016 286 LTELRS-------NSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGD 358 (473)
Q Consensus 286 ~~~~~~-------~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 358 (473)
+.++.. +..+..+.....+..+|+||||+.+.. .. .+...|++.++.+...
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g----------------ke---~tqeeLF~l~N~l~e~--- 409 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLED----------------KE---STQEEFFHTFNTLHNA--- 409 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccC----------------CH---HHHHHHHHHHHHHHhc---
Confidence 766521 111222223345678999999998843 11 1223344444444332
Q ss_pred ceEEEEecCCC----CCCCccccCCCce--eeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHH-hcCCCCHHHHHH
Q 012016 359 ERIIVFTTNHK----EKLDPALLRPGRM--DVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELI-STTQVTPAEVAE 431 (473)
Q Consensus 359 ~~iiI~tTN~~----~~ld~aLlrpgRf--d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~-~~~~~t~a~i~~ 431 (473)
+.-||+|+|.+ ..+++.|.+ || ...+++..|+.+.|..|++.........+.+++...+ ....-+..++..
T Consensus 410 gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 410 NKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred CCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHH
Confidence 13344566654 357888988 88 5677999999999999999988776666666665554 344455566655
Q ss_pred HHh
Q 012016 432 QLM 434 (473)
Q Consensus 432 ~l~ 434 (473)
.|.
T Consensus 488 aL~ 490 (617)
T PRK14086 488 ALI 490 (617)
T ss_pred HHH
Confidence 443
No 120
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=1.3e-12 Score=144.45 Aligned_cols=159 Identities=13% Similarity=0.277 Sum_probs=111.5
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHH
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLL 299 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~ 299 (473)
.|+|+++.++.|.+.+.....+-. .. ..|...+||+||||||||.+|+++|..++.+++.+++++......+.+++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~---~~-~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG---HE-HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc---CC-CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 367888888877776654432110 00 12234699999999999999999999999999999988764322222221
Q ss_pred ---------------HH---hccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcc-ccc-CCC--
Q 012016 300 ---------------VA---TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDG-LWS-SCG-- 357 (473)
Q Consensus 300 ---------------~~---~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-~~~-~~~-- 357 (473)
.. ....+||+|||||.+- ....+.||..||. ... ..|
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~---------------------~~v~~~LLq~ld~G~ltd~~g~~ 593 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH---------------------PDVFNLLLQVMDNGTLTDNNGRK 593 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh---------------------HHHHHHHHHHHhcCeeecCCCce
Confidence 11 1245899999999872 3467788888873 211 111
Q ss_pred ---CceEEEEecCCC-------------------------CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 358 ---DERIIVFTTNHK-------------------------EKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 358 ---~~~iiI~tTN~~-------------------------~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
.+.+||+|||.- ..+.|.|+. |+|.+|.|+..+.++..+|+..++.
T Consensus 594 vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred ecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 357899999932 125577777 9999999999999999999987775
No 121
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.45 E-value=1.5e-12 Score=124.41 Aligned_cols=175 Identities=18% Similarity=0.271 Sum_probs=105.6
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEccccc
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELTE 288 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~~~~ 288 (473)
+.-||++++-.+. .+.....+......+. . ....++||||+|+|||+|++|+++++ +..+++++..+
T Consensus 3 ~~~tFdnfv~g~~-N~~a~~~~~~ia~~~~------~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~ 74 (219)
T PF00308_consen 3 PKYTFDNFVVGES-NELAYAAAKAIAENPG------E-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE 74 (219)
T ss_dssp TT-SCCCS--TTT-THHHHHHHHHHHHSTT------T-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH
T ss_pred CCCccccCCcCCc-HHHHHHHHHHHHhcCC------C-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH
Confidence 3468999864332 2223333443333221 1 22358999999999999999999986 56788887665
Q ss_pred cc-------CchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceE
Q 012016 289 LR-------SNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERI 361 (473)
Q Consensus 289 ~~-------~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~i 361 (473)
+. ....+.++........+|+|||++.+.. ...+...|.+.++.+... +..+
T Consensus 75 f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~-------------------~~~~q~~lf~l~n~~~~~--~k~l 133 (219)
T PF00308_consen 75 FIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG-------------------KQRTQEELFHLFNRLIES--GKQL 133 (219)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT-------------------HHHHHHHHHHHHHHHHHT--TSEE
T ss_pred HHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC-------------------chHHHHHHHHHHHHHHhh--CCeE
Confidence 42 1233445555667889999999998843 123444555555554433 3356
Q ss_pred EEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHH
Q 012016 362 IVFTTNHKEK---LDPALLRPGRMD--VHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELI 419 (473)
Q Consensus 362 iI~tTN~~~~---ld~aLlrpgRfd--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~ 419 (473)
|+.+...|.. ++|.|.. ||. ..+++..|+.+.|..++..........+.+++...+
T Consensus 134 i~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l 194 (219)
T PF00308_consen 134 ILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYL 194 (219)
T ss_dssp EEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHH
T ss_pred EEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 6555566654 4677776 764 589999999999999999988776666666655544
No 122
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.44 E-value=8.5e-13 Score=138.62 Aligned_cols=155 Identities=17% Similarity=0.331 Sum_probs=123.0
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC---------------
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN--------------- 278 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~--------------- 278 (473)
.|.+|++++|++.+.+.|.+.+.. .....+|||.||.|||||++|+.+|+.++
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 458999999999888887665541 12256899999999999999999999884
Q ss_pred ---------CceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHH
Q 012016 279 ---------FDVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLS 343 (473)
Q Consensus 279 ---------~~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls 343 (473)
.+++.+|..+-.+-+++|++..... +.-|++|||++.+ ++..++
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML---------------------S~~afN 137 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML---------------------SKQAFN 137 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh---------------------hHHHHH
Confidence 3444555554455677888887763 4579999999977 467889
Q ss_pred HHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc
Q 012016 344 GFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE 408 (473)
Q Consensus 344 ~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~ 408 (473)
.||..++. ++..+++|++|..++++++.++. |+ .+..|...+.++....+..++..++
T Consensus 138 ALLKTLEE----PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~ 195 (515)
T COG2812 138 ALLKTLEE----PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEG 195 (515)
T ss_pred HHhccccc----CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcC
Confidence 99998874 56779999999999999999997 77 4678889999998888888887553
No 123
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.44 E-value=3.3e-12 Score=131.88 Aligned_cols=175 Identities=23% Similarity=0.279 Sum_probs=111.7
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhh----hcCC-CCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC---
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRR----VGKA-WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS--- 291 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~----~g~~-~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~--- 291 (473)
.++|+++.++.+...+.+..++-..... .+.+ .+.++||+||||||||++|+++|..++.++..++++.+..
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3589999998887766544433111000 0111 1458999999999999999999999999999888776531
Q ss_pred -----chHHHHHHHH------hccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccC----C
Q 012016 292 -----NSDLRTLLVA------TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSS----C 356 (473)
Q Consensus 292 -----~~~l~~l~~~------~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~----~ 356 (473)
...+..++.. ...++||||||||.+...... ... ..+.......+.||+.|+|.... .
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~--~s~-----~~dvsg~~vq~~LL~iLeG~~~~v~~~~ 230 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSEN--PSI-----TRDVSGEGVQQALLKIIEGTVANVPPQG 230 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcc--ccc-----cccccchhHHHHHHHHhhccceecccCC
Confidence 1223333332 235789999999988642110 000 00111235677888888875321 1
Q ss_pred -----CCceEEEEecCCC---------------------------C-----------------------CCCccccCCCc
Q 012016 357 -----GDERIIVFTTNHK---------------------------E-----------------------KLDPALLRPGR 381 (473)
Q Consensus 357 -----~~~~iiI~tTN~~---------------------------~-----------------------~ld~aLlrpgR 381 (473)
..+.++|.|+|-. + .+.|+|+ ||
T Consensus 231 gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gR 308 (413)
T TIGR00382 231 GRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GR 308 (413)
T ss_pred CccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CC
Confidence 1346888898861 0 0224444 49
Q ss_pred eeeEEEeCCCCHHHHHHHHHHH
Q 012016 382 MDVHVHMSYCTPSGFKLLAANY 403 (473)
Q Consensus 382 fd~~I~~~~p~~~~r~~l~~~~ 403 (473)
+|..+.|...+.+....|+...
T Consensus 309 ld~Iv~f~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 309 LPVIATLEKLDEEALIAILTKP 330 (413)
T ss_pred CCeEeecCCCCHHHHHHHHHHH
Confidence 9999999999999988887753
No 124
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=1.2e-11 Score=124.68 Aligned_cols=148 Identities=14% Similarity=0.245 Sum_probs=109.5
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC--------CceEEcccc-
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN--------FDVYDLELT- 287 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~--------~~~~~l~~~- 287 (473)
+|++++|++.+++.+...+. ....++.|||+||+|+|||++|+++|+.+- .+++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~------------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII------------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH------------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 68999999988888766542 123467899999999999999999999762 234344331
Q ss_pred -cccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCce
Q 012016 288 -ELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDER 360 (473)
Q Consensus 288 -~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ 360 (473)
...+...++++..... ..-|++|||+|.+ +....+.||..++. ++++.
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m---------------------~~~a~naLLK~LEe----pp~~t 124 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM---------------------TEQAQNAFLKTIEE----PPKGV 124 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc---------------------CHHHHHHHHHHhcC----CCCCe
Confidence 1123456777666432 4579999999977 24467789999885 34568
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHh
Q 012016 361 IIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYL 404 (473)
Q Consensus 361 iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l 404 (473)
++|++|+.++.+.|+++. |+ .+++|+.|+.++....+...+
T Consensus 125 ~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 125 FIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred EEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 888888889999999998 77 489999999999877666543
No 125
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.43 E-value=4.5e-12 Score=137.74 Aligned_cols=193 Identities=18% Similarity=0.238 Sum_probs=124.9
Q ss_pred cccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceEEccccc
Q 012016 219 ETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLELTE 288 (473)
Q Consensus 219 ~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~l~~~~ 288 (473)
+.|.+.++..++|...|...+.+ ..+...++|+||||||||.+++.+.++| .+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 56777777777777766655542 2223346799999999999999998877 25678888865
Q ss_pred ccCc-----------------------hHHHHHHHHhc----cCceEEEeccccccccccCCccccCCCCCCCccchhHH
Q 012016 289 LRSN-----------------------SDLRTLLVATA----NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVT 341 (473)
Q Consensus 289 ~~~~-----------------------~~l~~l~~~~~----~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (473)
+.+. ..+..+|.... ...||+|||||.+.. ..+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k------------------K~QDV 888 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT------------------KTQKV 888 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc------------------cHHHH
Confidence 4221 12333443321 246999999999853 12334
Q ss_pred HHHHHHHhcccccCCCCceEEEEecCC---CCCCCccccCCCceee-EEEeCCCCHHHHHHHHHHHhCccccCCHHHHHH
Q 012016 342 LSGFLNFIDGLWSSCGDERIIVFTTNH---KEKLDPALLRPGRMDV-HVHMSYCTPSGFKLLAANYLGIKEHILFEEIEE 417 (473)
Q Consensus 342 ls~LL~~ldg~~~~~~~~~iiI~tTN~---~~~ld~aLlrpgRfd~-~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~ 417 (473)
|-.|++... ..+..++||+++|. ++.|+|.+.. ||.. .|.|++++.+++..|+...+......+.+++..
T Consensus 889 LYnLFR~~~----~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIE 962 (1164)
T PTZ00112 889 LFTLFDWPT----KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQ 962 (1164)
T ss_pred HHHHHHHhh----ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 444444322 12346888899986 5677888877 6653 488999999999999998776432223333333
Q ss_pred HHhcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 012016 418 LISTTQVTPAEVAEQLMRNDDPELVLNGLIEFLKV 452 (473)
Q Consensus 418 l~~~~~~t~a~i~~~l~~~~~~~~al~~l~~~l~~ 452 (473)
++.. .....+||++.||+-|..+++.
T Consensus 963 LIAr---------kVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 963 LCAR---------KVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred HHHH---------hhhhcCCHHHHHHHHHHHHHhh
Confidence 3321 0112358999999888888875
No 126
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.43 E-value=5.3e-12 Score=126.93 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=105.9
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC-----CceEEccc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FDVYDLEL 286 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~-----~~~~~l~~ 286 (473)
...|.+|++++|.+++++.+...+ ... . ..++|||||||||||++++++++.+. .+++.++.
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i----~~~-------~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYV----KEK-------N--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHH----hCC-------C--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 567799999999988777665543 221 1 22589999999999999999999873 34455544
Q ss_pred ccccCchHHHHHHHH----h----ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCC
Q 012016 287 TELRSNSDLRTLLVA----T----ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGD 358 (473)
Q Consensus 287 ~~~~~~~~l~~l~~~----~----~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 358 (473)
++......++..+.. . ..+.+|+|||+|.+.. .....|+..++... .
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------------------~~~~~L~~~le~~~----~ 131 (319)
T PRK00440 77 SDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------------------DAQQALRRTMEMYS----Q 131 (319)
T ss_pred ccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------------------HHHHHHHHHHhcCC----C
Confidence 433222223222221 1 1346999999998732 12345666666432 3
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc
Q 012016 359 ERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE 408 (473)
Q Consensus 359 ~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~ 408 (473)
...+|+++|.+..+.+++.+ |+. .++|+.++.++...++..++...+
T Consensus 132 ~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~ 178 (319)
T PRK00440 132 NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEG 178 (319)
T ss_pred CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcC
Confidence 35677788888888888887 765 589999999999888888776543
No 127
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.43 E-value=2.1e-12 Score=135.45 Aligned_cols=152 Identities=16% Similarity=0.252 Sum_probs=98.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccC-------chHHHHHHHHhccCceEEEeccccccccccCC
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRS-------NSDLRTLLVATANRSILVVEDIDCTIDLQDRL 323 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~-------~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~ 323 (473)
++++||||||+|||+|++|+|+++ +..+++++...+.. ............+..+|+||||+.+.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~----- 216 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG----- 216 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC-----
Confidence 579999999999999999999987 67888887755421 111212222235678999999998742
Q ss_pred ccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCC-C---CCCCccccCCCcee--eEEEeCCCCHHHHH
Q 012016 324 PADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNH-K---EKLDPALLRPGRMD--VHVHMSYCTPSGFK 397 (473)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~-~---~~ld~aLlrpgRfd--~~I~~~~p~~~~r~ 397 (473)
....+..+..++|.+ ... +..+|+|+|. | ..++++|.+ ||. ..+.++.|+.+.+.
T Consensus 217 -----------k~~~qeelf~l~N~l---~~~---~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~ 277 (445)
T PRK12422 217 -----------KGATQEEFFHTFNSL---HTE---GKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLR 277 (445)
T ss_pred -----------ChhhHHHHHHHHHHH---HHC---CCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHH
Confidence 111233333444433 221 2345555554 4 356789988 885 88999999999999
Q ss_pred HHHHHHhCccccCCHHHHHH-HHhcCCCCHHHH
Q 012016 398 LLAANYLGIKEHILFEEIEE-LISTTQVTPAEV 429 (473)
Q Consensus 398 ~l~~~~l~~~~~~l~~~i~~-l~~~~~~t~a~i 429 (473)
.+++......+..+.+++.. ++....-...++
T Consensus 278 ~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L 310 (445)
T PRK12422 278 SFLERKAEALSIRIEETALDFLIEALSSNVKSL 310 (445)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Confidence 99998887665555555555 444433334333
No 128
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=1.5e-11 Score=125.87 Aligned_cols=152 Identities=18% Similarity=0.287 Sum_probs=111.6
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------- 279 (473)
.+|.++++|+|+++.++.+.+.+.. ...+.++||+||+|+||+++|.++|+.+-.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 5889999999999888887654431 234678999999999999999999998721
Q ss_pred ---------------------ceEEcccc--c-------ccCchHHHHHHHHhc------cCceEEEeccccccccccCC
Q 012016 280 ---------------------DVYDLELT--E-------LRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRL 323 (473)
Q Consensus 280 ---------------------~~~~l~~~--~-------~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~ 323 (473)
+++.+... + ...-..++++..... .+.|++|||+|.+
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------- 153 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------- 153 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------
Confidence 11222110 1 012244555554432 4679999999977
Q ss_pred ccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012016 324 PADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANY 403 (473)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~ 403 (473)
+....+.||..++.. +...++|++|+.++.+.|.+++ |+ .+|.|+.|+.++...++...
T Consensus 154 --------------~~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 154 --------------NANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred --------------CHHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHh
Confidence 346678899888753 3457888999999999999887 87 58999999999988888765
Q ss_pred h
Q 012016 404 L 404 (473)
Q Consensus 404 l 404 (473)
.
T Consensus 213 ~ 213 (365)
T PRK07471 213 G 213 (365)
T ss_pred c
Confidence 4
No 129
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=2e-12 Score=135.73 Aligned_cols=190 Identities=17% Similarity=0.281 Sum_probs=114.3
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEccc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLEL 286 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~~ 286 (473)
+.+..+|++++..+.-. .....+..+...+ | +...++||||||||||+|++|+|+++ +..++++++
T Consensus 98 l~~~~tFdnFv~g~~n~-~a~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 98 LNPDYTFENFVVGPGNS-FAYHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCCCcccccccCCchH-HHHHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 45557899987433322 2233333333221 1 23469999999999999999999986 457788776
Q ss_pred ccccC-------chHHHHHHHHhc-cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCC
Q 012016 287 TELRS-------NSDLRTLLVATA-NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGD 358 (473)
Q Consensus 287 ~~~~~-------~~~l~~l~~~~~-~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 358 (473)
.++.. ...+........ ++.+|+|||++.+.+ . ..+...|+..++.+... .
T Consensus 169 ~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~----------------~---~~~q~elf~~~n~l~~~--~ 227 (440)
T PRK14088 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG----------------K---TGVQTELFHTFNELHDS--G 227 (440)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC----------------c---HHHHHHHHHHHHHHHHc--C
Confidence 65421 111222222222 578999999998753 0 11122344444444332 2
Q ss_pred ceEEEEecCCCCC---CCccccCCCce--eeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHH-hcCCCCHHHHHHH
Q 012016 359 ERIIVFTTNHKEK---LDPALLRPGRM--DVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELI-STTQVTPAEVAEQ 432 (473)
Q Consensus 359 ~~iiI~tTN~~~~---ld~aLlrpgRf--d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~-~~~~~t~a~i~~~ 432 (473)
..+||.+.+.|.. +++.+.. || ...+.+..|+.+.|..|++..+......+.+++...+ +...-+..++...
T Consensus 228 k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 228 KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHH
Confidence 2444444455544 5567777 66 4678999999999999999988765555555554444 3334455555444
Q ss_pred H
Q 012016 433 L 433 (473)
Q Consensus 433 l 433 (473)
+
T Consensus 306 l 306 (440)
T PRK14088 306 I 306 (440)
T ss_pred H
Confidence 4
No 130
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.41 E-value=2.1e-12 Score=145.98 Aligned_cols=157 Identities=18% Similarity=0.252 Sum_probs=109.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceEE
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 283 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~ 283 (473)
.|..++.++|.++....+++.+. ++ .+.+.+|+||||||||++++++|..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~----r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS----RR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh----cC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 44678899998876555554432 21 25689999999999999999999986 678888
Q ss_pred cccccccC--------chHHHHHHHHhc---cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc
Q 012016 284 LELTELRS--------NSDLRTLLVATA---NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL 352 (473)
Q Consensus 284 l~~~~~~~--------~~~l~~l~~~~~---~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 352 (473)
++++.+.. +..+..++.... .++||||||||.+..... ........+-|...+
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~-------------~~~~~d~~~~Lk~~l--- 298 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGK-------------AEGAMDAGNMLKPAL--- 298 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCC-------------CcchhHHHHHhchhh---
Confidence 88776521 235677776553 579999999999864110 000111222222222
Q ss_pred ccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 353 WSSCGDERIIVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 353 ~~~~~~~~iiI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
. .+++.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+..
T Consensus 299 --~-~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 299 --A-RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred --h-cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHH
Confidence 1 24588888888764 47999999 996 589999999999999886543
No 131
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=1.3e-11 Score=125.80 Aligned_cols=180 Identities=15% Similarity=0.172 Sum_probs=120.2
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------ce----
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-------DV---- 281 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~-------~~---- 281 (473)
.||..|+.|+|+++.+..+...+. + ...+..+||+||+|+|||+++..+|+.+.. +.
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~----~--------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR----E--------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH----c--------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 689999999999988877655433 1 123568999999999999999999998843 11
Q ss_pred -------------------EEcccc---------cccCchHHHHHHHHhc------cCceEEEeccccccccccCCcccc
Q 012016 282 -------------------YDLELT---------ELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADI 327 (473)
Q Consensus 282 -------------------~~l~~~---------~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~ 327 (473)
+.+... ...+...++++..... ..-|++|||+|.+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------- 153 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------- 153 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------
Confidence 111100 0011233444333221 4579999999987
Q ss_pred CCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 328 AGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 328 ~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+....+.||..++.. +...++|+.|+.++.+.|.++. |+ .+++|+.|+.++...++.......
T Consensus 154 ----------~~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~ 216 (351)
T PRK09112 154 ----------NRNAANAILKTLEEP----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQ 216 (351)
T ss_pred ----------CHHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhccc
Confidence 245567799988763 3456777778889999999987 88 699999999999988888742221
Q ss_pred ccCCHHHHHHHHhcCCCCHHHHHHHH
Q 012016 408 EHILFEEIEELISTTQVTPAEVAEQL 433 (473)
Q Consensus 408 ~~~l~~~i~~l~~~~~~t~a~i~~~l 433 (473)
. ...+.+..++...+-+|....+++
T Consensus 217 ~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 217 G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 223344455555555665444443
No 132
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.37 E-value=5.8e-12 Score=110.18 Aligned_cols=115 Identities=28% Similarity=0.420 Sum_probs=80.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCchHHHH-----------HHHHhccCceEEEeccccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNSDLRT-----------LLVATANRSILVVEDIDCTID 318 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~~-----------l~~~~~~~sIL~iDdiD~l~~ 318 (473)
.++++++||||||||++++.+++.+ +.+++.+++........... .......+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 5689999999999999999999999 89999999887643322221 112234679999999997621
Q ss_pred cccCCccccCCCCCCCccchhHHHHHHHHHhcccccC--CCCceEEEEecCCCC--CCCccccCCCceeeEEEeCC
Q 012016 319 LQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSS--CGDERIIVFTTNHKE--KLDPALLRPGRMDVHVHMSY 390 (473)
Q Consensus 319 ~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~--~~~~~iiI~tTN~~~--~ld~aLlrpgRfd~~I~~~~ 390 (473)
.....++..+...... ...+..+|+++|... .+++.+.. ||+.+|++++
T Consensus 99 ---------------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 99 ---------------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred ---------------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 2233444444443221 124578888888876 67788887 9998888763
No 133
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=8.9e-12 Score=131.11 Aligned_cols=187 Identities=15% Similarity=0.282 Sum_probs=115.9
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEcccccc
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELTEL 289 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~~~~~ 289 (473)
+.+|++++..+.- +.....+..+...+ |.. .++++||||+|||||+|++|+++++ +..++++++.++
T Consensus 111 ~~tFdnFv~g~~n-~~A~~aa~~~a~~~------~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSN-EQAFIAVQTVSKNP------GIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcH-HHHHHHHHHHHhCc------Ccc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 4688888744432 22333343333221 222 3479999999999999999999965 467788877664
Q ss_pred cCc---------hHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCce
Q 012016 290 RSN---------SDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDER 360 (473)
Q Consensus 290 ~~~---------~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ 360 (473)
... ..+.+......+..+|+|||++.+.. .......+..++|.+. .. + .
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~----------------k~~~~e~lf~l~N~~~---~~--~-k 240 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY----------------KEKTNEIFFTIFNNFI---EN--D-K 240 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC----------------CHHHHHHHHHHHHHHH---Hc--C-C
Confidence 211 22333334445678999999997742 1122334444454443 22 1 2
Q ss_pred EEEEecCC-CC---CCCccccCCCcee--eEEEeCCCCHHHHHHHHHHHhCcccc--CCHHH-HHHHHhcCCCCHHHHHH
Q 012016 361 IIVFTTNH-KE---KLDPALLRPGRMD--VHVHMSYCTPSGFKLLAANYLGIKEH--ILFEE-IEELISTTQVTPAEVAE 431 (473)
Q Consensus 361 iiI~tTN~-~~---~ld~aLlrpgRfd--~~I~~~~p~~~~r~~l~~~~l~~~~~--~l~~~-i~~l~~~~~~t~a~i~~ 431 (473)
.+|+|+|. |+ .+++.|.. ||. ..+.+..|+.+++..++++.+...+. .+.++ +.-++....-.+..+..
T Consensus 241 ~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~g 318 (450)
T PRK14087 241 QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKG 318 (450)
T ss_pred cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHH
Confidence 45566654 43 45788888 884 77889999999999999998865432 34344 44444455566666655
Q ss_pred HH
Q 012016 432 QL 433 (473)
Q Consensus 432 ~l 433 (473)
.|
T Consensus 319 aL 320 (450)
T PRK14087 319 SV 320 (450)
T ss_pred HH
Confidence 55
No 134
>PRK06620 hypothetical protein; Validated
Probab=99.36 E-value=1.8e-11 Score=116.50 Aligned_cols=150 Identities=16% Similarity=0.238 Sum_probs=95.0
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCC-CceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAW-KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR 290 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~-~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~ 290 (473)
..++-+|++++..+.- +.....+..+.. .++..+ .+.++||||||||||+|++++|+..+..++ +....
T Consensus 9 ~~~~~tfd~Fvvg~~N-~~a~~~~~~~~~------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~- 78 (214)
T PRK06620 9 TSSKYHPDEFIVSSSN-DQAYNIIKNWQC------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF- 78 (214)
T ss_pred CCCCCCchhhEecccH-HHHHHHHHHHHH------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh-
Confidence 3445689998765422 223444443332 122222 478999999999999999999999876332 21111
Q ss_pred CchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCC
Q 012016 291 SNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKE 370 (473)
Q Consensus 291 ~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~ 370 (473)
.. .. ..+..+|+|||||.+ ....+..++|.+.. . +..++|.++..|.
T Consensus 79 -~~---~~---~~~~d~lliDdi~~~---------------------~~~~lf~l~N~~~e---~--g~~ilits~~~p~ 125 (214)
T PRK06620 79 -NE---EI---LEKYNAFIIEDIENW---------------------QEPALLHIFNIINE---K--QKYLLLTSSDKSR 125 (214)
T ss_pred -ch---hH---HhcCCEEEEeccccc---------------------hHHHHHHHHHHHHh---c--CCEEEEEcCCCcc
Confidence 11 11 234579999999843 12345556655542 2 2366666665554
Q ss_pred C--CCccccCCCcee--eEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 371 K--LDPALLRPGRMD--VHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 371 ~--ld~aLlrpgRfd--~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
. + |+|+. |+. ..+++..|+.+.+..++.......
T Consensus 126 ~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 126 NFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred ccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 4 5 78887 875 468999999999999998776543
No 135
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.36 E-value=1.1e-11 Score=138.14 Aligned_cols=155 Identities=17% Similarity=0.315 Sum_probs=108.2
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCC----CCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCch--
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNS-- 293 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~-- 293 (473)
.|+|+++.++.|.+.+... +.|.. |...+||+||||||||+||+++|..++.+++.+++++.....
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 4566666666665544321 22321 223589999999999999999999999999999987753211
Q ss_pred -----------------HHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc--c
Q 012016 294 -----------------DLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW--S 354 (473)
Q Consensus 294 -----------------~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~--~ 354 (473)
.+.+.+. ....+||+|||||.+- ....+.||+.||.-. .
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~---------------------~~~~~~Ll~~ld~g~~~d 584 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAH---------------------PDIYNILLQVMDYATLTD 584 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcC---------------------HHHHHHHHHhhccCeeec
Confidence 1222222 2356899999999762 346677888887531 1
Q ss_pred CCC-----CceEEEEecCCCC-------------------------CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHh
Q 012016 355 SCG-----DERIIVFTTNHKE-------------------------KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYL 404 (473)
Q Consensus 355 ~~~-----~~~iiI~tTN~~~-------------------------~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l 404 (473)
..| .+.+||+|||... .+.|.|+. |||.+|.|...+.++...|+.+.+
T Consensus 585 ~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 585 NNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred CCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHH
Confidence 111 3578999998631 24566766 999999999999999999999887
Q ss_pred Cc
Q 012016 405 GI 406 (473)
Q Consensus 405 ~~ 406 (473)
..
T Consensus 663 ~~ 664 (731)
T TIGR02639 663 DE 664 (731)
T ss_pred HH
Confidence 53
No 136
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.35 E-value=1.6e-11 Score=138.36 Aligned_cols=152 Identities=22% Similarity=0.307 Sum_probs=108.1
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceEEcc
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLE 285 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~l~ 285 (473)
..++.++|.++..+.+++.+. + ..+++++|+||||||||++++++|..+ +.+++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~----r---------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG----R---------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc----c---------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 357788888877777766543 2 125689999999999999999999987 47899999
Q ss_pred cccccC--------chHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHH-HHhccccc
Q 012016 286 LTELRS--------NSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFL-NFIDGLWS 354 (473)
Q Consensus 286 ~~~~~~--------~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL-~~ldg~~~ 354 (473)
++.+.. +..++.++..+. .++||||||||.+++.... .+ ....+.+| ..+.
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~---------~g-----~~~~a~lLkp~l~---- 304 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA---------EG-----AIDAANILKPALA---- 304 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC---------CC-----cccHHHHhHHHHh----
Confidence 876531 246777877654 4789999999999752110 01 11122233 2222
Q ss_pred CCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012016 355 SCGDERIIVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANY 403 (473)
Q Consensus 355 ~~~~~~iiI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~ 403 (473)
.+++.+|++|+..+ ..||+|.+ ||. .|.++.|+.++...|++..
T Consensus 305 --rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 305 --RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred --CCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHH
Confidence 24578888888664 47999999 996 5899999999988887754
No 137
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.35 E-value=1.7e-11 Score=123.62 Aligned_cols=156 Identities=22% Similarity=0.263 Sum_probs=103.9
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-------CCceEEc--
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-------NFDVYDL-- 284 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-------~~~~~~l-- 284 (473)
.|.+|++++|+++.++.+.-.+.. +-..++||+||||||||++++++|+.+ +.++-..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 467899999999988876542211 112479999999999999999999998 3221110
Q ss_pred c----c--------------------c----cccCchHHHHHHH-----------HhccCceEEEeccccccccccCCcc
Q 012016 285 E----L--------------------T----ELRSNSDLRTLLV-----------ATANRSILVVEDIDCTIDLQDRLPA 325 (473)
Q Consensus 285 ~----~--------------------~----~~~~~~~l~~l~~-----------~~~~~sIL~iDdiD~l~~~~~r~~~ 325 (473)
. + + .+.+.-.+...+. ...++.+|++|||+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl--------- 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL--------- 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------
Confidence 0 0 0 0111111111111 1124579999999977
Q ss_pred ccCCCCCCCccchhHHHHHHHHHhcccc---------cCCCCceEEEEecCCCC-CCCccccCCCceeeEEEeCCCCH-H
Q 012016 326 DIAGEGEGPIQQNKVTLSGFLNFIDGLW---------SSCGDERIIVFTTNHKE-KLDPALLRPGRMDVHVHMSYCTP-S 394 (473)
Q Consensus 326 ~~~~~~~~~~~~~~~~ls~LL~~ldg~~---------~~~~~~~iiI~tTN~~~-~ld~aLlrpgRfd~~I~~~~p~~-~ 394 (473)
...+.+.|++.|+.-. ...+...++|+|+|..+ .++++|+. ||...|.+++|.. +
T Consensus 141 ------------~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~ 206 (334)
T PRK13407 141 ------------EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVE 206 (334)
T ss_pred ------------CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHH
Confidence 2456777888775321 11234577888888654 68999999 9999999999988 8
Q ss_pred HHHHHHHHHhC
Q 012016 395 GFKLLAANYLG 405 (473)
Q Consensus 395 ~r~~l~~~~l~ 405 (473)
++.+++.+...
T Consensus 207 e~~~il~~~~~ 217 (334)
T PRK13407 207 TRVEVIRRRDA 217 (334)
T ss_pred HHHHHHHHhhc
Confidence 88999987544
No 138
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.35 E-value=4.6e-12 Score=126.35 Aligned_cols=129 Identities=19% Similarity=0.198 Sum_probs=91.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHH--------------H-----HHHHhccCceEEEecc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLR--------------T-----LLVATANRSILVVEDI 313 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~--------------~-----l~~~~~~~sIL~iDdi 313 (473)
.+.+||.||||||||++++.+|..++.+++.+++.......++. . +......+.+|++||+
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 56899999999999999999999999999998876642211110 0 1112246788999999
Q ss_pred ccccccccCCccccCCCCCCCccchhHHHHHHHHHhcc--cc---c-----CCCCceEEEEecCCCC------------C
Q 012016 314 DCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDG--LW---S-----SCGDERIIVFTTNHKE------------K 371 (473)
Q Consensus 314 D~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg--~~---~-----~~~~~~iiI~tTN~~~------------~ 371 (473)
|..- ..+++.|...+|. .. . .+.....+|+|.|..+ .
T Consensus 144 n~a~---------------------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~ 202 (327)
T TIGR01650 144 DAGR---------------------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQ 202 (327)
T ss_pred hccC---------------------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeec
Confidence 9762 2344444444441 10 0 1223467899999864 4
Q ss_pred CCccccCCCceeeEEEeCCCCHHHHHHHHHHHh
Q 012016 372 LDPALLRPGRMDVHVHMSYCTPSGFKLLAANYL 404 (473)
Q Consensus 372 ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l 404 (473)
+++|++. ||-..+.++||+.+.-..|+....
T Consensus 203 l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 203 INQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 6889999 998889999999999999887654
No 139
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.35 E-value=1.6e-11 Score=133.84 Aligned_cols=173 Identities=20% Similarity=0.333 Sum_probs=111.4
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceE
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 282 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~ 282 (473)
..|.+|++++|.+...+.++..+. .+.+..++|+||||||||++|+++++.. +.+++
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 347899999999887777654331 1224579999999999999999998766 35678
Q ss_pred EcccccccCc-hHHH----------------HHHHH------------hccCceEEEeccccccccccCCccccCCCCCC
Q 012016 283 DLELTELRSN-SDLR----------------TLLVA------------TANRSILVVEDIDCTIDLQDRLPADIAGEGEG 333 (473)
Q Consensus 283 ~l~~~~~~~~-~~l~----------------~l~~~------------~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~ 333 (473)
.+++..+..+ ..+. +.+.. ..++++|||||++.+-.
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------------- 279 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------------- 279 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH---------------
Confidence 8887654211 1110 11111 12467999999987732
Q ss_pred CccchhHHHHHHHHHhccc--------c----------------cCCCCceEEEE-ecCCCCCCCccccCCCceeeEEEe
Q 012016 334 PIQQNKVTLSGFLNFIDGL--------W----------------SSCGDERIIVF-TTNHKEKLDPALLRPGRMDVHVHM 388 (473)
Q Consensus 334 ~~~~~~~~ls~LL~~ldg~--------~----------------~~~~~~~iiI~-tTN~~~~ld~aLlrpgRfd~~I~~ 388 (473)
.....|+..|+.- + ...+..+++|+ ||+.++.++++|++ ||. .++|
T Consensus 280 ------~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~ 350 (615)
T TIGR02903 280 ------LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFF 350 (615)
T ss_pred ------HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEe
Confidence 2233344444221 0 01122345554 66778899999988 986 5789
Q ss_pred CCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC
Q 012016 389 SYCTPSGFKLLAANYLGIKEHILFEEIEELISTT 422 (473)
Q Consensus 389 ~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~ 422 (473)
+.++.++...|+++++......+.+++..++...
T Consensus 351 ~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~y 384 (615)
T TIGR02903 351 EPLTPEDIALIVLNAAEKINVHLAAGVEELIARY 384 (615)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHC
Confidence 9999999999999987654333444555555443
No 140
>PHA02244 ATPase-like protein
Probab=99.34 E-value=1.4e-11 Score=124.14 Aligned_cols=119 Identities=20% Similarity=0.316 Sum_probs=82.2
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccc----c----cCchHHH--HHHHHhccCceEEEeccccccccccCC
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTE----L----RSNSDLR--TLLVATANRSILVVEDIDCTIDLQDRL 323 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~----~----~~~~~l~--~l~~~~~~~sIL~iDdiD~l~~~~~r~ 323 (473)
..+||+||||||||++|++||..++.+++.++... + .....+. .++....++.+|+|||++.+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~------ 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASI------ 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCC------
Confidence 47999999999999999999999999999876321 1 0111111 334445688999999999763
Q ss_pred ccccCCCCCCCccchhHHHHHHHHHhcc-c------ccCCCCceEEEEecCCC-----------CCCCccccCCCceeeE
Q 012016 324 PADIAGEGEGPIQQNKVTLSGFLNFIDG-L------WSSCGDERIIVFTTNHK-----------EKLDPALLRPGRMDVH 385 (473)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~ls~LL~~ldg-~------~~~~~~~~iiI~tTN~~-----------~~ld~aLlrpgRfd~~ 385 (473)
..++..|...++. . .-....+..+|+|+|.+ ..|++|++. || .+
T Consensus 194 ---------------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~ 255 (383)
T PHA02244 194 ---------------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-AP 255 (383)
T ss_pred ---------------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EE
Confidence 2334444444431 1 01122457899999973 578999999 99 57
Q ss_pred EEeCCCCHHHH
Q 012016 386 VHMSYCTPSGF 396 (473)
Q Consensus 386 I~~~~p~~~~r 396 (473)
|+|++|+..+.
T Consensus 256 I~~dyp~~~E~ 266 (383)
T PHA02244 256 IEFDYDEKIEH 266 (383)
T ss_pred eeCCCCcHHHH
Confidence 99999984443
No 141
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.34 E-value=4.4e-11 Score=127.00 Aligned_cols=164 Identities=18% Similarity=0.284 Sum_probs=115.5
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHh---c--------------hhHH----hhhcCCCCceeEEeCCCCCCHHHH
Q 012016 211 NLDHPATFETLAMEQEQKTKIMQDLERFVK---R--------------KDYY----RRVGKAWKRGYLLYGPPGTGKSSL 269 (473)
Q Consensus 211 ~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~---~--------------~~~y----~~~g~~~~rg~LL~GPpGtGKT~l 269 (473)
....|..|.+|.+++.+...++..|+.|-- + ++.+ ...+.|.++-+||+||||-|||||
T Consensus 263 dky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTL 342 (877)
T KOG1969|consen 263 DKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTL 342 (877)
T ss_pred cccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHH
Confidence 356778999999999999999998876521 1 1111 112566777899999999999999
Q ss_pred HHHHHHhcCCceEEcccccccCchHHHHHHHHh----------ccCceEEEeccccccccccCCccccCCCCCCCccchh
Q 012016 270 IAAMANYLNFDVYDLELTELRSNSDLRTLLVAT----------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNK 339 (473)
Q Consensus 270 a~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~----------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~ 339 (473)
|+.+|+..||.+++++.++-.+...+++.+..+ .+|..|||||||-.. .
T Consensus 343 AHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~---------------------~ 401 (877)
T KOG1969|consen 343 AHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP---------------------R 401 (877)
T ss_pred HHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc---------------------H
Confidence 999999999999999999988877777666543 368899999998432 2
Q ss_pred HHHHHHHHHhc--ccccCCC---------------CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHH
Q 012016 340 VTLSGFLNFID--GLWSSCG---------------DERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFK 397 (473)
Q Consensus 340 ~~ls~LL~~ld--g~~~~~~---------------~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~ 397 (473)
..+..++..+. +....+. =.+-||+.+|.. .-|||+.---+...|+|..|......
T Consensus 402 ~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv 474 (877)
T KOG1969|consen 402 AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLV 474 (877)
T ss_pred HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHH
Confidence 23333333332 1100000 126799999964 45787521157788999998887644
No 142
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.32 E-value=5.7e-12 Score=124.23 Aligned_cols=150 Identities=19% Similarity=0.308 Sum_probs=98.3
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCc---eEEccccccc
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELTELR 290 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~---~~~l~~~~~~ 290 (473)
.|.++++++|++.+.-+ -..+...+.... -.+++||||||||||+||+.|++-..-+ ++.++....
T Consensus 133 RPktL~dyvGQ~hlv~q-~gllrs~ieq~~---------ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a- 201 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQ-DGLLRSLIEQNR---------IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA- 201 (554)
T ss_pred CcchHHHhcchhhhcCc-chHHHHHHHcCC---------CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-
Confidence 46788888887654433 112222222111 3479999999999999999999988655 555554443
Q ss_pred CchHHHHHHHHhc-------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEE
Q 012016 291 SNSDLRTLLVATA-------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIV 363 (473)
Q Consensus 291 ~~~~l~~l~~~~~-------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI 363 (473)
+..+++.+|.... ++.|||||||+..-. .-...||-.++ + +.+++|
T Consensus 202 ~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk---------------------sQQD~fLP~VE-----~-G~I~lI 254 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK---------------------SQQDTFLPHVE-----N-GDITLI 254 (554)
T ss_pred chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh---------------------hhhhcccceec-----c-CceEEE
Confidence 3467888887653 689999999987621 11122343332 2 246666
Q ss_pred E-ecCCC-CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHh
Q 012016 364 F-TTNHK-EKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYL 404 (473)
Q Consensus 364 ~-tTN~~-~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l 404 (473)
+ ||..| -.|..||+. |+ .++-+...+.+....|+.+-+
T Consensus 255 GATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred ecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHH
Confidence 5 55555 578899998 76 456777788888888887633
No 143
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.32 E-value=3.2e-11 Score=112.37 Aligned_cols=124 Identities=21% Similarity=0.288 Sum_probs=90.8
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcCC------------------------ceEEcccccc-cCchHHHHHHHHhc---
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLELTEL-RSNSDLRTLLVATA--- 303 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~~------------------------~~~~l~~~~~-~~~~~l~~l~~~~~--- 303 (473)
.+..||||||+|+|||++++++++.+.. ++..++.... .+.+.++.++....
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 4568999999999999999999998732 2333322211 12345655555442
Q ss_pred ---cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCC
Q 012016 304 ---NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPG 380 (473)
Q Consensus 304 ---~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpg 380 (473)
...|+||||+|.+. ....+.||..|+.. +...++|++||.+..+.+++.+
T Consensus 93 ~~~~~kviiide~~~l~---------------------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~s-- 145 (188)
T TIGR00678 93 QESGRRVVIIEDAERMN---------------------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRS-- 145 (188)
T ss_pred ccCCeEEEEEechhhhC---------------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHh--
Confidence 45799999999873 23466788888753 3457788888888999999998
Q ss_pred ceeeEEEeCCCCHHHHHHHHHHH
Q 012016 381 RMDVHVHMSYCTPSGFKLLAANY 403 (473)
Q Consensus 381 Rfd~~I~~~~p~~~~r~~l~~~~ 403 (473)
|+ ..++|+.|+.++...++...
T Consensus 146 r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 146 RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred hc-EEeeCCCCCHHHHHHHHHHc
Confidence 77 48999999999988777765
No 144
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.30 E-value=2.1e-12 Score=114.20 Aligned_cols=105 Identities=30% Similarity=0.427 Sum_probs=73.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHH---------------HhccCceEEEecccccccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLV---------------ATANRSILVVEDIDCTIDL 319 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~---------------~~~~~sIL~iDdiD~l~~~ 319 (473)
++||+||||||||++++.+|..++.+++.+.++...+..+|..... ...++.|++||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a--- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRA--- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccC---
Confidence 5899999999999999999999999999998887644443321111 1126799999999865
Q ss_pred ccCCccccCCCCCCCccchhHHHHHHHHHhcccccC----------CCC-----ceEEEEecCCCC----CCCccccCCC
Q 012016 320 QDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSS----------CGD-----ERIIVFTTNHKE----KLDPALLRPG 380 (473)
Q Consensus 320 ~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~----------~~~-----~~iiI~tTN~~~----~ld~aLlrpg 380 (473)
...++..|++.++.-.-. ... +..||+|+|..+ .+++||++
T Consensus 78 ------------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~-- 137 (139)
T PF07728_consen 78 ------------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD-- 137 (139)
T ss_dssp -------------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--
T ss_pred ------------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--
Confidence 234555566665532110 111 378999999988 89999999
Q ss_pred ce
Q 012016 381 RM 382 (473)
Q Consensus 381 Rf 382 (473)
||
T Consensus 138 Rf 139 (139)
T PF07728_consen 138 RF 139 (139)
T ss_dssp T-
T ss_pred hC
Confidence 87
No 145
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.3e-11 Score=121.18 Aligned_cols=198 Identities=17% Similarity=0.261 Sum_probs=132.1
Q ss_pred cccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCc-----eEEcccccccCch
Q 012016 219 ETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD-----VYDLELTELRSNS 293 (473)
Q Consensus 219 ~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~-----~~~l~~~~~~~~~ 293 (473)
+.+..-++..+.+...+..++.+.. |.++++|||||||||..++-++.++.-+ ++++||....+..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~---------p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGER---------PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCC---------CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 3477888888888887776665422 4569999999999999999999998443 8889988764322
Q ss_pred H-HHHH------------------------HHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHH
Q 012016 294 D-LRTL------------------------LVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNF 348 (473)
Q Consensus 294 ~-l~~l------------------------~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ 348 (473)
. +.++ +.......||++||+|.+.. . ....+-.|+..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~----------------~--~~~~LY~L~r~ 149 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD----------------K--DGEVLYSLLRA 149 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc----------------c--cchHHHHHHhh
Confidence 1 1111 22222457999999999964 0 11445555544
Q ss_pred hcccccCCCCceEEEEecCCC---CCCCccccCCCce-eeEEEeCCCCHHHHHHHHHHHhCc--cccCCHHHHHHHHhcC
Q 012016 349 IDGLWSSCGDERIIVFTTNHK---EKLDPALLRPGRM-DVHVHMSYCTPSGFKLLAANYLGI--KEHILFEEIEELISTT 422 (473)
Q Consensus 349 ldg~~~~~~~~~iiI~tTN~~---~~ld~aLlrpgRf-d~~I~~~~p~~~~r~~l~~~~l~~--~~~~l~~~i~~l~~~~ 422 (473)
.+.. ...+++|+.+|.. +.+||.+.. ++ ..+|.||+.+.+|...|+...... ......+.+-.++..
T Consensus 150 ~~~~----~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~- 222 (366)
T COG1474 150 PGEN----KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAA- 222 (366)
T ss_pred cccc----ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHH-
Confidence 3332 3457888988876 578888875 44 356999999999999999987652 233344444433321
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhccc
Q 012016 423 QVTPAEVAEQLMRNDDPELVLNGLIEFLKVKRKEDE 458 (473)
Q Consensus 423 ~~t~a~i~~~l~~~~~~~~al~~l~~~l~~~~~~~~ 458 (473)
-....+||+..|++-+-.+.+...+...
T Consensus 223 --------~~a~~~GDAR~aidilr~A~eiAe~~~~ 250 (366)
T COG1474 223 --------LVAAESGDARKAIDILRRAGEIAEREGS 250 (366)
T ss_pred --------HHHHcCccHHHHHHHHHHHHHHHHhhCC
Confidence 1112346888888888877776665433
No 146
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.29 E-value=1.9e-11 Score=123.75 Aligned_cols=154 Identities=21% Similarity=0.301 Sum_probs=103.6
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------ceE------
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-------DVY------ 282 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~-------~~~------ 282 (473)
-+|.+|+|+++.|..++..+..+ ...|+||.||+|||||++++++++.+.. |+.
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p 80 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDP 80 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCCh
Confidence 47999999999999987765532 2358999999999999999999888731 111
Q ss_pred ----------------------Ecccccc---cCch------HHHHHHHH-----------hccCceEEEeccccccccc
Q 012016 283 ----------------------DLELTEL---RSNS------DLRTLLVA-----------TANRSILVVEDIDCTIDLQ 320 (473)
Q Consensus 283 ----------------------~l~~~~~---~~~~------~l~~l~~~-----------~~~~sIL~iDdiD~l~~~~ 320 (473)
.+.+..+ .++. ++.+.+.. ..++++|++|||+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~--- 157 (350)
T CHL00081 81 ELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD--- 157 (350)
T ss_pred hhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC---
Confidence 0000000 0111 12222211 2246899999999873
Q ss_pred cCCccccCCCCCCCccchhHHHHHHHHHhcc---------cccCCCCceEEEEecCCCC-CCCccccCCCceeeEEEeCC
Q 012016 321 DRLPADIAGEGEGPIQQNKVTLSGFLNFIDG---------LWSSCGDERIIVFTTNHKE-KLDPALLRPGRMDVHVHMSY 390 (473)
Q Consensus 321 ~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~~~~~~~~iiI~tTN~~~-~ld~aLlrpgRfd~~I~~~~ 390 (473)
..+.+.|++.|+. .....+...++|+|.|..+ .+.++|+. ||.++|.+.+
T Consensus 158 ------------------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~ 217 (350)
T CHL00081 158 ------------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRT 217 (350)
T ss_pred ------------------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCC
Confidence 3456667777743 1111223466667777554 69999999 9999999999
Q ss_pred CC-HHHHHHHHHHHhC
Q 012016 391 CT-PSGFKLLAANYLG 405 (473)
Q Consensus 391 p~-~~~r~~l~~~~l~ 405 (473)
|+ .+.+.+|+++...
T Consensus 218 ~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 218 VKDPELRVKIVEQRTS 233 (350)
T ss_pred CCChHHHHHHHHhhhc
Confidence 98 5889999987644
No 147
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.27 E-value=1.9e-11 Score=118.20 Aligned_cols=129 Identities=25% Similarity=0.373 Sum_probs=86.2
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTE 288 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~ 288 (473)
..++.+|+++....+..+.++..+..|..... . ...+++|+||||||||+|+.|||+++ +..++.++..+
T Consensus 65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~---~----~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 65 LHQNCSFENYRVECEGQMNALSKARQYVEEFD---G----NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred cccCCccccccCCCchHHHHHHHHHHHHHhhc---c----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 34567999997665555556666666664211 1 13489999999999999999999998 77888887766
Q ss_pred ccC---------chHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCc
Q 012016 289 LRS---------NSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDE 359 (473)
Q Consensus 289 ~~~---------~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~ 359 (473)
+.. +....+++....+..+|+|||+++... .......+..+++.- .. ..
T Consensus 138 l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~----------------s~~~~~~l~~Ii~~R---y~---~~ 195 (244)
T PRK07952 138 IMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTE----------------SRYEKVIINQIVDRR---SS---SK 195 (244)
T ss_pred HHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCC----------------CHHHHHHHHHHHHHH---Hh---CC
Confidence 531 123345666677889999999987521 122334555555432 11 24
Q ss_pred eEEEEecCCC
Q 012016 360 RIIVFTTNHK 369 (473)
Q Consensus 360 ~iiI~tTN~~ 369 (473)
..+|+|||..
T Consensus 196 ~~tiitSNl~ 205 (244)
T PRK07952 196 RPTGMLTNSN 205 (244)
T ss_pred CCEEEeCCCC
Confidence 6788899864
No 148
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.27 E-value=6.6e-11 Score=120.05 Aligned_cols=130 Identities=25% Similarity=0.296 Sum_probs=90.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHH------HHHH------HHhcc---C---ceEEEeccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDL------RTLL------VATAN---R---SILVVEDID 314 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l------~~l~------~~~~~---~---sIL~iDdiD 314 (473)
.+.+||-||||||||++++++|..++.+++.++|..-...+++ .... .-... . +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 4579999999999999999999999999999998865332222 1111 00111 1 399999998
Q ss_pred cccccccCCccccCCCCCCCccchhHHHHHHHHHhccc-------c-cCCCCceEEEEecC-----CCCCCCccccCCCc
Q 012016 315 CTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL-------W-SSCGDERIIVFTTN-----HKEKLDPALLRPGR 381 (473)
Q Consensus 315 ~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-------~-~~~~~~~iiI~tTN-----~~~~ld~aLlrpgR 381 (473)
.. ...+.+.||..|+.- . -.-....++|+|+| ....|++|+++ |
T Consensus 123 ra---------------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--R 179 (329)
T COG0714 123 RA---------------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--R 179 (329)
T ss_pred cC---------------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--h
Confidence 65 245677788777651 1 11224467888889 34568999999 9
Q ss_pred eeeEEEeCCC-CHHHHHHHHHHHhC
Q 012016 382 MDVHVHMSYC-TPSGFKLLAANYLG 405 (473)
Q Consensus 382 fd~~I~~~~p-~~~~r~~l~~~~l~ 405 (473)
|...++++|| ..++...+......
T Consensus 180 f~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 180 FLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred EEEEEecCCCCchHHHHHHHHhCcc
Confidence 9999999999 55555555554443
No 149
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.7e-11 Score=127.06 Aligned_cols=180 Identities=26% Similarity=0.353 Sum_probs=132.1
Q ss_pred hchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc------CchHHHHHHHHhc--cCceEEEe
Q 012016 240 KRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR------SNSDLRTLLVATA--NRSILVVE 311 (473)
Q Consensus 240 ~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~------~~~~l~~l~~~~~--~~sIL~iD 311 (473)
..++.++..+..++++++++||||||||.+++++|+. +.....++..... ....++.++..+. .++++++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 3456678889999999999999999999999999999 5444555554432 2455666666654 56999999
Q ss_pred ccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCC
Q 012016 312 DIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYC 391 (473)
Q Consensus 312 diD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p 391 (473)
++|.+.+.+.- ..........++++..+|++. .+. ++++..||.+..+|+++++||||+..+.++.|
T Consensus 84 ~~~~~~~~~~~----------~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (494)
T COG0464 84 EIDALAPKRSS----------DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLP 150 (494)
T ss_pred hhhhcccCccc----------cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCC
Confidence 99999763321 112345678999999999987 455 88888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCccccCCHHHHHHHHh-cCCCCHHHHHHHH
Q 012016 392 TPSGFKLLAANYLGIKEHILFEEIEELIS-TTQVTPAEVAEQL 433 (473)
Q Consensus 392 ~~~~r~~l~~~~l~~~~~~l~~~i~~l~~-~~~~t~a~i~~~l 433 (473)
+...+.++..................++. ..+++.+++..++
T Consensus 151 ~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~ 193 (494)
T COG0464 151 DEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALA 193 (494)
T ss_pred CHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHH
Confidence 99999877776543321111222222322 2347777776555
No 150
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=2.2e-10 Score=115.76 Aligned_cols=124 Identities=19% Similarity=0.314 Sum_probs=95.7
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcCC------------------------ceEEccccc---ccCchHHHHHHHHhc-
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLELTE---LRSNSDLRTLLVATA- 303 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~~------------------------~~~~l~~~~---~~~~~~l~~l~~~~~- 303 (473)
.+.+|||+||+|+||+++|.++|+.+.. +++.+.... ..+-+.++++.....
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 3678999999999999999999998832 455554321 224466777665543
Q ss_pred -----cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccC
Q 012016 304 -----NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLR 378 (473)
Q Consensus 304 -----~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlr 378 (473)
..-|++||++|.+ +....+.||+.++.. +++.++|++|+.++.|.|+++.
T Consensus 101 ~~~~~~~kv~iI~~a~~m---------------------~~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~S 155 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAM---------------------NRNAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKS 155 (328)
T ss_pred ccccCCCeEEEECChhhC---------------------CHHHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHh
Confidence 3568899999987 356778899999863 4568999999999999999998
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHH
Q 012016 379 PGRMDVHVHMSYCTPSGFKLLAANY 403 (473)
Q Consensus 379 pgRfd~~I~~~~p~~~~r~~l~~~~ 403 (473)
|+. .+.|+.|+.++....+...
T Consensus 156 --Rc~-~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 156 --RCQ-QQACPLPSNEESLQWLQQA 177 (328)
T ss_pred --hce-eeeCCCcCHHHHHHHHHHh
Confidence 885 5999999999877666654
No 151
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.26 E-value=1.5e-10 Score=130.81 Aligned_cols=162 Identities=15% Similarity=0.255 Sum_probs=109.0
Q ss_pred ccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCchH
Q 012016 218 FETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNSD 294 (473)
Q Consensus 218 f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~ 294 (473)
+..|+|++...+.|...+.....+-. .. ..|...+||+||+|||||++|++||+.+ +.+++.++++.+.....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~---~~-~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS---DP-NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc---CC-CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 34678888887777776654322100 00 0112368999999999999999999988 45788888877643222
Q ss_pred HHHHH---------------HH---hccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc--cc
Q 012016 295 LRTLL---------------VA---TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL--WS 354 (473)
Q Consensus 295 l~~l~---------------~~---~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~--~~ 354 (473)
..+++ .. ....++|+|||++.+- ....+.|++.++.- ..
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~---------------------~~v~~~Ll~ile~g~l~d 701 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH---------------------PDVFNILLQVLDDGRLTD 701 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC---------------------HHHHHHHHHHHhhCceec
Confidence 22222 11 1234899999998762 34567777777531 11
Q ss_pred CC-----CCceEEEEecCCC-------------------------CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHh
Q 012016 355 SC-----GDERIIVFTTNHK-------------------------EKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYL 404 (473)
Q Consensus 355 ~~-----~~~~iiI~tTN~~-------------------------~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l 404 (473)
.. -.+.+||+|||.. ..+.|+|+. |+|.++.|.+++.+....|+..++
T Consensus 702 ~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L 779 (857)
T PRK10865 702 GQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQL 779 (857)
T ss_pred CCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHH
Confidence 11 1246899999972 134577887 999999999999999999999887
Q ss_pred Cc
Q 012016 405 GI 406 (473)
Q Consensus 405 ~~ 406 (473)
..
T Consensus 780 ~~ 781 (857)
T PRK10865 780 QR 781 (857)
T ss_pred HH
Confidence 53
No 152
>PRK09087 hypothetical protein; Validated
Probab=99.26 E-value=1.5e-10 Score=111.09 Aligned_cols=161 Identities=13% Similarity=0.131 Sum_probs=96.4
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc
Q 012016 211 NLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR 290 (473)
Q Consensus 211 ~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~ 290 (473)
...++.+|++++..+.- ..+...+..+. + ...+.++||||+|+|||+|++++|+..+..++... .+.
T Consensus 13 ~~~~~~~~~~Fi~~~~N-~~a~~~l~~~~---------~-~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~ 79 (226)
T PRK09087 13 SHDPAYGRDDLLVTESN-RAAVSLVDHWP---------N-WPSPVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIG 79 (226)
T ss_pred CCCCCCChhceeecCch-HHHHHHHHhcc---------c-CCCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hcc
Confidence 34455689998853211 11333222211 1 11335999999999999999999998776654442 221
Q ss_pred CchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCC
Q 012016 291 SNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKE 370 (473)
Q Consensus 291 ~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~ 370 (473)
...+ ... ...+|+|||+|.+.. .+..+..++|.+. .. +..+||.++..|.
T Consensus 80 -~~~~----~~~-~~~~l~iDDi~~~~~-------------------~~~~lf~l~n~~~---~~--g~~ilits~~~p~ 129 (226)
T PRK09087 80 -SDAA----NAA-AEGPVLIEDIDAGGF-------------------DETGLFHLINSVR---QA--GTSLLMTSRLWPS 129 (226)
T ss_pred -hHHH----Hhh-hcCeEEEECCCCCCC-------------------CHHHHHHHHHHHH---hC--CCeEEEECCCChH
Confidence 1111 111 225899999997521 1233444444443 22 2344544444443
Q ss_pred C---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHHhCccccCCHHHHH
Q 012016 371 K---LDPALLRPGRMD--VHVHMSYCTPSGFKLLAANYLGIKEHILFEEIE 416 (473)
Q Consensus 371 ~---ld~aLlrpgRfd--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~ 416 (473)
. ..|+|+. |+. ..+++..|+.+.+..++++.+...+..+.+++.
T Consensus 130 ~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~ 178 (226)
T PRK09087 130 SWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVV 178 (226)
T ss_pred HhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 2 3678887 875 789999999999999999988765444444443
No 153
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=2.2e-10 Score=115.21 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=117.9
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-----------------
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF----------------- 279 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~----------------- 279 (473)
.|++|+|++.+++.+...+.. ...+.+|||+||+|+||+++|.++|+.+-.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 488999999988877665431 123569999999999999999999998721
Q ss_pred -ceEEcccccc-----------------------cCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCC
Q 012016 280 -DVYDLELTEL-----------------------RSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAG 329 (473)
Q Consensus 280 -~~~~l~~~~~-----------------------~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~ 329 (473)
+++.+..... ..-+.++++..... ...|++||++|.+
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------------- 136 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------------- 136 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-------------
Confidence 2232222100 01124555544432 4589999999987
Q ss_pred CCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcccc
Q 012016 330 EGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEH 409 (473)
Q Consensus 330 ~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~ 409 (473)
+....+.||..|+.. + +.++|++|+.++.|-|+++. |+ ..|+|+.++.++...++......+.
T Consensus 137 --------~~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~- 199 (314)
T PRK07399 137 --------NEAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI- 199 (314)
T ss_pred --------CHHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc-
Confidence 245678899999864 3 45788888899999999998 87 5899999999998888886543221
Q ss_pred CCHHHHHHHHhcCCCCHHHHHHHH
Q 012016 410 ILFEEIEELISTTQVTPAEVAEQL 433 (473)
Q Consensus 410 ~l~~~i~~l~~~~~~t~a~i~~~l 433 (473)
...+...++..++-+|....+.+
T Consensus 200 -~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 200 -LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred -chhHHHHHHHHcCCCHHHHHHHH
Confidence 11123444544455665554433
No 154
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.25 E-value=5.5e-11 Score=121.67 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=50.7
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcC-CCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL 289 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~-~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~ 289 (473)
.|+|+++.|+.+...+....++......... -.+.++||+||||||||+++++||..++.+++.++++.+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 3789999999987766543322111001111 125789999999999999999999999999999987644
No 155
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=4e-10 Score=114.26 Aligned_cols=146 Identities=19% Similarity=0.279 Sum_probs=104.2
Q ss_pred Ccccccc-chHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC----------------
Q 012016 217 TFETLAM-EQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF---------------- 279 (473)
Q Consensus 217 ~f~~l~~-~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~---------------- 279 (473)
.|++|.| ++.+.+.+...+. . ...+..||||||+|+||+++|.++|+.+-.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~----~--------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA----K--------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH----c--------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4677877 6666665544332 1 234678999999999999999999998721
Q ss_pred --------ceEEcccccc-cCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHH
Q 012016 280 --------DVYDLELTEL-RSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSG 344 (473)
Q Consensus 280 --------~~~~l~~~~~-~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~ 344 (473)
++..+....- ...+.++++..... ..-|++|||+|.+ +....+.
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~---------------------~~~a~Na 129 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM---------------------TASAANS 129 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh---------------------CHHHHHH
Confidence 2333322211 12346666655433 4579999999987 2456788
Q ss_pred HHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 012016 345 FLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAAN 402 (473)
Q Consensus 345 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~ 402 (473)
||..|+. +++..++|++|+.++.|.|+++. |+ .+++|+.|+.++....+..
T Consensus 130 LLK~LEE----Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 130 LLKFLEE----PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHhcC----CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 9999985 34568888999999999999998 77 5799999999987666653
No 156
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.23 E-value=7.1e-11 Score=120.81 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=51.1
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhc-CCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL 289 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g-~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~ 289 (473)
-++|+++.|+.+...+....++...-...+ -..|+++||+||||||||++++++|..++.+++.++.+.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 478889999988776664433221111111 1235899999999999999999999999999999986543
No 157
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.23 E-value=3.1e-10 Score=114.78 Aligned_cols=153 Identities=22% Similarity=0.293 Sum_probs=102.2
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-------CCceE-------
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-------NFDVY------- 282 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-------~~~~~------- 282 (473)
+|..|+|+++.|..++-.+..+ ...+++|.||||||||++++++++.+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 5889999999998875544421 13479999999999999999999877 22111
Q ss_pred --------------------------Ecccc----cccCchHHHHHHH-----------HhccCceEEEecccccccccc
Q 012016 283 --------------------------DLELT----ELRSNSDLRTLLV-----------ATANRSILVVEDIDCTIDLQD 321 (473)
Q Consensus 283 --------------------------~l~~~----~~~~~~~l~~l~~-----------~~~~~sIL~iDdiD~l~~~~~ 321 (473)
++... .+.+.-.+...+. ...++.+|+||||+.+.
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~---- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE---- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC----
Confidence 11100 1111112222221 12356899999999872
Q ss_pred CCccccCCCCCCCccchhHHHHHHHHHhcc---------cccCCCCceEEEEecCCCC-CCCccccCCCceeeEEEeCCC
Q 012016 322 RLPADIAGEGEGPIQQNKVTLSGFLNFIDG---------LWSSCGDERIIVFTTNHKE-KLDPALLRPGRMDVHVHMSYC 391 (473)
Q Consensus 322 r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~~~~~~~~iiI~tTN~~~-~ld~aLlrpgRfd~~I~~~~p 391 (473)
..+.+.|++.|+. .........++|+|+|..+ .+.++|+. ||.+++.+++|
T Consensus 145 -----------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p 205 (337)
T TIGR02030 145 -----------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTV 205 (337)
T ss_pred -----------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCC
Confidence 3566777777742 2112223467777777554 68999999 99999999999
Q ss_pred CH-HHHHHHHHHHhC
Q 012016 392 TP-SGFKLLAANYLG 405 (473)
Q Consensus 392 ~~-~~r~~l~~~~l~ 405 (473)
.. +++.+|+.+...
T Consensus 206 ~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 206 RDVELRVEIVERRTE 220 (337)
T ss_pred CCHHHHHHHHHhhhh
Confidence 86 888889887543
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.22 E-value=2.6e-10 Score=129.12 Aligned_cols=160 Identities=18% Similarity=0.285 Sum_probs=108.4
Q ss_pred cccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCchHH
Q 012016 219 ETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNSDL 295 (473)
Q Consensus 219 ~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l 295 (473)
..|+|++...+.+.+.+.....+-. . ...|...+||+||+|||||++|++||..+ +.+++.++++.......+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~-~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---D-PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---C-CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 3577888877777776654321100 0 01123469999999999999999999988 568888888776332222
Q ss_pred HHH---------------H-H--HhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc--cC
Q 012016 296 RTL---------------L-V--ATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW--SS 355 (473)
Q Consensus 296 ~~l---------------~-~--~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~--~~ 355 (473)
..+ + . .....+||+|||||.+ .....+.||+.+|.-. ..
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka---------------------~~~v~~~Ll~~l~~g~l~d~ 699 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA---------------------HPDVFNVLLQVLDDGRLTDG 699 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC---------------------CHHHHHHHHHHHhcCceecC
Confidence 221 1 1 1124589999999976 2456677888775321 11
Q ss_pred C-----CCceEEEEecCCCC-------------------------CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 356 C-----GDERIIVFTTNHKE-------------------------KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 356 ~-----~~~~iiI~tTN~~~-------------------------~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
. -.+.+||+|||... .+.|.|+. |+|.+|.|.+++.+....|+...+.
T Consensus 700 ~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 700 QGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred CCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 1 13578999999731 13466666 9999999999999999999988765
No 159
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.21 E-value=1.9e-10 Score=129.53 Aligned_cols=156 Identities=17% Similarity=0.252 Sum_probs=106.3
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCc-eeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCc---
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKR-GYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSN--- 292 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~r-g~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~--- 292 (473)
.|+|+++..+.+.+.+.....+-. . ...|. .+||+||||||||.+|+++|..+ ...++.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~---~--~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLE---D--PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCC---C--CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 577888888887777654432110 0 01133 48999999999999999999998 457788887765221
Q ss_pred ----------------hHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc--c
Q 012016 293 ----------------SDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW--S 354 (473)
Q Consensus 293 ----------------~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~--~ 354 (473)
..|.+.+.. ...+||+|||||.+ .....+.|+..+|.-. .
T Consensus 642 ~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka---------------------~~~v~~~Llq~ld~g~l~d 699 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKA---------------------HPDVLELFYQVFDKGVMED 699 (852)
T ss_pred ccccCCCCCcccccccchHHHHHHh-CCCcEEEEechhhc---------------------CHHHHHHHHHHhhcceeec
Confidence 123333332 45699999999865 2345666777776321 1
Q ss_pred CCC-----CceEEEEecCCCC-----------------------------CCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 012016 355 SCG-----DERIIVFTTNHKE-----------------------------KLDPALLRPGRMDVHVHMSYCTPSGFKLLA 400 (473)
Q Consensus 355 ~~~-----~~~iiI~tTN~~~-----------------------------~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~ 400 (473)
..| .+.+||+|||... .+.|+|+. |++ .|.|...+.+....|+
T Consensus 700 ~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv 776 (852)
T TIGR03345 700 GEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIV 776 (852)
T ss_pred CCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHH
Confidence 111 3579999999521 14566777 998 7899999999999999
Q ss_pred HHHhC
Q 012016 401 ANYLG 405 (473)
Q Consensus 401 ~~~l~ 405 (473)
...+.
T Consensus 777 ~~~L~ 781 (852)
T TIGR03345 777 RLKLD 781 (852)
T ss_pred HHHHH
Confidence 88775
No 160
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=7.5e-10 Score=112.07 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=94.6
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhcCC-------------------------ceEEcccc------------------
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNF-------------------------DVYDLELT------------------ 287 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l~~-------------------------~~~~l~~~------------------ 287 (473)
..+.+|||+||+|+||+++|.++|+.+.. +++.+...
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 44679999999999999999999998832 12222211
Q ss_pred -----------cccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhc
Q 012016 288 -----------ELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFID 350 (473)
Q Consensus 288 -----------~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ld 350 (473)
....-+.++++..... ..-|++||++|.+ +....+.||+.++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m---------------------~~~AaNaLLKtLE 157 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL---------------------NVAAANALLKTLE 157 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc---------------------CHHHHHHHHHHhc
Confidence 0112345666655543 3469999999987 3567789999998
Q ss_pred ccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012016 351 GLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANY 403 (473)
Q Consensus 351 g~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~ 403 (473)
. +++++++|++|++++.|.|++++ |+ ..|.|+.|+.++..+.+...
T Consensus 158 E----Pp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 158 E----PPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred C----CCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 5 45679999999999999999998 88 68999999999888776653
No 161
>PRK08116 hypothetical protein; Validated
Probab=99.21 E-value=1.1e-10 Score=114.76 Aligned_cols=149 Identities=23% Similarity=0.354 Sum_probs=91.0
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccC-
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRS- 291 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~- 291 (473)
.+|+++...++. ..+...+..+... +... .....|++|+||||||||+|+.|+|+++ +.+++.++..++..
T Consensus 82 ~tFdnf~~~~~~-~~a~~~a~~y~~~---~~~~-~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 82 STFENFLFDKGS-EKAYKIARKYVKK---FEEM-KKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred cchhcccCChHH-HHHHHHHHHHHHH---HHhh-ccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 467777644433 3334444444432 1111 1224689999999999999999999987 78888888765421
Q ss_pred ---------chHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEE
Q 012016 292 ---------NSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERII 362 (473)
Q Consensus 292 ---------~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ii 362 (473)
.....+++....+..+|+|||+...- ........|.+.+|.... .+..+
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~-------------------~t~~~~~~l~~iin~r~~---~~~~~ 214 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLVNADLLILDDLGAER-------------------DTEWAREKVYNIIDSRYR---KGLPT 214 (268)
T ss_pred HHHHHhccccccHHHHHHHhcCCCEEEEecccCCC-------------------CCHHHHHHHHHHHHHHHH---CCCCE
Confidence 11223455556677899999996421 112334455666665432 23568
Q ss_pred EEecCCC-CC----CCccccCCCce---eeEEEeCCCCH
Q 012016 363 VFTTNHK-EK----LDPALLRPGRM---DVHVHMSYCTP 393 (473)
Q Consensus 363 I~tTN~~-~~----ld~aLlrpgRf---d~~I~~~~p~~ 393 (473)
|+|||.+ +. +++.+.. |+ ...|.|+-++.
T Consensus 215 IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 215 IVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred EEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 8888875 33 5666766 64 44567766664
No 162
>PRK08181 transposase; Validated
Probab=99.19 E-value=1.1e-10 Score=114.52 Aligned_cols=64 Identities=30% Similarity=0.485 Sum_probs=51.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccC-------chHHHHHHHHhccCceEEEeccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRS-------NSDLRTLLVATANRSILVVEDIDCT 316 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~-------~~~l~~l~~~~~~~sIL~iDdiD~l 316 (473)
..+++|+||||||||+|+.|+|+++ |+.++.++..++.. +..+.+.+....+..+|+|||++..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccc
Confidence 4689999999999999999999866 77888877766521 2345566677778899999999876
No 163
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.18 E-value=8.3e-11 Score=117.70 Aligned_cols=96 Identities=24% Similarity=0.388 Sum_probs=70.0
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc--
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR-- 290 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~-- 290 (473)
.+|+++...+..+..+......|+... .. .+..+|++|+||+|||||+|+.|||+++ |.++..+...++.
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~---~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAY---PP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHh---hc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 678888766555556666666666532 11 1245799999999999999999999998 7777777665541
Q ss_pred -----CchHHHHHHHHhccCceEEEeccccc
Q 012016 291 -----SNSDLRTLLVATANRSILVVEDIDCT 316 (473)
Q Consensus 291 -----~~~~l~~l~~~~~~~sIL~iDdiD~l 316 (473)
.+..+.+.+....+..+|+|||+..-
T Consensus 199 lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 199 LKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 22345666777788999999999754
No 164
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.18 E-value=4.1e-10 Score=127.16 Aligned_cols=159 Identities=19% Similarity=0.288 Sum_probs=105.9
Q ss_pred cccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCch--
Q 012016 219 ETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNS-- 293 (473)
Q Consensus 219 ~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~-- 293 (473)
+.|+|+++..+.|...+.....+- .. ...|...+||+||+|||||+||++||+.+ +.+++.+++++.....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl---~~-~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL---KN-PNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc---cC-CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 357787777777766554322110 00 01122358999999999999999999988 4678888877653211
Q ss_pred -----------------HHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc--c
Q 012016 294 -----------------DLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW--S 354 (473)
Q Consensus 294 -----------------~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~--~ 354 (473)
.|.+.+. ....+||+|||+|.+ .....+.|+..+|.-. .
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~-~~p~~VvllDeieka---------------------~~~v~~~Llq~le~g~~~d 642 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVR-KKPYTVVLFDEIEKA---------------------HPDIFNLLLQILDDGRLTD 642 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHH-hCCCeEEEECChhhC---------------------CHHHHHHHHHHhccCceec
Confidence 1222222 123489999999976 2456777888887421 1
Q ss_pred CC-----CCceEEEEecCCCCC-------------------------------------CCccccCCCceeeEEEeCCCC
Q 012016 355 SC-----GDERIIVFTTNHKEK-------------------------------------LDPALLRPGRMDVHVHMSYCT 392 (473)
Q Consensus 355 ~~-----~~~~iiI~tTN~~~~-------------------------------------ld~aLlrpgRfd~~I~~~~p~ 392 (473)
.. -.+.+||+|||.... +.|.|+. |+|.+|.|...+
T Consensus 643 ~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~ 720 (821)
T CHL00095 643 SKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLT 720 (821)
T ss_pred CCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCC
Confidence 11 145899999995311 2245566 999999999999
Q ss_pred HHHHHHHHHHHhC
Q 012016 393 PSGFKLLAANYLG 405 (473)
Q Consensus 393 ~~~r~~l~~~~l~ 405 (473)
.++..+|+...+.
T Consensus 721 ~~~l~~Iv~~~l~ 733 (821)
T CHL00095 721 KNDVWEIAEIMLK 733 (821)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988775
No 165
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.5e-10 Score=122.55 Aligned_cols=159 Identities=18% Similarity=0.293 Sum_probs=114.1
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC---CceEEcccccccCchHHH
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELTELRSNSDLR 296 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~---~~~~~l~~~~~~~~~~l~ 296 (473)
.|+|+++....+.+.+..-..+ ... ...|-..+||.||.|+|||.||+++|..|. -.++.+|+++......+.
T Consensus 492 rViGQd~AV~avs~aIrraRaG---L~d-p~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAG---LGD-PNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcC---CCC-CCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 4778777777766655533221 000 012234689999999999999999999996 889999999986655555
Q ss_pred HHHHHhc------------------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc--ccCC
Q 012016 297 TLLVATA------------------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL--WSSC 356 (473)
Q Consensus 297 ~l~~~~~------------------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~--~~~~ 356 (473)
+++-.-+ ..|||++|||+.. ....++-||+.||.- ....
T Consensus 568 rLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA---------------------HpdV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 568 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA---------------------HPDVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc---------------------CHHHHHHHHHHhcCCeeecCC
Confidence 5543221 2489999999864 456888899999742 2222
Q ss_pred C-----CceEEEEecCCC----------------------------CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012016 357 G-----DERIIVFTTNHK----------------------------EKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANY 403 (473)
Q Consensus 357 ~-----~~~iiI~tTN~~----------------------------~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~ 403 (473)
| .+.|||+|||-- ..+.|+++. |+|..|.|...+.+...+|+...
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHH
Confidence 2 257899999942 013456666 99999999999999999999988
Q ss_pred hC
Q 012016 404 LG 405 (473)
Q Consensus 404 l~ 405 (473)
+.
T Consensus 705 L~ 706 (786)
T COG0542 705 LN 706 (786)
T ss_pred HH
Confidence 75
No 166
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.14 E-value=8.6e-10 Score=100.42 Aligned_cols=112 Identities=17% Similarity=0.300 Sum_probs=81.6
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc-----------------------CCceEEcccccc---cCchHHHHHHHHhc--
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL-----------------------NFDVYDLELTEL---RSNSDLRTLLVATA-- 303 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l-----------------------~~~~~~l~~~~~---~~~~~l~~l~~~~~-- 303 (473)
.+..|||+||+|+||+++|.++|+.+ ..+++.++.... ...+.++++.....
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~ 97 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLS 97 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHH
Confidence 46789999999999999999999987 134455544432 24467777766553
Q ss_pred ----cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCC
Q 012016 304 ----NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRP 379 (473)
Q Consensus 304 ----~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrp 379 (473)
..-|++|||+|.+ .....+.||..|+.. +...++|++|+.++.|.|.++.
T Consensus 98 ~~~~~~KviiI~~ad~l---------------------~~~a~NaLLK~LEep----p~~~~fiL~t~~~~~il~TI~S- 151 (162)
T PF13177_consen 98 PSEGKYKVIIIDEADKL---------------------TEEAQNALLKTLEEP----PENTYFILITNNPSKILPTIRS- 151 (162)
T ss_dssp -TTSSSEEEEEETGGGS----------------------HHHHHHHHHHHHST----TTTEEEEEEES-GGGS-HHHHT-
T ss_pred HhcCCceEEEeehHhhh---------------------hHHHHHHHHHHhcCC----CCCEEEEEEECChHHChHHHHh-
Confidence 3579999999987 356789999999854 4679999999999999999998
Q ss_pred CceeeEEEeCCC
Q 012016 380 GRMDVHVHMSYC 391 (473)
Q Consensus 380 gRfd~~I~~~~p 391 (473)
|+ ..|.|+..
T Consensus 152 -Rc-~~i~~~~l 161 (162)
T PF13177_consen 152 -RC-QVIRFRPL 161 (162)
T ss_dssp -TS-EEEEE---
T ss_pred -hc-eEEecCCC
Confidence 87 46777653
No 167
>PRK12377 putative replication protein; Provisional
Probab=99.13 E-value=4.3e-10 Score=109.11 Aligned_cols=94 Identities=19% Similarity=0.329 Sum_probs=64.3
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccC-
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRS- 291 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~- 291 (473)
.+|+++....+..+.++..+..+...- .. ...+++|+||||||||+|+.|||+++ +..++.++..++..
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~---~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADEL---MT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHH---Hh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 578887654433434445454444321 11 13589999999999999999999998 67777777666521
Q ss_pred -------chHHHHHHHHhccCceEEEeccccc
Q 012016 292 -------NSDLRTLLVATANRSILVVEDIDCT 316 (473)
Q Consensus 292 -------~~~l~~l~~~~~~~sIL~iDdiD~l 316 (473)
.....+++....+..+|+|||++..
T Consensus 144 l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 144 LHESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 1123456667778899999999764
No 168
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.12 E-value=6.6e-10 Score=111.82 Aligned_cols=117 Identities=21% Similarity=0.336 Sum_probs=89.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC------------------------CceEEcccccccC----chHHHHHHHHhc-
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN------------------------FDVYDLELTELRS----NSDLRTLLVATA- 303 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~------------------------~~~~~l~~~~~~~----~~~l~~l~~~~~- 303 (473)
+..+||+||||||||++|.++|+.+. .+++.++.++... .+.++++.....
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSE 103 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhcc
Confidence 34799999999999999999999986 5888888888754 234555544432
Q ss_pred -----cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccC
Q 012016 304 -----NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLR 378 (473)
Q Consensus 304 -----~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlr 378 (473)
..-|++|||+|.+. ....+.|+..++.. +.+..+|++||.+..+-|.+..
T Consensus 104 ~~~~~~~kviiidead~mt---------------------~~A~nallk~lEep----~~~~~~il~~n~~~~il~tI~S 158 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLT---------------------EDAANALLKTLEEP----PKNTRFILITNDPSKILPTIRS 158 (325)
T ss_pred CCCCCCceEEEeCcHHHHh---------------------HHHHHHHHHHhccC----CCCeEEEEEcCChhhccchhhh
Confidence 35799999999883 35667788877743 4568899999999999998887
Q ss_pred CCceeeEEEeCCCCHHHHH
Q 012016 379 PGRMDVHVHMSYCTPSGFK 397 (473)
Q Consensus 379 pgRfd~~I~~~~p~~~~r~ 397 (473)
|+ ..+.|+.|+...+.
T Consensus 159 --Rc-~~i~f~~~~~~~~i 174 (325)
T COG0470 159 --RC-QRIRFKPPSRLEAI 174 (325)
T ss_pred --cc-eeeecCCchHHHHH
Confidence 77 47888876655543
No 169
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.12 E-value=1.6e-10 Score=106.14 Aligned_cols=108 Identities=24% Similarity=0.417 Sum_probs=76.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCC----ceEEcccccccC----chHHHHHHHHhc------cCceEEEeccccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNF----DVYDLELTELRS----NSDLRTLLVATA------NRSILVVEDIDCTID 318 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~----~~~~l~~~~~~~----~~~l~~l~~~~~------~~sIL~iDdiD~l~~ 318 (473)
...+||.||+|||||.|++++|..+.. +++.+|++.+.. ...+..++.... ...||+|||||.+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 457999999999999999999999996 999999999876 444555554432 457999999999854
Q ss_pred cccCCccccCCCCCCCccchhHHHHHHHHHhccccc--CCC-----CceEEEEecCCCC
Q 012016 319 LQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWS--SCG-----DERIIVFTTNHKE 370 (473)
Q Consensus 319 ~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~--~~~-----~~~iiI~tTN~~~ 370 (473)
. ...+.+.......+.||..||+-.- ..+ .+.+||+|+|--.
T Consensus 83 ~----------~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 83 S----------NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp T----------TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred c----------ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 1 0012223344667888888875321 112 3579999999743
No 170
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=4.4e-09 Score=105.80 Aligned_cols=124 Identities=13% Similarity=0.128 Sum_probs=95.0
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcC------------------------CceEEccc--ccccCchHHHHHHHHhc--
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLN------------------------FDVYDLEL--TELRSNSDLRTLLVATA-- 303 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~------------------------~~~~~l~~--~~~~~~~~l~~l~~~~~-- 303 (473)
.+.+|||+||+|+||+++|.++|+.+- -+++.+.. +...+.+.+|++.....
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 367999999999999999999999872 23444432 11224456776655442
Q ss_pred ----cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCC
Q 012016 304 ----NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRP 379 (473)
Q Consensus 304 ----~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrp 379 (473)
..-|++||++|.+ +....+.||+.++. +++..++|++|+.++.|.|++++
T Consensus 103 ~~~g~~KV~iI~~a~~m---------------------~~~AaNaLLKtLEE----Pp~~~~fiL~t~~~~~llpTI~S- 156 (325)
T PRK06871 103 AQQGGNKVVYIQGAERL---------------------TEAAANALLKTLEE----PRPNTYFLLQADLSAALLPTIYS- 156 (325)
T ss_pred cccCCceEEEEechhhh---------------------CHHHHHHHHHHhcC----CCCCeEEEEEECChHhCchHHHh-
Confidence 3469999999987 35678899999985 45679999999999999999998
Q ss_pred CceeeEEEeCCCCHHHHHHHHHHH
Q 012016 380 GRMDVHVHMSYCTPSGFKLLAANY 403 (473)
Q Consensus 380 gRfd~~I~~~~p~~~~r~~l~~~~ 403 (473)
|+ .++.|+.|+.++..+.+...
T Consensus 157 -RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 157 -RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred -hc-eEEeCCCCCHHHHHHHHHHH
Confidence 87 57899999999877666543
No 171
>PRK06526 transposase; Provisional
Probab=99.10 E-value=1.1e-10 Score=113.72 Aligned_cols=64 Identities=23% Similarity=0.386 Sum_probs=48.9
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc-------CchHHHHHHHHhccCceEEEeccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR-------SNSDLRTLLVATANRSILVVEDIDCT 316 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~-------~~~~l~~l~~~~~~~sIL~iDdiD~l 316 (473)
+.+++|+||||||||+|+.+|+.++ |+.++.....++. ....+...+.......+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 4589999999999999999999986 7777776665441 12234455556667899999999876
No 172
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=2.9e-09 Score=107.88 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=95.5
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcC------------------------CceEEcccc---cccCchHHHHHHHHhc-
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLN------------------------FDVYDLELT---ELRSNSDLRTLLVATA- 303 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~------------------------~~~~~l~~~---~~~~~~~l~~l~~~~~- 303 (473)
.+.+|||+||+|+||+++|.++|..+- -+++.+... ...+-+.+|++.....
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 467999999999999999999999882 234444322 1234456777665543
Q ss_pred -----cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccC
Q 012016 304 -----NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLR 378 (473)
Q Consensus 304 -----~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlr 378 (473)
..-|++||++|.+ +....+.||+.|+. ++++.++|++|++++.|.|.+++
T Consensus 103 ~~~~g~~kV~iI~~ae~m---------------------~~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 103 HARLGGAKVVWLPDAALL---------------------TDAAANALLKTLEE----PPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred ccccCCceEEEEcchHhh---------------------CHHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHh
Confidence 4579999999988 35678899999985 45679999999999999999998
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHH
Q 012016 379 PGRMDVHVHMSYCTPSGFKLLAAN 402 (473)
Q Consensus 379 pgRfd~~I~~~~p~~~~r~~l~~~ 402 (473)
|+. .+.|+.|+.++....+..
T Consensus 158 --RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 158 --RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred --ccc-cccCCCCCHHHHHHHHHH
Confidence 885 689999999887766643
No 173
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=1.3e-09 Score=118.26 Aligned_cols=202 Identities=22% Similarity=0.287 Sum_probs=119.5
Q ss_pred cceeccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEE-c
Q 012016 206 AWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD-L 284 (473)
Q Consensus 206 ~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~-l 284 (473)
.|. ....|.++++|+++++..+++...+.... .+..+.+.++|+||||||||++++++|+.++..++. .
T Consensus 73 pW~--eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 73 PWV--EKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred chH--HHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 463 36778999999999988777655444221 122334569999999999999999999999876544 1
Q ss_pred ccc---c------------------ccCchHHHHHHHHh------------ccCceEEEeccccccccccCCccccCCCC
Q 012016 285 ELT---E------------------LRSNSDLRTLLVAT------------ANRSILVVEDIDCTIDLQDRLPADIAGEG 331 (473)
Q Consensus 285 ~~~---~------------------~~~~~~l~~l~~~~------------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~ 331 (473)
+.. . ......+..++..+ .++.||||||++.++.
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~------------- 209 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY------------- 209 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch-------------
Confidence 111 0 01123344444432 2457999999998753
Q ss_pred CCCccchhHHHHHHHH--HhcccccCCCCceEEEE-ecCCCC--------------CCCccccCCCceeeEEEeCCCCHH
Q 012016 332 EGPIQQNKVTLSGFLN--FIDGLWSSCGDERIIVF-TTNHKE--------------KLDPALLRPGRMDVHVHMSYCTPS 394 (473)
Q Consensus 332 ~~~~~~~~~~ls~LL~--~ldg~~~~~~~~~iiI~-tTN~~~--------------~ld~aLlrpgRfd~~I~~~~p~~~ 394 (473)
. ....+..+|. ..+ . + ...+|+ +|..+. .|.++++.--|+ .+|.|+..+..
T Consensus 210 ----r-~~~~lq~lLr~~~~e----~-~-~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t 277 (637)
T TIGR00602 210 ----R-DTRALHEILRWKYVS----I-G-RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPT 277 (637)
T ss_pred ----h-hHHHHHHHHHHHhhc----C-C-CceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHH
Confidence 1 1223444444 222 1 1 233333 332221 133677732245 37999999999
Q ss_pred HHHHHHHHHhCccccCCHHHHHHHHhcCCC-CHHHHHHHH-hcCCCHHHHHHHHHHH
Q 012016 395 GFKLLAANYLGIKEHILFEEIEELISTTQV-TPAEVAEQL-MRNDDPELVLNGLIEF 449 (473)
Q Consensus 395 ~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~-t~a~i~~~l-~~~~~~~~al~~l~~~ 449 (473)
+.++.+.+.+..+...... ...+ ++..+..++ ...||...|+..|.-+
T Consensus 278 ~l~K~L~rIl~~E~~~~~~-------~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 278 IMKKFLNRIVTIEAKKNGE-------KIKVPKKTSVELLCQGCSGDIRSAINSLQFS 327 (637)
T ss_pred HHHHHHHHHHHhhhhcccc-------ccccCCHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 9888888777644211111 1112 233333333 3568999999888765
No 174
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.07 E-value=8.6e-10 Score=103.21 Aligned_cols=187 Identities=18% Similarity=0.258 Sum_probs=110.8
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-C----CceEEc
Q 012016 210 VNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-N----FDVYDL 284 (473)
Q Consensus 210 ~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-~----~~~~~l 284 (473)
++...|..+.+++|.++..+.+ .-+.+. |- -.+++|.||||||||+-+.++|++| | --+..+
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl----~via~~-------gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERL----SVIAKE-------GN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHH----HHHHHc-------CC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 4567889999999998776654 223322 21 2379999999999999999999998 3 346677
Q ss_pred ccccccCchHHHHHHHHhc---------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccC
Q 012016 285 ELTELRSNSDLRTLLVATA---------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSS 355 (473)
Q Consensus 285 ~~~~~~~~~~l~~l~~~~~---------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~ 355 (473)
+.++-.+-.-++.-+..-. +..|+++||.|.+.. +. ++.+ -..|+-..+
T Consensus 85 NASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~--------------gA----QQAl---RRtMEiyS~- 142 (333)
T KOG0991|consen 85 NASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA--------------GA----QQAL---RRTMEIYSN- 142 (333)
T ss_pred cCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh--------------HH----HHHH---HHHHHHHcc-
Confidence 8777666555555443322 347999999998853 21 2222 222332222
Q ss_pred CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcCCCCHHHHHHHHhc
Q 012016 356 CGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTTQVTPAEVAEQLMR 435 (473)
Q Consensus 356 ~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~t~a~i~~~l~~ 435 (473)
..-+.+++|..+++=+.+-. |+. .+.++..+..+...-+..... .+...+|+.-+...+..
T Consensus 143 ---ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k-------------~Ekv~yt~dgLeaiift 203 (333)
T KOG0991|consen 143 ---TTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAK-------------AEKVNYTDDGLEAIIFT 203 (333)
T ss_pred ---cchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHH-------------HhCCCCCcchHHHhhhh
Confidence 23466778877776555555 553 455666666654322222221 12334454444333332
Q ss_pred -CCCHHHHHHHHHHHH
Q 012016 436 -NDDPELVLNGLIEFL 450 (473)
Q Consensus 436 -~~~~~~al~~l~~~l 450 (473)
.+|...|++.|..-.
T Consensus 204 a~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTV 219 (333)
T ss_pred ccchHHHHHHHHHHHh
Confidence 356666666655443
No 175
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.06 E-value=7.3e-10 Score=121.58 Aligned_cols=152 Identities=21% Similarity=0.235 Sum_probs=102.8
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-------------------
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------------------- 277 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l------------------- 277 (473)
.|..|+|++..+..+.-.+... -..||||.||||||||+++++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4789999988887664333211 12479999999999999999999988
Q ss_pred ----------------CCceEEcccccc----cCchHHHHHHH-----------HhccCceEEEeccccccccccCCccc
Q 012016 278 ----------------NFDVYDLELTEL----RSNSDLRTLLV-----------ATANRSILVVEDIDCTIDLQDRLPAD 326 (473)
Q Consensus 278 ----------------~~~~~~l~~~~~----~~~~~l~~l~~-----------~~~~~sIL~iDdiD~l~~~~~r~~~~ 326 (473)
..+++.+.++.. .+.-++...+. ......|||||||+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------- 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------- 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------
Confidence 245666554422 12222333221 11255799999999873
Q ss_pred cCCCCCCCccchhHHHHHHHHHhccc---------ccCCCCceEEEEecCCC-CCCCccccCCCceeeEEEeCCCC-HHH
Q 012016 327 IAGEGEGPIQQNKVTLSGFLNFIDGL---------WSSCGDERIIVFTTNHK-EKLDPALLRPGRMDVHVHMSYCT-PSG 395 (473)
Q Consensus 327 ~~~~~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~iiI~tTN~~-~~ld~aLlrpgRfd~~I~~~~p~-~~~ 395 (473)
....+.|++.|+.- ........++|+|+|.. ..|.++|+. ||+.+|.++++. .++
T Consensus 140 ------------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~ 205 (633)
T TIGR02442 140 ------------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEE 205 (633)
T ss_pred ------------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHH
Confidence 45677788887521 11112347888888864 468899999 999999999985 566
Q ss_pred HHHHHHHHh
Q 012016 396 FKLLAANYL 404 (473)
Q Consensus 396 r~~l~~~~l 404 (473)
+.+++.+.+
T Consensus 206 ~~~il~~~~ 214 (633)
T TIGR02442 206 RVEIIRRRL 214 (633)
T ss_pred HHHHHHHHH
Confidence 777776544
No 176
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.06 E-value=1.1e-09 Score=94.74 Aligned_cols=118 Identities=24% Similarity=0.354 Sum_probs=71.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCc---eEEcccccccC--------------------chHHHHHHHHhc--cCce
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELTELRS--------------------NSDLRTLLVATA--NRSI 307 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~---~~~l~~~~~~~--------------------~~~l~~l~~~~~--~~sI 307 (473)
+..++|+||||||||++++++|..+... ++.+++..... .......+..+. .+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 88888775421 123333333333 2499
Q ss_pred EEEeccccccccccCCccccCCCCCCCccchhHHHHHH--HHHhcccccCCCCceEEEEecCCC-CCCCccccCCCceee
Q 012016 308 LVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGF--LNFIDGLWSSCGDERIIVFTTNHK-EKLDPALLRPGRMDV 384 (473)
Q Consensus 308 L~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~L--L~~ldg~~~~~~~~~iiI~tTN~~-~~ld~aLlrpgRfd~ 384 (473)
|+|||++.+... . ........ ....... .......+|+++|.. ...+..+.+ |++.
T Consensus 82 iiiDei~~~~~~----------------~-~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~ 140 (148)
T smart00382 82 LILDEITSLLDA----------------E-QEALLLLLEELRLLLLL--KSEKNLTVILTTNDEKDLGPALLRR--RFDR 140 (148)
T ss_pred EEEECCcccCCH----------------H-HHHHHHhhhhhHHHHHH--HhcCCCEEEEEeCCCccCchhhhhh--ccce
Confidence 999999987531 0 01100000 0000000 112347888888863 333444444 8888
Q ss_pred EEEeCCC
Q 012016 385 HVHMSYC 391 (473)
Q Consensus 385 ~I~~~~p 391 (473)
++.++.+
T Consensus 141 ~~~~~~~ 147 (148)
T smart00382 141 RIVLLLI 147 (148)
T ss_pred EEEecCC
Confidence 8887665
No 177
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.06 E-value=8.7e-10 Score=115.02 Aligned_cols=128 Identities=18% Similarity=0.238 Sum_probs=81.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCC--ceEEcccc-----cccCchHHHHH-----HHH-----hccCceEEEecccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELT-----ELRSNSDLRTL-----LVA-----TANRSILVVEDIDC 315 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~--~~~~l~~~-----~~~~~~~l~~l-----~~~-----~~~~sIL~iDdiD~ 315 (473)
..++||+||||||||++|++++...+. ++..+.+. ++.+...+... |.. .....+||+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 457999999999999999999998743 33322221 22111111111 111 11234899999975
Q ss_pred ccccccCCccccCCCCCCCccchhHHHHHHHHHhc-ccccCCC-----CceEEEEecCCCC---CCCccccCCCceeeEE
Q 012016 316 TIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFID-GLWSSCG-----DERIIVFTTNHKE---KLDPALLRPGRMDVHV 386 (473)
Q Consensus 316 l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ld-g~~~~~~-----~~~iiI~tTN~~~---~ld~aLlrpgRfd~~I 386 (473)
+ +..+.+.||..|. +.....+ +.+++|+|||... ...+|+.. ||-+.|
T Consensus 119 a---------------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri 175 (498)
T PRK13531 119 A---------------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRL 175 (498)
T ss_pred C---------------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEE
Confidence 5 4578888999983 3222111 2367777888532 23358999 999999
Q ss_pred EeCCCC-HHHHHHHHHHH
Q 012016 387 HMSYCT-PSGFKLLAANY 403 (473)
Q Consensus 387 ~~~~p~-~~~r~~l~~~~ 403 (473)
.+|+|+ .+++..|+...
T Consensus 176 ~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 176 WLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCCchHHHHHHHHcc
Confidence 999997 56667777653
No 178
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.06 E-value=1.7e-09 Score=112.02 Aligned_cols=115 Identities=17% Similarity=0.288 Sum_probs=70.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCc-----eEEcccc------cc------c------CchHHHHHHHHhc----cC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD-----VYDLELT------EL------R------SNSDLRTLLVATA----NR 305 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~-----~~~l~~~------~~------~------~~~~l~~l~~~~~----~~ 305 (473)
+++++|+||||||||++|+++|+.+... +..+... ++ . ....+.+++..+. .+
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 4689999999999999999999988421 1111111 10 0 0122333444432 57
Q ss_pred ceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc------------------ccCCCCceEEEEecC
Q 012016 306 SILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL------------------WSSCGDERIIVFTTN 367 (473)
Q Consensus 306 sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~------------------~~~~~~~~iiI~tTN 367 (473)
.+||||||+..-. ...+..++..|+.- .-.-+.++.||+|+|
T Consensus 274 ~vliIDEINRani--------------------~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMN 333 (459)
T PRK11331 274 YVFIIDEINRANL--------------------SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMN 333 (459)
T ss_pred cEEEEehhhccCH--------------------HHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecC
Confidence 9999999986521 11222222222200 002246789999999
Q ss_pred CCC----CCCccccCCCceeeEEEeCC
Q 012016 368 HKE----KLDPALLRPGRMDVHVHMSY 390 (473)
Q Consensus 368 ~~~----~ld~aLlrpgRfd~~I~~~~ 390 (473)
..+ .+|.||+| ||. .|++..
T Consensus 334 t~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 334 TADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccccchhhccHHHHh--hhh-eEEecC
Confidence 987 79999999 996 466654
No 179
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=6.7e-09 Score=104.24 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=94.9
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcC-----------------------CceEEcccc---cccCchHHHHHHHHhc--
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLN-----------------------FDVYDLELT---ELRSNSDLRTLLVATA-- 303 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~-----------------------~~~~~l~~~---~~~~~~~l~~l~~~~~-- 303 (473)
.+.+|||+||.|+||+++|.++|..+- -+++.+... ...+.+.++++.....
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 467899999999999999999999871 345555432 1234456666554432
Q ss_pred ----cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCC
Q 012016 304 ----NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRP 379 (473)
Q Consensus 304 ----~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrp 379 (473)
..-|++||++|.+ +....+.||+.++. ++++.++|++|+.++.|.|.+++
T Consensus 104 ~~~~~~kV~iI~~ae~m---------------------~~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTI~S- 157 (319)
T PRK06090 104 SQLNGYRLFVIEPADAM---------------------NESASNALLKTLEE----PAPNCLFLLVTHNQKRLLPTIVS- 157 (319)
T ss_pred cccCCceEEEecchhhh---------------------CHHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHh-
Confidence 3479999999987 35677899999985 45679999999999999999998
Q ss_pred CceeeEEEeCCCCHHHHHHHHHH
Q 012016 380 GRMDVHVHMSYCTPSGFKLLAAN 402 (473)
Q Consensus 380 gRfd~~I~~~~p~~~~r~~l~~~ 402 (473)
|+ ..+.|+.|+.++..+.+..
T Consensus 158 -RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 158 -RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -cc-eeEeCCCCCHHHHHHHHHH
Confidence 88 4789999999987766654
No 180
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.05 E-value=3.6e-09 Score=106.90 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=50.6
Q ss_pred CCcc-ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------ceEEccc
Q 012016 216 ATFE-TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-------DVYDLEL 286 (473)
Q Consensus 216 ~~f~-~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~-------~~~~l~~ 286 (473)
.-|+ ++.|.++.++++++.+.....+ +...++.++|+||||||||+|+++||+.++. ++|.+..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a~g-------~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAAQG-------LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 4567 8999999988888766654421 1223578999999999999999999999976 8888876
No 181
>PRK04132 replication factor C small subunit; Provisional
Probab=99.04 E-value=2.5e-09 Score=118.84 Aligned_cols=124 Identities=11% Similarity=0.123 Sum_probs=99.7
Q ss_pred eEEeC--CCCCCHHHHHHHHHHhc-----CCceEEcccccccCchHHHHHHHHhc--------cCceEEEeccccccccc
Q 012016 256 YLLYG--PPGTGKSSLIAAMANYL-----NFDVYDLELTELRSNSDLRTLLVATA--------NRSILVVEDIDCTIDLQ 320 (473)
Q Consensus 256 ~LL~G--PpGtGKT~la~alA~~l-----~~~~~~l~~~~~~~~~~l~~l~~~~~--------~~sIL~iDdiD~l~~~~ 320 (473)
.+..| |++.||||+|.|+|+++ +.+++.+|+++..+...+++++.... +..|++|||+|.+.
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt--- 643 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT--- 643 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC---
Confidence 46679 99999999999999998 67899999998767778887775432 12599999999883
Q ss_pred cCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 012016 321 DRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLA 400 (473)
Q Consensus 321 ~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~ 400 (473)
....+.|+..|+.. +....+|++||.++.+.++|++ |+ ..+.|+.|+.++....+
T Consensus 644 ------------------~~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 644 ------------------QDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred ------------------HHHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHH
Confidence 34567788888853 3458899999999999999998 87 68999999998887777
Q ss_pred HHHhCcc
Q 012016 401 ANYLGIK 407 (473)
Q Consensus 401 ~~~l~~~ 407 (473)
......+
T Consensus 699 ~~I~~~E 705 (846)
T PRK04132 699 RYIAENE 705 (846)
T ss_pred HHHHHhc
Confidence 7665443
No 182
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.04 E-value=1.5e-09 Score=116.32 Aligned_cols=128 Identities=17% Similarity=0.208 Sum_probs=85.9
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEc----ccccccC---------chHHHHHHHHhccCceEEEecccccccccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL----ELTELRS---------NSDLRTLLVATANRSILVVEDIDCTIDLQD 321 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l----~~~~~~~---------~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~ 321 (473)
++||+|+||||||.+++++++......+.. ++..+.. ...++.-.....++.+++|||+|.+-
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~---- 313 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMD---- 313 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCC----
Confidence 599999999999999999999886544432 2111210 00011101112467899999999873
Q ss_pred CCccccCCCCCCCccchhHHHHHHHHHhccc---------ccCCCCceEEEEecCCCC-------------CCCccccCC
Q 012016 322 RLPADIAGEGEGPIQQNKVTLSGFLNFIDGL---------WSSCGDERIIVFTTNHKE-------------KLDPALLRP 379 (473)
Q Consensus 322 r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~iiI~tTN~~~-------------~ld~aLlrp 379 (473)
....+.|+..|+.- ...-.....||+|+|..+ .|++++++
T Consensus 314 -----------------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs- 375 (509)
T smart00350 314 -----------------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS- 375 (509)
T ss_pred -----------------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC-
Confidence 34456666666432 111224567889999763 58999999
Q ss_pred CceeeEE-EeCCCCHHHHHHHHHHHhC
Q 012016 380 GRMDVHV-HMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 380 gRfd~~I-~~~~p~~~~r~~l~~~~l~ 405 (473)
|||... -+++|+.+....|+.+.+.
T Consensus 376 -RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 376 -RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred -ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999754 4578999999999988654
No 183
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.04 E-value=3.6e-09 Score=108.52 Aligned_cols=177 Identities=16% Similarity=0.256 Sum_probs=107.8
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEcc
Q 012016 211 NLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLE 285 (473)
Q Consensus 211 ~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~ 285 (473)
.+.+.-+|++++..+.-+.. ......+-..+ |. ...-++||||.|.|||+|++|++++. +..+++++
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A-~aa~~~va~~~------g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLA-YAAAKAVAENP------GG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred cCCCCCchhheeeCCchHHH-HHHHHHHHhcc------CC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 35556799998765543322 22222222211 22 24469999999999999999999988 34466666
Q ss_pred cccccC-------chHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCC
Q 012016 286 LTELRS-------NSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGD 358 (473)
Q Consensus 286 ~~~~~~-------~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 358 (473)
...... +..+.+.-... +-.+|+||||+.+.. . ..+...|.+.+..+... +
T Consensus 151 se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~g----------------k---~~~qeefFh~FN~l~~~--~ 208 (408)
T COG0593 151 SEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAG----------------K---ERTQEEFFHTFNALLEN--G 208 (408)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcC----------------C---hhHHHHHHHHHHHHHhc--C
Confidence 544310 11111222222 567999999999853 1 12233344433333333 2
Q ss_pred ceEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHH
Q 012016 359 ERIIVFTTNHKEK---LDPALLRPGRMD--VHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELI 419 (473)
Q Consensus 359 ~~iiI~tTN~~~~---ld~aLlrpgRfd--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~ 419 (473)
+.||+.+...|.. +.|.|.+ ||. ..+.+..|+.+.|..++.......+..+.+++...+
T Consensus 209 kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~l 272 (408)
T COG0593 209 KQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFL 272 (408)
T ss_pred CEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3555555555654 4588887 875 677899999999999999877666655655555544
No 184
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1e-08 Score=102.95 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=91.2
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcC---------------------CceEEcc--cccc-------cCchHHHHHHHH
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLN---------------------FDVYDLE--LTEL-------RSNSDLRTLLVA 301 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~---------------------~~~~~l~--~~~~-------~~~~~l~~l~~~ 301 (473)
.+.+|||+||+|+||+++|.++|+.+- -+++.++ ...- ..-+.++++...
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 466899999999999999999998772 2334342 1110 123455655554
Q ss_pred hc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCcc
Q 012016 302 TA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPA 375 (473)
Q Consensus 302 ~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~a 375 (473)
.. ..-|++||++|.+ +....+.||+.|+. ++++.++|++|+.++.|.|.
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m---------------------~~~AaNaLLKtLEE----Pp~~~~fiL~~~~~~~lLpT 159 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAI---------------------NRAACNALLKTLEE----PSPGRYLWLISAQPARLPAT 159 (319)
T ss_pred HhhCcccCCcEEEEeccHhhh---------------------CHHHHHHHHHHhhC----CCCCCeEEEEECChhhCchH
Confidence 32 3469999999988 35677899999885 34568899999999999999
Q ss_pred ccCCCceeeEEEeCCCCHHHHHHHHHH
Q 012016 376 LLRPGRMDVHVHMSYCTPSGFKLLAAN 402 (473)
Q Consensus 376 LlrpgRfd~~I~~~~p~~~~r~~l~~~ 402 (473)
+++ |+ ..|.|+.|+.++....+..
T Consensus 160 IrS--RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 160 IRS--RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred HHh--hh-eEeeCCCcCHHHHHHHHHH
Confidence 998 88 4789999999887666553
No 185
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.03 E-value=1.5e-10 Score=99.72 Aligned_cols=106 Identities=26% Similarity=0.294 Sum_probs=61.4
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHH--HHH-------hc---cCceEEEeccccccccccC
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTL--LVA-------TA---NRSILVVEDIDCTIDLQDR 322 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l--~~~-------~~---~~sIL~iDdiD~l~~~~~r 322 (473)
++||.|+||+|||++++++|..++..+..+.++.-...+++.-. +.. .. -..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 48999999999999999999999999998887532111121100 000 01 1369999999765
Q ss_pred CccccCCCCCCCccchhHHHHHHHHHhcc-------cccCCCCceEEEEecCCCC-----CCCccccCCCcee
Q 012016 323 LPADIAGEGEGPIQQNKVTLSGFLNFIDG-------LWSSCGDERIIVFTTNHKE-----KLDPALLRPGRMD 383 (473)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-------~~~~~~~~~iiI~tTN~~~-----~ld~aLlrpgRfd 383 (473)
..++.+.||..|.. ..-..++..+||+|-|..+ .|+.|++. ||-
T Consensus 75 ---------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 75 ---------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp ----------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred ---------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 35678999988843 2223445678888999876 68888888 873
No 186
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.02 E-value=1.2e-09 Score=102.11 Aligned_cols=46 Identities=33% Similarity=0.553 Sum_probs=35.6
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.|.+|.|++..|..+.-... | ..++||+||||||||++|+++...|
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999988744332 2 3699999999999999999999987
No 187
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.98 E-value=2.1e-09 Score=108.51 Aligned_cols=103 Identities=22% Similarity=0.333 Sum_probs=67.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccC---------chHHHHHHHHhccCceEEEecccccccccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRS---------NSDLRTLLVATANRSILVVEDIDCTIDLQD 321 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~---------~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~ 321 (473)
.+++||||+|||||+|+.|||+++ |..++.++..++.. .......+....+..+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~--- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKI--- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCC---
Confidence 689999999999999999999997 78888887766521 112222345556779999999976521
Q ss_pred CCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCC-CC----CCccccC
Q 012016 322 RLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHK-EK----LDPALLR 378 (473)
Q Consensus 322 r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~-~~----ld~aLlr 378 (473)
.....+.|.+.++..... +.-+|+|||.+ +. +++.+..
T Consensus 261 ----------------t~~~~~~Lf~iin~R~~~---~k~tIiTSNl~~~el~~~~~eri~S 303 (329)
T PRK06835 261 ----------------TEFSKSELFNLINKRLLR---QKKMIISTNLSLEELLKTYSERISS 303 (329)
T ss_pred ----------------CHHHHHHHHHHHHHHHHC---CCCEEEECCCCHHHHHHHHhHHHHH
Confidence 123334555555543321 24577888864 22 4455554
No 188
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.96 E-value=4.4e-09 Score=102.63 Aligned_cols=93 Identities=26% Similarity=0.445 Sum_probs=65.7
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccC-
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRS- 291 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~- 291 (473)
..+.++-+.+...+.....+..+.. +|. -+.+++|+||||||||+|+.|||+++ |.+++.+...++..
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~---~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~ 147 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVE---FFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK 147 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHH---Hhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 3445566666666666666655542 333 25699999999999999999999998 78888888877621
Q ss_pred ------chHHH-HHHHHhccCceEEEeccccc
Q 012016 292 ------NSDLR-TLLVATANRSILVVEDIDCT 316 (473)
Q Consensus 292 ------~~~l~-~l~~~~~~~sIL~iDdiD~l 316 (473)
+.... ++.....+-.+|||||+...
T Consensus 148 Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 148 LKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 11222 23333678899999999765
No 189
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.94 E-value=1e-09 Score=101.48 Aligned_cols=64 Identities=31% Similarity=0.568 Sum_probs=49.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc-------CchHHHHHHHHhccCceEEEeccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR-------SNSDLRTLLVATANRSILVVEDIDCT 316 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~-------~~~~l~~l~~~~~~~sIL~iDdiD~l 316 (473)
+.|++|+||||||||+||.|||+++ |++++.++..++. ......+.+....+..+|||||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEeccccccee
Confidence 4699999999999999999999987 8888888877762 23345566777778899999999643
No 190
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.93 E-value=1e-08 Score=103.78 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=102.0
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCch
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNS 293 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~ 293 (473)
.+++++|.....+.+++.+...... ...|||+|++||||+++|++|.... +.|++.++|..+.. .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~-----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-N 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-H
Confidence 3678899888888888887766542 3479999999999999999998765 46999999998742 3
Q ss_pred HHHHHH------------------HHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc-c
Q 012016 294 DLRTLL------------------VATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW-S 354 (473)
Q Consensus 294 ~l~~l~------------------~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~ 354 (473)
.+...+ ....+++.|||||||.+. ......|++.++.-. .
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~---------------------~~~Q~~L~~~l~~~~~~ 130 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP---------------------MLVQEKLLRVIEYGELE 130 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCC---------------------HHHHHHHHHHHhcCcEE
Confidence 333322 123456889999999883 334555666664321 1
Q ss_pred CCC------CceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHHhC
Q 012016 355 SCG------DERIIVFTTNHK-------EKLDPALLRPGRM-DVHVHMSYCTP--SGFKLLAANYLG 405 (473)
Q Consensus 355 ~~~------~~~iiI~tTN~~-------~~ld~aLlrpgRf-d~~I~~~~p~~--~~r~~l~~~~l~ 405 (473)
..+ .++-||+||+.. ..+.+.|.. || ..+|++|.... +....|+.+|+.
T Consensus 131 ~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~ 195 (326)
T PRK11608 131 RVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAI 195 (326)
T ss_pred eCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHH
Confidence 111 135677777653 345566776 77 44666666433 335567776653
No 191
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.92 E-value=3e-08 Score=99.55 Aligned_cols=65 Identities=28% Similarity=0.427 Sum_probs=44.0
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC--CceEEcccccc
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLELTEL 289 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~--~~~~~l~~~~~ 289 (473)
..+.++|+.+.++..-- +...++. |+--.|++||.||||||||.||-+||++|| .||..++.+++
T Consensus 22 ~~~GlVGQ~~AReAagi-iv~mIk~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGI-IVDMIKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp EETTEES-HHHHHHHHH-HHHHHHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred ccccccChHHHHHHHHH-HHHHHhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 35789999988887643 3334432 233368999999999999999999999995 56666665554
No 192
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.91 E-value=9.7e-09 Score=111.67 Aligned_cols=128 Identities=21% Similarity=0.176 Sum_probs=90.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCC--ceEEcccccc----cCchHHHHHHH-----------HhccCceEEEeccccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELTEL----RSNSDLRTLLV-----------ATANRSILVVEDIDCT 316 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~--~~~~l~~~~~----~~~~~l~~l~~-----------~~~~~sIL~iDdiD~l 316 (473)
.++||.|+||||||+++++++..++. +++.+.+... .+.-.+...+. ...++++||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998864 5777765221 11111221111 1235679999999987
Q ss_pred cccccCCccccCCCCCCCccchhHHHHHHHHHhccc---------ccCCCCceEEEEecCCCC---CCCccccCCCceee
Q 012016 317 IDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL---------WSSCGDERIIVFTTNHKE---KLDPALLRPGRMDV 384 (473)
Q Consensus 317 ~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~iiI~tTN~~~---~ld~aLlrpgRfd~ 384 (473)
. ..+.+.|++.|+.- .........||+|+|..+ .|.++|+. ||+.
T Consensus 97 ~---------------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l 153 (589)
T TIGR02031 97 D---------------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLAL 153 (589)
T ss_pred C---------------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccC
Confidence 3 45677788888531 111123467888999765 78999999 9999
Q ss_pred EEEeCCC-CHHHHHHHHHHHh
Q 012016 385 HVHMSYC-TPSGFKLLAANYL 404 (473)
Q Consensus 385 ~I~~~~p-~~~~r~~l~~~~l 404 (473)
+|.+.++ ..++|.+|+++++
T Consensus 154 ~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 154 HVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred eeecCCCCCHHHHHHHHHHHH
Confidence 9998874 6666889988876
No 193
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=7.4e-09 Score=101.07 Aligned_cols=93 Identities=28% Similarity=0.357 Sum_probs=66.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC--------chHHHHHHHHh------ccCceEEEeccccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS--------NSDLRTLLVAT------ANRSILVVEDIDCTID 318 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~--------~~~l~~l~~~~------~~~sIL~iDdiD~l~~ 318 (473)
+.++||.||.|||||.||+.+|+.|+.||...|++.+.. ++-+.+++..+ +++.|++|||||.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 457999999999999999999999999999999988732 23455666554 3789999999999954
Q ss_pred cccCCccccCCCCCCCccchhHHHHHHHHHhccc
Q 012016 319 LQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL 352 (473)
Q Consensus 319 ~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 352 (473)
.. ...+. ..+-...-....||..|+|-
T Consensus 177 kS----eN~SI---TRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 177 KS----ENPSI---TRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cC----CCCCc---ccccCchHHHHHHHHHHcCc
Confidence 21 11110 00112234556788888875
No 194
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.90 E-value=8.9e-09 Score=104.36 Aligned_cols=149 Identities=18% Similarity=0.218 Sum_probs=93.5
Q ss_pred ccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCchHHHHH
Q 012016 222 AMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNSDLRTL 298 (473)
Q Consensus 222 ~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~~l 298 (473)
+|.....+.+++.+...... ...|||+|++||||+++|++|.... +.|++.++|..+.. ..+...
T Consensus 2 iG~S~~m~~~~~~~~~~a~~-----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPL-----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHH
Confidence 44555556666666554432 3579999999999999999998766 47999999997642 233322
Q ss_pred H------------------HHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc-c-----
Q 012016 299 L------------------VATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW-S----- 354 (473)
Q Consensus 299 ~------------------~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~----- 354 (473)
+ ....+++.|||||||.+. ......|+..++.-. .
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~---------------------~~~Q~~Ll~~l~~~~~~~~g~~ 128 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATAS---------------------LLVQEKLLRVIEYGEFERVGGS 128 (329)
T ss_pred HhccccccccCcccccCCchhhCCCCEEEeCChHhCC---------------------HHHHHHHHHHHHcCcEEecCCC
Confidence 2 123357899999999883 334555666664321 0
Q ss_pred -CCCCceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCC--HHHHHHHHHHHhC
Q 012016 355 -SCGDERIIVFTTNHK-------EKLDPALLRPGRMD-VHVHMSYCT--PSGFKLLAANYLG 405 (473)
Q Consensus 355 -~~~~~~iiI~tTN~~-------~~ld~aLlrpgRfd-~~I~~~~p~--~~~r~~l~~~~l~ 405 (473)
....++-||++||.. ..+.+.|.. |+. ..|++|... .+....|+..|+.
T Consensus 129 ~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 129 QTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred ceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 011235677777653 244566666 774 456666554 3445667776664
No 195
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.90 E-value=1.3e-08 Score=109.99 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=103.2
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCc
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSN 292 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~ 292 (473)
.+|+.++|.....+.+++.+...... ...+||+|++||||+++|++|.... +.|++.++|..+..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~- 260 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARS-----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE- 260 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-
Confidence 57899999999888888887766532 3479999999999999999999875 57999999998733
Q ss_pred hHHHHHH------------------HHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc-
Q 012016 293 SDLRTLL------------------VATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW- 353 (473)
Q Consensus 293 ~~l~~l~------------------~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~- 353 (473)
..+...+ ....+++.|||||||.+. ......|++.++.-.
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~---------------------~~~Q~~Ll~~l~~~~~ 319 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEIS---------------------PAFQAKLLRVLQEGEF 319 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCC---------------------HHHHHHHHHHHhcCcE
Confidence 3333222 112356899999999883 234456666664321
Q ss_pred cCCC------CceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCC--HHHHHHHHHHHhC
Q 012016 354 SSCG------DERIIVFTTNHK-------EKLDPALLRPGRMD-VHVHMSYCT--PSGFKLLAANYLG 405 (473)
Q Consensus 354 ~~~~------~~~iiI~tTN~~-------~~ld~aLlrpgRfd-~~I~~~~p~--~~~r~~l~~~~l~ 405 (473)
...+ .++-+|+||+.. ..+.+.|.. |+. ..|++|... .+....|+..|+.
T Consensus 320 ~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~ 385 (534)
T TIGR01817 320 ERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLE 385 (534)
T ss_pred EECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHH
Confidence 1111 135677777653 233344444 553 467777654 3556677777765
No 196
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.89 E-value=7.1e-09 Score=94.93 Aligned_cols=115 Identities=21% Similarity=0.213 Sum_probs=74.1
Q ss_pred cccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCchHHH-
Q 012016 221 LAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNSDLR- 296 (473)
Q Consensus 221 l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~- 296 (473)
|+|.....+++++.+...... +..|||+|++||||+.+|++|.+.. +.|++.++|+.+.. +.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~-~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE-ELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H-HHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC-----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc-chhhh
Confidence 355566666777766655432 4579999999999999999999976 47999999998743 2333
Q ss_pred HHHH-----------------HhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc-cCCC-
Q 012016 297 TLLV-----------------ATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW-SSCG- 357 (473)
Q Consensus 297 ~l~~-----------------~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~~- 357 (473)
++|- ...+...||||||+.+. ......|++.|+.-. ...|
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~---------------------~~~Q~~Ll~~l~~~~~~~~g~ 127 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLP---------------------PELQAKLLRVLEEGKFTRLGS 127 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS----------------------HHHHHHHHHHHHHSEEECCTS
T ss_pred hhhccccccccccccccCCceeeccceEEeecchhhhH---------------------HHHHHHHHHHHhhchhccccc
Confidence 3331 22367899999999983 345566777776321 1111
Q ss_pred -----CceEEEEecCC
Q 012016 358 -----DERIIVFTTNH 368 (473)
Q Consensus 358 -----~~~iiI~tTN~ 368 (473)
-++-||+||+.
T Consensus 128 ~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 128 DKPVPVDVRIIASTSK 143 (168)
T ss_dssp SSEEE--EEEEEEESS
T ss_pred cccccccceEEeecCc
Confidence 14667777775
No 197
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.88 E-value=2.1e-07 Score=92.27 Aligned_cols=64 Identities=30% Similarity=0.471 Sum_probs=47.6
Q ss_pred ccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC--CceEEcccccc
Q 012016 218 FETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLELTEL 289 (473)
Q Consensus 218 f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~--~~~~~l~~~~~ 289 (473)
=+-++|+.+.++..= .+...++. |+--.+|+|+.||||||||.||-+||++|| .||..++.+++
T Consensus 38 ~dG~VGQ~~AReAaG-vIv~mik~-------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 38 GDGLVGQEEAREAAG-VIVKMIKQ-------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CCcccchHHHHHhhh-HHHHHHHh-------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 367889888777542 22223332 444578999999999999999999999995 67777777765
No 198
>PRK09183 transposase/IS protein; Provisional
Probab=98.88 E-value=3.1e-09 Score=104.12 Aligned_cols=64 Identities=22% Similarity=0.357 Sum_probs=47.0
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc-------CchHHHHHHHH-hccCceEEEeccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR-------SNSDLRTLLVA-TANRSILVVEDIDCT 316 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~-------~~~~l~~l~~~-~~~~sIL~iDdiD~l 316 (473)
..+++|+||||||||+|+.++|+.+ |..+..++..++. ....+...+.. ...+.+|+|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4589999999999999999998765 7778777765542 11224444544 456789999999865
No 199
>PRK06921 hypothetical protein; Provisional
Probab=98.87 E-value=1.6e-08 Score=99.53 Aligned_cols=63 Identities=29% Similarity=0.372 Sum_probs=46.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc----CCceEEcccccccCc-----hHHHHHHHHhccCceEEEecccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELTELRSN-----SDLRTLLVATANRSILVVEDIDC 315 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l----~~~~~~l~~~~~~~~-----~~l~~l~~~~~~~sIL~iDdiD~ 315 (473)
..+++|+||||||||+|+.|||+++ +..++.++..++... ..+...+....+..+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4689999999999999999999987 567777776553211 12233444556789999999954
No 200
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=1.3e-08 Score=102.92 Aligned_cols=123 Identities=12% Similarity=0.187 Sum_probs=90.5
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhcC-------------------------CceEEccccc----------ccCchHH
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYLN-------------------------FDVYDLELTE----------LRSNSDL 295 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l~-------------------------~~~~~l~~~~----------~~~~~~l 295 (473)
..+.+|||+||+|+|||++|.++|+.+. -+++.++... ..+-+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 3467899999999999999999999872 3455555421 1234566
Q ss_pred HHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCC
Q 012016 296 RTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHK 369 (473)
Q Consensus 296 ~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 369 (473)
|++...+. ..-|++||+++.+ +....+.|+..|+... .+..+|++|+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L---------------------d~~a~naLLk~LEep~----~~~~~Ilvth~~ 153 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM---------------------NLQAANSLLKVLEEPP----PQVVFLLVSHAA 153 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC---------------------CHHHHHHHHHHHHhCc----CCCEEEEEeCCh
Confidence 76665543 3468999999987 2455677888887652 347788899999
Q ss_pred CCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 012016 370 EKLDPALLRPGRMDVHVHMSYCTPSGFKLLAA 401 (473)
Q Consensus 370 ~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~ 401 (473)
+.+.|++.+ |+ .++.|+.|+.++....+.
T Consensus 154 ~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 154 DKVLPTIKS--RC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred HhChHHHHH--Hh-hhhcCCCCCHHHHHHHHH
Confidence 999999887 77 578999999988765554
No 201
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.85 E-value=4e-08 Score=104.83 Aligned_cols=209 Identities=19% Similarity=0.320 Sum_probs=121.1
Q ss_pred CCcceeccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEE
Q 012016 204 TDAWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (473)
Q Consensus 204 ~~~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~ 283 (473)
...|.. ...|.+.++|+.+++..++|...+...+. +..+.+-+||+||||||||++++++|+++++.+..
T Consensus 6 ~~~W~~--ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 6 SEPWVE--KYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cCccch--hcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 345644 57789999999998777777776664432 33445678999999999999999999999988775
Q ss_pred c-ccccc----------cC-----------chHHHHH-HHHh-------------ccCceEEEeccccccccccCCcccc
Q 012016 284 L-ELTEL----------RS-----------NSDLRTL-LVAT-------------ANRSILVVEDIDCTIDLQDRLPADI 327 (473)
Q Consensus 284 l-~~~~~----------~~-----------~~~l~~l-~~~~-------------~~~sIL~iDdiD~l~~~~~r~~~~~ 327 (473)
- +.... .+ ...+..+ +... .++.||+|||+-.++.
T Consensus 76 w~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~--------- 146 (519)
T PF03215_consen 76 WINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH--------- 146 (519)
T ss_pred ecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc---------
Confidence 3 22111 00 0111222 1111 2467999999976543
Q ss_pred CCCCCCCccchhHHHHHHHHHhcccccCCCC-ceEEEEe-c------CCCC--------CCCccccCCCceeeEEEeCCC
Q 012016 328 AGEGEGPIQQNKVTLSGFLNFIDGLWSSCGD-ERIIVFT-T------NHKE--------KLDPALLRPGRMDVHVHMSYC 391 (473)
Q Consensus 328 ~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~-~~iiI~t-T------N~~~--------~ld~aLlrpgRfd~~I~~~~p 391 (473)
......-..|...+.. .+. .+|||+| + |... .+++.++.-.++ .+|.|..-
T Consensus 147 --------~~~~~f~~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpI 213 (519)
T PF03215_consen 147 --------RDTSRFREALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPI 213 (519)
T ss_pred --------hhHHHHHHHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCC
Confidence 1112233333334432 122 4777776 1 1111 356666643344 47999998
Q ss_pred CHHHHHHHHHHHhCccccCCHHHHHHHHhcCC-CCHHHHHHHHhc--CCCHHHHHHHHHHHHH
Q 012016 392 TPSGFKLLAANYLGIKEHILFEEIEELISTTQ-VTPAEVAEQLMR--NDDPELVLNGLIEFLK 451 (473)
Q Consensus 392 ~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~-~t~a~i~~~l~~--~~~~~~al~~l~~~l~ 451 (473)
.....+.-+.+.+..+ ......... -...++.+.+.. +||...|+..|.-+..
T Consensus 214 a~T~mkKaL~rI~~~E-------~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 214 APTFMKKALKRILKKE-------ARSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred CHHHHHHHHHHHHHHH-------hhhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 8887777777665433 111111111 122443344432 4888889888875554
No 202
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.85 E-value=3.7e-08 Score=108.69 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=98.0
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCc
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSN 292 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~ 292 (473)
.+|++++|.....+++++.+...... ...+||+|++||||+++|++|.+.. +.|++.+||..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~- 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD- 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh-
Confidence 46888999888888887777766542 3469999999999999999999876 46999999998743
Q ss_pred hHH-HHHHH--------------HhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccC-C
Q 012016 293 SDL-RTLLV--------------ATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSS-C 356 (473)
Q Consensus 293 ~~l-~~l~~--------------~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~-~ 356 (473)
+.+ .++|. ...+++.||||||+.+. ......|+..++.-.-. .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~---------------------~~~Q~~Ll~~l~~~~~~~~ 448 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS---------------------PELQSALLQVLKTGVITRL 448 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC---------------------HHHHHHHHHHHhcCcEEeC
Confidence 222 23332 12356899999999883 23445566666532111 1
Q ss_pred CC------ceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHHhC
Q 012016 357 GD------ERIIVFTTNHK-------EKLDPALLRPGRM-DVHVHMSYCTP--SGFKLLAANYLG 405 (473)
Q Consensus 357 ~~------~~iiI~tTN~~-------~~ld~aLlrpgRf-d~~I~~~~p~~--~~r~~l~~~~l~ 405 (473)
+. .+-||+|||.. ..+.+.|.- |+ ...|++|.... +....|+..|+.
T Consensus 449 ~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~ 511 (638)
T PRK11388 449 DSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALHAFEITIPPLRMRREDIPALVNNKLR 511 (638)
T ss_pred CCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhceeEEeCCChhhhhhHHHHHHHHHHH
Confidence 11 35577877753 122233332 33 34455555432 234566666664
No 203
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.4e-08 Score=101.95 Aligned_cols=137 Identities=22% Similarity=0.300 Sum_probs=94.1
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcCCceEEc-cccccc------CchHHHHHHHHhc--cCceEEEeccccccccccC
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL-ELTELR------SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDR 322 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l-~~~~~~------~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r 322 (473)
+-..+||+||||+|||.||+-+|...++|++.+ +..++. ....+...|..+- .-+||++|||+.+++...
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vp- 615 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVP- 615 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccc-
Confidence 345799999999999999999999999999864 333332 2345677777763 459999999999976321
Q ss_pred CccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCC-ccccCCCceeeEEEeCCCCH-HHHHHHH
Q 012016 323 LPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLD-PALLRPGRMDVHVHMSYCTP-SGFKLLA 400 (473)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld-~aLlrpgRfd~~I~~~~p~~-~~r~~l~ 400 (473)
-+...++.++..|+-++...... |...+|++||...+-|. -.++. .|+..|++|..+. ++...++
T Consensus 616 ----------IGPRfSN~vlQaL~VllK~~ppk-g~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl 682 (744)
T KOG0741|consen 616 ----------IGPRFSNLVLQALLVLLKKQPPK-GRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVL 682 (744)
T ss_pred ----------cCchhhHHHHHHHHHHhccCCCC-CceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHH
Confidence 22345667777777777765322 22345555666655443 24556 8899999998776 5555555
Q ss_pred HH
Q 012016 401 AN 402 (473)
Q Consensus 401 ~~ 402 (473)
..
T Consensus 683 ~~ 684 (744)
T KOG0741|consen 683 EE 684 (744)
T ss_pred HH
Confidence 53
No 204
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.3e-08 Score=111.29 Aligned_cols=153 Identities=22% Similarity=0.335 Sum_probs=105.2
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceEEccc
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLEL 286 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~l~~ 286 (473)
.+|-++|.++..+.+++.|.+.. +.+-+|.|+||+|||.++..+|... +..++.+|+
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 57788998888888877665332 4577999999999999999999876 678899999
Q ss_pred ccccC--------chHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCC
Q 012016 287 TELRS--------NSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSC 356 (473)
Q Consensus 287 ~~~~~--------~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~ 356 (473)
+.+.. +..++.++.... .+.|||||||+.+.+...- .| . ..-.+.+|.-+- ..
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~---------~G---~-a~DAaNiLKPaL----AR 297 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGAT---------EG---G-AMDAANLLKPAL----AR 297 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcc---------cc---c-ccchhhhhHHHH----hc
Confidence 88742 456677776654 3799999999999751110 01 0 111222332221 22
Q ss_pred CCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012016 357 GDERIIVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANY 403 (473)
Q Consensus 357 ~~~~iiI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~ 403 (473)
| +.-+|++|..-+ .=|+||-| ||. .|.+..|+.++-..|++..
T Consensus 298 G-eL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 298 G-ELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred C-CeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHH
Confidence 3 344555443221 23899999 996 7899999999988777753
No 205
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.75 E-value=7.4e-07 Score=86.30 Aligned_cols=51 Identities=29% Similarity=0.448 Sum_probs=37.2
Q ss_pred cccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 219 ETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 219 ~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..++|+...++.. ..+.+.++.+. --.|++||.||||||||.||-+|+.+|
T Consensus 38 ~g~vGQ~~AReAa-giivdlik~Kk-------maGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 38 AGFVGQENAREAA-GIIVDLIKSKK-------MAGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred cccccchhhhhhh-hHHHHHHHhhh-------ccCcEEEEecCCCCchhHHHHHHHHHh
Confidence 4577887777653 23333444332 125799999999999999999999999
No 206
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.8e-08 Score=101.80 Aligned_cols=130 Identities=22% Similarity=0.311 Sum_probs=85.0
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC--------chHHHHHHHHh------ccCceEEEeccccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS--------NSDLRTLLVAT------ANRSILVVEDIDCTID 318 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~--------~~~l~~l~~~~------~~~sIL~iDdiD~l~~ 318 (473)
+.++||.||.|+|||.|++-||+.+++||...||+.+.. ++-+.+++..+ .+..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 458999999999999999999999999999999998832 24466666655 3789999999999963
Q ss_pred cccCCccccCCCCCCCccchhHHHHHHHHHhcccc---------cCCCCceEEEEecCCC-------CCCCccccCCCce
Q 012016 319 LQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW---------SSCGDERIIVFTTNHK-------EKLDPALLRPGRM 382 (473)
Q Consensus 319 ~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~---------~~~~~~~iiI~tTN~~-------~~ld~aLlrpgRf 382 (473)
....-.. ..+-...-....||..++|-. ....++.+.|=|||-. ..||.-+.| |+
T Consensus 306 ~~~~i~~-------~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~ 376 (564)
T KOG0745|consen 306 KAESIHT-------SRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RL 376 (564)
T ss_pred cCccccc-------cccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hh
Confidence 2111000 001122345567888887641 1223345555566542 345555555 44
Q ss_pred e-eEEEeCCC
Q 012016 383 D-VHVHMSYC 391 (473)
Q Consensus 383 d-~~I~~~~p 391 (473)
+ ..+-|..|
T Consensus 377 ~d~slGFg~~ 386 (564)
T KOG0745|consen 377 DDKSLGFGAP 386 (564)
T ss_pred cchhcccCCC
Confidence 3 44555555
No 207
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.74 E-value=3.2e-08 Score=87.52 Aligned_cols=78 Identities=28% Similarity=0.371 Sum_probs=54.1
Q ss_pred cchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC---ceEEcccccccCchHHHHHH
Q 012016 223 MEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF---DVYDLELTELRSNSDLRTLL 299 (473)
Q Consensus 223 ~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~---~~~~l~~~~~~~~~~l~~l~ 299 (473)
|.....+++.+.+...... ...+||+|+|||||+++|++|....+. +++.+++.... .+++
T Consensus 2 G~S~~~~~l~~~l~~~a~~-----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l 65 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS-----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELL 65 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS-----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHH
Confidence 3344556666666655432 357999999999999999999998753 56666776643 3444
Q ss_pred HHhccCceEEEecccccc
Q 012016 300 VATANRSILVVEDIDCTI 317 (473)
Q Consensus 300 ~~~~~~sIL~iDdiD~l~ 317 (473)
.. ..+..|+|+|||.+.
T Consensus 66 ~~-a~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 66 EQ-AKGGTLYLKNIDRLS 82 (138)
T ss_dssp HH-CTTSEEEEECGCCS-
T ss_pred HH-cCCCEEEECChHHCC
Confidence 44 488899999999983
No 208
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.73 E-value=7.4e-08 Score=103.18 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=100.3
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccC
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRS 291 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~ 291 (473)
..+|++++|.....+.+.+.+..+-.. ...+||+|++||||+++|++|.+.. +.|++.++|..+..
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 357999999998888888877765442 3479999999999999999999765 67999999998743
Q ss_pred chHHHHHHH-------------------HhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc
Q 012016 292 NSDLRTLLV-------------------ATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL 352 (473)
Q Consensus 292 ~~~l~~l~~-------------------~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 352 (473)
..+...+. ....++.||||||+.+. ......|+..++.-
T Consensus 277 -~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp---------------------~~~Q~~Ll~~L~~~ 334 (526)
T TIGR02329 277 -SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMP---------------------LPLQTRLLRVLEER 334 (526)
T ss_pred -hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCC---------------------HHHHHHHHHHHhcC
Confidence 22332221 22356889999999883 33455566666431
Q ss_pred c--cCCC-----CceEEEEecCCC-C------CCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHHhCc
Q 012016 353 W--SSCG-----DERIIVFTTNHK-E------KLDPALLRPGRMD-VHVHMSYCTP--SGFKLLAANYLGI 406 (473)
Q Consensus 353 ~--~~~~-----~~~iiI~tTN~~-~------~ld~aLlrpgRfd-~~I~~~~p~~--~~r~~l~~~~l~~ 406 (473)
. .-.+ -++-+|++||.. . .+.+.|.. |+. ..|++|+... +....|+..|+..
T Consensus 335 ~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 335 EVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred cEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 1 0001 123467777653 1 22233333 443 4566665433 3456677777653
No 209
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=4.5e-07 Score=87.87 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=83.0
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhcC----------------------CceEEccccc-ccCchHHHHHHHHhc----
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYLN----------------------FDVYDLELTE-LRSNSDLRTLLVATA---- 303 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l~----------------------~~~~~l~~~~-~~~~~~l~~l~~~~~---- 303 (473)
.++.++||+||+|+||..+|.++|..+- -+++.+.... ....+.++++.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3567999999999999999999998871 2333322111 123345555554332
Q ss_pred ---cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCC
Q 012016 304 ---NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPG 380 (473)
Q Consensus 304 ---~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpg 380 (473)
..-|++|+++|.+ .....+.||..++. ++.+.++|++|+.++.+.|.+++
T Consensus 85 e~~~~KV~II~~ae~m---------------------~~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~S-- 137 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL---------------------NKQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILS-- 137 (261)
T ss_pred hcCCCEEEEeccHhhh---------------------CHHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhh--
Confidence 2479999999987 35678899999985 45679999999999999999998
Q ss_pred ceeeEEEeCCC
Q 012016 381 RMDVHVHMSYC 391 (473)
Q Consensus 381 Rfd~~I~~~~p 391 (473)
|+. .+.++.+
T Consensus 138 RCq-~~~~~~~ 147 (261)
T PRK05818 138 RCV-QYVVLSK 147 (261)
T ss_pred hee-eeecCCh
Confidence 874 4667666
No 210
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.72 E-value=9.9e-08 Score=97.07 Aligned_cols=155 Identities=23% Similarity=0.274 Sum_probs=104.6
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC-------Cc--------
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------FD-------- 280 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~-------~~-------- 280 (473)
-.|.-++|++..|..|...... |--.|+|+-|+.|||||++++|||.-|. .+
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 4688899999999887654332 2235899999999999999999999882 11
Q ss_pred -------------------------eEEcccccc----cCchHHHHHHH-----------HhccCceEEEeccccccccc
Q 012016 281 -------------------------VYDLELTEL----RSNSDLRTLLV-----------ATANRSILVVEDIDCTIDLQ 320 (473)
Q Consensus 281 -------------------------~~~l~~~~~----~~~~~l~~l~~-----------~~~~~sIL~iDdiD~l~~~~ 320 (473)
++.+.+... .+.=++.+.+. ...++.||+|||+..|-
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~--- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD--- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc---
Confidence 111111111 01111222222 12367999999998762
Q ss_pred cCCccccCCCCCCCccchhHHHHHHHHHhc---------ccccCCCCceEEEEecCCC-CCCCccccCCCceeeEEEeCC
Q 012016 321 DRLPADIAGEGEGPIQQNKVTLSGFLNFID---------GLWSSCGDERIIVFTTNHK-EKLDPALLRPGRMDVHVHMSY 390 (473)
Q Consensus 321 ~r~~~~~~~~~~~~~~~~~~~ls~LL~~ld---------g~~~~~~~~~iiI~tTN~~-~~ld~aLlrpgRfd~~I~~~~ 390 (473)
......||+.+. |+.-..+-+.++|+|+|.- ..|-|-|+. ||..+|...+
T Consensus 158 ------------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~ 217 (423)
T COG1239 158 ------------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHY 217 (423)
T ss_pred ------------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccC
Confidence 356666776663 3333334568999999976 578889999 9999999988
Q ss_pred C-CHHHHHHHHHHHhCc
Q 012016 391 C-TPSGFKLLAANYLGI 406 (473)
Q Consensus 391 p-~~~~r~~l~~~~l~~ 406 (473)
| +.++|.+|..+-+..
T Consensus 218 ~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 218 PLDLEERVEIIRRRLAF 234 (423)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 7 456677887776554
No 211
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.71 E-value=7.3e-08 Score=103.25 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=68.4
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHh-----------cCCceEEc
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY-----------LNFDVYDL 284 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~-----------l~~~~~~l 284 (473)
.+|++++|.....+.+.+.+..+-.. ...+||+|++||||+++|++|.+. -+.|++.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46899999988888887777655432 347999999999999999999987 46799999
Q ss_pred ccccccCchHHHHHH-------------------HHhccCceEEEecccccc
Q 012016 285 ELTELRSNSDLRTLL-------------------VATANRSILVVEDIDCTI 317 (473)
Q Consensus 285 ~~~~~~~~~~l~~l~-------------------~~~~~~sIL~iDdiD~l~ 317 (473)
+|..+.. ..+...+ .....++.||||||+.+.
T Consensus 285 nCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp 335 (538)
T PRK15424 285 NCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 335 (538)
T ss_pred ecccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCC
Confidence 9998743 2233222 123356899999999883
No 212
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.71 E-value=4.6e-08 Score=96.48 Aligned_cols=137 Identities=21% Similarity=0.405 Sum_probs=78.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCc---eEEcccccccCchHHHHHHHHh-------------ccCceEEEeccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELTELRSNSDLRTLLVAT-------------ANRSILVVEDIDCT 316 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~---~~~l~~~~~~~~~~l~~l~~~~-------------~~~sIL~iDdiD~l 316 (473)
.+.+||.||+|||||++++.+-..+.-. +..+.++...+...+++++... .++.|+||||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 4689999999999999998877766432 3344555443444455444322 13479999999864
Q ss_pred cccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCC------CceEEEEecCCCC---CCCccccCCCceeeEEE
Q 012016 317 IDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCG------DERIIVFTTNHKE---KLDPALLRPGRMDVHVH 387 (473)
Q Consensus 317 ~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~------~~~iiI~tTN~~~---~ld~aLlrpgRfd~~I~ 387 (473)
.. + ..+....-..+.++++. .|.+.... .++.+|++.|... .+++.|+| .| ..+.
T Consensus 113 ~~--d----------~ygtq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~ 176 (272)
T PF12775_consen 113 QP--D----------KYGTQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILN 176 (272)
T ss_dssp ---------------TTS--HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE
T ss_pred CC--C----------CCCCcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEE
Confidence 32 0 00111112333333321 23333211 2467788887542 47888888 77 4789
Q ss_pred eCCCCHHHHHHHHHHHhC
Q 012016 388 MSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 388 ~~~p~~~~r~~l~~~~l~ 405 (473)
+++|+.++...|+..++.
T Consensus 177 ~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ----TCCHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHh
Confidence 999999998888877665
No 213
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.68 E-value=8.3e-08 Score=102.07 Aligned_cols=142 Identities=18% Similarity=0.217 Sum_probs=87.9
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC----------------
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF---------------- 279 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~---------------- 279 (473)
..|+++.|+...++.+.-. . .....++|.||||||||+++++++..+.-
T Consensus 189 ~d~~dv~Gq~~~~~al~~a----a-----------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA----A-----------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh----c-----------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 4789999987776554221 1 12357999999999999999999975521
Q ss_pred ------------ceEEcccccc-----cCchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 280 ------------DVYDLELTEL-----RSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 280 ------------~~~~l~~~~~-----~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
|+.....+.. .+....+.-......+.+|||||++.+ ....+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~---------------------~~~~~ 312 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEF---------------------KRSVL 312 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhC---------------------CHHHH
Confidence 1111111100 000001111223446789999999876 24556
Q ss_pred HHHHHHhcccc---------cCCCCceEEEEecCCC------C-----------------CCCccccCCCceeeEEEeCC
Q 012016 343 SGFLNFIDGLW---------SSCGDERIIVFTTNHK------E-----------------KLDPALLRPGRMDVHVHMSY 390 (473)
Q Consensus 343 s~LL~~ldg~~---------~~~~~~~iiI~tTN~~------~-----------------~ld~aLlrpgRfd~~I~~~~ 390 (473)
..|+..|+.-. ..-..+..+|+++|.. + ++...|+. |||.+++++.
T Consensus 313 ~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~ 390 (499)
T TIGR00368 313 DALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPL 390 (499)
T ss_pred HHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcC
Confidence 66666664321 0112357888888852 1 57778888 9999999999
Q ss_pred CCHHH
Q 012016 391 CTPSG 395 (473)
Q Consensus 391 p~~~~ 395 (473)
++.++
T Consensus 391 ~~~~~ 395 (499)
T TIGR00368 391 LPPEK 395 (499)
T ss_pred CCHHH
Confidence 87764
No 214
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.68 E-value=1.6e-07 Score=104.46 Aligned_cols=89 Identities=19% Similarity=0.315 Sum_probs=67.8
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCc
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSN 292 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~ 292 (473)
..|++++|.....+.+.+.+...... ...+||+|++|||||++|++|.... +.+++.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~- 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA- 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-
Confidence 57889999999888888888765432 3479999999999999999999865 57999999987632
Q ss_pred hHHHH-H-----------------HHHhccCceEEEeccccc
Q 012016 293 SDLRT-L-----------------LVATANRSILVVEDIDCT 316 (473)
Q Consensus 293 ~~l~~-l-----------------~~~~~~~sIL~iDdiD~l 316 (473)
..+.. + ......++.|||||||.+
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L 482 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 482 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhC
Confidence 11111 1 112345789999999987
No 215
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.67 E-value=1.7e-07 Score=100.85 Aligned_cols=156 Identities=13% Similarity=0.235 Sum_probs=96.8
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccC
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRS 291 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~ 291 (473)
..+|++++|.....+.+++.+...... ...+||+|++||||+++|+++.... +.|++.++|..+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~-----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAML-----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 368999999888777777777654332 3469999999999999999987654 46899999998743
Q ss_pred chHHHH-HH-----------------HHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc-
Q 012016 292 NSDLRT-LL-----------------VATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL- 352 (473)
Q Consensus 292 ~~~l~~-l~-----------------~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~- 352 (473)
..+.. +| ....+++.|||||||.+.. .....|++++..-
T Consensus 269 -~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~---------------------~~Q~~Ll~~l~~~~ 326 (520)
T PRK10820 269 -DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP---------------------RMQAKLLRFLNDGT 326 (520)
T ss_pred -HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH---------------------HHHHHHHHHHhcCC
Confidence 22222 22 1123568899999998832 3335566666431
Q ss_pred ccCCC------CceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHHhC
Q 012016 353 WSSCG------DERIIVFTTNHK-------EKLDPALLRPGRMD-VHVHMSYCTP--SGFKLLAANYLG 405 (473)
Q Consensus 353 ~~~~~------~~~iiI~tTN~~-------~~ld~aLlrpgRfd-~~I~~~~p~~--~~r~~l~~~~l~ 405 (473)
....| .++-||+||+.+ ..+.+.|.. |+. ..|++|.... +....|+..|+.
T Consensus 327 ~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~ 393 (520)
T PRK10820 327 FRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVA 393 (520)
T ss_pred cccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHH
Confidence 11111 124567766653 234455555 654 4455555432 234455555554
No 216
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.8e-06 Score=85.63 Aligned_cols=119 Identities=19% Similarity=0.249 Sum_probs=85.7
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcC------------------------CceEEccccc-ccCchHHHHHHHHhc---
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLN------------------------FDVYDLELTE-LRSNSDLRTLLVATA--- 303 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~------------------------~~~~~l~~~~-~~~~~~l~~l~~~~~--- 303 (473)
.+.+|||+|| +||+.+|.++|..+- -+++.+.... ....+.++++.....
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 4678999996 689999999998761 2333333221 123456776665543
Q ss_pred ---cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCC
Q 012016 304 ---NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPG 380 (473)
Q Consensus 304 ---~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpg 380 (473)
...|++||++|.+ .....+.||+.++. ++.+.++|++|+.++.+-|.+++
T Consensus 101 ~~~~~kV~II~~ad~m---------------------~~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~S-- 153 (290)
T PRK07276 101 YEGKQQVFIIKDADKM---------------------HVNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKS-- 153 (290)
T ss_pred ccCCcEEEEeehhhhc---------------------CHHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHH--
Confidence 3579999999987 34677899999985 45668999999999999999998
Q ss_pred ceeeEEEeCCCCHHHHHHHHH
Q 012016 381 RMDVHVHMSYCTPSGFKLLAA 401 (473)
Q Consensus 381 Rfd~~I~~~~p~~~~r~~l~~ 401 (473)
|+ .+|.|+. +.+...+++.
T Consensus 154 Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 154 RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred cc-eeeeCCC-cHHHHHHHHH
Confidence 87 5788876 5555444443
No 217
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.65 E-value=2.7e-07 Score=87.63 Aligned_cols=158 Identities=25% Similarity=0.333 Sum_probs=84.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCC---ceEEccccccc---------------------------------------
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNF---DVYDLELTELR--------------------------------------- 290 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~---~~~~l~~~~~~--------------------------------------- 290 (473)
...++|+||.|+|||+|++.+.+.+.- ..+.++.....
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 468999999999999999999998832 11111110000
Q ss_pred --CchHHHHHHHHh---ccCceEEEecccccc-ccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 --SNSDLRTLLVAT---ANRSILVVEDIDCTI-DLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 --~~~~l~~l~~~~---~~~sIL~iDdiD~l~-~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
....+..++... ..+.||+|||++.+. . .......+..|.+.++..... .++.+|+
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~--~~~~~v~ 161 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIA----------------SEEDKDFLKSLRSLLDSLLSQ--QNVSIVI 161 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBC----------------TTTTHHHHHHHHHHHHH------TTEEEEE
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhc----------------ccchHHHHHHHHHHHhhcccc--CCceEEE
Confidence 011222333322 245899999999986 2 112355667777777764332 3344444
Q ss_pred ecCCC----C--CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcccc--CCHHHHHHHHhcCCCCHHHHHH
Q 012016 365 TTNHK----E--KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEH--ILFEEIEELISTTQVTPAEVAE 431 (473)
Q Consensus 365 tTN~~----~--~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~--~l~~~i~~l~~~~~~t~a~i~~ 431 (473)
++... + .-.+.+.. |+.. +.++..+.++..+++...+..... ...++++.+..-++-.|.-|..
T Consensus 162 ~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 162 TGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 44332 1 11223333 8876 999999999999999886543311 2456666666666677766643
No 218
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.65 E-value=1.1e-06 Score=86.31 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=83.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCC-ceEEcc-----cc--cc------------cCc------hHHHHHHHH---hcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNF-DVYDLE-----LT--EL------------RSN------SDLRTLLVA---TAN 304 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~-~~~~l~-----~~--~~------------~~~------~~l~~l~~~---~~~ 304 (473)
..++|+||+|+|||++++.+++.+.. .+.... .+ ++ ... ..+...+.. ..+
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999999862 222111 10 00 000 112222211 235
Q ss_pred CceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCC--CCCCC----ccccC
Q 012016 305 RSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNH--KEKLD----PALLR 378 (473)
Q Consensus 305 ~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~--~~~ld----~aLlr 378 (473)
+.+|+|||++.+.. .....+..|.+... ..+..+.||++... .+.+. ..+.+
T Consensus 124 ~~vliiDe~~~l~~------------------~~~~~l~~l~~~~~----~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~ 181 (269)
T TIGR03015 124 RALLVVDEAQNLTP------------------ELLEELRMLSNFQT----DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ 181 (269)
T ss_pred CeEEEEECcccCCH------------------HHHHHHHHHhCccc----CCCCeEEEEEcCCHHHHHHHcCchhHHHHh
Confidence 68999999997631 11222333332211 11122333333321 12221 13445
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHHhCccc-----cCCHHHHHHHHhcCCCCHHHHHHH
Q 012016 379 PGRMDVHVHMSYCTPSGFKLLAANYLGIKE-----HILFEEIEELISTTQVTPAEVAEQ 432 (473)
Q Consensus 379 pgRfd~~I~~~~p~~~~r~~l~~~~l~~~~-----~~l~~~i~~l~~~~~~t~a~i~~~ 432 (473)
|+...++++..+.++...++...+.... ....+.++.+.+.++-.|..|...
T Consensus 182 --r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l 238 (269)
T TIGR03015 182 --RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINIL 238 (269)
T ss_pred --heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHH
Confidence 8888999999999999888887765321 122355555555555555555443
No 219
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.63 E-value=1.5e-07 Score=99.91 Aligned_cols=119 Identities=21% Similarity=0.307 Sum_probs=77.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCC----------ceEEcccc-----cc------------------cCchHHHHHH
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNF----------DVYDLELT-----EL------------------RSNSDLRTLL 299 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~----------~~~~l~~~-----~~------------------~~~~~l~~l~ 299 (473)
...++|.||||||||++++.|+..+.- .++.+... .+ .+....+.-.
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE 289 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH
Confidence 457999999999999999999987631 11111000 00 0001112222
Q ss_pred HHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcc-cc--c------CCCCceEEEEecCCCC
Q 012016 300 VATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDG-LW--S------SCGDERIIVFTTNHKE 370 (473)
Q Consensus 300 ~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-~~--~------~~~~~~iiI~tTN~~~ 370 (473)
.....+.+|||||++.+ ....+..|++.|+. .. + ....+..+|+|+|...
T Consensus 290 l~~A~gGvLfLDEi~e~---------------------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~p 348 (506)
T PRK09862 290 ISLAHNGVLFLDELPEF---------------------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSP 348 (506)
T ss_pred hhhccCCEEecCCchhC---------------------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCcc
Confidence 33456799999999865 34667777877743 21 0 1124578899999752
Q ss_pred ---------------------CCCccccCCCceeeEEEeCCCCHH
Q 012016 371 ---------------------KLDPALLRPGRMDVHVHMSYCTPS 394 (473)
Q Consensus 371 ---------------------~ld~aLlrpgRfd~~I~~~~p~~~ 394 (473)
++..+++. |||.++.+++|+.+
T Consensus 349 cG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 349 TGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred ceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 46778888 99999999999876
No 220
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=1.5e-06 Score=86.79 Aligned_cols=122 Identities=16% Similarity=0.209 Sum_probs=90.8
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc--------C---C--ceEEcc--cccccCchHHHHHHHHhc-------cCceEE
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL--------N---F--DVYDLE--LTELRSNSDLRTLLVATA-------NRSILV 309 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l--------~---~--~~~~l~--~~~~~~~~~l~~l~~~~~-------~~sIL~ 309 (473)
.++.|||+|+.|.||+.++.++++.+ + . ++..++ ... .+...++++....+ .+-|++
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-i~vd~Ir~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-LSKSEFLSAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-CCHHHHHHHHHHhccCCcccCCceEEE
Confidence 45789999999999999999999987 1 1 233343 222 23356666665542 567999
Q ss_pred EeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeC
Q 012016 310 VEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMS 389 (473)
Q Consensus 310 iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~ 389 (473)
||++|.+ .....+.||..|+. +++..++|++|+.++.+-|+++. |+ .+++|+
T Consensus 96 I~~~e~m---------------------~~~a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~ 147 (299)
T PRK07132 96 IKNIEKT---------------------SNSLLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVK 147 (299)
T ss_pred Eeccccc---------------------CHHHHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECC
Confidence 9999876 24567789999986 45668888888888999999987 76 579999
Q ss_pred CCCHHHHHHHHHH
Q 012016 390 YCTPSGFKLLAAN 402 (473)
Q Consensus 390 ~p~~~~r~~l~~~ 402 (473)
.++.++....+..
T Consensus 148 ~l~~~~l~~~l~~ 160 (299)
T PRK07132 148 EPDQQKILAKLLS 160 (299)
T ss_pred CCCHHHHHHHHHH
Confidence 9998887755543
No 221
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=4.2e-07 Score=89.83 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=83.0
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcC----------------CceEEccccc---ccCchHHHHHHHHhc------cCc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLN----------------FDVYDLELTE---LRSNSDLRTLLVATA------NRS 306 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~----------------~~~~~l~~~~---~~~~~~l~~l~~~~~------~~s 306 (473)
.+.+|||+||+|+||+.+|.++|..+- -+++.+.... ..+-+.++++..... ..-
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 467899999999999999999999872 2344342211 123455666555443 346
Q ss_pred eEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEE
Q 012016 307 ILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHV 386 (473)
Q Consensus 307 IL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I 386 (473)
|++||++|.+ .....+.||+.++. ++++.++|+.|+.++.|.|.+++ |+. .+
T Consensus 98 v~ii~~ad~m---------------------t~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~ 149 (290)
T PRK05917 98 IYIIHEADRM---------------------TLDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRS--RSL-SI 149 (290)
T ss_pred EEEEechhhc---------------------CHHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHh--cce-EE
Confidence 9999999988 34677889999985 45679999999999999999998 874 67
Q ss_pred EeCCC
Q 012016 387 HMSYC 391 (473)
Q Consensus 387 ~~~~p 391 (473)
.|+.+
T Consensus 150 ~~~~~ 154 (290)
T PRK05917 150 HIPME 154 (290)
T ss_pred Eccch
Confidence 77754
No 222
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.61 E-value=7.3e-08 Score=81.49 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=39.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHHHhccCceEEEeccccc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVATANRSILVVEDIDCT 316 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l 316 (473)
|.||||||+|||++++.||..+.-.+-......+-....-.+.+..-....++++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 5799999999999999999887533311111111111122334555667899999999865
No 223
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.61 E-value=4.6e-07 Score=97.34 Aligned_cols=154 Identities=15% Similarity=0.166 Sum_probs=98.0
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCch
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNS 293 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~ 293 (473)
.+++++|.....+.+.+.+...-.. ...+||+|++||||+++|++|.... +.+++.++|..+.. .
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~-----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS-----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-S 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-H
Confidence 5688999988888888877765432 4579999999999999999999875 57999999998743 2
Q ss_pred HHHH-HH-----------------HHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc-c
Q 012016 294 DLRT-LL-----------------VATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW-S 354 (473)
Q Consensus 294 ~l~~-l~-----------------~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~ 354 (473)
.+.. +| ....+++.|||||||.+. ......|++.++.-. .
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~---------------------~~~Q~~Ll~~l~~~~~~ 311 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELP---------------------LALQAKLLRVLQYGEIQ 311 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCC---------------------HHHHHHHHHHHhcCCEe
Confidence 2222 22 123456889999999883 234455666664321 0
Q ss_pred C------CCCceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHHhC
Q 012016 355 S------CGDERIIVFTTNHK-------EKLDPALLRPGRMD-VHVHMSYCTP--SGFKLLAANYLG 405 (473)
Q Consensus 355 ~------~~~~~iiI~tTN~~-------~~ld~aLlrpgRfd-~~I~~~~p~~--~~r~~l~~~~l~ 405 (473)
. ...++-||+|||.. ..+.+.|.. |+. ..|++|.... +....|+..|+.
T Consensus 312 ~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~ 376 (509)
T PRK05022 312 RVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLE 376 (509)
T ss_pred eCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHH
Confidence 0 01135677777653 234445544 553 3355555432 234456666654
No 224
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.59 E-value=6.8e-07 Score=86.04 Aligned_cols=164 Identities=15% Similarity=0.208 Sum_probs=110.4
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-CCc----------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFD---------- 280 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-~~~---------- 280 (473)
...|.+|+.+....+....+..... ..+ -.++|+|||+|+||-+.+.|+-+++ |.-
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~----~~d---------~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSS----TGD---------FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcc----cCC---------CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 3456788888887766665533221 011 1379999999999999999999988 111
Q ss_pred ------------------eEEcccccccCc--hHHHHHHHHhcc-----------CceEEEeccccccccccCCccccCC
Q 012016 281 ------------------VYDLELTELRSN--SDLRTLLVATAN-----------RSILVVEDIDCTIDLQDRLPADIAG 329 (473)
Q Consensus 281 ------------------~~~l~~~~~~~~--~~l~~l~~~~~~-----------~sIL~iDdiD~l~~~~~r~~~~~~~ 329 (473)
.+.++.++.+.. --+++++...++ -.+++|.|+|.+.
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT------------ 140 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT------------ 140 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh------------
Confidence 122333333322 234566655431 2689999999883
Q ss_pred CCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcccc
Q 012016 330 EGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEH 409 (473)
Q Consensus 330 ~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~ 409 (473)
+....+|-..|+...+. .-+|+.+|....+=+++.. |+ ..|.+|.|+.++...++.+.+..++.
T Consensus 141 ---------~dAQ~aLRRTMEkYs~~----~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l 204 (351)
T KOG2035|consen 141 ---------RDAQHALRRTMEKYSSN----CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGL 204 (351)
T ss_pred ---------HHHHHHHHHHHHHHhcC----ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 33445566666655443 4477788888888888987 76 57999999999999999998887766
Q ss_pred CCHHHHH
Q 012016 410 ILFEEIE 416 (473)
Q Consensus 410 ~l~~~i~ 416 (473)
.+..++.
T Consensus 205 ~lp~~~l 211 (351)
T KOG2035|consen 205 QLPKELL 211 (351)
T ss_pred cCcHHHH
Confidence 6655443
No 225
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.59 E-value=8.4e-07 Score=85.33 Aligned_cols=133 Identities=23% Similarity=0.200 Sum_probs=82.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHHHhc-cCceEEEeccccccccccCCccccCCCC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVATA-NRSILVVEDIDCTIDLQDRLPADIAGEG 331 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~-~~sIL~iDdiD~l~~~~~r~~~~~~~~~ 331 (473)
..|-.++||+|||||.+++++|+.+|.+++.++|++..+-..+.+++..+. .++-+++||++.+-.
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~------------- 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSE------------- 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSH-------------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhH-------------
Confidence 457789999999999999999999999999999999888889999998775 689999999998731
Q ss_pred CCCccchhHHHHHHHHHh-cccccCC------C------CceEEEEecCC----CCCCCccccCCCceeeEEEeCCCCHH
Q 012016 332 EGPIQQNKVTLSGFLNFI-DGLWSSC------G------DERIIVFTTNH----KEKLDPALLRPGRMDVHVHMSYCTPS 394 (473)
Q Consensus 332 ~~~~~~~~~~ls~LL~~l-dg~~~~~------~------~~~iiI~tTN~----~~~ld~aLlrpgRfd~~I~~~~p~~~ 394 (473)
..-..+++.+..+ +.+.... + ...-+++|.|. ...||+.|.. +-+.|.|..||..
T Consensus 99 -----~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~ 170 (231)
T PF12774_consen 99 -----EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLS 170 (231)
T ss_dssp -----HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HH
T ss_pred -----HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHH
Confidence 1122222222222 1111110 0 11234556663 3567777764 3478999999999
Q ss_pred HHHHHHHHHhCc
Q 012016 395 GFKLLAANYLGI 406 (473)
Q Consensus 395 ~r~~l~~~~l~~ 406 (473)
...++.-.-.+.
T Consensus 171 ~I~ei~L~s~GF 182 (231)
T PF12774_consen 171 LIAEILLLSQGF 182 (231)
T ss_dssp HHHHHHHHCCCT
T ss_pred HHHHHHHHHcCc
Confidence 877666544443
No 226
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.59 E-value=2.4e-07 Score=90.83 Aligned_cols=157 Identities=17% Similarity=0.215 Sum_probs=100.5
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCc------eEE
Q 012016 210 VNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------VYD 283 (473)
Q Consensus 210 ~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~------~~~ 283 (473)
++...|..++++++..+....+.+ |.. .+. -.+.|+|||||||||+.+.|.|+.+-.+ +..
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~----~~~-------~~~--lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le 98 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENR----YSG-------MPG--LPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE 98 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHH----hcc-------CCC--CCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence 346788999999998766554433 321 111 2289999999999999999999988442 233
Q ss_pred cccccccCchHH---HHHHHHhc---------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcc
Q 012016 284 LELTELRSNSDL---RTLLVATA---------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDG 351 (473)
Q Consensus 284 l~~~~~~~~~~l---~~l~~~~~---------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 351 (473)
++.++-.+-.-. ...|..+. ....+++||.|++. +...++|-..+..
T Consensus 99 lnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT---------------------~~AQnALRRviek 157 (360)
T KOG0990|consen 99 LNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT---------------------RDAQNALRRVIEK 157 (360)
T ss_pred hhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh---------------------HHHHHHHHHHHHH
Confidence 444443222112 22333333 34689999999884 2333444444444
Q ss_pred cccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 352 LWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 352 ~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
.. .+.-+...+|++..+.|++.. ||. ...|...+..+-.....+....+
T Consensus 158 ~t----~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 158 YT----ANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred hc----cceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcc
Confidence 32 346666889999999999997 664 35666667666666666665544
No 227
>PF13173 AAA_14: AAA domain
Probab=98.58 E-value=2.9e-07 Score=80.28 Aligned_cols=115 Identities=18% Similarity=0.284 Sum_probs=71.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC--CceEEcccccccCch----HHHHHHHHh--ccCceEEEeccccccccccCCcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLELTELRSNS----DLRTLLVAT--ANRSILVVEDIDCTIDLQDRLPA 325 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~--~~~~~l~~~~~~~~~----~l~~l~~~~--~~~sIL~iDdiD~l~~~~~r~~~ 325 (473)
+.++|+||.|+|||++++.++..+. ..++.+++.+..... .+.+.+... ..+.+||||||..+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~------- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPD------- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhcc-------
Confidence 4689999999999999999999886 788888877653211 133444333 3679999999987621
Q ss_pred ccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCcc--ccCCCceeeEEEeCCCCHHHH
Q 012016 326 DIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPA--LLRPGRMDVHVHMSYCTPSGF 396 (473)
Q Consensus 326 ~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~a--LlrpgRfd~~I~~~~p~~~~r 396 (473)
....+..+.+ . . .+.-||+|+.....+... -.-+||.. .+++.+.+..++
T Consensus 76 ------------~~~~lk~l~d---~----~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E~ 127 (128)
T PF13173_consen 76 ------------WEDALKFLVD---N----G-PNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFREF 127 (128)
T ss_pred ------------HHHHHHHHHH---h----c-cCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHHh
Confidence 2233333333 1 1 223444444433322111 11246885 789998888764
No 228
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.54 E-value=3.7e-07 Score=101.55 Aligned_cols=128 Identities=19% Similarity=0.226 Sum_probs=81.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCC-------ceEEcccccccC-c----h--HHHHHHHHhccCceEEEecccccccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNF-------DVYDLELTELRS-N----S--DLRTLLVATANRSILVVEDIDCTIDL 319 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~-------~~~~l~~~~~~~-~----~--~l~~l~~~~~~~sIL~iDdiD~l~~~ 319 (473)
..+||.|+||||||.+++++++.... +...+.+..... . . .+..-....+.+++++|||+|.+.
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms-- 570 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCH-- 570 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCC--
Confidence 36999999999999999999986533 333333332210 0 0 000000112357899999999873
Q ss_pred ccCCccccCCCCCCCccchhHHHHHHHHHhccc---------ccCCCCceEEEEecCCCC-------------CCCcccc
Q 012016 320 QDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL---------WSSCGDERIIVFTTNHKE-------------KLDPALL 377 (473)
Q Consensus 320 ~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~iiI~tTN~~~-------------~ld~aLl 377 (473)
......|+..|+.- ...-....-||+|+|..+ .|+++|+
T Consensus 571 -------------------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LL 631 (915)
T PTZ00111 571 -------------------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631 (915)
T ss_pred -------------------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHh
Confidence 33456667777432 111224577899999752 4678999
Q ss_pred CCCceeeE-EEeCCCCHHHHHHHHHHHh
Q 012016 378 RPGRMDVH-VHMSYCTPSGFKLLAANYL 404 (473)
Q Consensus 378 rpgRfd~~-I~~~~p~~~~r~~l~~~~l 404 (473)
. |||.. +-++.|+.+.=..|+.+.+
T Consensus 632 S--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 632 T--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred h--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 9 99865 5667788877666666554
No 229
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.54 E-value=7.9e-07 Score=97.09 Aligned_cols=50 Identities=34% Similarity=0.448 Sum_probs=38.7
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCc
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD 280 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~ 280 (473)
.-+++++|+++.++.+...+. . +++++|+||||||||++++++|+.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~----~-----------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK----Q-----------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH----c-----------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 467888998877765543332 1 2489999999999999999999999644
No 230
>PHA02624 large T antigen; Provisional
Probab=98.47 E-value=6.2e-07 Score=95.56 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=81.2
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHHHhccCceEEEeccccccccccCCccccC
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIA 328 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~ 328 (473)
|+|.++.++||||||||||+++.+|++.|+-.+..++.+. +.++-.+.-+....+.+|||+-.-.-. ....
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~~~----~~~L- 497 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPAD----NKDL- 497 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeeccccccc----cccC-
Confidence 6777889999999999999999999999966666665332 345555666677889999999632110 0000
Q ss_pred CCCCCCccchhHHHHHHHHHhcccccCC-----CCc-----eEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 012016 329 GEGEGPIQQNKVTLSGFLNFIDGLWSSC-----GDE-----RIIVFTTNHKEKLDPALLRPGRMDVHVHMSY 390 (473)
Q Consensus 329 ~~~~~~~~~~~~~ls~LL~~ldg~~~~~-----~~~-----~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~ 390 (473)
..+..-..+..|-|.+||-..-+ ... --.|.|||. ..|+..+.- ||-.++.|..
T Consensus 498 -----p~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 498 -----PSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred -----CcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 00111223456778888861100 001 135678886 456777777 8988888864
No 231
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.46 E-value=3.7e-07 Score=93.39 Aligned_cols=100 Identities=24% Similarity=0.382 Sum_probs=64.0
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhcCC------ceEE--cc----ccccc-CchHHHHHHHHhccCc-eEEEeccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------DVYD--LE----LTELR-SNSDLRTLLVATANRS-ILVVEDID 314 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------~~~~--l~----~~~~~-~~~~l~~l~~~~~~~s-IL~iDdiD 314 (473)
..+.++|++||||+|+|||+|+-...+.+.. ++.. .+ +..+. ....+..+.....+.+ +|+|||+.
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQ 137 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeee
Confidence 3457899999999999999999999988843 1111 11 01111 2234444555555554 99999997
Q ss_pred cccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCC-CCC
Q 012016 315 CTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHK-EKL 372 (473)
Q Consensus 315 ~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~-~~l 372 (473)
.- +-.....+..|++.+= . .++++|+|+|++ +.|
T Consensus 138 V~------------------DiaDAmil~rLf~~l~---~---~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 138 VT------------------DIADAMILKRLFEALF---K---RGVVLVATSNRPPEDL 172 (362)
T ss_pred cc------------------chhHHHHHHHHHHHHH---H---CCCEEEecCCCChHHH
Confidence 43 2223556677776552 2 458999999974 443
No 232
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.7e-06 Score=84.04 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=48.8
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhh-cCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccc
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTE 288 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~-g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~ 288 (473)
-++|+++.|+.+--.+.+-.++...-..+ .--.|+++|..||.|+|||.+|+-||+..+.||+.+..+.
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATK 85 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATK 85 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeee
Confidence 36788888888765555443332211111 1123789999999999999999999999998888766544
No 233
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.45 E-value=6.4e-07 Score=91.84 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=103.6
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHh----cCCceEEcccccccC
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY----LNFDVYDLELTELRS 291 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~----l~~~~~~l~~~~~~~ 291 (473)
..+++|+|....-+++++.+..+- +-...+|++|++||||+.+|++|... .+.|++.+||..+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~a-----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYA-----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhC-----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 468899999888888888777521 12346999999999999999998854 367999999999976
Q ss_pred chHHHHHHHHh-----------------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc--
Q 012016 292 NSDLRTLLVAT-----------------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL-- 352 (473)
Q Consensus 292 ~~~l~~l~~~~-----------------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-- 352 (473)
+-...++|-.. .+...||+|||..+.. .....|+.+||.-
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~---------------------~~Q~kLl~~le~g~~ 202 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP---------------------EGQEKLLRVLEEGEY 202 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH---------------------hHHHHHHHHHHcCce
Confidence 65555554321 2568999999998843 2334566666641
Q ss_pred ---cc--CCCCceEEEEecCC-C-CCCCc--cccCCCceeeEEEeCCCCH--HHHHHHHHHHhCc
Q 012016 353 ---WS--SCGDERIIVFTTNH-K-EKLDP--ALLRPGRMDVHVHMSYCTP--SGFKLLAANYLGI 406 (473)
Q Consensus 353 ---~~--~~~~~~iiI~tTN~-~-~~ld~--aLlrpgRfd~~I~~~~p~~--~~r~~l~~~~l~~ 406 (473)
-+ .....+-+|++||- + +.+-. .|.+ -|+...|++|.... +++..|+..|+..
T Consensus 203 ~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~ 266 (403)
T COG1221 203 RRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLAEHFLKS 266 (403)
T ss_pred EecCCCCCcCCCceeeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHHHHHHHH
Confidence 11 11234667776663 2 22222 4443 16666777666433 3355677777653
No 234
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=8.1e-06 Score=90.92 Aligned_cols=122 Identities=23% Similarity=0.354 Sum_probs=80.3
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCC-CCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc-----
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR----- 290 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~-~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~----- 290 (473)
.|+|+++....|-+.+..... .++.+ +.-.+||.||.|+|||-||+|+|.++ .-.++.+|+++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 467777777776666554332 12222 45579999999999999999999998 4568888888621
Q ss_pred --------CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc--cCCC-
Q 012016 291 --------SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW--SSCG- 357 (473)
Q Consensus 291 --------~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~--~~~~- 357 (473)
+....-.+..... ..+||+|||||.. ....++.|+..+|.-. ...|
T Consensus 637 igsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA---------------------h~~v~n~llq~lD~GrltDs~Gr 695 (898)
T KOG1051|consen 637 IGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA---------------------HPDVLNILLQLLDRGRLTDSHGR 695 (898)
T ss_pred cCCCcccccchhHHHHHHHHhcCCceEEEEechhhc---------------------CHHHHHHHHHHHhcCccccCCCc
Confidence 1122333333333 3499999999964 2446677777776421 1222
Q ss_pred ----CceEEEEecCC
Q 012016 358 ----DERIIVFTTNH 368 (473)
Q Consensus 358 ----~~~iiI~tTN~ 368 (473)
.+.|||+|+|.
T Consensus 696 ~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 696 EVDFKNAIFIMTSNV 710 (898)
T ss_pred EeeccceEEEEeccc
Confidence 35799999885
No 235
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.41 E-value=9.4e-06 Score=87.01 Aligned_cols=170 Identities=15% Similarity=0.232 Sum_probs=104.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc----------CCceEEcccccccCchHH----------------------HHHHH-
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLELTELRSNSDL----------------------RTLLV- 300 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~l~~~~~~~~~~l----------------------~~l~~- 300 (473)
..+++.|-||||||.++..+-+.| .++++.++...+.+...+ ..-|.
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 368999999999999999999976 477778887766432222 22222
Q ss_pred --HhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccC
Q 012016 301 --ATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLR 378 (473)
Q Consensus 301 --~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlr 378 (473)
....++||+|||+|.|.. ..+ .-|-|+.|.... .+...+||+..|+.+ |+..++-
T Consensus 503 ~k~~~~~~VvLiDElD~Lvt------------------r~Q---dVlYn~fdWpt~-~~sKLvvi~IaNTmd-lPEr~l~ 559 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVT------------------RSQ---DVLYNIFDWPTL-KNSKLVVIAIANTMD-LPERLLM 559 (767)
T ss_pred CCCCCCCEEEEeccHHHHhc------------------ccH---HHHHHHhcCCcC-CCCceEEEEeccccc-CHHHHhc
Confidence 112468999999999863 112 335566664332 234566666666543 3333331
Q ss_pred ---CCcee-eEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 012016 379 ---PGRMD-VHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTTQVTPAEVAEQLMRNDDPELVLNGLIEFLKVKR 454 (473)
Q Consensus 379 ---pgRfd-~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~t~a~i~~~l~~~~~~~~al~~l~~~l~~~~ 454 (473)
..|++ ..|.|...+.+|..+|+...|....+. ..++.+|+.. ....-+||+..|++-...+.+.+.
T Consensus 560 nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f-~~~aielvar---------kVAavSGDaRraldic~RA~Eia~ 629 (767)
T KOG1514|consen 560 NRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAF-ENKAIELVAR---------KVAAVSGDARRALDICRRAAEIAE 629 (767)
T ss_pred cchhhhccceeeecCCCCHHHHHHHHHHhhcchhhc-chhHHHHHHH---------HHHhccccHHHHHHHHHHHHHHhh
Confidence 12554 568899999999999999887655332 2233333321 122235777777777666666554
Q ss_pred hc
Q 012016 455 KE 456 (473)
Q Consensus 455 ~~ 456 (473)
..
T Consensus 630 ~~ 631 (767)
T KOG1514|consen 630 ER 631 (767)
T ss_pred hh
Confidence 43
No 236
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.40 E-value=1e-06 Score=76.48 Aligned_cols=38 Identities=37% Similarity=0.597 Sum_probs=29.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc--------CCceEEccccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL--------NFDVYDLELTELR 290 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l--------~~~~~~l~~~~~~ 290 (473)
.+.++++||||+|||++++.+++.+ +.+++.+++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 4579999999999999999999988 7788887776653
No 237
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.7e-07 Score=95.27 Aligned_cols=48 Identities=27% Similarity=0.462 Sum_probs=39.7
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
...|.||.|++..|+.+.-... -.+++|++||||||||++++-|..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 4689999999999988743222 25689999999999999999998877
No 238
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.36 E-value=2.2e-06 Score=89.68 Aligned_cols=157 Identities=19% Similarity=0.224 Sum_probs=101.7
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccc
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTEL 289 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~ 289 (473)
..+.+|++|+|......++++.+..+-. -.-.+||.|.+||||..+|++|.+.. +-||+.+||..+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~-----------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAK-----------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcC-----------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 3446899999998887777776654433 24589999999999999999999977 679999999987
Q ss_pred cCchHHHHHH-------------------HHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhc
Q 012016 290 RSNSDLRTLL-------------------VATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFID 350 (473)
Q Consensus 290 ~~~~~l~~l~-------------------~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ld 350 (473)
- +.-|...| ...++.+-||+|||..+ .......||..+.
T Consensus 308 P-e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem---------------------pl~LQaKLLRVLQ 365 (560)
T COG3829 308 P-ETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM---------------------PLPLQAKLLRVLQ 365 (560)
T ss_pred C-HHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC---------------------CHHHHHHHHHHHh
Confidence 2 22222222 12235689999999876 2456667777764
Q ss_pred c--cccCC-----CCceEEEEecCCC-------CCCCccccCCCceeeEEEeCCCCHHHH----HHHHHHHhC
Q 012016 351 G--LWSSC-----GDERIIVFTTNHK-------EKLDPALLRPGRMDVHVHMSYCTPSGF----KLLAANYLG 405 (473)
Q Consensus 351 g--~~~~~-----~~~~iiI~tTN~~-------~~ld~aLlrpgRfd~~I~~~~p~~~~r----~~l~~~~l~ 405 (473)
. ++.-+ .-.+-||++||.. ..+-..|.- |+. ++.+..|.-.+| ..|+..|+.
T Consensus 366 Ekei~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~ 435 (560)
T COG3829 366 EKEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLD 435 (560)
T ss_pred hceEEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHH
Confidence 2 11111 1246789999974 223333443 444 345555555444 455555554
No 239
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.36 E-value=3.3e-06 Score=89.79 Aligned_cols=154 Identities=17% Similarity=0.223 Sum_probs=94.9
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCch
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNS 293 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~ 293 (473)
.+.+++|.....+.+.+.+..... ....+|+.|++||||+++|+++.... +.+++.++|..+. ..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~-~~ 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR-----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIP-KD 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc-----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCC-HH
Confidence 355677776666666555543322 23579999999999999999999986 4799999998873 23
Q ss_pred HHHHHHHH------------------hccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc--
Q 012016 294 DLRTLLVA------------------TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW-- 353 (473)
Q Consensus 294 ~l~~l~~~------------------~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-- 353 (473)
.+...+.. ...++.|||||||.+. ......|+.+++.-.
T Consensus 204 ~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~---------------------~~~q~~L~~~l~~~~~~ 262 (469)
T PRK10923 204 LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP---------------------LDVQTRLLRVLADGQFY 262 (469)
T ss_pred HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC---------------------HHHHHHHHHHHhcCcEE
Confidence 33333311 2346789999999883 233455666665321
Q ss_pred cCCC-----CceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHHhC
Q 012016 354 SSCG-----DERIIVFTTNHK-------EKLDPALLRPGRM-DVHVHMSYCTP--SGFKLLAANYLG 405 (473)
Q Consensus 354 ~~~~-----~~~iiI~tTN~~-------~~ld~aLlrpgRf-d~~I~~~~p~~--~~r~~l~~~~l~ 405 (473)
...+ -++-||+||+.. ..+.+.|.. |+ ...|++|.... +....|+..|+.
T Consensus 263 ~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~ 327 (469)
T PRK10923 263 RVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQ 327 (469)
T ss_pred eCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHH
Confidence 1011 124567777643 245566666 66 35566655432 345567777764
No 240
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.36 E-value=2.9e-06 Score=89.56 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=90.4
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCch
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNS 293 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~ 293 (473)
.+..+++.....+.+...+..... ....++|+|++||||+++|+++.... +.+++.++|..+.. .
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~ 204 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP-----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-N 204 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-H
Confidence 345566665555555554443221 23579999999999999999998876 46899999998732 3
Q ss_pred HHHHHHHH------------------hccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc-c
Q 012016 294 DLRTLLVA------------------TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW-S 354 (473)
Q Consensus 294 ~l~~l~~~------------------~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~ 354 (473)
.+...+.. ...++.|||||||.+. ......|+..++.-. .
T Consensus 205 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~---------------------~~~q~~l~~~l~~~~~~ 263 (445)
T TIGR02915 205 LLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP---------------------LNLQAKLLRFLQERVIE 263 (445)
T ss_pred HHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC---------------------HHHHHHHHHHHhhCeEE
Confidence 33333211 1356899999999883 234455666664321 0
Q ss_pred C-C-----CCceEEEEecCCC-------CCCCccccCCCceeeEEEeCCCCHHHHH----HHHHHHhC
Q 012016 355 S-C-----GDERIIVFTTNHK-------EKLDPALLRPGRMDVHVHMSYCTPSGFK----LLAANYLG 405 (473)
Q Consensus 355 ~-~-----~~~~iiI~tTN~~-------~~ld~aLlrpgRfd~~I~~~~p~~~~r~----~l~~~~l~ 405 (473)
. . ..++-+|+||+.. ..+.+.|.. |+. .+.+..|.-.+|. .|+..|+.
T Consensus 264 ~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~ 328 (445)
T TIGR02915 264 RLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLE 328 (445)
T ss_pred eCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHH
Confidence 0 0 1135667777654 234444543 443 2444455555543 45665554
No 241
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.35 E-value=1.3e-05 Score=83.82 Aligned_cols=208 Identities=21% Similarity=0.307 Sum_probs=113.4
Q ss_pred CcceeccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 205 DAWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 205 ~~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
..|.. ...|.+.++|+-+.....++.+.+..+.... .....+-+||+||+|||||+.++.||.++|+.+..-
T Consensus 70 elW~e--Ky~P~t~eeLAVHkkKI~eVk~WL~~~~~~~------~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 70 ELWVE--KYKPRTLEELAVHKKKISEVKQWLKQVAEFT------PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred chhHH--hcCcccHHHHhhhHHhHHHHHHHHHHHHHhc------cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 45643 5668999999998877777766665222111 122346789999999999999999999999988764
Q ss_pred c-------cccccCc---------hHHHH---HHHHh--------------ccCceEEEeccccccccccCCccccCCCC
Q 012016 285 E-------LTELRSN---------SDLRT---LLVAT--------------ANRSILVVEDIDCTIDLQDRLPADIAGEG 331 (473)
Q Consensus 285 ~-------~~~~~~~---------~~l~~---l~~~~--------------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~ 331 (473)
. ...+.+. +.|.. .+..+ ..+.+|+|||+=..+.
T Consensus 142 ~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~------------- 208 (634)
T KOG1970|consen 142 SNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFY------------- 208 (634)
T ss_pred cCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhh-------------
Confidence 3 1111111 11211 11111 1346899999976643
Q ss_pred CCCccchhHHHHHHHHHhcccccCCCCceEEEEecCC--CCCCCccccCC------CceeeEEEeCCCCHHHHHHHHHHH
Q 012016 332 EGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNH--KEKLDPALLRP------GRMDVHVHMSYCTPSGFKLLAANY 403 (473)
Q Consensus 332 ~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~--~~~ld~aLlrp------gRfd~~I~~~~p~~~~r~~l~~~~ 403 (473)
......+...|...-. . |.--+||+.|+. ++..++..+.| .|++ +|.|.+-...-.++.+.++
T Consensus 209 ----~d~~~~f~evL~~y~s---~-g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ri 279 (634)
T KOG1970|consen 209 ----RDDSETFREVLRLYVS---I-GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRI 279 (634)
T ss_pred ----hhhHHHHHHHHHHHHh---c-CCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHH
Confidence 1123334444432211 1 111244444433 24444433322 2553 6788877777777777666
Q ss_pred hCccccCCHHHHHHHHhcCCCCHHHHHHHHhc-CCCHHHHHHHHHHH
Q 012016 404 LGIKEHILFEEIEELISTTQVTPAEVAEQLMR-NDDPELVLNGLIEF 449 (473)
Q Consensus 404 l~~~~~~l~~~i~~l~~~~~~t~a~i~~~l~~-~~~~~~al~~l~~~ 449 (473)
+......+.+ +. --.-++|-.+|.. .||.+.|+..|.=+
T Consensus 280 c~~e~~~~s~-~k------~~~~~~v~~i~~~s~GDIRsAInsLQls 319 (634)
T KOG1970|consen 280 CRIEANKKSG-IK------VPDTAEVELICQGSGGDIRSAINSLQLS 319 (634)
T ss_pred HHHhcccccC-Cc------CchhHHHHHHHHhcCccHHHHHhHhhhh
Confidence 6544322221 00 0012333334432 46888888877755
No 242
>PF05729 NACHT: NACHT domain
Probab=98.33 E-value=4.3e-06 Score=75.11 Aligned_cols=133 Identities=19% Similarity=0.309 Sum_probs=71.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC--------Cc-eEEcccccccCc---hHHHHHH------------------HHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN--------FD-VYDLELTELRSN---SDLRTLL------------------VATA 303 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~--------~~-~~~l~~~~~~~~---~~l~~l~------------------~~~~ 303 (473)
|-++|+|+||+|||++++.++..+. .+ ++.+.+.+.... ..+.+.+ ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 3579999999999999999998771 11 223333333211 1222222 1223
Q ss_pred cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCC-CCCccccCCCce
Q 012016 304 NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKE-KLDPALLRPGRM 382 (473)
Q Consensus 304 ~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~-~ld~aLlrpgRf 382 (473)
.+.+|+||.+|.+..... ..........|.+.+... ..+.-.++|.+..... .+...+-.
T Consensus 81 ~~~llilDglDE~~~~~~-------------~~~~~~~~~~l~~l~~~~--~~~~~~liit~r~~~~~~~~~~~~~---- 141 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQ-------------SQERQRLLDLLSQLLPQA--LPPGVKLIITSRPRAFPDLRRRLKQ---- 141 (166)
T ss_pred CceEEEEechHhcccchh-------------hhHHHHHHHHHHHHhhhc--cCCCCeEEEEEcCChHHHHHHhcCC----
Confidence 568999999998853100 000111222222333321 1112233333332221 22222222
Q ss_pred eeEEEeCCCCHHHHHHHHHHHhC
Q 012016 383 DVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 383 d~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
...+++...+.++..++++.|+.
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 142 AQILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred CcEEEECCCCHHHHHHHHHHHhh
Confidence 15689999999999999999875
No 243
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.32 E-value=3.7e-06 Score=88.98 Aligned_cols=152 Identities=20% Similarity=0.240 Sum_probs=89.4
Q ss_pred ccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCchH
Q 012016 218 FETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNSD 294 (473)
Q Consensus 218 f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~ 294 (473)
+..+++.......+.+.+..... ....+|++|++||||+++++++.... +.+++.++|..+.. ..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~ 209 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIAL-----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SL 209 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcC-----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HH
Confidence 34456655555555555443332 13479999999999999999998765 57999999998742 23
Q ss_pred HHHHHHH------------------hccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc-cC
Q 012016 295 LRTLLVA------------------TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW-SS 355 (473)
Q Consensus 295 l~~l~~~------------------~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~ 355 (473)
+...+.. ...+++|||||||.+. ......|++.++.-. ..
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~---------------------~~~q~~L~~~l~~~~~~~ 268 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMP---------------------LVLQAKLLRILQEREFER 268 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCC---------------------HHHHHHHHHHHhcCcEEe
Confidence 3322211 1346799999999883 234556666665321 00
Q ss_pred -CC-----CceEEEEecCCC-------CCCCccccCCCceeeEEEeCCCCHHHH----HHHHHHHhC
Q 012016 356 -CG-----DERIIVFTTNHK-------EKLDPALLRPGRMDVHVHMSYCTPSGF----KLLAANYLG 405 (473)
Q Consensus 356 -~~-----~~~iiI~tTN~~-------~~ld~aLlrpgRfd~~I~~~~p~~~~r----~~l~~~~l~ 405 (473)
.+ .++-||+|||.. ..+.+.|.. |+. .+.+..|.-.+| ..|+..|+.
T Consensus 269 ~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~ 332 (457)
T PRK11361 269 IGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQ 332 (457)
T ss_pred CCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHH
Confidence 01 135677888753 123333433 332 345555555554 345555554
No 244
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=9e-06 Score=83.58 Aligned_cols=159 Identities=16% Similarity=0.098 Sum_probs=101.0
Q ss_pred ccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEcccccccCc
Q 012016 218 FETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELTELRSN 292 (473)
Q Consensus 218 f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~~~~~~~~ 292 (473)
-+++.|.+.....+.+.+...+.... +..+++.|-||||||.+..-+-..+ ....++++|.++...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t---------~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~ 219 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNT---------SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEA 219 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhccc---------CcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccch
Confidence 35677777666666555554444322 5689999999999999888665554 335578888876322
Q ss_pred hH---------------------HHHHHHH----hccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHH
Q 012016 293 SD---------------------LRTLLVA----TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLN 347 (473)
Q Consensus 293 ~~---------------------l~~l~~~----~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~ 347 (473)
.. ..+.|.. ....-++|+||+|.++. | .+.++-
T Consensus 220 ~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t---r---------------~~~vLy---- 277 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT---R---------------SQTVLY---- 277 (529)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh---c---------------ccceee----
Confidence 11 1122221 12357999999999963 1 112222
Q ss_pred HhcccccCCCCceEEEEecCCCCCCCcccc----CCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 348 FIDGLWSSCGDERIIVFTTNHKEKLDPALL----RPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 348 ~ldg~~~~~~~~~iiI~tTN~~~~ld~aLl----rpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
.+..+..-++..+|+|+..|..+.-|..|- |-+--...+.|++++.++..+|+...+...
T Consensus 278 ~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 278 TLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred eehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 222222234456888999998765554442 233445678999999999999999888655
No 245
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.30 E-value=5.1e-06 Score=88.14 Aligned_cols=152 Identities=18% Similarity=0.233 Sum_probs=94.0
Q ss_pred cccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCchHH
Q 012016 219 ETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNSDL 295 (473)
Q Consensus 219 ~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l 295 (473)
..+++......++...+..... ....+++.|.+||||+++++++.... +.+++.++|..+. ...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~-----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~-~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR-----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIP-KDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC-----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCC-HHHH
Confidence 3466666666666665544221 13479999999999999999998875 5689999998873 2333
Q ss_pred HHHHHH------------------hccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc-cC-
Q 012016 296 RTLLVA------------------TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW-SS- 355 (473)
Q Consensus 296 ~~l~~~------------------~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~- 355 (473)
...+.. ...++.|||||||.+. ......|++.++.-. ..
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~---------------------~~~q~~ll~~l~~~~~~~~ 260 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMP---------------------LDAQTRLLRVLADGEFYRV 260 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCC---------------------HHHHHHHHHHHhcCcEEEC
Confidence 333211 2246889999999883 233455666664311 00
Q ss_pred C-----CCceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCC--HHHHHHHHHHHhC
Q 012016 356 C-----GDERIIVFTTNHK-------EKLDPALLRPGRMD-VHVHMSYCT--PSGFKLLAANYLG 405 (473)
Q Consensus 356 ~-----~~~~iiI~tTN~~-------~~ld~aLlrpgRfd-~~I~~~~p~--~~~r~~l~~~~l~ 405 (473)
. ..++-||+||+.. ..+.+.|.. |+. .+|++|... .+....|+..|+.
T Consensus 261 ~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~ 323 (463)
T TIGR01818 261 GGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLA 323 (463)
T ss_pred CCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHH
Confidence 0 1134566666643 233444544 554 477777766 5667777777764
No 246
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.28 E-value=7e-06 Score=87.54 Aligned_cols=161 Identities=22% Similarity=0.294 Sum_probs=95.9
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhc-CCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccc--c------c
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTE--L------R 290 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g-~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~--~------~ 290 (473)
+|.+.+++|+.++-.| |=.....+.+.| ..-.-++||+|.||||||.|.+.+++.+..-+|.---.+ + .
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 4667778888775433 322223333333 112246999999999999999999999866555322111 0 0
Q ss_pred CchHHHHHHHH-----hccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhc---------ccccCC
Q 012016 291 SNSDLRTLLVA-----TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFID---------GLWSSC 356 (473)
Q Consensus 291 ~~~~l~~l~~~-----~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ld---------g~~~~~ 356 (473)
.+.+-++++.+ ++..+|..|||+|.+-. .+-+.|+..|+ |+..+-
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d---------------------StrSvLhEvMEQQTvSIAKAGII~sL 566 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSD---------------------STRSVLHEVMEQQTLSIAKAGIIASL 566 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhH---------------------HHHHHHHHHHHHhhhhHhhcceeeec
Confidence 11122222222 24789999999998832 23344555543 333333
Q ss_pred CCceEEEEecCCCC-------------CCCccccCCCceeeE-EEeCCCCHHHHHHHHHHHhC
Q 012016 357 GDERIIVFTTNHKE-------------KLDPALLRPGRMDVH-VHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 357 ~~~~iiI~tTN~~~-------------~ld~aLlrpgRfd~~-I~~~~p~~~~r~~l~~~~l~ 405 (473)
....-|+++.|..+ .|+|.|++ |||.+ +-+..|+...=+.|..+..+
T Consensus 567 NAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 567 NARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred cccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHH
Confidence 34556888888532 47899999 99964 34566766644555555443
No 247
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.26 E-value=9.4e-06 Score=87.98 Aligned_cols=119 Identities=20% Similarity=0.164 Sum_probs=85.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCC--ceEEccccc----ccCchHHHHHHH-----------HhccCceEEEeccccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELTE----LRSNSDLRTLLV-----------ATANRSILVVEDIDCT 316 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~--~~~~l~~~~----~~~~~~l~~l~~-----------~~~~~sIL~iDdiD~l 316 (473)
.|++|-|++|||||+++++++..+.. |+..+..+. +.+.-+|...+. ....+.||||||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 58999999999999999999999854 776655432 223333433332 2235689999999765
Q ss_pred cccccCCccccCCCCCCCccchhHHHHHHHHHhcc---------cccCCCCceEEEEecCCC---CCCCccccCCCceee
Q 012016 317 IDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDG---------LWSSCGDERIIVFTTNHK---EKLDPALLRPGRMDV 384 (473)
Q Consensus 317 ~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~~~~~~~~iiI~tTN~~---~~ld~aLlrpgRfd~ 384 (473)
...+++.|+..|+. .....+...++|+|-|.. +.|.++++. ||++
T Consensus 106 ---------------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l 162 (584)
T PRK13406 106 ---------------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAF 162 (584)
T ss_pred ---------------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEE
Confidence 36788999988853 222223456777774432 468999999 9999
Q ss_pred EEEeCCCCHHH
Q 012016 385 HVHMSYCTPSG 395 (473)
Q Consensus 385 ~I~~~~p~~~~ 395 (473)
+|.+++|+..+
T Consensus 163 ~v~v~~~~~~~ 173 (584)
T PRK13406 163 HLDLDGLALRD 173 (584)
T ss_pred EEEcCCCChHH
Confidence 99999998765
No 248
>PHA02774 E1; Provisional
Probab=98.22 E-value=1.1e-05 Score=86.02 Aligned_cols=58 Identities=28% Similarity=0.460 Sum_probs=43.3
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEE-cccccccCchHHHHHHHHhccCceEEEecc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD-LELTELRSNSDLRTLLVATANRSILVVEDI 313 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~-l~~~~~~~~~~l~~l~~~~~~~sIL~iDdi 313 (473)
|.|.+++++||||||||||+++.+|++.++..++. ++..+ .-.+..+....|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s-------~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS-------HFWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc-------ccccchhccCCEEEEecC
Confidence 45556799999999999999999999999755543 54321 112444556779999999
No 249
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.20 E-value=6.9e-06 Score=91.99 Aligned_cols=182 Identities=21% Similarity=0.275 Sum_probs=113.2
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhc-hhHHhhhcCCC-Cc-eeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKR-KDYYRRVGKAW-KR-GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL 289 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~-~~~y~~~g~~~-~r-g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~ 289 (473)
..|.....+.+....-..+.+.+..+-+. +.-|...+... .. ..|++||||.|||+.+.+.|..+|+.++..|.+..
T Consensus 314 ~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~ 393 (871)
T KOG1968|consen 314 YQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDV 393 (871)
T ss_pred cccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccc
Confidence 44556677777766666666666554211 11122211111 11 36999999999999999999999999999999988
Q ss_pred cCchHHHHHHHHhc--------------------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHh
Q 012016 290 RSNSDLRTLLVATA--------------------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFI 349 (473)
Q Consensus 290 ~~~~~l~~l~~~~~--------------------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~l 349 (473)
.+...+.+.+..+. ...||++||+|.++. .+| ..-..++.+.+.
T Consensus 394 RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dR--------------g~v~~l~~l~~k- 457 (871)
T KOG1968|consen 394 RSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDR--------------GGVSKLSSLCKK- 457 (871)
T ss_pred ccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhh--------------hhHHHHHHHHHh-
Confidence 77666655443321 124999999998864 111 122334444431
Q ss_pred cccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcccc-CCHHHHHHHHh
Q 012016 350 DGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEH-ILFEEIEELIS 420 (473)
Q Consensus 350 dg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~-~l~~~i~~l~~ 420 (473)
..+-+|+|+|.........+. |-+.-|+|+.|+.+++..-+..++..+.. .....++.++.
T Consensus 458 --------s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~ 519 (871)
T KOG1968|consen 458 --------SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISK 519 (871)
T ss_pred --------ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHH
Confidence 236688888877665553333 44467999999999977666665554422 22344444443
No 250
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.20 E-value=1.8e-05 Score=78.11 Aligned_cols=178 Identities=15% Similarity=0.234 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---------CCceEEcccccccCchHHHH-H
Q 012016 229 TKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELTELRSNSDLRT-L 298 (473)
Q Consensus 229 ~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---------~~~~~~l~~~~~~~~~~l~~-l 298 (473)
+++++.+...+..+. ..-..++||+|++|.|||++++..+... ..|++.++....-+...+-. +
T Consensus 43 ~~~L~~L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 43 KEALDRLEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 345566666555443 1223589999999999999999999755 35677766554423222211 1
Q ss_pred HH-----------------------HhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccC
Q 012016 299 LV-----------------------ATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSS 355 (473)
Q Consensus 299 ~~-----------------------~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~ 355 (473)
+. ..-+.-+|+|||++.++. |.....+. +||.+..+...
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------------Gs~~~qr~----~Ln~LK~L~Ne 178 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------------GSYRKQRE----FLNALKFLGNE 178 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------------ccHHHHHH----HHHHHHHHhhc
Confidence 11 122557999999999864 11222222 33333333222
Q ss_pred CCCceEEEEecCCCC--CCCccccCCCceeeEEEeCC-CCHHHHHHHHHHHhCc-----cccCCHHHH-HHHHhcCCCCH
Q 012016 356 CGDERIIVFTTNHKE--KLDPALLRPGRMDVHVHMSY-CTPSGFKLLAANYLGI-----KEHILFEEI-EELISTTQVTP 426 (473)
Q Consensus 356 ~~~~~iiI~tTN~~~--~ld~aLlrpgRfd~~I~~~~-p~~~~r~~l~~~~l~~-----~~~~l~~~i-~~l~~~~~~t~ 426 (473)
..-.++.|+|-.-.. .-|+-+-+ ||+. +.+|. -.-+++..|+..+-.. .+.....++ ..+....+-+.
T Consensus 179 L~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 179 LQIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred cCCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 222244444443222 23677777 9974 45555 2334456666655432 122222333 34445555555
Q ss_pred HHHHHHH
Q 012016 427 AEVAEQL 433 (473)
Q Consensus 427 a~i~~~l 433 (473)
+++..++
T Consensus 256 G~l~~ll 262 (302)
T PF05621_consen 256 GELSRLL 262 (302)
T ss_pred HHHHHHH
Confidence 6665554
No 251
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.18 E-value=4.6e-05 Score=89.75 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=88.4
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCce---EEccc
Q 012016 210 VNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV---YDLEL 286 (473)
Q Consensus 210 ~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~---~~l~~ 286 (473)
....++..+++++|.++..+++...+. .+....+-+-|+||+|+|||+||+++++.+...+ +.++.
T Consensus 175 l~~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 175 LNLTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred hccccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 344455678899998877777655442 1122356789999999999999999998874321 11111
Q ss_pred ccc-------c-----C-c--hHH-----HHHHH--------------H-hccCceEEEeccccccccccCCccccCCCC
Q 012016 287 TEL-------R-----S-N--SDL-----RTLLV--------------A-TANRSILVVEDIDCTIDLQDRLPADIAGEG 331 (473)
Q Consensus 287 ~~~-------~-----~-~--~~l-----~~l~~--------------~-~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~ 331 (473)
..+ . . + ..+ .+++. . ..++.+|||||+|..
T Consensus 244 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------- 308 (1153)
T PLN03210 244 AFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------- 308 (1153)
T ss_pred cccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH---------------
Confidence 000 0 0 0 001 11110 0 124678999998742
Q ss_pred CCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 332 EGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 332 ~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
..+..|....+ |. +.+.-||+||... .+++....+..++++.|+.++-.+|+..+...
T Consensus 309 --------~~l~~L~~~~~--~~--~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 309 --------DVLDALAGQTQ--WF--GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred --------HHHHHHHhhCc--cC--CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 12233332222 11 1223455566643 33333346778999999999999999887643
No 252
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.17 E-value=4.3e-05 Score=75.48 Aligned_cols=144 Identities=22% Similarity=0.214 Sum_probs=75.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHh--c--CCc-eEEcccccccCc------------------------hHHHHHHHHh-
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANY--L--NFD-VYDLELTELRSN------------------------SDLRTLLVAT- 302 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~--l--~~~-~~~l~~~~~~~~------------------------~~l~~l~~~~- 302 (473)
.+-+.|+|++|+|||+||..+++. . .++ ++.++++...+. ..+...+...
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 567999999999999999999987 3 232 223333322111 1111222211
Q ss_pred -ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCc
Q 012016 303 -ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGR 381 (473)
Q Consensus 303 -~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR 381 (473)
..+++|||||++... .+..+...+... ..+.-||+||....... .+- .
T Consensus 99 ~~~~~LlVlDdv~~~~-----------------------~~~~l~~~~~~~----~~~~kilvTTR~~~v~~-~~~---~ 147 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEE-----------------------DLEELREPLPSF----SSGSKILVTTRDRSVAG-SLG---G 147 (287)
T ss_dssp CCTSEEEEEEEE-SHH-----------------------HH-------HCH----HSS-EEEEEESCGGGGT-THH---S
T ss_pred ccccceeeeeeecccc-----------------------cccccccccccc----ccccccccccccccccc-ccc---c
Confidence 248999999997531 222222222111 11245566776533211 111 1
Q ss_pred eeeEEEeCCCCHHHHHHHHHHHhCccc----cCCHHHHHHHHhcCCCCHH
Q 012016 382 MDVHVHMSYCTPSGFKLLAANYLGIKE----HILFEEIEELISTTQVTPA 427 (473)
Q Consensus 382 fd~~I~~~~p~~~~r~~l~~~~l~~~~----~~l~~~i~~l~~~~~~t~a 427 (473)
-+..++++..+.++-.+|+..+..... ..+.+...++++..+..|-
T Consensus 148 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 197 (287)
T PF00931_consen 148 TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPL 197 (287)
T ss_dssp CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 157899999999999999999876543 2223344455555555554
No 253
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.16 E-value=1.3e-05 Score=87.49 Aligned_cols=50 Identities=28% Similarity=0.422 Sum_probs=40.0
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
+|..|++++|+++.++.+...+. . ++.++|+||||||||+++++++..+.
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~----~-----------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAK----Q-----------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHH----h-----------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 46789999998888776544332 1 24799999999999999999999874
No 254
>PHA00729 NTP-binding motif containing protein
Probab=98.14 E-value=2.9e-06 Score=80.75 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=38.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc----------cCchHHHHHHHHh----ccCceEEEecccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL----------RSNSDLRTLLVAT----ANRSILVVEDIDC 315 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~----------~~~~~l~~l~~~~----~~~sIL~iDdiD~ 315 (473)
..++|+||||||||+||.+||+.++..+..+..... .+...+.+.+..+ .+..+|+|||+..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~ 93 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGI 93 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCch
Confidence 379999999999999999999998643333211110 1222333333222 2336899999754
No 255
>PRK15115 response regulator GlrR; Provisional
Probab=98.13 E-value=1.3e-05 Score=84.65 Aligned_cols=64 Identities=23% Similarity=0.262 Sum_probs=48.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCchHHHHHHH------------------HhccCceEEEe
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNSDLRTLLV------------------ATANRSILVVE 311 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~~l~~------------------~~~~~sIL~iD 311 (473)
...++++|++||||+++|+++.+.. +.+++.++|..+. ...+...+. ....++.||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~-~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALP-EQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCC-HHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEE
Confidence 3469999999999999999998875 5799999999873 233332221 12346899999
Q ss_pred cccccc
Q 012016 312 DIDCTI 317 (473)
Q Consensus 312 diD~l~ 317 (473)
|||.+.
T Consensus 236 ~i~~l~ 241 (444)
T PRK15115 236 EIGDMP 241 (444)
T ss_pred ccccCC
Confidence 999883
No 256
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.06 E-value=2.9e-05 Score=81.21 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=99.3
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCch
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNS 293 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~ 293 (473)
.+..++|.....+++.+.+...-.. ...||++|++||||..+|++|...- +-||+.+||..+-. +
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s-----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~-~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPS-----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE-N 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH-H
Confidence 4667888887777777766544332 3579999999999999999999987 46999999998832 2
Q ss_pred HHHH-HHH-----------------HhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc-cc
Q 012016 294 DLRT-LLV-----------------ATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL-WS 354 (473)
Q Consensus 294 ~l~~-l~~-----------------~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-~~ 354 (473)
-+.. +|- ...+++.||||||..+. ......||..+..- ..
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mp---------------------l~~Q~kLLRvLqe~~~~ 265 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMP---------------------LELQVKLLRVLQEREFE 265 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCC---------------------HHHHHHHHHHHHcCeeE
Confidence 2322 332 12357899999998763 34556677666421 11
Q ss_pred CCC------CceEEEEecCCC-------CCCCccccCCCceeeEEEeCCCCHHHH----HHHHHHHhC
Q 012016 355 SCG------DERIIVFTTNHK-------EKLDPALLRPGRMDVHVHMSYCTPSGF----KLLAANYLG 405 (473)
Q Consensus 355 ~~~------~~~iiI~tTN~~-------~~ld~aLlrpgRfd~~I~~~~p~~~~r----~~l~~~~l~ 405 (473)
.-| -++-||++||.. ..+-+.|.- |+. ++.+..|.-.+| .-|+.+|+.
T Consensus 266 rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~ 330 (464)
T COG2204 266 RVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLK 330 (464)
T ss_pred ecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHH
Confidence 111 135588999874 223344444 554 456666655554 466666664
No 257
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.03 E-value=3.8e-06 Score=85.32 Aligned_cols=130 Identities=22% Similarity=0.229 Sum_probs=74.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccc----c---------cCchHHHHHHHHhccCceEEEeccccccccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTE----L---------RSNSDLRTLLVATANRSILVVEDIDCTIDLQ 320 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~----~---------~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~ 320 (473)
-++||.|.||||||.|.+.+++.....+|..-... + .++..+..-..-..+++|++|||+|.+-
T Consensus 58 ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~--- 134 (331)
T PF00493_consen 58 IHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMK--- 134 (331)
T ss_dssp --EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT-----
T ss_pred cceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeeccccccc---
Confidence 36999999999999999998877766655321111 1 1111111111224578999999999872
Q ss_pred cCCccccCCCCCCCccchhHHHHHHHHHhcccc---------cCCCCceEEEEecCCCC-------------CCCccccC
Q 012016 321 DRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW---------SSCGDERIIVFTTNHKE-------------KLDPALLR 378 (473)
Q Consensus 321 ~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~---------~~~~~~~iiI~tTN~~~-------------~ld~aLlr 378 (473)
......|+..|+... ..-+.+.-|++++|... .+++.|+.
T Consensus 135 ------------------~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS 196 (331)
T PF00493_consen 135 ------------------EDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS 196 (331)
T ss_dssp ------------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC
T ss_pred ------------------chHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh
Confidence 234566777776421 11123456888988765 47889999
Q ss_pred CCceeeEEEe-CCCCHHHHHHHHHHHhCc
Q 012016 379 PGRMDVHVHM-SYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 379 pgRfd~~I~~-~~p~~~~r~~l~~~~l~~ 406 (473)
|||..+.+ ..|+.+.=..|+.+.+..
T Consensus 197 --RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 197 --RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp --C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred --hcCEEEEeccccccccccccceEEEec
Confidence 99987665 557766666777766654
No 258
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.02 E-value=5.6e-05 Score=77.96 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=40.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc-CCceEEcccccccCchHHHHHHHHhccCceEEEeccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELTELRSNSDLRTLLVATANRSILVVEDIDCT 316 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l-~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l 316 (473)
..++++.||+|||||+++.+++.+. -..-.......+..+-. ...+.......+|+|||+..+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~-~~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIS-TRQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHH-HHHHhhhccCCEEEEEcCCCC
Confidence 3589999999999999999998872 11102223333221111 134445567899999999875
No 259
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=98.00 E-value=2.5e-05 Score=73.14 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=60.0
Q ss_pred eEEeCCCCCCHHHHHHHH-HHh-c--CCceEEccccccc-----C---------------------chHHHHHHHHhccC
Q 012016 256 YLLYGPPGTGKSSLIAAM-ANY-L--NFDVYDLELTELR-----S---------------------NSDLRTLLVATANR 305 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~al-A~~-l--~~~~~~l~~~~~~-----~---------------------~~~l~~l~~~~~~~ 305 (473)
++++|.||+|||+.|-.. ... + |.+++. +...+. . ...+ ......+.+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDP-DDWRKLPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGH-HHHTTSGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhh-hhhcccCCC
Confidence 689999999999977655 332 2 666654 333221 0 0111 112223368
Q ss_pred ceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeE
Q 012016 306 SILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVH 385 (473)
Q Consensus 306 sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~ 385 (473)
++|||||+...++.+.... ......++++... ...+.-||++|.++..+|+.+++ .++.+
T Consensus 81 ~liviDEa~~~~~~r~~~~---------------~~~~~~~~~l~~h---Rh~g~diiliTQ~~~~id~~ir~--lve~~ 140 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWKG---------------KKVPEIIEFLAQH---RHYGWDIILITQSPSQIDKFIRD--LVEYH 140 (193)
T ss_dssp -EEEETTGGGTSB---T-T-------------------HHHHGGGGC---CCTT-EEEEEES-GGGB-HHHHC--CEEEE
T ss_pred cEEEEECChhhcCCCcccc---------------ccchHHHHHHHHh---CcCCcEEEEEeCCHHHHhHHHHH--HHheE
Confidence 9999999999887332100 0112233443322 22457899999999999999987 88988
Q ss_pred EEeCCC
Q 012016 386 VHMSYC 391 (473)
Q Consensus 386 I~~~~p 391 (473)
+++..+
T Consensus 141 ~~~~k~ 146 (193)
T PF05707_consen 141 YHCRKL 146 (193)
T ss_dssp EEEEE-
T ss_pred EEEEee
Confidence 887654
No 260
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.98 E-value=4.3e-05 Score=68.10 Aligned_cols=31 Identities=29% Similarity=0.574 Sum_probs=25.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
++++||||+|||+++..++..+ +.+++.++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 6899999999999999999887 455555443
No 261
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.95 E-value=3.8e-05 Score=75.04 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=60.1
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-----ceEE-----cccccc
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-----DVYD-----LELTEL 289 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~-----~~~~-----l~~~~~ 289 (473)
.|.|+.-+++.|+..+..++.++. -..|--+=|||++||||++.++.||+.+-. +++. .++..-
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 577888999999999998887654 011335678999999999999999998722 2111 111111
Q ss_pred cCc----hHHHHHHHH---hccCceEEEecccccc
Q 012016 290 RSN----SDLRTLLVA---TANRSILVVEDIDCTI 317 (473)
Q Consensus 290 ~~~----~~l~~l~~~---~~~~sIL~iDdiD~l~ 317 (473)
... .+|+..+.. ...++|+++||+|.+-
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 111 222222222 2378999999999883
No 262
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.93 E-value=1.4e-05 Score=76.22 Aligned_cols=23 Identities=48% Similarity=0.846 Sum_probs=20.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHH
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~ 275 (473)
+..+||||+||+|||++|+.+++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 35699999999999999999974
No 263
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.93 E-value=6.8e-06 Score=70.36 Aligned_cols=31 Identities=39% Similarity=0.741 Sum_probs=28.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
|+|.||||+||||+++.||+.+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988876664
No 264
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.92 E-value=4.5e-05 Score=72.00 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=32.4
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTE 288 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~ 288 (473)
|.+...-++++||||||||+++..+|... +..++.++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 66777789999999999999999888644 66777777754
No 265
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.91 E-value=1.5e-05 Score=84.82 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=52.1
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-CCceEEccc
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLEL 286 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-~~~~~~l~~ 286 (473)
....-|+++.|.++.++.|++.+.....+-+ ..++-++|.||||+|||+|+++||+.+ .+++|.+..
T Consensus 70 ~ry~fF~d~yGlee~ieriv~~l~~Aa~gl~-------~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 70 KRYPAFEEFYGMEEAIEQIVSYFRHAAQGLE-------EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred ccccchhcccCcHHHHHHHHHHHHHHHHhcC-------CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3345689999999999999887765544321 234679999999999999999999988 467777654
No 266
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00022 Score=68.26 Aligned_cols=125 Identities=11% Similarity=0.110 Sum_probs=94.2
Q ss_pred CceeEEeCCCC-CCHHHHHHHHHHhc---------CCceEEcccc-------cccCchHHHHHHHHhc------cCceEE
Q 012016 253 KRGYLLYGPPG-TGKSSLIAAMANYL---------NFDVYDLELT-------ELRSNSDLRTLLVATA------NRSILV 309 (473)
Q Consensus 253 ~rg~LL~GPpG-tGKT~la~alA~~l---------~~~~~~l~~~-------~~~~~~~l~~l~~~~~------~~sIL~ 309 (473)
...|||.|..+ +||..++.-++..+ +-+++.+... ...+...+|++..... ..-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 46899999998 99999988887766 2455555432 1234456666655442 457999
Q ss_pred EeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeC
Q 012016 310 VEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMS 389 (473)
Q Consensus 310 iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~ 389 (473)
|+++|.+ .....+.||..++. ++.+.++|++|..++.+.|.++. |+ .++.|+
T Consensus 95 I~~ae~m---------------------t~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~ 146 (263)
T PRK06581 95 IYSAELM---------------------NLNAANSCLKILED----APKNSYIFLITSRAASIISTIRS--RC-FKINVR 146 (263)
T ss_pred EechHHh---------------------CHHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCC
Confidence 9999988 34677899999885 45678999999999999999998 87 578999
Q ss_pred CCCHHHHHHHHHHHhC
Q 012016 390 YCTPSGFKLLAANYLG 405 (473)
Q Consensus 390 ~p~~~~r~~l~~~~l~ 405 (473)
.|....-.++...++.
T Consensus 147 ~p~~~~~~e~~~~~~~ 162 (263)
T PRK06581 147 SSILHAYNELYSQFIQ 162 (263)
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999777766665554
No 267
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.88 E-value=8.9e-05 Score=85.36 Aligned_cols=129 Identities=22% Similarity=0.329 Sum_probs=92.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC-------c------hHH----HHHHHHhccCceEEEecccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS-------N------SDL----RTLLVATANRSILVVEDIDC 315 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~-------~------~~l----~~l~~~~~~~sIL~iDdiD~ 315 (473)
.+++||-|.||.|||+|+.|+|+..|-.++.+++++-.+ . .++ ...+..+.++.-+++||+.-
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL 1622 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL 1622 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh
Confidence 467999999999999999999999999999999886411 0 111 12344556788999999964
Q ss_pred ccccccCCccccCCCCCCCccchhHHHHHHHHHhccccc----------CCCCceEEEEecCCC------CCCCccccCC
Q 012016 316 TIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWS----------SCGDERIIVFTTNHK------EKLDPALLRP 379 (473)
Q Consensus 316 l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~----------~~~~~~iiI~tTN~~------~~ld~aLlrp 379 (473)
. ++..+.+|-.++|.-.. .+.++..|++|-|.- ..|+..++.
T Consensus 1623 a---------------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n- 1680 (4600)
T COG5271 1623 A---------------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN- 1680 (4600)
T ss_pred h---------------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh-
Confidence 3 46677788777764321 122344555555543 358889998
Q ss_pred CceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 380 GRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 380 gRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
||- +|.|...+.+....|+...+.
T Consensus 1681 -RFs-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1681 -RFS-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred -hhh-eEEecccccchHHHHHHhhCC
Confidence 995 688998888888888877665
No 268
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.87 E-value=6.7e-05 Score=79.01 Aligned_cols=64 Identities=23% Similarity=0.274 Sum_probs=48.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCchHHHHHHHH------------------hccCceEEEe
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNSDLRTLLVA------------------TANRSILVVE 311 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~~l~~~------------------~~~~sIL~iD 311 (473)
...++++|.+||||+++++++.... +.+++.++|..+. ...+...+.. ..+++.||||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~-~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN-ESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC-HHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEe
Confidence 4579999999999999999998765 5789999999864 2334333311 2246889999
Q ss_pred cccccc
Q 012016 312 DIDCTI 317 (473)
Q Consensus 312 diD~l~ 317 (473)
|||.+.
T Consensus 241 ei~~l~ 246 (441)
T PRK10365 241 EIGDIS 246 (441)
T ss_pred ccccCC
Confidence 999884
No 269
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.87 E-value=4.2e-05 Score=76.52 Aligned_cols=98 Identities=21% Similarity=0.312 Sum_probs=59.2
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhcCCce-EEcccc-----------cccCc-hHHHHHHHH-hccCceEEEeccccc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDV-YDLELT-----------ELRSN-SDLRTLLVA-TANRSILVVEDIDCT 316 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l~~~~-~~l~~~-----------~~~~~-~~l~~l~~~-~~~~sIL~iDdiD~l 316 (473)
.+++|++||||-|+|||+|.-..-..+..+- ..+-.. .+.+. ..+..+-.. +.+--||+|||+.--
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~Vt 142 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVT 142 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeeec
Confidence 4678999999999999999999888774322 111100 00111 111111111 124579999998642
Q ss_pred cccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCC-CCC
Q 012016 317 IDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHK-EKL 372 (473)
Q Consensus 317 ~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~-~~l 372 (473)
+-....+++.|++.+=. .++++|+|+|.+ +.|
T Consensus 143 ------------------DI~DAMiL~rL~~~Lf~------~GV~lvaTSN~~P~~L 175 (367)
T COG1485 143 ------------------DIADAMILGRLLEALFA------RGVVLVATSNTAPDNL 175 (367)
T ss_pred ------------------ChHHHHHHHHHHHHHHH------CCcEEEEeCCCChHHh
Confidence 22245677777776642 459999999963 443
No 270
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.85 E-value=1.7e-05 Score=72.19 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=31.5
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
+.+..++|+||||||||++++++|..+++++++.+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 34678999999999999999999999999998765
No 271
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.83 E-value=0.00066 Score=70.05 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=57.4
Q ss_pred eEEEEecCCC--CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc---------------------cCCHHHHH
Q 012016 360 RIIVFTTNHK--EKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE---------------------HILFEEIE 416 (473)
Q Consensus 360 ~iiI~tTN~~--~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~---------------------~~l~~~i~ 416 (473)
.+|+.|++.- ..|..|| |+|.-..|.++.++++.-+..+...|.... .....++.
T Consensus 185 HVIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld 262 (431)
T PF10443_consen 185 HVIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELD 262 (431)
T ss_pred EEEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHH
Confidence 3444444421 3455565 457778999999999998888888886531 13556777
Q ss_pred HHHhcCCCCHHHHHHHH---hcCCCHHHHHHHHHHH
Q 012016 417 ELISTTQVTPAEVAEQL---MRNDDPELVLNGLIEF 449 (473)
Q Consensus 417 ~l~~~~~~t~a~i~~~l---~~~~~~~~al~~l~~~ 449 (473)
..++..|--.-|+.-+. .....+..|+++++.-
T Consensus 263 ~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 263 ECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 77776555555553332 2356899999988753
No 272
>PRK07261 topology modulation protein; Provisional
Probab=97.80 E-value=8.5e-05 Score=68.18 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=61.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPI 335 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~ 335 (473)
+++.|+||+|||||++.|+..++.+++.+|.-..... . .+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~--------------~---~~----------------------- 42 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN--------------W---QE----------------------- 42 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc--------------c---cc-----------------------
Confidence 7899999999999999999999998877664322100 0 00
Q ss_pred cchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 336 QQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 336 ~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
......+..+.+.+.+ + . +|+-.|....+-+..+. ++|..|.+.+|.......++++.+.
T Consensus 43 ~~~~~~~~~~~~~~~~------~-~-wIidg~~~~~~~~~~l~--~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 43 RDDDDMIADISNFLLK------H-D-WIIDGNYSWCLYEERMQ--EADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred CCHHHHHHHHHHHHhC------C-C-EEEcCcchhhhHHHHHH--HCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 0001111112222211 2 3 44444444433234444 7899999999988888888888764
No 273
>PRK08118 topology modulation protein; Reviewed
Probab=97.80 E-value=4.1e-05 Score=70.00 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=29.9
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
.+++.||||+||||+++.|++.++.+++.+|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999998884
No 274
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.80 E-value=4.4e-05 Score=81.04 Aligned_cols=163 Identities=15% Similarity=0.224 Sum_probs=99.7
Q ss_pred ccccccchHHHHHHHHHHHHHHhchhHHhhhcCCC--CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc------
Q 012016 218 FETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAW--KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL------ 289 (473)
Q Consensus 218 f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~--~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~------ 289 (473)
|-.|.|++.+|..|.-.+ +.+-..+..-|.+. .-++++.|.||||||-+.++.++.+...+|..--.+-
T Consensus 344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHHHH---hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 456778888888775433 22222222222222 2359999999999999999999999888875432211
Q ss_pred ---cCch----HHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcc---------cc
Q 012016 290 ---RSNS----DLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDG---------LW 353 (473)
Q Consensus 290 ---~~~~----~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~ 353 (473)
.++. .+..--...+..+|..|||+|.+-. .-.-.++.+|+. +.
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~---------------------~dqvAihEAMEQQtISIaKAGv~ 479 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV---------------------KDQVAIHEAMEQQTISIAKAGVV 479 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccCh---------------------HhHHHHHHHHHhheehheecceE
Confidence 1110 0000001124789999999998731 111234455542 22
Q ss_pred cCCCCceEEEEecCCCC-------------CCCccccCCCceee-EEEeCCCCHHHHHHHHHHHhCc
Q 012016 354 SSCGDERIIVFTTNHKE-------------KLDPALLRPGRMDV-HVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 354 ~~~~~~~iiI~tTN~~~-------------~ld~aLlrpgRfd~-~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
.+-+...-|++++|... .++++++. |||. .|-+..|++..=..|.++.+..
T Consensus 480 aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 480 ATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred EeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 22223455788888653 46788999 9994 4677889988877777777654
No 275
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.79 E-value=0.00013 Score=65.31 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-.+.+.||||+|||+++.-+|+.|
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3468999999999999999999888
No 276
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.79 E-value=0.00011 Score=83.96 Aligned_cols=138 Identities=20% Similarity=0.224 Sum_probs=89.0
Q ss_pred CCceeEEeCCCCCCHHHH-HHHHHHhcCCceEEcccccccCchHHHHHHHHhc-----------------cCceEEEecc
Q 012016 252 WKRGYLLYGPPGTGKSSL-IAAMANYLNFDVYDLELTELRSNSDLRTLLVATA-----------------NRSILVVEDI 313 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~l-a~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~-----------------~~sIL~iDdi 313 (473)
-.|+|+++||||+|||+| ..++-+++.+.+..++.+.-.........+.... ..-|||.|||
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeI 1572 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEI 1572 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeecc
Confidence 368999999999999995 5689999999999999877654443444443321 2369999999
Q ss_pred ccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCC------CceEEEEecCCCCCC-----CccccCCCce
Q 012016 314 DCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCG------DERIIVFTTNHKEKL-----DPALLRPGRM 382 (473)
Q Consensus 314 D~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~------~~~iiI~tTN~~~~l-----d~aLlrpgRf 382 (473)
. +.. .+ . ...+..-..+..|+ +-.|+|+... .++++.+++|.+.+. ...++| |
T Consensus 1573 n-Lp~--~~--~-------y~~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r--~- 1636 (3164)
T COG5245 1573 N-LPY--GF--E-------YYPPTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR--K- 1636 (3164)
T ss_pred C-Ccc--cc--c-------cCCCceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--C-
Confidence 8 422 11 0 00111111222232 3356666432 247788899987543 234554 2
Q ss_pred eeEEEeCCCCHHHHHHHHHHHhC
Q 012016 383 DVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 383 d~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
...|++.||.......|...++.
T Consensus 1637 ~v~vf~~ype~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1637 PVFVFCCYPELASLRNIYEAVLM 1659 (3164)
T ss_pred ceEEEecCcchhhHHHHHHHHHH
Confidence 46789999999998888887765
No 277
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.0001 Score=75.56 Aligned_cols=102 Identities=21% Similarity=0.318 Sum_probs=62.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc----C-CceEEcccccc----------------------cCchHHHHHHHHhccC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL----N-FDVYDLELTEL----------------------RSNSDLRTLLVATANR 305 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l----~-~~~~~l~~~~~----------------------~~~~~l~~l~~~~~~~ 305 (473)
+..++|.||+|+|||+++..||..+ | ..+..+..... .+...+...+....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4569999999999999999999864 3 24443333322 2234556666666778
Q ss_pred ceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCcc
Q 012016 306 SILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPA 375 (473)
Q Consensus 306 sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~a 375 (473)
.+|+||...... ....+...+..+.+... +-...+|+-+|+..+.++..
T Consensus 217 DlVLIDTaG~~~--------------------~d~~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 217 HMVLIDTIGMSQ--------------------RDRTVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred CEEEEcCCCCCc--------------------ccHHHHHHHHHHhccCC-CCeEEEEecCccChHHHHHH
Confidence 999999986431 12345556666654322 11224444566666666544
No 278
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.74 E-value=0.00021 Score=65.90 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=23.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHhc---CCceEEcc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l---~~~~~~l~ 285 (473)
+|++||||||||+++..++.+. |.+++.++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 7899999999999998877654 55555444
No 279
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.71 E-value=0.00039 Score=65.28 Aligned_cols=90 Identities=27% Similarity=0.435 Sum_probs=53.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccC----------chHHHHHHHHh-----------ccCceEE
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRS----------NSDLRTLLVAT-----------ANRSILV 309 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~----------~~~l~~l~~~~-----------~~~sIL~ 309 (473)
+..++.||||||||++++.++..+ +..++.+..+.-.. ...+..++... ....+||
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 568899999999999999988766 66777666554311 12222222211 2347999
Q ss_pred EeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCC
Q 012016 310 VEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNH 368 (473)
Q Consensus 310 iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~ 368 (473)
|||+..+ ....+..|+..+.. .+..+|+|+=.+.
T Consensus 99 VDEasmv---------------------~~~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMV---------------------DSRQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG----------------------BHHHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred Eeccccc---------------------CHHHHHHHHHHHHh----cCCEEEEECCcch
Confidence 9999765 24456666766553 2345666665553
No 280
>PF14516 AAA_35: AAA-like domain
Probab=97.70 E-value=0.00063 Score=69.20 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=31.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTEL 289 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~ 289 (473)
+.-+.++||..+|||||+..+.+.+ |+..+.+|+..+
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 4568999999999999999888776 788888887765
No 281
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.70 E-value=6.2e-05 Score=65.00 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=41.9
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.|.|++-+++.|++.+..++..+. -.-|--+-|+||||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 678999999999999999987542 1112345699999999999999999986
No 282
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.70 E-value=0.00024 Score=67.52 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=30.3
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
|++...-++++||||+|||+++..+|... +.+++.++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56666779999999999999999988765 566666654
No 283
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.70 E-value=0.00016 Score=67.29 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=82.7
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc---Cc---h--H--HHHHHHH-hccCceEEEeccccccccc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR---SN---S--D--LRTLLVA-TANRSILVVEDIDCTIDLQ 320 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~---~~---~--~--l~~l~~~-~~~~sIL~iDdiD~l~~~~ 320 (473)
.++-++|.||+|+|||+|++.|.....--++.++.+.-. .+ . . =++-|.. ..++..+--.+.+.-
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~---- 78 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDN---- 78 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCe----
Confidence 456799999999999999999988763222333332210 00 0 0 0112222 123333333333211
Q ss_pred cCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccC--CCceeeEEEeCCCCHHHHHH
Q 012016 321 DRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLR--PGRMDVHVHMSYCTPSGFKL 398 (473)
Q Consensus 321 ~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlr--pgRfd~~I~~~~p~~~~r~~ 398 (473)
..+.+...+...++ .+.++|+..+.. .+ ..+.. |.+. ..|++..|+.+.+.+
T Consensus 79 -------------~YGt~~~~i~~~~~----------~g~~~i~d~~~~-g~-~~l~~~~~~~~-~~Ifi~pps~e~l~~ 132 (186)
T PRK14737 79 -------------YYGTPKAFIEDAFK----------EGRSAIMDIDVQ-GA-KIIKEKFPERI-VTIFIEPPSEEEWEE 132 (186)
T ss_pred -------------eecCcHHHHHHHHH----------cCCeEEEEcCHH-HH-HHHHHhCCCCe-EEEEEECCCHHHHHH
Confidence 12334444444442 224444433321 11 11222 2221 578999999777554
Q ss_pred HHHHHhCccccCCHHHHHHHHhcCC--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 012016 399 LAANYLGIKEHILFEEIEELISTTQ--VTPAEVAEQLMRNDDPELVLNGLIEFLKVK 453 (473)
Q Consensus 399 l~~~~l~~~~~~l~~~i~~l~~~~~--~t~a~i~~~l~~~~~~~~al~~l~~~l~~~ 453 (473)
-+... .....+++...+.... ..-....+.++.+++.+.+.+.+...+..+
T Consensus 133 RL~~R----~~~s~e~i~~Rl~~~~~e~~~~~~~D~vI~N~dle~a~~ql~~ii~~~ 185 (186)
T PRK14737 133 RLIHR----GTDSEESIEKRIENGIIELDEANEFDYKIINDDLEDAIADLEAIICGK 185 (186)
T ss_pred HHHhc----CCCCHHHHHHHHHHHHHHHhhhccCCEEEECcCHHHHHHHHHHHHhcC
Confidence 33321 2223455655554311 111222334456779999999998887654
No 284
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.69 E-value=0.00063 Score=66.61 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=40.6
Q ss_pred eEEEEecCC------------CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHH
Q 012016 360 RIIVFTTNH------------KEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELI 419 (473)
Q Consensus 360 ~iiI~tTN~------------~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~ 419 (473)
-++|++||+ |..++-.|+. |+ ..|...+.+.++.+.|++.....++..+.++...++
T Consensus 318 PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~L 386 (454)
T KOG2680|consen 318 PIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLL 386 (454)
T ss_pred cEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHH
Confidence 467777775 5677888887 77 466777777888888888877777666666555554
No 285
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.68 E-value=9.5e-05 Score=67.70 Aligned_cols=23 Identities=35% Similarity=0.739 Sum_probs=20.4
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
.++|.|+||+||||+++.+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 37999999999999999999988
No 286
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.68 E-value=0.0002 Score=74.54 Aligned_cols=89 Identities=19% Similarity=0.247 Sum_probs=67.6
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCc
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSN 292 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~ 292 (473)
..+..++|.......+++.++.-..+ .-.|||.|..||||..+|++|-+.. +.|++.+||..+-.
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA~S-----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe- 287 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVAKS-----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE- 287 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHhcC-----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch-
Confidence 56789999998888888877754432 3479999999999999999999877 67999999998732
Q ss_pred hHHH-HHHH-----------------HhccCceEEEeccccc
Q 012016 293 SDLR-TLLV-----------------ATANRSILVVEDIDCT 316 (473)
Q Consensus 293 ~~l~-~l~~-----------------~~~~~sIL~iDdiD~l 316 (473)
+-+. ++|- +..+++-||+|||..+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel 329 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL 329 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC
Confidence 1111 2221 1236789999999876
No 287
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.66 E-value=6.9e-05 Score=81.77 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=74.5
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcccc-ccc--C-----chHHHHHHHH-----hccCceEEEecccccccccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELT-ELR--S-----NSDLRTLLVA-----TANRSILVVEDIDCTIDLQD 321 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~-~~~--~-----~~~l~~l~~~-----~~~~sIL~iDdiD~l~~~~~ 321 (473)
++||.|.||||||.|.+.+++.+...+|.---+ +.. + +...-+.... .+.++|.+|||+|.+-
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~---- 396 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN---- 396 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC----
Confidence 599999999999999999999997777643211 110 0 0000011111 2478999999999772
Q ss_pred CCccccCCCCCCCccchhHHHHHHHHHhccc---------ccCCCCceEEEEecCCCC-------------CCCccccCC
Q 012016 322 RLPADIAGEGEGPIQQNKVTLSGFLNFIDGL---------WSSCGDERIIVFTTNHKE-------------KLDPALLRP 379 (473)
Q Consensus 322 r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~iiI~tTN~~~-------------~ld~aLlrp 379 (473)
....+.+...|+.. ...-+...-|++++|.+. .|+++|+.
T Consensus 397 -----------------~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS- 458 (682)
T COG1241 397 -----------------EEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS- 458 (682)
T ss_pred -----------------hHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh-
Confidence 22334455555421 111112344677788653 47888999
Q ss_pred CceeeEEEeC-CCCHHHHHHHHHH
Q 012016 380 GRMDVHVHMS-YCTPSGFKLLAAN 402 (473)
Q Consensus 380 gRfd~~I~~~-~p~~~~r~~l~~~ 402 (473)
|||...-+. .|+.+.=..|+.+
T Consensus 459 -RFDLifvl~D~~d~~~D~~ia~h 481 (682)
T COG1241 459 -RFDLIFVLKDDPDEEKDEEIAEH 481 (682)
T ss_pred -hCCeeEEecCCCCccchHHHHHH
Confidence 999765443 3666543333333
No 288
>PRK13947 shikimate kinase; Provisional
Probab=97.64 E-value=5.1e-05 Score=69.17 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=30.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
+++|.|+||||||++++.+|+.+++++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 58999999999999999999999999998774
No 289
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.62 E-value=0.00024 Score=67.64 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHH
Q 012016 254 RGYLLYGPPGTGKSSLIAAMA 274 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA 274 (473)
+.++|.||.|+|||++.+.++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 679999999999999999998
No 290
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.61 E-value=0.00034 Score=67.41 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=29.5
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
|.|.+..++++||||||||+++..++... +.+++.++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67777889999999999999999987543 555555443
No 291
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.60 E-value=5.9e-05 Score=67.26 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=28.8
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.++|+||||+|||++++.+|..+++++++.+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4799999999999999999999999998776
No 292
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.59 E-value=0.00026 Score=66.54 Aligned_cols=113 Identities=22% Similarity=0.267 Sum_probs=65.0
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHHHhccCceEEEeccccccccccCCccccC
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIA 328 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~ 328 (473)
|....-.++|.|+.|+|||++++.|+.+ +..+......+.+ ....+...-|+.|||++.+..
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~-----~~~d~~~~~~~kd---~~~~l~~~~iveldEl~~~~k---------- 109 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE-----YFSDSINDFDDKD---FLEQLQGKWIVELDELDGLSK---------- 109 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH-----hccCccccCCCcH---HHHHHHHhHheeHHHHhhcch----------
Confidence 4444556899999999999999999766 2222222112222 223445668999999987631
Q ss_pred CCCCCCccchhHHHHHHHHHh-cccc-------cCCCCceEEEEecCCCCCC-CccccCCCceeeEEEeCC
Q 012016 329 GEGEGPIQQNKVTLSGFLNFI-DGLW-------SSCGDERIIVFTTNHKEKL-DPALLRPGRMDVHVHMSY 390 (473)
Q Consensus 329 ~~~~~~~~~~~~~ls~LL~~l-dg~~-------~~~~~~~iiI~tTN~~~~l-d~aLlrpgRfd~~I~~~~ 390 (473)
.....+..++..- +... ...+...++|+|||..+-| |+.=-| || ..|+++.
T Consensus 110 --------~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 110 --------KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred --------hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 1122333333221 1111 1112235789999998755 455556 77 4566554
No 293
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.59 E-value=0.00025 Score=67.85 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=31.9
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~ 287 (473)
|.+...-++++||||+|||+++..+|... +.+++.+++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56666779999999999999999998754 6777777766
No 294
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00087 Score=69.33 Aligned_cols=65 Identities=25% Similarity=0.462 Sum_probs=43.4
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc-------CCceEEcccccc----------------------cCchHHHHHHHHh
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL-------NFDVYDLELTEL----------------------RSNSDLRTLLVAT 302 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l-------~~~~~~l~~~~~----------------------~~~~~l~~l~~~~ 302 (473)
.++.++|+||+|+|||+.+.-+|..+ +..+..+++... .....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35679999999999999999999865 234433333221 1123445555555
Q ss_pred ccCceEEEeccccc
Q 012016 303 ANRSILVVEDIDCT 316 (473)
Q Consensus 303 ~~~sIL~iDdiD~l 316 (473)
....+|+||.+..+
T Consensus 253 ~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 KDFDLVLVDTIGKS 266 (388)
T ss_pred CCCCEEEEcCCCCC
Confidence 56788999998754
No 295
>PRK03839 putative kinase; Provisional
Probab=97.58 E-value=6.1e-05 Score=69.47 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=28.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
++|.|+||+||||+++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999998765
No 296
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.58 E-value=0.00019 Score=65.81 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=46.5
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCch-----------------------HHHHHHHH-hccCceEEE
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNS-----------------------DLRTLLVA-TANRSILVV 310 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~-----------------------~l~~l~~~-~~~~sIL~i 310 (473)
-+|+.||||+|||+++..++..++.+++.+.......++ ++.+++.. ..++.+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 479999999999999999999998888777765543221 34444444 345668899
Q ss_pred ecccccc
Q 012016 311 EDIDCTI 317 (473)
Q Consensus 311 DdiD~l~ 317 (473)
|-+..+.
T Consensus 83 D~Lt~~~ 89 (170)
T PRK05800 83 DCLTTWV 89 (170)
T ss_pred hhHHHHH
Confidence 9888764
No 297
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.58 E-value=4.5e-05 Score=67.15 Aligned_cols=30 Identities=40% Similarity=0.655 Sum_probs=25.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
+++.||||+||||+++.++..++..++..|
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~~D 31 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVISQD 31 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEeHH
Confidence 689999999999999999999995555443
No 298
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.57 E-value=0.00019 Score=66.29 Aligned_cols=29 Identities=41% Similarity=0.716 Sum_probs=24.6
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEE
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~ 283 (473)
.++|.||||+||||+|+.||+.++++-++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 47999999999999999999996555443
No 299
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.57 E-value=5.7e-05 Score=68.78 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=31.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
+.+.|.|++|+||||+.+++|+.|+++|++.|-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 579999999999999999999999999999884
No 300
>PRK00625 shikimate kinase; Provisional
Probab=97.57 E-value=7e-05 Score=68.91 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=29.9
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
.++|.|+||+|||++++.+|+.++++++++|.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 48999999999999999999999999998873
No 301
>PRK13949 shikimate kinase; Provisional
Probab=97.56 E-value=7.2e-05 Score=68.54 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=29.9
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
.++|.||||+|||++++.+|+.++++++++|.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 68999999999999999999999999998773
No 302
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.54 E-value=0.0012 Score=68.79 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=69.9
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcc-cccccCchHHHHH---HHHhc--cCceEEEeccccccccccCCccccC
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE-LTELRSNSDLRTL---LVATA--NRSILVVEDIDCTIDLQDRLPADIA 328 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~-~~~~~~~~~l~~l---~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~ 328 (473)
-++++||.+||||++++-+...+.-.++.++ +........+.+. +.... ....+|||||.++-+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~---------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD---------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh----------
Confidence 8999999999999999888888755433333 3333333333222 22222 348999999998621
Q ss_pred CCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCC-CccccCCCceeeEEEeCCCCHHHHHH
Q 012016 329 GEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKL-DPALLRPGRMDVHVHMSYCTPSGFKL 398 (473)
Q Consensus 329 ~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~l-d~aLlrpgRfd~~I~~~~p~~~~r~~ 398 (473)
....+..|. |. +...++|.++|..-.+ ..+-.=|||. ..+++.+.+..++..
T Consensus 109 ---------W~~~lk~l~---d~-----~~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 ---------WERALKYLY---DR-----GNLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ---------HHHHHHHHH---cc-----ccceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 233333333 32 1114566655554222 2233346794 688999999999854
No 303
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=97.53 E-value=0.0062 Score=56.54 Aligned_cols=138 Identities=17% Similarity=0.224 Sum_probs=94.1
Q ss_pred eEEEEecCCCCccchhHHHHHHHhccCC-CccccceEEeecc----------------------CCCceEEecCCCceEE
Q 012016 63 LTIVIDEHDGLAKNQIYDAAKVYLGKKT-SPSVQRIKVSKLE----------------------KENHVNISMESDEQVV 119 (473)
Q Consensus 63 ~ti~i~e~~~~~~n~ly~a~~~YL~~~~-~~~~~rl~~~~~~----------------------~~~~~~~~~~~~~~v~ 119 (473)
.|+.|+. .+++|+.+-.+|+... ...++++.+.... +.+.+.+.+..| ...
T Consensus 27 ~sv~I~~-----~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h~ 100 (187)
T PF08740_consen 27 SSVEIPS-----DDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-THW 100 (187)
T ss_pred EEEEECC-----CCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CEE
Confidence 4667765 4578999999999775 4446777776522 356788999999 777
Q ss_pred EeecCeeeEEEEEEeeccCCccCCCCCCcccceeEEEEEecCCchhHHHHhhhHHHHHHHHHHHhhcceeeEeeeccccc
Q 012016 120 DVFNGIKLKWVLVCRQVESRSFNHSSTNIQAQVRYFELTFPKKYKDVVIGSYLPCVEKEAKSVQQESKTIKILTVNYNNL 199 (473)
Q Consensus 120 D~f~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~~~~~~l~~yl~~v~~~~~~~~~~~~~~~i~~~~~~~~ 199 (473)
..|+| .|..+.+..+....+.+. ..+.+.++|++..+.++ +|..+|.+..+... .+++++ ..||.....
T Consensus 101 F~y~G---~~~~~~R~~~~~~~~~~~---~~~~e~l~l~~lg~s~~-~l~~ll~ear~~~~-~~~~~~-t~Iy~~~~~-- 169 (187)
T PF08740_consen 101 FWYKG---RWFWFSRQRESNSYNSWT---GAPDETLTLSCLGRSPK-PLKDLLEEAREYYL-KKQKGK-TTIYRADGS-- 169 (187)
T ss_pred EEECC---EEEEEEEEeccccccccC---CCCceEEEEEEecCCHH-HHHHHHHHHHHHHH-HhcCCc-EEEEeCCCC--
Confidence 88998 688888887544433222 23578999999988765 56666555544432 233344 458887432
Q ss_pred ccCCCCcceeccCCCCCCcccc
Q 012016 200 YCNWTDAWIPVNLDHPATFETL 221 (473)
Q Consensus 200 ~~~~~~~w~~~~~~~p~~f~~l 221 (473)
+..|..+.-.++.++++|
T Consensus 170 ----~~~W~~~~~r~~RplsTV 187 (187)
T PF08740_consen 170 ----EYRWRRVASRPKRPLSTV 187 (187)
T ss_pred ----CCCCcCCCCcCCCCCCCC
Confidence 126999888888888875
No 304
>PRK13948 shikimate kinase; Provisional
Probab=97.52 E-value=0.00011 Score=68.10 Aligned_cols=35 Identities=26% Similarity=0.151 Sum_probs=32.4
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
++++.++|.|++|+|||++++.+|+.++.++++.|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 34678999999999999999999999999999888
No 305
>PRK05973 replicative DNA helicase; Provisional
Probab=97.52 E-value=0.00049 Score=66.40 Aligned_cols=38 Identities=24% Similarity=0.028 Sum_probs=28.9
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
|.++..-+++.|+||+|||+++..+|... |.+++++++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 56666779999999999999888776644 666655443
No 306
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.49 E-value=0.00078 Score=67.46 Aligned_cols=132 Identities=17% Similarity=0.262 Sum_probs=90.6
Q ss_pred cceeccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceE
Q 012016 206 AWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVY 282 (473)
Q Consensus 206 ~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~ 282 (473)
....+..++...|+.+++.....+.+++....+-. ...-+|+.|..||||-.+|+|..... ..||+
T Consensus 191 ~~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~Am-----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFl 259 (511)
T COG3283 191 QLQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAM-----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFL 259 (511)
T ss_pred HHhhcccccccchHHHhhccHHHHHHHHHHHHhhc-----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCee
Confidence 34455666778999999988777777665554432 12358999999999999999977655 68999
Q ss_pred EcccccccCchHHHHHHH------------HhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHh-
Q 012016 283 DLELTELRSNSDLRTLLV------------ATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFI- 349 (473)
Q Consensus 283 ~l~~~~~~~~~~l~~l~~------------~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~l- 349 (473)
.++|..+-.+..=.++|- +.+++.-+++|||..+. ......||.++
T Consensus 260 alNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmS---------------------p~lQaKLLRFL~ 318 (511)
T COG3283 260 ALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMS---------------------PRLQAKLLRFLN 318 (511)
T ss_pred EeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcC---------------------HHHHHHHHHHhc
Confidence 999999844332333333 33467888999997662 45566677777
Q ss_pred cccccCCCC------ceEEEEecCCC
Q 012016 350 DGLWSSCGD------ERIIVFTTNHK 369 (473)
Q Consensus 350 dg~~~~~~~------~~iiI~tTN~~ 369 (473)
||....-|+ ++-||+||..+
T Consensus 319 DGtFRRVGee~Ev~vdVRVIcatq~n 344 (511)
T COG3283 319 DGTFRRVGEDHEVHVDVRVICATQVN 344 (511)
T ss_pred CCceeecCCcceEEEEEEEEeccccc
Confidence 443222222 36788888765
No 307
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=97.49 E-value=0.0008 Score=67.72 Aligned_cols=125 Identities=20% Similarity=0.250 Sum_probs=69.7
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHHHhccCceEEEeccccccccccCCccccC
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIA 328 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~ 328 (473)
++|.+|.+||-||-.||||+||+|+-+.+|-....+++.. +.|.--+--+-..-.+++||+---..
T Consensus 151 N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQfmVvFEDVKGq~~---------- 216 (417)
T PF06431_consen 151 NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPS---------- 216 (417)
T ss_dssp TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-SEEEEEEE--SST----------
T ss_pred CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceEEEEEEecCCCcC----------
Confidence 4566889999999999999999999999998888888764 34444444445778899999842210
Q ss_pred CCCCCCccchhHHHHHHHHHhccccc-----CCCCce-----EEEEecCCCCCCCccccCCCceeeEEEeCC
Q 012016 329 GEGEGPIQQNKVTLSGFLNFIDGLWS-----SCGDER-----IIVFTTNHKEKLDPALLRPGRMDVHVHMSY 390 (473)
Q Consensus 329 ~~~~~~~~~~~~~ls~LL~~ldg~~~-----~~~~~~-----iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~ 390 (473)
...+-..+..-..+..|-..+||... ..-+.+ --|.|.|. -.++..+.- ||...+.|..
T Consensus 217 ~~~~Lp~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNe-Y~iP~Tv~v--Rf~~~~~F~~ 285 (417)
T PF06431_consen 217 DNKDLPPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNE-YKIPQTVKV--RFCKVLDFRP 285 (417)
T ss_dssp TTTT----SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--B--HHHHT--TEEEEEE---
T ss_pred CCCCCCCCCCcccchhhhhhccCceeechhhhhcccccccCCCceEeecc-ccCCcceee--eeEeeEeccc
Confidence 00011122233455556667776421 000111 24668876 467788877 9998888864
No 308
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.48 E-value=0.00044 Score=65.09 Aligned_cols=63 Identities=19% Similarity=0.366 Sum_probs=41.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHh-----cCCceE-------------Ecccc-ccc--------CchHHHHHHHHhc--
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANY-----LNFDVY-------------DLELT-ELR--------SNSDLRTLLVATA-- 303 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~-----l~~~~~-------------~l~~~-~~~--------~~~~l~~l~~~~~-- 303 (473)
.+.++|.||+|+|||++++.++.. .|.++- .+... ++. ....+.+++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 357899999999999999999853 344331 11000 000 1134566777777
Q ss_pred cCceEEEecccc
Q 012016 304 NRSILVVEDIDC 315 (473)
Q Consensus 304 ~~sIL~iDdiD~ 315 (473)
.+.++++||.-.
T Consensus 105 ~p~llllDEp~~ 116 (199)
T cd03283 105 EPVLFLLDEIFK 116 (199)
T ss_pred CCeEEEEecccC
Confidence 899999999854
No 309
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.47 E-value=0.0011 Score=69.69 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccc
Q 012016 226 EQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTE 288 (473)
Q Consensus 226 ~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~ 288 (473)
...+.+.+.+...+.......... ..|..++|+||+|+|||+++..+|..+ |..+..+++..
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 334555555555443321111111 236689999999999999999999887 55565555443
No 310
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.47 E-value=0.00063 Score=65.51 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=25.9
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHH-HHhc--CCceEEcc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAM-ANYL--NFDVYDLE 285 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~al-A~~l--~~~~~~l~ 285 (473)
|.+...-+++.||||||||+++..+ ++.+ +..+..++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4566678999999999999997544 4332 44554444
No 311
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.45 E-value=0.00065 Score=68.38 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=44.1
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc---------------------CchHHHHHHH---H
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR---------------------SNSDLRTLLV---A 301 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~---------------------~~~~l~~l~~---~ 301 (473)
|.|..+-++++||||||||+|+..++... +.++..++..... ..+.....+. .
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56667789999999999999977655443 5555555443210 1111112221 2
Q ss_pred hccCceEEEeccccccc
Q 012016 302 TANRSILVVEDIDCTID 318 (473)
Q Consensus 302 ~~~~sIL~iDdiD~l~~ 318 (473)
.....+||||-+.++.+
T Consensus 131 ~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVP 147 (321)
T ss_pred ccCCcEEEEcchhhhcc
Confidence 23678999999998864
No 312
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.43 E-value=6.3e-05 Score=68.98 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=26.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCc---eEEcccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELTEL 289 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~---~~~l~~~~~ 289 (473)
++.++|+||+|+|||++++++...+..+ ++.+++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5789999999999999999998887444 666666655
No 313
>PRK06217 hypothetical protein; Validated
Probab=97.43 E-value=0.00014 Score=67.40 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=29.1
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
.|+|.|+||+||||++++|+..++++++++|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence 48999999999999999999999999887763
No 314
>PRK04040 adenylate kinase; Provisional
Probab=97.43 E-value=0.0012 Score=61.61 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=26.0
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc--CCceE
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL--NFDVY 282 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l--~~~~~ 282 (473)
+.-++++|+||||||++++.++..+ +++++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3468999999999999999999999 66654
No 315
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.42 E-value=0.00037 Score=68.55 Aligned_cols=90 Identities=23% Similarity=0.411 Sum_probs=56.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC---ceEEccc-ccc
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF---DVYDLEL-TEL 289 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~---~~~~l~~-~~~ 289 (473)
.+.+++++...+...+.+.+.+...++ ...++++.||+|+|||++++++..++.. .++.++- .++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~-----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVR-----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHH-----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhccc-----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 445889998776666655554443332 1458999999999999999999998833 3333321 111
Q ss_pred -------------cCchHHHHHHHHh--ccCceEEEeccc
Q 012016 290 -------------RSNSDLRTLLVAT--ANRSILVVEDID 314 (473)
Q Consensus 290 -------------~~~~~l~~l~~~~--~~~sIL~iDdiD 314 (473)
.....+.+++..+ .+|.+|++.||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1234566666654 478999999995
No 316
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.41 E-value=0.00033 Score=70.54 Aligned_cols=57 Identities=25% Similarity=0.308 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 224 EQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 224 ~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.++.++.+.+.++..+.... -..++..+.|.|+||||||++++.+|..+|+++++++
T Consensus 109 ~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 109 SPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 34555555555554443211 2345678999999999999999999999999999766
No 317
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00066 Score=65.18 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.3
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
-+-|.||+|||||||.+.+|...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999876
No 318
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.40 E-value=0.00016 Score=64.46 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=26.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
++|.||||+|||++++.++..++..+++.|
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D 31 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGD 31 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCc
Confidence 689999999999999999999988776543
No 319
>PRK13946 shikimate kinase; Provisional
Probab=97.40 E-value=0.00016 Score=67.18 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=31.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
++.|+|.|+||||||++++.+|+.||+++++.|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 5689999999999999999999999999998884
No 320
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.38 E-value=0.00017 Score=66.49 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=26.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
+++.||||+|||++++.||..+++..+..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999999766654
No 321
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.38 E-value=0.00016 Score=65.50 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=25.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
++|.||||+|||++++.+++.++..+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~ 29 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEG 29 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 57899999999999999999998776544
No 322
>PRK14532 adenylate kinase; Provisional
Probab=97.37 E-value=0.00018 Score=66.72 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=27.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
.++|.||||+|||++++.||..+|++.+..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999999877655
No 323
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.37 E-value=0.00017 Score=63.63 Aligned_cols=30 Identities=30% Similarity=0.497 Sum_probs=28.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
+.+.|+||||||++++.||..++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999999887
No 324
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.36 E-value=0.00021 Score=65.61 Aligned_cols=34 Identities=41% Similarity=0.690 Sum_probs=31.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
+..++|.||+|+|||++++.+|+.+++++++.|.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999999988875
No 325
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.36 E-value=0.0007 Score=69.80 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=46.3
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc--------------------CchHHHHHHHHh--c
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR--------------------SNSDLRTLLVAT--A 303 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~--------------------~~~~l~~l~~~~--~ 303 (473)
|.++..-++|+||||+|||+|+..+|..+ +.++++++..+.. ....+..++... .
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 56666779999999999999999888765 3466665543210 112233333322 3
Q ss_pred cCceEEEecccccc
Q 012016 304 NRSILVVEDIDCTI 317 (473)
Q Consensus 304 ~~sIL~iDdiD~l~ 317 (473)
++.+|+||.|..+.
T Consensus 158 ~~~lVVIDSIq~l~ 171 (372)
T cd01121 158 KPDLVIIDSIQTVY 171 (372)
T ss_pred CCcEEEEcchHHhh
Confidence 78999999998875
No 326
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.35 E-value=0.00079 Score=66.88 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=41.0
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc----C-CceEEcccccc----------------------cCchHHHHHHHHhccC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL----N-FDVYDLELTEL----------------------RSNSDLRTLLVATANR 305 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l----~-~~~~~l~~~~~----------------------~~~~~l~~l~~~~~~~ 305 (473)
++.++|.||+|+|||+++..||.++ + ..+..+++... .....+...+......
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~ 273 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRDK 273 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccCC
Confidence 3468999999999999999999876 3 56665555442 1223455555555556
Q ss_pred ceEEEecc
Q 012016 306 SILVVEDI 313 (473)
Q Consensus 306 sIL~iDdi 313 (473)
.+|+||..
T Consensus 274 d~vliDt~ 281 (282)
T TIGR03499 274 DLILIDTA 281 (282)
T ss_pred CEEEEeCC
Confidence 77777753
No 327
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.35 E-value=0.00081 Score=60.78 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
-.+++.||+|||||+|.+++|+..
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 358999999999999999999865
No 328
>PRK14531 adenylate kinase; Provisional
Probab=97.35 E-value=0.00021 Score=66.20 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=27.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
+-+++.||||+|||++++.+|..+|++.+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4699999999999999999999999887654
No 329
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.35 E-value=0.0009 Score=67.46 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=45.4
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccc---------------------cCchHHHHHHH---H
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTEL---------------------RSNSDLRTLLV---A 301 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~---------------------~~~~~l~~l~~---~ 301 (473)
|.|..+-+.+|||||||||+|+..++... +..+..++.... .+.+.+..++. .
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 56666779999999999999998776443 556666554321 01112222222 2
Q ss_pred hccCceEEEeccccccc
Q 012016 302 TANRSILVVEDIDCTID 318 (473)
Q Consensus 302 ~~~~sIL~iDdiD~l~~ 318 (473)
.....+||||-+-++.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 23578999999998864
No 330
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.35 E-value=0.00076 Score=71.30 Aligned_cols=70 Identities=24% Similarity=0.342 Sum_probs=48.1
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc--------------------CchHHHHHHHHh--c
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR--------------------SNSDLRTLLVAT--A 303 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~--------------------~~~~l~~l~~~~--~ 303 (473)
|.+...-+||+||||+|||+|+..+|..+ +.++++++..+.. ....+.+++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 56666779999999999999999988765 5677766654320 112233333332 3
Q ss_pred cCceEEEeccccccc
Q 012016 304 NRSILVVEDIDCTID 318 (473)
Q Consensus 304 ~~sIL~iDdiD~l~~ 318 (473)
++.+||||.|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 678999999988753
No 331
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.34 E-value=0.0014 Score=65.34 Aligned_cols=156 Identities=19% Similarity=0.267 Sum_probs=93.1
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHH-HHH--hcCCceEEcccccc-cC----
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAA-MAN--YLNFDVYDLELTEL-RS---- 291 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~a-lA~--~l~~~~~~l~~~~~-~~---- 291 (473)
.+.|..+..+.+-+.+..-.-..+ ...+++.||.|+|||.++.. ++. +.|-+++.+-+... ..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 345556666666666655444333 56899999999999997763 333 56767665554332 11
Q ss_pred ----------------------chHHHHHHHHhc-------cCceEEEeccccccccccCCccccCCCCCCCccchhHHH
Q 012016 292 ----------------------NSDLRTLLVATA-------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTL 342 (473)
Q Consensus 292 ----------------------~~~l~~l~~~~~-------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~l 342 (473)
.+.+..++.... .+.|.++||+|-..+ ..++++
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~------------------h~rQtl 157 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP------------------HSRQTL 157 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc------------------chhhHH
Confidence 122233332221 235667788997643 223333
Q ss_pred HHHHHHhcccccCCCCceEEEEecCCCC---CCCccccCCCceeeE-EEeCC-CCHHHHHHHHHHHhCcc
Q 012016 343 SGFLNFIDGLWSSCGDERIIVFTTNHKE---KLDPALLRPGRMDVH-VHMSY-CTPSGFKLLAANYLGIK 407 (473)
Q Consensus 343 s~LL~~ldg~~~~~~~~~iiI~tTN~~~---~ld~aLlrpgRfd~~-I~~~~-p~~~~r~~l~~~~l~~~ 407 (473)
|-|..|-..+. ...+.||+.|.+.+ .|...+.. ||... |+|+. ...++...+.+..+...
T Consensus 158 --lYnlfDisqs~-r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~v~ 222 (408)
T KOG2228|consen 158 --LYNLFDISQSA-RAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLSVP 222 (408)
T ss_pred --HHHHHHHHhhc-CCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhcCC
Confidence 44666654432 34578888777654 44456666 88644 77765 46788889999888543
No 332
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.33 E-value=0.0011 Score=61.56 Aligned_cols=24 Identities=38% Similarity=0.711 Sum_probs=22.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+-++|.||+|+||+++++.|+...
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 568999999999999999999986
No 333
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.33 E-value=0.00073 Score=64.45 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=30.2
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---C------CceEEccccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---N------FDVYDLELTE 288 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~------~~~~~l~~~~ 288 (473)
|.+...-+.|+||||+|||+++..+|... + ..++.++...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 56667779999999999999999887653 2 5556655543
No 334
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.31 E-value=0.006 Score=70.07 Aligned_cols=150 Identities=17% Similarity=0.134 Sum_probs=84.0
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCc--------------------------------h----HHH
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSN--------------------------------S----DLR 296 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~--------------------------------~----~l~ 296 (473)
.+-++++||+|.|||+++...+...+ ++.-+++..-.++ . -+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 45689999999999999999887766 5544443211000 0 011
Q ss_pred HHHHH---hccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCC
Q 012016 297 TLLVA---TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLD 373 (473)
Q Consensus 297 ~l~~~---~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld 373 (473)
.++.. ...|.+|||||++.+-+ ......+..|+..+ +.+..+|+|+.....++
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~~-----------------~~~~~~l~~l~~~~-------~~~~~lv~~sR~~~~~~ 166 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLITN-----------------PEIHEAMRFFLRHQ-------PENLTLVVLSRNLPPLG 166 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCCC-----------------hHHHHHHHHHHHhC-------CCCeEEEEEeCCCCCCc
Confidence 22222 24678999999997621 11233444444432 23355555665422222
Q ss_pred c-cccCCCceeeEEEeC----CCCHHHHHHHHHHHhCccccCCHHHHHHHHhcCCCCHHHHHHH
Q 012016 374 P-ALLRPGRMDVHVHMS----YCTPSGFKLLAANYLGIKEHILFEEIEELISTTQVTPAEVAEQ 432 (473)
Q Consensus 374 ~-aLlrpgRfd~~I~~~----~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~t~a~i~~~ 432 (473)
- .+... +..+++. ..+.++-..++...++.. ...++++.+.+.++--|.-+...
T Consensus 167 ~~~l~~~---~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~~l~l~ 225 (903)
T PRK04841 167 IANLRVR---DQLLEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWATALQLI 225 (903)
T ss_pred hHhHHhc---CcceecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHHHHHHH
Confidence 1 11111 2234444 568888888887766543 34567777777776666655433
No 335
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00022 Score=62.94 Aligned_cols=43 Identities=28% Similarity=0.524 Sum_probs=33.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHH
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRT 297 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~ 297 (473)
..++|+.|-||||||+++..+|..++++.+.++ ++..+.++..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is--d~vkEn~l~~ 49 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS--DLVKENNLYE 49 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh--hHHhhhcchh
Confidence 458999999999999999999999999887654 4433444433
No 336
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.30 E-value=0.0013 Score=57.63 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=24.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD 280 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~ 280 (473)
..-++|.|+.|+|||++++++++.++.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4568999999999999999999999643
No 337
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.30 E-value=0.0035 Score=65.81 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=41.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEccccccc----------------------CchHHHHHHHHhccC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELTELR----------------------SNSDLRTLLVATANR 305 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~~~~~~----------------------~~~~l~~l~~~~~~~ 305 (473)
++.++|.||+|+|||+++..||..+ +..+..+++.... +..++...+......
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 4568999999999999999888754 3456655554321 123344444444556
Q ss_pred ceEEEecccc
Q 012016 306 SILVVEDIDC 315 (473)
Q Consensus 306 sIL~iDdiD~ 315 (473)
.+|+||....
T Consensus 301 DlVlIDt~G~ 310 (424)
T PRK05703 301 DVILIDTAGR 310 (424)
T ss_pred CEEEEeCCCC
Confidence 7788887643
No 338
>PTZ00202 tuzin; Provisional
Probab=97.29 E-value=0.017 Score=60.12 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=52.1
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCch
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNS 293 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~ 293 (473)
-|....+++|.+.....+...+.. .....++-+.|.||+|||||++++.+...++.+.+.+|... ...
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg--~eE 324 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG--TED 324 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC--HHH
Confidence 345566788877666665444331 12223457899999999999999999999998888888773 233
Q ss_pred HHHHHHHH
Q 012016 294 DLRTLLVA 301 (473)
Q Consensus 294 ~l~~l~~~ 301 (473)
-++.++..
T Consensus 325 lLr~LL~A 332 (550)
T PTZ00202 325 TLRSVVKA 332 (550)
T ss_pred HHHHHHHH
Confidence 44444443
No 339
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.29 E-value=0.00025 Score=65.84 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=27.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
++|.||||+|||++++.||..+++.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~ 31 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTG 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECc
Confidence 799999999999999999999998877653
No 340
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.28 E-value=0.00028 Score=64.37 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=30.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
..++|.|+||+|||++++.+|..+|+++++.|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 358999999999999999999999999998764
No 341
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.00025 Score=63.52 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=26.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEE
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~ 283 (473)
+-+.|||||||||+++-||+++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999985
No 342
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.24 E-value=0.0015 Score=62.51 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=26.4
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc----CCceEEcc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLE 285 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l----~~~~~~l~ 285 (473)
|.|....+|+.||||||||+|+..++... |.+++.++
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 67777889999999999999988655322 55555444
No 343
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.24 E-value=0.0013 Score=60.28 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=44.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC-----------------------chHHHHHHHHhccCceEEEec
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS-----------------------NSDLRTLLVATANRSILVVED 312 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~-----------------------~~~l~~l~~~~~~~sIL~iDd 312 (473)
+|+.||||+|||+++..++...+.+++++......+ ...+.+.+...+.+.+|+||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 689999999999999999988777777766554321 123444443333466899998
Q ss_pred cccccc
Q 012016 313 IDCTID 318 (473)
Q Consensus 313 iD~l~~ 318 (473)
+.....
T Consensus 82 lt~~~~ 87 (169)
T cd00544 82 LTLWVT 87 (169)
T ss_pred HhHHHH
Confidence 887653
No 344
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.00083 Score=60.40 Aligned_cols=26 Identities=42% Similarity=0.629 Sum_probs=23.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
..-+.|.||+|+|||+|+++|+..+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45789999999999999999999874
No 345
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0042 Score=63.96 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 225 QEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 225 ~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
.+.++.+.+.+...+.....+ ...++-++|.||+|+|||+++..||..+ +..+..+++
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 345556666655555432211 1124679999999999999999999877 344444443
No 346
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.23 E-value=0.0077 Score=58.16 Aligned_cols=125 Identities=17% Similarity=0.283 Sum_probs=75.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCC---ceEEcccccc---------------cCchHHH-----------HHHHHh-
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNF---DVYDLELTEL---------------RSNSDLR-----------TLLVAT- 302 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~---~~~~l~~~~~---------------~~~~~l~-----------~l~~~~- 302 (473)
+-.+.+.||+|||||+++..+-..+.. .++.+....- .....+. +.....
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 346899999999999999998887732 2222211000 0111111 111111
Q ss_pred ----ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccC
Q 012016 303 ----ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLR 378 (473)
Q Consensus 303 ----~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlr 378 (473)
..+.+|+|||+..- ......+..+++. |- --++.+|+++...-.|||.++.
T Consensus 93 ~~k~~~~~LiIlDD~~~~-------------------~~k~~~l~~~~~~--gR----H~~is~i~l~Q~~~~lp~~iR~ 147 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK-------------------KLKSKILRQFFNN--GR----HYNISIIFLSQSYFHLPPNIRS 147 (241)
T ss_pred ccCCCCCeEEEEeCCCCc-------------------hhhhHHHHHHHhc--cc----ccceEEEEEeeecccCCHHHhh
Confidence 12689999997421 1113345666642 21 1247788888888999999876
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 379 PGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 379 pgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
=++.++-++ -+......|++.+..
T Consensus 148 --n~~y~i~~~-~s~~dl~~i~~~~~~ 171 (241)
T PF04665_consen 148 --NIDYFIIFN-NSKRDLENIYRNMNI 171 (241)
T ss_pred --cceEEEEec-CcHHHHHHHHHhccc
Confidence 677777776 467777777777643
No 347
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.22 E-value=0.0014 Score=61.60 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
|+-++|.||+|+|||+.+.-||.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4568999999999999999999877
No 348
>PRK06547 hypothetical protein; Provisional
Probab=97.22 E-value=0.00048 Score=63.32 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=29.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
+.-|++.||+|+|||++++.+++.++.+++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 567899999999999999999999998877655
No 349
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.21 E-value=0.0016 Score=64.21 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=23.2
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
.++++.||+|+|||+|+++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999999883
No 350
>PLN02674 adenylate kinase
Probab=97.21 E-value=0.0014 Score=63.51 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=27.0
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEE
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~ 283 (473)
...++|.||||+||+++++.||..+++..+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4569999999999999999999999876554
No 351
>PRK06762 hypothetical protein; Provisional
Probab=97.21 E-value=0.00032 Score=63.64 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=28.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
+.-++|.|+||+|||++++.+++.++..++.++.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~ 35 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence 3568999999999999999999999655655553
No 352
>PRK14530 adenylate kinase; Provisional
Probab=97.20 E-value=0.00036 Score=66.34 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=27.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
..++|.||||+|||++++.||..++++++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3589999999999999999999999887754
No 353
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.19 E-value=0.0012 Score=64.87 Aligned_cols=39 Identities=21% Similarity=0.117 Sum_probs=31.3
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~ 287 (473)
|.+....++++||||||||+++..+|... |.++++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 56767779999999999999998776543 6677777765
No 354
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.19 E-value=0.0014 Score=66.67 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.2
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+|+|++|||.-|||||+|.-..-..+
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCceEEEecccCcchhHHHHHHhhcC
Confidence 48999999999999999998766443
No 355
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0018 Score=72.59 Aligned_cols=126 Identities=20% Similarity=0.307 Sum_probs=80.0
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc----------CCceEEcccccccC--------chHHHHHHHHh---ccCceEEEe
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLELTELRS--------NSDLRTLLVAT---ANRSILVVE 311 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~l~~~~~~~--------~~~l~~l~~~~---~~~sIL~iD 311 (473)
+++-+|.|.||+|||.++.-+|+.. +..++.++...+.. +..+..++... ..+.||+||
T Consensus 208 k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfig 287 (898)
T KOG1051|consen 208 KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLG 287 (898)
T ss_pred CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 4688999999999999999999876 34556666654421 34555666543 367899999
Q ss_pred ccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCC-----CCCCccccCCCceeeEE
Q 012016 312 DIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHK-----EKLDPALLRPGRMDVHV 386 (473)
Q Consensus 312 diD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~-----~~ld~aLlrpgRfd~~I 386 (473)
|++.+.... .. ........+|..+-. . ++.-+|+||..- -.=||+|-| ||+. +
T Consensus 288 elh~lvg~g-------------~~-~~~~d~~nlLkp~L~---r--g~l~~IGatT~e~Y~k~iekdPalEr--rw~l-~ 345 (898)
T KOG1051|consen 288 ELHWLVGSG-------------SN-YGAIDAANLLKPLLA---R--GGLWCIGATTLETYRKCIEKDPALER--RWQL-V 345 (898)
T ss_pred ceeeeecCC-------------Cc-chHHHHHHhhHHHHh---c--CCeEEEecccHHHHHHHHhhCcchhh--Ccce-e
Confidence 999987511 11 112233334443322 1 236677755432 234899999 9984 6
Q ss_pred EeCCCCHHHHHHHH
Q 012016 387 HMSYCTPSGFKLLA 400 (473)
Q Consensus 387 ~~~~p~~~~r~~l~ 400 (473)
.++.|+.+.-..++
T Consensus 346 ~v~~pS~~~~~~iL 359 (898)
T KOG1051|consen 346 LVPIPSVENLSLIL 359 (898)
T ss_pred EeccCcccchhhhh
Confidence 78899876533333
No 356
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.18 E-value=0.00081 Score=61.09 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.1
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+...+.|.||+|+|||+|++.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999999876
No 357
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.17 E-value=0.0014 Score=60.58 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=38.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCc--eEEccc---ccc-----cCchHHHHHH---HHhccCceEEEecccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD--VYDLEL---TEL-----RSNSDLRTLL---VATANRSILVVEDIDCTI 317 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~--~~~l~~---~~~-----~~~~~l~~l~---~~~~~~sIL~iDdiD~l~ 317 (473)
..-+.|.||.|+|||||++.|+..+... -+.++. ..+ .+...-+++- .-+.+|.++++||--.-+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 4468899999999999999999976211 011111 101 1112222221 123489999999986544
No 358
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.17 E-value=0.00036 Score=66.04 Aligned_cols=22 Identities=45% Similarity=0.842 Sum_probs=17.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHhc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l 277 (473)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777777666
No 359
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.17 E-value=0.00089 Score=67.62 Aligned_cols=66 Identities=27% Similarity=0.388 Sum_probs=48.7
Q ss_pred Ccc-ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-CCceEEcccccc
Q 012016 217 TFE-TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELTEL 289 (473)
Q Consensus 217 ~f~-~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-~~~~~~l~~~~~ 289 (473)
.|+ ++.|.++..+++++++...-.+. -.-++-+||.||+|+|||++++.|.+.+ .+++|.+..+.+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g~-------~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQGL-------EERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhcc-------CccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 355 78898888888877665443321 2335689999999999999999999988 457777654444
No 360
>PRK08233 hypothetical protein; Provisional
Probab=97.17 E-value=0.0018 Score=59.36 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=26.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC-CceEEcccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN-FDVYDLELT 287 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~-~~~~~l~~~ 287 (473)
.-+.+.|+||+||||+++.|+..++ ..++..+..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 3477889999999999999999985 445544443
No 361
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.16 E-value=0.002 Score=66.19 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcC
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~ 278 (473)
.+|.||||+|||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 78999999999999999999774
No 362
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.16 E-value=0.0016 Score=57.97 Aligned_cols=62 Identities=24% Similarity=0.321 Sum_probs=40.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCC-----------ceEEcccccccCchHHHHHHH---HhccCceEEEecccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNF-----------DVYDLELTELRSNSDLRTLLV---ATANRSILVVEDIDCTI 317 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~-----------~~~~l~~~~~~~~~~l~~l~~---~~~~~sIL~iDdiD~l~ 317 (473)
...+.|.||+|+|||+|+++|+..+.. .+..+. .+ +....+++.. -+.+|.++++||-..-+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~--~l-S~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFE--QL-SGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEc--cC-CHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 456899999999999999999998731 111111 01 2223333322 23589999999987544
No 363
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.15 E-value=0.0022 Score=62.04 Aligned_cols=37 Identities=30% Similarity=0.246 Sum_probs=27.6
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHh-c--CCceEEcc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY-L--NFDVYDLE 285 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~-l--~~~~~~l~ 285 (473)
|.+....+|++||||||||+++..++.+ + |.+++.++
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 6777888999999999999998765543 2 44554444
No 364
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.15 E-value=0.002 Score=60.59 Aligned_cols=63 Identities=21% Similarity=0.320 Sum_probs=39.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh-c----CCce--------------EEcccccc---------cCchHHHHHHHHhccC
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY-L----NFDV--------------YDLELTEL---------RSNSDLRTLLVATANR 305 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~-l----~~~~--------------~~l~~~~~---------~~~~~l~~l~~~~~~~ 305 (473)
.-++|.||.|+|||++++.++.- + |..+ ..+...+. .....+..++.....+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 46999999999999999999932 1 2111 11111110 0112344555555689
Q ss_pred ceEEEeccccc
Q 012016 306 SILVVEDIDCT 316 (473)
Q Consensus 306 sIL~iDdiD~l 316 (473)
.++++||.-.-
T Consensus 110 ~llllDEp~~g 120 (202)
T cd03243 110 SLVLIDELGRG 120 (202)
T ss_pred eEEEEecCCCC
Confidence 99999999654
No 365
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.14 E-value=0.00041 Score=71.25 Aligned_cols=44 Identities=27% Similarity=0.593 Sum_probs=38.3
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.++++..+++.+++.|.+. .+|+|+.||||.|||++|+|+|.++
T Consensus 244 ~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 244 LSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred echhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHH
Confidence 4789999999888887542 3599999999999999999999988
No 366
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.14 E-value=0.00039 Score=63.85 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=28.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
.+-++|.||||+|||+++++++..++.+++.++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 3568999999999999999999998877665443
No 367
>PRK04296 thymidine kinase; Provisional
Probab=97.14 E-value=0.0027 Score=59.28 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=23.5
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc---CCceEEc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL---NFDVYDL 284 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l---~~~~~~l 284 (473)
-.+++||||+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 47899999999999888877765 5555544
No 368
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.14 E-value=0.0025 Score=62.68 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=51.7
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC---CceEEcccc-cc--
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELT-EL-- 289 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~---~~~~~l~~~-~~-- 289 (473)
.+++++...++..+.+.+. +.. ....+++.||+|+|||++++++..++. ..++.++-. ++
T Consensus 57 ~~l~~lg~~~~~~~~l~~~----~~~----------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKL----LEK----------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHH----Hhc----------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 5688888777665554222 211 123589999999999999999988773 334443211 11
Q ss_pred --------cC--chHHHHHHHHh--ccCceEEEeccc
Q 012016 290 --------RS--NSDLRTLLVAT--ANRSILVVEDID 314 (473)
Q Consensus 290 --------~~--~~~l~~l~~~~--~~~sIL~iDdiD 314 (473)
.. ...+.+.+..+ .+|.+|++.|+.
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 10 11233444333 378999999994
No 369
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.13 E-value=0.0021 Score=59.01 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.5
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCC
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNF 279 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~ 279 (473)
-++|.||+|+|||++++.|++.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4899999999999999999997754
No 370
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.12 E-value=0.0015 Score=62.73 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=37.5
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---------CCceEEcccccccCchHHHHHHHH
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELTELRSNSDLRTLLVA 301 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---------~~~~~~l~~~~~~~~~~l~~l~~~ 301 (473)
|.+...-+.|+||||||||+++..+|... +..++.++...-.....+.++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~ 76 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAER 76 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHH
Confidence 56666779999999999999999887442 256777776654344555555443
No 371
>PRK14528 adenylate kinase; Provisional
Probab=97.11 E-value=0.00049 Score=63.98 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=27.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
.+++.||||+|||++++.+|..++++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999887654
No 372
>PF13479 AAA_24: AAA domain
Probab=97.10 E-value=0.0012 Score=62.85 Aligned_cols=60 Identities=32% Similarity=0.495 Sum_probs=38.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccc-------------ccCchHHHHHHHHh----ccCceEEEeccccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTE-------------LRSNSDLRTLLVAT----ANRSILVVEDIDCT 316 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~-------------~~~~~~l~~l~~~~----~~~sIL~iDdiD~l 316 (473)
-.++||||||+|||+++..+-+-+ +++++.+. +.+-..+.+.+... ..-..||||-++.+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l---~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPL---FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeE---EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 368999999999999999883322 22333321 12334555655443 24579999988866
No 373
>PRK02496 adk adenylate kinase; Provisional
Probab=97.10 E-value=0.00046 Score=63.83 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=26.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
+++.||||+|||++++.||..++++.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 88999999999999999999999887654
No 374
>PF13245 AAA_19: Part of AAA domain
Probab=97.09 E-value=0.00075 Score=53.31 Aligned_cols=33 Identities=42% Similarity=0.633 Sum_probs=22.3
Q ss_pred eeEEeCCCCCCHH-HHHHHHHHhc------CCceEEcccc
Q 012016 255 GYLLYGPPGTGKS-SLIAAMANYL------NFDVYDLELT 287 (473)
Q Consensus 255 g~LL~GPpGtGKT-~la~alA~~l------~~~~~~l~~~ 287 (473)
-+++.|||||||| ++++.++..+ +..+..+..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 4566999999999 4555666555 4456665544
No 375
>PRK13808 adenylate kinase; Provisional
Probab=97.09 E-value=0.0021 Score=64.94 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=26.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
|+|.||||+|||+++..||..++++.+.+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 89999999999999999999998866654
No 376
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.08 E-value=0.0028 Score=60.66 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=41.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHH-hc----CCc---------eE-----Ecccc-ccc--------CchHHHHHHHHhcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMAN-YL----NFD---------VY-----DLELT-ELR--------SNSDLRTLLVATAN 304 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~-~l----~~~---------~~-----~l~~~-~~~--------~~~~l~~l~~~~~~ 304 (473)
.+.++|.||.|+|||++.+.++. .+ |.. ++ .+... ++. .-.++..++..+.+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 35689999999999999999988 22 211 11 11111 111 11345666777788
Q ss_pred CceEEEecccc
Q 012016 305 RSILVVEDIDC 315 (473)
Q Consensus 305 ~sIL~iDdiD~ 315 (473)
+++++|||+..
T Consensus 111 ~sLvllDE~~~ 121 (222)
T cd03287 111 RSLVILDELGR 121 (222)
T ss_pred CeEEEEccCCC
Confidence 99999999964
No 377
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.08 E-value=0.002 Score=60.54 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHH
Q 012016 254 RGYLLYGPPGTGKSSLIAAMA 274 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA 274 (473)
+.++|.||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 378
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.08 E-value=0.00046 Score=63.64 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=26.6
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
-+++.||||+||||+++.++..+|+..+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 588999999999999999999998776544
No 379
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0029 Score=58.29 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-.+.+.||.|+|||||.+.+|.-+
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHccc
Confidence 3458999999999999999999877
No 380
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.07 E-value=0.00083 Score=68.30 Aligned_cols=113 Identities=23% Similarity=0.256 Sum_probs=66.5
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHHHhccCceEEEeccccccccccCCccccC
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIA 328 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~ 328 (473)
|+|.+..++|||||+||||+++-.+-+.++-.++..--+. + +-.+.-....-|-+|||+-.-.
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~----S--hFWLqPL~d~Ki~llDDAT~~c----------- 320 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK----S--HFWLQPLADAKIALLDDATYPC----------- 320 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTT----S--CGGGGGGCT-SSEEEEEE-HHH-----------
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCC----C--cccccchhcCcEEEEcCCcccH-----------
Confidence 7788899999999999999999999999988877532211 1 1123344566789999985321
Q ss_pred CCCCCCccchhHHH-HHHHHHhcccccC----CCC-----ceEEEEecCCCCCCCccc---cCCCceeeEEEeCCC
Q 012016 329 GEGEGPIQQNKVTL-SGFLNFIDGLWSS----CGD-----ERIIVFTTNHKEKLDPAL---LRPGRMDVHVHMSYC 391 (473)
Q Consensus 329 ~~~~~~~~~~~~~l-s~LL~~ldg~~~~----~~~-----~~iiI~tTN~~~~ld~aL---lrpgRfd~~I~~~~p 391 (473)
-.-+ ..|-|.+||-.-+ ... ---++.|||.-=.-++.+ .+ |+ ..++|+.|
T Consensus 321 ----------W~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhS--Ri-~~f~F~n~ 383 (432)
T PF00519_consen 321 ----------WDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHS--RI-TCFEFPNP 383 (432)
T ss_dssp ----------HHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCT--TE-EEEE--S-
T ss_pred ----------HHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhh--eE-EEEEcCCc
Confidence 1222 3355888874110 000 013677888654444443 35 77 46777765
No 381
>PLN02199 shikimate kinase
Probab=97.06 E-value=0.0011 Score=65.55 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=31.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
.++++|.|++|+|||++++.+|+.+++++++.|.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 4689999999999999999999999999998873
No 382
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.04 E-value=0.007 Score=56.77 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=24.3
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
++.-+.|.||+|+|||+|++.|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456799999999999999999999876
No 383
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.04 E-value=0.00061 Score=65.55 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=28.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.++|.||||+|||++++.+|+.++++++.++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 3999999999999999999999998887665
No 384
>PLN02200 adenylate kinase family protein
Probab=97.02 E-value=0.00073 Score=65.26 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=26.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceE
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~ 282 (473)
+.-+++.||||+|||++++.||..+|++.+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 456899999999999999999999987653
No 385
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.02 E-value=0.0028 Score=71.54 Aligned_cols=63 Identities=13% Similarity=0.323 Sum_probs=39.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc-----CCc----------eEEcccccccC--------------chHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL-----NFD----------VYDLELTELRS--------------NSDLRTLLVATA 303 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l-----~~~----------~~~l~~~~~~~--------------~~~l~~l~~~~~ 303 (473)
.+.++|.||.+.|||++++.++-.. |.+ +++--...+.+ ...+..++..+.
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~ 406 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKAD 406 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCC
Confidence 3578999999999999999887432 322 22111111111 122334455556
Q ss_pred cCceEEEecccc
Q 012016 304 NRSILVVEDIDC 315 (473)
Q Consensus 304 ~~sIL~iDdiD~ 315 (473)
.+++++|||+..
T Consensus 407 ~~sLvLlDE~~~ 418 (782)
T PRK00409 407 KNSLVLFDELGA 418 (782)
T ss_pred cCcEEEecCCCC
Confidence 899999999964
No 386
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.00 E-value=0.00065 Score=64.34 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=26.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
+++.||||+|||++++.||..+|++.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999999877654
No 387
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.00 E-value=0.0027 Score=71.47 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=21.2
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
+.++|.||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 57999999999999999999876
No 388
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.98 E-value=0.00076 Score=64.12 Aligned_cols=29 Identities=28% Similarity=0.498 Sum_probs=26.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
|+++||||+|||++++.||..++++.+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999887765
No 389
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.0026 Score=58.14 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.3
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+..-+.|.||+|+|||+|+++|+..+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34569999999999999999999986
No 390
>PRK06696 uridine kinase; Validated
Probab=96.97 E-value=0.0022 Score=61.33 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=32.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR 290 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~ 290 (473)
+.-|.+.|++|+||||+++.|+..| |.+++.+.+.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4568999999999999999999999 6778777766654
No 391
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.97 E-value=0.001 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHhc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l 277 (473)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999996
No 392
>PRK13695 putative NTPase; Provisional
Probab=96.94 E-value=0.0063 Score=55.71 Aligned_cols=23 Identities=39% Similarity=0.742 Sum_probs=20.5
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
.++|.|++|+|||++++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988775
No 393
>PRK04182 cytidylate kinase; Provisional
Probab=96.93 E-value=0.0008 Score=61.47 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=27.4
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
-+.|.|+||||||++++.+|..+|+++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 378999999999999999999999998863
No 394
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.00071 Score=61.35 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=27.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
-+++.|.|||||||+++.|+ .+|++++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 9999988765
No 395
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.93 E-value=0.0028 Score=58.87 Aligned_cols=61 Identities=13% Similarity=0.284 Sum_probs=38.3
Q ss_pred eEEeCCCCCCHHHHHHHHHH-h----cCCce---------E-----Eccccccc---------CchHHHHHHHHhccCce
Q 012016 256 YLLYGPPGTGKSSLIAAMAN-Y----LNFDV---------Y-----DLELTELR---------SNSDLRTLLVATANRSI 307 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~-~----l~~~~---------~-----~l~~~~~~---------~~~~l~~l~~~~~~~sI 307 (473)
++|.||.|+|||++++.++- . .|..+ + .+...+.. .-..+..++..+..+++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 2 23222 1 11111110 11234455555568999
Q ss_pred EEEeccccc
Q 012016 308 LVVEDIDCT 316 (473)
Q Consensus 308 L~iDdiD~l 316 (473)
+++||...-
T Consensus 82 lllDEp~~g 90 (185)
T smart00534 82 VLLDELGRG 90 (185)
T ss_pred EEEecCCCC
Confidence 999999754
No 396
>PRK14527 adenylate kinase; Provisional
Probab=96.93 E-value=0.00078 Score=62.79 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=27.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
+.-+++.||||+|||++++.+|..+++..+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 34699999999999999999999998766543
No 397
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.93 E-value=0.036 Score=55.79 Aligned_cols=99 Identities=12% Similarity=0.076 Sum_probs=52.6
Q ss_pred CceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEE-EEecCC---CC--CCCccccC
Q 012016 305 RSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERII-VFTTNH---KE--KLDPALLR 378 (473)
Q Consensus 305 ~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ii-I~tTN~---~~--~ld~aLlr 378 (473)
|.++.||++.+++....-.... ...-+...-.....|++++.|-.+-..+.+++ +.+|.. +. .++.+|..
T Consensus 157 PVL~avD~~n~l~~~S~Y~~~~----~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~ 232 (309)
T PF10236_consen 157 PVLVAVDGFNALFGPSAYRDPD----FKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGG 232 (309)
T ss_pred ceEEEehhhHHhhCCccccCCC----CccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhcc
Confidence 6788999999998632211110 01112223344555666655443322222332 444332 22 45555553
Q ss_pred -CCc-----ee-------------eEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 379 -PGR-----MD-------------VHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 379 -pgR-----fd-------------~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+++ |. ..|+++..+.++...++..|....
T Consensus 233 ~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~ 280 (309)
T PF10236_consen 233 KEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSG 280 (309)
T ss_pred ccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCC
Confidence 111 11 167899999999999999887643
No 398
>PRK09354 recA recombinase A; Provisional
Probab=96.92 E-value=0.0038 Score=63.52 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=43.7
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc---------------------CchHHHHHHH---H
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR---------------------SNSDLRTLLV---A 301 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~---------------------~~~~l~~l~~---~ 301 (473)
|.|..+-+++|||||||||+|+..++... |...++++...-. +.+....++. .
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56666779999999999999988665432 5555555543310 1111111221 2
Q ss_pred hccCceEEEeccccccc
Q 012016 302 TANRSILVVEDIDCTID 318 (473)
Q Consensus 302 ~~~~sIL~iDdiD~l~~ 318 (473)
.....+||||-+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 23578999999998864
No 399
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.92 E-value=0.0035 Score=59.28 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHH
Q 012016 254 RGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~ 275 (473)
+-++|.||.|+|||++++.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999874
No 400
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.90 E-value=0.00083 Score=60.90 Aligned_cols=30 Identities=27% Similarity=0.583 Sum_probs=27.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
+.+.|++|+|||++++.+|+.++++++..+
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~~ 32 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISAG 32 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecHH
Confidence 789999999999999999999999987653
No 401
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.89 E-value=0.0045 Score=63.78 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..+|+.||+|+|||++++++.+++
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999877
No 402
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.89 E-value=0.0038 Score=57.18 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||+|+|||+|+++|+..+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3458999999999999999999976
No 403
>PRK01184 hypothetical protein; Provisional
Probab=96.89 E-value=0.00094 Score=61.69 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.4
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
-++|.||||+||||+++ ++..+|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999887 889999888765
No 404
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.89 E-value=0.024 Score=54.76 Aligned_cols=126 Identities=22% Similarity=0.219 Sum_probs=70.9
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCc---eEEccccccc-------------C-------------chHHHHHHHHhccC
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELTELR-------------S-------------NSDLRTLLVATANR 305 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~---~~~l~~~~~~-------------~-------------~~~l~~l~~~~~~~ 305 (473)
-+.++|+.|||||.+.+|+..-++-+ ++.++...+. . ...|.+++..-.++
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 36889999999999999887776422 2233322221 0 12233333344467
Q ss_pred ceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCcc--------cc
Q 012016 306 SILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPA--------LL 377 (473)
Q Consensus 306 sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~a--------Ll 377 (473)
.++++||.+.+.. ..-..+.-|.|.-++.. ..-.+++|+=. +|.|. +.
T Consensus 133 v~l~vdEah~L~~------------------~~le~Lrll~nl~~~~~--~~l~ivL~Gqp----~L~~~lr~~~l~e~~ 188 (269)
T COG3267 133 VVLMVDEAHDLND------------------SALEALRLLTNLEEDSS--KLLSIVLIGQP----KLRPRLRLPVLRELE 188 (269)
T ss_pred eEEeehhHhhhCh------------------hHHHHHHHHHhhccccc--CceeeeecCCc----ccchhhchHHHHhhh
Confidence 9999999998742 11222222233222211 11123344322 12222 23
Q ss_pred CCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 378 RPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 378 rpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
. |++..|++++.+.++-...++..++.
T Consensus 189 ~--R~~ir~~l~P~~~~~t~~yl~~~Le~ 215 (269)
T COG3267 189 Q--RIDIRIELPPLTEAETGLYLRHRLEG 215 (269)
T ss_pred h--eEEEEEecCCcChHHHHHHHHHHHhc
Confidence 4 99988999999999777777766653
No 405
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.87 E-value=0.0045 Score=56.89 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
...+.|.||+|+|||+|+++|+..+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4568999999999999999999976
No 406
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.87 E-value=0.00067 Score=58.09 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=21.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHhc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l 277 (473)
|+|.|+||+||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 407
>PLN02459 probable adenylate kinase
Probab=96.86 E-value=0.0035 Score=61.21 Aligned_cols=30 Identities=20% Similarity=0.463 Sum_probs=26.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
.++|.||||+|||++++.+|..++++.+..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 488899999999999999999998766543
No 408
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.86 E-value=0.01 Score=59.65 Aligned_cols=28 Identities=32% Similarity=0.319 Sum_probs=24.7
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
..+..+-|+||=|+|||++++.+-+.+.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999988874
No 409
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.85 E-value=0.0057 Score=64.83 Aligned_cols=69 Identities=25% Similarity=0.287 Sum_probs=45.3
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc--------------------CchHHHHHHHHh--c
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR--------------------SNSDLRTLLVAT--A 303 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~--------------------~~~~l~~l~~~~--~ 303 (473)
|.++..-+||+|+||+|||+|+..+|..+ +.++++++..+-. ....+..+.... .
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 56666779999999999999999887755 3466555543210 111222222222 3
Q ss_pred cCceEEEecccccc
Q 012016 304 NRSILVVEDIDCTI 317 (473)
Q Consensus 304 ~~sIL~iDdiD~l~ 317 (473)
++.+||||.|..+.
T Consensus 170 ~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 170 NPQACVIDSIQTLY 183 (454)
T ss_pred CCcEEEEecchhhc
Confidence 67899999998764
No 410
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.0028 Score=57.72 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=33.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTEL 289 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~ 289 (473)
+..+.|.|.+|+|||++|.|+...| |+.+|.+|...+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 4568899999999999999999988 899999998776
No 411
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.84 E-value=0.0042 Score=58.29 Aligned_cols=121 Identities=21% Similarity=0.326 Sum_probs=67.5
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc--------------------------C-----------CceEEcccccccC
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL--------------------------N-----------FDVYDLELTELRS 291 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l--------------------------~-----------~~~~~l~~~~~~~ 291 (473)
|+|.+.=+++.|+.|||||.|.+-+|-=+ + +.++.++...+..
T Consensus 24 GiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~ 103 (235)
T COG2874 24 GIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNW 103 (235)
T ss_pred CCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccccc
Confidence 35666668999999999999999888533 1 2233343333322
Q ss_pred chH-----HHHHHHH--hccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 292 NSD-----LRTLLVA--TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 292 ~~~-----l~~l~~~--~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
+.. |..++.. ..+..|++||-+..+.. . ........+++.+..+.+ .+.+||+
T Consensus 104 ~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~----------------~-~~~~~vl~fm~~~r~l~d---~gKvIil 163 (235)
T COG2874 104 GRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFAT----------------Y-DSEDAVLNFMTFLRKLSD---LGKVIIL 163 (235)
T ss_pred ChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhh----------------c-ccHHHHHHHHHHHHHHHh---CCCEEEE
Confidence 222 2222222 23678999999987753 1 122333444444444432 3455555
Q ss_pred ecCCCCCCCccccCC--CceeeEEEeCC
Q 012016 365 TTNHKEKLDPALLRP--GRMDVHVHMSY 390 (473)
Q Consensus 365 tTN~~~~ld~aLlrp--gRfd~~I~~~~ 390 (473)
|. ||..++++++-+ .-+|.++++..
T Consensus 164 Tv-hp~~l~e~~~~rirs~~d~~l~L~~ 190 (235)
T COG2874 164 TV-HPSALDEDVLTRIRSACDVYLRLRL 190 (235)
T ss_pred Ee-ChhhcCHHHHHHHHHhhheeEEEEh
Confidence 55 567788776530 13455555543
No 412
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.83 E-value=0.00099 Score=70.81 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=43.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEccccc--cc------CchHHHHHHHH-----hccCceEEEecccccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTE--LR------SNSDLRTLLVA-----TANRSILVVEDIDCTI 317 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~--~~------~~~~l~~l~~~-----~~~~sIL~iDdiD~l~ 317 (473)
++||+|.||||||-+.+.+++-....++..-... ++ .+.--++.-.. .+.++|.+|||+|.+-
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMn 559 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMN 559 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhc
Confidence 4999999999999999999999887777543222 11 11101111111 2478999999999984
No 413
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.82 E-value=0.015 Score=58.80 Aligned_cols=34 Identities=24% Similarity=0.185 Sum_probs=27.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
+.-++|.||+|+||||++..||..+ +..+..+++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4568999999999999999999987 445554444
No 414
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.82 E-value=0.0019 Score=63.75 Aligned_cols=61 Identities=21% Similarity=0.371 Sum_probs=34.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc----------CchHHHHHHHH-----hccCceEEEeccccc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR----------SNSDLRTLLVA-----TANRSILVVEDIDCT 316 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~----------~~~~l~~l~~~-----~~~~sIL~iDdiD~l 316 (473)
++|+|.||+|||++++.|+.++ +..+..++...+. .+..++..+.. .....||++||.-.+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 7999999999999999999986 5666666543331 12333333322 245689999998755
No 415
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.82 E-value=0.0015 Score=56.44 Aligned_cols=64 Identities=25% Similarity=0.336 Sum_probs=40.0
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCC--------------------ceEEcccccccCchHHHHH--HHHhccCceEEE
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNF--------------------DVYDLELTELRSNSDLRTL--LVATANRSILVV 310 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~--------------------~~~~l~~~~~~~~~~l~~l--~~~~~~~sIL~i 310 (473)
..-++|+|+=|+|||++++++|..+|. +++.+|+=.+.+..++..+ +......+|.+|
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~I 94 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICVI 94 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEEE
Confidence 456999999999999999999999953 3344444444444443332 122345778887
Q ss_pred eccccc
Q 012016 311 EDIDCT 316 (473)
Q Consensus 311 DdiD~l 316 (473)
|=.+.+
T Consensus 95 EW~e~~ 100 (123)
T PF02367_consen 95 EWPERL 100 (123)
T ss_dssp ESGGGG
T ss_pred ECcccc
Confidence 755544
No 416
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.81 E-value=0.0069 Score=61.41 Aligned_cols=127 Identities=22% Similarity=0.342 Sum_probs=76.0
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC----------------------------chHHHHHHHHh-
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS----------------------------NSDLRTLLVAT- 302 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~----------------------------~~~l~~l~~~~- 302 (473)
.|..+.|||-.|||||.+++.+-+.++.+...+++-+.-+ -..+..+|...
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~ 108 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWP 108 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhH
Confidence 3567899999999999999999999988877766543211 01222333331
Q ss_pred --c---cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCC-CCCCCccc
Q 012016 303 --A---NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNH-KEKLDPAL 376 (473)
Q Consensus 303 --~---~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~-~~~ld~aL 376 (473)
+ +...|++|.+|.+-+ .....+..|+..-.-+ . ...+.|...-. .++ --+
T Consensus 109 ~~t~~d~~~~liLDnad~lrD------------------~~a~ll~~l~~L~el~-~---~~~i~iils~~~~e~--~y~ 164 (438)
T KOG2543|consen 109 AATNRDQKVFLILDNADALRD------------------MDAILLQCLFRLYELL-N---EPTIVIILSAPSCEK--QYL 164 (438)
T ss_pred HhhccCceEEEEEcCHHhhhc------------------cchHHHHHHHHHHHHh-C---CCceEEEEeccccHH--Hhh
Confidence 1 346889999998842 2345556555432222 1 12333333322 111 112
Q ss_pred cCCCcee-eEEEeCCCCHHHHHHHHHH
Q 012016 377 LRPGRMD-VHVHMSYCTPSGFKLLAAN 402 (473)
Q Consensus 377 lrpgRfd-~~I~~~~p~~~~r~~l~~~ 402 (473)
.+-|-++ ..++||.++.++..+|+.+
T Consensus 165 ~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 165 INTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred cccCCCCceEEecCCCCHHHHHHHHhc
Confidence 2234443 5789999999998888764
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.80 E-value=0.0041 Score=59.29 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHH
Q 012016 254 RGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~ 275 (473)
+-++|.||.|+|||++.+.+|.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4689999999999999999874
No 418
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.80 E-value=0.0021 Score=54.90 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
++++++||+|+|||.++.+.+..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888777665
No 419
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.79 E-value=0.0061 Score=61.19 Aligned_cols=62 Identities=19% Similarity=0.345 Sum_probs=41.0
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhcCCceEE----cccccccCchHHHHHHHHhccCceEEEecccc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD----LELTELRSNSDLRTLLVATANRSILVVEDIDC 315 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~----l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~ 315 (473)
+....++|+|+.|+|||+++..|...+|-.... +.+.++.+. . ..+.....+-+++.+|++.
T Consensus 74 ~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~-~--f~~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 74 TEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH-R--FGLARLEGKRAVIGDEVQK 139 (304)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC-C--chhhhhcCCEEEEecCCCC
Confidence 445679999999999999999999988754322 222222111 1 1223345678889999863
No 420
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.79 E-value=0.00094 Score=60.46 Aligned_cols=26 Identities=38% Similarity=0.653 Sum_probs=21.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceE
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVY 282 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~ 282 (473)
|.|.|+||||||+|+++|+.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999999 88876
No 421
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.78 E-value=0.0015 Score=60.67 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=27.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
..+.|.||+|+||||+++.|+..++.+++..+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~ 34 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAH 34 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcC
Confidence 36899999999999999999999887665433
No 422
>PRK04328 hypothetical protein; Provisional
Probab=96.78 E-value=0.0075 Score=58.78 Aligned_cols=40 Identities=30% Similarity=0.277 Sum_probs=31.5
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHh---cCCceEEccccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLELTE 288 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~---l~~~~~~l~~~~ 288 (473)
|.|....+|++||||||||.|+..++.+ -|.+.+.++..+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 5677778999999999999998865543 267788887655
No 423
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.77 E-value=0.0058 Score=59.56 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=23.9
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNF 279 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~ 279 (473)
..-++|.||+|+|||+|++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 345899999999999999999998864
No 424
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.76 E-value=0.0013 Score=65.58 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=26.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc-CCceEEc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL-NFDVYDL 284 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l-~~~~~~l 284 (473)
.-+++.||||||||++++.++..+ +..++..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 468999999999999999999999 6655554
No 425
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.76 E-value=0.00098 Score=59.56 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=23.5
Q ss_pred EeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 258 LYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 258 L~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
|.||||+|||++++.||..+|+..+.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceech
Confidence 579999999999999999998765543
No 426
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.76 E-value=0.0041 Score=64.15 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
.-++|.||||+|||+|++.+++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 3489999999999999999999863
No 427
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.75 E-value=0.012 Score=68.93 Aligned_cols=130 Identities=17% Similarity=0.207 Sum_probs=81.3
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC------------chHH--H--HHHHHhccCceEEEeccccccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS------------NSDL--R--TLLVATANRSILVVEDIDCTID 318 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~------------~~~l--~--~l~~~~~~~sIL~iDdiD~l~~ 318 (473)
.+|+.||..+|||+++..+|.+.|..++.++-.+..+ +..| + -+.....++--|++||+.-..
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLAp- 968 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAP- 968 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCc-
Confidence 3899999999999999999999999999988654311 1111 1 123344577899999996432
Q ss_pred cccCCccccCCCCCCCccchhHHHHHHHHHhcccc-------cCCCCceEEEEecCCCC------CCCccccCCCceeeE
Q 012016 319 LQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW-------SSCGDERIIVFTTNHKE------KLDPALLRPGRMDVH 385 (473)
Q Consensus 319 ~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-------~~~~~~~iiI~tTN~~~------~ld~aLlrpgRfd~~ 385 (473)
...-..++.||.--..+. -.+.++..+++|-|.|. .|..|++. || ..
T Consensus 969 -----------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE 1028 (4600)
T COG5271 969 -----------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LE 1028 (4600)
T ss_pred -----------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hh
Confidence 122334444442111110 01223456667777764 46678877 88 45
Q ss_pred EEeCCCCHHHHHHHHHHHhC
Q 012016 386 VHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 386 I~~~~p~~~~r~~l~~~~l~ 405 (473)
++|..-..++...|+.....
T Consensus 1029 ~hFddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1029 MHFDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred hhcccCcHHHHHHHHhccCc
Confidence 67776667777777764443
No 428
>PRK14526 adenylate kinase; Provisional
Probab=96.74 E-value=0.0015 Score=62.13 Aligned_cols=28 Identities=32% Similarity=0.704 Sum_probs=25.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEE
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~ 283 (473)
++|.||||+|||++++.+|..++++.+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999877654
No 429
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.74 E-value=0.0035 Score=61.33 Aligned_cols=65 Identities=23% Similarity=0.361 Sum_probs=53.0
Q ss_pred CceeEEeCCCCCCHHHHHHHHHH------hcCCceEEcccccccCchHHHHHHHHh-----------------ccCceEE
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMAN------YLNFDVYDLELTELRSNSDLRTLLVAT-----------------ANRSILV 309 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~------~l~~~~~~l~~~~~~~~~~l~~l~~~~-----------------~~~sIL~ 309 (473)
...+||.||.|.|||.|++-+-. .+.-+++.++|..+.++..+..+|-.. ..+..||
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 34699999999999999998764 457789999999998887777776543 2568999
Q ss_pred Eecccccc
Q 012016 310 VEDIDCTI 317 (473)
Q Consensus 310 iDdiD~l~ 317 (473)
+|||..+.
T Consensus 288 ldeigelg 295 (531)
T COG4650 288 LDEIGELG 295 (531)
T ss_pred hHhhhhcC
Confidence 99998874
No 430
>PHA00350 putative assembly protein
Probab=96.73 E-value=0.0048 Score=63.79 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=61.6
Q ss_pred eeEEeCCCCCCHHHHHHH--HHHhc--CCceEEccccccc--------------------Cc------hHHHHHHHHhcc
Q 012016 255 GYLLYGPPGTGKSSLIAA--MANYL--NFDVYDLELTELR--------------------SN------SDLRTLLVATAN 304 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~a--lA~~l--~~~~~~l~~~~~~--------------------~~------~~l~~l~~~~~~ 304 (473)
-++++|+||+|||..+-. |-.++ |.+++. +...+. .. ......+...+.
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p~ 81 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLNLDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRPR 81 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHhhcccCcccceeEEeccccccchhhhccccccCCC
Confidence 368999999999997664 43333 665552 322111 00 011111222457
Q ss_pred CceEEEeccccccccccCCccccCCC-CCCC-----ccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccC
Q 012016 305 RSILVVEDIDCTIDLQDRLPADIAGE-GEGP-----IQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLR 378 (473)
Q Consensus 305 ~sIL~iDdiD~l~~~~~r~~~~~~~~-~~~~-----~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlr 378 (473)
.++|||||+..+++.+...+....-. ..+. .......+..|. .. ...+.=||++|.++..||..++.
T Consensus 82 gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~-~H------RH~G~DIiliTQ~~~~Id~~iR~ 154 (399)
T PHA00350 82 GALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFM-RH------RHYNWDIILLTPNIRKIHSDIRA 154 (399)
T ss_pred CCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHH-Hh------cccCceEEEEeCCHHHhhHHHHH
Confidence 89999999999987432211100000 0000 001112222222 11 11234588899999999988765
Q ss_pred CCceee
Q 012016 379 PGRMDV 384 (473)
Q Consensus 379 pgRfd~ 384 (473)
++++
T Consensus 155 --lvE~ 158 (399)
T PHA00350 155 --MIEM 158 (399)
T ss_pred --hhhh
Confidence 5554
No 431
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.73 E-value=0.0024 Score=66.55 Aligned_cols=169 Identities=18% Similarity=0.140 Sum_probs=93.8
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCC--CCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc--c-CchH
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKA--WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL--R-SNSD 294 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~--~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~--~-~~~~ 294 (473)
+|.|..++|+.++-.|. .+...-..-|.. -.-+++|.|.||..||-|.+.+.+.....+|..--.+- . +..-
T Consensus 343 EIyGheDVKKaLLLlLV---Ggvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLV---GGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhh---CCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 57788888988765544 221111111111 12358999999999999999999988777776443321 1 1111
Q ss_pred HHHHH------H----HhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 295 LRTLL------V----ATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 295 l~~l~------~----~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
++.-+ . -....+|.+|||+|.+.. .+|..-... ..++++|--- .|+..+-....-|++
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e-~DRtAIHEV--------MEQQTISIaK---AGI~TtLNAR~sILa 487 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDE-SDRTAIHEV--------MEQQTISIAK---AGINTTLNARTSILA 487 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhhh-hhhHHHHHH--------HHhhhhhhhh---hccccchhhhHHhhh
Confidence 11100 0 123678999999998853 122111000 0111111000 122222223355777
Q ss_pred ecCCCC-------------CCCccccCCCceeeEEE-eCCCCHHHHHHHHHHHhC
Q 012016 365 TTNHKE-------------KLDPALLRPGRMDVHVH-MSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 365 tTN~~~-------------~ld~aLlrpgRfd~~I~-~~~p~~~~r~~l~~~~l~ 405 (473)
+.|... .|++||+. |||...- ...|+.+.=..|+++..-
T Consensus 488 AANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTy 540 (721)
T KOG0482|consen 488 AANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITY 540 (721)
T ss_pred hcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHh
Confidence 777531 57899999 9996544 355888877778877543
No 432
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.72 E-value=0.0015 Score=58.49 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=25.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHhc---CCceEEcc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l---~~~~~~l~ 285 (473)
+++.|+||+|||++++.++..+ +.+.+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6899999999999999999998 66666554
No 433
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.71 E-value=0.0014 Score=61.52 Aligned_cols=35 Identities=37% Similarity=0.553 Sum_probs=27.6
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL 289 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~ 289 (473)
-++|+||+|||||.++-++|+.+|.|++..|--..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 47999999999999999999999999999885543
No 434
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.71 E-value=0.0016 Score=60.15 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=24.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD 280 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~ 280 (473)
+|-++|.||+|+|||+|++.|+....-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~ 29 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK 29 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc
Confidence 4679999999999999999999987543
No 435
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.71 E-value=0.0014 Score=58.24 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=34.3
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHH
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLR 296 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~ 296 (473)
+.+-.+++-|++|||||+++++++.+|+.+|++-| ++...++..
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgD--d~Hp~~Nve 53 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGD--DLHPPANVE 53 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccc--cCCCHHHHH
Confidence 44557899999999999999999999999887644 444444443
No 436
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.71 E-value=0.011 Score=66.30 Aligned_cols=63 Identities=24% Similarity=0.306 Sum_probs=40.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc---C--CceEEcccccc----------cCchHHHHHHHHh------------ccCc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL---N--FDVYDLELTEL----------RSNSDLRTLLVAT------------ANRS 306 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l---~--~~~~~l~~~~~----------~~~~~l~~l~~~~------------~~~s 306 (473)
+-.+|.|+||||||++++++...+ + .+++.+..+.. .....+++++... ....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 468999999999999999987765 4 45554433221 0123445555321 1347
Q ss_pred eEEEeccccc
Q 012016 307 ILVVEDIDCT 316 (473)
Q Consensus 307 IL~iDdiD~l 316 (473)
+|+|||+-.+
T Consensus 419 llIvDEaSMv 428 (720)
T TIGR01448 419 LLIVDESSMM 428 (720)
T ss_pred EEEEeccccC
Confidence 9999999755
No 437
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.002 Score=60.09 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.7
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
-++|.|+||+|||++++-+|++|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 37899999999999999999999
No 438
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.68 E-value=0.01 Score=54.76 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.5
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHH
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~ 275 (473)
...-+.|.||.|+|||||.+++..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 345689999999999999999964
No 439
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.0089 Score=54.68 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
...+.|.||+|+|||+|++.||..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999976
No 440
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.67 E-value=0.0041 Score=67.16 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=24.1
Q ss_pred CCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 250 KAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 250 ~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.+++..+|+.||+|||||+|.+|||.-.
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3445569999999999999999999865
No 441
>PRK10646 ADP-binding protein; Provisional
Probab=96.65 E-value=0.011 Score=53.11 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNF 279 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~ 279 (473)
..-++|.|+=|+|||++++++++.+|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 346899999999999999999999964
No 442
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.65 E-value=0.0067 Score=64.97 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=24.6
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
|.+....+|+.||||||||+|+..++...
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~ 287 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENA 287 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56667779999999999999998877755
No 443
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.64 E-value=0.0016 Score=63.33 Aligned_cols=32 Identities=41% Similarity=0.565 Sum_probs=26.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHhc---CCceEEcccc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~ 287 (473)
++|.|+||+|||+++++++..+ +.+++.++..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D 36 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTD 36 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccH
Confidence 6899999999999999999988 4666666543
No 444
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.63 E-value=0.0023 Score=64.08 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=23.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
++++++.||+|+|||++++++++++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 445
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.03 Score=58.37 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=27.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc----CCceEEccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELTE 288 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l----~~~~~~l~~~~ 288 (473)
+.-++|.||+|+|||+++..||..+ |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 3458899999999999999999754 45565555444
No 446
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.63 E-value=0.0048 Score=58.55 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=21.6
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
-+.|+.||||||||++.+-+|+-+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHh
Confidence 368999999999999999999876
No 447
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=96.62 E-value=0.0078 Score=64.24 Aligned_cols=65 Identities=26% Similarity=0.446 Sum_probs=42.4
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhcCC-ceEEcccccccCchHHHHHHHHhccCceEEEecccc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNF-DVYDLELTELRSNSDLRTLLVATANRSILVVEDIDC 315 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l~~-~~~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~ 315 (473)
.|...+.|+||-|+|||+++..|.+.+|. .+..+....+.....=+..+...-...++..+|.+.
T Consensus 228 ~~~k~~~l~G~G~nGKstf~~li~~llG~~n~~s~~~~~~~~~~~~~~~~A~Lvg~~~v~~~E~~k 293 (517)
T COG3378 228 SEQKLFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTDLEADDRHPFGLAALVGKRLVTVSETEK 293 (517)
T ss_pred cceeEEEEEcCCCCChHHHHHHHHHHhccchhccccHHHhhhhccCcchHHHhhCceEEEecCccc
Confidence 46678999999999999999999999974 444555554432111112222334566777777654
No 448
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.62 E-value=0.0063 Score=61.46 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=38.6
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---------CCceEEcccccccCchHHHHHHHH
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELTELRSNSDLRTLLVA 301 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---------~~~~~~l~~~~~~~~~~l~~l~~~ 301 (473)
|++...-++++||||||||.++..+|-.. +..+++++...-.....+.+....
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~ 159 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEA 159 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHH
Confidence 56666778999999999999999888552 347788887664445566655543
No 449
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.61 E-value=0.0085 Score=66.72 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=24.0
Q ss_pred CCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 250 KAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 250 ~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+++..-+-+.|++|||||||++.|.+.+
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444459999999999999999999977
No 450
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.60 E-value=0.011 Score=57.02 Aligned_cols=97 Identities=13% Similarity=0.297 Sum_probs=54.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc-----CCce---------E-----Ecccc-ccc--------CchHHHHHHHHhccC
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL-----NFDV---------Y-----DLELT-ELR--------SNSDLRTLLVATANR 305 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l-----~~~~---------~-----~l~~~-~~~--------~~~~l~~l~~~~~~~ 305 (473)
+.++|.||..+|||++++.+|-.. |..+ + .+... ++. .-..+..++..+.++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 578999999999999999988643 3211 1 11111 111 124566777777889
Q ss_pred ceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCC
Q 012016 306 SILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEK 371 (473)
Q Consensus 306 sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ 371 (473)
++|+|||+-.-.. ..+.......+++.+-. . .+..+|+||+..+-
T Consensus 124 sLvliDE~g~gT~----------------~~eg~ai~~aile~l~~---~--~~~~~i~~TH~~~l 168 (235)
T PF00488_consen 124 SLVLIDELGRGTN----------------PEEGIAIAIAILEYLLE---K--SGCFVIIATHFHEL 168 (235)
T ss_dssp EEEEEESTTTTSS----------------HHHHHHHHHHHHHHHHH---T--TT-EEEEEES-GGG
T ss_pred eeeecccccCCCC----------------hhHHHHHHHHHHHHHHH---h--ccccEEEEeccchh
Confidence 9999999964211 12223333444444432 1 12567888887653
No 451
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.60 E-value=0.0086 Score=57.17 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=41.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc-----CC---------ceE-----Eccccc-cc--------CchHHHHHHHHhcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL-----NF---------DVY-----DLELTE-LR--------SNSDLRTLLVATAN 304 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l-----~~---------~~~-----~l~~~~-~~--------~~~~l~~l~~~~~~ 304 (473)
.+.++|.||.|.|||++.+.++... |. +++ .+...+ +. .-.++..++..+..
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 4578999999999999999887643 21 111 111111 11 11345567777789
Q ss_pred CceEEEecccc
Q 012016 305 RSILVVEDIDC 315 (473)
Q Consensus 305 ~sIL~iDdiD~ 315 (473)
+++++|||+..
T Consensus 110 ~sLvLlDE~~~ 120 (218)
T cd03286 110 DSLVILDELGR 120 (218)
T ss_pred CeEEEEecccC
Confidence 99999999864
No 452
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.60 E-value=0.0072 Score=62.29 Aligned_cols=27 Identities=44% Similarity=0.742 Sum_probs=24.0
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNF 279 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~ 279 (473)
+..+++.||.|||||+++++|.+.+..
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 568899999999999999999998843
No 453
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.58 E-value=0.011 Score=58.12 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=22.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
...+.|.||+|+|||+|+++|+..+
T Consensus 50 Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4458999999999999999999976
No 454
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.58 E-value=0.013 Score=62.51 Aligned_cols=64 Identities=23% Similarity=0.303 Sum_probs=42.8
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEccccc--c--------------------cCchHHHHHHHHhcc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELTE--L--------------------RSNSDLRTLLVATAN 304 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~~~~--~--------------------~~~~~l~~l~~~~~~ 304 (473)
+...+.|.||+|+|||+++..||..+ +..+..++... . .....+...+....+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 35678999999999999999998754 23343333221 1 122456666666667
Q ss_pred CceEEEecccc
Q 012016 305 RSILVVEDIDC 315 (473)
Q Consensus 305 ~sIL~iDdiD~ 315 (473)
..+||||....
T Consensus 429 ~DLVLIDTaG~ 439 (559)
T PRK12727 429 YKLVLIDTAGM 439 (559)
T ss_pred CCEEEecCCCc
Confidence 78889888854
No 455
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.58 E-value=0.002 Score=59.87 Aligned_cols=26 Identities=27% Similarity=0.682 Sum_probs=23.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
...+++.||+|+|||+++++++..+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45799999999999999999998873
No 456
>PRK14529 adenylate kinase; Provisional
Probab=96.57 E-value=0.0022 Score=61.35 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=25.6
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceE
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~ 282 (473)
.++|.||||+|||++++.||..++++.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 3789999999999999999999998765
No 457
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.56 E-value=0.0025 Score=58.85 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=27.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
+.|+|+||+|||++++.+++ +|+++++.|.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~ 31 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDADK 31 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecCH
Confidence 67999999999999999999 8998887763
No 458
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.56 E-value=0.013 Score=57.62 Aligned_cols=62 Identities=26% Similarity=0.415 Sum_probs=46.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCc----hHHHHHHHHhc---cCceEEEeccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSN----SDLRTLLVATA---NRSILVVEDID 314 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~----~~l~~l~~~~~---~~sIL~iDdiD 314 (473)
..+.||.|.+|+||.++++..|.-.++.++.++.+.--+. ++|+.++..+. .+.+++|+|-+
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCC
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcc
Confidence 3568999999999999999999999999999987654222 45666665553 57888888754
No 459
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.55 E-value=0.0029 Score=57.95 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=27.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
+.-+.|.|+||+|||+++++++..+ +.++..++.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 4578999999999999999999988 444555554
No 460
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.55 E-value=0.01 Score=60.88 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
-.+|.||||||||+|++.+|+.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36999999999999999999977
No 461
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.55 E-value=0.011 Score=64.75 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=24.0
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
++...+.+.||+|+|||||++.|+..+
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 345569999999999999999999987
No 462
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.54 E-value=0.0024 Score=69.18 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=30.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
-++|.|+||+|||++.+.+|+.|+++++++|.
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 48999999999999999999999999999884
No 463
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.53 E-value=0.0071 Score=54.97 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=19.3
Q ss_pred ceeEEeCCCCCCHHH-HHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSS-LIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~-la~alA~~l 277 (473)
+.+++.||+|||||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 589999999999999 555655554
No 464
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.52 E-value=0.0028 Score=59.58 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=25.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCce
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDV 281 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~ 281 (473)
+.-+++.|+||+|||++++.+|..++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34689999999999999999999998754
No 465
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.51 E-value=0.13 Score=57.26 Aligned_cols=65 Identities=25% Similarity=0.304 Sum_probs=41.7
Q ss_pred cceeccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc--CCceEE
Q 012016 206 AWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL--NFDVYD 283 (473)
Q Consensus 206 ~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l--~~~~~~ 283 (473)
.|.+.++-+|......+..+.+...+ . + ..-.|-+||+-|.|.|||+++...+..+ +..+.-
T Consensus 6 ~~~~sk~~~P~~~~~~v~R~rL~~~L----~----~--------~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~W 69 (894)
T COG2909 6 MLIPSKLVRPVRPDNYVVRPRLLDRL----R----R--------ANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAW 69 (894)
T ss_pred CCCccccCCCCCcccccccHHHHHHH----h----c--------CCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeE
Confidence 56666777777777766654443332 2 1 1114579999999999999999998633 444443
Q ss_pred ccc
Q 012016 284 LEL 286 (473)
Q Consensus 284 l~~ 286 (473)
+++
T Consensus 70 lsl 72 (894)
T COG2909 70 LSL 72 (894)
T ss_pred eec
Confidence 333
No 466
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.49 E-value=0.0083 Score=67.50 Aligned_cols=63 Identities=22% Similarity=0.362 Sum_probs=41.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc----------CchHHHHHHHH-------hccCceEEEecc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR----------SNSDLRTLLVA-------TANRSILVVEDI 313 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~----------~~~~l~~l~~~-------~~~~sIL~iDdi 313 (473)
+-++|.|+||||||++++++...+ |+.+..+-.+... ....+..++.. .....+|||||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 457999999999999999987654 6677665444320 11233343321 124589999999
Q ss_pred ccc
Q 012016 314 DCT 316 (473)
Q Consensus 314 D~l 316 (473)
-.+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 655
No 467
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.48 E-value=0.01 Score=54.70 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||+|+|||+|++.|+..+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999999976
No 468
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.48 E-value=0.009 Score=60.73 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.9
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
+.++++.||+|+|||++++|+..++.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999999884
No 469
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.48 E-value=0.0096 Score=53.94 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+..++.||.|+|||+++++++-.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999986544
No 470
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.48 E-value=0.0083 Score=61.52 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=22.2
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-+++.|.||||||.|+-.++..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 458999999999999999999998
No 471
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.47 E-value=0.0089 Score=68.63 Aligned_cols=89 Identities=18% Similarity=0.317 Sum_probs=55.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc----------CchHHHHHHHH-------hccCceEEEeccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR----------SNSDLRTLLVA-------TANRSILVVEDID 314 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~----------~~~~l~~l~~~-------~~~~sIL~iDdiD 314 (473)
-++|.|+||||||++++++...+ |+.++.+-++... ....+..++.. .....+|||||+-
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 46899999999999988776544 7777766544320 12344444432 1245799999997
Q ss_pred cccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCC
Q 012016 315 CTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNH 368 (473)
Q Consensus 315 ~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~ 368 (473)
-+ ....+..||..... .+..+|+|+=++.
T Consensus 444 Mv---------------------~~~~m~~LL~~a~~----~garvVLVGD~~Q 472 (988)
T PRK13889 444 MV---------------------GTRQLERVLSHAAD----AGAKVVLVGDPQQ 472 (988)
T ss_pred cC---------------------CHHHHHHHHHhhhh----CCCEEEEECCHHH
Confidence 55 23455666655432 2345677665543
No 472
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.47 E-value=0.011 Score=63.36 Aligned_cols=49 Identities=22% Similarity=0.217 Sum_probs=36.1
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHh----cCCceEEcccccccCchHHHHHH
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY----LNFDVYDLELTELRSNSDLRTLL 299 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~----l~~~~~~l~~~~~~~~~~l~~l~ 299 (473)
|.+..+.+|+.||||||||+|+..++.+ .|-+.+++.+.+ +...+.+-.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE--~~~~l~~~~ 69 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE--SPQDIIKNA 69 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CHHHHHHHH
Confidence 6777889999999999999999977443 267888888753 334444433
No 473
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.46 E-value=0.0082 Score=60.50 Aligned_cols=53 Identities=15% Similarity=0.059 Sum_probs=37.9
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHh---------cCCceEEcccccccCchHHHHHHHH
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY---------LNFDVYDLELTELRSNSDLRTLLVA 301 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~---------l~~~~~~l~~~~~~~~~~l~~l~~~ 301 (473)
|++...-+.++||||+|||.|+..+|-. .+..+++++...-...+.+.+....
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 5666677899999999999999877632 2457778887654455666665543
No 474
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.46 E-value=0.0033 Score=61.55 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=31.6
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTE 288 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~ 288 (473)
|.|..+.+|++|+||||||.++...+... |.+++.++..+
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 56777889999999999999988777654 66677666554
No 475
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.46 E-value=0.019 Score=61.97 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=0.0
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhcCCc------------------------------------eEEcccccc---
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------------------------------------VYDLELTEL--- 289 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~------------------------------------~~~l~~~~~--- 289 (473)
|.+...-+|++|+||||||+|+..++.+.-.. ++.++....
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Q ss_pred ---cCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccch--hHHHHHHHHHhcccccCCCC
Q 012016 290 ---RSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQN--KVTLSGFLNFIDGLWSSCGD 358 (473)
Q Consensus 290 ---~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~--~~~ls~LL~~ldg~~~~~~~ 358 (473)
.....+..++.... .+..++||.+..+.. +.+... +..+..|++.+.. .
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~--------------~~d~~~~~r~~l~~L~~~Lk~------~ 166 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS--------------GFSNEAVVRRELRRLFAWLKQ------K 166 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh--------------hccCHHHHHHHHHHHHHHHHh------C
Q ss_pred ceEEEEecCCCCCCCccccCCC----ceeeEEEe
Q 012016 359 ERIIVFTTNHKEKLDPALLRPG----RMDVHVHM 388 (473)
Q Consensus 359 ~~iiI~tTN~~~~ld~aLlrpg----Rfd~~I~~ 388 (473)
+..+|+|++.....++ +-+.| .+|.+|.+
T Consensus 167 g~TvLlt~~~~~~~~~-~~~~~~~~~laDgVI~L 199 (509)
T PRK09302 167 GVTAVITGERGDEYGP-LTRYGVEEFVSDCVIIL 199 (509)
T ss_pred CCEEEEEECCccCcCC-ccccCceEEEeeEEEEE
No 476
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.45 E-value=0.0081 Score=60.44 Aligned_cols=26 Identities=15% Similarity=0.542 Sum_probs=23.8
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.+.++++.||+|+|||++++++++.+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 35689999999999999999999887
No 477
>PRK13764 ATPase; Provisional
Probab=96.44 E-value=0.0031 Score=68.53 Aligned_cols=26 Identities=38% Similarity=0.769 Sum_probs=23.9
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
..++|++||||+||||+++|+++++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999999884
No 478
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.43 E-value=0.01 Score=65.09 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=23.8
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
++..-+.+.||+|+|||||++.|++.+
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 345569999999999999999999876
No 479
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.031 Score=51.55 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=41.3
Q ss_pred eEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC--CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 012016 384 VHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT--QVTPAEVAEQLMRNDDPELVLNGLIEFLKVK 453 (473)
Q Consensus 384 ~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~--~~t~a~i~~~l~~~~~~~~al~~l~~~l~~~ 453 (473)
..|.+-+|+.++.+.-+. ..+....+.|+.-+..+ ++...+--+.++-|+|.+.|++++...+...
T Consensus 116 v~IFi~pPs~eeL~~RL~----~Rgtds~e~I~~Rl~~a~~Ei~~~~~fdyvivNdd~e~a~~~l~~ii~ae 183 (191)
T COG0194 116 VSIFILPPSLEELERRLK----GRGTDSEEVIARRLENAKKEISHADEFDYVIVNDDLEKALEELKSIILAE 183 (191)
T ss_pred EEEEEcCCCHHHHHHHHH----ccCCCCHHHHHHHHHHHHHHHHHHHhCCEEEECccHHHHHHHHHHHHHHH
Confidence 457888899888654443 22334455555544422 2333333444566899999999998877655
No 480
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.39 E-value=0.003 Score=57.86 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
+.-++|.|+||+|||++++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999885
No 481
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.023 Score=58.34 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=28.9
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTEL 289 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~ 289 (473)
++.++|.||+|+|||+++..+|..+ +..+..+++...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 5568999999999999999999876 555655555443
No 482
>PRK12338 hypothetical protein; Provisional
Probab=96.39 E-value=0.0033 Score=63.17 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=26.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceE
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~ 282 (473)
|.-+++.|+||||||++++++|..++...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 457899999999999999999999997653
No 483
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.39 E-value=0.0029 Score=57.09 Aligned_cols=37 Identities=35% Similarity=0.461 Sum_probs=30.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR 290 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~ 290 (473)
.-+.|.|.||+|||++|+++...| +.+++.+|...+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 358899999999999999999988 7888888877653
No 484
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.38 E-value=0.0034 Score=57.90 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=25.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceE
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~ 282 (473)
.-+.+.||+|+|||+++++++..++...+
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i 32 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFI 32 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 35899999999999999999999987543
No 485
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.38 E-value=0.0028 Score=58.15 Aligned_cols=25 Identities=28% Similarity=0.382 Sum_probs=22.6
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCC
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNF 279 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~ 279 (473)
-++|.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998754
No 486
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.36 E-value=0.016 Score=55.53 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=23.7
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.+.-...++||.|+|||||++.++.+.
T Consensus 55 ~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 55 NPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred cCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 445578999999999999999999876
No 487
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.36 E-value=0.017 Score=52.29 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=23.1
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc---CCceEE
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL---NFDVYD 283 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l---~~~~~~ 283 (473)
-+.+|+++|+|||++|-++|-.. |..+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 37889999999999999888765 555554
No 488
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.36 E-value=0.013 Score=64.25 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=24.4
Q ss_pred CCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 250 KAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 250 ~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+++..-+.+.||+|+|||||++.|++.+
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445679999999999999999999976
No 489
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.35 E-value=0.011 Score=60.33 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=37.6
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHh---------cCCceEEcccccccCchHHHHHHHH
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY---------LNFDVYDLELTELRSNSDLRTLLVA 301 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~---------l~~~~~~l~~~~~~~~~~l~~l~~~ 301 (473)
|++...-+.|+||||||||.|+..+|-. ++-.+++++...-.....+.+....
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~ 183 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER 183 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5666666899999999999999877632 1356777877654455666665543
No 490
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.33 E-value=0.025 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~ 278 (473)
-..++||.|+|||++..||+-.++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 467999999999999999987763
No 491
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.32 E-value=0.0031 Score=57.36 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.4
Q ss_pred eCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 259 YGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 259 ~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.||||||||+++++++..++..+++-|
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 399999999999999999987666554
No 492
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.32 E-value=0.25 Score=52.02 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=29.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc----CCceEEcccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELTEL 289 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l----~~~~~~l~~~~~ 289 (473)
+.-+++.||+|+|||+++..+|.++ |..+..+++...
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 5679999999999999999888774 566766666544
No 493
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.31 E-value=0.0078 Score=60.54 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=30.3
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---------CCceEEccccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELTE 288 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---------~~~~~~l~~~~ 288 (473)
|.+...-++++||||||||+++..+|-.. +-.+++++...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56666678999999999999999887653 23667776554
No 494
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.31 E-value=0.011 Score=62.63 Aligned_cols=112 Identities=20% Similarity=0.290 Sum_probs=66.3
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEccccc--c-----------cCchHHHHHHHHhccCceEEEecccccccccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTE--L-----------RSNSDLRTLLVATANRSILVVEDIDCTIDLQD 321 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~--~-----------~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~ 321 (473)
++||.|.|.+.||-|.+.+-|.....+-..--.+ + .++..|..--.-...++|++|||+|.+.+
T Consensus 336 NiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsD--- 412 (818)
T KOG0479|consen 336 NILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSD--- 412 (818)
T ss_pred eEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccchhhhhcCceEEccCceEEehhcccccc---
Confidence 5999999999999999999987744332211111 0 12223322111235789999999998843
Q ss_pred CCccccCCCCCCCccchhHHHHHHHHHh------cccccCCCCceEEEEecCCCC-------------CCCccccCCCce
Q 012016 322 RLPADIAGEGEGPIQQNKVTLSGFLNFI------DGLWSSCGDERIIVFTTNHKE-------------KLDPALLRPGRM 382 (473)
Q Consensus 322 r~~~~~~~~~~~~~~~~~~~ls~LL~~l------dg~~~~~~~~~iiI~tTN~~~-------------~ld~aLlrpgRf 382 (473)
..+..+.....+= .|+..+-....-|+++.|... .|+..|+. ||
T Consensus 413 ---------------iDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLS--RF 475 (818)
T KOG0479|consen 413 ---------------IDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLS--RF 475 (818)
T ss_pred ---------------hhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHh--hh
Confidence 1233333333221 133333334456888888652 35677888 99
Q ss_pred eeEE
Q 012016 383 DVHV 386 (473)
Q Consensus 383 d~~I 386 (473)
|...
T Consensus 476 DLlF 479 (818)
T KOG0479|consen 476 DLLF 479 (818)
T ss_pred cEEE
Confidence 8543
No 495
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.31 E-value=0.017 Score=62.94 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=23.2
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
++..+.+.||+|+|||||++.|++.+
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34569999999999999999999887
No 496
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.30 E-value=0.02 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
.++|.|+||+|||+++.++++..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999988544
No 497
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.30 E-value=0.01 Score=64.10 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=23.8
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
++..-+.+.||+|+|||||++.+++..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345569999999999999999999877
No 498
>PLN02165 adenylate isopentenyltransferase
Probab=96.29 E-value=0.0045 Score=62.50 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=31.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL 289 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~ 289 (473)
+.-+.|.||+|+|||+|+..||..++..++..|.-.+
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~Qv 79 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQV 79 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChhee
Confidence 3468999999999999999999999988777665433
No 499
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.29 E-value=0.0042 Score=58.27 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=28.5
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
-+.++||+|+|||++++.+++.+|+++++.|.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~ 34 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDADI 34 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCcH
Confidence 47899999999999999999998999987653
No 500
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.28 E-value=0.014 Score=63.71 Aligned_cols=85 Identities=21% Similarity=0.344 Sum_probs=53.0
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC---CceEEcccc-----
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELT----- 287 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~---~~~~~l~~~----- 287 (473)
.+|+++.+.++..+.+.+.+. . +...+|++||.|+|||+++.++.++++ .+++.++-.
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~----~----------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~ 358 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIH----K----------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL 358 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHH----h----------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC
Confidence 578999988876665543322 1 123478999999999999988888874 234432211
Q ss_pred -cc-----c--CchHHHHHHHHh--ccCceEEEeccc
Q 012016 288 -EL-----R--SNSDLRTLLVAT--ANRSILVVEDID 314 (473)
Q Consensus 288 -~~-----~--~~~~l~~l~~~~--~~~sIL~iDdiD 314 (473)
.+ . ....+...+... .+|.||++.||-
T Consensus 359 ~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 359 PGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 11 1 112344444433 378999999995
Done!