Query 012017
Match_columns 473
No_of_seqs 110 out of 203
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 19:58:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.2 4.7E-10 1.6E-14 113.4 20.4 335 35-428 64-408 (451)
2 3o7q_A L-fucose-proton symport 98.9 5.9E-07 2E-11 90.4 27.1 320 28-428 56-406 (438)
3 4aps_A DI-OR tripeptide H+ sym 98.7 7.5E-06 2.6E-10 84.1 27.8 140 291-430 301-448 (491)
4 2gfp_A EMRD, multidrug resista 98.6 2.8E-08 9.6E-13 98.6 5.6 305 31-418 33-340 (375)
5 2xut_A Proton/peptide symporte 97.6 0.0032 1.1E-07 65.0 19.4 50 381-430 418-467 (524)
6 2cfq_A Lactose permease; trans 97.2 0.00014 4.7E-09 73.9 2.7 115 306-427 257-373 (417)
7 3o7q_A L-fucose-proton symport 96.9 0.012 4.1E-07 58.7 14.3 132 292-427 45-176 (438)
8 4gc0_A D-xylose-proton symport 96.8 0.29 1E-05 49.5 24.2 118 299-419 303-421 (491)
9 4aps_A DI-OR tripeptide H+ sym 96.7 0.015 5.2E-07 59.2 13.3 155 291-452 31-194 (491)
10 2gfp_A EMRD, multidrug resista 96.7 0.016 5.4E-07 56.9 12.9 137 292-437 19-155 (375)
11 1pw4_A Glycerol-3-phosphate tr 96.6 0.0046 1.6E-07 61.9 8.5 139 281-424 36-175 (451)
12 2xut_A Proton/peptide symporte 96.3 0.025 8.7E-07 58.2 12.2 127 292-424 31-168 (524)
13 2kv5_A FST, putative uncharact 82.3 0.76 2.6E-05 30.7 2.2 20 154-173 3-22 (33)
14 4gc0_A D-xylose-proton symport 80.0 13 0.00044 37.2 11.7 121 309-429 56-187 (491)
15 2cfq_A Lactose permease; trans 60.0 12 0.0004 37.2 6.0 73 270-342 3-77 (417)
16 4b19_A PEPA1; toxin, toxin apo 26.5 26 0.00088 22.9 1.3 21 154-174 2-22 (30)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.23 E-value=4.7e-10 Score=113.43 Aligned_cols=335 Identities=10% Similarity=0.019 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHhhccceeecccccchhHHHHHHHHhhhHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Q 012017 35 AAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAV 114 (473)
Q Consensus 35 ~svygl~~~~s~i~fg~~vG~~iD~~~Rl~v~~~~i~~Qn~sv~~s~~~~~~ll~~~~~~~~~~~~~~~l~~l~~~~~~i 114 (473)
.+...-.-.+..+++++..|.+.||..|.+++..+.+..-++ +.+ ..+.... .+++..+.+... +.|..
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~----~~~--~~~~~~~--~~~~~~l~~~~~---l~G~~ 132 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV----MLF--MGFVPWA--TSSIAVMFVLLF---LCGWF 132 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH----HHH--HHHCHHH--HSSSSHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH----HHH--HHhhhhc--cccHHHHHHHHH---HHHHH
Confidence 344444555667788899999999999999887776543332 111 1110000 122222222221 12222
Q ss_pred HHHHhhhhhhhhccceEEEeeCCCCchhhhhhhhhhhhhHhhhhhhhhHHHHHHhhhhh-HHHHHHHHHHHhHHHHHHHH
Q 012017 115 GVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVS-LQASAMTLAIWTTVTVWVEY 193 (473)
Q Consensus 115 ~~Las~a~~IavERDWVvvi~~~~~~~~La~~Na~mRRIDL~ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy 193 (473)
......+ ..+.-.||. .+ ++..+.++...-...+..+++|.+.|.+.+..+ ++....+.++..++..++-+
T Consensus 133 ~~~~~~~-~~~~i~~~~----~~---~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~ 204 (451)
T 1pw4_A 133 QGMGWPP-CGRTMVHWW----SQ---KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204 (451)
T ss_dssp HHHTHHH-HHHHHHTTC----TT---THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred hhhccch-HHHHHHHHC----Cc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 2211111 122223442 22 467889999988999999999999999887666 66665555555555444322
Q ss_pred HHHHHHHhhccchhhchhhhhccCCCcccccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccc-chhhhhh
Q 012017 194 WLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVG-AWQVYLK 272 (473)
Q Consensus 194 ~~l~~VY~~vP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~w~~Y~~ 272 (473)
++ .|+-.++ . ++.+.++.++ +. + ++.++.. ++ + ....+ .++..++
T Consensus 205 ~~-------~~~~~~~---~-~~~~~~~~~~--~~--~------~~~~~~~-~~---------~---~~~~~~~~~~~~~ 250 (451)
T 1pw4_A 205 AM-------MRDTPQS---C-GLPPIEEYKN--DY--P------DDYNEKA-EQ---------E---LTAKQIFMQYVLP 250 (451)
T ss_dssp HH-------CCCSSTT---T-CCCSCTTTCC--C----------------------------------CCTHHHHHHTSS
T ss_pred hh-------ccCCHhh---c-CCCChhhhcc--cc--c------ccchhhh-hc---------c---cccccchHHHHHc
Confidence 22 2221110 0 0000000000 00 0 0000000 00 0 00011 1455566
Q ss_pred ccchhhhHHHHH-HHhhhcCCchhHHHHHHh-cCCCchHHHHHhHHHHHHHhhHHhhHHHHHhhh--hhhhHHHHHHHHH
Q 012017 273 QEVVLPGVSLAL-LFFTVLSFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRI--STLRTGLWSIWSQ 348 (473)
Q Consensus 273 q~vflaslalal-LY~TVLsf~~lmtaYl~~-~G~s~~~ig~~Rg~gav~Gl~gT~~~p~l~~ri--GlvrtGl~~l~~Q 348 (473)
+|.+.......+ .++..-++......|+++ .|+++...|..-+...+.++.+.++.+++.+|+ |..+.=.++....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 665554444333 333334566667778887 699999999999999999999999999999999 8665433332222
Q ss_pred HHHHHHHHHHhh-ccc-hhHHHHHHHhhhhhhcchhhhhhhhhhhhhccccCCCcccchhhhhHHHHHH-HHHHHH-HhH
Q 012017 349 WFCLLICVASIW-IHN-SLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQST-MDLMAY-TMG 424 (473)
Q Consensus 349 ~~~L~~~v~s~~-~~~-~~~s~~~l~~gi~~SR~GLW~fDL~v~qi~Qe~V~e~~Rg~v~gvq~Sl~sl-f~ll~~-v~~ 424 (473)
. .++...+. .+. +.. .+.....+.-+|..+.-.....+++|.+|+++||+..|+.+..+++ ...+.- +.+
T Consensus 331 ~---~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g 404 (451)
T 1pw4_A 331 V---TIATIVYWMNPAGNPT---VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404 (451)
T ss_dssp H---HHHHHHTTSCCTTCHH---HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHhcccCHH---HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12222222 221 211 1222222223344555555667899999999999999999999998 665544 444
Q ss_pred Hhcc
Q 012017 425 IIIS 428 (473)
Q Consensus 425 Ii~~ 428 (473)
.+..
T Consensus 405 ~l~~ 408 (451)
T 1pw4_A 405 YTVD 408 (451)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.91 E-value=5.9e-07 Score=90.42 Aligned_cols=320 Identities=10% Similarity=-0.033 Sum_probs=172.8
Q ss_pred cCCchhHHHHHHHHHHHHHHhhccceeecccccchhHHHHHHHHhhhHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Q 012017 28 WPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVIL 107 (473)
Q Consensus 28 ~p~sLl~~svygl~~~~s~i~fg~~vG~~iD~~~Rl~v~~~~i~~Qn~sv~~s~~~~~~ll~~~~~~~~~~~~~~~l~~l 107 (473)
+.-+-.-.+.....-.+..++.++..|.+.||..|.+++..+.+..-++ +.+... ... .+++..+.+...
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~----~~~~~~-~~~----~~~~~~l~~~~~- 125 (438)
T 3o7q_A 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG----AALFWP-AAE----IMNYTLFLVGLF- 125 (438)
T ss_dssp SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH----HHHHHH-HHH----TTCHHHHHHHHH-
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH----HHHHHh-ccc----cccHHHHHHHHH-
Confidence 3434455666667777788899999999999999999977765543322 111100 011 123333222221
Q ss_pred HHHHHHHHHHHh-hhhhhhhccceEEEeeCCCCchhhhhhhhhhhhhHhhhhhhhhHHHHHHh-hhhh------------
Q 012017 108 TNISGAVGVIST-LAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFII-SFVS------------ 173 (473)
Q Consensus 108 ~~~~~~i~~Las-~a~~IavERDWVvvi~~~~~~~~La~~Na~mRRIDL~ckllaPl~vG~l~-t~~s------------ 173 (473)
+.|.-..... .++ +.-.||. .+ ++..+.++...-.--...+++|++.|.+. +..+
T Consensus 126 --l~G~~~~~~~~~~~--~~~~~~~----~~---~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~ 194 (438)
T 3o7q_A 126 --IIAAGLGCLETAAN--PFVTVLG----PE---SSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSP 194 (438)
T ss_dssp --HHHHHHHHHHHHHH--HHHHHSS----CS---TTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCH
T ss_pred --HHHhhHHHhhhhHH--HHHHHHc----Cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCc
Confidence 1222121111 222 2223442 22 34566677777778889999999999998 5443
Q ss_pred -------------HHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhchhhhhccCCCcccccccCCcccccccccccc
Q 012017 174 -------------LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDE 240 (473)
Q Consensus 174 -------------~~~~~~~i~~~N~~S~~vEy~~l~~VY~~vP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (473)
.+......++...+...+ -.+...|+-.+ + .+.++ +
T Consensus 195 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~------~~~~~~p~~~~----~------~~~~~---------------~ 243 (438)
T 3o7q_A 195 EQLSAYKHSLVLSVQTPYMIIVAIVLLVALL------IMLTKFPALQS----D------NHSDA---------------K 243 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHCCCCCCTT----T------CCCCS---------------S
T ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHHHHH------HHHHcCCcccc----c------ccccc---------------c
Confidence 333333333332222211 11122231110 0 00000 0
Q ss_pred chhHHHHHHHHHHHHhhhcccccccchhhhhhccchhhhHHHHHHHhhh-cCCchhHHHH-HHhc-CCCchHHHHHhHHH
Q 012017 241 NNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTV-LSFGTLMTAT-LEWE-GIPAYIIGIARGIS 317 (473)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~w~~Y~~q~vflaslalalLY~TV-Lsf~~lmtaY-l~~~-G~s~~~ig~~Rg~g 317 (473)
.... ...|+..+++|.+...+...++|... .++...+..| +++. |+++...|..-++.
T Consensus 244 ~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 304 (438)
T 3o7q_A 244 QGSF-------------------SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGT 304 (438)
T ss_dssp TTSH-------------------HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred ccch-------------------hhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHH
Confidence 0000 13345556666555555444444443 3555667788 8887 99999999999999
Q ss_pred HHHHhhHHhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHhhhhhhcchhhhhhhhhhhhhcccc
Q 012017 318 ATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLV 397 (473)
Q Consensus 318 av~Gl~gT~~~p~l~~riGlvrtGl~~l~~Q~~~L~~~v~s~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~v~qi~Qe~V 397 (473)
.+.++.+.++.+++.+|+|..|.-.++.....+++ ....+.++...-...++.|.. .=..--....+.+|.+
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~ 376 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALC---LISAFAGGHVGLIALTLCSAF-----MSIQYPTIFSLGIKNL 376 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH---HHHHHCCHHHHHHHHHHHHHH-----HTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH---HHHHHcCCcHHHHHHHHHHHH-----HHHHHHHHHHHHHhhc
Confidence 99999999999999999998776555544433322 222333333222222333322 2222334555667888
Q ss_pred CCCcccchhhhhHHHHHHHHHH-HHHhHHhcc
Q 012017 398 PESDRCVVGGVQNSLQSTMDLM-AYTMGIIIS 428 (473)
Q Consensus 398 ~e~~Rg~v~gvq~Sl~slf~ll-~~v~~Ii~~ 428 (473)
|++ |+..++... .+.+...+ .++.+.+..
T Consensus 377 ~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 377 GQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp GGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred ccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 866 888777766 45444433 333444443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.71 E-value=7.5e-06 Score=84.05 Aligned_cols=140 Identities=8% Similarity=0.004 Sum_probs=77.9
Q ss_pred CCchhHHHHHHh-cCCCchHHHHHhHHHHHHHhhHHhhHHHHHhhhhhhhHHH-----HHHHHHHHHHHH-HHHHhhcc-
Q 012017 291 SFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGL-----WSIWSQWFCLLI-CVASIWIH- 362 (473)
Q Consensus 291 sf~~lmtaYl~~-~G~s~~~ig~~Rg~gav~Gl~gT~~~p~l~~riGlvrtGl-----~~l~~Q~~~L~~-~v~s~~~~- 362 (473)
.....+..|+.+ .+.+....|..-+...+..+.+..+..++.+|+|--+... ++.....++... +......+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4aps_A 301 QGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT 380 (491)
T ss_dssp GGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred hccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344556667776 4666566677777777777888888888888888432211 333332222211 11111100
Q ss_pred chhHHHHHHHhhhhhhcchhhhhhhhhhhhhccccCCCcccchhhhhHHHHHHHHHHHHHhHHhccCC
Q 012017 363 NSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNP 430 (473)
Q Consensus 363 ~~~~s~~~l~~gi~~SR~GLW~fDL~v~qi~Qe~V~e~~Rg~v~gvq~Sl~slf~ll~~v~~Ii~~~P 430 (473)
.+..+...+..+..+.=+|.-.+-.....+++|..|+++||+..|+.+..+++...+.-.+.-...+.
T Consensus 381 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 381 SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11111111222222222232233345566899999999999999999999988877665555444333
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.60 E-value=2.8e-08 Score=98.59 Aligned_cols=305 Identities=13% Similarity=0.073 Sum_probs=163.8
Q ss_pred chhHHHHHHHHHHHHHHhhccceeecccccchhHHHHHHHHhhhHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Q 012017 31 SLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNI 110 (473)
Q Consensus 31 sLl~~svygl~~~~s~i~fg~~vG~~iD~~~Rl~v~~~~i~~Qn~sv~~s~~~~~~ll~~~~~~~~~~~~~~~l~~l~~~ 110 (473)
+---.+...-...+..+++++..|.+.||..|.++...+.+..-++ +. .+... +++..+.+... +
T Consensus 33 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~----~~---~~~~~-----~~~~~l~~~~~---l 97 (375)
T 2gfp_A 33 REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA----TL---VAVTT-----SSLTVLIAASA---M 97 (375)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH----HH---HHHHH-----HHHHHHHHHHH---H
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH----HH---HHHHh-----ccHHHHHHHHH---H
Confidence 4445566666677778899999999999999999877665543222 11 11110 12222222111 1
Q ss_pred HHHHHHHHhhhhhhhhccceEEEeeCCCCchhhhhhhhhhhhhHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHhHHHHH
Q 012017 111 SGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVW 190 (473)
Q Consensus 111 ~~~i~~Las~a~~IavERDWVvvi~~~~~~~~La~~Na~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~ 190 (473)
.+........+ ..+.-.||. ++ ++..+.++...-.-....+++|.+.|.+.+..+.+....+.+...++...
T Consensus 98 ~g~~~~~~~~~-~~~~~~~~~----~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 98 QGMGTGVGGVM-ARTLPRDLY----ER---TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHH-HHHHHHHHH----HT---SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhhh-HHHHHHHHC----CH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 22222211111 111222332 22 23567777777788889999999999998877776665555554444332
Q ss_pred HHHHHHHHHHhhccchhhchhhhhccCCCcccccccCCccccccccccccchhHHHHHHHHHHHHhhhcccccccchhhh
Q 012017 191 VEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVY 270 (473)
Q Consensus 191 vEy~~l~~VY~~vP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~w~~Y 270 (473)
.- +...|+-. +++ ++. + ...+++++-
T Consensus 170 ~~-------~~~~~~~~---~~~---------~~~-~----------------------------------~~~~~~~~~ 195 (375)
T 2gfp_A 170 SM-------ARWMPETR---PVD---------APR-T----------------------------------RLLTSYKTL 195 (375)
T ss_dssp CC-------CCSSCCCS---TTT---------CCC-C----------------------------------CTTTCSTHH
T ss_pred HH-------HHHCcccC---CCC---------ccc-c----------------------------------cHHHHHHHH
Confidence 11 11122100 000 000 0 001233444
Q ss_pred hhccchhhh-HHHHHHHhhhcCCchhHHHHHHh-cCCCchHHHHHhHHHHHHHhhHHhhHHHHHhhhhhhhHHHHHHHHH
Q 012017 271 LKQEVVLPG-VSLALLFFTVLSFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQ 348 (473)
Q Consensus 271 ~~q~vflas-lalalLY~TVLsf~~lmtaYl~~-~G~s~~~ig~~Rg~gav~Gl~gT~~~p~l~~riGlvrtGl~~l~~Q 348 (473)
+++|.+... +...+.++..-++......|+++ .|+++...|..-+...+.++.+.++.+++.+|.|. +. ..+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~~-~~~~~~- 272 (375)
T 2gfp_A 196 FGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-LM-WQSVIC- 272 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-HH-HHHHHH-
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHH-
Confidence 455544333 33333333333344444446666 68899999999999999999999999999999985 11 111111
Q ss_pred HHHHHHHHHHhhc-cchhHHHHHHHhhhhhhcchhhhhhhhhhhhhccccCCCcccchhhhhHHHHHHHHH
Q 012017 349 WFCLLICVASIWI-HNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDL 418 (473)
Q Consensus 349 ~~~L~~~v~s~~~-~~~~~s~~~l~~gi~~SR~GLW~fDL~v~qi~Qe~V~e~~Rg~v~gvq~Sl~slf~l 418 (473)
+...+...... ..+..+...+..+.++.-+|.=........+.||.+| ++||+..|+.++.+++...
T Consensus 273 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~ 340 (375)
T 2gfp_A 273 --CLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG 340 (375)
T ss_dssp --HHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH
Confidence 01111110000 0001122223333333334444455667778899998 7899999999888776554
No 5
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.60 E-value=0.0032 Score=64.96 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=36.7
Q ss_pred hhhhhhhhhhhhhccccCCCcccchhhhhHHHHHHHHHHHHHhHHhccCC
Q 012017 381 GLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNP 430 (473)
Q Consensus 381 GLW~fDL~v~qi~Qe~V~e~~Rg~v~gvq~Sl~slf~ll~~v~~Ii~~~P 430 (473)
|.=.+-....-+.+|.+|+++||+..|+.+..+++...+.-.+.-..-++
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344455667889999999999999999999998877765555444443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.16 E-value=0.00014 Score=73.91 Aligned_cols=115 Identities=7% Similarity=0.020 Sum_probs=65.4
Q ss_pred CchHHHHHhHHHHHHHhhHHhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHhhhhhhcchhhhh
Q 012017 306 PAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMF 385 (473)
Q Consensus 306 s~~~ig~~Rg~gav~Gl~gT~~~p~l~~riGlvrtGl~~l~~Q~~~L~~~v~s~~~~~~~~s~~~l~~gi~~SR~GLW~f 385 (473)
+...+|..-++..+.++.+.+..+++.+|+|..|.-..+.....+++.. . .+.++ .....+ ...+.=++.=.+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~--~-~~~~~-~~~~~~---~~~l~~~~~~~~ 329 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG--S-SFATS-ALEVVI---LKTLHMFEVPFL 329 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--H-TTCCS-HHHHHH---HTTHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH--H-HHhcc-HHHHHH---HHHHHHHHHHHH
Confidence 3556788888888899999999999999999776544444332222111 1 11222 111111 111100111112
Q ss_pred hhhhhhhhccccCCCcccchhhh-hHHHHHHHHH-HHHHhHHhc
Q 012017 386 DLSVIQQMQDLVPESDRCVVGGV-QNSLQSTMDL-MAYTMGIII 427 (473)
Q Consensus 386 DL~v~qi~Qe~V~e~~Rg~v~gv-q~Sl~slf~l-l~~v~~Ii~ 427 (473)
-.....+..|..|++.||+..|. .++.+++... ...+.+.+.
T Consensus 330 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 22345688889999999998877 4666666543 344445444
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=96.92 E-value=0.012 Score=58.71 Aligned_cols=132 Identities=14% Similarity=0.071 Sum_probs=95.2
Q ss_pred CchhHHHHHHhcCCCchHHHHHhHHHHHHHhhHHhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 012017 292 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYML 371 (473)
Q Consensus 292 f~~lmtaYl~~~G~s~~~ig~~Rg~gav~Gl~gT~~~p~l~~riGlvrtGl~~l~~Q~~~L~~~v~s~~~~~~~~s~~~l 371 (473)
++..+..+.+.-|+++.++|..-+...+....+.....++.+|+|.-|.=+++.....+....+....+.++ ...+
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~----~~~l 120 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN----YTLF 120 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC----HHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccccc----HHHH
Confidence 333444566678999999999999999999999999999999999888766666554443333211122222 2333
Q ss_pred HhhhhhhcchhhhhhhhhhhhhccccCCCcccchhhhhHHHHHHHHHHHHHhHHhc
Q 012017 372 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIII 427 (473)
Q Consensus 372 ~~gi~~SR~GLW~fDL~v~qi~Qe~V~e~~Rg~v~gvq~Sl~slf~ll~~v~~Ii~ 427 (473)
+.+-.+.-+|.=.++.+..-++.|..|+++|+...|..++..++-..+...++-.+
T Consensus 121 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555567778888999999999999999999999998888777766444
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.85 E-value=0.29 Score=49.50 Aligned_cols=118 Identities=11% Similarity=0.084 Sum_probs=73.5
Q ss_pred HHHhcCCCchHHHHHhHHHHHHHhhHHhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHhhhhh
Q 012017 299 TLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHN-SLVAAYMLMVGVAT 377 (473)
Q Consensus 299 Yl~~~G~s~~~ig~~Rg~gav~Gl~gT~~~p~l~~riGlvrtGl~~l~~Q~~~L~~~v~s~~~~~-~~~s~~~l~~gi~~ 377 (473)
+.+..|.+.......-.+..+.++.++++..++.+|+|--+.-+++.....+++........... .......++..+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4gc0_A 303 VFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAA 382 (491)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 34456777777777777778888999999999999999887766666666555443322222222 22222222211111
Q ss_pred hcchhhhhhhhhhhhhccccCCCcccchhhhhHHHHHHHHHH
Q 012017 378 SRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLM 419 (473)
Q Consensus 378 SR~GLW~fDL~v~qi~Qe~V~e~~Rg~v~gvq~Sl~slf~ll 419 (473)
-=.|. --..--+..|..|.+.|++..|+-++.+++...+
T Consensus 383 ~~~~~---~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i 421 (491)
T 4gc0_A 383 FAMSW---GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF 421 (491)
T ss_dssp HHTTT---THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhHH---HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH
Confidence 11121 1122235668889999999999999988887654
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=96.70 E-value=0.015 Score=59.20 Aligned_cols=155 Identities=10% Similarity=0.029 Sum_probs=99.8
Q ss_pred CCchhHHHHHHh------cCCCchHHHHHhHHHHHHHhhHHhhHHHHHhh-hhhhhHHHHHHHHHHHHHHHHHHHhhccc
Q 012017 291 SFGTLMTATLEW------EGIPAYIIGIARGISATIGIAATILYPILQSR-ISTLRTGLWSIWSQWFCLLICVASIWIHN 363 (473)
Q Consensus 291 sf~~lmtaYl~~------~G~s~~~ig~~Rg~gav~Gl~gT~~~p~l~~r-iGlvrtGl~~l~~Q~~~L~~~v~s~~~~~ 363 (473)
+....+..|+.+ -|+++..+|..-+...+....+.....++.+| +|.-|.=.++.....+....+ .+.++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~---~~~~~ 107 (491)
T 4aps_A 31 GMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL---ALPFG 107 (491)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH---HSCCS
T ss_pred HHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH---HHhhh
Confidence 344567778887 59999999999999999999999999999999 898877666655544333222 12222
Q ss_pred hhHHHHHHHhhhhhhcchhhhhhhhhhhhhccccCCCc--ccchhhhhHHHHHHHHHHHHHhHHhccCCCcchhHHHHHH
Q 012017 364 SLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESD--RCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISV 441 (473)
Q Consensus 364 ~~~s~~~l~~gi~~SR~GLW~fDL~v~qi~Qe~V~e~~--Rg~v~gvq~Sl~slf~ll~~v~~Ii~~~P~~F~~lv~iS~ 441 (473)
. ..++.+..+.-+|.=.+.-+..-++.|..|+++ |+...+..+...++-..+...++-...+...+.+.-.+..
T Consensus 108 -~---~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 108 -A---SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp -T---THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred -H---HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1 122223333334555566778888899999988 7777777777777777665554444333233444444443
Q ss_pred HHHHHHHHHHH
Q 012017 442 IVVTLAAILYT 452 (473)
Q Consensus 442 ~~V~~a~~~y~ 452 (473)
.....+..++.
T Consensus 184 ~~~~~~~~~~~ 194 (491)
T 4aps_A 184 IGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.68 E-value=0.016 Score=56.86 Aligned_cols=137 Identities=11% Similarity=0.022 Sum_probs=97.6
Q ss_pred CchhHHHHHHhcCCCchHHHHHhHHHHHHHhhHHhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 012017 292 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYML 371 (473)
Q Consensus 292 f~~lmtaYl~~~G~s~~~ig~~Rg~gav~Gl~gT~~~p~l~~riGlvrtGl~~l~~Q~~~L~~~v~s~~~~~~~~s~~~l 371 (473)
+...+..|.++.|.++.++|..-+...+....+.....++.+|+|.-|.=.++......+...... .+ +...+
T Consensus 19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---~~----~~~~l 91 (375)
T 2gfp_A 19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT---TS----SLTVL 91 (375)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH---HH----HHHHH
T ss_pred HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH---hc----cHHHH
Confidence 444555567778999999999999999999999999999999999877766665554443322211 11 22333
Q ss_pred HhhhhhhcchhhhhhhhhhhhhccccCCCcccchhhhhHHHHHHHHHHHHHhHHhccCCCcchhHH
Q 012017 372 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLI 437 (473)
Q Consensus 372 ~~gi~~SR~GLW~fDL~v~qi~Qe~V~e~~Rg~v~gvq~Sl~slf~ll~~v~~Ii~~~P~~F~~lv 437 (473)
+.+..+.-+|.=.+..+...++.|..|+++|+..+|..+...++...+...++-..- ++++|-.
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~~ 155 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD--TMWNWRA 155 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS--CHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HhccHHH
Confidence 333333334444567778888999999999999999999999998888777765554 3445543
No 11
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.61 E-value=0.0046 Score=61.86 Aligned_cols=139 Identities=11% Similarity=-0.067 Sum_probs=93.9
Q ss_pred HHHHHHhhhcCCchhHHHHHHhcCCCchHHHHHhHHHHHHHhhHHhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 012017 281 SLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIW 360 (473)
Q Consensus 281 alalLY~TVLsf~~lmtaYl~~~G~s~~~ig~~Rg~gav~Gl~gT~~~p~l~~riGlvrtGl~~l~~Q~~~L~~~v~s~~ 360 (473)
+..+-++..-.+...+..|.++. +++..+|..-+...+....+...+.++.+|+|.-|.-+++.....+....+.....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 114 (451)
T 1pw4_A 36 GYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW 114 (451)
T ss_dssp HHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333333334445555566667 89999999999999999999999999999999877666665554443333222000
Q ss_pred -ccchhHHHHHHHhhhhhhcchhhhhhhhhhhhhccccCCCcccchhhhhHHHHHHHHHHHHHhH
Q 012017 361 -IHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMG 424 (473)
Q Consensus 361 -~~~~~~s~~~l~~gi~~SR~GLW~fDL~v~qi~Qe~V~e~~Rg~v~gvq~Sl~slf~ll~~v~~ 424 (473)
.++ ...++.+-++.-+|.=.+..+..-++.|..|+++|+...|..++..++-.++...++
T Consensus 115 ~~~~----~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 115 ATSS----IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHSS----SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cccc----HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 221 112223333333343456777888999999999999999999999888877766665
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=96.31 E-value=0.025 Score=58.19 Aligned_cols=127 Identities=13% Similarity=-0.049 Sum_probs=83.9
Q ss_pred CchhHHHHHHh-cC------CCchHHHHHhHHHHHHHhhHHhhHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHhhccc
Q 012017 292 FGTLMTATLEW-EG------IPAYIIGIARGISATIGIAATILYPILQSRI-STLRTGLWSIWSQWFCLLICVASIWIHN 363 (473)
Q Consensus 292 f~~lmtaYl~~-~G------~s~~~ig~~Rg~gav~Gl~gT~~~p~l~~ri-GlvrtGl~~l~~Q~~~L~~~v~s~~~~~ 363 (473)
....+..|+.+ .| +++..+|..-+...+..+.+.....++.+|+ |.-|.-.++.....++... ..+.+.
T Consensus 31 ~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~---~~~~~~ 107 (524)
T 2xut_A 31 MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAF---LAIFEH 107 (524)
T ss_dssp HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH---HHHTSS
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH---HHHhcc
Confidence 33456667765 57 9999999999999999999999999999999 9877765555443332222 112221
Q ss_pred hhHHHHHHHhhhhhhcchhhhhhhhhhhhhccccCCCcccchhhh---hHHHHHHHHHHHHHhH
Q 012017 364 SLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGV---QNSLQSTMDLMAYTMG 424 (473)
Q Consensus 364 ~~~s~~~l~~gi~~SR~GLW~fDL~v~qi~Qe~V~e~~Rg~v~gv---q~Sl~slf~ll~~v~~ 424 (473)
+ ...++.+..+.-+|-=.+..+..-++.|.+|+++||...+. .++..++-..+...++
T Consensus 108 ~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 108 S---VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp C---HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred c---HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22223333333344445567778889999999999877666 6666666665554443
No 13
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=82.30 E-value=0.76 Score=30.72 Aligned_cols=20 Identities=30% Similarity=0.708 Sum_probs=17.3
Q ss_pred HhhhhhhhhHHHHHHhhhhh
Q 012017 154 DLTCKLLAPAITGFIISFVS 173 (473)
Q Consensus 154 DL~ckllaPl~vG~l~t~~s 173 (473)
|++..++||+++|.+++.++
T Consensus 3 ~i~~~IIaPivVGvvl~L~d 22 (33)
T 2kv5_A 3 DLMSLVIAPIFVGLVLEMIS 22 (33)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999987543
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=79.98 E-value=13 Score=37.17 Aligned_cols=121 Identities=9% Similarity=-0.014 Sum_probs=72.3
Q ss_pred HHHHHhHHHHHHHhhHHhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh----------ccc-hhHHHHHHHhhhhh
Q 012017 309 IIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIW----------IHN-SLVAAYMLMVGVAT 377 (473)
Q Consensus 309 ~ig~~Rg~gav~Gl~gT~~~p~l~~riGlvrtGl~~l~~Q~~~L~~~v~s~~----------~~~-~~~s~~~l~~gi~~ 377 (473)
..|..-+.-.+-.+.|.+++.++.+|+|--++=+++.....++-+.+..+.. .+. -..+...|+.+=.+
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l 135 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence 4455544444555688999999999999777766666554444333321100 000 01122233333222
Q ss_pred hcchhhhhhhhhhhhhccccCCCcccchhhhhHHHHHHHHHHHHHhHHhccC
Q 012017 378 SRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISN 429 (473)
Q Consensus 378 SR~GLW~fDL~v~qi~Qe~V~e~~Rg~v~gvq~Sl~slf~ll~~v~~Ii~~~ 429 (473)
.=+|.=+.-.+..-++.|..|+++||...+........--++.+..+.....
T Consensus 136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 2233333334455677888999999999999888888888888777765543
No 15
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=60.03 E-value=12 Score=37.21 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=52.7
Q ss_pred hhhccchhhhHHHHHHHhhh-cCCchhHHHHHHh-cCCCchHHHHHhHHHHHHHhhHHhhHHHHHhhhhhhhHHH
Q 012017 270 YLKQEVVLPGVSLALLFFTV-LSFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGL 342 (473)
Q Consensus 270 Y~~q~vflaslalalLY~TV-Lsf~~lmtaYl~~-~G~s~~~ig~~Rg~gav~Gl~gT~~~p~l~~riGlvrtGl 342 (473)
.+|+|.+.......++|+.. -..-+.+..|+++ .|+++.++|..-+...+....+...+.++.+|+|.-|.=+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~ 77 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34555555444433444432 2233467888887 5999999999999999999999999999999999765433
No 16
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=26.52 E-value=26 Score=22.90 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=17.6
Q ss_pred HhhhhhhhhHHHHHHhhhhhH
Q 012017 154 DLTCKLLAPAITGFIISFVSL 174 (473)
Q Consensus 154 DL~ckllaPl~vG~l~t~~s~ 174 (473)
|.+-.+.+|+++|-+.+.+++
T Consensus 2 ~ifv~iia~visGcivalF~h 22 (30)
T 4b19_A 2 LIFVHIIAPVISGCAIAFFSY 22 (30)
T ss_dssp GGGTSSTTTTHHHHHHHHHHH
T ss_pred eeehhhHHHHHHHHHHHHHHH
Confidence 678899999999999886654
Done!