Query 012016
Match_columns 473
No_of_seqs 416 out of 2969
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 19:57:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.8E-40 6.2E-45 338.8 21.0 213 213-434 142-363 (405)
2 4b4t_I 26S protease regulatory 100.0 5.7E-40 1.9E-44 336.0 22.5 215 211-434 174-397 (437)
3 4b4t_L 26S protease subunit RP 100.0 2.9E-39 9.9E-44 334.6 22.5 231 213-452 175-421 (437)
4 4b4t_M 26S protease regulatory 100.0 1.4E-39 4.7E-44 336.8 19.4 213 211-434 173-396 (434)
5 4b4t_K 26S protease regulatory 100.0 4.3E-39 1.5E-43 332.8 22.1 214 212-434 165-388 (428)
6 4b4t_H 26S protease regulatory 100.0 1.1E-38 3.7E-43 329.5 20.2 214 210-434 200-424 (467)
7 3cf2_A TER ATPase, transitiona 100.0 3.8E-34 1.3E-38 315.4 10.1 213 213-434 471-692 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2.4E-32 8.1E-37 301.1 21.3 209 214-434 199-416 (806)
9 3cf0_A Transitional endoplasmi 100.0 1.2E-28 4.2E-33 245.0 21.7 211 213-434 9-230 (301)
10 2x8a_A Nuclear valosin-contain 100.0 1.9E-28 6.6E-33 240.5 20.1 209 214-434 5-227 (274)
11 2ce7_A Cell division protein F 100.0 1E-28 3.5E-33 259.1 17.6 211 214-434 11-230 (476)
12 1xwi_A SKD1 protein; VPS4B, AA 100.0 5.7E-27 1.9E-31 235.3 23.2 206 214-433 7-223 (322)
13 3h4m_A Proteasome-activating n 100.0 4.4E-27 1.5E-31 230.9 21.5 214 212-434 10-232 (285)
14 2qz4_A Paraplegin; AAA+, SPG7, 100.0 6E-27 2.1E-31 226.6 21.3 211 215-434 2-223 (262)
15 3eie_A Vacuolar protein sortin 99.9 8.7E-27 3E-31 233.8 19.8 209 212-434 11-229 (322)
16 1lv7_A FTSH; alpha/beta domain 99.9 2.6E-26 9.1E-31 222.4 21.8 212 213-434 6-226 (257)
17 2qp9_X Vacuolar protein sortin 99.9 3.6E-26 1.2E-30 232.5 19.3 207 213-433 45-261 (355)
18 2dhr_A FTSH; AAA+ protein, hex 99.9 1.9E-26 6.5E-31 243.2 16.4 211 214-434 26-245 (499)
19 3hu3_A Transitional endoplasmi 99.9 7.5E-26 2.6E-30 238.9 19.8 208 214-433 199-415 (489)
20 2zan_A Vacuolar protein sortin 99.9 2.3E-25 8E-30 233.0 20.8 208 213-434 128-346 (444)
21 2r62_A Cell division protease 99.9 3E-26 1E-30 223.1 7.7 212 214-433 6-226 (268)
22 3vfd_A Spastin; ATPase, microt 99.9 1.4E-24 4.8E-29 223.3 20.1 211 210-433 106-326 (389)
23 1ixz_A ATP-dependent metallopr 99.9 2.5E-24 8.4E-29 208.1 20.6 212 213-434 10-230 (254)
24 3d8b_A Fidgetin-like protein 1 99.9 3.2E-24 1.1E-28 218.2 20.9 208 214-434 79-296 (357)
25 3b9p_A CG5977-PA, isoform A; A 99.9 6.7E-24 2.3E-28 209.5 19.0 208 213-433 15-233 (297)
26 1iy2_A ATP-dependent metallopr 99.9 3.1E-23 1.1E-27 203.4 20.3 211 213-433 34-253 (278)
27 3t15_A Ribulose bisphosphate c 99.9 1.3E-24 4.5E-29 215.2 10.4 172 245-429 28-220 (293)
28 1ypw_A Transitional endoplasmi 99.9 3.5E-26 1.2E-30 255.1 -3.5 213 213-434 471-692 (806)
29 1ypw_A Transitional endoplasmi 99.9 6.7E-22 2.3E-26 220.6 18.0 209 213-433 198-415 (806)
30 3pfi_A Holliday junction ATP-d 99.8 5.7E-19 2E-23 177.3 20.8 195 206-433 18-227 (338)
31 2c9o_A RUVB-like 1; hexameric 99.8 5.3E-20 1.8E-24 193.1 8.7 172 214-393 32-226 (456)
32 1hqc_A RUVB; extended AAA-ATPa 99.8 3.2E-18 1.1E-22 170.4 18.9 190 213-433 6-211 (324)
33 1g41_A Heat shock protein HSLU 99.8 1.5E-19 5.1E-24 187.3 6.6 162 220-400 16-188 (444)
34 3syl_A Protein CBBX; photosynt 99.8 2.7E-18 9.4E-23 169.9 14.8 174 218-411 29-224 (309)
35 1ofh_A ATP-dependent HSL prote 99.7 3.3E-17 1.1E-21 161.7 16.9 173 220-403 16-214 (310)
36 3u61_B DNA polymerase accessor 99.7 3.3E-17 1.1E-21 163.6 16.7 158 206-405 15-179 (324)
37 2chg_A Replication factor C sm 99.7 2.7E-16 9.3E-21 146.2 18.7 155 212-407 10-177 (226)
38 1d2n_A N-ethylmaleimide-sensit 99.7 1.5E-16 5.1E-21 155.0 17.2 167 219-402 33-210 (272)
39 3uk6_A RUVB-like 2; hexameric 99.7 2.2E-16 7.4E-21 160.1 18.5 182 216-433 41-303 (368)
40 3hws_A ATP-dependent CLP prote 99.7 2.1E-17 7E-22 168.1 7.4 173 221-402 17-267 (363)
41 1njg_A DNA polymerase III subu 99.7 1.6E-15 5.6E-20 142.5 18.9 156 212-407 16-201 (250)
42 1sxj_A Activator 1 95 kDa subu 99.7 7.1E-16 2.4E-20 164.1 18.2 196 206-429 28-248 (516)
43 1jbk_A CLPB protein; beta barr 99.7 8E-17 2.7E-21 146.4 8.6 151 215-400 18-194 (195)
44 2chq_A Replication factor C sm 99.6 7.9E-16 2.7E-20 152.2 13.5 155 212-407 10-177 (319)
45 3pvs_A Replication-associated 99.6 1.4E-15 4.7E-20 158.9 16.0 150 213-406 20-180 (447)
46 3bos_A Putative DNA replicatio 99.6 6.3E-16 2.2E-20 146.3 12.1 161 212-407 21-190 (242)
47 4fcw_A Chaperone protein CLPB; 99.6 2.6E-15 9E-20 148.4 15.4 161 219-406 17-231 (311)
48 1l8q_A Chromosomal replication 99.6 2.8E-15 9.5E-20 149.7 15.0 187 212-432 4-207 (324)
49 1sxj_B Activator 1 37 kDa subu 99.6 4.8E-15 1.6E-19 146.8 16.2 154 212-406 14-181 (323)
50 1jr3_A DNA polymerase III subu 99.6 1.3E-14 4.3E-19 146.9 19.5 156 212-407 9-194 (373)
51 3m6a_A ATP-dependent protease 99.6 9.3E-16 3.2E-20 164.0 11.5 160 218-404 80-266 (543)
52 1iqp_A RFCS; clamp loader, ext 99.6 6.5E-15 2.2E-19 146.1 16.1 155 212-407 18-185 (327)
53 1sxj_D Activator 1 41 kDa subu 99.6 5.7E-15 1.9E-19 148.4 14.7 158 206-406 26-207 (353)
54 3te6_A Regulatory protein SIR3 99.6 8.4E-15 2.9E-19 145.8 15.2 151 221-406 22-213 (318)
55 2r44_A Uncharacterized protein 99.6 3.4E-15 1.2E-19 149.4 12.1 152 217-406 25-200 (331)
56 1in4_A RUVB, holliday junction 99.6 6.5E-14 2.2E-18 140.8 21.2 191 212-433 18-223 (334)
57 2v1u_A Cell division control p 99.6 2.7E-15 9.1E-20 152.1 10.7 161 216-405 16-215 (387)
58 2p65_A Hypothetical protein PF 99.6 1.9E-15 6.4E-20 137.1 8.0 144 215-392 18-187 (187)
59 2qby_B CDC6 homolog 3, cell di 99.6 1.2E-14 4.1E-19 147.7 14.5 151 219-405 20-211 (384)
60 1um8_A ATP-dependent CLP prote 99.6 4.1E-14 1.4E-18 144.3 18.3 174 220-402 22-284 (376)
61 2z4s_A Chromosomal replication 99.6 1.1E-14 3.8E-19 151.9 14.0 189 212-433 98-306 (440)
62 1g8p_A Magnesium-chelatase 38 99.6 2.1E-14 7.4E-19 144.1 14.3 156 213-404 18-232 (350)
63 1sxj_E Activator 1 40 kDa subu 99.5 4.9E-14 1.7E-18 141.9 15.8 180 212-431 7-235 (354)
64 3pxi_A Negative regulator of g 99.5 3.5E-14 1.2E-18 157.8 15.8 160 219-406 491-677 (758)
65 1fnn_A CDC6P, cell division co 99.5 9.3E-14 3.2E-18 141.1 17.5 160 217-406 15-208 (389)
66 2qby_A CDC6 homolog 1, cell di 99.5 3.6E-14 1.2E-18 143.6 14.1 159 216-405 17-211 (386)
67 1r6b_X CLPA protein; AAA+, N-t 99.5 1E-13 3.5E-18 154.0 16.9 154 220-405 459-667 (758)
68 1sxj_C Activator 1 40 kDa subu 99.5 2.1E-13 7.1E-18 137.1 16.8 157 206-405 14-183 (340)
69 1a5t_A Delta prime, HOLB; zinc 99.5 4.6E-13 1.6E-17 134.5 18.9 146 252-429 23-201 (334)
70 1qvr_A CLPB protein; coiled co 99.5 4.7E-14 1.6E-18 158.7 12.5 157 214-405 165-346 (854)
71 3pxg_A Negative regulator of g 99.5 1E-13 3.5E-18 145.7 14.3 147 213-406 174-340 (468)
72 2bjv_A PSP operon transcriptio 99.5 7.5E-14 2.6E-18 135.2 12.1 155 216-405 3-195 (265)
73 1r6b_X CLPA protein; AAA+, N-t 99.5 3E-13 1E-17 150.2 15.2 158 214-405 181-363 (758)
74 3n70_A Transport activator; si 99.5 9.4E-14 3.2E-18 122.5 8.5 131 220-390 2-143 (145)
75 3pxi_A Negative regulator of g 99.4 4.6E-13 1.6E-17 148.7 14.3 147 213-406 174-340 (758)
76 1ojl_A Transcriptional regulat 99.4 2.4E-12 8.1E-17 127.7 13.6 151 220-405 3-191 (304)
77 2gno_A DNA polymerase III, gam 99.4 1.4E-12 4.9E-17 129.4 11.9 123 253-405 18-153 (305)
78 1qvr_A CLPB protein; coiled co 99.4 1.8E-12 6E-17 145.9 13.4 159 219-405 558-771 (854)
79 3co5_A Putative two-component 99.4 3.5E-13 1.2E-17 118.6 6.0 131 220-390 5-141 (143)
80 3f9v_A Minichromosome maintena 99.3 3.2E-13 1.1E-17 145.8 4.1 128 255-406 329-492 (595)
81 3ec2_A DNA replication protein 99.3 1.9E-12 6.6E-17 117.8 8.6 128 214-369 5-143 (180)
82 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 6.7E-12 2.3E-16 132.4 11.2 146 220-404 23-196 (500)
83 1w5s_A Origin recognition comp 99.2 5.8E-11 2E-15 121.4 14.6 164 217-405 20-229 (412)
84 4akg_A Glutathione S-transfera 99.2 2.9E-11 9.8E-16 147.6 13.6 137 253-405 1267-1432(2695)
85 2w58_A DNAI, primosome compone 99.2 3.9E-11 1.3E-15 111.0 10.4 96 215-316 21-127 (202)
86 1svm_A Large T antigen; AAA+ f 99.1 8.5E-11 2.9E-15 119.7 7.9 121 248-390 164-284 (377)
87 2qgz_A Helicase loader, putati 99.1 1.2E-10 4.2E-15 115.6 7.2 96 215-316 120-226 (308)
88 1tue_A Replication protein E1; 99.1 3.6E-10 1.2E-14 104.8 9.4 114 249-391 54-179 (212)
89 3k1j_A LON protease, ATP-depen 99.0 1.5E-09 5.2E-14 117.4 10.8 52 212-278 34-85 (604)
90 2kjq_A DNAA-related protein; s 98.9 2.1E-09 7.2E-14 95.1 7.5 57 253-316 36-95 (149)
91 3cmw_A Protein RECA, recombina 98.9 2.5E-09 8.6E-14 125.8 9.3 147 216-369 1017-1218(1706)
92 2fna_A Conserved hypothetical 98.8 5E-08 1.7E-12 97.1 15.7 174 216-431 10-248 (357)
93 2vhj_A Ntpase P4, P4; non- hyd 98.8 3E-09 1E-13 105.3 6.4 116 249-376 119-242 (331)
94 2qen_A Walker-type ATPase; unk 98.8 5.9E-07 2E-11 89.1 22.4 179 215-431 8-244 (350)
95 2r2a_A Uncharacterized protein 98.8 5E-09 1.7E-13 97.3 6.5 121 254-395 6-157 (199)
96 1u0j_A DNA replication protein 98.7 4.9E-08 1.7E-12 94.2 11.7 59 251-316 102-160 (267)
97 4akg_A Glutathione S-transfera 98.7 5.8E-08 2E-12 119.0 13.6 129 253-402 645-791 (2695)
98 3vkg_A Dynein heavy chain, cyt 98.6 1.7E-07 6E-12 115.5 14.6 137 253-405 1304-1470(3245)
99 1ny5_A Transcriptional regulat 98.5 4.5E-07 1.5E-11 92.6 12.2 153 219-405 137-326 (387)
100 3dzd_A Transcriptional regulat 98.5 6.8E-07 2.3E-11 90.7 13.0 152 220-405 130-317 (368)
101 3f8t_A Predicted ATPase involv 98.5 7.7E-08 2.6E-12 99.5 5.7 143 221-395 215-385 (506)
102 3vkg_A Dynein heavy chain, cyt 98.4 1.4E-06 4.6E-11 107.8 13.5 129 253-405 604-754 (3245)
103 1jr3_D DNA polymerase III, del 98.2 8E-06 2.7E-10 81.5 12.4 122 252-406 17-157 (343)
104 3cmu_A Protein RECA, recombina 98.2 2.5E-06 8.6E-11 101.7 9.4 114 249-369 1423-1563(2050)
105 1ye8_A Protein THEP1, hypothet 98.1 7E-06 2.4E-10 74.5 9.4 27 255-281 2-28 (178)
106 1z6t_A APAF-1, apoptotic prote 97.8 0.00027 9.3E-09 75.5 15.4 51 215-276 120-170 (591)
107 2cvh_A DNA repair and recombin 97.8 9.3E-05 3.2E-09 68.2 9.7 40 249-288 16-55 (220)
108 3upu_A ATP-dependent DNA helic 97.7 0.00013 4.5E-09 75.9 10.9 53 212-277 17-69 (459)
109 3kb2_A SPBC2 prophage-derived 97.7 4.8E-05 1.6E-09 67.3 6.3 32 255-286 3-34 (173)
110 3trf_A Shikimate kinase, SK; a 97.7 2.3E-05 7.9E-10 70.6 4.2 34 253-286 5-38 (185)
111 1n0w_A DNA repair protein RAD5 97.6 0.00016 5.4E-09 67.7 9.6 28 249-276 20-47 (243)
112 1qhx_A CPT, protein (chloramph 97.6 3.1E-05 1.1E-09 69.2 4.0 35 253-287 3-37 (178)
113 3vaa_A Shikimate kinase, SK; s 97.6 3.5E-05 1.2E-09 70.7 4.3 33 253-285 25-57 (199)
114 2rhm_A Putative kinase; P-loop 97.6 3.4E-05 1.2E-09 69.8 3.9 34 251-284 3-36 (193)
115 3hr8_A Protein RECA; alpha and 97.6 0.00022 7.6E-09 71.7 10.0 70 249-318 57-153 (356)
116 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00034 1.2E-08 64.8 10.7 29 249-277 19-47 (235)
117 3sfz_A APAF-1, apoptotic pepti 97.6 0.00097 3.3E-08 76.9 16.3 164 214-426 119-321 (1249)
118 1u94_A RECA protein, recombina 97.5 0.00017 5.9E-09 72.6 8.4 70 249-318 59-155 (356)
119 2z43_A DNA repair and recombin 97.5 8.3E-05 2.8E-09 73.8 5.8 40 249-288 103-151 (324)
120 2orw_A Thymidine kinase; TMTK, 97.5 4.2E-05 1.5E-09 69.6 3.0 30 254-283 4-36 (184)
121 1via_A Shikimate kinase; struc 97.5 5.7E-05 1.9E-09 67.6 3.8 31 255-285 6-36 (175)
122 2iyv_A Shikimate kinase, SK; t 97.5 6.1E-05 2.1E-09 67.8 4.0 32 254-285 3-34 (184)
123 3iij_A Coilin-interacting nucl 97.5 6.2E-05 2.1E-09 67.6 4.1 33 253-285 11-43 (180)
124 1zuh_A Shikimate kinase; alpha 97.5 6.5E-05 2.2E-09 66.7 4.0 32 254-285 8-39 (168)
125 1kag_A SKI, shikimate kinase I 97.5 7.4E-05 2.5E-09 66.4 4.3 32 254-285 5-36 (173)
126 1xp8_A RECA protein, recombina 97.5 0.00037 1.3E-08 70.4 9.8 69 249-317 70-165 (366)
127 2ehv_A Hypothetical protein PH 97.5 0.00038 1.3E-08 65.3 9.3 26 249-274 26-51 (251)
128 2zr9_A Protein RECA, recombina 97.4 0.00022 7.4E-09 71.6 7.9 69 249-317 57-152 (349)
129 1y63_A LMAJ004144AAA protein; 97.4 7.9E-05 2.7E-09 67.4 4.2 33 253-285 10-43 (184)
130 1v5w_A DMC1, meiotic recombina 97.4 0.00031 1E-08 70.3 8.8 40 249-288 118-166 (343)
131 3cmu_A Protein RECA, recombina 97.4 0.00025 8.6E-09 84.8 9.2 70 249-318 1077-1173(2050)
132 3e1s_A Exodeoxyribonuclease V, 97.4 0.0004 1.4E-08 74.3 9.4 64 253-316 204-291 (574)
133 1e6c_A Shikimate kinase; phosp 97.4 9.7E-05 3.3E-09 65.5 3.8 32 254-285 3-34 (173)
134 1nlf_A Regulatory protein REPA 97.4 0.00045 1.5E-08 66.7 8.6 29 249-277 26-54 (279)
135 2cdn_A Adenylate kinase; phosp 97.3 0.00014 4.9E-09 66.4 4.7 33 253-285 20-52 (201)
136 2ze6_A Isopentenyl transferase 97.3 0.00013 4.4E-09 69.8 4.4 33 255-287 3-35 (253)
137 3lw7_A Adenylate kinase relate 97.3 0.00013 4.6E-09 64.2 4.1 30 255-285 3-32 (179)
138 1tev_A UMP-CMP kinase; ploop, 97.3 0.00013 4.4E-09 65.8 4.0 33 253-285 3-35 (196)
139 2r8r_A Sensor protein; KDPD, P 97.3 0.00075 2.6E-08 63.3 9.0 61 254-316 7-96 (228)
140 3t61_A Gluconokinase; PSI-biol 97.3 0.00017 5.9E-09 66.0 4.6 33 253-285 18-50 (202)
141 1ly1_A Polynucleotide kinase; 97.3 0.00011 3.9E-09 65.4 3.2 32 253-284 2-34 (181)
142 1qf9_A UMP/CMP kinase, protein 97.3 0.00014 4.8E-09 65.4 3.9 33 253-285 6-38 (194)
143 3cm0_A Adenylate kinase; ATP-b 97.3 0.00013 4.3E-09 65.7 3.5 32 254-285 5-36 (186)
144 2c95_A Adenylate kinase 1; tra 97.3 0.00015 5.1E-09 65.6 3.9 33 253-285 9-41 (196)
145 2pt5_A Shikimate kinase, SK; a 97.3 0.00015 5E-09 64.1 3.8 31 255-285 2-32 (168)
146 3be4_A Adenylate kinase; malar 97.3 0.00013 4.6E-09 67.7 3.6 32 254-285 6-37 (217)
147 1pzn_A RAD51, DNA repair and r 97.3 0.00037 1.3E-08 69.9 7.0 29 249-277 127-155 (349)
148 2bwj_A Adenylate kinase 5; pho 97.2 0.00016 5.6E-09 65.5 3.7 33 253-285 12-44 (199)
149 3dl0_A Adenylate kinase; phosp 97.2 0.00019 6.4E-09 66.4 4.0 31 255-285 2-32 (216)
150 1kht_A Adenylate kinase; phosp 97.2 0.00016 5.5E-09 65.0 3.4 30 254-283 4-38 (192)
151 1aky_A Adenylate kinase; ATP:A 97.2 0.00021 7.2E-09 66.4 4.3 31 254-284 5-35 (220)
152 3io5_A Recombination and repai 97.2 0.001 3.4E-08 65.6 9.2 69 249-318 25-125 (333)
153 1zd8_A GTP:AMP phosphotransfer 97.2 0.00018 6.2E-09 67.2 3.8 33 253-285 7-39 (227)
154 1gvn_B Zeta; postsegregational 97.2 0.00042 1.4E-08 67.5 6.5 34 253-286 33-66 (287)
155 1knq_A Gluconate kinase; ALFA/ 97.2 0.00026 8.9E-09 63.0 4.6 33 253-285 8-40 (175)
156 1zp6_A Hypothetical protein AT 97.2 0.00019 6.4E-09 64.8 3.7 36 251-286 7-42 (191)
157 2dr3_A UPF0273 protein PH0284; 97.2 0.0014 4.8E-08 61.2 9.8 28 249-276 19-46 (247)
158 3fb4_A Adenylate kinase; psych 97.2 0.0002 6.9E-09 66.1 3.8 30 256-285 3-32 (216)
159 2i1q_A DNA repair and recombin 97.2 0.00043 1.5E-08 68.4 6.4 28 249-276 94-121 (322)
160 2p5t_B PEZT; postsegregational 97.2 0.00043 1.5E-08 66.0 6.0 38 252-289 31-68 (253)
161 2a5y_B CED-4; apoptosis; HET: 97.2 0.01 3.4E-07 63.0 17.3 43 223-275 132-174 (549)
162 1ukz_A Uridylate kinase; trans 97.1 0.00028 9.6E-09 64.4 4.3 32 254-285 16-47 (203)
163 1ak2_A Adenylate kinase isoenz 97.1 0.00029 1E-08 66.1 4.4 32 254-285 17-48 (233)
164 1zak_A Adenylate kinase; ATP:A 97.1 0.00019 6.6E-09 66.7 3.0 32 253-284 5-36 (222)
165 4eun_A Thermoresistant glucoki 97.1 0.00037 1.3E-08 63.8 4.8 32 253-284 29-60 (200)
166 2pez_A Bifunctional 3'-phospho 97.1 0.00034 1.2E-08 62.6 4.4 35 253-287 5-42 (179)
167 2vli_A Antibiotic resistance p 97.1 0.00026 8.8E-09 63.4 3.3 29 254-282 6-34 (183)
168 3lda_A DNA repair protein RAD5 97.1 0.001 3.5E-08 67.9 8.1 27 249-275 174-200 (400)
169 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00021 7.1E-09 71.6 2.7 50 225-283 5-54 (359)
170 3cmw_A Protein RECA, recombina 97.0 0.00072 2.5E-08 80.0 7.6 70 249-318 30-126 (1706)
171 3tlx_A Adenylate kinase 2; str 97.0 0.00039 1.3E-08 65.9 4.4 33 253-285 29-61 (243)
172 2c9o_A RUVB-like 1; hexameric 97.0 0.0017 5.9E-08 67.3 9.3 74 305-407 296-382 (456)
173 1e4v_A Adenylate kinase; trans 97.0 0.00032 1.1E-08 64.8 3.3 30 255-284 2-31 (214)
174 3crm_A TRNA delta(2)-isopenten 97.0 0.00047 1.6E-08 68.3 4.3 34 253-286 5-38 (323)
175 2pbr_A DTMP kinase, thymidylat 97.0 0.00048 1.6E-08 62.0 4.1 31 255-285 2-35 (195)
176 2xb4_A Adenylate kinase; ATP-b 97.0 0.00044 1.5E-08 64.6 3.8 30 255-284 2-31 (223)
177 2if2_A Dephospho-COA kinase; a 96.9 0.00041 1.4E-08 63.4 3.5 31 255-286 3-33 (204)
178 1g5t_A COB(I)alamin adenosyltr 96.9 0.0017 5.9E-08 59.5 7.2 110 254-390 29-179 (196)
179 3nwj_A ATSK2; P loop, shikimat 96.9 0.00054 1.9E-08 65.4 4.0 33 253-285 48-80 (250)
180 3umf_A Adenylate kinase; rossm 96.9 0.00062 2.1E-08 63.6 4.2 31 253-283 29-59 (217)
181 1cke_A CK, MSSA, protein (cyti 96.9 0.00061 2.1E-08 63.2 4.2 32 254-285 6-37 (227)
182 1jjv_A Dephospho-COA kinase; P 96.9 0.00053 1.8E-08 62.8 3.6 30 255-285 4-33 (206)
183 2bbw_A Adenylate kinase 4, AK4 96.9 0.00066 2.3E-08 64.2 4.4 31 253-283 27-57 (246)
184 3jvv_A Twitching mobility prot 96.9 0.0034 1.2E-07 63.0 9.8 23 255-277 125-147 (356)
185 3ake_A Cytidylate kinase; CMP 96.9 0.00059 2E-08 62.2 3.8 31 255-285 4-34 (208)
186 2grj_A Dephospho-COA kinase; T 96.8 0.00063 2.2E-08 62.3 3.8 32 255-286 14-45 (192)
187 2v54_A DTMP kinase, thymidylat 96.8 0.00071 2.4E-08 61.5 4.1 33 254-286 5-38 (204)
188 2jaq_A Deoxyguanosine kinase; 96.8 0.00069 2.4E-08 61.4 4.0 29 255-283 2-30 (205)
189 1nks_A Adenylate kinase; therm 96.8 0.00038 1.3E-08 62.6 2.1 24 255-278 3-26 (194)
190 2zts_A Putative uncharacterize 96.8 0.0019 6.6E-08 60.3 7.1 38 249-286 26-67 (251)
191 3sr0_A Adenylate kinase; phosp 96.8 0.0008 2.7E-08 62.3 4.2 28 256-283 3-30 (206)
192 2b8t_A Thymidine kinase; deoxy 96.8 0.0028 9.4E-08 59.4 7.8 62 255-316 14-101 (223)
193 3r20_A Cytidylate kinase; stru 96.8 0.00081 2.8E-08 63.5 4.2 33 253-285 9-41 (233)
194 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0008 2.7E-08 64.4 4.1 33 254-286 5-40 (260)
195 2z0h_A DTMP kinase, thymidylat 96.8 0.00086 3E-08 60.5 4.1 30 256-285 3-35 (197)
196 2plr_A DTMP kinase, probable t 96.8 0.0014 4.8E-08 59.7 5.6 27 254-280 5-31 (213)
197 3uie_A Adenylyl-sulfate kinase 96.7 0.00087 3E-08 61.2 4.0 33 253-285 25-60 (200)
198 1uf9_A TT1252 protein; P-loop, 96.7 0.00092 3.2E-08 60.6 3.6 31 254-285 9-39 (203)
199 3zvl_A Bifunctional polynucleo 96.7 0.0018 6.1E-08 66.5 5.9 59 253-313 258-317 (416)
200 2h92_A Cytidylate kinase; ross 96.6 0.0012 4.2E-08 60.8 4.3 32 254-285 4-35 (219)
201 1vht_A Dephospho-COA kinase; s 96.6 0.0013 4.4E-08 60.8 4.1 31 254-285 5-35 (218)
202 1kao_A RAP2A; GTP-binding prot 96.6 0.0091 3.1E-07 51.4 9.2 24 254-277 4-27 (167)
203 3dm5_A SRP54, signal recogniti 96.6 0.0083 2.9E-07 61.8 10.1 61 225-286 73-136 (443)
204 4e22_A Cytidylate kinase; P-lo 96.6 0.0019 6.5E-08 61.4 5.0 31 254-284 28-58 (252)
205 2qt1_A Nicotinamide riboside k 96.5 0.0013 4.4E-08 60.3 3.6 32 254-285 22-54 (207)
206 1q3t_A Cytidylate kinase; nucl 96.5 0.0016 5.5E-08 61.1 4.4 32 254-285 17-48 (236)
207 4gp7_A Metallophosphoesterase; 96.5 0.0039 1.3E-07 55.5 6.7 20 253-272 9-28 (171)
208 2wwf_A Thymidilate kinase, put 96.5 0.00058 2E-08 62.5 1.2 30 253-282 10-39 (212)
209 1vt4_I APAF-1 related killer D 96.5 0.014 4.7E-07 66.1 12.2 43 222-276 131-173 (1221)
210 4a74_A DNA repair and recombin 96.5 0.0025 8.4E-08 58.9 5.4 29 249-277 21-49 (231)
211 1ltq_A Polynucleotide kinase; 96.5 0.0013 4.3E-08 64.0 3.4 32 254-285 3-35 (301)
212 1uj2_A Uridine-cytidine kinase 96.5 0.0018 6.2E-08 61.5 4.3 29 253-281 22-50 (252)
213 2iut_A DNA translocase FTSK; n 96.5 0.016 5.4E-07 61.5 11.9 74 306-401 345-420 (574)
214 2qor_A Guanylate kinase; phosp 96.5 0.0018 6.2E-08 59.3 4.1 29 250-278 9-37 (204)
215 3a8t_A Adenylate isopentenyltr 96.4 0.0017 5.8E-08 64.6 4.0 36 254-289 41-76 (339)
216 2fz4_A DNA repair protein RAD2 96.4 0.0051 1.8E-07 57.9 7.1 31 255-285 110-140 (237)
217 1kgd_A CASK, peripheral plasma 96.4 0.002 6.7E-08 57.9 4.1 26 253-278 5-30 (180)
218 2qmh_A HPR kinase/phosphorylas 96.4 0.0021 7.1E-08 59.1 4.1 36 253-289 34-69 (205)
219 2ius_A DNA translocase FTSK; n 96.4 0.013 4.6E-07 61.4 10.8 41 359-401 332-374 (512)
220 4b3f_X DNA-binding protein smu 96.4 0.0053 1.8E-07 66.6 7.8 58 216-288 183-243 (646)
221 2yvu_A Probable adenylyl-sulfa 96.4 0.0022 7.6E-08 57.6 4.0 33 253-285 13-48 (186)
222 2px0_A Flagellar biosynthesis 96.4 0.019 6.4E-07 56.0 10.9 59 253-311 105-189 (296)
223 3foz_A TRNA delta(2)-isopenten 96.3 0.0026 9E-08 62.4 4.6 34 253-286 10-43 (316)
224 2r6a_A DNAB helicase, replicat 96.3 0.0082 2.8E-07 62.2 8.7 37 249-285 199-239 (454)
225 2bdt_A BH3686; alpha-beta prot 96.3 0.0024 8.2E-08 57.5 4.1 25 255-279 4-28 (189)
226 1rz3_A Hypothetical protein rb 96.3 0.0058 2E-07 55.8 6.7 35 253-287 22-59 (201)
227 2ce2_X GTPase HRAS; signaling 96.3 0.012 4E-07 50.5 8.3 23 255-277 5-27 (166)
228 1nn5_A Similar to deoxythymidy 96.3 0.001 3.6E-08 60.9 1.4 27 253-279 9-35 (215)
229 2j41_A Guanylate kinase; GMP, 96.3 0.0024 8.3E-08 58.0 3.8 25 253-277 6-30 (207)
230 1g41_A Heat shock protein HSLU 96.3 0.0054 1.8E-07 63.3 6.8 95 296-401 242-346 (444)
231 1w4r_A Thymidine kinase; type 96.3 0.0051 1.7E-07 56.3 5.7 63 254-316 21-103 (195)
232 2v3c_C SRP54, signal recogniti 96.2 0.0061 2.1E-07 62.8 7.0 34 253-286 99-135 (432)
233 1qde_A EIF4A, translation init 96.2 0.022 7.7E-07 52.2 10.3 57 216-275 14-74 (224)
234 1z0j_A RAB-22, RAS-related pro 96.2 0.0072 2.4E-07 52.4 6.5 24 254-277 7-30 (170)
235 2f6r_A COA synthase, bifunctio 96.2 0.0024 8.1E-08 61.9 3.5 31 254-285 76-106 (281)
236 3d3q_A TRNA delta(2)-isopenten 96.2 0.0027 9.3E-08 63.2 4.0 33 254-286 8-40 (340)
237 3fdi_A Uncharacterized protein 96.2 0.0026 8.8E-08 58.5 3.6 30 254-283 7-36 (201)
238 3tau_A Guanylate kinase, GMP k 96.2 0.0029 9.8E-08 58.2 3.9 27 253-279 8-34 (208)
239 1u8z_A RAS-related protein RAL 96.2 0.017 5.7E-07 49.7 8.6 23 254-276 5-27 (168)
240 1m7g_A Adenylylsulfate kinase; 96.2 0.0032 1.1E-07 57.9 4.0 34 253-286 25-62 (211)
241 4dsu_A GTPase KRAS, isoform 2B 96.2 0.013 4.6E-07 51.7 8.0 24 254-277 5-28 (189)
242 3c8u_A Fructokinase; YP_612366 96.2 0.0045 1.5E-07 56.8 4.9 26 253-278 22-47 (208)
243 1ek0_A Protein (GTP-binding pr 96.1 0.0085 2.9E-07 51.8 6.5 23 255-277 5-27 (170)
244 1c1y_A RAS-related protein RAP 96.1 0.017 5.7E-07 49.8 8.3 22 255-276 5-26 (167)
245 2a9k_A RAS-related protein RAL 96.1 0.021 7.2E-07 50.2 9.0 23 254-276 19-41 (187)
246 1nrj_B SR-beta, signal recogni 96.1 0.018 6E-07 52.6 8.6 25 253-277 12-36 (218)
247 3exa_A TRNA delta(2)-isopenten 96.1 0.0042 1.4E-07 61.1 4.4 34 254-287 4-37 (322)
248 3tr0_A Guanylate kinase, GMP k 96.0 0.0041 1.4E-07 56.4 4.0 26 253-278 7-32 (205)
249 2bov_A RAla, RAS-related prote 96.0 0.025 8.6E-07 50.7 9.2 23 254-276 15-37 (206)
250 2gxq_A Heat resistant RNA depe 96.0 0.021 7.1E-07 51.6 8.5 23 254-276 39-62 (207)
251 3asz_A Uridine kinase; cytidin 96.0 0.0035 1.2E-07 57.4 3.2 32 254-285 7-40 (211)
252 1r2q_A RAS-related protein RAB 96.0 0.012 4.1E-07 50.9 6.5 23 254-276 7-29 (170)
253 3gmt_A Adenylate kinase; ssgci 95.9 0.0029 9.8E-08 59.5 2.6 30 255-284 10-39 (230)
254 2efe_B Small GTP-binding prote 95.9 0.014 4.9E-07 51.2 7.0 23 254-276 13-35 (181)
255 3a00_A Guanylate kinase, GMP k 95.9 0.0043 1.5E-07 55.9 3.6 25 254-278 2-26 (186)
256 1lvg_A Guanylate kinase, GMP k 95.9 0.0041 1.4E-07 56.8 3.4 26 253-278 4-29 (198)
257 1tf7_A KAIC; homohexamer, hexa 95.9 0.023 7.8E-07 59.9 9.6 29 249-277 277-305 (525)
258 1ex7_A Guanylate kinase; subst 95.9 0.0064 2.2E-07 55.3 4.6 25 254-278 2-26 (186)
259 3q72_A GTP-binding protein RAD 95.9 0.0091 3.1E-07 51.7 5.4 21 255-275 4-24 (166)
260 2atv_A RERG, RAS-like estrogen 95.9 0.027 9.1E-07 50.5 8.7 24 253-276 28-51 (196)
261 3b6e_A Interferon-induced heli 95.8 0.014 4.9E-07 52.9 6.8 23 254-276 49-71 (216)
262 1r8s_A ADP-ribosylation factor 95.8 0.05 1.7E-06 46.7 10.0 22 255-276 2-23 (164)
263 3kl4_A SRP54, signal recogniti 95.8 0.0076 2.6E-07 62.0 5.3 61 225-285 69-132 (433)
264 1t6n_A Probable ATP-dependent 95.8 0.028 9.6E-07 51.5 8.7 58 214-274 12-72 (220)
265 1htw_A HI0065; nucleotide-bind 95.8 0.0067 2.3E-07 53.6 4.2 27 251-277 31-57 (158)
266 2nzj_A GTP-binding protein REM 95.8 0.015 5.1E-07 50.6 6.5 23 254-276 5-27 (175)
267 2oil_A CATX-8, RAS-related pro 95.8 0.014 4.7E-07 52.1 6.4 23 254-276 26-48 (193)
268 3tkl_A RAS-related protein RAB 95.8 0.014 4.8E-07 52.0 6.4 24 254-277 17-40 (196)
269 1x3s_A RAS-related protein RAB 95.8 0.021 7.1E-07 50.7 7.5 23 254-276 16-38 (195)
270 3b9q_A Chloroplast SRP recepto 95.8 0.008 2.7E-07 58.9 5.0 53 225-277 70-124 (302)
271 2v9p_A Replication protein E1; 95.8 0.0058 2E-07 60.0 4.0 33 249-281 122-154 (305)
272 1c9k_A COBU, adenosylcobinamid 95.7 0.0083 2.8E-07 54.2 4.6 33 256-289 2-34 (180)
273 3kw6_A 26S protease regulatory 95.7 0.0094 3.2E-07 45.9 4.4 46 389-434 1-47 (78)
274 3thx_B DNA mismatch repair pro 95.7 0.015 5E-07 65.4 7.6 24 252-275 672-695 (918)
275 1z0f_A RAB14, member RAS oncog 95.7 0.02 6.7E-07 50.0 7.1 24 254-277 16-39 (179)
276 1x6v_B Bifunctional 3'-phospho 95.7 0.0073 2.5E-07 64.9 4.8 35 253-287 52-89 (630)
277 3con_A GTPase NRAS; structural 95.7 0.016 5.5E-07 51.5 6.5 23 255-277 23-45 (190)
278 3kkq_A RAS-related protein M-R 95.7 0.021 7.3E-07 50.3 7.2 24 254-277 19-42 (183)
279 3thx_A DNA mismatch repair pro 95.7 0.035 1.2E-06 62.4 10.3 23 253-275 662-684 (934)
280 3bc1_A RAS-related protein RAB 95.7 0.023 7.8E-07 50.2 7.2 23 254-276 12-34 (195)
281 1z6g_A Guanylate kinase; struc 95.6 0.0067 2.3E-07 56.3 3.8 25 253-277 23-47 (218)
282 3t1o_A Gliding protein MGLA; G 95.6 0.041 1.4E-06 48.7 8.9 24 254-277 15-38 (198)
283 1znw_A Guanylate kinase, GMP k 95.6 0.0073 2.5E-07 55.3 3.9 26 253-278 20-45 (207)
284 3ney_A 55 kDa erythrocyte memb 95.6 0.0076 2.6E-07 55.3 4.0 26 253-278 19-44 (197)
285 3eph_A TRNA isopentenyltransfe 95.6 0.0063 2.2E-07 61.9 3.7 34 253-286 2-35 (409)
286 3lxx_A GTPase IMAP family memb 95.6 0.039 1.3E-06 51.4 8.8 24 254-277 30-53 (239)
287 1s96_A Guanylate kinase, GMP k 95.5 0.0081 2.8E-07 56.0 3.9 29 250-278 13-41 (219)
288 1wb9_A DNA mismatch repair pro 95.5 0.037 1.3E-06 61.4 9.7 24 253-276 607-630 (800)
289 2yhs_A FTSY, cell division pro 95.5 0.012 4E-07 61.5 5.3 25 253-277 293-317 (503)
290 3hdt_A Putative kinase; struct 95.5 0.0069 2.3E-07 56.7 3.3 32 254-285 15-46 (223)
291 2oxc_A Probable ATP-dependent 95.5 0.027 9.4E-07 52.2 7.5 53 214-269 22-77 (230)
292 3q85_A GTP-binding protein REM 95.5 0.025 8.6E-07 48.9 6.8 21 255-275 4-24 (169)
293 3dz8_A RAS-related protein RAB 95.5 0.017 5.6E-07 51.7 5.7 23 255-277 25-47 (191)
294 2erx_A GTP-binding protein DI- 95.5 0.017 6E-07 49.9 5.7 22 255-276 5-26 (172)
295 2og2_A Putative signal recogni 95.5 0.011 3.8E-07 59.3 4.9 52 226-277 128-181 (359)
296 1vma_A Cell division protein F 95.5 0.013 4.5E-07 57.5 5.3 59 227-286 79-140 (306)
297 1cr0_A DNA primase/helicase; R 95.5 0.0071 2.4E-07 58.6 3.4 29 249-277 31-59 (296)
298 4eaq_A DTMP kinase, thymidylat 95.4 0.01 3.6E-07 55.5 4.2 30 254-283 27-58 (229)
299 2fn4_A P23, RAS-related protei 95.4 0.032 1.1E-06 48.6 7.1 23 254-276 10-32 (181)
300 2eyu_A Twitching motility prot 95.3 0.011 3.7E-07 56.7 4.1 25 253-277 25-49 (261)
301 3bh0_A DNAB-like replicative h 95.3 0.013 4.6E-07 57.5 4.9 38 249-286 64-104 (315)
302 3clv_A RAB5 protein, putative; 95.3 0.037 1.3E-06 49.1 7.4 23 254-276 8-30 (208)
303 2b6h_A ADP-ribosylation factor 95.3 0.05 1.7E-06 48.7 8.3 23 253-275 29-51 (192)
304 1zu4_A FTSY; GTPase, signal re 95.3 0.017 6E-07 56.9 5.6 36 252-287 104-142 (320)
305 1zd9_A ADP-ribosylation factor 95.3 0.035 1.2E-06 49.4 7.1 22 255-276 24-45 (188)
306 4f4c_A Multidrug resistance pr 95.2 0.052 1.8E-06 63.6 10.1 27 251-277 442-468 (1321)
307 1zbd_A Rabphilin-3A; G protein 95.2 0.028 9.7E-07 50.5 6.3 24 254-277 9-32 (203)
308 1odf_A YGR205W, hypothetical 3 95.2 0.016 5.3E-07 56.5 4.8 27 253-279 31-57 (290)
309 1z06_A RAS-related protein RAB 95.2 0.035 1.2E-06 49.3 6.8 23 254-276 21-43 (189)
310 2fg5_A RAB-22B, RAS-related pr 95.2 0.022 7.4E-07 51.0 5.4 24 254-277 24-47 (192)
311 2xau_A PRE-mRNA-splicing facto 95.2 0.059 2E-06 59.6 9.8 59 216-276 72-132 (773)
312 1z2a_A RAS-related protein RAB 95.1 0.012 4E-07 50.8 3.4 23 254-276 6-28 (168)
313 1p9r_A General secretion pathw 95.1 0.025 8.7E-07 57.9 6.4 50 215-278 143-192 (418)
314 1a7j_A Phosphoribulokinase; tr 95.1 0.005 1.7E-07 60.0 1.0 36 254-289 6-44 (290)
315 2jeo_A Uridine-cytidine kinase 95.1 0.0093 3.2E-07 56.2 2.9 26 255-280 27-52 (245)
316 2i3b_A HCR-ntpase, human cance 95.1 0.011 3.7E-07 53.8 3.2 23 255-277 3-25 (189)
317 2y8e_A RAB-protein 6, GH09086P 95.1 0.017 5.7E-07 50.5 4.3 23 254-276 15-37 (179)
318 3tqf_A HPR(Ser) kinase; transf 95.1 0.01 3.5E-07 53.3 2.9 29 253-282 16-44 (181)
319 1gtv_A TMK, thymidylate kinase 95.1 0.0042 1.4E-07 56.8 0.4 24 255-278 2-25 (214)
320 2hup_A RAS-related protein RAB 95.1 0.036 1.2E-06 50.1 6.7 23 254-276 30-52 (201)
321 2oap_1 GSPE-2, type II secreti 95.1 0.0085 2.9E-07 63.1 2.8 26 253-278 260-285 (511)
322 2gk6_A Regulator of nonsense t 95.1 0.017 5.8E-07 62.3 5.2 24 254-277 196-219 (624)
323 1np6_A Molybdopterin-guanine d 95.1 0.014 4.7E-07 52.4 3.7 26 252-277 5-30 (174)
324 3tqc_A Pantothenate kinase; bi 95.0 0.029 9.8E-07 55.4 6.2 25 254-278 93-117 (321)
325 3oes_A GTPase rhebl1; small GT 95.0 0.021 7.3E-07 51.4 5.0 24 254-277 25-48 (201)
326 3e70_C DPA, signal recognition 95.0 0.026 9E-07 55.8 6.0 27 251-277 127-153 (328)
327 4i1u_A Dephospho-COA kinase; s 95.0 0.016 5.5E-07 53.6 4.1 31 255-286 11-41 (210)
328 1xx6_A Thymidine kinase; NESG, 95.0 0.086 2.9E-06 47.9 8.9 63 254-316 9-93 (191)
329 2ewv_A Twitching motility prot 95.0 0.015 5.2E-07 58.6 4.2 27 251-277 134-160 (372)
330 2ged_A SR-beta, signal recogni 94.9 0.027 9.1E-07 50.2 5.3 26 252-277 47-72 (193)
331 2axn_A 6-phosphofructo-2-kinas 94.9 0.014 4.8E-07 61.6 3.9 26 253-278 35-60 (520)
332 2h57_A ADP-ribosylation factor 94.9 0.026 8.8E-07 50.3 5.1 24 254-277 22-45 (190)
333 1fzq_A ADP-ribosylation factor 94.9 0.12 4.1E-06 45.6 9.5 24 253-276 16-39 (181)
334 1ewq_A DNA mismatch repair pro 94.9 0.062 2.1E-06 59.2 9.1 24 253-276 576-599 (765)
335 2hxs_A RAB-26, RAS-related pro 94.9 0.028 9.7E-07 49.0 5.3 23 254-276 7-29 (178)
336 1hv8_A Putative ATP-dependent 94.9 0.09 3.1E-06 51.4 9.4 22 254-275 45-66 (367)
337 1g16_A RAS-related protein SEC 94.9 0.025 8.6E-07 48.8 4.8 23 254-276 4-26 (170)
338 2p5s_A RAS and EF-hand domain 94.9 0.035 1.2E-06 49.9 6.0 24 253-276 28-51 (199)
339 2bme_A RAB4A, RAS-related prot 94.9 0.02 6.8E-07 50.5 4.2 24 254-277 11-34 (186)
340 3lnc_A Guanylate kinase, GMP k 94.8 0.0088 3E-07 55.7 1.8 25 253-277 27-52 (231)
341 3fmo_B ATP-dependent RNA helic 94.8 0.26 9.1E-06 47.7 12.5 52 215-269 91-147 (300)
342 1wms_A RAB-9, RAB9, RAS-relate 94.8 0.019 6.6E-07 50.1 3.8 23 254-276 8-30 (177)
343 1zj6_A ADP-ribosylation factor 94.7 0.077 2.6E-06 46.9 7.8 23 253-275 16-38 (187)
344 2a5j_A RAS-related protein RAB 94.7 0.029 9.8E-07 50.0 4.9 22 255-276 23-44 (191)
345 2gf0_A GTP-binding protein DI- 94.7 0.036 1.2E-06 49.4 5.5 23 254-276 9-31 (199)
346 2il1_A RAB12; G-protein, GDP, 94.7 0.036 1.2E-06 49.6 5.5 22 255-276 28-49 (192)
347 1rj9_A FTSY, signal recognitio 94.7 0.02 6.9E-07 56.1 4.0 25 253-277 102-126 (304)
348 4dkx_A RAS-related protein RAB 94.6 0.045 1.5E-06 50.7 6.1 22 255-276 15-36 (216)
349 2f7s_A C25KG, RAS-related prot 94.6 0.068 2.3E-06 48.5 7.3 23 254-276 26-48 (217)
350 1sky_E F1-ATPase, F1-ATP synth 94.6 0.07 2.4E-06 55.3 8.0 23 255-277 153-175 (473)
351 2g6b_A RAS-related protein RAB 94.6 0.033 1.1E-06 48.7 4.9 24 254-277 11-34 (180)
352 3kta_A Chromosome segregation 94.6 0.017 5.9E-07 51.3 3.1 25 255-279 28-52 (182)
353 2q6t_A DNAB replication FORK h 94.6 0.024 8.1E-07 58.5 4.5 38 249-286 196-237 (444)
354 2o8b_B DNA mismatch repair pro 94.6 0.066 2.3E-06 60.9 8.5 22 253-274 789-810 (1022)
355 3tif_A Uncharacterized ABC tra 94.6 0.015 5.2E-07 54.6 2.8 26 253-278 31-56 (235)
356 2bcg_Y Protein YP2, GTP-bindin 94.6 0.024 8.2E-07 51.2 4.0 23 254-276 9-31 (206)
357 1sq5_A Pantothenate kinase; P- 94.6 0.021 7.1E-07 55.9 3.8 25 254-278 81-105 (308)
358 4a82_A Cystic fibrosis transme 94.6 0.052 1.8E-06 57.9 7.2 26 252-277 366-391 (578)
359 2gf9_A RAS-related protein RAB 94.5 0.024 8.1E-07 50.5 3.8 24 254-277 23-46 (189)
360 2cbz_A Multidrug resistance-as 94.5 0.016 5.4E-07 54.6 2.7 25 253-277 31-55 (237)
361 2j37_W Signal recognition part 94.5 0.03 1E-06 58.7 5.2 34 253-286 101-137 (504)
362 2wjy_A Regulator of nonsense t 94.5 0.028 9.7E-07 62.3 5.2 24 254-277 372-395 (800)
363 1p5z_B DCK, deoxycytidine kina 94.5 0.011 3.7E-07 56.3 1.6 29 254-282 25-54 (263)
364 3ihw_A Centg3; RAS, centaurin, 94.5 0.14 4.6E-06 45.5 8.8 23 255-277 22-44 (184)
365 2va8_A SSO2462, SKI2-type heli 94.5 0.18 6.2E-06 54.9 11.5 19 253-271 46-64 (715)
366 3lxw_A GTPase IMAP family memb 94.5 0.067 2.3E-06 50.4 7.0 24 254-277 22-45 (247)
367 3aez_A Pantothenate kinase; tr 94.5 0.023 7.8E-07 55.9 3.8 26 253-278 90-115 (312)
368 3t5g_A GTP-binding protein RHE 94.4 0.028 9.5E-07 49.4 4.0 23 254-276 7-29 (181)
369 1m8p_A Sulfate adenylyltransfe 94.4 0.019 6.6E-07 61.2 3.5 34 254-287 397-434 (573)
370 1g8f_A Sulfate adenylyltransfe 94.4 0.029 9.9E-07 58.9 4.7 26 254-279 396-421 (511)
371 2xxa_A Signal recognition part 94.4 0.038 1.3E-06 56.8 5.5 36 252-287 99-138 (433)
372 3cbq_A GTP-binding protein REM 94.4 0.075 2.6E-06 47.8 6.9 22 254-275 24-45 (195)
373 3cph_A RAS-related protein SEC 94.4 0.056 1.9E-06 48.8 6.1 23 254-276 21-43 (213)
374 2ocp_A DGK, deoxyguanosine kin 94.4 0.025 8.5E-07 53.0 3.7 28 254-281 3-31 (241)
375 1m2o_B GTP-binding protein SAR 94.4 0.06 2E-06 48.1 6.2 22 254-275 24-45 (190)
376 4a1f_A DNAB helicase, replicat 94.4 0.029 1E-06 55.7 4.4 38 249-286 42-82 (338)
377 3qf4_A ABC transporter, ATP-bi 94.3 0.097 3.3E-06 55.9 8.7 27 251-277 367-393 (587)
378 2krk_A 26S protease regulatory 94.3 0.033 1.1E-06 43.8 3.7 48 387-434 7-55 (86)
379 2ew1_A RAS-related protein RAB 94.3 0.03 1E-06 50.9 4.0 23 254-276 27-49 (201)
380 3llu_A RAS-related GTP-binding 94.3 0.08 2.7E-06 47.4 6.8 24 254-277 21-44 (196)
381 3pey_A ATP-dependent RNA helic 94.3 0.18 6.1E-06 49.8 10.1 56 216-271 5-62 (395)
382 2fu5_C RAS-related protein RAB 94.3 0.018 6E-07 50.8 2.3 23 254-276 9-31 (183)
383 2onk_A Molybdate/tungstate ABC 94.3 0.023 7.9E-07 53.6 3.3 24 254-277 25-48 (240)
384 2pcj_A ABC transporter, lipopr 94.3 0.015 5.1E-07 54.2 1.9 26 253-278 30-55 (224)
385 1xjc_A MOBB protein homolog; s 94.2 0.025 8.5E-07 50.5 3.2 32 254-285 5-39 (169)
386 4edh_A DTMP kinase, thymidylat 94.2 0.028 9.5E-07 52.1 3.7 31 254-284 7-40 (213)
387 2pt7_A CAG-ALFA; ATPase, prote 94.2 0.027 9.1E-07 55.8 3.7 26 253-278 171-196 (330)
388 3b85_A Phosphate starvation-in 94.2 0.02 6.9E-07 52.8 2.6 23 254-276 23-45 (208)
389 1b0u_A Histidine permease; ABC 94.2 0.021 7.3E-07 54.6 2.8 26 253-278 32-57 (262)
390 1mv5_A LMRA, multidrug resista 94.1 0.02 6.9E-07 54.0 2.6 25 253-277 28-52 (243)
391 2pze_A Cystic fibrosis transme 94.1 0.019 6.7E-07 53.7 2.5 25 253-277 34-58 (229)
392 1sgw_A Putative ABC transporte 94.1 0.02 6.7E-07 53.2 2.4 26 253-278 35-60 (214)
393 2fh5_B SR-beta, signal recogni 94.1 0.052 1.8E-06 49.2 5.2 25 253-277 7-31 (214)
394 2f9l_A RAB11B, member RAS onco 94.1 0.027 9.3E-07 50.7 3.2 24 254-277 6-29 (199)
395 1bif_A 6-phosphofructo-2-kinas 94.1 0.014 4.9E-07 60.6 1.5 26 253-278 39-64 (469)
396 3v9p_A DTMP kinase, thymidylat 94.1 0.029 9.8E-07 52.6 3.5 24 254-277 26-49 (227)
397 3bgw_A DNAB-like replicative h 94.0 0.037 1.3E-06 57.1 4.5 39 249-287 193-234 (444)
398 2gza_A Type IV secretion syste 94.0 0.034 1.2E-06 55.7 4.1 26 253-278 175-200 (361)
399 2ghi_A Transport protein; mult 94.0 0.023 7.9E-07 54.3 2.8 25 253-277 46-70 (260)
400 2dyk_A GTP-binding protein; GT 94.0 0.031 1.1E-06 47.8 3.3 23 255-277 3-25 (161)
401 2h17_A ADP-ribosylation factor 94.0 0.063 2.2E-06 47.3 5.5 23 254-276 22-44 (181)
402 1g6h_A High-affinity branched- 94.0 0.021 7.2E-07 54.4 2.4 24 254-277 34-57 (257)
403 2olj_A Amino acid ABC transpor 94.0 0.024 8.3E-07 54.3 2.8 26 253-278 50-75 (263)
404 2ixe_A Antigen peptide transpo 94.0 0.024 8.2E-07 54.5 2.8 25 253-277 45-69 (271)
405 2zj8_A DNA helicase, putative 94.0 0.21 7.1E-06 54.5 10.6 18 253-270 39-56 (720)
406 1lw7_A Transcriptional regulat 93.9 0.027 9.1E-07 56.4 3.1 28 253-280 170-197 (365)
407 2ffh_A Protein (FFH); SRP54, s 93.9 0.069 2.4E-06 54.7 6.2 35 252-286 97-134 (425)
408 1oix_A RAS-related protein RAB 93.9 0.027 9.2E-07 50.5 2.8 23 255-277 31-53 (191)
409 2xzl_A ATP-dependent helicase 93.9 0.039 1.3E-06 61.2 4.6 23 255-277 377-399 (802)
410 2ff7_A Alpha-hemolysin translo 93.9 0.023 7.8E-07 53.9 2.4 25 253-277 35-59 (247)
411 2qi9_C Vitamin B12 import ATP- 93.9 0.023 8E-07 53.9 2.5 26 253-278 26-51 (249)
412 1w36_D RECD, exodeoxyribonucle 93.9 0.03 1E-06 60.2 3.5 25 253-277 164-188 (608)
413 3fmp_B ATP-dependent RNA helic 93.8 0.38 1.3E-05 49.4 11.8 59 216-277 92-156 (479)
414 3gfo_A Cobalt import ATP-bindi 93.8 0.024 8.2E-07 54.7 2.5 24 254-277 35-58 (275)
415 2wsm_A Hydrogenase expression/ 93.8 0.064 2.2E-06 48.9 5.3 26 253-278 30-55 (221)
416 3sop_A Neuronal-specific septi 93.8 0.027 9.1E-07 54.2 2.8 24 255-278 4-27 (270)
417 2zu0_C Probable ATP-dependent 93.8 0.032 1.1E-06 53.5 3.3 25 253-277 46-70 (267)
418 1ji0_A ABC transporter; ATP bi 93.8 0.024 8.3E-07 53.4 2.4 26 253-278 32-57 (240)
419 1j8m_F SRP54, signal recogniti 93.8 0.047 1.6E-06 53.2 4.5 35 253-287 98-135 (297)
420 1f6b_A SAR1; gtpases, N-termin 93.8 0.054 1.8E-06 48.8 4.6 22 254-275 26-47 (198)
421 1vpl_A ABC transporter, ATP-bi 93.8 0.028 9.7E-07 53.6 2.8 25 253-277 41-65 (256)
422 3fvq_A Fe(3+) IONS import ATP- 93.7 0.028 9.6E-07 56.3 2.8 24 254-277 31-54 (359)
423 2wji_A Ferrous iron transport 93.7 0.031 1.1E-06 48.7 2.8 22 255-276 5-26 (165)
424 2d2e_A SUFC protein; ABC-ATPas 93.7 0.031 1E-06 53.0 2.9 24 253-276 29-52 (250)
425 2yz2_A Putative ABC transporte 93.7 0.029 1E-06 53.7 2.8 25 253-277 33-57 (266)
426 2z0m_A 337AA long hypothetical 93.7 0.26 8.8E-06 47.5 9.7 28 254-281 32-59 (337)
427 2it1_A 362AA long hypothetical 93.7 0.034 1.2E-06 55.8 3.3 24 254-277 30-53 (362)
428 2nq2_C Hypothetical ABC transp 93.6 0.027 9.2E-07 53.6 2.4 25 253-277 31-55 (253)
429 2ihy_A ABC transporter, ATP-bi 93.6 0.027 9.3E-07 54.4 2.5 24 254-277 48-71 (279)
430 3def_A T7I23.11 protein; chlor 93.6 0.24 8.1E-06 46.9 9.1 25 253-277 36-60 (262)
431 2yyz_A Sugar ABC transporter, 93.6 0.035 1.2E-06 55.6 3.3 24 254-277 30-53 (359)
432 4g1u_C Hemin import ATP-bindin 93.6 0.027 9.1E-07 54.1 2.3 26 253-278 37-62 (266)
433 1v43_A Sugar-binding transport 93.6 0.036 1.2E-06 55.8 3.3 25 253-277 37-61 (372)
434 3tmk_A Thymidylate kinase; pho 93.6 0.043 1.5E-06 50.9 3.6 28 254-281 6-33 (216)
435 2o52_A RAS-related protein RAB 93.5 0.029 9.9E-07 50.6 2.4 23 254-276 26-48 (200)
436 3rlf_A Maltose/maltodextrin im 93.5 0.037 1.3E-06 55.9 3.3 24 254-277 30-53 (381)
437 1f2t_A RAD50 ABC-ATPase; DNA d 93.5 0.038 1.3E-06 48.0 3.0 23 255-277 25-47 (149)
438 1z47_A CYSA, putative ABC-tran 93.5 0.033 1.1E-06 55.7 2.9 24 254-277 42-65 (355)
439 2zej_A Dardarin, leucine-rich 93.5 0.029 1E-06 49.8 2.2 22 255-276 4-25 (184)
440 2www_A Methylmalonic aciduria 93.5 0.13 4.5E-06 51.1 7.2 25 253-277 74-98 (349)
441 1z08_A RAS-related protein RAB 93.4 0.044 1.5E-06 47.3 3.3 23 254-276 7-29 (170)
442 1ky3_A GTP-binding protein YPT 93.4 0.046 1.6E-06 47.7 3.3 24 254-277 9-32 (182)
443 3p32_A Probable GTPase RV1496/ 93.4 0.053 1.8E-06 54.1 4.2 32 254-285 80-114 (355)
444 3cr8_A Sulfate adenylyltranfer 93.4 0.022 7.5E-07 60.4 1.4 26 253-278 369-394 (552)
445 1q57_A DNA primase/helicase; d 93.4 0.038 1.3E-06 57.8 3.3 39 249-287 238-280 (503)
446 1g29_1 MALK, maltose transport 93.4 0.036 1.2E-06 55.8 2.9 24 254-277 30-53 (372)
447 3cpj_B GTP-binding protein YPT 93.3 0.051 1.8E-06 49.8 3.7 23 254-276 14-36 (223)
448 3k53_A Ferrous iron transport 93.3 0.096 3.3E-06 49.9 5.7 24 254-277 4-27 (271)
449 2j1l_A RHO-related GTP-binding 93.2 0.041 1.4E-06 50.2 2.9 22 254-275 35-56 (214)
450 2wjg_A FEOB, ferrous iron tran 93.2 0.044 1.5E-06 48.4 3.0 23 254-276 8-30 (188)
451 3ice_A Transcription terminati 93.2 0.25 8.4E-06 50.0 8.6 25 253-277 174-198 (422)
452 2pjz_A Hypothetical protein ST 93.2 0.039 1.3E-06 52.8 2.7 25 253-277 30-54 (263)
453 3iby_A Ferrous iron transport 93.2 0.085 2.9E-06 50.1 5.1 22 255-276 3-24 (256)
454 3t34_A Dynamin-related protein 93.1 0.36 1.2E-05 47.9 9.9 21 255-275 36-56 (360)
455 3d31_A Sulfate/molybdate ABC t 93.1 0.032 1.1E-06 55.7 2.1 25 253-277 26-50 (348)
456 2lkc_A Translation initiation 93.1 0.06 2.1E-06 46.9 3.7 24 253-276 8-31 (178)
457 1svi_A GTP-binding protein YSX 93.0 0.026 8.8E-07 50.3 1.1 24 253-276 23-46 (195)
458 1tq4_A IIGP1, interferon-induc 93.0 0.078 2.7E-06 54.1 4.8 23 255-277 71-93 (413)
459 1ls1_A Signal recognition part 93.0 0.13 4.5E-06 49.9 6.2 34 253-286 98-134 (295)
460 2f1r_A Molybdopterin-guanine d 93.0 0.025 8.5E-07 50.5 0.9 24 255-278 4-27 (171)
461 1upt_A ARL1, ADP-ribosylation 93.0 0.068 2.3E-06 46.1 3.8 23 254-276 8-30 (171)
462 3gj0_A GTP-binding nuclear pro 93.0 0.076 2.6E-06 48.5 4.3 23 254-276 16-39 (221)
463 2bbs_A Cystic fibrosis transme 93.0 0.037 1.3E-06 53.8 2.3 25 253-277 64-88 (290)
464 3eiq_A Eukaryotic initiation f 92.9 0.61 2.1E-05 46.4 11.3 52 216-270 40-94 (414)
465 4djt_A GTP-binding nuclear pro 92.9 0.022 7.5E-07 51.9 0.5 22 254-275 12-33 (218)
466 3b1v_A Ferrous iron uptake tra 92.8 0.15 5.1E-06 48.9 6.3 23 254-276 4-26 (272)
467 2qe7_A ATP synthase subunit al 92.8 0.32 1.1E-05 50.6 9.1 61 255-315 164-230 (502)
468 3ld9_A DTMP kinase, thymidylat 92.8 0.056 1.9E-06 50.4 3.2 26 254-279 22-47 (223)
469 1yrb_A ATP(GTP)binding protein 92.8 0.076 2.6E-06 49.9 4.2 32 254-285 15-48 (262)
470 3gd7_A Fusion complex of cysti 92.8 0.046 1.6E-06 55.4 2.7 25 253-277 47-71 (390)
471 4f4c_A Multidrug resistance pr 92.8 0.23 7.9E-06 58.1 9.0 27 251-277 1103-1129(1321)
472 1tf7_A KAIC; homohexamer, hexa 92.8 0.045 1.5E-06 57.7 2.7 28 250-277 36-65 (525)
473 3lv8_A DTMP kinase, thymidylat 92.7 0.057 1.9E-06 50.8 3.1 24 254-277 28-51 (236)
474 3r7w_A Gtpase1, GTP-binding pr 92.7 0.15 5.1E-06 49.7 6.2 24 253-276 3-26 (307)
475 2qm8_A GTPase/ATPase; G protei 92.7 0.068 2.3E-06 53.0 3.7 25 253-277 55-79 (337)
476 4tmk_A Protein (thymidylate ki 92.7 0.052 1.8E-06 50.2 2.7 24 254-277 4-27 (213)
477 1oxx_K GLCV, glucose, ABC tran 92.7 0.032 1.1E-06 55.8 1.3 24 254-277 32-55 (353)
478 1ko7_A HPR kinase/phosphatase; 92.6 0.071 2.4E-06 52.3 3.8 29 253-282 144-172 (314)
479 2npi_A Protein CLP1; CLP1-PCF1 92.6 0.061 2.1E-06 55.7 3.4 27 251-277 136-162 (460)
480 2gj8_A MNME, tRNA modification 92.6 0.051 1.7E-06 47.8 2.5 23 254-276 5-27 (172)
481 2hf9_A Probable hydrogenase ni 92.6 0.12 4.2E-06 47.2 5.1 25 253-277 38-62 (226)
482 1m7b_A RND3/RHOE small GTP-bin 92.5 0.058 2E-06 47.7 2.8 23 254-276 8-30 (184)
483 3tw8_B RAS-related protein RAB 92.5 0.064 2.2E-06 46.7 3.0 23 254-276 10-32 (181)
484 1knx_A Probable HPR(Ser) kinas 92.4 0.055 1.9E-06 53.1 2.7 29 253-282 147-175 (312)
485 3nh6_A ATP-binding cassette SU 92.4 0.037 1.3E-06 54.2 1.4 27 251-277 78-104 (306)
486 3tui_C Methionine import ATP-b 92.4 0.068 2.3E-06 53.6 3.3 25 253-277 54-78 (366)
487 2orv_A Thymidine kinase; TP4A 92.4 0.52 1.8E-05 44.0 9.1 31 254-284 20-53 (234)
488 2obl_A ESCN; ATPase, hydrolase 92.4 0.083 2.8E-06 52.6 3.9 28 254-281 72-99 (347)
489 2gks_A Bifunctional SAT/APS ki 92.3 0.092 3.2E-06 55.6 4.5 33 254-286 373-408 (546)
490 1pui_A ENGB, probable GTP-bind 92.3 0.03 1E-06 50.6 0.6 25 253-277 26-50 (210)
491 2r9v_A ATP synthase subunit al 92.3 0.28 9.7E-06 51.0 7.9 61 255-315 177-243 (515)
492 3bwd_D RAC-like GTP-binding pr 92.3 0.079 2.7E-06 46.3 3.3 23 254-276 9-31 (182)
493 1mh1_A RAC1; GTP-binding, GTPa 92.3 0.076 2.6E-06 46.5 3.2 23 254-276 6-28 (186)
494 3c5c_A RAS-like protein 12; GD 92.3 0.08 2.7E-06 47.1 3.3 22 255-276 23-44 (187)
495 1fx0_A ATP synthase alpha chai 92.3 0.3 1E-05 50.8 8.0 60 256-315 166-231 (507)
496 2cxx_A Probable GTP-binding pr 92.2 0.053 1.8E-06 47.8 2.1 22 255-276 3-24 (190)
497 2vp4_A Deoxynucleoside kinase; 92.2 0.079 2.7E-06 49.2 3.4 29 254-283 21-49 (230)
498 2rcn_A Probable GTPase ENGC; Y 92.2 0.062 2.1E-06 53.8 2.8 25 254-278 216-240 (358)
499 1vg8_A RAS-related protein RAB 92.2 0.082 2.8E-06 47.4 3.3 25 253-277 8-32 (207)
500 4hlc_A DTMP kinase, thymidylat 92.1 0.11 3.7E-06 47.7 4.1 30 255-284 4-35 (205)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-40 Score=338.77 Aligned_cols=213 Identities=25% Similarity=0.315 Sum_probs=180.1
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc--
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-- 290 (473)
.+..+|++|+|.+++|++|.+.+..++.+++.|++.|.++++|+|||||||||||+||+|+|++++.+++.++++++.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 455899999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
++..++.+|..+. .||||||||||+++..+.... .+.+.....++++||+.|||+.+. .+++||+
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~-------~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIa 292 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS-------GGGDSEVQRTMLELLNQLDGFETS--KNIKIIM 292 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSS-------SGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEE
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCC-------CCCcHHHHHHHHHHHHhhhccCCC--CCeEEEe
Confidence 3467888888774 799999999999986332211 122345678899999999999765 4599999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC-CCCHHHHHHHHh
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT-QVTPAEVAEQLM 434 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~t~a~i~~~l~ 434 (473)
|||+|+.|||||+||||||++|+|++|+.++|.+||+.++.........++..++..+ ++|+|||..+|.
T Consensus 293 ATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~ 363 (405)
T 4b4t_J 293 ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCT 363 (405)
T ss_dssp EESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred ccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999998754322222344444433 699999988773
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-40 Score=336.04 Aligned_cols=215 Identities=23% Similarity=0.325 Sum_probs=180.1
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc
Q 012016 211 NLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR 290 (473)
Q Consensus 211 ~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~ 290 (473)
.-.+..+|++|+|.+++|++|.+.+..|+.+++.|.+.|.+|++|||||||||||||+||+|+|++++.+++.++.+++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred ------CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEE
Q 012016 291 ------SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERII 362 (473)
Q Consensus 291 ------~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ii 362 (473)
++..++.+|..+. .||||||||||+++..+. ... .+.+.....++++||+.|||+... ++++|
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~--~~~-----~~~~~~~~~~l~~LL~~lDg~~~~--~~ViV 324 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRY--DSN-----SGGEREIQRTMLELLNQLDGFDDR--GDVKV 324 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCS--CSS-----CSSCCHHHHHHHHHHHHHHHCCCS--SSEEE
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCC--CCC-----CCccHHHHHHHHHHHHHhhCcCCC--CCEEE
Confidence 3456788887764 789999999999986332 211 122345678999999999998654 56999
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhc-CCCCHHHHHHHHh
Q 012016 363 VFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIST-TQVTPAEVAEQLM 434 (473)
Q Consensus 363 I~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~t~a~i~~~l~ 434 (473)
|+|||+|+.|||||+||||||++|+|++|+.++|.+||+.++.........+++.++.. .++|+|||..+|.
T Consensus 325 IaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 397 (437)
T 4b4t_I 325 IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCT 397 (437)
T ss_dssp EEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred EEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875432222233444433 3699999988774
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-39 Score=334.62 Aligned_cols=231 Identities=23% Similarity=0.317 Sum_probs=186.7
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc--
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-- 290 (473)
.+..+|++|+|.+++|++|.+.+..++.+++.|.+.|.+|++|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
+...++.+|..+. .||||||||||+++..+. ... ...+.....++++||+.|||+.+. ++++||+
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~--~~~-----~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ 325 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRF--SEG-----TSADREIQRTLMELLTQMDGFDNL--GQTKIIM 325 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCS--SSC-----CSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEE
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeecccccccccc--cCC-----CCcchHHHHHHHHHHHHhhcccCC--CCeEEEE
Confidence 2456788887664 799999999999986332 111 122344577899999999999765 4699999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC-CCCHHHHHHHHhc-------C
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT-QVTPAEVAEQLMR-------N 436 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~t~a~i~~~l~~-------~ 436 (473)
|||+|+.|||||+||||||.+|+||+|+.++|..||+.++.........++..++..+ ++|+|||..+|.. .
T Consensus 326 ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~ 405 (437)
T 4b4t_L 326 ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD 405 (437)
T ss_dssp EESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred ecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998654322222344444433 6999999887742 2
Q ss_pred CCHHHHHHHHHHHHHH
Q 012016 437 DDPELVLNGLIEFLKV 452 (473)
Q Consensus 437 ~~~~~al~~l~~~l~~ 452 (473)
+......+++..++++
T Consensus 406 ~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 406 DRDHINPDDLMKAVRK 421 (437)
T ss_dssp TCSSBCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 2222334555555543
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-39 Score=336.77 Aligned_cols=213 Identities=23% Similarity=0.336 Sum_probs=179.6
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc
Q 012016 211 NLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR 290 (473)
Q Consensus 211 ~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~ 290 (473)
.-.++.+|++|+|.+++|++|.+.+..|+.+++.|++.|.++++|||||||||||||++|+|+|++++.+++.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ------CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEE
Q 012016 291 ------SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERII 362 (473)
Q Consensus 291 ------~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ii 362 (473)
+...++.+|..+. .||||||||+|+++.. |..... +.......++++||+.|||+.+. ++++|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~--R~~~~~-----~~~~~~~~~~~~lL~~ldg~~~~--~~ViV 323 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTK--RFDSEK-----SGDREVQRTMLELLNQLDGFSSD--DRVKV 323 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCC--CSSGGG-----GTTHHHHHHHHHHHHHHTTSCSS--CSSEE
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhc--cCCCCC-----CCchHHHHHHHHHHHHhhccCCC--CCEEE
Confidence 2456788887664 7999999999999863 322111 12334567899999999999765 46999
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc---cCCHHHHHHHHhcCCCCHHHHHHHHh
Q 012016 363 VFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE---HILFEEIEELISTTQVTPAEVAEQLM 434 (473)
Q Consensus 363 I~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~---~~l~~~i~~l~~~~~~t~a~i~~~l~ 434 (473)
|+|||+|+.|||||+||||||.+|+||+|+.++|.+||+.++.... ....++++...+ ++|+|||..+|.
T Consensus 324 IaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~--G~sGADi~~l~~ 396 (434)
T 4b4t_M 324 LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTD--EFNGAQLKAVTV 396 (434)
T ss_dssp EEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCS--SCCHHHHHHHHH
T ss_pred EEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCC--CCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999998886432 233445544433 699999988874
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-39 Score=332.84 Aligned_cols=214 Identities=25% Similarity=0.372 Sum_probs=179.6
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc-
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR- 290 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~- 290 (473)
-.+..+|++|+|.+++|++|.+.+..|+.+++.|.+.|++|++|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 3556899999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred -----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEE
Q 012016 291 -----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIV 363 (473)
Q Consensus 291 -----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI 363 (473)
+...++.+|..+. .||||||||+|+++..+. ... .+.+....+++++||+.|||+.+. .+++||
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~--~~~-----~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI 315 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRF--DAQ-----TGSDREVQRILIELLTQMDGFDQS--TNVKVI 315 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCS--SSC-----SCCCCHHHHHHHHHHHHHHHSCSS--CSEEEE
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhcccc--CCC-----CCCChHHHHHHHHHHHHhhCCCCC--CCEEEE
Confidence 3467888888764 789999999999986332 111 122345678999999999999776 459999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeC-CCCHHHHHHHHHHHhCccccCCHHHHHHHHhc-CCCCHHHHHHHHh
Q 012016 364 FTTNHKEKLDPALLRPGRMDVHVHMS-YCTPSGFKLLAANYLGIKEHILFEEIEELIST-TQVTPAEVAEQLM 434 (473)
Q Consensus 364 ~tTN~~~~ld~aLlrpgRfd~~I~~~-~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~t~a~i~~~l~ 434 (473)
+|||+|+.|||||+||||||++|+|| +|+.++|..|++.++.........++..++.. .++|+|||..+|.
T Consensus 316 ~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~ 388 (428)
T 4b4t_K 316 MATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQ 388 (428)
T ss_dssp EEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred EecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHH
Confidence 99999999999999999999999997 89999999999998865432222234444443 3699999988874
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-38 Score=329.45 Aligned_cols=214 Identities=26% Similarity=0.315 Sum_probs=180.6
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc
Q 012016 210 VNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL 289 (473)
Q Consensus 210 ~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~ 289 (473)
+.-.+..+|++|+|.+++|++|.+.+..++.+++.|.++|+++++|+|||||||||||+||+|+|++++.+++.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 33456689999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c------CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceE
Q 012016 290 R------SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERI 361 (473)
Q Consensus 290 ~------~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~i 361 (473)
. ++..++.+|..+. .||||||||+|.++..+.. .. .+.......+++.||+.|||.... .+++
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~--~~-----~~~~~~~~~~l~~lL~~lDg~~~~--~~Vi 350 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFD--DG-----AGGDNEVQRTMLELITQLDGFDPR--GNIK 350 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSS--SS-----CGGGGHHHHHHHHHHHHHHSSCCT--TTEE
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccC--cC-----CCccHHHHHHHHHHHHHhhccCCC--CcEE
Confidence 4 3467888888764 7899999999999863321 11 122345567899999999998654 5699
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcccc---CCHHHHHHHHhcCCCCHHHHHHHHh
Q 012016 362 IVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEH---ILFEEIEELISTTQVTPAEVAEQLM 434 (473)
Q Consensus 362 iI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~---~l~~~i~~l~~~~~~t~a~i~~~l~ 434 (473)
||+|||+|+.|||||+||||||++|+|++|+.++|.+||+.++..... ...+.++...+ ++|+|||..+|.
T Consensus 351 VIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~--GfSGADI~~l~~ 424 (467)
T 4b4t_H 351 VMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCP--NSTGAELRSVCT 424 (467)
T ss_dssp EEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCC--SCCHHHHHHHHH
T ss_pred EEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCC--CCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999875432 33445554443 699999988774
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.8e-34 Score=315.39 Aligned_cols=213 Identities=22% Similarity=0.308 Sum_probs=160.4
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc---
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL--- 289 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~--- 289 (473)
.++.+|++++|.+++|++|.+.+..++++++.|.+.|..+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred ---cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 290 ---RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 290 ---~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
.++..++++|..+. .||||||||||+++..|+.... .......+++++||.+|||+.+. .+++||+
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~-------~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~ 621 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG-------DGGGAADRVINQILTEMDGMSTK--KNVFIIG 621 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------------------CHHHHHHHHHHHSSCSS--SSEEEEC
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCC-------CCchHHHHHHHHHHHHHhCCCCC--CCEEEEE
Confidence 35678999998875 6899999999999873321111 12334578999999999999665 4599999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC-CCCHHHHHHHHh
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT-QVTPAEVAEQLM 434 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~t~a~i~~~l~ 434 (473)
|||+|+.||||++||||||.+|++++|+.++|.+||+.++.........++..+++.+ ++|+|||.++|.
T Consensus 622 aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp C-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHH
T ss_pred eCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999998765333333455555543 699999998874
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.4e-32 Score=301.14 Aligned_cols=209 Identities=22% Similarity=0.317 Sum_probs=178.3
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc---
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR--- 290 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~--- 290 (473)
+..+|++|+|.++++++|.+.+..++.+++.|..+|..+++|+|||||||||||+||+++|++++.+++.++++++.
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999988863
Q ss_pred ---CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEe
Q 012016 291 ---SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFT 365 (473)
Q Consensus 291 ---~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 365 (473)
++..++.+|..+. .||||||||||.+++.++ . ......++++++||..||++.+. .+++||+|
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~--~--------~~~~~~~riv~~LL~~mdg~~~~--~~V~VIaa 346 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--K--------THGEVERRIVSQLLTLMDGLKQR--AHVIVMAA 346 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTT--T--------CCCTTHHHHHHHHHTHHHHCCGG--GCEEEEEE
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccC--C--------CCChHHHHHHHHHHHHHhccccc--CCEEEEEe
Confidence 3467888998775 689999999999986322 1 12334578999999999999765 45999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhc-CCCCHHHHHHHHh
Q 012016 366 TNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIST-TQVTPAEVAEQLM 434 (473)
Q Consensus 366 TN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~t~a~i~~~l~ 434 (473)
||+++.|||||+||||||.+|+++.|+.++|.+|++.++.........++..++.. .+++++|+..+|-
T Consensus 347 TN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~ 416 (806)
T 3cf2_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp CSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred cCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999875533333344445443 3699999988763
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=1.2e-28 Score=244.98 Aligned_cols=211 Identities=21% Similarity=0.322 Sum_probs=172.3
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc--
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-- 290 (473)
.++.+|++|+|.+++++.|.+.+..++..++.|...|.++++++|||||||||||++++++|++++.+++.+++.++.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999987762
Q ss_pred ----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
....++.+|..+. .++||||||||.+...+..... .........++.||..||++... .+++||+
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~-------~~~~~~~~~~~~lL~~l~~~~~~--~~v~vi~ 159 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG-------DGGGAADRVINQILTEMDGMSTK--KNVFIIG 159 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTC-------CSSCSCCHHHHHHHHHHHSSCTT--SSEEEEE
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcC-------CcchHHHHHHHHHHHHhhcccCC--CCEEEEE
Confidence 3456777787664 5799999999998763321110 11123456788999999987543 4699999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcccc---CCHHHHHHHHhcCCCCHHHHHHHHh
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEH---ILFEEIEELISTTQVTPAEVAEQLM 434 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~---~l~~~i~~l~~~~~~t~a~i~~~l~ 434 (473)
|||+++.+|++++|||||+..|+++.|+.++|..|++.++..... ...+.++.. ..+++++|+..+|-
T Consensus 160 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~--~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 160 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM--TNGFSGADLTEICQ 230 (301)
T ss_dssp EESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHT--CSSCCHHHHHHHHH
T ss_pred ecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHH--cCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999875432 223344432 34699999988763
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=240.51 Aligned_cols=209 Identities=20% Similarity=0.308 Sum_probs=162.3
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC--
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS-- 291 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~-- 291 (473)
+..+|++|+|.+++|+.|.+.+..++.+++.++.+|..+++|++|+||||||||+|++++|+.++.+++.++..++..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 347899999999999999999999999999999999999999999999999999999999999999999998877632
Q ss_pred ----chHHHHHHHHh--ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEe
Q 012016 292 ----NSDLRTLLVAT--ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFT 365 (473)
Q Consensus 292 ----~~~l~~l~~~~--~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 365 (473)
...+..+|..+ ..++++|+||+|.+...+. .. ........++.++..|+|.... ..++++++
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~--~~--------~~~~~~~~~~~~l~~Lsgg~~~--~~~i~ia~ 152 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRS--DR--------ETGASVRVVNQLLTEMDGLEAR--QQVFIMAA 152 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------------CTTHHHHHHHHHHTCCST--TCEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccC--CC--------cchHHHHHHHHHHHhhhccccc--CCEEEEee
Confidence 23566777764 3689999999999864221 11 0112345788999999997543 45889999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccc---cCCHHHHHHHHhc---CCCCHHHHHHHHh
Q 012016 366 TNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKE---HILFEEIEELIST---TQVTPAEVAEQLM 434 (473)
Q Consensus 366 TN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~---~~l~~~i~~l~~~---~~~t~a~i~~~l~ 434 (473)
||+|+.|||+++||||||.+|++++|+.++|..|++.++.... .....+++.++.. .++|+|||..+|-
T Consensus 153 tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 153 TNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp ESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred cCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999885321 1112234444443 3899999988773
No 11
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=1e-28 Score=259.11 Aligned_cols=211 Identities=25% Similarity=0.361 Sum_probs=166.9
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC--
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS-- 291 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~-- 291 (473)
.+.+|++|+|.++.++++.+.+. ++..+..|..+|...++|+||+||||||||+|++++|++++.+++.++++++..
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 34689999999999999987654 678889999999999999999999999999999999999999999999887632
Q ss_pred ----chHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEe
Q 012016 292 ----NSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFT 365 (473)
Q Consensus 292 ----~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 365 (473)
...++.+|..+. .|+||||||||.+...+. .. ..+.+.....+++.||..||++... .+++||+|
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~--~~-----~~g~~~~~~~~l~~LL~~ld~~~~~--~~viVIaa 160 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG--AG-----LGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAA 160 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------------CHHHHHHHHHHHHHHHSCGG--GTEEEEEE
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcc--cc-----cCcCcHHHHHHHHHHHHHHhccCCC--CCEEEEEe
Confidence 345677777664 689999999999965221 11 0122344567899999999987543 45999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhc-CCCCHHHHHHHHh
Q 012016 366 TNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIST-TQVTPAEVAEQLM 434 (473)
Q Consensus 366 TN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~t~a~i~~~l~ 434 (473)
||+++.|||+++||||||..|.++.|+.++|..|++.++.........++..+... .+++++|+.++|-
T Consensus 161 Tn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 161 TNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999998875422211223334443 3689999977653
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.95 E-value=5.7e-27 Score=235.27 Aligned_cols=206 Identities=21% Similarity=0.281 Sum_probs=169.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-CCceEEccccccc--
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELTELR-- 290 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-~~~~~~l~~~~~~-- 290 (473)
++.+|++|+|.+++|+.|.+.+..+++.++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++++.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 4578999999999999999999999999888874 35667899999999999999999999999 8999999988763
Q ss_pred ----CchHHHHHHHHh--ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVAT--ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~--~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
....++.+|..+ .+++||||||||.+...+. . .........+++||..||++... ..+++||+
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~--~--------~~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~ 154 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS--E--------NESEAARRIKTEFLVQMQGVGVD-NDGILVLG 154 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSS--S--------CCTTHHHHHHHHHHHHHHCSSSC-CTTEEEEE
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccc--c--------ccchHHHHHHHHHHHHHhccccc-CCCEEEEE
Confidence 235677777665 3689999999999975221 1 11234567889999999997532 35699999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccC-CHHHHHHHHhcC-CCCHHHHHHHH
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHI-LFEEIEELISTT-QVTPAEVAEQL 433 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~-l~~~i~~l~~~~-~~t~a~i~~~l 433 (473)
|||+++.+|++++| ||+..|+++.|+.++|..|++.++...... ...++..++..+ +++++++..+|
T Consensus 155 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 155 ATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred ecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999 999999999999999999999998765443 355667777654 69999998877
No 13
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=4.4e-27 Score=230.90 Aligned_cols=214 Identities=25% Similarity=0.300 Sum_probs=170.6
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS 291 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~ 291 (473)
..++.+|++|+|.+++++.|.+.+..++..++.|...|...++++||+||||||||++++++|+.++.+++.+++..+..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred ------chHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEE
Q 012016 292 ------NSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIV 363 (473)
Q Consensus 292 ------~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI 363 (473)
...+..++..+. .++||||||+|.+...+ .... .+........+..+++.+++.... .+++||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~--~~~~-----~~~~~~~~~~l~~ll~~~~~~~~~--~~~~vI 160 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKR--TDAL-----TGGDREVQRTLMQLLAEMDGFDAR--GDVKII 160 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCC--SSSC-----CGGGGHHHHHHHHHHHHHHTTCSS--SSEEEE
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccC--cccc-----CCccHHHHHHHHHHHHHhhCCCCC--CCEEEE
Confidence 234555665543 57899999999997522 1110 112334567888889988876443 469999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhc-CCCCHHHHHHHHh
Q 012016 364 FTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIST-TQVTPAEVAEQLM 434 (473)
Q Consensus 364 ~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~t~a~i~~~l~ 434 (473)
+|||.++.+|++++|||||+..++++.|+.++|.+|++.++.........++..+... .+++++++..++.
T Consensus 161 ~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 161 GATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp EECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred EeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999998875433222234444432 3589999877653
No 14
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=6e-27 Score=226.61 Aligned_cols=211 Identities=23% Similarity=0.328 Sum_probs=153.1
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC---
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS--- 291 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~--- 291 (473)
+.+|++++|.+++++.+.+.+. ++..++.|...|...++++|||||||||||++++++|++++.+++.++++.+..
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 4789999999999999977654 578888899999999999999999999999999999999999999999887632
Q ss_pred ---chHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEec
Q 012016 292 ---NSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTT 366 (473)
Q Consensus 292 ---~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 366 (473)
...++.+|..+. .++||||||+|.+...+..... ..........+..|++.+++... ...+++|+||
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~------~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~t 152 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMS------GFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLAST 152 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------------CHHHHHHHHHHHTCCT--TCCEEEEEEE
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcccccccc------CccchhHHHHHHHHHHHhhCcCC--CCCEEEEecC
Confidence 245666666554 5899999999998652211000 01123345678899999998643 3469999999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHH--HHHHHhc-CCCCHHHHHHHHh
Q 012016 367 NHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEE--IEELIST-TQVTPAEVAEQLM 434 (473)
Q Consensus 367 N~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~--i~~l~~~-~~~t~a~i~~~l~ 434 (473)
|.++.+|++++|||||+..++++.|+.++|..|++.++.........+ +..+... .+++++++..++-
T Consensus 153 n~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 153 NRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp SCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999987543333322 2344443 3689999877653
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=8.7e-27 Score=233.76 Aligned_cols=209 Identities=20% Similarity=0.274 Sum_probs=169.8
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc-
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR- 290 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~- 290 (473)
..++.+|++|+|.+++|+.|.+.+..++..++.+.. +..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 456689999999999999999999999988888776 455678999999999999999999999999999999988763
Q ss_pred -----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEE
Q 012016 291 -----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIV 363 (473)
Q Consensus 291 -----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI 363 (473)
....++.+|..+. +++||||||||.+...+.. +.........+.|+..|+++... ...++||
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~----------~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi 158 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE----------GESEASRRIKTELLVQMNGVGND-SQGVLVL 158 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----------------CCTHHHHHHHHHHHGGGGTS-CCCEEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC----------CcchHHHHHHHHHHHHhcccccc-CCceEEE
Confidence 2345666666553 6799999999999752211 12234577889999999998543 3469999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccC-CHHHHHHHHhcC-CCCHHHHHHHHh
Q 012016 364 FTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHI-LFEEIEELISTT-QVTPAEVAEQLM 434 (473)
Q Consensus 364 ~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~-l~~~i~~l~~~~-~~t~a~i~~~l~ 434 (473)
+|||+++.||++++| ||+..|+++.|+.++|..|++.++...... ....+..+...+ ++++++|..+|-
T Consensus 159 ~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 159 GATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999 999999999999999999999998865443 345667676654 699999987763
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=2.6e-26 Score=222.40 Aligned_cols=212 Identities=23% Similarity=0.350 Sum_probs=161.5
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc--
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-- 290 (473)
.++.+|++++|.+++++.+.+.+ .++..++.|+..|...++|+||+||||||||++++++|+.++.+++.++++++.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 45679999999999999998765 467788889999999999999999999999999999999999999999988763
Q ss_pred ----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
....++.+|..+. .++++||||+|.+...+. ... .+........++.+|..++++... ..++||+
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~--~~~-----~~~~~~~~~~~~~ll~~l~~~~~~--~~~~vI~ 155 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG--AGL-----GGGHDEREQTLNQMLVEMDGFEGN--EGIIVIA 155 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCS--TTS-----CCTTCHHHHHHHHHHHHHHTCCSS--SCEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCC--CCc-----CCCchHHHHHHHHHHHHhhCcccC--CCEEEEE
Confidence 2355777777664 468999999999865211 110 112233457889999999987543 4599999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC-CCCHHHHHHHHh
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT-QVTPAEVAEQLM 434 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~t~a~i~~~l~ 434 (473)
|||+++.+|++++|||||+..++++.|+.++|.+|++.++..........+..+.... +++++|+...+.
T Consensus 156 ~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 156 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp EESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred eeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999988643221112233333333 579999987653
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=3.6e-26 Score=232.46 Aligned_cols=207 Identities=20% Similarity=0.284 Sum_probs=166.3
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc--
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-- 290 (473)
.++.+|++|+|.+++++.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 34578999999999999999999999998888876 566778999999999999999999999999999999988762
Q ss_pred ----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
....++.+|..+. .++||||||||.+...+. . +.........+.||..|+++... ...++||+
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~--~--------~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~ 192 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG--E--------GESEASRRIKTELLVQMNGVGND-SQGVLVLG 192 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------------CTHHHHHHHHHHHHHHHCC----CCEEEEE
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCC--C--------CcchHHHHHHHHHHHHhhccccc-CCCeEEEe
Confidence 2345666776553 789999999999865221 1 12234567889999999987532 34699999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccC-CHHHHHHHHhcC-CCCHHHHHHHH
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHI-LFEEIEELISTT-QVTPAEVAEQL 433 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~-l~~~i~~l~~~~-~~t~a~i~~~l 433 (473)
|||+++.||++++| ||+..++++.|+.++|..|+..++...... ...++..++..+ ++++++|..+|
T Consensus 193 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 193 ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999 999999999999999999999998765433 345666666544 68999998876
No 18
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.94 E-value=1.9e-26 Score=243.21 Aligned_cols=211 Identities=24% Similarity=0.335 Sum_probs=165.6
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC--
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS-- 291 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~-- 291 (473)
++.+|++|+|.++.++++.+.+ .++..+..|..+|...++|+||+||||||||+|++++|++++.+++.++++++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv-~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHH-HHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHH-HHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 5679999999999999987755 4677888899999999999999999999999999999999999999999887632
Q ss_pred ----chHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEe
Q 012016 292 ----NSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFT 365 (473)
Q Consensus 292 ----~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 365 (473)
...++.+|..+. .++|+||||||.+...+. ... .+.......+++.||..|+|.... ..+++|++
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~--~~~-----~~~~~e~~~~l~~LL~~Ldg~~~~--~~viviAa 175 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG--SGV-----GGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAA 175 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSS--SST-----TTSSHHHHHHHHHHHHHGGGCCSS--CCCEEEEC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhc--cCc-----CCCcHHHHHHHHHHHHHhcccccC--ccEEEEEe
Confidence 234666776654 579999999999864221 100 112334467889999999987543 45899999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC-CCCHHHHHHHHh
Q 012016 366 TNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT-QVTPAEVAEQLM 434 (473)
Q Consensus 366 TN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~t~a~i~~~l~ 434 (473)
||+|+.|||+++||||||.+|+++.|+.++|.+|++.++.........++..+.... +++++|+.++|-
T Consensus 176 tn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~ 245 (499)
T 2dhr_A 176 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 245 (499)
T ss_dssp CSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHH
T ss_pred cCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999887643221122233344433 688899877753
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=7.5e-26 Score=238.85 Aligned_cols=208 Identities=23% Similarity=0.326 Sum_probs=171.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC--
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS-- 291 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~-- 291 (473)
.+.+|++|+|.+..++.|.+.+..++..++.|..+|.++++++|||||||||||++|+++|++++.+++.++++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred ----chHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEe
Q 012016 292 ----NSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFT 365 (473)
Q Consensus 292 ----~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 365 (473)
...++.+|..+. .++||||||||.+...+.. .........++.||..|++.... ..++||+|
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~----------~~~~~~~~~~~~LL~~ld~~~~~--~~v~vIaa 346 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----------THGEVERRIVSQLLTLMDGLKQR--AHVIVMAA 346 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS----------CCCHHHHHHHHHHHHHHHHSCTT--SCEEEEEE
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc----------ccchHHHHHHHHHHHHhhccccC--CceEEEEe
Confidence 345677777664 5689999999999762211 11234567889999999987543 46999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhc-CCCCHHHHHHHH
Q 012016 366 TNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIST-TQVTPAEVAEQL 433 (473)
Q Consensus 366 TN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~t~a~i~~~l 433 (473)
||+++.||++++|+|||+..|+++.|+.++|..|++.++.........++..++.. .+++++++..+|
T Consensus 347 Tn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp ESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred cCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHH
Confidence 99999999999999999999999999999999999998875433222234444443 369999998775
No 20
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.93 E-value=2.3e-25 Score=232.97 Aligned_cols=208 Identities=21% Similarity=0.262 Sum_probs=167.2
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-CCceEEccccccc-
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELTELR- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-~~~~~~l~~~~~~- 290 (473)
.++.+|++|+|.+++++.|.+.+..++..++.|.. +..+++++|||||||||||++|+++|+++ +.+++.++++++.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 45679999999999999999999989988887764 34567899999999999999999999999 8999999988763
Q ss_pred -----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEE
Q 012016 291 -----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIV 363 (473)
Q Consensus 291 -----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI 363 (473)
....++.+|..+. .++||||||||.+...+. . .........++.||..|+++... ..+++||
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~--~--------~~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI 275 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS--E--------NESEAARRIKTEFLVQMQGVGVD-NDGILVL 275 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSS--C--------CCCGGGHHHHHHHHTTTTCSSCC-CSSCEEE
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCC--C--------ccccHHHHHHHHHHHHHhCcccC-CCCEEEE
Confidence 2345677776553 689999999999875221 1 12334567889999999997532 3569999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccC-CHHHHHHHHhcC-CCCHHHHHHHHh
Q 012016 364 FTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHI-LFEEIEELISTT-QVTPAEVAEQLM 434 (473)
Q Consensus 364 ~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~-l~~~i~~l~~~~-~~t~a~i~~~l~ 434 (473)
+|||.++.||++++| ||+..|+++.|+.++|..|++.++...... ...++..++..+ ++++++|..+|-
T Consensus 276 ~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 276 GATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999 999999999999999999999998765432 345666666544 699999988763
No 21
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.92 E-value=3e-26 Score=223.15 Aligned_cols=212 Identities=25% Similarity=0.353 Sum_probs=158.4
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC--
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS-- 291 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~-- 291 (473)
++.+|++++|.++.++.+.+.+. ++..++.|...|...++|+||+||||||||++|+++|++++.+++.++++.+..
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 45789999999999999988655 688889999999999999999999999999999999999999999998877531
Q ss_pred ----chHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEe
Q 012016 292 ----NSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFT 365 (473)
Q Consensus 292 ----~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 365 (473)
...++.+|..+. .++||||||+|.+...+..... ...+......++.|++.+++.... ...++||+|
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~------~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~t 157 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV------VSGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAA 157 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------------CCCSCSSTTTTTTTTTCSSCS-CSCCEEEEC
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhccccccccc------CCCchhHHHHHHHHHHHhhCcccC-CCCEEEEEe
Confidence 233444554443 5799999999999652211000 011122344667788888876432 345899999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhc-CCCCHHHHHHHH
Q 012016 366 TNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIST-TQVTPAEVAEQL 433 (473)
Q Consensus 366 TN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~t~a~i~~~l 433 (473)
||.++.+|++++|+|||+..|+++.|+.++|..+++.++..........+..+... .+++++++..++
T Consensus 158 tn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~ 226 (268)
T 2r62_A 158 TNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANII 226 (268)
T ss_dssp BSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHH
T ss_pred cCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999998864322111122333332 258888887765
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=223.26 Aligned_cols=211 Identities=25% Similarity=0.333 Sum_probs=165.2
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc
Q 012016 210 VNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL 289 (473)
Q Consensus 210 ~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~ 289 (473)
+...++.+|++|+|.+.+++.|.+.+..+...++.|...+. +++++|||||||||||++|+++|++++.+++.++++.+
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 33567789999999999999999999999888888887764 47899999999999999999999999999999999886
Q ss_pred cC------chHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceE
Q 012016 290 RS------NSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERI 361 (473)
Q Consensus 290 ~~------~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~i 361 (473)
.. ...++.+|..+. +++||||||||.++..+. .+........+..|+..+++........++
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~----------~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR----------EGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCC----------CccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 32 344566665543 579999999999975221 112234577888999999998765556799
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCC-HHHHHHHHhcC-CCCHHHHHHHH
Q 012016 362 IVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHIL-FEEIEELISTT-QVTPAEVAEQL 433 (473)
Q Consensus 362 iI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~t~a~i~~~l 433 (473)
||+|||.++.||++++| ||+.+|+++.|+.++|..|+..++......+ ...+..+.... +++++++..++
T Consensus 255 vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999 9999999999999999999999987654443 44555555533 68998887765
No 23
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.92 E-value=2.5e-24 Score=208.15 Aligned_cols=212 Identities=24% Similarity=0.338 Sum_probs=159.9
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc--
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-- 290 (473)
.++.+|++++|.++.+.++.+... ++..+..+...+...++|++|+||||||||+|++++|+.++.+++.++..++.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 445799999999999998876544 56677888999999999999999999999999999999999999988876542
Q ss_pred ----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
....+..+|.... .++++++||+|.+...+.. .. ..........++.+++.|+|.... ..+++++
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~--~~-----~~~~~~~~~~~~~ll~~l~g~~~~--~~~i~~a 159 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS--GV-----GGGNDEREQTLNQLLVEMDGFEKD--TAIVVMA 159 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------------CHHHHHHHHHHHHHHHTCCTT--CCEEEEE
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCc--cc-----cccchHHHHHHHHHHHHHhCCCCC--CCEEEEE
Confidence 1234666777654 5799999999988642211 00 011233456788999999987443 3478889
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC-CCCHHHHHHHHh
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT-QVTPAEVAEQLM 434 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~t~a~i~~~l~ 434 (473)
+||+|+.+|++++|||||+.+|+++.|+.++|.+|++.+..........++..+.... +++++|+..+|-
T Consensus 160 ~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 160 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp EESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred ccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999887543222122233444433 688899877763
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.92 E-value=3.2e-24 Score=218.22 Aligned_cols=208 Identities=23% Similarity=0.362 Sum_probs=164.3
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC--
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS-- 291 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~-- 291 (473)
++.+|++|+|.++.++.|.+.+..++..++.|...+ .+++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 467899999999999999999998888888877665 45789999999999999999999999999999999988743
Q ss_pred ----chHHHHHHHHh--ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEe
Q 012016 292 ----NSDLRTLLVAT--ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFT 365 (473)
Q Consensus 292 ----~~~l~~l~~~~--~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 365 (473)
...++.++..+ .+++||||||||.+...+. .+........++.||..+++.....+..++||+|
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~----------~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~a 227 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRG----------DGEHESSRRIKTEFLVQLDGATTSSEDRILVVGA 227 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------------CHHHHHHHHHHHHHHC----CCCCEEEEEE
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCC----------CCcchHHHHHHHHHHHHHhcccccCCCCEEEEEe
Confidence 23455566544 3679999999999975221 1123345678899999999876555567999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCC-HHHHHHHHhcC-CCCHHHHHHHHh
Q 012016 366 TNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHIL-FEEIEELISTT-QVTPAEVAEQLM 434 (473)
Q Consensus 366 TN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~t~a~i~~~l~ 434 (473)
||.++.+|++++| ||+..++++.|+.++|..++..++......+ ...+..++..+ +++++++..+|-
T Consensus 228 tn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 228 TNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp ESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999 9999999999999999999999886543333 45566666544 689999987763
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.91 E-value=6.7e-24 Score=209.54 Aligned_cols=208 Identities=22% Similarity=0.315 Sum_probs=160.8
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC-
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS- 291 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~- 291 (473)
.++.+|++++|.++.++.+.+.+..+...++.|...+ .+++++||+||||||||++++++|++++.+++.++++.+..
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 3568999999999999999999988888888777665 44689999999999999999999999999999999887632
Q ss_pred -----chHHHHHHHHh--ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccC-CCCceEEE
Q 012016 292 -----NSDLRTLLVAT--ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSS-CGDERIIV 363 (473)
Q Consensus 292 -----~~~l~~l~~~~--~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~-~~~~~iiI 363 (473)
...++.++..+ .+++||||||+|.+...+.. ..........+.||..+++.... .+..++||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~----------~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi 163 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS----------SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVL 163 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC---------------CCSHHHHHHHHHHHHHCC------CEEEE
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcccccc----------CcchHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 23345555544 36899999999999762211 11223456778899999987543 23468999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCC-HHHHHHHHhc-CCCCHHHHHHHH
Q 012016 364 FTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHIL-FEEIEELIST-TQVTPAEVAEQL 433 (473)
Q Consensus 364 ~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~-~~~t~a~i~~~l 433 (473)
+|||.++.+|++++| ||+..++++.|+.++|..|+..++......+ ...+..+... .+++++++..++
T Consensus 164 ~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 164 AATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999 9999999999999999999999887554333 3445555543 368888887765
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=3.1e-23 Score=203.37 Aligned_cols=211 Identities=24% Similarity=0.339 Sum_probs=158.7
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc--
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-- 290 (473)
.++.+|++++|.++.++++.+... ++..+..+..++...++|++|+||||||||+|++++|+.++.+++.+++.++.
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 466899999999999998876544 56677888899999999999999999999999999999999999988876542
Q ss_pred ----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
....+..+|.... .++++++||+|.+...+.. .. ..........+..+++.++|.... ..+++++
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~--~~-----~~~~~~~~~~~~~ll~~lsgg~~~--~~~i~~a 183 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS--GV-----GGGNDEREQTLNQLLVEMDGFEKD--TAIVVMA 183 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------------CHHHHHHHHHHHHHHTTCCTT--CCEEEEE
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhccccc--cc-----CCcchHHHHHHHHHHHHHhCCCCC--CCEEEEE
Confidence 1234566676653 5799999999988642111 00 011223456788899999886432 3478889
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhc-CCCCHHHHHHHH
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIST-TQVTPAEVAEQL 433 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~t~a~i~~~l 433 (473)
+||+|+.|||+++|||||+.+|+++.|+.++|.+|++.++.........++..+... .+++++|+..+|
T Consensus 184 ~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~ 253 (278)
T 1iy2_A 184 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLL 253 (278)
T ss_dssp EESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred ecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999988754322111223334333 358888887665
No 27
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.91 E-value=1.3e-24 Score=215.22 Aligned_cols=172 Identities=16% Similarity=0.147 Sum_probs=123.5
Q ss_pred HhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC------chHHHHHHHHhc------cCceEEEec
Q 012016 245 YRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS------NSDLRTLLVATA------NRSILVVED 312 (473)
Q Consensus 245 y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~------~~~l~~l~~~~~------~~sIL~iDd 312 (473)
....+..+++|+|||||||||||++|+++|++++.+++.++++++.+ ...++.+|..+. .++||||||
T Consensus 28 l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDE 107 (293)
T 3t15_A 28 LKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFIND 107 (293)
T ss_dssp SCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEEC
T ss_pred HhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 33456778899999999999999999999999999999999888632 345667776652 689999999
Q ss_pred cccccccccCCccccCCCCCCCccchhHHHHHHHHHhccccc---------CCCCceEEEEecCCCCCCCccccCCCcee
Q 012016 313 IDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWS---------SCGDERIIVFTTNHKEKLDPALLRPGRMD 383 (473)
Q Consensus 313 iD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~---------~~~~~~iiI~tTN~~~~ld~aLlrpgRfd 383 (473)
||.+... +. ... ......+...+.|++.||+... ....+++||+|||+++.+|++++||||||
T Consensus 108 iD~~~~~--~~-~~~-----~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d 179 (293)
T 3t15_A 108 LDAGAGR--MG-GTT-----QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 179 (293)
T ss_dssp CC----------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEE
T ss_pred hhhhcCC--CC-CCc-----cccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCc
Confidence 9998751 11 000 1112345677889999985431 12346899999999999999999999999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcCCCCHHHH
Q 012016 384 VHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTTQVTPAEV 429 (473)
Q Consensus 384 ~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~t~a~i 429 (473)
.+|++ |+.++|..|++.++... ....+.++.+... ++++++
T Consensus 180 ~~i~~--P~~~~r~~Il~~~~~~~-~~~~~~l~~~~~~--~~~~~l 220 (293)
T 3t15_A 180 KFYWA--PTREDRIGVCTGIFRTD-NVPAEDVVKIVDN--FPGQSI 220 (293)
T ss_dssp EEEEC--CCHHHHHHHHHHHHGGG-CCCHHHHHHHHHH--SCSCCH
T ss_pred eeEeC--cCHHHHHHHHHHhccCC-CCCHHHHHHHhCC--CCcccH
Confidence 99974 69999999999888644 3446677777665 555444
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.90 E-value=3.5e-26 Score=255.13 Aligned_cols=213 Identities=22% Similarity=0.306 Sum_probs=165.4
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc--
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-- 290 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-- 290 (473)
.+..+|++++|.+++|+.+.+.+..++..++.|...|..++.++||+||||||||+|++++|++++.+++.++++++.
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 345789999999999999998888777788888888999999999999999999999999999999999999988863
Q ss_pred ----CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 291 ----SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
....++.+|..+. .++||||||||.++..+..... .........++.||+.||++... .+++||+
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~-------~~~~~~~~v~~~LL~~ld~~~~~--~~v~vI~ 621 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG-------DGGGAADRVINQILTEMDGMSTK--KNVFIIG 621 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCS-------HHHHHHHHHHHHHHTTCC--------CCBCCC
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCC-------CcchhHHHHHHHHHHHHhccccc--CCeEEEE
Confidence 3456788887764 5799999999999753211100 11234578899999999998554 5699999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHh-cCCCCHHHHHHHHh
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIS-TTQVTPAEVAEQLM 434 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~-~~~~t~a~i~~~l~ 434 (473)
|||+++.||||++|||||+.+|++++|+.++|..|++.++.........++..+.. ..++|+++|..+|.
T Consensus 622 tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~ 692 (806)
T 1ypw_A 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp CCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHH
T ss_pred ecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999886532111112222332 23689999988763
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.87 E-value=6.7e-22 Score=220.62 Aligned_cols=209 Identities=22% Similarity=0.316 Sum_probs=169.2
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC-
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS- 291 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~- 291 (473)
.++.+|++|+|.+++++.|.+.+..++.+++.|..++..+++++||+||||||||+|++++|+.++.+++.+++.++.+
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999999877632
Q ss_pred -----chHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEE
Q 012016 292 -----NSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVF 364 (473)
Q Consensus 292 -----~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 364 (473)
...+..+|.... .++++||||||.+...+.. .........+..|+..+++.... ..+++|+
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~----------~~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~ 345 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----------THGEVERRIVSQLLTLMDGLKQR--AHVIVMA 345 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC----------CCSHHHHHHHHHHHHHHHSSCTT--SCCEEEE
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc----------ccchHHHHHHHHHHHHhhhhccc--ccEEEec
Confidence 245666776653 5799999999998752211 11233467888999999998654 4589999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhc-CCCCHHHHHHHH
Q 012016 365 TTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELIST-TQVTPAEVAEQL 433 (473)
Q Consensus 365 tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~t~a~i~~~l 433 (473)
|||+++.+|+++.|+|||+..+.++.|+.++|..++..+..........++..+... .+++++++...+
T Consensus 346 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~ 415 (806)
T 1ypw_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp ECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHH
T ss_pred ccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHH
Confidence 999999999999999999999999999999999999988764322222233444433 368888887664
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.82 E-value=5.7e-19 Score=177.31 Aligned_cols=195 Identities=14% Similarity=0.169 Sum_probs=146.3
Q ss_pred cceeccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 206 AWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 206 ~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.|.. ...|.+|++++|.+..++.+...+...... .....++||+||||||||++|+++|+.++.+++.++
T Consensus 18 ~~~~--~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 18 TYET--SLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp -------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred hhhh--ccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 4543 345679999999999999887776654321 224568999999999999999999999999999999
Q ss_pred cccccCchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccccc-----------
Q 012016 286 LTELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWS----------- 354 (473)
Q Consensus 286 ~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~----------- 354 (473)
+..+.....+...+.....+++|||||||.+. ......|+..++...-
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~---------------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~ 146 (338)
T 3pfi_A 88 APMIEKSGDLAAILTNLSEGDILFIDEIHRLS---------------------PAIEEVLYPAMEDYRLDIIIGSGPAAQ 146 (338)
T ss_dssp GGGCCSHHHHHHHHHTCCTTCEEEEETGGGCC---------------------HHHHHHHHHHHHTSCC---------CC
T ss_pred chhccchhHHHHHHHhccCCCEEEEechhhcC---------------------HHHHHHHHHHHHhccchhhcccCcccc
Confidence 98887777888888888899999999999873 3345666766664320
Q ss_pred ---CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCC-HHHHHHHHhcCCCCHHHHH
Q 012016 355 ---SCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHIL-FEEIEELISTTQVTPAEVA 430 (473)
Q Consensus 355 ---~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~~~t~a~i~ 430 (473)
.....+++|++||....++++|++ ||+.+++|+.|+.+++..++..++......+ .+.+..++......+.++.
T Consensus 147 ~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 147 TIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp CCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHH
T ss_pred ceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 000137899999999999999999 9999999999999999999998876543332 3344445554455665554
Q ss_pred HHH
Q 012016 431 EQL 433 (473)
Q Consensus 431 ~~l 433 (473)
+.+
T Consensus 225 ~~l 227 (338)
T 3pfi_A 225 RLL 227 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.80 E-value=5.3e-20 Score=193.06 Aligned_cols=172 Identities=15% Similarity=0.086 Sum_probs=118.5
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC--CceEEcccccccC
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLELTELRS 291 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~--~~~~~l~~~~~~~ 291 (473)
+...|++++|.++.++.+...+..+. .|..+++++|||||||||||++|+++|++++ .+++.++++.+.+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~~--------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELIK--------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHHH--------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 33568999999999998876554332 3566778999999999999999999999999 9999999888742
Q ss_pred -----chHHHHHHHHh-----ccCceEEEeccccccccccCCccccCCCCC---------CCccchhHHHHHHHHHhccc
Q 012016 292 -----NSDLRTLLVAT-----ANRSILVVEDIDCTIDLQDRLPADIAGEGE---------GPIQQNKVTLSGFLNFIDGL 352 (473)
Q Consensus 292 -----~~~l~~l~~~~-----~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~---------~~~~~~~~~ls~LL~~ldg~ 352 (473)
...+++.|..+ ..++||||||+|.++..+............ .+........+.++..++..
T Consensus 104 ~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 104 TEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred HhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 23477888776 378999999999998733221100000000 00011123344566666532
Q ss_pred ccCCCCceEEEEecCCCCCCCccccCCCceee--EEEeCCCCH
Q 012016 353 WSSCGDERIIVFTTNHKEKLDPALLRPGRMDV--HVHMSYCTP 393 (473)
Q Consensus 353 ~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~--~I~~~~p~~ 393 (473)
....++.++|++|||+++.+|++++||||||. .+.+|.|+.
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 22334445566899999999999999999998 567777754
No 32
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.79 E-value=3.2e-18 Score=170.42 Aligned_cols=190 Identities=19% Similarity=0.209 Sum_probs=143.9
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCc
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSN 292 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~ 292 (473)
..|.+|++++|.+..++.+...+...... ...+.++||+||||||||++|+++++.++.+++.+++..+...
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 77 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence 35679999999998888887766544321 1235689999999999999999999999999999999888777
Q ss_pred hHHHHHHHH-hccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccccc-----C---------CC
Q 012016 293 SDLRTLLVA-TANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWS-----S---------CG 357 (473)
Q Consensus 293 ~~l~~l~~~-~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~-----~---------~~ 357 (473)
..+...+.. ...+++|||||+|.+.. .....|+..++...- . ..
T Consensus 78 ~~l~~~l~~~~~~~~~l~lDEi~~l~~---------------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 78 GDLAAILANSLEEGDILFIDEIHRLSR---------------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp HHHHHHHTTTCCTTCEEEETTTTSCCH---------------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred HHHHHHHHHhccCCCEEEEECCccccc---------------------chHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 777777766 56889999999998732 234455555553210 0 01
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCC-HHHHHHHHhcCCCCHHHHHHHH
Q 012016 358 DERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHIL-FEEIEELISTTQVTPAEVAEQL 433 (473)
Q Consensus 358 ~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~~~t~a~i~~~l 433 (473)
..+++|++||.+..++++|++ ||+.++.++.|+.+++..++..++......+ .+.++.++....-.|.++.+.+
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l 211 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLF 211 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 247899999999999999998 9998999999999999999998876543333 3445555555556777766654
No 33
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.77 E-value=1.5e-19 Score=187.27 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=72.5
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcC-CCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC-------
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS------- 291 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~-~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~------- 291 (473)
.|+|+++.|+.+...+....++...+...+. .+++++||+||||||||++++++|+.++.+++.++++.+..
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 6899999999998888776665554444433 35789999999999999999999999999999999866522
Q ss_pred -chHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEe-cCCC
Q 012016 292 -NSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFT-TNHK 369 (473)
Q Consensus 292 -~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t-TN~~ 369 (473)
...++.++..+. .++++||+|.+... .......++++.||+.|||+.+.. .+ +++ ||++
T Consensus 96 ~e~~lr~lf~~a~--~~~~~De~d~~~~~-------------~~~~~e~rvl~~LL~~~dg~~~~~---~v-~a~~TN~~ 156 (444)
T 1g41_A 96 VDSIIRDLTDSAM--KLVRQQEIAKNRAR-------------AEDVAEERILDALLPPAKNQWGEV---EN-HDSHSSTR 156 (444)
T ss_dssp THHHHHHHHHHHH--HHHHHHHHHSCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHH--hcchhhhhhhhhcc-------------chhhHHHHHHHHHHHHhhcccccc---cc-ccccccCH
Confidence 345566665442 24458888866421 112345789999999999996542 23 444 9999
Q ss_pred CCCCccccCCCceeeEEEeCCCCHH-HHHHHH
Q 012016 370 EKLDPALLRPGRMDVHVHMSYCTPS-GFKLLA 400 (473)
Q Consensus 370 ~~ld~aLlrpgRfd~~I~~~~p~~~-~r~~l~ 400 (473)
+.|||||+||||||++|+++.|+.. .+.+|+
T Consensus 157 ~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 157 QAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999999999999987 565554
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.77 E-value=2.7e-18 Score=169.92 Aligned_cols=174 Identities=14% Similarity=0.229 Sum_probs=131.5
Q ss_pred cc-ccccchHHHHHHHHHHHHHHhchhHHhhhcCCC---CceeEEeCCCCCCHHHHHHHHHHhc-------CCceEEccc
Q 012016 218 FE-TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAW---KRGYLLYGPPGTGKSSLIAAMANYL-------NFDVYDLEL 286 (473)
Q Consensus 218 f~-~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~---~rg~LL~GPpGtGKT~la~alA~~l-------~~~~~~l~~ 286 (473)
++ +++|.+++++.|.+.+..+.. +..+.+.|... ..++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 44 699999999999888776543 45566666544 3469999999999999999999998 348889888
Q ss_pred ccccC------chHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCce
Q 012016 287 TELRS------NSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDER 360 (473)
Q Consensus 287 ~~~~~------~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ 360 (473)
+.+.. ...+..+|... .++||||||+|.+...+. ........+..|++.|+.. ..++
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~------------~~~~~~~~~~~Ll~~l~~~----~~~~ 170 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDN------------ERDYGQEAIEILLQVMENN----RDDL 170 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCCCC---------------CCTHHHHHHHHHHHHHC----TTTC
T ss_pred HHhhhhcccccHHHHHHHHHhc-CCCEEEEEChhhhccCCC------------cccccHHHHHHHHHHHhcC----CCCE
Confidence 87632 23455555544 678999999999864111 1123467788899988853 2457
Q ss_pred EEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCC
Q 012016 361 IIVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHIL 411 (473)
Q Consensus 361 iiI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l 411 (473)
++|+|||.++ .++|+|++ ||+.+|+|+.|+.+++..|+..++......+
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~ 224 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQM 224 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCC
Confidence 8889998653 35799999 9999999999999999999999987554333
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.74 E-value=3.3e-17 Score=161.65 Aligned_cols=173 Identities=17% Similarity=0.271 Sum_probs=122.4
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhh-cCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC-------
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS------- 291 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~-g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~------- 291 (473)
.++|.++.++.+...+...+......... +...+.++||+||||||||++++++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 58899999999888776543322111111 1134578999999999999999999999999999999887642
Q ss_pred -chHHHHHHHHh-------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccccc------CCC
Q 012016 292 -NSDLRTLLVAT-------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWS------SCG 357 (473)
Q Consensus 292 -~~~l~~l~~~~-------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~------~~~ 357 (473)
...+..++... ..++||||||+|.+...... .+.........+.|+..+++... ...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~---------~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~ 166 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY---------SGADVSREGVQRDLLPLVEGSTVSTKHGMVKT 166 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC---------CSSHHHHHHHHHHHHHHHHCCEEEETTEEEEC
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc---------cccchhHHHHHHHHHHHhcCCeEecccccccC
Confidence 23355555432 35799999999998642110 01122223346778888886411 012
Q ss_pred CceEEEEe----cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012016 358 DERIIVFT----TNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANY 403 (473)
Q Consensus 358 ~~~iiI~t----TN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~ 403 (473)
..+++|++ ++.+..++|+|++ ||+.+|+|+.|+.+++..|+...
T Consensus 167 ~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 167 DHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp TTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred CcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhh
Confidence 35788887 5678899999998 99999999999999999999853
No 36
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.73 E-value=3.3e-17 Score=163.57 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=121.0
Q ss_pred cceeccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 206 AWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 206 ~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.|.. ...|.+|++++|.++.++.+.+.+. . ...+..+|++||||||||++++++|+.++.+++.++
T Consensus 15 ~~~~--k~rP~~~~~ivg~~~~~~~l~~~l~----~--------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 15 ILEQ--KYRPSTIDECILPAFDKETFKSITS----K--------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp SHHH--HSCCCSTTTSCCCHHHHHHHHHHHH----T--------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred hHHH--hhCCCCHHHHhCcHHHHHHHHHHHH----c--------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 4543 4567899999999988777665443 1 233567899999999999999999999999999999
Q ss_pred cccccCchHHHHHHHHhc-------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCC
Q 012016 286 LTELRSNSDLRTLLVATA-------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGD 358 (473)
Q Consensus 286 ~~~~~~~~~l~~l~~~~~-------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 358 (473)
++... ...++..+.... .+.||||||+|.+.. ......|+..++... .
T Consensus 81 ~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------------------~~~~~~L~~~le~~~----~ 135 (324)
T 3u61_B 81 GSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------------------AESQRHLRSFMEAYS----S 135 (324)
T ss_dssp TTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------------------HHHHHHHHHHHHHHG----G
T ss_pred ccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------------------HHHHHHHHHHHHhCC----C
Confidence 87754 455555444321 568999999998841 234556777776542 3
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 359 ERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 359 ~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
.+.+|+|||.+..++++|++ ||. .++|+.|+.+++..++..++.
T Consensus 136 ~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~ 179 (324)
T 3u61_B 136 NCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIR 179 (324)
T ss_dssp GCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999 985 799999999998887776543
No 37
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.71 E-value=2.7e-16 Score=146.24 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=115.1
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEccc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLEL 286 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~~ 286 (473)
...|.+|++++|.++.++.+.+.+. .. ...+++|+||||||||++++++++.+ ...++.+++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~----~~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVE----RK---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHH----TT---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHh----CC---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 3467899999998887777655443 21 12359999999999999999999986 456777777
Q ss_pred ccccCchHHHHHHHHh--------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCC
Q 012016 287 TELRSNSDLRTLLVAT--------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGD 358 (473)
Q Consensus 287 ~~~~~~~~l~~l~~~~--------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 358 (473)
........+...+... ..+.+|+|||+|.+.. .....|+..++.. ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------------~~~~~l~~~l~~~----~~ 131 (226)
T 2chg_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------------DAQAALRRTMEMY----SK 131 (226)
T ss_dssp TCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---------------------HHHHHHHHHHHHT----TT
T ss_pred ccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---------------------HHHHHHHHHHHhc----CC
Confidence 6655444444444332 4578999999998732 2345566666543 24
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 359 ERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 359 ~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+..+|+|||.++.+++++.+ |+. .++++.|+.++...++..++...
T Consensus 132 ~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~ 177 (226)
T 2chg_A 132 SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKE 177 (226)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHc
Confidence 57889999999999999999 887 89999999999999998876543
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.71 E-value=1.5e-16 Score=155.05 Aligned_cols=167 Identities=19% Similarity=0.249 Sum_probs=114.3
Q ss_pred cccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc-C------
Q 012016 219 ETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR-S------ 291 (473)
Q Consensus 219 ~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~-~------ 291 (473)
+.+++.....+.++.....+. ......+..+++++||+||||||||++|+++|+.++.+++.+++++.. .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 345666666566655422222 222333456678999999999999999999999999999998876521 1
Q ss_pred chHHHHHHHHh--ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCC
Q 012016 292 NSDLRTLLVAT--ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHK 369 (473)
Q Consensus 292 ~~~l~~l~~~~--~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 369 (473)
...++.++..+ ..+++|||||||.++..+. .........+..|+..+++... .+..++||+|||.+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~-----------~~~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~ 177 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP-----------IGPRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRK 177 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT-----------TTTBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCC-----------CChhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCCh
Confidence 13456666654 3579999999999864211 1122345566777777776532 34467899999999
Q ss_pred CCCCc-cccCCCceeeEEEeCCCCH-HHHHHHHHH
Q 012016 370 EKLDP-ALLRPGRMDVHVHMSYCTP-SGFKLLAAN 402 (473)
Q Consensus 370 ~~ld~-aLlrpgRfd~~I~~~~p~~-~~r~~l~~~ 402 (473)
+.+++ .+.+ ||+..|++|.++. ++...++..
T Consensus 178 ~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 178 DVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp HHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred hhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 98988 5555 9999999987766 555555554
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.71 E-value=2.2e-16 Score=160.11 Aligned_cols=182 Identities=16% Similarity=0.158 Sum_probs=122.8
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC--ceEEccccccc---
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELTELR--- 290 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~--~~~~l~~~~~~--- 290 (473)
.+|++++|.+..++.+..... .+. .|..+++++||+||||||||++++++|+.++. +++.+++..+.
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~-~~~-------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLE-MIR-------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHH-HHH-------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred cchhhccChHHHHHHHHHHHH-HHH-------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 449999999988887644332 222 24455689999999999999999999999974 66666644310
Q ss_pred -----------------------------------------------C-----chHHHHHHHHhc-----------cCce
Q 012016 291 -----------------------------------------------S-----NSDLRTLLVATA-----------NRSI 307 (473)
Q Consensus 291 -----------------------------------------------~-----~~~l~~l~~~~~-----------~~sI 307 (473)
. ...++..+.... .++|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 0 233444443321 1579
Q ss_pred EEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEec-----------CCCCCCCccc
Q 012016 308 LVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTT-----------NHKEKLDPAL 376 (473)
Q Consensus 308 L~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT-----------N~~~~ld~aL 376 (473)
|||||+|.+. ...++.|+..++.. ...+++++|. |.+..++++|
T Consensus 193 l~IDEi~~l~---------------------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l 247 (368)
T 3uk6_A 193 LFIDEVHMLD---------------------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDL 247 (368)
T ss_dssp EEEESGGGSB---------------------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHH
T ss_pred EEEhhccccC---------------------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHH
Confidence 9999999873 34566777777643 2234444443 3578899999
Q ss_pred cCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCCH-HHHHHHHhcCC-CCHHHHHHHH
Q 012016 377 LRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILF-EEIEELISTTQ-VTPAEVAEQL 433 (473)
Q Consensus 377 lrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~~-~t~a~i~~~l 433 (473)
++ ||.. |+|+.|+.+++..++..++......+. +.++.++.... .++.++...|
T Consensus 248 ~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 248 LD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred Hh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99 9976 899999999999999988765444333 33444444433 5666655544
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.68 E-value=2.1e-17 Score=168.07 Aligned_cols=173 Identities=19% Similarity=0.240 Sum_probs=118.2
Q ss_pred cccchHHHHHHHHHHHHHHhchhHHhh-hcC-CCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC-------
Q 012016 221 LAMEQEQKTKIMQDLERFVKRKDYYRR-VGK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS------- 291 (473)
Q Consensus 221 l~~~~~~k~~l~~~l~~fl~~~~~y~~-~g~-~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~------- 291 (473)
|+|++..++.+...+.....+...... .+. .++.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 689999999988877655433221100 111 24678999999999999999999999999999999987642
Q ss_pred -chHHHHHHHHh------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccC---------
Q 012016 292 -NSDLRTLLVAT------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSS--------- 355 (473)
Q Consensus 292 -~~~l~~l~~~~------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~--------- 355 (473)
...+..++... ..++||||||||.+...+.. .. .+.+.......+.||..|||....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~--~~-----~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~ 169 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDN--PS-----ITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKH 169 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSC--C--------CHHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccc--cc-----cccccchHHHHHHHHHHhcCceeeccCcccccc
Confidence 23445555543 36789999999998652211 10 011222344889999999953210
Q ss_pred --------CCCceEEEEecCCC----------CC-----------------------------------CCccccCCCce
Q 012016 356 --------CGDERIIVFTTNHK----------EK-----------------------------------LDPALLRPGRM 382 (473)
Q Consensus 356 --------~~~~~iiI~tTN~~----------~~-----------------------------------ld~aLlrpgRf 382 (473)
...++++|+|+|.. .. +.|+|+. ||
T Consensus 170 ~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~ 247 (363)
T 3hws_A 170 PQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RL 247 (363)
T ss_dssp ----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TC
T ss_pred CCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--cc
Confidence 11234555555532 11 6788887 99
Q ss_pred eeEEEeCCCCHHHHHHHHHH
Q 012016 383 DVHVHMSYCTPSGFKLLAAN 402 (473)
Q Consensus 383 d~~I~~~~p~~~~r~~l~~~ 402 (473)
+..+.|+.|+.+.+..|+..
T Consensus 248 ~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 248 PVVATLNELSEEALIQILKE 267 (363)
T ss_dssp CEEEECCCCCHHHHHHHHHS
T ss_pred CeeeecCCCCHHHHHHHHHH
Confidence 99999999999999999886
No 41
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.68 E-value=1.6e-15 Score=142.55 Aligned_cols=156 Identities=19% Similarity=0.310 Sum_probs=113.3
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC------------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 279 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------ 279 (473)
...|..|++++|.+..++.+...+.. + ..++.++|+||||||||++++++++.++.
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 83 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 35668899999998887776655431 1 12457999999999999999999998743
Q ss_pred ------------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHH
Q 012016 280 ------------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVT 341 (473)
Q Consensus 280 ------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (473)
+++.++.........++.++.... .+.+|+|||+|.+. ...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~---------------------~~~ 142 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---------------------RHS 142 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC---------------------HHH
T ss_pred HHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc---------------------HHH
Confidence 223333222222344566665532 46899999999862 235
Q ss_pred HHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 342 LSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 342 ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
+..|+..++.. +...++|++||.+..+++++.+ |+ ..++++.++.++...++..++...
T Consensus 143 ~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~ 201 (250)
T 1njg_A 143 FNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEE 201 (250)
T ss_dssp HHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhc
Confidence 56677777643 3468899999999999999988 75 689999999999999999887543
No 42
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=7.1e-16 Score=164.09 Aligned_cols=196 Identities=18% Similarity=0.300 Sum_probs=126.6
Q ss_pred cceeccCCCCCCccccccchHHHHHHHHHHHHHHhch-hHHhhhcC---CCCceeEEeCCCCCCHHHHHHHHHHhcCCce
Q 012016 206 AWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRK-DYYRRVGK---AWKRGYLLYGPPGTGKSSLIAAMANYLNFDV 281 (473)
Q Consensus 206 ~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~-~~y~~~g~---~~~rg~LL~GPpGtGKT~la~alA~~l~~~~ 281 (473)
.|.. ...|.+|++++|.++.++.+.+.+..+.... ..+...|. ++++++||+||||||||++|+++|++++.++
T Consensus 28 lW~e--kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~ 105 (516)
T 1sxj_A 28 LWTV--KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105 (516)
T ss_dssp CHHH--HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred Cccc--ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 5644 4577899999999999999888877654322 22333333 3568999999999999999999999999999
Q ss_pred EEcccccccCchHHHHHHH-------------Hh-------ccCceEEEeccccccccccCCccccCCCCCCCccchhHH
Q 012016 282 YDLELTELRSNSDLRTLLV-------------AT-------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVT 341 (473)
Q Consensus 282 ~~l~~~~~~~~~~l~~l~~-------------~~-------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (473)
+.+++++......+...+. .. ..+.||||||+|.+.. ..+..
T Consensus 106 i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~------------------~~~~~ 167 (516)
T 1sxj_A 106 LEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG------------------GDRGG 167 (516)
T ss_dssp EEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT------------------TSTTH
T ss_pred EEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch------------------hhHHH
Confidence 9999988755433333222 11 3578999999999853 01223
Q ss_pred HHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCC-HHHHHHHHh
Q 012016 342 LSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHIL-FEEIEELIS 420 (473)
Q Consensus 342 ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~ 420 (473)
+..|++.++.. ...+|+|+++.....++ .+.| +...|.|+.|+.+++..++...+......+ .+.+..+++
T Consensus 168 l~~L~~~l~~~----~~~iIli~~~~~~~~l~-~l~~---r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~ 239 (516)
T 1sxj_A 168 VGQLAQFCRKT----STPLILICNERNLPKMR-PFDR---VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQ 239 (516)
T ss_dssp HHHHHHHHHHC----SSCEEEEESCTTSSTTG-GGTT---TSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHH
T ss_pred HHHHHHHHHhc----CCCEEEEEcCCCCccch-hhHh---ceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 55566666542 12233333333334443 3544 456899999999999988887665433222 233444444
Q ss_pred cCCCCHHHH
Q 012016 421 TTQVTPAEV 429 (473)
Q Consensus 421 ~~~~t~a~i 429 (473)
..+-...++
T Consensus 240 ~s~GdiR~~ 248 (516)
T 1sxj_A 240 TTRGDIRQV 248 (516)
T ss_dssp HTTTCHHHH
T ss_pred HcCCcHHHH
Confidence 333334333
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=8e-17 Score=146.37 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=104.9
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceEEc
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDL 284 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~l 284 (473)
|.+|++++|.++..+.+.+.+. . ..+++++|+||||||||++++++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~----~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQ----R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT----S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHh----c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 5689999998887777655432 1 225689999999999999999999997 7888888
Q ss_pred ccccccC--------chHHHHHHHHh---ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc
Q 012016 285 ELTELRS--------NSDLRTLLVAT---ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW 353 (473)
Q Consensus 285 ~~~~~~~--------~~~l~~l~~~~---~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 353 (473)
++..+.. ...+..++... ..+.||+|||+|.+...... ......... |...++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~----------~~~~~~~~~---l~~~~~~-- 149 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA----------DGAMDAGNM---LKPALAR-- 149 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------------CCCCHHH---HHHHHHT--
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc----------cchHHHHHH---HHHhhcc--
Confidence 8776531 12344454433 35779999999998642110 001111222 2333321
Q ss_pred cCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 012016 354 SSCGDERIIVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLA 400 (473)
Q Consensus 354 ~~~~~~~iiI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~ 400 (473)
.++.+|++||.++ .+++++++ ||+ .|+++.|+.+++.+|+
T Consensus 150 ----~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 ----GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ----TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred ----CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 3477888888876 78999999 998 6999999999988764
No 44
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.65 E-value=7.9e-16 Score=152.19 Aligned_cols=155 Identities=15% Similarity=0.198 Sum_probs=114.1
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEccc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLEL 286 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~~ 286 (473)
...|.+|++++|.++.++.+.+.+. . |. ..++|||||||||||++++++|+.+ +.+++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVE----R-------KN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTT----T-------TC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHh----C-------CC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 4567899999999888776654332 1 11 2249999999999999999999987 456777887
Q ss_pred ccccCchHHHHHHHHh--------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCC
Q 012016 287 TELRSNSDLRTLLVAT--------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGD 358 (473)
Q Consensus 287 ~~~~~~~~l~~l~~~~--------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 358 (473)
++..+...+++.+... ..+.||+|||+|.+. ....+.|+..++.. +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------------------~~~~~~L~~~le~~----~~ 131 (319)
T 2chq_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT---------------------ADAQAALRRTMEMY----SK 131 (319)
T ss_dssp TSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC---------------------HHHHHTTGGGTSSS----SS
T ss_pred ccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC---------------------HHHHHHHHHHHHhc----CC
Confidence 7654333333332221 347899999999873 22345566666542 34
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 359 ERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 359 ~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
..++|++||.+..+++++.+ |+. .++|+.|+.+++..++..++...
T Consensus 132 ~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~ 177 (319)
T 2chq_A 132 SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKE 177 (319)
T ss_dssp SEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHc
Confidence 68899999999999999998 886 89999999999999998877544
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.65 E-value=1.4e-15 Score=158.85 Aligned_cols=150 Identities=21% Similarity=0.314 Sum_probs=110.2
Q ss_pred CCCCCccccccchHHH---HHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc
Q 012016 213 DHPATFETLAMEQEQK---TKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL 289 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k---~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~ 289 (473)
-.|.+|++++|++..+ +.+...+ ... . ..++|||||||||||+++++||+.++.+++.+++...
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i----~~~-------~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~ 86 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAI----EAG-------H--LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS 86 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHH----HHT-------C--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHH----HcC-------C--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4578999999998777 4443332 221 1 2589999999999999999999999999999887654
Q ss_pred cCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEE
Q 012016 290 RSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIV 363 (473)
Q Consensus 290 ~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI 363 (473)
+...++.++..+. +++||||||||.+.. .....||..++. ..+++|
T Consensus 87 -~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~---------------------~~q~~LL~~le~------~~v~lI 138 (447)
T 3pvs_A 87 -GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK---------------------SQQDAFLPHIED------GTITFI 138 (447)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------------CCHHHHHT------TSCEEE
T ss_pred -CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH---------------------HHHHHHHHHHhc------CceEEE
Confidence 3455666665543 679999999998732 123446666664 235666
Q ss_pred Eec--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 364 FTT--NHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 364 ~tT--N~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
++| |....++++|++ |+. .+.|+.|+.+++..++.+++..
T Consensus 139 ~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 139 GATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp EEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred ecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 544 444689999999 886 6889999999999999998764
No 46
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.65 E-value=6.3e-16 Score=146.26 Aligned_cols=161 Identities=15% Similarity=0.197 Sum_probs=106.7
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC---CceEEccccc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELTE 288 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~---~~~~~l~~~~ 288 (473)
+.++.+|+++++.+ ..+.+++.+..+... +.+++++|+||||||||++++++++.+. .+++.+++..
T Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 21 LPDDETFTSYYPAA-GNDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CCTTCSTTTSCC---CCHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCCCChhhccCCC-CCHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 44557999998732 223444555555432 1357899999999999999999999874 7888888876
Q ss_pred ccCchHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCce-EEEEecC
Q 012016 289 LRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDER-IIVFTTN 367 (473)
Q Consensus 289 ~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~-iiI~tTN 367 (473)
+... +.+.+....++.+|+|||+|.+.. .......|+..++..... ... +|+.+++
T Consensus 91 ~~~~--~~~~~~~~~~~~vliiDe~~~~~~-------------------~~~~~~~l~~~l~~~~~~--~~~~ii~~~~~ 147 (242)
T 3bos_A 91 HASI--STALLEGLEQFDLICIDDVDAVAG-------------------HPLWEEAIFDLYNRVAEQ--KRGSLIVSASA 147 (242)
T ss_dssp GGGS--CGGGGTTGGGSSEEEEETGGGGTT-------------------CHHHHHHHHHHHHHHHHH--CSCEEEEEESS
T ss_pred HHHH--HHHHHHhccCCCEEEEeccccccC-------------------CHHHHHHHHHHHHHHHHc--CCCeEEEEcCC
Confidence 5321 222333446789999999998742 111233455554443322 123 4444444
Q ss_pred CCC---CCCccccCCCcee--eEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 368 HKE---KLDPALLRPGRMD--VHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 368 ~~~---~ld~aLlrpgRfd--~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
.+. .+++++.+ ||. ..++++.|+.+++..++..++...
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~ 190 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMR 190 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHT
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHc
Confidence 444 45688888 886 899999999999999999887543
No 47
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.63 E-value=2.6e-15 Score=148.41 Aligned_cols=161 Identities=17% Similarity=0.270 Sum_probs=115.3
Q ss_pred cccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCchHH
Q 012016 219 ETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNSDL 295 (473)
Q Consensus 219 ~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l 295 (473)
+.++|.+..++.+...+......-. . ...+...+||+||||||||++|+++|+.+ +.+++.++++.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---D-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---C-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---C-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 3577888888888777665432110 0 11223479999999999999999999998 567899988876443222
Q ss_pred HHHH---------------H---HhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCC
Q 012016 296 RTLL---------------V---ATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCG 357 (473)
Q Consensus 296 ~~l~---------------~---~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~ 357 (473)
..++ . ....++||||||+|.+. ....+.|+..|+...-..+
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~---------------------~~~~~~Ll~~le~~~~~~~ 151 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH---------------------PDVFNILLQMLDDGRLTDS 151 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC---------------------HHHHHHHHHHHHHSEEECT
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC---------------------HHHHHHHHHHHhcCEEEcC
Confidence 2221 1 11245899999999873 3456777777765321111
Q ss_pred -------CceEEEEecCC--------------------------CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHh
Q 012016 358 -------DERIIVFTTNH--------------------------KEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYL 404 (473)
Q Consensus 358 -------~~~iiI~tTN~--------------------------~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l 404 (473)
.+.++|+|||. ...++|+|+. ||+..+.+++|+.+++..|+..++
T Consensus 152 ~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 152 HGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp TSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHT
T ss_pred CCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHH
Confidence 25789999998 5578899998 999999999999999999999887
Q ss_pred Cc
Q 012016 405 GI 406 (473)
Q Consensus 405 ~~ 406 (473)
..
T Consensus 230 ~~ 231 (311)
T 4fcw_A 230 SY 231 (311)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.63 E-value=2.8e-15 Score=149.74 Aligned_cols=187 Identities=17% Similarity=0.241 Sum_probs=118.5
Q ss_pred CCCCCCccccc-cchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccc
Q 012016 212 LDHPATFETLA-MEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (473)
Q Consensus 212 ~~~p~~f~~l~-~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~ 287 (473)
+.+..+|++++ |... .. ....+......+ .....+++||||||||||++++++++.+ +.+++.+++.
T Consensus 4 l~~~~~f~~fv~g~~~-~~-a~~~~~~~~~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGN-RL-AYEVVKEALENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTT-HH-HHHHHHHHHHTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcH-HH-HHHHHHHHHhCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 44557899997 4332 22 223333333321 1234689999999999999999999999 8999999887
Q ss_pred cccCc-------hHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCce
Q 012016 288 ELRSN-------SDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDER 360 (473)
Q Consensus 288 ~~~~~-------~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ 360 (473)
.+... ..+........++.+|||||+|.+.. . ......++..++..... +.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~----------------~---~~~~~~l~~~l~~~~~~--~~~ 133 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG----------------K---ERTQIEFFHIFNTLYLL--EKQ 133 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT----------------C---HHHHHHHHHHHHHHHHT--TCE
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC----------------C---hHHHHHHHHHHHHHHHC--CCe
Confidence 65210 11112222234589999999998742 0 12233444444443322 236
Q ss_pred EEEEecCCCC---CCCccccCCCcee--eEEEeCCCCHHHHHHHHHHHhCccccCCHH-HHHHHHhcCCCCHHHHHHH
Q 012016 361 IIVFTTNHKE---KLDPALLRPGRMD--VHVHMSYCTPSGFKLLAANYLGIKEHILFE-EIEELISTTQVTPAEVAEQ 432 (473)
Q Consensus 361 iiI~tTN~~~---~ld~aLlrpgRfd--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~-~i~~l~~~~~~t~a~i~~~ 432 (473)
+|+++++.+. .++++|++ ||+ ..++++. +.+++..++..++......+.+ .++.++... ....++...
T Consensus 134 iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~ 207 (324)
T 1l8q_A 134 IILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGK 207 (324)
T ss_dssp EEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHH
T ss_pred EEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHH
Confidence 6667777765 68999998 886 7899999 9999999999988654443433 344444444 445554443
No 49
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=4.8e-15 Score=146.78 Aligned_cols=154 Identities=14% Similarity=0.210 Sum_probs=115.1
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEccc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLEL 286 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~~ 286 (473)
...|.+|++++|.++.++.+.+.+. . | ..+ ++||+||||||||++++++|+.+ +.+++.+++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAK----D-------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHH----S-------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHH----c-------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 3567899999999988877655432 1 1 123 39999999999999999999986 456788887
Q ss_pred ccccCchHHHHHHHHh--------c-cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCC
Q 012016 287 TELRSNSDLRTLLVAT--------A-NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCG 357 (473)
Q Consensus 287 ~~~~~~~~l~~l~~~~--------~-~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~ 357 (473)
++..+...+++++... . .+.||+|||+|.+.. .....|+..++.. +
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------------------~~~~~L~~~le~~----~ 135 (323)
T 1sxj_B 81 SDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------------------GAQQALRRTMELY----S 135 (323)
T ss_dssp TSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------------------HHHHTTHHHHHHT----T
T ss_pred ccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------------------HHHHHHHHHHhcc----C
Confidence 7654445565555432 1 378999999998732 2345566666542 2
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 358 DERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 358 ~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
...++|++||.+..+++++.+ |+. .++|+.|+.++...++...+..
T Consensus 136 ~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHH
Confidence 457888899999999999998 775 8999999999999999887653
No 50
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.62 E-value=1.3e-14 Score=146.94 Aligned_cols=156 Identities=19% Similarity=0.310 Sum_probs=115.6
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC------------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 279 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~------------ 279 (473)
...|.+|++++|.++.++.+...+. . | ..++.|||+||||||||++++++|+.++.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~----~-------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLS----L-------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHH----H-------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred hhCCCchhhccCcHHHHHHHHHHHH----h-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 3466889999999888877666543 1 1 23457999999999999999999998854
Q ss_pred ------------ceEEcccccccCchHHHHHHHHhc------cCceEEEeccccccccccCCccccCCCCCCCccchhHH
Q 012016 280 ------------DVYDLELTELRSNSDLRTLLVATA------NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVT 341 (473)
Q Consensus 280 ------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (473)
+++.++.........++.++.... .+.||+|||+|.+. ...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~---------------------~~~ 135 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---------------------RHS 135 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC---------------------HHH
T ss_pred HHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc---------------------HHH
Confidence 233344332223345666666543 46799999999872 235
Q ss_pred HHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 342 LSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 342 ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
.+.|+..++.. +..+++|++|+.+..+++++.+ |+ ..++|+.|+.++...++..++...
T Consensus 136 ~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~ 194 (373)
T 1jr3_A 136 FNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEE 194 (373)
T ss_dssp HHHHHHHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 66777777653 3468899999999999999998 77 689999999999999998877543
No 51
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.62 E-value=9.3e-16 Score=164.04 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=111.5
Q ss_pred ccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCc-----
Q 012016 218 FETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSN----- 292 (473)
Q Consensus 218 f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~----- 292 (473)
.++++|.+++++.+.+.+........ ..+..++|+||||||||+++++||+.++.++..+++..+...
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~-------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS-------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS-------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc-------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 34588888888887654432221111 135579999999999999999999999999999988765321
Q ss_pred ----------hHHHHHHHHhc-cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccC------
Q 012016 293 ----------SDLRTLLVATA-NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSS------ 355 (473)
Q Consensus 293 ----------~~l~~l~~~~~-~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~------ 355 (473)
..+...|..+. ...||||||||.+.... .....+.||..||.....
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~-----------------~~~~~~~LL~~ld~~~~~~~~~~~ 215 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDF-----------------RGDPSSAMLEVLDPEQNSSFSDHY 215 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC--------------------------CCGGGTCTTTTTBCCCSS
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhh-----------------ccCHHHHHHHHHhhhhcceeeccc
Confidence 12333444442 45699999999986411 112345677777643211
Q ss_pred -----CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHh
Q 012016 356 -----CGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYL 404 (473)
Q Consensus 356 -----~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l 404 (473)
.-.+++||+|||.++.+||+|++ ||+ .|+|+.|+.+++..|+.+++
T Consensus 216 ~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 216 IEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred CCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 00357999999999999999999 996 69999999999999999887
No 52
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=6.5e-15 Score=146.07 Aligned_cols=155 Identities=14% Similarity=0.196 Sum_probs=112.9
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC-----CceEEccc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FDVYDLEL 286 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~-----~~~~~l~~ 286 (473)
...|.+|++++|.++.++.+...+. . |. ..++||+||||||||++++++|+.+. .+++.+++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVK----T-------GS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHH----H-------TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHH----c-------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 3567899999999888877665443 1 11 23599999999999999999999873 34677776
Q ss_pred ccccCchHHHHHHHHh--------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCC
Q 012016 287 TELRSNSDLRTLLVAT--------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGD 358 (473)
Q Consensus 287 ~~~~~~~~l~~l~~~~--------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 358 (473)
++..+...++..+... ..+.||+|||+|.+. ....+.|+..++.. +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------------------~~~~~~L~~~le~~----~~ 139 (327)
T 1iqp_A 85 SDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT---------------------QDAQQALRRTMEMF----SS 139 (327)
T ss_dssp TCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC---------------------HHHHHHHHHHHHHT----TT
T ss_pred cccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC---------------------HHHHHHHHHHHHhc----CC
Confidence 6542222333322221 347899999999873 23456677777643 24
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 359 ERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 359 ~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
...+|++||.+..+++++.+ |+. .++|+.++.++...++...+...
T Consensus 140 ~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~ 185 (327)
T 1iqp_A 140 NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENE 185 (327)
T ss_dssp TEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhc
Confidence 57888899999999999998 886 79999999999999888776543
No 53
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=5.7e-15 Score=148.40 Aligned_cols=158 Identities=18% Similarity=0.234 Sum_probs=113.8
Q ss_pred cceeccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC------C
Q 012016 206 AWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN------F 279 (473)
Q Consensus 206 ~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~------~ 279 (473)
.|.. ...|.+|++++|.++.++.+...+ .. |. ..++||+||||||||++++++|+.++ .
T Consensus 26 ~~~~--k~~p~~~~~i~g~~~~~~~l~~~l----~~-------~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 90 (353)
T 1sxj_D 26 PWVE--KYRPKNLDEVTAQDHAVTVLKKTL----KS-------AN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKS 90 (353)
T ss_dssp CHHH--HTCCSSTTTCCSCCTTHHHHHHHT----TC-------TT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHH--hcCCCCHHHhhCCHHHHHHHHHHH----hc-------CC--CCEEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 4543 346789999999998877665433 22 11 23499999999999999999999874 4
Q ss_pred ceEEcccccccCchHHHHHHHHh------------------ccCceEEEeccccccccccCCccccCCCCCCCccchhHH
Q 012016 280 DVYDLELTELRSNSDLRTLLVAT------------------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVT 341 (473)
Q Consensus 280 ~~~~l~~~~~~~~~~l~~l~~~~------------------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (473)
.+..+++++......+++.+... ..+.||+|||+|.+. ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~---------------------~~~ 149 (353)
T 1sxj_D 91 RILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT---------------------ADA 149 (353)
T ss_dssp SEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC---------------------HHH
T ss_pred ceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC---------------------HHH
Confidence 57778877654333333322211 234699999999873 234
Q ss_pred HHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 342 LSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 342 ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
.+.|+..|+... ....+|++||++..+++++++ |+. .++|+.|+.++...++...+..
T Consensus 150 ~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~ 207 (353)
T 1sxj_D 150 QSALRRTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQ 207 (353)
T ss_dssp HHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 466777776532 346777889999999999998 886 8999999999998888877643
No 54
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.60 E-value=8.4e-15 Score=145.80 Aligned_cols=151 Identities=13% Similarity=0.199 Sum_probs=106.1
Q ss_pred cccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceEEccccccc
Q 012016 221 LAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLELTELR 290 (473)
Q Consensus 221 l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~l~~~~~~ 290 (473)
|.+.++..+.|...+...+.. ..+.++|||||||||||++++++++++ ++.++.++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 444445555555555544432 236789999999999999999999998 4577888876642
Q ss_pred C----------------------chHHHHHHHHh----ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHH
Q 012016 291 S----------------------NSDLRTLLVAT----ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSG 344 (473)
Q Consensus 291 ~----------------------~~~l~~l~~~~----~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~ 344 (473)
+ ...+.+.|... ..+.||+|||+|.+. .+..+-.
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--------------------~q~~L~~ 152 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--------------------SEKILQY 152 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--------------------CTHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--------------------cchHHHH
Confidence 2 23456666653 346899999999884 1345555
Q ss_pred HHHHhcccccCCCCceEEEEecCCCCC----CCccccCCCcee-eEEEeCCCCHHHHHHHHHHHhCc
Q 012016 345 FLNFIDGLWSSCGDERIIVFTTNHKEK----LDPALLRPGRMD-VHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 345 LL~~ldg~~~~~~~~~iiI~tTN~~~~----ld~aLlrpgRfd-~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
|++... .....++||+++|..+. |++++.+ ||. ..|+|+.++.++...|+.+.+..
T Consensus 153 l~~~~~----~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 153 FEKWIS----SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHHHH----CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHhccc----ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 655432 12245889999998764 4556666 886 68999999999999999988754
No 55
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.60 E-value=3.4e-15 Score=149.41 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=107.4
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHH
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLR 296 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~ 296 (473)
.+++++|.++.++.+...+.. ++++||+||||||||++++++|+.++.+++.+++..-.....+.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 457888888887776554431 25899999999999999999999999999888874221111111
Q ss_pred HH---------HHHhcc---CceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc-------ccCCC
Q 012016 297 TL---------LVATAN---RSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL-------WSSCG 357 (473)
Q Consensus 297 ~l---------~~~~~~---~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-------~~~~~ 357 (473)
.. +..... .+||||||+|.+. ....+.|+..|+.. ....+
T Consensus 90 g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~---------------------~~~~~~Ll~~l~~~~~~~~g~~~~~~ 148 (331)
T 2r44_A 90 GTMIYNQHKGNFEVKKGPVFSNFILADEVNRSP---------------------AKVQSALLECMQEKQVTIGDTTYPLD 148 (331)
T ss_dssp EEEEEETTTTEEEEEECTTCSSEEEEETGGGSC---------------------HHHHHHHHHHHHHSEEEETTEEEECC
T ss_pred CceeecCCCCceEeccCcccccEEEEEccccCC---------------------HHHHHHHHHHHhcCceeeCCEEEECC
Confidence 00 000011 3799999999762 34556666666532 11123
Q ss_pred CceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 358 DERIIVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 358 ~~~iiI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
...++|+|+|..+ .++++|++ ||+.++++++|+.+++..|+...+..
T Consensus 149 ~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 149 NPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 3577888888553 38999999 99999999999999999999988764
No 56
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.59 E-value=6.5e-14 Score=140.75 Aligned_cols=191 Identities=17% Similarity=0.204 Sum_probs=128.0
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccC
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRS 291 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~ 291 (473)
.-.|.+|++++|.+.+++.+...+..-. ..|. ++..++|+||||||||+|++++|+.++.++...+......
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~~-~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAK-------MRGE-VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHTC-CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHH-------hcCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 3456799999998766665543332211 1122 2457999999999999999999999998887666555545
Q ss_pred chHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc------cCC--------C
Q 012016 292 NSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW------SSC--------G 357 (473)
Q Consensus 292 ~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~------~~~--------~ 357 (473)
...+..++.....+.|++|||++.+.. .....|+..++... ... -
T Consensus 90 ~~~l~~~~~~~~~~~v~~iDE~~~l~~---------------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 90 QGDMAAILTSLERGDVLFIDEIHRLNK---------------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp HHHHHHHHHHCCTTCEEEEETGGGCCH---------------------HHHHHHHHHHHTSCCCC---------------
T ss_pred HHHHHHHHHHccCCCEEEEcchhhcCH---------------------HHHHHHHHHHHhcccceeeccCcccccccccC
Confidence 556666666556788999999998742 11222333332110 000 0
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCccccCC-HHHHHHHHhcCCCCHHHHHHHH
Q 012016 358 DERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIKEHIL-FEEIEELISTTQVTPAEVAEQL 433 (473)
Q Consensus 358 ~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~~~t~a~i~~~l 433 (473)
..+.++++|+.+..|++++++ ||...+.|++++.+++..++++......... .+.+..++....-+|..+...|
T Consensus 149 ~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 149 QPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred CCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 235677899999999999999 9998999999999999999988765332222 3445555555556666554443
No 57
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.59 E-value=2.7e-15 Score=152.13 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=113.2
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---------CCceEEccc
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLEL 286 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---------~~~~~~l~~ 286 (473)
..+++++|.++..+.+...+...+. ...+++++|+||||||||++++++++.+ +.+++.+++
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3458899988887777665443221 1235689999999999999999999998 888888887
Q ss_pred ccccCc----------------------hH-HHHHHHHh---ccCceEEEeccccccccccCCccccCCCCCCCccchhH
Q 012016 287 TELRSN----------------------SD-LRTLLVAT---ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKV 340 (473)
Q Consensus 287 ~~~~~~----------------------~~-l~~l~~~~---~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 340 (473)
....+. .. +..++... ..+.||||||+|.+... .....
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~----------------~~~~~ 150 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKR----------------PGGQD 150 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHS----------------TTHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhccc----------------CCCCh
Confidence 654221 12 22222222 23679999999998530 01345
Q ss_pred HHHHHHHHhcccccCCCCceEEEEecCCC---CCCCccccCCCceee-EEEeCCCCHHHHHHHHHHHhC
Q 012016 341 TLSGFLNFIDGLWSSCGDERIIVFTTNHK---EKLDPALLRPGRMDV-HVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 341 ~ls~LL~~ldg~~~~~~~~~iiI~tTN~~---~~ld~aLlrpgRfd~-~I~~~~p~~~~r~~l~~~~l~ 405 (473)
.+..+++.++.... +..+++|++||.+ +.+++++.+ ||.. .|+|+.++.++...++...+.
T Consensus 151 ~l~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 151 LLYRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp HHHHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred HHHhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 66666666554310 2458899999987 788999998 8875 899999999999999998765
No 58
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.58 E-value=1.9e-15 Score=137.05 Aligned_cols=144 Identities=17% Similarity=0.268 Sum_probs=99.1
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceEEc
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDL 284 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~l 284 (473)
|.+|++++|.++..+.+.+.+. . ..++++||+||||||||++++++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~----~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILS----R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT----S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHh----C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 5689999998877666655432 1 235689999999999999999999997 7888888
Q ss_pred ccccccC--------chHHHHHHHHh---ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc
Q 012016 285 ELTELRS--------NSDLRTLLVAT---ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW 353 (473)
Q Consensus 285 ~~~~~~~--------~~~l~~l~~~~---~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 353 (473)
++..+.. ...+..++... ..+.+|+|||+|.+...+.. ..........|+..++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~------------~~~~~~~~~~l~~~~~~-- 150 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV------------AEGALDAGNILKPMLAR-- 150 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS------------CTTSCCTHHHHHHHHHT--
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc------------cccchHHHHHHHHHHhc--
Confidence 8766421 12344444433 35689999999998631110 00012233334444432
Q ss_pred cCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCC
Q 012016 354 SSCGDERIIVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCT 392 (473)
Q Consensus 354 ~~~~~~~iiI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~ 392 (473)
..+++|++||.++ .+|+++++ ||+. |+++.|+
T Consensus 151 ----~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 151 ----GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp ----TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred ----CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 3478889998775 68999999 9984 9999986
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=1.2e-14 Score=147.68 Aligned_cols=151 Identities=17% Similarity=0.274 Sum_probs=111.6
Q ss_pred cccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----------CCceEEcccc
Q 012016 219 ETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----------NFDVYDLELT 287 (473)
Q Consensus 219 ~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----------~~~~~~l~~~ 287 (473)
++++|.++..+.+.+.+..++.. ..+++++|+||||||||++++++++.+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999888888877665542 225689999999999999999999998 8999999876
Q ss_pred ccc-Cc-----------------------hH-HHHHHHHhcc-CceEEEeccccccccccCCccccCCCCCCCccchhHH
Q 012016 288 ELR-SN-----------------------SD-LRTLLVATAN-RSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVT 341 (473)
Q Consensus 288 ~~~-~~-----------------------~~-l~~l~~~~~~-~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (473)
... +. .. +..++..... +.||+|||+|.+... .....
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~-----------------~~~~~ 153 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKR-----------------RGGDI 153 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHS-----------------TTSHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccC-----------------CCCce
Confidence 543 11 11 2222222222 339999999998530 01223
Q ss_pred -HHHHHHHhcccccCCCCceEEEEecCCC---CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 342 -LSGFLNFIDGLWSSCGDERIIVFTTNHK---EKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 342 -ls~LL~~ldg~~~~~~~~~iiI~tTN~~---~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
+..|+... .++.+|+|||.+ +.+++++++ ||+..|+|+.++.++...++..++.
T Consensus 154 ~l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 154 VLYQLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp HHHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred eHHHHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 44444332 358899999987 788999988 8877999999999999999998764
No 60
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.58 E-value=4.1e-14 Score=144.30 Aligned_cols=174 Identities=18% Similarity=0.245 Sum_probs=113.3
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHh-----------------hhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceE
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYR-----------------RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~-----------------~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~ 282 (473)
.|+|+++.|+.|...+...+.+..... ......+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999999887754443322100 011234568999999999999999999999999999
Q ss_pred EcccccccC--------chHHHHHHHHh------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHH
Q 012016 283 DLELTELRS--------NSDLRTLLVAT------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNF 348 (473)
Q Consensus 283 ~l~~~~~~~--------~~~l~~l~~~~------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ 348 (473)
.+++..+.. ...+..++... ..++||||||+|.+...+. .... ..+.......+.|+..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~--~~~~-----~~~~~~~~~~~~Ll~~ 174 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSE--NRSI-----TRDVSGEGVQQALLKI 174 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------------------CHHHHHHHHHH
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcC--CCce-----ecccchHHHHHHHHHH
Confidence 999887631 22344444432 2679999999999864211 1000 1111223477888998
Q ss_pred hccccc----C-------------CCCceEEEEecCCC-----------------------------------------C
Q 012016 349 IDGLWS----S-------------CGDERIIVFTTNHK-----------------------------------------E 370 (473)
Q Consensus 349 ldg~~~----~-------------~~~~~iiI~tTN~~-----------------------------------------~ 370 (473)
|++..- . ...++++|+|||.. .
T Consensus 175 le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 254 (376)
T 1um8_A 175 VEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTY 254 (376)
T ss_dssp HHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHT
T ss_pred hhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhc
Confidence 886410 0 01345777777621 1
Q ss_pred CCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 012016 371 KLDPALLRPGRMDVHVHMSYCTPSGFKLLAAN 402 (473)
Q Consensus 371 ~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~ 402 (473)
.+.|+|+. ||+..+.|+.++.++...|+..
T Consensus 255 ~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 255 GLIPELIG--RLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp TCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred CCChHHhc--CCCceeeccCCCHHHHHHHHhh
Confidence 24566777 9999999999999999888874
No 61
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.57 E-value=1.1e-14 Score=151.87 Aligned_cols=189 Identities=17% Similarity=0.274 Sum_probs=117.9
Q ss_pred CCCCCCccccc-cchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEcc
Q 012016 212 LDHPATFETLA-MEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLE 285 (473)
Q Consensus 212 ~~~p~~f~~l~-~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~ 285 (473)
+.+..+|++++ |..... ....+..+...+ +. ..+++||||||||||+|++++|+++ +.+++.++
T Consensus 98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 44456899987 533222 223333333321 11 5689999999999999999999998 88899888
Q ss_pred cccccCc-------hHHHHHHHHhc-cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCC
Q 012016 286 LTELRSN-------SDLRTLLVATA-NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCG 357 (473)
Q Consensus 286 ~~~~~~~-------~~l~~l~~~~~-~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~ 357 (473)
+..+... .....+..... ++.||||||+|.+.. .......|+..++.+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~-------------------~~~~q~~l~~~l~~l~~~-- 226 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG-------------------KTGVQTELFHTFNELHDS-- 226 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS-------------------CHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC-------------------ChHHHHHHHHHHHHHHHC--
Confidence 7765210 11112222334 689999999998843 012334455555444322
Q ss_pred CceEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHHhCccccCCH-HHHHHHHhcCCCCHHHHHH
Q 012016 358 DERIIVFTTNHKEK---LDPALLRPGRMD--VHVHMSYCTPSGFKLLAANYLGIKEHILF-EEIEELISTTQVTPAEVAE 431 (473)
Q Consensus 358 ~~~iiI~tTN~~~~---ld~aLlrpgRfd--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~~~t~a~i~~ 431 (473)
+..+||.|.+.+.. ++++|++ ||. ..++++.|+.+++..++...+......+. +.+..++.....++.++..
T Consensus 227 ~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 227 GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHH
Confidence 23555555555554 8899998 886 78999999999999999988754332222 2233344444455555544
Q ss_pred HH
Q 012016 432 QL 433 (473)
Q Consensus 432 ~l 433 (473)
.|
T Consensus 305 ~L 306 (440)
T 2z4s_A 305 AI 306 (440)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 62
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.56 E-value=2.1e-14 Score=144.10 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=100.6
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC-------c-----
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-------D----- 280 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~-------~----- 280 (473)
.+|.+|++++|.+..++.+... ...+ ...++||+||||||||++|+++|+.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~----~~~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLT----AVDP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHH----HHCG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHH----hhCC---------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 3567899999998866543221 1111 1346999999999999999999999863 2
Q ss_pred ---------------------eEEccccc----ccCchHHHHHHHHh-----------ccCceEEEeccccccccccCCc
Q 012016 281 ---------------------VYDLELTE----LRSNSDLRTLLVAT-----------ANRSILVVEDIDCTIDLQDRLP 324 (473)
Q Consensus 281 ---------------------~~~l~~~~----~~~~~~l~~l~~~~-----------~~~sIL~iDdiD~l~~~~~r~~ 324 (473)
++.+.... +.+...+...+... ..+++|||||||.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------- 157 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE------- 157 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-------
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-------
Confidence 11111100 00111112222211 247899999999873
Q ss_pred cccCCCCCCCccchhHHHHHHHHHhccc----ccCC-----CCceEEEEecCCCC-CCCccccCCCceeeEEEeCCC-CH
Q 012016 325 ADIAGEGEGPIQQNKVTLSGFLNFIDGL----WSSC-----GDERIIVFTTNHKE-KLDPALLRPGRMDVHVHMSYC-TP 393 (473)
Q Consensus 325 ~~~~~~~~~~~~~~~~~ls~LL~~ldg~----~~~~-----~~~~iiI~tTN~~~-~ld~aLlrpgRfd~~I~~~~p-~~ 393 (473)
......|+..++.- .... +..+++|+|||..+ .++++|++ ||+.+++++.| +.
T Consensus 158 --------------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~ 221 (350)
T 1g8p_A 158 --------------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDV 221 (350)
T ss_dssp --------------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSH
T ss_pred --------------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcH
Confidence 23455666666531 1111 12578899999754 89999999 99999999999 67
Q ss_pred HHHHHHHHHHh
Q 012016 394 SGFKLLAANYL 404 (473)
Q Consensus 394 ~~r~~l~~~~l 404 (473)
+.+..|+...+
T Consensus 222 ~~~~~il~~~~ 232 (350)
T 1g8p_A 222 ETRVEVIRRRD 232 (350)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77778887643
No 63
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=4.9e-14 Score=141.90 Aligned_cols=180 Identities=11% Similarity=0.156 Sum_probs=115.9
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc-CC-----------
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NF----------- 279 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l-~~----------- 279 (473)
...|.+|++++|+++..+.+...+. . .| ..+. ++|+||||||||++++++|+.+ +.
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~---~-------~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD---Q-------PR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT---C-------TT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh---h-------CC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 4578999999998877665543320 1 12 2233 9999999999999999999964 21
Q ss_pred -----------------ceEEcccccccCch--HHHHHHHHh----------------ccCceEEEeccccccccccCCc
Q 012016 280 -----------------DVYDLELTELRSNS--DLRTLLVAT----------------ANRSILVVEDIDCTIDLQDRLP 324 (473)
Q Consensus 280 -----------------~~~~l~~~~~~~~~--~l~~l~~~~----------------~~~sIL~iDdiD~l~~~~~r~~ 324 (473)
+++.++........ .+++.+... .++.||+|||++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~------- 147 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT------- 147 (354)
T ss_dssp -----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-------
T ss_pred ecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-------
Confidence 12333333221111 345544432 246699999999852
Q ss_pred cccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHh
Q 012016 325 ADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYL 404 (473)
Q Consensus 325 ~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l 404 (473)
....+.|++.|+... .+..+|++||.++.+.+++.+ |+ ..++|+.|+.++...++...+
T Consensus 148 --------------~~~~~~L~~~le~~~----~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 148 --------------KDAQAALRRTMEKYS----KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp --------------HHHHHHHHHHHHHST----TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhhc----CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHH
Confidence 234566777776532 357888999999999999998 88 789999999999999998877
Q ss_pred CccccCC--HHHHHHHHhcCCCCHHHHHH
Q 012016 405 GIKEHIL--FEEIEELISTTQVTPAEVAE 431 (473)
Q Consensus 405 ~~~~~~l--~~~i~~l~~~~~~t~a~i~~ 431 (473)
..++... .+.++.++...+-++.++..
T Consensus 207 ~~~~~~~~~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 207 TNERIQLETKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp HHHTCEECCSHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCCCCcHHHHHHHHHHcCCCHHHHHH
Confidence 5443222 23334444333344444433
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.55 E-value=3.5e-14 Score=157.80 Aligned_cols=160 Identities=14% Similarity=0.221 Sum_probs=113.5
Q ss_pred cccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCc---
Q 012016 219 ETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSN--- 292 (473)
Q Consensus 219 ~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~--- 292 (473)
+.++|.+..++.+...+........ . ...+..++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~---~-~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK---D-PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS---C-TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC---C-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 4578888888887776654332100 0 01112269999999999999999999998 789999999987432
Q ss_pred --hHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccC-------CCCceEEE
Q 012016 293 --SDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSS-------CGDERIIV 363 (473)
Q Consensus 293 --~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~-------~~~~~iiI 363 (473)
..+...+. ...++||||||||.+ ....++.|+..||.-.-. ...+++||
T Consensus 567 ~~~~l~~~~~-~~~~~vl~lDEi~~~---------------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 624 (758)
T 3pxi_A 567 SGGQLTEKVR-RKPYSVVLLDAIEKA---------------------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILI 624 (758)
T ss_dssp C---CHHHHH-HCSSSEEEEECGGGS---------------------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEE
T ss_pred ccchhhHHHH-hCCCeEEEEeCcccc---------------------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEE
Confidence 23333332 245789999999976 245677888888752111 11357999
Q ss_pred EecCCCCC------------CCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 364 FTTNHKEK------------LDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 364 ~tTN~~~~------------ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
+|||.+.. ++|+|+. |||..|.|+.|+.+++..|+..++..
T Consensus 625 ~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 625 MTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp EEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred EeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 99997544 7888888 99999999999999999999988753
No 65
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=9.3e-14 Score=141.10 Aligned_cols=160 Identities=16% Similarity=0.104 Sum_probs=114.6
Q ss_pred CccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----CCceEEcccccccCc
Q 012016 217 TFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELTELRSN 292 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----~~~~~~l~~~~~~~~ 292 (473)
.+++++|.++..+.+...+...+.+.. +..+.++|+||||||||++++++++.+ +.+++.+++....+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~-------~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTT-------SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCC-------CCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 347899999988888887776554311 112389999999999999999999998 678888887654321
Q ss_pred h----------------------H----HHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHH
Q 012016 293 S----------------------D----LRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFL 346 (473)
Q Consensus 293 ~----------------------~----l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL 346 (473)
. . +...+.....+.||+|||+|.+ ....+..|+
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l---------------------~~~~~~~L~ 146 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL---------------------APDILSTFI 146 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS---------------------CHHHHHHHH
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc---------------------chHHHHHHH
Confidence 1 1 1112222245789999999976 134566777
Q ss_pred HHhcccccCCCCceEEEEecCCC---CCCCccccCCCceee-EEEeCCCCHHHHHHHHHHHhCc
Q 012016 347 NFIDGLWSSCGDERIIVFTTNHK---EKLDPALLRPGRMDV-HVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 347 ~~ldg~~~~~~~~~iiI~tTN~~---~~ld~aLlrpgRfd~-~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
..++........++.+|++||.+ +.+++.+.+ ||.. .|+|+.++.++...++...+..
T Consensus 147 ~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 147 RLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp HHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence 77765422111357888999988 678888887 8875 8999999999999999887653
No 66
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=3.6e-14 Score=143.59 Aligned_cols=159 Identities=16% Similarity=0.235 Sum_probs=111.5
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc------CCceEEcccccc
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------NFDVYDLELTEL 289 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l------~~~~~~l~~~~~ 289 (473)
..+++++|.++..+.+.+.+...+.. ..++.++|+||||||||+|++++++.+ +.+++.+++...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 44588999888777766544432221 235689999999999999999999998 888988886542
Q ss_pred cC----------------------chH-HHHH---HHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHH
Q 012016 290 RS----------------------NSD-LRTL---LVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLS 343 (473)
Q Consensus 290 ~~----------------------~~~-l~~l---~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls 343 (473)
.+ ... +..+ +.....+.||+|||+|.+... .....+.
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~-----------------~~~~~l~ 150 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKK-----------------YNDDILY 150 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHS-----------------SCSTHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhcc-----------------CcCHHHH
Confidence 11 112 2222 222234789999999998531 0134567
Q ss_pred HHHHHhcccccCCCCceEEEEecCCC---CCCCccccCCCcee-eEEEeCCCCHHHHHHHHHHHhC
Q 012016 344 GFLNFIDGLWSSCGDERIIVFTTNHK---EKLDPALLRPGRMD-VHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 344 ~LL~~ldg~~~~~~~~~iiI~tTN~~---~~ld~aLlrpgRfd-~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
.|+..++.. .+.++.+|++||.+ +.+++.+.+ ||. ..|+|+.++.++...++...+.
T Consensus 151 ~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 151 KLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp HHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 777777654 22458888999877 567888887 665 5899999999999999998764
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.52 E-value=1e-13 Score=154.01 Aligned_cols=154 Identities=15% Similarity=0.285 Sum_probs=113.2
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCC----CCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCc---
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSN--- 292 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~--- 292 (473)
.++|.++.++.+...+... +.|.. +..++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 4667777777666554422 22321 23369999999999999999999999999999998876321
Q ss_pred ----------------hHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccccc--
Q 012016 293 ----------------SDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWS-- 354 (473)
Q Consensus 293 ----------------~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~-- 354 (473)
..+...+.. ..++||||||||.+. ...++.|+..||.-.-
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~---------------------~~~~~~Ll~~le~~~~~~ 588 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAH---------------------PDVFNILLQVMDNGTLTD 588 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSC---------------------HHHHHHHHHHHHHSEEEE
T ss_pred hhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccC---------------------HHHHHHHHHHhcCcEEEc
Confidence 123333332 457999999999762 3577888888874211
Q ss_pred CCC-----CceEEEEecCCCC-------------------------CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHh
Q 012016 355 SCG-----DERIIVFTTNHKE-------------------------KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYL 404 (473)
Q Consensus 355 ~~~-----~~~iiI~tTN~~~-------------------------~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l 404 (473)
..| .+++||+|||... .++|+|+. |||..|.|+.|+.+++..|+..++
T Consensus 589 ~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 589 NNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp TTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHH
Confidence 111 3578999999753 67888998 999999999999999999999887
Q ss_pred C
Q 012016 405 G 405 (473)
Q Consensus 405 ~ 405 (473)
.
T Consensus 667 ~ 667 (758)
T 1r6b_X 667 V 667 (758)
T ss_dssp H
T ss_pred H
Confidence 5
No 68
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=2.1e-13 Score=137.15 Aligned_cols=157 Identities=24% Similarity=0.350 Sum_probs=111.8
Q ss_pred cceeccCCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC-----Cc
Q 012016 206 AWIPVNLDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FD 280 (473)
Q Consensus 206 ~w~~~~~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~-----~~ 280 (473)
.|.. ...|.+|++++|++.+++.+... +.. |. .+ ++||+||||||||++++++|+.+. ..
T Consensus 14 ~~~~--k~rp~~~~~~~g~~~~~~~L~~~----i~~-------g~-~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~ 78 (340)
T 1sxj_C 14 PWVE--KYRPETLDEVYGQNEVITTVRKF----VDE-------GK-LP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNM 78 (340)
T ss_dssp CHHH--HTCCSSGGGCCSCHHHHHHHHHH----HHT-------TC-CC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred chHH--HhCCCcHHHhcCcHHHHHHHHHH----Hhc-------CC-Cc-eEEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence 4543 35778999999988776655443 332 21 22 399999999999999999999873 34
Q ss_pred eEEcccccccCchHHHHHHHHh--------ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc
Q 012016 281 VYDLELTELRSNSDLRTLLVAT--------ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL 352 (473)
Q Consensus 281 ~~~l~~~~~~~~~~l~~l~~~~--------~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 352 (473)
+..++.++..+...+++.+... ..+.|++|||+|.+. ....+.|+..++..
T Consensus 79 ~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~---------------------~~~~~~L~~~le~~ 137 (340)
T 1sxj_C 79 VLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT---------------------NAAQNALRRVIERY 137 (340)
T ss_dssp EEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC---------------------HHHHHHHHHHHHHT
T ss_pred EEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC---------------------HHHHHHHHHHHhcC
Confidence 6666666543444455444322 136899999999873 23455677777653
Q ss_pred ccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 353 WSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 353 ~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
.....+|++||.+..+.|++++ |+. .+.|+.++.++....+...+.
T Consensus 138 ----~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 138 ----TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred ----CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHH
Confidence 2457788889999999999998 886 789999999988887776663
No 69
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.51 E-value=4.6e-13 Score=134.54 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=105.9
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcC------------------------CceEEcccc---cccCchHHHHHHHHhc-
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLN------------------------FDVYDLELT---ELRSNSDLRTLLVATA- 303 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~------------------------~~~~~l~~~---~~~~~~~l~~l~~~~~- 303 (473)
.+++|||+||||||||++++++|+.+. .+++.++.. .-.+...+++++....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhh
Confidence 466899999999999999999999874 245555543 2223456777766543
Q ss_pred -----cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccC
Q 012016 304 -----NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLR 378 (473)
Q Consensus 304 -----~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlr 378 (473)
.+.|++|||+|.+. ....+.||+.++. ++...++|++||.++.+.|++++
T Consensus 103 ~~~~~~~kvviIdead~l~---------------------~~a~naLLk~lEe----p~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLT---------------------DAAANALLKTLEE----PPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp CCTTSSCEEEEESCGGGBC---------------------HHHHHHHHHHHTS----CCTTEEEEEEESCGGGSCHHHHT
T ss_pred ccccCCcEEEEECchhhcC---------------------HHHHHHHHHHhcC----CCCCeEEEEEeCChHhCcHHHhh
Confidence 46899999999873 3456788888875 34568899999999999999998
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcCCCCHHHH
Q 012016 379 PGRMDVHVHMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTTQVTPAEV 429 (473)
Q Consensus 379 pgRfd~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~t~a~i 429 (473)
|+. .++|+.|+.++...++...... ..+.+..++..++-++..+
T Consensus 158 --Rc~-~~~~~~~~~~~~~~~L~~~~~~----~~~~~~~l~~~s~G~~r~a 201 (334)
T 1a5t_A 158 --RCR-LHYLAPPPEQYAVTWLSREVTM----SQDALLAALRLSAGSPGAA 201 (334)
T ss_dssp --TSE-EEECCCCCHHHHHHHHHHHCCC----CHHHHHHHHHHTTTCHHHH
T ss_pred --cce-eeeCCCCCHHHHHHHHHHhcCC----CHHHHHHHHHHcCCCHHHH
Confidence 874 7999999999998888876522 2233444444444444443
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=4.7e-14 Score=158.69 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=104.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceEE
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 283 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~ 283 (473)
.|..|+.++|.++..+.+++.+. + ..++++||+||||||||++++++|+.+ +.+++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~----~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL----R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH----C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHh----c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 35789999999877777665442 2 225689999999999999999999998 889999
Q ss_pred cccccccC--------chHHHHHHHHhc---cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc
Q 012016 284 LELTELRS--------NSDLRTLLVATA---NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL 352 (473)
Q Consensus 284 l~~~~~~~--------~~~l~~l~~~~~---~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 352 (473)
++++.+.. ...+..++..+. .++||||||+|.+.+.... .......+.|...++.
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~-------------~g~~~~~~~L~~~l~~- 297 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA-------------EGAVDAGNMLKPALAR- 297 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------------------HHHHHT-
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc-------------cchHHHHHHHHHHHhC-
Confidence 99887632 134666666553 5689999999998642110 0011222333333332
Q ss_pred ccCCCCceEEEEecCCCC----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 353 WSSCGDERIIVFTTNHKE----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 353 ~~~~~~~~iiI~tTN~~~----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
.++.+|++||.++ .+|++|+| ||+. |.++.|+.+++..|++.++.
T Consensus 298 -----~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 298 -----GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp -----TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred -----CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 3477888888775 47999999 9986 99999999999999986654
No 71
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.51 E-value=1e-13 Score=145.66 Aligned_cols=147 Identities=16% Similarity=0.217 Sum_probs=105.2
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceE
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 282 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~ 282 (473)
..|..|+.++|.++..+.+++.+. + ..+.++||+||||||||++++++|+.+ +.+++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~----r---------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLS----R---------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHH----C---------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHh----c---------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 345789999999888877766443 1 225689999999999999999999997 78899
Q ss_pred Ecccccc-c--CchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCC
Q 012016 283 DLELTEL-R--SNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCG 357 (473)
Q Consensus 283 ~l~~~~~-~--~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~ 357 (473)
.++++.. . ....+..++.... .++||||| .. ....+.|+..|+ .
T Consensus 241 ~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~--------------------~~a~~~L~~~L~------~ 289 (468)
T 3pxg_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--------------------IDASNILKPSLA------R 289 (468)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------------CCCTT------S
T ss_pred EeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc--------------------hhHHHHHHHhhc------C
Confidence 9888721 1 1245667776554 57899999 11 112233444443 1
Q ss_pred CceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 358 DERIIVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 358 ~~~iiI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
..+.+|++||.++ .+|++|+| ||. .|.|+.|+.+++..|++.++..
T Consensus 290 g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred CCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHH
Confidence 3588999999987 69999999 998 5999999999999999987764
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.50 E-value=7.5e-14 Score=135.23 Aligned_cols=155 Identities=16% Similarity=0.182 Sum_probs=99.9
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC---CceEEcccccccCc
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELTELRSN 292 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~---~~~~~l~~~~~~~~ 292 (473)
.+|++++|.....+.+.+.+..... .+.++||+||||||||++|+++++.+. .+++.++++.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~- 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE- 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-
Confidence 4789999998888888777765432 246899999999999999999999985 6899999987632
Q ss_pred hHHHH-HH-----------------HHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc-
Q 012016 293 SDLRT-LL-----------------VATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW- 353 (473)
Q Consensus 293 ~~l~~-l~-----------------~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~- 353 (473)
..+.. +| .....+++|||||||.+.. .....|+..++...
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~---------------------~~q~~Ll~~l~~~~~ 129 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM---------------------MVQEKLLRVIEYGEL 129 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH---------------------HHHHHHHHHHHHCEE
T ss_pred hHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH---------------------HHHHHHHHHHHhCCe
Confidence 22221 11 1113468999999998732 33455666665321
Q ss_pred c------CCCCceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHHhC
Q 012016 354 S------SCGDERIIVFTTNHK-------EKLDPALLRPGRMD-VHVHMSYCTP--SGFKLLAANYLG 405 (473)
Q Consensus 354 ~------~~~~~~iiI~tTN~~-------~~ld~aLlrpgRfd-~~I~~~~p~~--~~r~~l~~~~l~ 405 (473)
. .....+.||+|||.+ ..++++|.. ||+ ..|.+|.... +....|+..++.
T Consensus 130 ~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~ 195 (265)
T 2bjv_A 130 ERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAI 195 (265)
T ss_dssp CCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred ecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHH
Confidence 0 001246788899874 357888888 886 4566666544 456666666653
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.47 E-value=3e-13 Score=150.23 Aligned_cols=158 Identities=22% Similarity=0.290 Sum_probs=110.5
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceEE
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 283 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~~ 283 (473)
.|..|+.++|.++..+.+++.+. . ..+.++||+||||||||++++++|+.+ +..++.
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~----~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLC----R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT----S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hcCCCCCccCCHHHHHHHHHHHh----c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 34689999999887777655432 1 236789999999999999999999987 677888
Q ss_pred cccccccC--------chHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc
Q 012016 284 LELTELRS--------NSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW 353 (473)
Q Consensus 284 l~~~~~~~--------~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 353 (473)
+++..+.. ...++.++.... .++||||||+|.+.+... ......... +.+..+.
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~------------~~~~~~~~~----~~L~~~l 311 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGA------------ASGGQVDAA----NLIKPLL 311 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCC------------SSSCHHHHH----HHHSSCS
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCC------------CCcchHHHH----HHHHHHH
Confidence 88766532 245667776665 379999999999864110 001112222 2222222
Q ss_pred cCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 354 SSCGDERIIVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 354 ~~~~~~~iiI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
.. .++.+|++||.++ .+|++|.| ||+ .|.|+.|+.+++..++..+..
T Consensus 312 ~~--~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 312 SS--GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp SS--CCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred hC--CCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 22 3578888888653 57899999 998 699999999999999887653
No 74
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.46 E-value=9.4e-14 Score=122.51 Aligned_cols=131 Identities=11% Similarity=0.104 Sum_probs=88.9
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCchHHH
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNSDLR 296 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~ 296 (473)
+++|.....+.+.+.+..... ....+||+||||||||++|+++++.. +.+++ +++..+.....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 466777777777776664432 24579999999999999999999987 77899 9999876655565
Q ss_pred HHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCC-------
Q 012016 297 TLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHK------- 369 (473)
Q Consensus 297 ~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~------- 369 (473)
..+..+ .+++|||||||.+. ......|+..|... ...+.+|+|||.+
T Consensus 70 ~~~~~a-~~g~l~ldei~~l~---------------------~~~q~~Ll~~l~~~----~~~~~~I~~t~~~~~~~~~~ 123 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHLT---------------------REQQYHLVQLQSQE----HRPFRLIGIGDTSLVELAAS 123 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGSC---------------------HHHHHHHHHHHHSS----SCSSCEEEEESSCHHHHHHH
T ss_pred cHHHHc-CCcEEEEcChHHCC---------------------HHHHHHHHHHHhhc----CCCEEEEEECCcCHHHHHHc
Confidence 655543 66899999999873 23345566666432 2345678888864
Q ss_pred CCCCccccCCCcee-eEEEeCC
Q 012016 370 EKLDPALLRPGRMD-VHVHMSY 390 (473)
Q Consensus 370 ~~ld~aLlrpgRfd-~~I~~~~ 390 (473)
..+++.|.. |+. ..|++|.
T Consensus 124 ~~~~~~L~~--rl~~~~i~lPp 143 (145)
T 3n70_A 124 NHIIAELYY--CFAMTQIACLP 143 (145)
T ss_dssp SCCCHHHHH--HHHHHEEECCC
T ss_pred CCCCHHHHH--HhcCCEEeCCC
Confidence 234455544 442 3466654
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.44 E-value=4.6e-13 Score=148.73 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=106.0
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----------CCceE
Q 012016 213 DHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 282 (473)
Q Consensus 213 ~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----------~~~~~ 282 (473)
..|..|+.++|.++.++.+++.+. + ..+.++||+||||||||++|+++|+.+ +.+++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~----~---------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLS----R---------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHH----C---------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHh----C---------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 345689999999988887766543 1 235689999999999999999999997 88888
Q ss_pred Ecccccc---cCchHHHHHHHHhc--cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCC
Q 012016 283 DLELTEL---RSNSDLRTLLVATA--NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCG 357 (473)
Q Consensus 283 ~l~~~~~---~~~~~l~~l~~~~~--~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~ 357 (473)
.+++..- .....++.++..+. .++||||| .. ....+.|+..|+ .
T Consensus 241 ~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~--------------------~~~~~~L~~~l~------~ 289 (758)
T 3pxi_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--------------------IDASNILKPSLA------R 289 (758)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------------CCCTT------S
T ss_pred EecccccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc--------------------hhHHHHHHHHHh------c
Confidence 8887221 12346777776654 57999999 10 112233443433 1
Q ss_pred CceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCc
Q 012016 358 DERIIVFTTNHKE-----KLDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 358 ~~~iiI~tTN~~~-----~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
.++.+|+|||..+ .+||+|+| ||. .|.|+.|+.+++..|++.+...
T Consensus 290 ~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred CCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 4588999999988 79999999 995 5999999999999999987654
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.39 E-value=2.4e-12 Score=127.72 Aligned_cols=151 Identities=17% Similarity=0.231 Sum_probs=99.8
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCchHHH
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNSDLR 296 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~ 296 (473)
+++|.....+.+.+.+.... +.+.++||+||||||||++|+++++.. +.+++.++|+.+... .+.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~-l~~ 70 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNES-LLE 70 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHH-HHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChH-HHH
Confidence 56777777777777666443 124689999999999999999999976 678999998876321 111
Q ss_pred -HHH-----------------HHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccccc----
Q 012016 297 -TLL-----------------VATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWS---- 354 (473)
Q Consensus 297 -~l~-----------------~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~---- 354 (473)
++| .....+++|||||||.+.. .....|+..++...-
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~---------------------~~q~~Ll~~l~~~~~~~~g 129 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP---------------------LMQVRLLRAIQEREVQRVG 129 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH---------------------HHHHHHHHHHHSSBCCBTT
T ss_pred HHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH---------------------HHHHHHHHHHhcCEeeecC
Confidence 111 1123468999999998732 345567777664320
Q ss_pred ---CCCCceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCC--HHHHHHHHHHHhC
Q 012016 355 ---SCGDERIIVFTTNHK-------EKLDPALLRPGRMD-VHVHMSYCT--PSGFKLLAANYLG 405 (473)
Q Consensus 355 ---~~~~~~iiI~tTN~~-------~~ld~aLlrpgRfd-~~I~~~~p~--~~~r~~l~~~~l~ 405 (473)
.....+.||+|||.. ..++++|.. ||. ..|++|... .+....|+..|+.
T Consensus 130 ~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 130 SNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp BCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred CcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 011347788899875 346677777 774 446666655 4556667777664
No 77
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=1.4e-12 Score=129.37 Aligned_cols=123 Identities=19% Similarity=0.258 Sum_probs=97.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc------CCceEEccccc-ccCchHHHHHHHHhc------cCceEEEecccccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL------NFDVYDLELTE-LRSNSDLRTLLVATA------NRSILVVEDIDCTIDL 319 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l------~~~~~~l~~~~-~~~~~~l~~l~~~~~------~~sIL~iDdiD~l~~~ 319 (473)
...||||||||||||++++++|+.+ +.+++.++.+. -.+...+++++..+. ...|+||||+|.+.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt-- 95 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-- 95 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC--
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhC--
Confidence 3589999999999999999999863 45788887653 234456777776653 35799999999873
Q ss_pred ccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHH
Q 012016 320 QDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLL 399 (473)
Q Consensus 320 ~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l 399 (473)
....+.||..|+. +++..++|++||.+.++.|++++ | .++|+.|+.++....
T Consensus 96 -------------------~~a~naLLk~LEe----p~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~ 147 (305)
T 2gno_A 96 -------------------QQAANAFLKALEE----PPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDL 147 (305)
T ss_dssp -------------------HHHHHHTHHHHHS----CCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHH
T ss_pred -------------------HHHHHHHHHHHhC----CCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHH
Confidence 3456788988885 34568888889999999999999 7 789999999998888
Q ss_pred HHHHhC
Q 012016 400 AANYLG 405 (473)
Q Consensus 400 ~~~~l~ 405 (473)
+...++
T Consensus 148 L~~~~~ 153 (305)
T 2gno_A 148 VKEKIG 153 (305)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 877653
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.38 E-value=1.8e-12 Score=145.88 Aligned_cols=159 Identities=18% Similarity=0.293 Sum_probs=111.9
Q ss_pred cccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCc---
Q 012016 219 ETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSN--- 292 (473)
Q Consensus 219 ~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~--- 292 (473)
+.++|.+..++.+...+.....+.. . ...+..++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~---~-~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLK---D-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCS---C-SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccC---C-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 4567777777777666553321100 0 01122479999999999999999999999 789999999876432
Q ss_pred ----------------hHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccC-
Q 012016 293 ----------------SDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSS- 355 (473)
Q Consensus 293 ----------------~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~- 355 (473)
..+...+.. ...+||||||||.+ ....++.|+..||.-.-.
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l---------------------~~~~~~~Ll~~l~~~~~~~ 691 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKA---------------------HPDVFNILLQILDDGRLTD 691 (854)
T ss_dssp GGC--------------CHHHHHHH-CSSEEEEESSGGGS---------------------CHHHHHHHHHHHTTTEECC
T ss_pred HHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEeccccc---------------------CHHHHHHHHHHhccCceEC
Confidence 112222222 34689999999976 245778888888743211
Q ss_pred -CC-----CceEEEEecCCC--------------------------CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012016 356 -CG-----DERIIVFTTNHK--------------------------EKLDPALLRPGRMDVHVHMSYCTPSGFKLLAANY 403 (473)
Q Consensus 356 -~~-----~~~iiI~tTN~~--------------------------~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~ 403 (473)
.+ .+.+||+|||.. ..+.|+|+. |||..+.|.+|+.+++..|+..+
T Consensus 692 ~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~ 769 (854)
T 1qvr_A 692 SHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQ 769 (854)
T ss_dssp SSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHH
T ss_pred CCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHH
Confidence 11 357899999972 346777777 99999999999999999999988
Q ss_pred hC
Q 012016 404 LG 405 (473)
Q Consensus 404 l~ 405 (473)
+.
T Consensus 770 l~ 771 (854)
T 1qvr_A 770 LS 771 (854)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.37 E-value=3.5e-13 Score=118.61 Aligned_cols=131 Identities=13% Similarity=0.032 Sum_probs=86.5
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHH
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLL 299 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~ 299 (473)
+++|.+...+.+.+.+..+.. ...++||+||||||||++|+++++..+ +++.++++.+.. .....++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~-~~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI-DMPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH-HCHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh-HhhhhHH
Confidence 466777777888777775543 245799999999999999999999998 999999987632 1234444
Q ss_pred HHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCC-CC----CCc
Q 012016 300 VATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHK-EK----LDP 374 (473)
Q Consensus 300 ~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~-~~----ld~ 374 (473)
. ...+++|||||||.+.. .....|+..++... ..++.+|+|||.+ +. +++
T Consensus 72 ~-~a~~~~l~lDei~~l~~---------------------~~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 72 Q-KAEGGVLYVGDIAQYSR---------------------NIQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp H-HTTTSEEEEEECTTCCH---------------------HHHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHH
T ss_pred H-hCCCCeEEEeChHHCCH---------------------HHHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccH
Confidence 4 34578999999998732 23344566665432 2346778888754 33 333
Q ss_pred cccCCCce-eeEEEeCC
Q 012016 375 ALLRPGRM-DVHVHMSY 390 (473)
Q Consensus 375 aLlrpgRf-d~~I~~~~ 390 (473)
.|.. |+ ...|++|.
T Consensus 127 ~L~~--rl~~~~i~lPp 141 (143)
T 3co5_A 127 KLAG--LFSESVVRIPP 141 (143)
T ss_dssp HHHH--HSSSEEEEECC
T ss_pred HHHH--HhcCcEEeCCC
Confidence 4443 43 34667665
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=3.2e-13 Score=145.78 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=89.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcc----cccccC---chH------HHHHHHHhccCceEEEecccccccccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE----LTELRS---NSD------LRTLLVATANRSILVVEDIDCTIDLQD 321 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~----~~~~~~---~~~------l~~l~~~~~~~sIL~iDdiD~l~~~~~ 321 (473)
++||+||||||||+||+++|+.++..++... +..+.. ... +..-....+.++||||||||.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~---- 404 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMR---- 404 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCC----
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCC----
Confidence 7999999999999999999999987766532 222210 000 00001112357999999999873
Q ss_pred CCccccCCCCCCCccchhHHHHHHHHHhcccc---------cCCCCceEEEEecCCCC-------------CCCccccCC
Q 012016 322 RLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW---------SSCGDERIIVFTTNHKE-------------KLDPALLRP 379 (473)
Q Consensus 322 r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~---------~~~~~~~iiI~tTN~~~-------------~ld~aLlrp 379 (473)
....+.|+..|+.-. ........||+|||.+. .|+++|++
T Consensus 405 -----------------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~- 466 (595)
T 3f9v_A 405 -----------------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS- 466 (595)
T ss_dssp -----------------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG-
T ss_pred -----------------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh-
Confidence 234566777776321 11224578999999986 89999999
Q ss_pred Ccee-eEEEeCCCCHHHHHHHHHHHhCc
Q 012016 380 GRMD-VHVHMSYCTPSGFKLLAANYLGI 406 (473)
Q Consensus 380 gRfd-~~I~~~~p~~~~r~~l~~~~l~~ 406 (473)
||| ..+..++|+.+ ...|+.+.+..
T Consensus 467 -RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 467 -RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp -GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred -hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 998 46667778888 88888887764
No 81
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.34 E-value=1.9e-12 Score=117.84 Aligned_cols=128 Identities=18% Similarity=0.291 Sum_probs=82.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc----CCceEEcccccc
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELTEL 289 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l----~~~~~~l~~~~~ 289 (473)
.+.+|++++......+.+++.+..++.. ...+.+.+++|+||||||||+|++++++.+ |..++.++..++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3478999988655566666777766653 223346789999999999999999999987 667776666554
Q ss_pred cCc-------hHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEE
Q 012016 290 RSN-------SDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERII 362 (473)
Q Consensus 290 ~~~-------~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ii 362 (473)
... ......+....++.+|+|||++.... +......+..+++.. .. .+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~----------------~~~~~~~l~~ll~~~---~~---~~~~i 136 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERL----------------SDWQRELISYIITYR---YN---NLKST 136 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCC----------------CHHHHHHHHHHHHHH---HH---TTCEE
T ss_pred HHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcC----------------CHHHHHHHHHHHHHH---HH---cCCCE
Confidence 210 01113444556789999999985421 222334444444433 21 23677
Q ss_pred EEecCCC
Q 012016 363 VFTTNHK 369 (473)
Q Consensus 363 I~tTN~~ 369 (473)
|+|||.+
T Consensus 137 i~tsn~~ 143 (180)
T 3ec2_A 137 IITTNYS 143 (180)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 8888875
No 82
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.30 E-value=6.7e-12 Score=132.40 Aligned_cols=146 Identities=15% Similarity=0.132 Sum_probs=92.5
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCC--ceEEccccc-----ccCc
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELTE-----LRSN 292 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~--~~~~l~~~~-----~~~~ 292 (473)
.++|.+++++.+...+. . ..++||+||||||||++|+++|+.++. ++..+.+.. +.+.
T Consensus 23 ~ivGq~~~i~~l~~al~----~-----------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL----S-----------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHH----H-----------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHh----c-----------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 45677766665543321 1 358999999999999999999999853 444433321 1110
Q ss_pred hHH-----HHHHHHhc-----cCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc-------ccC
Q 012016 293 SDL-----RTLLVATA-----NRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL-------WSS 355 (473)
Q Consensus 293 ~~l-----~~l~~~~~-----~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-------~~~ 355 (473)
... ...+.... .++|||||||+.+ ...+.+.|+..|+.- ...
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~---------------------~~~~q~~LL~~lee~~v~i~G~~~~ 146 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA---------------------GPAILNTLLTAINERQFRNGAHVEK 146 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGC---------------------CHHHHHHHHHHHHSSEEECSSSEEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh---------------------cHHHHHHHHHHHHHHhccCCCCcCC
Confidence 000 11121111 4568999999865 245677788888531 111
Q ss_pred CCCceEEEEecCCCC---CCCccccCCCceeeEEEeCCCCH-HHHHHHHHHHh
Q 012016 356 CGDERIIVFTTNHKE---KLDPALLRPGRMDVHVHMSYCTP-SGFKLLAANYL 404 (473)
Q Consensus 356 ~~~~~iiI~tTN~~~---~ld~aLlrpgRfd~~I~~~~p~~-~~r~~l~~~~l 404 (473)
. +.+++|+|||.+. .+.+++++ ||..+|++++|+. +++..|+....
T Consensus 147 ~-~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 147 I-PMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp C-CCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred c-chhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 1 2346788888632 24459999 9999999999997 67888887654
No 83
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.24 E-value=5.8e-11 Score=121.45 Aligned_cols=164 Identities=9% Similarity=0.114 Sum_probs=105.7
Q ss_pred CccccccchHHHHHHHHHH-HHHHhchhHHhhhcCCCCceeEE--eCCCCCCHHHHHHHHHHhc---------CCceEEc
Q 012016 217 TFETLAMEQEQKTKIMQDL-ERFVKRKDYYRRVGKAWKRGYLL--YGPPGTGKSSLIAAMANYL---------NFDVYDL 284 (473)
Q Consensus 217 ~f~~l~~~~~~k~~l~~~l-~~fl~~~~~y~~~g~~~~rg~LL--~GPpGtGKT~la~alA~~l---------~~~~~~l 284 (473)
..+.++|.++..+.+.+.+ .....+. ...++.++| +||||+|||+|++++++.+ +.+++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3477899888888877766 5443220 012457999 9999999999999999887 5567777
Q ss_pred ccccccCc----------------------hH----HHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccch
Q 012016 285 ELTELRSN----------------------SD----LRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQN 338 (473)
Q Consensus 285 ~~~~~~~~----------------------~~----l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~ 338 (473)
++....+. .. +...+.....+.||+|||+|.+... ....
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~---------------~~~~ 157 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSS---------------PRIA 157 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSC---------------TTSC
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhc---------------cCcc
Confidence 76432111 11 1222222235789999999988420 0012
Q ss_pred hHHHHHHHHHhcccccCCC--CceEEEEecCCCC---CCC---ccccCCCceeeEEEeCCCCHHHHHHHHHHHhC
Q 012016 339 KVTLSGFLNFIDGLWSSCG--DERIIVFTTNHKE---KLD---PALLRPGRMDVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 339 ~~~ls~LL~~ldg~~~~~~--~~~iiI~tTN~~~---~ld---~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
...+..|+..++.... .+ ..+.+|+|||.++ .++ +.+.+ |+...++++.++.++..+++...+.
T Consensus 158 ~~~l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 158 AEDLYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp HHHHHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 3455556655554321 12 4578888887664 344 66666 5655699999999999999987654
No 84
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.23 E-value=2.9e-11 Score=147.61 Aligned_cols=137 Identities=20% Similarity=0.352 Sum_probs=99.5
Q ss_pred CceeEEeCCCCCCHHHHH-HHHHHhcCCceEEcccccccCchHHHHHHHHh-----------------ccCceEEEeccc
Q 012016 253 KRGYLLYGPPGTGKSSLI-AAMANYLNFDVYDLELTELRSNSDLRTLLVAT-----------------ANRSILVVEDID 314 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la-~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~-----------------~~~sIL~iDdiD 314 (473)
++++||+||||||||++| +++++..+++++.++++...+...+++.+... ..++|||||||+
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 469999999999999999 56666668899999998877777777776642 123699999998
Q ss_pred cccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCC------CceEEEEecCCCC-----CCCccccCCCcee
Q 012016 315 CTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCG------DERIIVFTTNHKE-----KLDPALLRPGRMD 383 (473)
Q Consensus 315 ~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~------~~~iiI~tTN~~~-----~ld~aLlrpgRfd 383 (473)
.... ++ .+.......+.+++. ..|++.... .++.+|+|||++. .|+|+|+| ||
T Consensus 1347 mp~~--d~----------yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1347 LPKL--DK----------YGSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp CSCC--CS----------SSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred cccc--cc----------cCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 6321 11 111223344555542 234443211 2478999999995 79999999 99
Q ss_pred eEEEeCCCCHHHHHHHHHHHhC
Q 012016 384 VHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 384 ~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
..|.++.|+.+++..|+..++.
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHH
Confidence 6899999999999999988764
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.21 E-value=3.9e-11 Score=111.00 Aligned_cols=96 Identities=25% Similarity=0.378 Sum_probs=66.4
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCC-CCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR 290 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~-~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~ 290 (473)
+.+|+++++.....+.+++.+..++.... .. .+++++|+||||||||+|++++++.+ +.+++.+++..+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYE------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCC------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhh------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 46899998876555666666666665321 11 12799999999999999999999988 6778777766531
Q ss_pred C-------chHHHHHHHHhccCceEEEeccccc
Q 012016 291 S-------NSDLRTLLVATANRSILVVEDIDCT 316 (473)
Q Consensus 291 ~-------~~~l~~l~~~~~~~sIL~iDdiD~l 316 (473)
. ...+...+....+..+|+|||++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 1 1112333444456679999999765
No 86
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.11 E-value=8.5e-11 Score=119.67 Aligned_cols=121 Identities=21% Similarity=0.270 Sum_probs=87.3
Q ss_pred hcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHHHhccCceEEEeccccccccccCCcccc
Q 012016 248 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADI 327 (473)
Q Consensus 248 ~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~ 327 (473)
.++++++.++|+||||+|||+|++++++.++..++.++... ......+....+..++++||++.+.....+. .
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l-~-- 236 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGESRDL-P-- 236 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTTTTTC-C--
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHHHhhc-c--
Confidence 37788889999999999999999999999988776644332 1223234455678889999999875421110 0
Q ss_pred CCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 012016 328 AGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSY 390 (473)
Q Consensus 328 ~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~ 390 (473)
..........+.+.+||. +.++++||+++.+ +++++|||++..+...+
T Consensus 237 -------~~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 237 -------SGQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp -------CCSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred -------ccCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 001112456677888863 5678899999999 89999999999888766
No 87
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.07 E-value=1.2e-10 Score=115.57 Aligned_cols=96 Identities=26% Similarity=0.419 Sum_probs=63.1
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC----CceEEccccccc
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLELTELR 290 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~----~~~~~l~~~~~~ 290 (473)
+.+|+++......+..+.+.+..|+... +..+..+++||||||||||+|+.++|+++. .+++.+.+..+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 3689999876544555666666666532 111357999999999999999999999764 777777665431
Q ss_pred -------CchHHHHHHHHhccCceEEEeccccc
Q 012016 291 -------SNSDLRTLLVATANRSILVVEDIDCT 316 (473)
Q Consensus 291 -------~~~~l~~l~~~~~~~sIL~iDdiD~l 316 (473)
....+...+....+..+|||||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 11112222333446689999999754
No 88
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.07 E-value=3.6e-10 Score=104.77 Aligned_cols=114 Identities=20% Similarity=0.196 Sum_probs=69.4
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHHHhccCceEEEeccccccccccCCccccC
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIA 328 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~ 328 (473)
+.|.++++|||||||||||+++.++|+.++-.++....+. ... .+.......|++|||+|.-.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----~l~~l~~~kIiiLDEad~~~----------- 116 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----WLEPLTDTKVAMLDDATTTC----------- 116 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----GGGGGTTCSSEEEEEECHHH-----------
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----hhcccCCCCEEEEECCCchh-----------
Confidence 4666778999999999999999999999976654432111 110 12233456799999998421
Q ss_pred CCCCCCccchhHHHHHHHHHhcccc----cCCC-----CceEEEEecCCC---CCCCccccCCCceeeEEEeCCC
Q 012016 329 GEGEGPIQQNKVTLSGFLNFIDGLW----SSCG-----DERIIVFTTNHK---EKLDPALLRPGRMDVHVHMSYC 391 (473)
Q Consensus 329 ~~~~~~~~~~~~~ls~LL~~ldg~~----~~~~-----~~~iiI~tTN~~---~~ld~aLlrpgRfd~~I~~~~p 391 (473)
.......+-+.+||.. .... ....+|.|||.. +.--+.|.. |+- .+.|+.|
T Consensus 117 ---------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~~ 179 (212)
T 1tue_A 117 ---------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPNA 179 (212)
T ss_dssp ---------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCSC
T ss_pred ---------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCCC
Confidence 1222234556777741 1110 124688899974 222245666 774 6777754
No 89
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.96 E-value=1.5e-09 Score=117.41 Aligned_cols=52 Identities=33% Similarity=0.357 Sum_probs=40.6
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
...|..|++++|.+.+++.+... +.. ...++|+||||||||+|+++||+.+.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~----i~~-----------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTA----ANQ-----------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHH----HHT-----------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhcccc----ccC-----------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34567899999988776554333 321 35899999999999999999999885
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.90 E-value=2.1e-09 Score=95.15 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=46.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCchHHHHHHHHhccCceEEEeccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSNSDLRTLLVATANRSILVVEDIDCT 316 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l 316 (473)
...++|+||+|+|||+|++++++.+ |..++.++..++... ....++.+|+|||++.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCcccc
Confidence 5689999999999999999999988 777888877766443 11346899999999875
No 91
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.88 E-value=2.5e-09 Score=125.77 Aligned_cols=147 Identities=13% Similarity=0.170 Sum_probs=90.3
Q ss_pred CCccccccchHHHHHHHHHHHHHHhc----------hhHHhh------hc------------CCCCceeEEeCCCCCCHH
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKR----------KDYYRR------VG------------KAWKRGYLLYGPPGTGKS 267 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~----------~~~y~~------~g------------~~~~rg~LL~GPpGtGKT 267 (473)
.+|+++.+.++.|+.+++.+..++.. ++.++. .| .|..+.+|+|||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 68999999999999999999988854 345555 22 233344999999999999
Q ss_pred HHHHHHHHhc---CCceEEccccc----------------cc------CchHHHHHHHHh--ccCceEEEeccccccccc
Q 012016 268 SLIAAMANYL---NFDVYDLELTE----------------LR------SNSDLRTLLVAT--ANRSILVVEDIDCTIDLQ 320 (473)
Q Consensus 268 ~la~alA~~l---~~~~~~l~~~~----------------~~------~~~~l~~l~~~~--~~~sIL~iDdiD~l~~~~ 320 (473)
.|+.++|.+. +-+...++... +. ++..++.++..+ ..+++|++|++|++.+.+
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 9999999876 34444443332 11 234555555433 368999999999998732
Q ss_pred cCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCC
Q 012016 321 DRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHK 369 (473)
Q Consensus 321 ~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 369 (473)
.-.+ ... +.......+.++++|..|+++... .+++|| +||+.
T Consensus 1177 ~~~g-~~~---~~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEG-EIG---DSHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQI 1218 (1706)
T ss_dssp HHHS-CTT---CCCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEECE
T ss_pred cccc-ccc---cccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eeccc
Confidence 2100 000 011133456799999999997554 235555 77765
No 92
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.83 E-value=5e-08 Score=97.09 Aligned_cols=174 Identities=18% Similarity=0.139 Sum_probs=99.2
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc-----c
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL-----R 290 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~-----~ 290 (473)
...+.++|.++..+.+.+ + .. +.++++||+|+|||+|++.+++.++.+++.+++... .
T Consensus 10 ~~~~~~~gR~~el~~L~~-l----~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-L----RA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-T----CS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCHHHhcChHHHHHHHHH-h----cC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 345677887655555433 2 21 489999999999999999999998776666665432 0
Q ss_pred C-----------------------------------------------chHHHHHHH---Hhc-cCceEEEecccccccc
Q 012016 291 S-----------------------------------------------NSDLRTLLV---ATA-NRSILVVEDIDCTIDL 319 (473)
Q Consensus 291 ~-----------------------------------------------~~~l~~l~~---~~~-~~sIL~iDdiD~l~~~ 319 (473)
+ ...+..++. ... .+.+|+|||++.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 0 112233332 222 3789999999987420
Q ss_pred ccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCC---------CccccCCCceeeEEEeCC
Q 012016 320 QDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKL---------DPALLRPGRMDVHVHMSY 390 (473)
Q Consensus 320 ~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~l---------d~aLlrpgRfd~~I~~~~ 390 (473)
........+..+. +.. .++.+|+|+.....+ ...+ .||+...|+++.
T Consensus 153 --------------~~~~~~~~l~~~~---~~~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~ 208 (357)
T 2fna_A 153 --------------RGVNLLPALAYAY---DNL-----KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKP 208 (357)
T ss_dssp --------------TTCCCHHHHHHHH---HHC-----TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECC
T ss_pred --------------CchhHHHHHHHHH---HcC-----CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCC
Confidence 0011122233332 221 235666666543211 1112 247777899999
Q ss_pred CCHHHHHHHHHHHhCccccCCHHHHHHHHhcCCCCHHHHHH
Q 012016 391 CTPSGFKLLAANYLGIKEHILFEEIEELISTTQVTPAEVAE 431 (473)
Q Consensus 391 p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~t~a~i~~ 431 (473)
.+.++..+++...+........+ ...+...++-.|.-+..
T Consensus 209 l~~~e~~~~l~~~~~~~~~~~~~-~~~i~~~t~G~P~~l~~ 248 (357)
T 2fna_A 209 FSREEAIEFLRRGFQEADIDFKD-YEVVYEKIGGIPGWLTY 248 (357)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCC-HHHHHHHHCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHhCCCHHHHHH
Confidence 99999999998765321111111 14444545556654433
No 93
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.83 E-value=3e-09 Score=105.30 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=66.5
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc--cc----cc-C-chHHHHHHHHhccCceEEEeccccccccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL--TE----LR-S-NSDLRTLLVATANRSILVVEDIDCTIDLQ 320 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~--~~----~~-~-~~~l~~l~~~~~~~sIL~iDdiD~l~~~~ 320 (473)
|.+..+.++|+||||||||+|+.++|...+.++..++. .+ .. + +..+..+.....+..+||||+++.+....
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAA 198 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC---
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccc
Confidence 44556678999999999999999999876655444444 11 11 1 12222333333332399999999885411
Q ss_pred cCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccc
Q 012016 321 DRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPAL 376 (473)
Q Consensus 321 ~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aL 376 (473)
.. . .......+.+.+++..|+++... .++.+|++|| +...|+++
T Consensus 199 ~~--~-------s~~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 199 GG--N-------TTSGGISRGAFDLLSDIGAMAAS--RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHH--HTCEEEEECC-CSSCSSSH
T ss_pred cc--c-------cccchHHHHHHHHHHHHHHHHhh--CCCEEEEEeC-CcccchhH
Confidence 10 0 00111234566666666655433 2367888888 56666664
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.80 E-value=5.9e-07 Score=89.09 Aligned_cols=179 Identities=20% Similarity=0.149 Sum_probs=102.6
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccccc----
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELR---- 290 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~---- 290 (473)
+..-+.++|.++..+.+.+.+.. | +.++++||+|+|||+|++.+++.++ .+.+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 34556788877766666554321 1 5899999999999999999999886 4444433210
Q ss_pred --C------------------------------------chHHHHHH---HHh---ccCceEEEeccccccccccCCccc
Q 012016 291 --S------------------------------------NSDLRTLL---VAT---ANRSILVVEDIDCTIDLQDRLPAD 326 (473)
Q Consensus 291 --~------------------------------------~~~l~~l~---~~~---~~~sIL~iDdiD~l~~~~~r~~~~ 326 (473)
+ ...+..++ ... ..+.+|+|||++.+....
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~------ 144 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG------ 144 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT------
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC------
Confidence 0 01122222 221 138899999999874200
Q ss_pred cCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCC---C------CCccccCCCceeeEEEeCCCCHHHHH
Q 012016 327 IAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKE---K------LDPALLRPGRMDVHVHMSYCTPSGFK 397 (473)
Q Consensus 327 ~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~---~------ld~aLlrpgRfd~~I~~~~p~~~~r~ 397 (473)
.......+..|-..++.. .++.+|+|+.... . ....+. ||+...++++..+.++..
T Consensus 145 --------~~~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~ 209 (350)
T 2qen_A 145 --------SRGGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSV 209 (350)
T ss_dssp --------TTTTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHH
T ss_pred --------ccchhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHH
Confidence 001122333333333321 2355666654321 1 111222 476678999999999999
Q ss_pred HHHHHHhCcccc-CCHHHHHHHHhcCCCCHHHHHH
Q 012016 398 LLAANYLGIKEH-ILFEEIEELISTTQVTPAEVAE 431 (473)
Q Consensus 398 ~l~~~~l~~~~~-~l~~~i~~l~~~~~~t~a~i~~ 431 (473)
+++...+..... ...+.+..+...++-.|.-+..
T Consensus 210 ~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~ 244 (350)
T 2qen_A 210 EFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVV 244 (350)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 998876543222 2344555666656666664443
No 95
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.80 E-value=5e-09 Score=97.32 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=77.2
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh--------cC-CceEEcccccccC---------------------chHHHHHHH-Hh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY--------LN-FDVYDLELTELRS---------------------NSDLRTLLV-AT 302 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~--------l~-~~~~~l~~~~~~~---------------------~~~l~~l~~-~~ 302 (473)
--+|++|+||||||+++.+++.. .| .+++..++..+.- ...+.+.+. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 36899999999999998886543 34 6776555443310 022222211 12
Q ss_pred ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCce
Q 012016 303 ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRM 382 (473)
Q Consensus 303 ~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRf 382 (473)
..++||||||++.+++.+.. ..+.. .++..+.. ......-||++|+.++.|+.+++. |+
T Consensus 86 ~~~~vliIDEAq~l~~~~~~------------~~e~~----rll~~l~~---~r~~~~~iil~tq~~~~l~~~lr~--ri 144 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSA------------GSKIP----ENVQWLNT---HRHQGIDIFVLTQGPKLLDQNLRT--LV 144 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCT------------TCCCC----HHHHGGGG---TTTTTCEEEEEESCGGGBCHHHHT--TE
T ss_pred cCceEEEEEChhhhccCccc------------cchhH----HHHHHHHh---cCcCCeEEEEECCCHHHHhHHHHH--Hh
Confidence 34899999999998652110 00011 24444443 222346788889889999999988 99
Q ss_pred eeEEEeCCCCHHH
Q 012016 383 DVHVHMSYCTPSG 395 (473)
Q Consensus 383 d~~I~~~~p~~~~ 395 (473)
+.+++++.|....
T Consensus 145 ~~~~~l~~~~~~~ 157 (199)
T 2r2a_A 145 RKHYHIASNKMGM 157 (199)
T ss_dssp EEEEEEEECSSCC
T ss_pred heEEEEcCcccCc
Confidence 9999998865443
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.74 E-value=4.9e-08 Score=94.24 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=39.9
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHHHhccCceEEEeccccc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVATANRSILVVEDIDCT 316 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIL~iDdiD~l 316 (473)
+++++++||||||||||+++.|||+.++.- -.++.+.. ...+.....+.|+++||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~-G~vn~~~~------~f~l~~~~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTNE------NFPFNDCVDKMVIWWEEGKMT 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTCS------SCTTGGGSSCSEEEECSCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhccc-ceeecccc------ccccccccccEEEEeccccch
Confidence 446789999999999999999999987552 22233211 112344456677777777644
No 97
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.71 E-value=5.8e-08 Score=118.96 Aligned_cols=129 Identities=17% Similarity=0.171 Sum_probs=94.9
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHHHhc-cCceEEEeccccccccccCCccccCCCC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVATA-NRSILVVEDIDCTIDLQDRLPADIAGEG 331 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~-~~sIL~iDdiD~l~~~~~r~~~~~~~~~ 331 (473)
..|.+++||+|||||++++++|+.+|.+++.++|++-.+...+.++|..+. .++++++||++.+-.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~------------- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE------------- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh-------------
Confidence 458999999999999999999999999999999998878888888887765 589999999997632
Q ss_pred CCCccchhHHHHHHH----HHhc---------ccccCCCCceEEEEecC----CCCCCCccccCCCceeeEEEeCCCCHH
Q 012016 332 EGPIQQNKVTLSGFL----NFID---------GLWSSCGDERIIVFTTN----HKEKLDPALLRPGRMDVHVHMSYCTPS 394 (473)
Q Consensus 332 ~~~~~~~~~~ls~LL----~~ld---------g~~~~~~~~~iiI~tTN----~~~~ld~aLlrpgRfd~~I~~~~p~~~ 394 (473)
.....+++.+ +.+. |-.-.......|++|.| ....|+++|.+ || +.|.|.+|+.+
T Consensus 712 -----evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 712 -----KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 1122222222 2221 10001112345778888 34578999998 88 68999999999
Q ss_pred HHHHHHHH
Q 012016 395 GFKLLAAN 402 (473)
Q Consensus 395 ~r~~l~~~ 402 (473)
...++...
T Consensus 784 ~i~ei~l~ 791 (2695)
T 4akg_A 784 TIAEMILQ 791 (2695)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777543
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.63 E-value=1.7e-07 Score=115.51 Aligned_cols=137 Identities=18% Similarity=0.333 Sum_probs=92.2
Q ss_pred CceeEEeCCCCCCHHHHHHH-HHHhcCCceEEcccccccCchHHHHHHHHh------------------ccCceEEEecc
Q 012016 253 KRGYLLYGPPGTGKSSLIAA-MANYLNFDVYDLELTELRSNSDLRTLLVAT------------------ANRSILVVEDI 313 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~a-lA~~l~~~~~~l~~~~~~~~~~l~~l~~~~------------------~~~sIL~iDdi 313 (473)
.+.+||+||||||||++++. +++..+.+++.++++.-.+...+...+... .++.|+||||+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 45799999999999988765 444457788899998877777777777531 11259999999
Q ss_pred ccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCC------CceEEEEecCCCC-----CCCccccCCCce
Q 012016 314 DCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCG------DERIIVFTTNHKE-----KLDPALLRPGRM 382 (473)
Q Consensus 314 D~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~------~~~iiI~tTN~~~-----~ld~aLlrpgRf 382 (473)
+.-.. + ..+....-..+.+++.. .|.+.... .++.+|+|.|.|. .|+|+++| ||
T Consensus 1384 Nmp~~--D----------~yGtQ~~ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F 1448 (3245)
T 3vkg_A 1384 NLPST--D----------KYGTQRVITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA 1448 (3245)
T ss_dssp TCCCC--C----------TTSCCHHHHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC
T ss_pred CCCCc--c----------ccccccHHHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc
Confidence 84311 0 01111222333333322 12222111 3467899999883 58999999 99
Q ss_pred eeEEEeCCCCHHHHHHHHHHHhC
Q 012016 383 DVHVHMSYCTPSGFKLLAANYLG 405 (473)
Q Consensus 383 d~~I~~~~p~~~~r~~l~~~~l~ 405 (473)
. .+.+++|+.++...|+..++.
T Consensus 1449 ~-vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1449 P-ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp C-EEECCCCCHHHHHHHHHHHHH
T ss_pred e-EEEeCCCCHHHHHHHHHHHHH
Confidence 6 599999999999999876653
No 99
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.53 E-value=4.5e-07 Score=92.65 Aligned_cols=153 Identities=16% Similarity=0.227 Sum_probs=93.9
Q ss_pred cccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC---CceEEcccccccCchHH
Q 012016 219 ETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELTELRSNSDL 295 (473)
Q Consensus 219 ~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~---~~~~~l~~~~~~~~~~l 295 (473)
+.+++.....+.+.+.+.... +....+||+|++||||+++++++....+ .+++.++|+.+..+---
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 445666555666655555422 1235689999999999999999998764 68999999886322111
Q ss_pred HHHHH-----------------HhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhccc--ccCC
Q 012016 296 RTLLV-----------------ATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGL--WSSC 356 (473)
Q Consensus 296 ~~l~~-----------------~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~--~~~~ 356 (473)
.++|. ...++++||||||+.+. ......||..++.- ..-+
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~---------------------~~~q~~Ll~~l~~~~~~~~g 264 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELS---------------------LEAQAKLLRVIESGKFYRLG 264 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCC---------------------HHHHHHHHHHHHHSEECCBT
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCC---------------------HHHHHHHHHHHhcCcEEeCC
Confidence 12221 22356899999999873 34555666666531 1001
Q ss_pred C-----CceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHHhC
Q 012016 357 G-----DERIIVFTTNHK-------EKLDPALLRPGRMD-VHVHMSYCTP--SGFKLLAANYLG 405 (473)
Q Consensus 357 ~-----~~~iiI~tTN~~-------~~ld~aLlrpgRfd-~~I~~~~p~~--~~r~~l~~~~l~ 405 (473)
+ .++.||+|||.. ..+.+.|.. |+. ..|++|.... +....|+..|+.
T Consensus 265 ~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 326 (387)
T 1ny5_A 265 GRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLK 326 (387)
T ss_dssp CCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred CCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHH
Confidence 1 235688888863 334445543 443 4566666432 556677777764
No 100
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.51 E-value=6.8e-07 Score=90.69 Aligned_cols=152 Identities=17% Similarity=0.229 Sum_probs=94.7
Q ss_pred ccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCc--eEEcccccccCchHHHH
Q 012016 220 TLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD--VYDLELTELRSNSDLRT 297 (473)
Q Consensus 220 ~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~--~~~l~~~~~~~~~~l~~ 297 (473)
.+++......++...+...-. ....+|++|++||||+.+++++....+.. ++.++|..+..+.--.+
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 456666555555554443221 13469999999999999999999887543 99999998743322223
Q ss_pred HH-----------------HHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc-c-CCC-
Q 012016 298 LL-----------------VATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW-S-SCG- 357 (473)
Q Consensus 298 l~-----------------~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~-~~~- 357 (473)
+| ....+++.||||||+.+. ......||..++.-. . -++
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~---------------------~~~Q~~Ll~~l~~~~~~~~g~~ 257 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELD---------------------QRVQAKLLRVLETGSFTRLGGN 257 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSC---------------------HHHHHHHHHHHHHSEECCBTCC
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhCC---------------------HHHHHHHHHHHHhCCcccCCCC
Confidence 32 122356789999999883 345566777775311 1 111
Q ss_pred ----CceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHHhC
Q 012016 358 ----DERIIVFTTNHK-------EKLDPALLRPGRMD-VHVHMSYCTP--SGFKLLAANYLG 405 (473)
Q Consensus 358 ----~~~iiI~tTN~~-------~~ld~aLlrpgRfd-~~I~~~~p~~--~~r~~l~~~~l~ 405 (473)
-.+-+|++||.. ..+.+.|.. |+. ..|++|.... +....|+.+|+.
T Consensus 258 ~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 258 QKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp CBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 134577877753 233444544 443 3577777655 667777777764
No 101
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.50 E-value=7.7e-08 Score=99.47 Aligned_cols=143 Identities=17% Similarity=0.115 Sum_probs=84.2
Q ss_pred cccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHH-HHhcCCceEEccccc----ccCc---
Q 012016 221 LAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAM-ANYLNFDVYDLELTE----LRSN--- 292 (473)
Q Consensus 221 l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~al-A~~l~~~~~~l~~~~----~~~~--- 292 (473)
|.|++.+|+.|.-.+. .+... ..-.-++||.|+||| ||.|++++ ++.+....|...... +...
T Consensus 215 I~G~e~vK~aLll~L~---GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF---SCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHT---TCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHc---CCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 7788887776644332 11000 011226999999999 99999999 887765554322111 0000
Q ss_pred ---hHHHHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccc-c----CCCCceEEEE
Q 012016 293 ---SDLRTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLW-S----SCGDERIIVF 364 (473)
Q Consensus 293 ---~~l~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~----~~~~~~iiI~ 364 (473)
..++.-....+...|+|||||+.+ ...+.+.|+..|+.-. + .-+....||+
T Consensus 286 ~tG~~~~~G~l~LAdgGvl~lDEIn~~---------------------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIA 344 (506)
T 3f8t_A 286 DRGWALRAGAAVLADGGILAVDHLEGA---------------------PEPHRWALMEAMDKGTVTVDGIALNARCAVLA 344 (506)
T ss_dssp SSSEEEEECHHHHTTTSEEEEECCTTC---------------------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEE
T ss_pred CCCcccCCCeeEEcCCCeeehHhhhhC---------------------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEE
Confidence 000000112346799999999876 3567778888876311 0 1123578999
Q ss_pred ecCCCC-----------CCCccccCCCceeeEE-EeCCCCHHH
Q 012016 365 TTNHKE-----------KLDPALLRPGRMDVHV-HMSYCTPSG 395 (473)
Q Consensus 365 tTN~~~-----------~ld~aLlrpgRfd~~I-~~~~p~~~~ 395 (473)
|+|..+ .|+++++. |||..+ .+++|+.+.
T Consensus 345 A~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 345 AINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp EECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred EeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 999875 78899999 998754 456666543
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.39 E-value=1.4e-06 Score=107.77 Aligned_cols=129 Identities=19% Similarity=0.134 Sum_probs=95.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHHHhc-cCceEEEeccccccccccCCccccCCCC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVATA-NRSILVVEDIDCTIDLQDRLPADIAGEG 331 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~-~~sIL~iDdiD~l~~~~~r~~~~~~~~~ 331 (473)
..|..+.||+|||||.+++.+|+.+|.+++.++|++-.+...+.++|..+. .++..++||++.+-
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~-------------- 669 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLE-------------- 669 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSC--------------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCC--------------
Confidence 346789999999999999999999999999999998777777888887765 68999999998762
Q ss_pred CCCccchhHHHHHHHHHhc-----------------ccccCCCCceEEEEecCC----CCCCCccccCCCceeeEEEeCC
Q 012016 332 EGPIQQNKVTLSGFLNFID-----------------GLWSSCGDERIIVFTTNH----KEKLDPALLRPGRMDVHVHMSY 390 (473)
Q Consensus 332 ~~~~~~~~~~ls~LL~~ld-----------------g~~~~~~~~~iiI~tTN~----~~~ld~aLlrpgRfd~~I~~~~ 390 (473)
..+++.+...|. |-.-.-....-|++|.|. ...|+++|.. || +.|.|++
T Consensus 670 -------~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~ 739 (3245)
T 3vkg_A 670 -------ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIK 739 (3245)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCS
T ss_pred -------HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeC
Confidence 233333333221 210011123567788883 3689999998 88 6799999
Q ss_pred CCHHHHHHHHHHHhC
Q 012016 391 CTPSGFKLLAANYLG 405 (473)
Q Consensus 391 p~~~~r~~l~~~~l~ 405 (473)
|+.+...++.-.-.+
T Consensus 740 Pd~~~i~ei~L~s~G 754 (3245)
T 3vkg_A 740 PDREMIAQVMLYSQG 754 (3245)
T ss_dssp CCHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHcc
Confidence 999998877654444
No 103
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.21 E-value=8e-06 Score=81.55 Aligned_cols=122 Identities=17% Similarity=0.181 Sum_probs=82.6
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc---CC-c--eEEcccccccCchHHHHHHHHh------ccCceEEEecccc-ccc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL---NF-D--VYDLELTELRSNSDLRTLLVAT------ANRSILVVEDIDC-TID 318 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l---~~-~--~~~l~~~~~~~~~~l~~l~~~~------~~~sIL~iDdiD~-l~~ 318 (473)
....||||||+|+||++.++++++.+ +. + ++.++ .+..+++++..+ ..+-|++|||++. +.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~- 90 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-----PNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN- 90 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-----TTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC-
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-----CCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC-
Confidence 35689999999999999999998876 33 2 23333 123455555443 2568999999986 52
Q ss_pred cccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCC------CCCCccccCCCceeeEEEeCCCC
Q 012016 319 LQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHK------EKLDPALLRPGRMDVHVHMSYCT 392 (473)
Q Consensus 319 ~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~------~~ld~aLlrpgRfd~~I~~~~p~ 392 (473)
....+.|+..++.. ++..++|++|+.+ .++.+++.. |+ .+++|..++
T Consensus 91 --------------------~~~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~ 143 (343)
T 1jr3_D 91 --------------------AAINEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPE 143 (343)
T ss_dssp --------------------TTHHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCC
T ss_pred --------------------hHHHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCC
Confidence 23456677777753 2346666655543 346677776 65 578999999
Q ss_pred HHHHHHHHHHHhCc
Q 012016 393 PSGFKLLAANYLGI 406 (473)
Q Consensus 393 ~~~r~~l~~~~l~~ 406 (473)
..+....+...+..
T Consensus 144 ~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 144 QAQLPRWVAARAKQ 157 (343)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 98888777776643
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.19 E-value=2.5e-06 Score=101.74 Aligned_cols=114 Identities=13% Similarity=0.163 Sum_probs=69.6
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc---------------------CchHHHHHHHHh--
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR---------------------SNSDLRTLLVAT-- 302 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~---------------------~~~~l~~l~~~~-- 302 (473)
|++.+++++||||||||||+|+.++|.+. |..+..++..... ..+.+.+.+...
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 37778899999999999999999998775 4555555544321 112233333333
Q ss_pred -ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCC
Q 012016 303 -ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHK 369 (473)
Q Consensus 303 -~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 369 (473)
..+++||||+++.+.+...... .+. +.......+.++++|..|++..... .++|++||..
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g-~~~---~~~~~~~~R~lsqlL~~L~~~~~~~---~v~VI~tNq~ 1563 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEG-EIG---DSHMGLAARMMSQAMRKLAGNLKQS---NTLLIFINQI 1563 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHS-CTT---CCCTTHHHHHHHHHHHHHHHHHHTT---TCEEEEEECE
T ss_pred cCCCCEEEEcChhHhcccccccc-ccc---ccccchHHHHHHHHHHHHHHHHHhC---CcEEEEEccc
Confidence 5789999999998875211000 000 0011113567788888888876543 3455555543
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.15 E-value=7e-06 Score=74.51 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=23.4
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCce
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDV 281 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~ 281 (473)
.+.|.||+|+|||||++.|++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999886443
No 106
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.79 E-value=0.00027 Score=75.48 Aligned_cols=51 Identities=24% Similarity=0.198 Sum_probs=35.0
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHh
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
|.....++|-+...+.|.+.+. .. ....+-++|+||+|+|||+||..+++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~----~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLS----KL-------KGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHT----TS-------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCCCeecccHHHHHHHHHHHh----cc-------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 3445668887777666655432 11 112457999999999999999998753
No 107
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.76 E-value=9.3e-05 Score=68.25 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=31.5
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTE 288 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~ 288 (473)
|.+...-++|+||||+|||+|+..+|...+.+++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4566667999999999999999999985566666665543
No 108
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.71 E-value=0.00013 Score=75.88 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=34.8
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 212 LDHPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 212 ~~~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
...|.+|++| .+++++.+ ..+..++... .+.++|.||||||||+++.+++..+
T Consensus 17 ~~~p~~~~~L--n~~Q~~av-~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 17 RGSHMTFDDL--TEGQKNAF-NIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ----CCSSCC--CHHHHHHH-HHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCccccC--CHHHHHHH-HHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4566788887 34444443 3344444431 2379999999999999999999887
No 109
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.69 E-value=4.8e-05 Score=67.33 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=29.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
-++|.||||+||||+++.|+..+++++++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 57899999999999999999999999987764
No 110
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.69 E-value=2.3e-05 Score=70.64 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=30.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
++.++|.||||||||++++.+|..+++++++.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 4579999999999999999999999999987653
No 111
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.65 E-value=0.00016 Score=67.73 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=24.4
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHh
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
|++...-++|+||||+|||+|+..+|..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4566667999999999999999999984
No 112
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.62 E-value=3.1e-05 Score=69.25 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=30.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELT 287 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~ 287 (473)
+.-++|.||||+||||++++++..++.+++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 35689999999999999999999999988876644
No 113
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.61 E-value=3.5e-05 Score=70.69 Aligned_cols=33 Identities=36% Similarity=0.423 Sum_probs=30.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
...++|.||||+||||++++||..+++++++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 457999999999999999999999999988765
No 114
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.59 E-value=3.4e-05 Score=69.77 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=29.9
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
+.+.-++|.||||+||||+++.++..++++++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 3456799999999999999999999999888764
No 115
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.58 E-value=0.00022 Score=71.67 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=46.4
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc---------------------CchHHHHHHHH---
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR---------------------SNSDLRTLLVA--- 301 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~---------------------~~~~l~~l~~~--- 301 (473)
|++...-++|+||||+|||+|+..+|..+ +.+++.++..... +...+...+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45666679999999999999999999875 5566555544321 11122222222
Q ss_pred hccCceEEEeccccccc
Q 012016 302 TANRSILVVEDIDCTID 318 (473)
Q Consensus 302 ~~~~sIL~iDdiD~l~~ 318 (473)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 24578999999988763
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.58 E-value=0.00034 Score=64.75 Aligned_cols=29 Identities=28% Similarity=0.201 Sum_probs=24.3
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
|.+....++|+||||+|||+|++.+|..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35556679999999999999999999654
No 117
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.55 E-value=0.00097 Score=76.93 Aligned_cols=164 Identities=18% Similarity=0.187 Sum_probs=92.0
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---C--C--ceEEccc
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---N--F--DVYDLEL 286 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~--~--~~~~l~~ 286 (473)
.|.....++|.++..++|.+.+.. .. ...+-+.|+|++|+|||+||+.+++.. . + .++.++.
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~----~~-------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWK----LN-------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHT----TT-------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhh----cc-------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 455667788988777776665431 11 124568999999999999999988762 1 2 2334443
Q ss_pred cccc---------------------------CchHHHHHHHHh----ccCceEEEeccccccccccCCccccCCCCCCCc
Q 012016 287 TELR---------------------------SNSDLRTLLVAT----ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPI 335 (473)
Q Consensus 287 ~~~~---------------------------~~~~l~~l~~~~----~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~ 335 (473)
+... ....+...+... .++.+|||||++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------ 249 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------ 249 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH------------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH------------------
Confidence 3210 011222222211 237899999997431
Q ss_pred cchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC-CCHHHHHHHHHHHhCccccCCHHH
Q 012016 336 QQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVHMSY-CTPSGFKLLAANYLGIKEHILFEE 414 (473)
Q Consensus 336 ~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgRfd~~I~~~~-p~~~~r~~l~~~~l~~~~~~l~~~ 414 (473)
.++.+ +.+.-||+||..+...... . .....+.++. .+.++-.+|+..+.......+.+.
T Consensus 250 ------------~~~~~----~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~ 309 (1249)
T 3sfz_A 250 ------------VLKAF----DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAE 309 (1249)
T ss_dssp ------------HHTTT----CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTH
T ss_pred ------------HHHhh----cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHH
Confidence 01111 1234566777655433211 1 1234577775 888888888887775443333344
Q ss_pred HHHHHhcCCCCH
Q 012016 415 IEELISTTQVTP 426 (473)
Q Consensus 415 i~~l~~~~~~t~ 426 (473)
..++++..+.-|
T Consensus 310 ~~~i~~~~~glP 321 (1249)
T 3sfz_A 310 AHSIIKECKGSP 321 (1249)
T ss_dssp HHHHHHHTTTCH
T ss_pred HHHHHHHhCCCH
Confidence 555555554444
No 118
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.53 E-value=0.00017 Score=72.56 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=48.4
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc---------------------CchHHHHHHHH---
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR---------------------SNSDLRTLLVA--- 301 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~---------------------~~~~l~~l~~~--- 301 (473)
|.+..+.++|+||||+|||+|+..+|..+ +.+++.++..... +...+.+++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56667789999999999999999888764 5667666653211 11223333332
Q ss_pred hccCceEEEeccccccc
Q 012016 302 TANRSILVVEDIDCTID 318 (473)
Q Consensus 302 ~~~~sIL~iDdiD~l~~ 318 (473)
.....+||||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 24678999999998863
No 119
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.51 E-value=8.3e-05 Score=73.80 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=31.4
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---------CCceEEccccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELTE 288 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---------~~~~~~l~~~~ 288 (473)
|.+...-++|+||||+|||+|+..+|... +..+++++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56666779999999999999999998764 45666666543
No 120
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.49 E-value=4.2e-05 Score=69.64 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=22.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc---CCceEE
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYD 283 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l---~~~~~~ 283 (473)
.-++++||||+|||+++..++..+ +..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~ 36 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAV 36 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 357899999999999986666543 555543
No 121
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.49 E-value=5.7e-05 Score=67.58 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=28.4
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.++|.||||+|||+++++||..+++++++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5899999999999999999999999988754
No 122
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.48 E-value=6.1e-05 Score=67.82 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=29.2
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
..++|.|+||+|||++++.||..+|+++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35899999999999999999999999988765
No 123
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.48 E-value=6.2e-05 Score=67.57 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=29.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
++.++|.||||+|||++++++|..+++++++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 456999999999999999999999999887654
No 124
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.48 E-value=6.5e-05 Score=66.66 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=29.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
..++|.|+||||||++++.||..+|+++++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47999999999999999999999999998765
No 125
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.47 E-value=7.4e-05 Score=66.39 Aligned_cols=32 Identities=41% Similarity=0.717 Sum_probs=28.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
..+.|.||||+||||+++.||..++.++++.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d 36 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEecc
Confidence 46899999999999999999999998777643
No 126
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.46 E-value=0.00037 Score=70.39 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=47.0
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc---------------------CchHHHHHHHHh--
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR---------------------SNSDLRTLLVAT-- 302 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~---------------------~~~~l~~l~~~~-- 302 (473)
|.+..+.++|+||||+|||+|+..+|..+ +.+++.+++.... +...+...+...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56667779999999999999999888764 5566666544321 112233333322
Q ss_pred -ccCceEEEecccccc
Q 012016 303 -ANRSILVVEDIDCTI 317 (473)
Q Consensus 303 -~~~sIL~iDdiD~l~ 317 (473)
....+||||.+..+.
T Consensus 150 ~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALT 165 (366)
T ss_dssp TTCCSEEEEECTTTCC
T ss_pred cCCCCEEEEeChHHhc
Confidence 357899999999886
No 127
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.45 E-value=0.00038 Score=65.34 Aligned_cols=26 Identities=35% Similarity=0.426 Sum_probs=22.5
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHH
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMA 274 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA 274 (473)
|++...-+.|.||+|+|||+|++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 44556679999999999999999998
No 128
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.45 E-value=0.00022 Score=71.63 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=45.6
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccccc---------------------CchHHHHHHHH---
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELR---------------------SNSDLRTLLVA--- 301 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~---------------------~~~~l~~l~~~--- 301 (473)
|.+..+-++|+||||+|||+|+..+|..+ +..+..++..... +...+..++..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 55666779999999999999999888654 4555555543211 11122222222
Q ss_pred hccCceEEEecccccc
Q 012016 302 TANRSILVVEDIDCTI 317 (473)
Q Consensus 302 ~~~~sIL~iDdiD~l~ 317 (473)
...+.+||||++..+.
T Consensus 137 ~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 137 SGALDIIVIDSVAALV 152 (349)
T ss_dssp TTCCSEEEEECGGGCC
T ss_pred cCCCCEEEEcChHhhc
Confidence 2358999999999886
No 129
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.45 E-value=7.9e-05 Score=67.43 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=29.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHh-cCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANY-LNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~-l~~~~~~l~ 285 (473)
+..++|.|+||||||++++.+|.. +|+++++++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 346999999999999999999999 798888765
No 130
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.43 E-value=0.00031 Score=70.31 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=30.7
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---------CCceEEccccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELTE 288 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---------~~~~~~l~~~~ 288 (473)
|.+...-++|+||||+|||+|+..+|... +..+++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 55666679999999999999999998862 45666665543
No 131
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.42 E-value=0.00025 Score=84.85 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=52.0
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccccCc------------------------hHHHHHHHH
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTELRSN------------------------SDLRTLLVA 301 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~~~~------------------------~~l~~l~~~ 301 (473)
|.+..+.++|+||||||||+|+.+++.+. |.+.+.+++...... ..+.+.+..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46778889999999999999999988754 677777776654211 122334444
Q ss_pred hccCceEEEeccccccc
Q 012016 302 TANRSILVVEDIDCTID 318 (473)
Q Consensus 302 ~~~~sIL~iDdiD~l~~ 318 (473)
...+.+||||++..+.+
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 56799999999999854
No 132
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.38 E-value=0.0004 Score=74.31 Aligned_cols=64 Identities=30% Similarity=0.371 Sum_probs=41.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccc----------cCchHHHHHHHHhc-----------cCceE
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTEL----------RSNSDLRTLLVATA-----------NRSIL 308 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~----------~~~~~l~~l~~~~~-----------~~sIL 308 (473)
.+.+++.||||||||+++.+++..+ +.++..+..+.. .....+..++.... ...+|
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 3578999999999999999999865 666665533321 01223344432111 34799
Q ss_pred EEeccccc
Q 012016 309 VVEDIDCT 316 (473)
Q Consensus 309 ~iDdiD~l 316 (473)
+|||+..+
T Consensus 284 IIDEasml 291 (574)
T 3e1s_A 284 IVDEVSMM 291 (574)
T ss_dssp EECCGGGC
T ss_pred EEcCccCC
Confidence 99999755
No 133
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.37 E-value=9.7e-05 Score=65.55 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=28.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
..++|.|+||+|||++++.+|..+++++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35899999999999999999999999988755
No 134
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.35 E-value=0.00045 Score=66.72 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=23.9
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
|.+...-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44455679999999999999999998644
No 135
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.34 E-value=0.00014 Score=66.44 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=29.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
+..++|.||||+||||+++.|+..+++++++++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 346899999999999999999999999988764
No 136
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.33 E-value=0.00013 Score=69.78 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=29.8
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELT 287 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~ 287 (473)
-++|.||||||||+++++||..++.+++..|.-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999999887753
No 137
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.32 E-value=0.00013 Score=64.21 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=27.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
-++|.||||+||||+++.+ ..+|++++.++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~ 32 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVMS 32 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEHh
Confidence 5889999999999999999 99999988753
No 138
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.31 E-value=0.00013 Score=65.82 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=28.9
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
+.-++|.|+||+||||+++.++..+++++++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 35 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAG 35 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence 346899999999999999999999999887654
No 139
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.29 E-value=0.00075 Score=63.33 Aligned_cols=61 Identities=26% Similarity=0.335 Sum_probs=42.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccc---------cc-----------------CchHHHHHHHHhcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTE---------LR-----------------SNSDLRTLLVATAN 304 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~---------~~-----------------~~~~l~~l~~~~~~ 304 (473)
-.+++.|+||+|||+++-.+|..+ |+++..++... +. .+..+..++. ..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~--~~ 84 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK--AA 84 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH--HC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh--cC
Confidence 469999999999999999999876 77766444321 11 1123444443 36
Q ss_pred CceEEEeccccc
Q 012016 305 RSILVVEDIDCT 316 (473)
Q Consensus 305 ~sIL~iDdiD~l 316 (473)
+.+++|||+-..
T Consensus 85 pdlvIVDElG~~ 96 (228)
T 2r8r_A 85 PSLVLVDELAHT 96 (228)
T ss_dssp CSEEEESCTTCB
T ss_pred CCEEEEeCCCCC
Confidence 889999998754
No 140
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.29 E-value=0.00017 Score=65.98 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
+.-++|.||||+||||+++.|+..+|+.+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 346999999999999999999999998887655
No 141
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.28 E-value=0.00011 Score=65.38 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=26.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHH-hcCCceEEc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMAN-YLNFDVYDL 284 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~-~l~~~~~~l 284 (473)
+.-++|.||||+||||+++.++. .+++.++..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecH
Confidence 34689999999999999999999 677665543
No 142
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.28 E-value=0.00014 Score=65.41 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=29.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
+.-++|.|+||+|||++++.++..+++++++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 457999999999999999999999998888764
No 143
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.28 E-value=0.00013 Score=65.66 Aligned_cols=32 Identities=28% Similarity=0.587 Sum_probs=28.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
..++|.||||+||||+++.+|..+++++++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d 36 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLSTG 36 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 35899999999999999999999998887654
No 144
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.27 E-value=0.00015 Score=65.62 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=29.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
+.-++|.||||+||||+++.+|..+++++++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 357999999999999999999999999888765
No 145
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.27 E-value=0.00015 Score=64.11 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=28.3
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.++|.|+||+|||++++.++..+++++++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4789999999999999999999999988755
No 146
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.26 E-value=0.00013 Score=67.71 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=28.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
..++|.||||+||||+++.||..++++++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 37 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLSTG 37 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEehh
Confidence 46899999999999999999999999888763
No 147
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.26 E-value=0.00037 Score=69.93 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.5
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
|++...-+.|+||||+|||+|+..+|...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56666679999999999999999999876
No 148
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.23 E-value=0.00016 Score=65.51 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=29.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
+.-++|.||||+||||+++.++..+++++++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 457999999999999999999999998887664
No 149
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.22 E-value=0.00019 Score=66.39 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=28.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.++|.||||+||||+++.||..++++++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 3789999999999999999999999888764
No 150
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.22 E-value=0.00016 Score=65.02 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=26.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC-----CceEE
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN-----FDVYD 283 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~-----~~~~~ 283 (473)
.-++|.||||+||||+++.|+..++ ++++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 4689999999999999999999987 66664
No 151
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.21 E-value=0.00021 Score=66.35 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=28.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
..++|.||||+||||+++.||..++++++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4689999999999999999999999988776
No 152
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.21 E-value=0.001 Score=65.63 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=42.9
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc-----CCceEEccccccc---------------------CchHH-HHHHHH
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELTELR---------------------SNSDL-RTLLVA 301 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l-----~~~~~~l~~~~~~---------------------~~~~l-~~l~~~ 301 (473)
|.+.. -++++||||+|||+|+..++... +..+.+++...-. +.+.+ ..++..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 58999999999999976555433 4556666543320 11222 222222
Q ss_pred h-----ccCceEEEeccccccc
Q 012016 302 T-----ANRSILVVEDIDCTID 318 (473)
Q Consensus 302 ~-----~~~sIL~iDdiD~l~~ 318 (473)
. ..+.+||||-|..+..
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2 3689999999999863
No 153
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.20 E-value=0.00018 Score=67.19 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=29.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
+.-++|.||||+||||+++.||..+++++++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSG 39 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEech
Confidence 456999999999999999999999999887653
No 154
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.20 E-value=0.00042 Score=67.52 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=27.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
+..++|.||||+||||+++.++..++...+.++.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 4569999999999999999999998444445554
No 155
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.20 E-value=0.00026 Score=63.04 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=28.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
...+.|.||||+|||++++.++..+|..+++.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d 40 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 40 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCc
Confidence 346899999999999999999999988777654
No 156
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.20 E-value=0.00019 Score=64.84 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=28.9
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
..+.-+.|.||||+||||++++|+..++...+.++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 345569999999999999999999987666555553
No 157
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.19 E-value=0.0014 Score=61.23 Aligned_cols=28 Identities=32% Similarity=0.378 Sum_probs=23.1
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHh
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
|.+...-++|+||||+|||+++..+|..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4566667999999999999998877654
No 158
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.18 E-value=0.0002 Score=66.09 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=27.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
++|.||||+||||+++.++..++++++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 789999999999999999999999888764
No 159
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.18 E-value=0.00043 Score=68.38 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.0
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHh
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
|.+...-++|+||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5566667999999999999999998865
No 160
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.16 E-value=0.00043 Score=66.00 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=30.7
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL 289 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~ 289 (473)
.+..++|.||||+|||++++.|+..++...+.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34579999999999999999999999865555555544
No 161
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.16 E-value=0.01 Score=62.99 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHH
Q 012016 223 MEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 223 ~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~ 275 (473)
|.++.+++|.+.+.. . +....+.+.|+|++|+|||+||+.+++
T Consensus 132 GR~~~~~~l~~~L~~----~------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 132 IREYHVDRVIKKLDE----M------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCHHHHHHHHHHHHH----H------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhc----c------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 777777777766532 1 111246789999999999999999997
No 162
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.14 E-value=0.00028 Score=64.43 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=28.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.-|+|.||||+|||++++.|++.+++++++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 45899999999999999999999999887765
No 163
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.13 E-value=0.00029 Score=66.15 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=28.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
..++|.|+||+||||+++.||..++++++..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 46999999999999999999999998887763
No 164
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.12 E-value=0.00019 Score=66.73 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=28.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
+..++|.||||+||||+++.||..++.+++++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45699999999999999999999999877654
No 165
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.11 E-value=0.00037 Score=63.77 Aligned_cols=32 Identities=19% Similarity=0.420 Sum_probs=27.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
+.-+.|.||+|+||||++++|+..+|..+++-
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~ 60 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAEA 60 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEEG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEcc
Confidence 45689999999999999999999998766654
No 166
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.10 E-value=0.00034 Score=62.65 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=30.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~ 287 (473)
+.-+.|.|++|+||||+++.++..+ |++++.++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 4468899999999999999999998 8888877643
No 167
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.07 E-value=0.00026 Score=63.36 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=23.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceE
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~ 282 (473)
.-++|.|+||+||||+++.++..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999999887
No 168
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.07 E-value=0.001 Score=67.94 Aligned_cols=27 Identities=33% Similarity=0.270 Sum_probs=22.6
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHH
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~ 275 (473)
|++...-++|+||||+|||+|+..+|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 556666799999999999999997763
No 169
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.05 E-value=0.00021 Score=71.62 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcCCceEE
Q 012016 225 QEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (473)
Q Consensus 225 ~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~~~ 283 (473)
+.+.+.+++.+..++...+ ...++|.||||+|||+++++||+.++++++.
T Consensus 5 ~~L~~~il~~l~~~i~~g~---------~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNY---------RVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCS---------CEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCC---------eeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 4455666665554443211 2469999999999999999999999988844
No 170
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.05 E-value=0.00072 Score=80.04 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=51.4
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHh---cCCceEEcccccccC---------------------chHHHHHHHHh--
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLELTELRS---------------------NSDLRTLLVAT-- 302 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~---l~~~~~~l~~~~~~~---------------------~~~l~~l~~~~-- 302 (473)
|++..+.++|+||||||||+|+.++|.. .|..+++++...... ...+.+++...
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~ 109 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 109 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh
Confidence 6777889999999999999999998875 367777777655311 22334444333
Q ss_pred -ccCceEEEeccccccc
Q 012016 303 -ANRSILVVEDIDCTID 318 (473)
Q Consensus 303 -~~~sIL~iDdiD~l~~ 318 (473)
..+.+||||++..+..
T Consensus 110 ~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 110 SGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 4688999999998865
No 171
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.04 E-value=0.00039 Score=65.92 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=29.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
+.-++|.||||+||||+++.|++.++++++..+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 457999999999999999999999999888664
No 172
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.01 E-value=0.0017 Score=67.33 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=57.0
Q ss_pred CceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCC-------------CCC
Q 012016 305 RSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNH-------------KEK 371 (473)
Q Consensus 305 ~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~-------------~~~ 371 (473)
+.|++|||+|.+. ....+.|+..|+.. ... ++|++||. ++.
T Consensus 296 ~~VliIDEa~~l~---------------------~~a~~aLlk~lEe~----~~~-~~il~tn~~~~~i~~~~~~~~~~~ 349 (456)
T 2c9o_A 296 PGVLFVDEVHMLD---------------------IECFTYLHRALESS----IAP-IVIFASNRGNCVIRGTEDITSPHG 349 (456)
T ss_dssp ECEEEEESGGGCB---------------------HHHHHHHHHHTTST----TCC-EEEEEECCSEEECBTTSSCEEETT
T ss_pred ceEEEEechhhcC---------------------HHHHHHHHHHhhcc----CCC-EEEEecCCcccccccccccccccc
Confidence 4799999999872 46788899888853 233 45544433 678
Q ss_pred CCccccCCCceeeEEEeCCCCHHHHHHHHHHHhCcc
Q 012016 372 LDPALLRPGRMDVHVHMSYCTPSGFKLLAANYLGIK 407 (473)
Q Consensus 372 ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~~~l~~~ 407 (473)
|+|+++. ||.. +.|+.++.++...++...+...
T Consensus 350 l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~ 382 (456)
T 2c9o_A 350 IPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTE 382 (456)
T ss_dssp CCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHH
T ss_pred CChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHh
Confidence 9999999 9976 6999999999999998776533
No 173
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.00 E-value=0.00032 Score=64.84 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=27.5
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
.++|.||||+||||+++.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999988776
No 174
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.97 E-value=0.00047 Score=68.27 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=30.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
++.++|.||+|+|||+++..||..++..++.+|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 4579999999999999999999999988888764
No 175
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.96 E-value=0.00048 Score=61.98 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=28.1
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc---CCceEEcc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l---~~~~~~l~ 285 (473)
-+.|.|+||+||||+++.+++.+ |++++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999998 89988775
No 176
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.95 E-value=0.00044 Score=64.56 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=27.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
-++|.||||+||||+++.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 378999999999999999999999887765
No 177
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.95 E-value=0.00041 Score=63.39 Aligned_cols=31 Identities=29% Similarity=0.297 Sum_probs=27.9
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
-+.|.||+|+||||+++.||+ +|+++++.+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence 478999999999999999999 9998887764
No 178
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.90 E-value=0.0017 Score=59.50 Aligned_cols=110 Identities=9% Similarity=0.132 Sum_probs=66.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccccc------------cC--------------------chHHHHH
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTEL------------RS--------------------NSDLRTL 298 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~~------------~~--------------------~~~l~~l 298 (473)
..+++|+++|.|||++|-++|-.. |..++.+....- .. .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 468999999999999999998776 777776643220 00 0111222
Q ss_pred HHH----h--ccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCCCC
Q 012016 299 LVA----T--ANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKEKL 372 (473)
Q Consensus 299 ~~~----~--~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~l 372 (473)
+.. . ....+|||||+-..... .-.....+++.+.. .++..-||+|+|.+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~------------------g~l~~~ev~~~l~~----Rp~~~~vIlTGr~a--- 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAY------------------DYLPLEEVISALNA----RPGHQTVIITGRGC--- 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHT------------------TSSCHHHHHHHHHT----SCTTCEEEEECSSC---
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccC------------------CCCCHHHHHHHHHh----CcCCCEEEEECCCC---
Confidence 222 2 24589999999664320 01122335555542 34568899999874
Q ss_pred CccccCCCceeeEEEeCC
Q 012016 373 DPALLRPGRMDVHVHMSY 390 (473)
Q Consensus 373 d~aLlrpgRfd~~I~~~~ 390 (473)
++.|+. .-|.+=+|..
T Consensus 164 p~~l~e--~AD~VTem~~ 179 (196)
T 1g5t_A 164 HRDILD--LADTVSELRP 179 (196)
T ss_dssp CHHHHH--HCSEEEECCC
T ss_pred cHHHHH--hCcceeeecc
Confidence 566665 5566655543
No 179
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.90 E-value=0.00054 Score=65.45 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=30.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
...+.|.||+|+||||+++.||..+++++++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 357999999999999999999999999998865
No 180
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.89 E-value=0.00062 Score=63.64 Aligned_cols=31 Identities=19% Similarity=0.472 Sum_probs=27.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEE
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~ 283 (473)
++-++|.||||+||+|.++.||..++++.+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 4678899999999999999999999887653
No 181
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.89 E-value=0.00061 Score=63.16 Aligned_cols=32 Identities=34% Similarity=0.521 Sum_probs=28.2
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.-+.|.||+|+||||+++.+++.+|+++++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g 37 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSG 37 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCc
Confidence 36899999999999999999999998877643
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.88 E-value=0.00053 Score=62.80 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=26.9
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
-+.|.||+|+||||+++.+|. +|+++++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 578999999999999999998 899888765
No 183
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.88 E-value=0.00066 Score=64.18 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=27.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEE
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~ 283 (473)
+.-+.|.||||+||||+++.|+..+|+..+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4579999999999999999999999876554
No 184
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.87 E-value=0.0034 Score=63.04 Aligned_cols=23 Identities=52% Similarity=0.836 Sum_probs=21.5
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
.+++.||+|+||||++++|++.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999999877
No 185
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.86 E-value=0.00059 Score=62.21 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=28.8
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
-+.|.||+|+|||++++.+|..+|+++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999999998765
No 186
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.84 E-value=0.00063 Score=62.29 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=29.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
-+.|.|++|||||++++.++..+|+++++.|.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D~ 45 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVDR 45 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECcH
Confidence 57899999999999999999999999988663
No 187
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.84 E-value=0.00071 Score=61.53 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=28.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc-CCceEEccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLEL 286 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l-~~~~~~l~~ 286 (473)
.-+.|.||||+||||+++.++..+ |++++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 468999999999999999999999 588877653
No 188
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.83 E-value=0.00069 Score=61.45 Aligned_cols=29 Identities=24% Similarity=0.657 Sum_probs=26.1
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEE
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~ 283 (473)
-+.|.|+||+||||+++.||+.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987664
No 189
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.82 E-value=0.00038 Score=62.55 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=22.3
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~ 278 (473)
-++|.||||+||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999886
No 190
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.82 E-value=0.0019 Score=60.32 Aligned_cols=38 Identities=26% Similarity=0.197 Sum_probs=27.8
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHh----cCCceEEccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY----LNFDVYDLEL 286 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~----l~~~~~~l~~ 286 (473)
|.++..-++++|+||+|||+++..+|.. .+.+++.+++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5566677999999999999998876543 2556655443
No 191
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.80 E-value=0.0008 Score=62.33 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=25.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEE
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~ 283 (473)
++|.||||+||+|.++.||..+|++.+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 7889999999999999999999987754
No 192
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.79 E-value=0.0028 Score=59.44 Aligned_cols=62 Identities=10% Similarity=0.239 Sum_probs=38.5
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccc-------ccc-------------CchHHHHHHHHh---ccCceE
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT-------ELR-------------SNSDLRTLLVAT---ANRSIL 308 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~-------~~~-------------~~~~l~~l~~~~---~~~sIL 308 (473)
-++++||||+|||+++..++..+ +..++.+... .+. ....+.+.+... ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 47889999999999888777665 5555554211 110 112333333322 236899
Q ss_pred EEeccccc
Q 012016 309 VVEDIDCT 316 (473)
Q Consensus 309 ~iDdiD~l 316 (473)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999865
No 193
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.79 E-value=0.00081 Score=63.54 Aligned_cols=33 Identities=33% Similarity=0.361 Sum_probs=29.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
+..+.|.||||+|||++++.||..+++++++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g 41 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTG 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCC
Confidence 346899999999999999999999999887654
No 194
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.78 E-value=0.0008 Score=64.39 Aligned_cols=33 Identities=36% Similarity=0.428 Sum_probs=28.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh---cCCceEEccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLEL 286 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~---l~~~~~~l~~ 286 (473)
.-++|.|+||+|||++++.++.. +|++++.++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 46899999999999999999998 7888874443
No 195
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.77 E-value=0.00086 Score=60.53 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=26.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHhc---CCceEEcc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l---~~~~~~l~ 285 (473)
+.|.||+|+||||+++.+++.+ |++++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999999 99987654
No 196
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.77 E-value=0.0014 Score=59.73 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFD 280 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~ 280 (473)
.-++|.||||+||||+++.|+..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 458999999999999999999998763
No 197
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.75 E-value=0.00087 Score=61.24 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=26.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~ 285 (473)
+.-+.|.||+|+||||++++||..+ |...+.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 4568999999999999999999998 54433444
No 198
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.67 E-value=0.00092 Score=60.64 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=28.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.-+.|.|++|+|||++++.||.. |+++++.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 46899999999999999999998 99888766
No 199
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.65 E-value=0.0018 Score=66.48 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=38.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccccCchHHHHHHHH-hccCceEEEecc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTELRSNSDLRTLLVA-TANRSILVVEDI 313 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~-~~~~sIL~iDdi 313 (473)
+.-++|.||||+||||+++.++..+++.++..+ .+..-..+...... ...+..++||..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D--~~~~~~~~~~~~~~~l~~g~~vIiD~~ 317 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRD--TLGSWQRCVSSCQAALRQGKRVVIDNT 317 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCGG--GSCSHHHHHHHHHHHHHTTCCEEEESC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEccc--hHHHHHHHHHHHHHHHhcCCcEEEeCC
Confidence 456899999999999999999999987766544 33332333333222 234444556543
No 200
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.65 E-value=0.0012 Score=60.82 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=29.2
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
..+.|.|++|+|||++++.++..+|+++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 46899999999999999999999999988765
No 201
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.61 E-value=0.0013 Score=60.80 Aligned_cols=31 Identities=35% Similarity=0.467 Sum_probs=27.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.-+.|.|++|+||||+++.++. +|+++++.|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4689999999999999999998 899888765
No 202
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.58 E-value=0.0091 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
-.+++.|++|+|||+|+.++.+.-
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998643
No 203
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.56 E-value=0.0083 Score=61.82 Aligned_cols=61 Identities=20% Similarity=0.315 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 225 QEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 225 ~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
+.+++.+.+.+...+......... ...+.-+++.||+|+||||++..||.++ |..+..+++
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~ 136 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 136 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345556666666665431111111 1235678999999999999999999877 555554443
No 204
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.55 E-value=0.0019 Score=61.45 Aligned_cols=31 Identities=35% Similarity=0.548 Sum_probs=27.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
.-+.|.||+|+||||+++.||..||+.+++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 4689999999999999999999999988763
No 205
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.55 E-value=0.0013 Score=60.28 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=27.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc-CCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l-~~~~~~l~ 285 (473)
.-+.|.||+|+||||+++.|+..+ ++.++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 457899999999999999999988 67766655
No 206
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.54 E-value=0.0016 Score=61.12 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=28.6
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
..+.|.||+|+|||++++.+|..+|+++++.+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 45889999999999999999999999887754
No 207
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.54 E-value=0.0039 Score=55.48 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.5
Q ss_pred CceeEEeCCCCCCHHHHHHH
Q 012016 253 KRGYLLYGPPGTGKSSLIAA 272 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~a 272 (473)
+.-+.|.||+|+|||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 44589999999999999994
No 208
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.54 E-value=0.00058 Score=62.54 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=25.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceE
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~ 282 (473)
+.-|.|.|+||+||||+++.++..++.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 346899999999999999999998765433
No 209
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.51 E-value=0.014 Score=66.09 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=30.8
Q ss_pred ccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHh
Q 012016 222 AMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 222 ~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
+|.++..+.|.+.+. .. ...+-+.|+||+|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~----~~--------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALL----EL--------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHH----HC--------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHh----cc--------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 666666666655443 11 11467899999999999999999864
No 210
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.51 E-value=0.0025 Score=58.87 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.6
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
|++...-+.|.||+|+|||+|++.|+..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556679999999999999999999854
No 211
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.50 E-value=0.0013 Score=63.97 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=26.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc-CCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l-~~~~~~l~ 285 (473)
.-++|.||||+||||+++.++..+ ++.++..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 468999999999999999999974 77666543
No 212
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.48 E-value=0.0018 Score=61.46 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=25.9
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCce
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDV 281 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~ 281 (473)
+.-+.|.||+|+|||++++.|+..+++++
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 34689999999999999999999999873
No 213
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.48 E-value=0.016 Score=61.52 Aligned_cols=74 Identities=4% Similarity=0.073 Sum_probs=48.4
Q ss_pred ceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccCCCCceEEEEecCCCC--CCCccccCCCcee
Q 012016 306 SILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSSCGDERIIVFTTNHKE--KLDPALLRPGRMD 383 (473)
Q Consensus 306 sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~--~ld~aLlrpgRfd 383 (473)
-+|||||+..++... .......+..+... | ..-++-+|++|.+|. .++..++. -|.
T Consensus 345 ivvVIDE~~~L~~~~--------------~~~~~~~L~~Iar~--G----Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~ 402 (574)
T 2iut_A 345 IVVVVDEFADMMMIV--------------GKKVEELIARIAQK--A----RAAGIHLILATQRPSVDVITGLIKA--NIP 402 (574)
T ss_dssp EEEEESCCTTHHHHT--------------CHHHHHHHHHHHHH--C----TTTTEEEEEEESCCCTTTSCHHHHH--TCC
T ss_pred EEEEEeCHHHHhhhh--------------hHHHHHHHHHHHHH--H----hhCCeEEEEEecCcccccccHHHHh--hhc
Confidence 489999999876410 01112223333321 1 124588999999987 78877765 677
Q ss_pred eEEEeCCCCHHHHHHHHH
Q 012016 384 VHVHMSYCTPSGFKLLAA 401 (473)
Q Consensus 384 ~~I~~~~p~~~~r~~l~~ 401 (473)
..|.|...+..+-..++.
T Consensus 403 ~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 403 TRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEECCSCHHHHHHHHS
T ss_pred cEEEEEcCCHHHHHHhcC
Confidence 888899988888776663
No 214
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.46 E-value=0.0018 Score=59.27 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=25.3
Q ss_pred CCCCceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 250 KAWKRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 250 ~~~~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
.+.++-++|.||||+||||+++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34566799999999999999999999885
No 215
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.45 E-value=0.0017 Score=64.57 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=32.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL 289 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~ 289 (473)
+-++|.||+|+|||+|+..||..++..++..|.-.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 468999999999999999999999999988876654
No 216
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.43 E-value=0.0051 Score=57.88 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=26.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.++++||+|+|||.++.+++..++.+++.+-
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 4899999999999999999988876665544
No 217
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.43 E-value=0.002 Score=57.88 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
++-+.|.||+|+|||||++.|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34689999999999999999999764
No 218
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.41 E-value=0.0021 Score=59.10 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=29.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL 289 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~ 289 (473)
.++++|.||+|+|||+|+.+++...+ .++..|.-.+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 46899999999999999999999877 6666554443
No 219
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.41 E-value=0.013 Score=61.40 Aligned_cols=41 Identities=5% Similarity=0.095 Sum_probs=32.5
Q ss_pred ceEEEEecCCCC--CCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 012016 359 ERIIVFTTNHKE--KLDPALLRPGRMDVHVHMSYCTPSGFKLLAA 401 (473)
Q Consensus 359 ~~iiI~tTN~~~--~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~ 401 (473)
++-+|++|.+|. .++..++. -|...|.|...+..+.+.++.
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 478889999986 57776766 677888999999888887765
No 220
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.38 E-value=0.0053 Score=66.56 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=36.2
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccccc
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTE 288 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~~ 288 (473)
..|-+-.+++.+++.|...+. . +.-.|++||||||||+++..+...+ +..+..+..+.
T Consensus 183 ~~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 183 LTFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp CCCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred ccccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 344344567788877655432 1 1246999999999998766655544 55565555443
No 221
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.37 E-value=0.0022 Score=57.61 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=26.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC---CceEEcc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLE 285 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~---~~~~~l~ 285 (473)
+.-++|.|+||+|||++++.+|..++ .++..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 45689999999999999999999874 4444443
No 222
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.35 E-value=0.019 Score=56.02 Aligned_cols=59 Identities=15% Similarity=0.279 Sum_probs=39.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc----CCceEEccccccc----------------------CchHHHHHHHHhccCc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELTELR----------------------SNSDLRTLLVATANRS 306 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l----~~~~~~l~~~~~~----------------------~~~~l~~l~~~~~~~s 306 (473)
+..++|.||+|+||||++..||..+ |..+..+++.... ....++..+....++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 4578999999999999999999765 4455554433211 1123444444456678
Q ss_pred eEEEe
Q 012016 307 ILVVE 311 (473)
Q Consensus 307 IL~iD 311 (473)
+|+||
T Consensus 185 lvIiD 189 (296)
T 2px0_A 185 HVFVD 189 (296)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88888
No 223
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.34 E-value=0.0026 Score=62.44 Aligned_cols=34 Identities=21% Similarity=0.501 Sum_probs=29.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
++-++|.||+|+|||+|+..+|..++..++..|.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 4568999999999999999999999877776654
No 224
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.34 E-value=0.0082 Score=62.16 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=29.0
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc----CCceEEcc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLE 285 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l----~~~~~~l~ 285 (473)
|.++..-++|.||||+|||+|+..+|..+ |.++..++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 56666679999999999999999888754 55666554
No 225
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.34 E-value=0.0024 Score=57.46 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCC
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNF 279 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~ 279 (473)
-+.|.||+|+||||+++.|+..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 5789999999999999999987654
No 226
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.33 E-value=0.0058 Score=55.77 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=27.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~ 287 (473)
+.-+.|.||+|+|||++++.++..+ +.+++.++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3458899999999999999999976 6666655433
No 227
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.32 E-value=0.012 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.6
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
.+++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 228
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.30 E-value=0.001 Score=60.88 Aligned_cols=27 Identities=22% Similarity=0.133 Sum_probs=23.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNF 279 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~ 279 (473)
+.-|+|.|+||+||||+++.++..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999998743
No 229
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.28 E-value=0.0024 Score=57.98 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=22.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+.-+.|.||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568999999999999999999987
No 230
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.28 E-value=0.0054 Score=63.29 Aligned_cols=95 Identities=16% Similarity=0.262 Sum_probs=64.4
Q ss_pred HHHHHHhccCceEEEeccccccccccCCccccCCCCCCCccchhHHHHHHHHHhcccccC------CCCceEEEEec---
Q 012016 296 RTLLVATANRSILVVEDIDCTIDLQDRLPADIAGEGEGPIQQNKVTLSGFLNFIDGLWSS------CGDERIIVFTT--- 366 (473)
Q Consensus 296 ~~l~~~~~~~sIL~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~------~~~~~iiI~tT--- 366 (473)
++.+..+.+.+||++||||.+....+. .+.+....-....||..||+-..+ ...++++|+|.
T Consensus 242 ~~ai~~ae~~~il~~DEidki~~~~~~---------~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~ 312 (444)
T 1g41_A 242 QKAIDAVEQNGIVFIDEIDKICKKGEY---------SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQ 312 (444)
T ss_dssp HHHHHHHHHHCEEEEETGGGGSCCSSC---------SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCS
T ss_pred HHHHHHhccCCeeeHHHHHHHhhccCC---------CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccc
Confidence 344445557889999999999641110 011222233556899999973211 12468888886
Q ss_pred -CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 012016 367 -NHKEKLDPALLRPGRMDVHVHMSYCTPSGFKLLAA 401 (473)
Q Consensus 367 -N~~~~ld~aLlrpgRfd~~I~~~~p~~~~r~~l~~ 401 (473)
+.+.++-|.|+. ||+.+|+|+.++.+++..|+.
T Consensus 313 ~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 313 VARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp SCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred cCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 344556688887 999999999999999999884
No 231
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.25 E-value=0.0051 Score=56.27 Aligned_cols=63 Identities=13% Similarity=0.249 Sum_probs=40.4
Q ss_pred ceeEEeCCCCCCHH-HHHHHHHHhc--CCceEEcccc-------cccC----------chHHHHHHHHhccCceEEEecc
Q 012016 254 RGYLLYGPPGTGKS-SLIAAMANYL--NFDVYDLELT-------ELRS----------NSDLRTLLVATANRSILVVEDI 313 (473)
Q Consensus 254 rg~LL~GPpGtGKT-~la~alA~~l--~~~~~~l~~~-------~~~~----------~~~l~~l~~~~~~~sIL~iDdi 313 (473)
.-+++|||.|+||| .|++++.++. +..++.+... .+.+ ...+.+++....+-.+|+|||+
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDEa 100 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEG 100 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESSG
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEch
Confidence 35899999999999 8999999876 5566655422 0100 0111122222334579999999
Q ss_pred ccc
Q 012016 314 DCT 316 (473)
Q Consensus 314 D~l 316 (473)
.-+
T Consensus 101 QFf 103 (195)
T 1w4r_A 101 QFF 103 (195)
T ss_dssp GGC
T ss_pred hhh
Confidence 876
No 232
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.25 E-value=0.0061 Score=62.80 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=27.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
++.+++.||||+||||++..||..+ |..+..+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4579999999999999999999987 355554443
No 233
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.24 E-value=0.022 Score=52.25 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=32.1
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhc---CCCCceeEEeCCCCCCHHHH-HHHHHH
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVG---KAWKRGYLLYGPPGTGKSSL-IAAMAN 275 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g---~~~~rg~LL~GPpGtGKT~l-a~alA~ 275 (473)
.+|+++...+...+.+.+.- +..+..++... .--.+.+++.+|+|+|||.. +-.+..
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~ 74 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHH
Confidence 57888888777666554320 11111111110 01135799999999999986 334443
No 234
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.23 E-value=0.0072 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.2
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
-.+++.|++|+|||+|+.++.+.-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
No 235
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.21 E-value=0.0024 Score=61.93 Aligned_cols=31 Identities=29% Similarity=0.297 Sum_probs=27.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.-+.|.|++|+||||+++.++ .+|+++++.+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 458999999999999999999 6898887765
No 236
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.21 E-value=0.0027 Score=63.22 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=28.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
.-++|.||+|+|||+++..||..++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468999999999999999999999877666553
No 237
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.21 E-value=0.0026 Score=58.51 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=28.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEE
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~ 283 (473)
.-|.|.||+|||||++++.+|..||+++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 368999999999999999999999999996
No 238
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.20 E-value=0.0029 Score=58.23 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNF 279 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~ 279 (473)
+.-+.|.||+|+|||++++.|+..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 456899999999999999999998753
No 239
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.19 E-value=0.017 Score=49.70 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 240
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.17 E-value=0.0032 Score=57.92 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=27.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC----CceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~----~~~~~l~~ 286 (473)
+.-++|.|+||+||||+++.|+..++ .+++.++.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 45689999999999999999999875 44555553
No 241
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.16 E-value=0.013 Score=51.65 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
-.+++.|++|+|||+|+.++.+.-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 242
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.15 E-value=0.0045 Score=56.83 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=23.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
+.-+.|.||+|+|||||+++|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44588999999999999999999885
No 243
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.14 E-value=0.0085 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
.+++.|++|+|||+|+.++.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 244
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.12 E-value=0.017 Score=49.82 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred eeEEeCCCCCCHHHHHHHHHHh
Q 012016 255 GYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~ 276 (473)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 245
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.09 E-value=0.021 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999864
No 246
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.08 E-value=0.018 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=22.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
...++|.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999865
No 247
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.07 E-value=0.0042 Score=61.11 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=28.2
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELT 287 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~ 287 (473)
+-++|.||+|+|||+|+..+|..++..++..|.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3578999999999999999999998766655543
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.04 E-value=0.0041 Score=56.42 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=22.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
+.-+.|.||+|+||||+++.|+..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999999864
No 249
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.00 E-value=0.025 Score=50.75 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 250
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.98 E-value=0.021 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=17.5
Q ss_pred ceeEEeCCCCCCHHHH-HHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSL-IAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~l-a~alA~~ 276 (473)
+.+++.+|+|+|||.. +..+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 5799999999999986 3344443
No 251
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.96 E-value=0.0035 Score=57.39 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=26.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC--CceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~--~~~~~l~ 285 (473)
.-+.|.||+|+|||||++.|+..++ ..++..+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d 40 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLPMD 40 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecC
Confidence 4588999999999999999999987 5555443
No 252
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.96 E-value=0.012 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
-.+++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999863
No 253
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.95 E-value=0.0029 Score=59.55 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=26.7
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l 284 (473)
-+-|.||||+|||++++.|+..++++.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 366899999999999999999999888755
No 254
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.93 E-value=0.014 Score=51.16 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 255
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.92 E-value=0.0043 Score=55.85 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
+-+.|.||+|+|||||++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998764
No 256
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.91 E-value=0.0041 Score=56.81 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=22.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
++-+.|.||+|+|||||++.|+..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45789999999999999999998763
No 257
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.90 E-value=0.023 Score=59.93 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=24.6
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
|++...-++|.||||+|||+|++.++..+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45556679999999999999999999765
No 258
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.90 E-value=0.0064 Score=55.25 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
|-++|.||+|+|||+|++.|.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999988764
No 259
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.88 E-value=0.0091 Score=51.65 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=19.1
Q ss_pred eeEEeCCCCCCHHHHHHHHHH
Q 012016 255 GYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~ 275 (473)
.+++.|++|+|||+|+.++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999865
No 260
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.027 Score=50.49 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHh
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
...+++.|++|+|||+|+..+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 261
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.84 E-value=0.014 Score=52.89 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=19.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
+.+++.+|+|+|||.++..++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999988777664
No 262
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.83 E-value=0.05 Score=46.68 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.6
Q ss_pred eeEEeCCCCCCHHHHHHHHHHh
Q 012016 255 GYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~ 276 (473)
.+++.|++|+|||+|+.++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999763
No 263
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.82 E-value=0.0076 Score=62.03 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcc
Q 012016 225 QEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (473)
Q Consensus 225 ~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~ 285 (473)
+.+.+.+.+.+...+.....-.......++-+++.||+|+||||++..||..+ |..+..++
T Consensus 69 ~~v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 69 EWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 33455555556655543110000011235678999999999999999999877 55555444
No 264
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.81 E-value=0.028 Score=51.49 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=32.1
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCC---CCceeEEeCCCCCCHHHHHHHHH
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKA---WKRGYLLYGPPGTGKSSLIAAMA 274 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~---~~rg~LL~GPpGtGKT~la~alA 274 (473)
+..+|+++...+.+.+.+.+.- +..+..++....+ -.+.+++.+|+|+|||..+...+
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~ 72 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 72 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTT---CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHH
Confidence 3356888887777766654310 1111111111110 13579999999999998655443
No 265
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.80 E-value=0.0067 Score=53.56 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+...-+.|.||.|+|||+|+++|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 334458999999999999999999988
No 266
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.80 E-value=0.015 Score=50.64 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
-.+++.|+||+|||+|+.++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 36899999999999999999864
No 267
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.79 E-value=0.014 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 268
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.79 E-value=0.014 Score=52.02 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.2
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..+++.|++|+|||+|+.++.+.-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
No 269
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.77 E-value=0.021 Score=50.73 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999875
No 270
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.77 E-value=0.008 Score=58.90 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHhchhHHhhhc--CCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 225 QEQKTKIMQDLERFVKRKDYYRRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 225 ~~~k~~l~~~l~~fl~~~~~y~~~g--~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.||..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3455566666665554221001111 2334568999999999999999999987
No 271
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.76 E-value=0.0058 Score=59.96 Aligned_cols=33 Identities=36% Similarity=0.539 Sum_probs=27.4
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhcCCce
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV 281 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l~~~~ 281 (473)
.++++..+.|.||+|+|||||+++|+..+.-.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 456667799999999999999999999884333
No 272
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.75 E-value=0.0083 Score=54.22 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=28.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHhcCCceEEcccccc
Q 012016 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTEL 289 (473)
Q Consensus 256 ~LL~GPpGtGKT~la~alA~~l~~~~~~l~~~~~ 289 (473)
+|++|++|+|||++|..+|.. +.+++++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 888888776553
No 273
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=95.74 E-value=0.0094 Score=45.86 Aligned_cols=46 Identities=7% Similarity=-0.195 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC-CCCHHHHHHHHh
Q 012016 389 SYCTPSGFKLLAANYLGIKEHILFEEIEELISTT-QVTPAEVAEQLM 434 (473)
Q Consensus 389 ~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~t~a~i~~~l~ 434 (473)
|.|+.++|.+||+.++.........++..++..+ ++|+|||..+|.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~ 47 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 47 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 6899999999999999865332223444555433 699999988773
No 274
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.74 E-value=0.015 Score=65.40 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=20.8
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHH
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~ 275 (473)
...-+.|.||.|+||||+++.+|.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 345689999999999999999874
No 275
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.74 E-value=0.02 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..+++.|++|+|||+|+.++.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998754
No 276
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.71 E-value=0.0073 Score=64.94 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=30.9
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~ 287 (473)
+.-|+|.|+||+||||++++|+..| |.+++.++..
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 4568999999999999999999999 9999888643
No 277
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.71 E-value=0.016 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.8
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
.+++.|++|+|||+|+.++++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 278
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.70 E-value=0.021 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..+++.|++|+|||+|+.++.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998653
No 279
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.66 E-value=0.035 Score=62.43 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.0
Q ss_pred CceeEEeCCCCCCHHHHHHHHHH
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~ 275 (473)
..-++|.||.|+|||++++.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999853
No 280
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.66 E-value=0.023 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 281
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.65 E-value=0.0067 Score=56.26 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+.-+.|.||+|+|||||++.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4468999999999999999999977
No 282
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.64 E-value=0.041 Score=48.74 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..+++.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 368999999999999999988754
No 283
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.63 E-value=0.0073 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=23.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
..-+.|.||+|+|||||+++|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44588999999999999999999874
No 284
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.62 E-value=0.0076 Score=55.29 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
++-+.|.||+|+|||+|+++|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999998864
No 285
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.61 E-value=0.0063 Score=61.87 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=28.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
+.-++|.||+|+|||+|+..||..++..++..|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3468899999999999999999999876665543
No 286
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.55 E-value=0.039 Score=51.41 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..++|.|++|+|||+|+.++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 469999999999999999998754
No 287
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.55 E-value=0.0081 Score=55.99 Aligned_cols=29 Identities=38% Similarity=0.474 Sum_probs=24.1
Q ss_pred CCCCceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 250 KAWKRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 250 ~~~~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
.+...-+.|.||+|+|||||+++|+..+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34456689999999999999999999875
No 288
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.52 E-value=0.037 Score=61.36 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHh
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..-+.|.||.|+|||++++.+|..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456899999999999999999874
No 289
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.52 E-value=0.012 Score=61.50 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+.-+.|.||+|+|||||++.||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4458899999999999999999987
No 290
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.51 E-value=0.0069 Score=56.69 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=28.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~l~ 285 (473)
.-+.+.|++|||||++++.+|..+|+++++-+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~ 46 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYDDD 46 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHH
Confidence 36889999999999999999999999998743
No 291
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.51 E-value=0.027 Score=52.16 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=29.3
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHhchhHHhhhcC---CCCceeEEeCCCCCCHHHH
Q 012016 214 HPATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGK---AWKRGYLLYGPPGTGKSSL 269 (473)
Q Consensus 214 ~p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~---~~~rg~LL~GPpGtGKT~l 269 (473)
+..+|+++...+.+.+.+.+. .| ..+..++.... .-.+.+++.+|.|+|||..
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~--g~-~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAA--GF-ERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCV 77 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHT--TC-CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHC--CC-CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 346788887777666655331 01 11111111111 1135799999999999976
No 292
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.50 E-value=0.025 Score=48.92 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHH
Q 012016 255 GYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~ 275 (473)
.+++.|++|+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999974
No 293
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.017 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.8
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
.++|.|++|+|||+|+..+.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 294
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.017 Score=49.86 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHHh
Q 012016 255 GYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~ 276 (473)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 295
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.47 E-value=0.011 Score=59.34 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhchhHHhhhc--CCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 226 EQKTKIMQDLERFVKRKDYYRRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 226 ~~k~~l~~~l~~fl~~~~~y~~~g--~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.+++.+.+.+...+........+. ...+.-+.|.||.|+||||+++.||..+
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 345555555555553221001121 2334568999999999999999999987
No 296
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.47 E-value=0.013 Score=57.49 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 227 QKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 227 ~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
+++.+.+.+...+...... ......+.-+++.||+|+||||++..||..+ +..+..+++
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4455555555555322100 1112234568999999999999999999877 445554443
No 297
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.47 E-value=0.0071 Score=58.57 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=25.0
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
|.+...-++|.||||+|||+|+..+|..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45556679999999999999999999875
No 298
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.40 E-value=0.01 Score=55.51 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=25.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC--CceEE
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN--FDVYD 283 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~--~~~~~ 283 (473)
.-+.|.||||+||||+++.|++.++ .+++.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 3588999999999999999999986 45543
No 299
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.38 E-value=0.032 Score=48.64 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 300
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.35 E-value=0.011 Score=56.67 Aligned_cols=25 Identities=44% Similarity=0.731 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-++|.||+|+||||++++|+..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC
Confidence 4468999999999999999999876
No 301
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.35 E-value=0.013 Score=57.52 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=29.8
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
|.++..-++|.|+||+|||+++..+|... +.++..+++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 56667779999999999999999888654 456665553
No 302
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.32 E-value=0.037 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
-.+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999976
No 303
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.30 E-value=0.05 Score=48.71 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHH
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~ 275 (473)
...+++.|++|+|||+|+..+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999964
No 304
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.30 E-value=0.017 Score=56.94 Aligned_cols=36 Identities=33% Similarity=0.491 Sum_probs=28.3
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~ 287 (473)
.++-+++.||+|+|||+++..||..+ +..+..+++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35568999999999999999999877 5556555543
No 305
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.28 E-value=0.035 Score=49.38 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.1
Q ss_pred eeEEeCCCCCCHHHHHHHHHHh
Q 012016 255 GYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~ 276 (473)
.+++.|++|+|||+|+.++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 306
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.21 E-value=0.052 Score=63.56 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.7
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
++..-+.|.||+|+|||||+++|.+++
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 445568999999999999999999987
No 307
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.20 E-value=0.028 Score=50.49 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..+++.|++|+|||+|+.++.+.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998643
No 308
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.20 E-value=0.016 Score=56.47 Aligned_cols=27 Identities=30% Similarity=0.253 Sum_probs=23.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNF 279 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~ 279 (473)
+.-+.|.||+|+||||+++.|+..++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 446889999999999999999998853
No 309
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.17 E-value=0.035 Score=49.28 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999853
No 310
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.16 E-value=0.022 Score=50.99 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
-.+++.|++|+|||+|+.++.+.-
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998643
No 311
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.15 E-value=0.059 Score=59.59 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=32.4
Q ss_pred CCccccccchHHHHHHHHHHHHHHh--chhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHh
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVK--RKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~--~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
.+|+++...+...+.+...-..+.. .......+ .....+++.||+|+|||+++..++..
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l--~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLY--QNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHH--HHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHH--hCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4688887776655544322111110 11111111 11346999999999999977766543
No 312
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.14 E-value=0.012 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
-.+++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 313
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.13 E-value=0.025 Score=57.87 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=34.0
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhchhHHhhhcCCCCceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
+.+++++....+.+.. +..+ +. ....-+++.||+|+||||++++|++.+.
T Consensus 143 ~~~l~~Lg~~~~~~~~-L~~l---~~----------~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDN-FRRL---IK----------RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHH-HHHH---HT----------SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHH-HHHH---HH----------hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3567888776654332 2222 11 1123479999999999999999999884
No 314
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.13 E-value=0.005 Score=59.95 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=24.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC---CceEEcccccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELTEL 289 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~---~~~~~l~~~~~ 289 (473)
.-+.|.||+|+||||+++.++..++ ..+..+++..+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3588999999999999999999876 33444444444
No 315
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.13 E-value=0.0093 Score=56.19 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.5
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFD 280 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~ 280 (473)
-+-|.||+|+||||+++.|+..+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 47899999999999999999988755
No 316
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.11 E-value=0.011 Score=53.82 Aligned_cols=23 Identities=43% Similarity=0.780 Sum_probs=21.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
-+.|.||+|+|||||++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999976
No 317
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.11 E-value=0.017 Score=50.46 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
-.+++.|++|+|||+|+.++.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 318
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.11 E-value=0.01 Score=53.25 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=24.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceE
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~ 282 (473)
.+|+||.||+|+|||+++.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 569999999999999999999884 44443
No 319
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.11 E-value=0.0042 Score=56.77 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.9
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~ 278 (473)
-+.|.||+|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 320
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.10 E-value=0.036 Score=50.05 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+..+.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 35899999999999999999864
No 321
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.10 E-value=0.0085 Score=63.08 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=23.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
+.++++.||+|+||||++++|++.+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34799999999999999999999884
No 322
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.09 E-value=0.017 Score=62.29 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=20.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
...++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 357999999999999888777654
No 323
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.06 E-value=0.014 Score=52.40 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.7
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
...-+.|.||+|+|||+++..++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34578999999999999999999875
No 324
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.05 E-value=0.029 Score=55.42 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=22.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
.-+-|.||+|+||||+++.|+..++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3588999999999999999999875
No 325
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.04 E-value=0.021 Score=51.42 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..++|.|++|+|||+|+.++.+.-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 468999999999999999999753
No 326
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.03 E-value=0.026 Score=55.84 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.6
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+.+.-+.|.||+|+||||+++.||..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345568999999999999999999987
No 327
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.01 E-value=0.016 Score=53.62 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=28.8
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCCceEEccc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~~~~~l~~ 286 (473)
.+-|.|..|||||++++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 578999999999999999998 9999999885
No 328
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.01 E-value=0.086 Score=47.90 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=38.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccc--------cccC----------chHHHHHHHHhcc-CceEEEe
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT--------ELRS----------NSDLRTLLVATAN-RSILVVE 311 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~--------~~~~----------~~~l~~l~~~~~~-~sIL~iD 311 (473)
+-++++||+|+|||+.+..+++.+ +..++.+... .+.+ -....+++..... ..+|+||
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvViID 88 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIAID 88 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEEEEE
Confidence 357899999999999888777765 5555544211 0000 0111244444433 5799999
Q ss_pred ccccc
Q 012016 312 DIDCT 316 (473)
Q Consensus 312 diD~l 316 (473)
|+..+
T Consensus 89 Eaqfl 93 (191)
T 1xx6_A 89 EVQFF 93 (191)
T ss_dssp SGGGS
T ss_pred CCCCC
Confidence 99765
No 329
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.01 E-value=0.015 Score=58.62 Aligned_cols=27 Identities=41% Similarity=0.626 Sum_probs=23.4
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.+...++|.||+|+||||++++|++.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 334568999999999999999999876
No 330
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.027 Score=50.15 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=22.6
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
....+++.|++|+|||+|+.++++.-
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998754
No 331
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.94 E-value=0.014 Score=61.56 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
+.-|+|.|+||+|||++++.||.+++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44689999999999999999999984
No 332
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.93 E-value=0.026 Score=50.26 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=21.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
-.+++.|++|+|||+|+.++.+.-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999998654
No 333
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.91 E-value=0.12 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHh
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
...+++.|++|+|||+|+.++.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999865
No 334
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.91 E-value=0.062 Score=59.19 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHh
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
...+.|.||.|+|||++++.+|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 356899999999999999999874
No 335
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.90 E-value=0.028 Score=49.02 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
-.+++.|++|+|||+|+.++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999854
No 336
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.88 E-value=0.09 Score=51.45 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=17.6
Q ss_pred ceeEEeCCCCCCHHHHHHHHHH
Q 012016 254 RGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~ 275 (473)
+.+++.+|+|+|||..+...+-
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHH
Confidence 5899999999999987654443
No 337
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.88 E-value=0.025 Score=48.82 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 338
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.87 E-value=0.035 Score=49.85 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHh
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
...+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 339
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.87 E-value=0.02 Score=50.51 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..+++.|++|+|||+|+.++.+.-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998643
No 340
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.84 E-value=0.0088 Score=55.68 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=16.0
Q ss_pred CceeEEeCCCCCCHHHHHHHHH-Hhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMA-NYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA-~~l 277 (473)
+.-+.|.||+|+||||+++.|+ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3458899999999999999999 775
No 341
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.83 E-value=0.26 Score=47.68 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=30.7
Q ss_pred CCCccccccchHHHHHHHHHHHHHHhch-----hHHhhhcCCCCceeEEeCCCCCCHHHH
Q 012016 215 PATFETLAMEQEQKTKIMQDLERFVKRK-----DYYRRVGKAWKRGYLLYGPPGTGKSSL 269 (473)
Q Consensus 215 p~~f~~l~~~~~~k~~l~~~l~~fl~~~-----~~y~~~g~~~~rg~LL~GPpGtGKT~l 269 (473)
..+|+++...+.+.+.+... . +..+ ..+..+-...++.+++++|.|||||..
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~--g-~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAM--G-FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--T-CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHc--C-CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHH
Confidence 35789998887766655331 0 0111 111111111247899999999999975
No 342
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.79 E-value=0.019 Score=50.10 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 343
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.077 Score=46.93 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=20.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHH
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~ 275 (473)
...+++.|++|+|||+|+.++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999985
No 344
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.73 E-value=0.029 Score=50.04 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=20.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHh
Q 012016 255 GYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~ 276 (473)
.+++.|++|+|||+|+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 345
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.71 E-value=0.036 Score=49.39 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46899999999999999999873
No 346
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.69 E-value=0.036 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.4
Q ss_pred eeEEeCCCCCCHHHHHHHHHHh
Q 012016 255 GYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~ 276 (473)
.+++.|++|+|||+|+.++.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999753
No 347
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.69 E-value=0.02 Score=56.06 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+.-+.|.||+|+||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999999887
No 348
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.64 E-value=0.045 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.5
Q ss_pred eeEEeCCCCCCHHHHHHHHHHh
Q 012016 255 GYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~ 276 (473)
-++|.|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4899999999999999988753
No 349
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.62 E-value=0.068 Score=48.53 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..++|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 350
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.61 E-value=0.07 Score=55.25 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.6
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
.++|.||+|+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58999999999999999888764
No 351
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.60 E-value=0.033 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
-.+++.|++|+|||+|+.++.+.-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998643
No 352
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.60 E-value=0.017 Score=51.27 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.3
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcCC
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLNF 279 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~~ 279 (473)
-.+|+||.|+|||+++.||+..++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4689999999999999999998753
No 353
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.59 E-value=0.024 Score=58.50 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=29.5
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc----CCceEEccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLEL 286 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l----~~~~~~l~~ 286 (473)
|.++..-++|.|+||+|||+++..+|... +.++..+++
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56666679999999999999999887653 556666554
No 354
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.59 E-value=0.066 Score=60.88 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHH
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMA 274 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA 274 (473)
...++|.||.|+|||++++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4679999999999999999984
No 355
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.58 E-value=0.015 Score=54.65 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=23.0
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
..-+.|.||.|+|||||+++|+..+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 44689999999999999999998774
No 356
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.57 E-value=0.024 Score=51.17 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..++|.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 357
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.56 E-value=0.021 Score=55.92 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
.-+-|.||+|+|||||++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 358
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.55 E-value=0.052 Score=57.94 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.8
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
+..-+.|.||+|+|||||+++|++.+
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34458999999999999999999877
No 359
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.54 E-value=0.024 Score=50.47 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..+++.|++|+|||+|+.++.+.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 360
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.53 E-value=0.016 Score=54.63 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||.|+|||||+++|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999999976
No 361
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.53 E-value=0.03 Score=58.68 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=27.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
++.+++.|+||+||||++..||..+ |..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4579999999999999999999876 666665554
No 362
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.53 E-value=0.028 Score=62.30 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=20.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-.++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357999999999999888777654
No 363
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.51 E-value=0.011 Score=56.31 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=24.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc-CCceE
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL-NFDVY 282 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l-~~~~~ 282 (473)
.-|.|.|++|+||||+++.|+..+ +..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 458999999999999999999999 54444
No 364
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.50 E-value=0.14 Score=45.52 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=20.1
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
.++|.|++|+|||+|+..+.+..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999998887643
No 365
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.47 E-value=0.18 Score=54.90 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=16.8
Q ss_pred CceeEEeCCCCCCHHHHHH
Q 012016 253 KRGYLLYGPPGTGKSSLIA 271 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~ 271 (473)
.+.+++.||+|+|||+.+.
T Consensus 46 ~~~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHH
Confidence 5689999999999999873
No 366
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.46 E-value=0.067 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..++|.|+||+|||+|+.+|.+.-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 469999999999999999998643
No 367
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.46 E-value=0.023 Score=55.88 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=22.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
+.-+-|.||+|+|||||++.|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34578999999999999999999874
No 368
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.43 E-value=0.028 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999853
No 369
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.42 E-value=0.019 Score=61.19 Aligned_cols=34 Identities=26% Similarity=0.151 Sum_probs=29.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC----CceEEcccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLELT 287 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~----~~~~~l~~~ 287 (473)
.-|+|.|+||+||||++++|+..|+ .+++.++..
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 4589999999999999999999986 777777643
No 370
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.41 E-value=0.029 Score=58.87 Aligned_cols=26 Identities=12% Similarity=0.002 Sum_probs=24.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCC
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNF 279 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~ 279 (473)
..+.|.|++||||||++++||..|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999985
No 371
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.40 E-value=0.038 Score=56.80 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=29.0
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc----CCceEEcccc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELT 287 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l----~~~~~~l~~~ 287 (473)
.++.+++.|++|+||||++..||..+ |..+..+++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 35678999999999999999999776 6666666554
No 372
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.40 E-value=0.075 Score=47.77 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.6
Q ss_pred ceeEEeCCCCCCHHHHHHHHHH
Q 012016 254 RGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~ 275 (473)
.-++|.|++|+|||+|+..+++
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999964
No 373
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.38 E-value=0.056 Score=48.77 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 374
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.37 E-value=0.025 Score=52.96 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=24.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc-CCce
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL-NFDV 281 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l-~~~~ 281 (473)
.-+.|.|++|+||||+++.|+..+ +..+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 458999999999999999999999 4433
No 375
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.36 E-value=0.06 Score=48.11 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHH
Q 012016 254 RGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~ 275 (473)
..+++.|++|+|||+|+.++.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999997
No 376
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.36 E-value=0.029 Score=55.74 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=30.0
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
|..+..-++|.|+||+|||+++..+|..+ +.++..+++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56666679999999999999999988764 666665544
No 377
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.32 E-value=0.097 Score=55.94 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.4
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
++..-+-|.||+|+|||||+++|++.+
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 334568999999999999999999977
No 378
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=94.29 E-value=0.033 Score=43.79 Aligned_cols=48 Identities=10% Similarity=-0.135 Sum_probs=33.7
Q ss_pred EeCCCCHHHHHHHHHHHhCccccCCHHHHHHHHhcC-CCCHHHHHHHHh
Q 012016 387 HMSYCTPSGFKLLAANYLGIKEHILFEEIEELISTT-QVTPAEVAEQLM 434 (473)
Q Consensus 387 ~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~t~a~i~~~l~ 434 (473)
+-+.|+.++|.+|++.++.........++..+++.+ +||+|||.++|.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~ 55 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 55 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 347899999999999999754322222334444433 799999998874
No 379
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.28 E-value=0.03 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..++|.|++|+|||+|+..+.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 380
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.28 E-value=0.08 Score=47.39 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..+++.|++|+|||+|++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 469999999999999999888754
No 381
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.27 E-value=0.18 Score=49.79 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=30.1
Q ss_pred CCccccccchHHHHHHHHHHHHHHh--chhHHhhhcCCCCceeEEeCCCCCCHHHHHH
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVK--RKDYYRRVGKAWKRGYLLYGPPGTGKSSLIA 271 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~--~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~ 271 (473)
.+|+++...+.+.+.+.+.-...+. ..+.+..+-...++.+++.+|.|+|||..+.
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHH
Confidence 4677777777666655431000000 0011111111123789999999999998544
No 382
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.27 E-value=0.018 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=9.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998754
No 383
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.26 E-value=0.023 Score=53.61 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=22.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-+.|.||.|+|||||+++|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999876
No 384
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.25 E-value=0.015 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
..-+.|.||.|+|||||+++|+..+.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999998774
No 385
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.24 E-value=0.025 Score=50.50 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=25.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~ 285 (473)
+-+.|.|++|+|||+++..++..+ ++.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468899999999999999999886 45554443
No 386
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.23 E-value=0.028 Score=52.07 Aligned_cols=31 Identities=32% Similarity=0.290 Sum_probs=25.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc---CCceEEc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDL 284 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l 284 (473)
.-+.|.||+|+||||+++.++..+ +++++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 357889999999999999999988 4555543
No 387
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.21 E-value=0.027 Score=55.81 Aligned_cols=26 Identities=19% Similarity=0.583 Sum_probs=23.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
...+++.||+|+|||||+++|+..+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34799999999999999999999873
No 388
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.18 E-value=0.02 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
.-+.|.||.|+|||||+++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999975
No 389
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.16 E-value=0.021 Score=54.58 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
..-+.|.||.|+|||||+++|+..+.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999999874
No 390
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.15 E-value=0.02 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||.|+|||||+++|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4458999999999999999999876
No 391
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.15 E-value=0.019 Score=53.67 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||.|+|||||+++|+..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468899999999999999999987
No 392
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.11 E-value=0.02 Score=53.19 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=22.6
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
..-+.|.||.|+|||||+++|+..+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999998763
No 393
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.10 E-value=0.052 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
...+++.|++|+|||+|+.++.+.-
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999998743
No 394
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.08 E-value=0.027 Score=50.70 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..+.|.||+|+|||+|++.+++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999999863
No 395
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.08 E-value=0.014 Score=60.57 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
+..++|.|.||+|||++++.+|..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34699999999999999999999874
No 396
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.08 E-value=0.029 Score=52.56 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=18.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-|.|.||+|+||||+++.+++.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999999999999988
No 397
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.05 E-value=0.037 Score=57.13 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=30.6
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~ 287 (473)
|.++..-++|.|+||+|||+++..+|... |.++..+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 56666679999999999999998888765 6677766543
No 398
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.04 E-value=0.034 Score=55.75 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
...++|.||+|+|||||+++|+..+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45799999999999999999999874
No 399
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.03 E-value=0.023 Score=54.27 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||.|+|||||+++|+..+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4468999999999999999999876
No 400
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.03 E-value=0.031 Score=47.83 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.6
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
.+++.|++|+|||+|+.++++.-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 401
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.01 E-value=0.063 Score=47.29 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 402
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.00 E-value=0.021 Score=54.42 Aligned_cols=24 Identities=42% Similarity=0.776 Sum_probs=21.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-+.|.||.|+|||||+++|+..+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999876
No 403
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.99 E-value=0.024 Score=54.29 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=22.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
..-+.|.||.|+|||||+++|+..+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34588999999999999999999873
No 404
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.98 E-value=0.024 Score=54.53 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||.|+|||||+++|+..+
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4458899999999999999999977
No 405
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.96 E-value=0.21 Score=54.55 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=16.2
Q ss_pred CceeEEeCCCCCCHHHHH
Q 012016 253 KRGYLLYGPPGTGKSSLI 270 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la 270 (473)
.+.+++.||.|+|||..+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 568999999999999876
No 406
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.94 E-value=0.027 Score=56.45 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD 280 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~ 280 (473)
..-+.|.||+|+|||||++.|++.+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4468999999999999999999988654
No 407
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.92 E-value=0.069 Score=54.73 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=27.2
Q ss_pred CCceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 252 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
.+..+++.||+|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 34568889999999999999999887 445554443
No 408
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.91 E-value=0.027 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
-+.|.||+|+|||+|++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 409
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.90 E-value=0.039 Score=61.24 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=19.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
-+|+.||||||||+++..++..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999887766544
No 410
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.89 E-value=0.023 Score=53.89 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||.|+|||||+++|+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999999976
No 411
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.87 E-value=0.023 Score=53.91 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=22.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
..-+.|.||.|+|||||+++|+..+.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34588999999999999999998764
No 412
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.85 E-value=0.03 Score=60.19 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=20.9
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.+-+++.||||||||+++.++...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3579999999999999988777654
No 413
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.83 E-value=0.38 Score=49.45 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=33.2
Q ss_pred CCccccccchHHHHHHHHHHHHHHhc-----hhHHhhhcCCCCceeEEeCCCCCCHHHH-HHHHHHhc
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKR-----KDYYRRVGKAWKRGYLLYGPPGTGKSSL-IAAMANYL 277 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~-----~~~y~~~g~~~~rg~LL~GPpGtGKT~l-a~alA~~l 277 (473)
.+|+++...+...+.+... .| .. ...+..+-...++.+|+.||.|+|||.. +.++...+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~--g~-~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM--GF-NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT--TC-CSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred CCHHHcCCCHHHHHHHHHc--CC-CCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 4788888887766655331 00 00 0111111111247899999999999976 33444443
No 414
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.82 E-value=0.024 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-+.|.||.|+|||||+++|+..+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999999876
No 415
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.82 E-value=0.064 Score=48.95 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
.+.+++.|++|+|||+|+..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34789999999999999999998863
No 416
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.81 E-value=0.027 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.7
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~ 278 (473)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999999763
No 417
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.81 E-value=0.032 Score=53.46 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||.|+|||||+++|+..+
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999973
No 418
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.80 E-value=0.024 Score=53.40 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
..-+.|.||.|+|||||+++|+..+.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34588999999999999999999774
No 419
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.78 E-value=0.047 Score=53.20 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=27.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~~ 287 (473)
+.-+.+.||+|+|||+++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4568889999999999999999877 5666655544
No 420
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.78 E-value=0.054 Score=48.80 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=19.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHH
Q 012016 254 RGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~ 275 (473)
..+++.|++|+|||+|+.++.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999975
No 421
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.77 E-value=0.028 Score=53.57 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=22.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||.|+|||||+++|+..+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999999876
No 422
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.70 E-value=0.028 Score=56.31 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-+.|.||+|||||||+++||..+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 358899999999999999999976
No 423
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.70 E-value=0.031 Score=48.67 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.1
Q ss_pred eeEEeCCCCCCHHHHHHHHHHh
Q 012016 255 GYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~ 276 (473)
-+.|.|++|+|||+|+.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 424
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.69 E-value=0.031 Score=53.03 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHh
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..-+.|.||.|+|||||+++|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999996
No 425
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.69 E-value=0.029 Score=53.73 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||.|+|||||+++|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3458899999999999999999876
No 426
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.67 E-value=0.26 Score=47.51 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCce
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDV 281 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~ 281 (473)
+.+++.+|+|+|||..+...+-..+..+
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~ 59 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKS 59 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCE
Confidence 5799999999999987665554444333
No 427
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.67 E-value=0.034 Score=55.79 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-+.|.||+|||||||+++||..+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357899999999999999999976
No 428
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.63 E-value=0.027 Score=53.58 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||.|+|||||+++|+..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999876
No 429
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.62 E-value=0.027 Score=54.40 Aligned_cols=24 Identities=33% Similarity=0.744 Sum_probs=21.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-+.|.||.|+|||||+++|+..+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358899999999999999999877
No 430
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.61 E-value=0.24 Score=46.88 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
...+++.|++|+|||+|+.++.+.-
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999998754
No 431
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.59 E-value=0.035 Score=55.61 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-+.|.||+|||||||+++||..+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 457899999999999999999876
No 432
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.58 E-value=0.027 Score=54.06 Aligned_cols=26 Identities=35% Similarity=0.655 Sum_probs=22.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
..-+-|.||.|+|||||+++|+..+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34588999999999999999999773
No 433
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.57 E-value=0.036 Score=55.83 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||+|||||||+++||..+
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3458899999999999999999876
No 434
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.55 E-value=0.043 Score=50.94 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCce
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDV 281 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~ 281 (473)
.-+.|.||+|+||||+++.++..++.++
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 4588999999999999999999998643
No 435
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.53 E-value=0.029 Score=50.60 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999753
No 436
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.52 E-value=0.037 Score=55.86 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-+-|.||+|||||||+++||..+
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 358899999999999999999977
No 437
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.51 E-value=0.038 Score=47.99 Aligned_cols=23 Identities=43% Similarity=0.522 Sum_probs=20.5
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
-.+|+||.|+|||+++.||+-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998765
No 438
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.51 E-value=0.033 Score=55.74 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-+.|.||+|||||||+++||..+
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 458899999999999999999876
No 439
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.48 E-value=0.029 Score=49.80 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=20.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHHh
Q 012016 255 GYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~ 276 (473)
-++|.|++|+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 440
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.46 E-value=0.13 Score=51.13 Aligned_cols=25 Identities=40% Similarity=0.600 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||||+|||||+.+++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999999864
No 441
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.43 E-value=0.044 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
-.+++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 442
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.38 E-value=0.046 Score=47.70 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..+++.|++|+|||+|+..+.+.-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 469999999999999999998753
No 443
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.38 E-value=0.053 Score=54.10 Aligned_cols=32 Identities=34% Similarity=0.396 Sum_probs=25.6
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc---CCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~ 285 (473)
.-+.|.|+||+|||+++.+++..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 468999999999999999999876 55544443
No 444
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.37 E-value=0.022 Score=60.45 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=23.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
+..+.|.||+|+||||++++||..++
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 34589999999999999999999985
No 445
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.36 E-value=0.038 Score=57.79 Aligned_cols=39 Identities=15% Similarity=-0.016 Sum_probs=29.8
Q ss_pred cCCCCceeEEeCCCCCCHHHHHHHHHHhc----CCceEEcccc
Q 012016 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELT 287 (473)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~alA~~l----~~~~~~l~~~ 287 (473)
|.++..-++|.|+||+|||+++..+|..+ |.++..+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 45556669999999999999999888754 4566665543
No 446
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.35 E-value=0.036 Score=55.83 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=21.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-+.|.||+|||||||+++||..+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 458899999999999999999876
No 447
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.32 E-value=0.051 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
-.++|.|++|+|||+|+.++.+.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 448
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.27 E-value=0.096 Score=49.89 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..+.|.|+||+|||+|+.++.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 449
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.23 E-value=0.041 Score=50.20 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.1
Q ss_pred ceeEEeCCCCCCHHHHHHHHHH
Q 012016 254 RGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~ 275 (473)
-.+++.|++|+|||+|+.++.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3699999999999999999985
No 450
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.22 E-value=0.044 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+.|.|++|+|||+|+.++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999974
No 451
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.18 E-value=0.25 Score=49.98 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-++|.||+|+|||+|++.||+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3459999999999999999999865
No 452
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.17 E-value=0.039 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=22.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||.|+|||||+++|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999875
No 453
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.15 E-value=0.085 Score=50.06 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.2
Q ss_pred eeEEeCCCCCCHHHHHHHHHHh
Q 012016 255 GYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~ 276 (473)
.+.|.|+||+|||+|+.++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999875
No 454
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.12 E-value=0.36 Score=47.95 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=20.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHH
Q 012016 255 GYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~ 275 (473)
-+.+.|++|+|||||+.++.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999999998
No 455
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.10 E-value=0.032 Score=55.67 Aligned_cols=25 Identities=24% Similarity=0.638 Sum_probs=22.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||+|||||||+++||..+
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3458899999999999999999876
No 456
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.09 E-value=0.06 Score=46.86 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHh
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
...+++.|++|+|||+|+.++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999863
No 457
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.00 E-value=0.026 Score=50.27 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHh
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
...+++.|++|+|||+|+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999864
No 458
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.99 E-value=0.078 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.7
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l 277 (473)
-+-|.||+|+|||||+++|++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999854
No 459
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.98 E-value=0.13 Score=49.92 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=26.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc---CCceEEccc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l---~~~~~~l~~ 286 (473)
+..+.+.||+|+|||+++..+|..+ +..+..+++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4567888999999999999999876 455554443
No 460
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.98 E-value=0.025 Score=50.54 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l~ 278 (473)
.+.|.||+|+|||||++.|+..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999999874
No 461
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.98 E-value=0.068 Score=46.09 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999763
No 462
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.97 E-value=0.076 Score=48.48 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.4
Q ss_pred ceeEEeCCCCCCHHHHHHH-HHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAA-MANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~a-lA~~ 276 (473)
-.+++.|++|+|||+|+.. +.+.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 3589999999999999998 4443
No 463
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.96 E-value=0.037 Score=53.75 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||.|+|||||+++|+..+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4458999999999999999999876
No 464
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.91 E-value=0.61 Score=46.37 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=29.2
Q ss_pred CCccccccchHHHHHHHHHHHHHHhchhHHhhhc---CCCCceeEEeCCCCCCHHHHH
Q 012016 216 ATFETLAMEQEQKTKIMQDLERFVKRKDYYRRVG---KAWKRGYLLYGPPGTGKSSLI 270 (473)
Q Consensus 216 ~~f~~l~~~~~~k~~l~~~l~~fl~~~~~y~~~g---~~~~rg~LL~GPpGtGKT~la 270 (473)
.+|+++...+.+.+.+.+.- +..+..++... ....+.+++.+|.|+|||..+
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYG---FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF 94 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHH
T ss_pred cCHhhCCCCHHHHHHHHHcC---CCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHH
Confidence 46888877777666553310 00111111110 001356999999999999864
No 465
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.90 E-value=0.022 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.9
Q ss_pred ceeEEeCCCCCCHHHHHHHHHH
Q 012016 254 RGYLLYGPPGTGKSSLIAAMAN 275 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~ 275 (473)
..+++.|++|+|||+|+.++.+
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999884
No 466
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.85 E-value=0.15 Score=48.91 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+.|.|+||+|||+|+.++.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999874
No 467
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.84 E-value=0.32 Score=50.57 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=38.9
Q ss_pred eeEEeCCCCCCHHHH-HHHHHHhcCCceEEcccccccCchHHHHHHHHhc-----cCceEEEecccc
Q 012016 255 GYLLYGPPGTGKSSL-IAAMANYLNFDVYDLELTELRSNSDLRTLLVATA-----NRSILVVEDIDC 315 (473)
Q Consensus 255 g~LL~GPpGtGKT~l-a~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~-----~~sIL~iDdiD~ 315 (473)
-.+|.|++|||||+| +..|++..+.+++.+=+.-=...+++.+++.... .++++|.--.|.
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~ 230 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASE 230 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTS
T ss_pred EEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCC
Confidence 389999999999999 6799999887754332211122344444443332 467777766553
No 468
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.84 E-value=0.056 Score=50.43 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCC
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNF 279 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~ 279 (473)
.-+.|.|++|+|||++++.+++.++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45788899999999999999998754
No 469
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.81 E-value=0.076 Score=49.86 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=25.6
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc--CCceEEcc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL--NFDVYDLE 285 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l--~~~~~~l~ 285 (473)
..+++.|++|+||||++..+|..+ |..+..++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 357889999999999999999776 55555444
No 470
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.80 E-value=0.046 Score=55.42 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=22.2
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||+|||||||+++||..+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 4468999999999999999999865
No 471
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.80 E-value=0.23 Score=58.13 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=23.3
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
++...+-|.||+|+|||||+++|.+.+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 344558899999999999999999877
No 472
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.78 E-value=0.045 Score=57.66 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=22.4
Q ss_pred CCCCceeEEeCCCCCCHHHHHHH--HHHhc
Q 012016 250 KAWKRGYLLYGPPGTGKSSLIAA--MANYL 277 (473)
Q Consensus 250 ~~~~rg~LL~GPpGtGKT~la~a--lA~~l 277 (473)
++....++|.||+|+|||+|++. ++..+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 44566799999999999999999 44443
No 473
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.74 E-value=0.057 Score=50.82 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=22.0
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-+.|.||+|+||||+++.++..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999987
No 474
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.67 E-value=0.15 Score=49.67 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHh
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~ 276 (473)
+.-++|.|+||+|||+|+..+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999997754
No 475
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.66 E-value=0.068 Score=53.00 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=21.9
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||||+|||||+++++..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3458899999999999999999865
No 476
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.65 E-value=0.052 Score=50.20 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-|.|.|++|+||||.++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999988
No 477
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.65 E-value=0.032 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=21.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l 277 (473)
.-+.|.||+|||||||+++||..+
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 458899999999999999999876
No 478
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.65 E-value=0.071 Score=52.33 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=24.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceE
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~ 282 (473)
.+|++|.|++|+|||+++.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 468999999999999999999885 54444
No 479
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.61 E-value=0.061 Score=55.72 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.4
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
....-+.|.||.|+|||||++.|++.+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 334559999999999999999999976
No 480
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.61 E-value=0.051 Score=47.80 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
.-+.|.|+||+|||+|+.++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999975
No 481
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.57 E-value=0.12 Score=47.18 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.1
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+++.|++|+|||+|+..++..+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568888999999999999999876
No 482
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.54 E-value=0.058 Score=47.67 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
-.+++.|++|+|||+|+..+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 483
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.53 E-value=0.064 Score=46.70 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
..+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998753
No 484
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.45 E-value=0.055 Score=53.06 Aligned_cols=29 Identities=34% Similarity=0.362 Sum_probs=23.5
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhcCCceE
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l~~~~~ 282 (473)
.+|+||.||+|+|||+++.++.. -|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 57899999999999999998765 354444
No 485
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.42 E-value=0.037 Score=54.20 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.6
Q ss_pred CCCceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
++..-+.|.||+|+|||||+++|+..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 334568999999999999999999977
No 486
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.41 E-value=0.068 Score=53.63 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.3
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+-|.||+|+|||||+++|+..+
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3458899999999999999999876
No 487
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.39 E-value=0.52 Score=44.05 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=20.2
Q ss_pred ceeEEeCCCCCCHHHHH-HHHHHhc--CCceEEc
Q 012016 254 RGYLLYGPPGTGKSSLI-AAMANYL--NFDVYDL 284 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la-~alA~~l--~~~~~~l 284 (473)
.-++++||.|+|||+.+ +.+-++. |..++.+
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~ 53 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVI 53 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 34788999999999644 4444443 4455443
No 488
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.37 E-value=0.083 Score=52.63 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCce
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDV 281 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~ 281 (473)
.-+.|.||+|+|||+|++.|++.+..+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 3589999999999999999999986543
No 489
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.34 E-value=0.092 Score=55.60 Aligned_cols=33 Identities=30% Similarity=0.280 Sum_probs=26.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC---CceEEccc
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLEL 286 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~---~~~~~l~~ 286 (473)
.-++|.|+||+|||++++.++..++ .+++.++.
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~ 408 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG 408 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc
Confidence 4589999999999999999999874 45555553
No 490
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.33 E-value=0.03 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=20.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
..-+.|.||+|+|||||++++++..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999987643
No 491
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.30 E-value=0.28 Score=51.04 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=39.2
Q ss_pred eeEEeCCCCCCHHHH-HHHHHHhcCCceEEcccccccCchHHHHHHHHhc-----cCceEEEecccc
Q 012016 255 GYLLYGPPGTGKSSL-IAAMANYLNFDVYDLELTELRSNSDLRTLLVATA-----NRSILVVEDIDC 315 (473)
Q Consensus 255 g~LL~GPpGtGKT~l-a~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~-----~~sIL~iDdiD~ 315 (473)
-.+|.|++|||||+| +..|++..+.+++.+=+.-=...+++.+++.... .++++|.--.|.
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~ 243 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASD 243 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTS
T ss_pred EEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCC
Confidence 389999999999999 6799999887754332211123344444444332 457777766553
No 492
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.29 E-value=0.079 Score=46.29 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
-.+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 493
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.27 E-value=0.076 Score=46.47 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHh
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~ 276 (473)
-.+++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 494
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.27 E-value=0.08 Score=47.07 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.0
Q ss_pred eeEEeCCCCCCHHHHHHHHHHh
Q 012016 255 GYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~ 276 (473)
.+++.|++|+|||+|+..+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999998864
No 495
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.25 E-value=0.3 Score=50.82 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=39.2
Q ss_pred eEEeCCCCCCHHHH-HHHHHHhcCCceEEcccccccCchHHHHHHHHhc-----cCceEEEecccc
Q 012016 256 YLLYGPPGTGKSSL-IAAMANYLNFDVYDLELTELRSNSDLRTLLVATA-----NRSILVVEDIDC 315 (473)
Q Consensus 256 ~LL~GPpGtGKT~l-a~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~-----~~sIL~iDdiD~ 315 (473)
.+|.|++|||||+| +..|++..+.+++.+=+.-=...+++.+++.... .++++|.--.|.
T Consensus 166 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~ 231 (507)
T 1fx0_A 166 ELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADS 231 (507)
T ss_dssp CBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTS
T ss_pred EEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCC
Confidence 89999999999999 6799999877644322211123345555555443 456777766654
No 496
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.23 E-value=0.053 Score=47.79 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.9
Q ss_pred eeEEeCCCCCCHHHHHHHHHHh
Q 012016 255 GYLLYGPPGTGKSSLIAAMANY 276 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~ 276 (473)
.+++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999874
No 497
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.23 E-value=0.079 Score=49.19 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=23.4
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcCCceEE
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~~~~~~ 283 (473)
.-+.|.||.|+||||+++.|+.. +..+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 34789999999999999999998 444443
No 498
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.22 E-value=0.062 Score=53.77 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.3
Q ss_pred ceeEEeCCCCCCHHHHHHHHHHhcC
Q 012016 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (473)
Q Consensus 254 rg~LL~GPpGtGKT~la~alA~~l~ 278 (473)
..+.|.||+|+|||||+++|+..+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4689999999999999999998765
No 499
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.16 E-value=0.082 Score=47.36 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.7
Q ss_pred CceeEEeCCCCCCHHHHHHHHHHhc
Q 012016 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (473)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~alA~~l 277 (473)
...+++.|++|+|||+|+.++.+.-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998754
No 500
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.14 E-value=0.11 Score=47.70 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=24.7
Q ss_pred eeEEeCCCCCCHHHHHHHHHHhc--CCceEEc
Q 012016 255 GYLLYGPPGTGKSSLIAAMANYL--NFDVYDL 284 (473)
Q Consensus 255 g~LL~GPpGtGKT~la~alA~~l--~~~~~~l 284 (473)
=|.|-|+.|+||||.++.|+..| +.+++..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 36788999999999999999988 5555543
Done!