Query 012018
Match_columns 473
No_of_seqs 164 out of 206
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 20:00:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a98_B Engulfment and cell mot 27.7 30 0.001 32.5 2.6 16 164-179 184-199 (203)
2 1gp8_A Protein (scaffolding pr 21.1 90 0.0031 22.3 3.3 28 329-356 6-34 (40)
3 1gu4_A CAAT/enhancer binding p 15.9 1.4E+02 0.0046 24.1 3.8 48 10-57 23-74 (78)
4 3pvi_A Protein (pvuii endonucl 14.7 75 0.0026 28.5 2.1 24 435-462 109-133 (157)
5 2o3l_A Hypothetical protein; s 13.0 1.3E+02 0.0043 24.7 2.8 30 325-354 35-64 (85)
6 2o4t_A BH3976 protein; LEFT-ha 12.3 1.5E+02 0.005 25.1 3.1 30 325-354 32-61 (100)
7 1t2k_D Cyclic-AMP-dependent tr 12.1 4.3E+02 0.015 19.6 5.5 28 10-37 9-36 (61)
8 1ji8_A Dissimilatory siroheme- 11.0 79 0.0027 27.2 1.1 16 207-222 36-52 (111)
9 1c94_A Retro-GCN4 leucine zipp 10.8 1.6E+02 0.0055 20.3 2.3 26 447-472 5-37 (38)
10 1jnm_A Proto-oncogene C-JUN; B 10.3 5.4E+02 0.018 19.1 5.8 24 10-33 9-32 (62)
No 1
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=27.68 E-value=30 Score=32.47 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCCCC
Q 012018 164 FEDSPLPPETQPWDYF 179 (473)
Q Consensus 164 ~~ppp~PP~~s~WDFF 179 (473)
-.|||.||..+.||||
T Consensus 184 ~~~ppip~~P~~~dF~ 199 (203)
T 3a98_B 184 DAPPPIPKEPSNYDFV 199 (203)
T ss_dssp SSCCCCCCCCSCCCCS
T ss_pred CCCCCCCcCCCCccee
Confidence 3556677777899999
No 2
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=21.10 E-value=90 Score=22.30 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHhcCC-chhhhhhc
Q 012018 329 FFSSMKDIELLFIKASDSGK-EVPRMLEA 356 (473)
Q Consensus 329 ~~ev~keIe~~F~rA~~sg~-eVs~mLE~ 356 (473)
..+-|.+||.|.--||.-|+ |-.+|||.
T Consensus 6 ~~d~I~aiEQqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 6 SAANKDAIRKQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 45789999999999999997 67888886
No 3
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=15.90 E-value=1.4e+02 Score=24.08 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=33.9
Q ss_pred chHHHHHhHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhhhc
Q 012018 10 EDKALQLCRERKKFVRQALDGRCSLAATH----VMYVQSLRNTGTALRKFVE 57 (473)
Q Consensus 10 ~~~av~~CkeRk~~~k~Av~~R~~lAaaH----~~Y~~SL~~~g~aL~~f~~ 57 (473)
+.+||..||+.++.-.+.+..|...-..- ..-|..|+.--..|+.++-
T Consensus 23 NN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 23 NNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999998887654433 3345556665556665554
No 4
>3pvi_A Protein (pvuii endonuclease); complex (restriction endonuclease/DNA), mutant, protein/DNA, hydrolase/DNA complex; HET: DNA; 1.59A {Proteus vulgaris} SCOP: c.52.1.6 PDB: 1eyu_A* 1f0o_A 1pvi_A* 1ni0_A 1k0z_A 1h56_A 1pvu_A 2pvi_A*
Probab=14.68 E-value=75 Score=28.52 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=17.2
Q ss_pred ccccccccccchhhHHHHHHH-HHHHHHh
Q 012018 435 IFDSIHMISSSHASTLDRLYA-WERKLYD 462 (473)
Q Consensus 435 ~~ee~~m~sgShsSTLdRLya-WEkKLYd 462 (473)
+.+-++|. -.-|+.+|. ||+|+|+
T Consensus 109 l~~iY~l~----P~~lE~~y~~WE~kw~~ 133 (157)
T 3pvi_A 109 IEAIYRLE----PKDLEFYYDKWERKWYS 133 (157)
T ss_dssp EEEEEEEC----HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcC----HHHhHHHHHHHHHHHHh
Confidence 33445555 567889884 9999996
No 5
>2o3l_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=13.00 E-value=1.3e+02 Score=24.70 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=26.0
Q ss_pred CCcchHHHHHHHHHHHHHHHhcCCchhhhh
Q 012018 325 ASKDFFSSMKDIELLFIKASDSGKEVPRML 354 (473)
Q Consensus 325 ~~~d~~ev~keIe~~F~rA~~sg~eVs~mL 354 (473)
..+++.+++.+|=++|+.|+.-|+.|-.++
T Consensus 35 ~g~~~~~il~~lldlfEeaaa~G~~v~eV~ 64 (85)
T 2o3l_A 35 NGMDMLHIQYELIDLFEAGAAEGRQVLDIT 64 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCchHHHh
Confidence 446788999999999999999999987765
No 6
>2o4t_A BH3976 protein; LEFT-handed superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 1.95A {Bacillus halodurans} SCOP: a.69.4.1
Probab=12.34 E-value=1.5e+02 Score=25.07 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=25.6
Q ss_pred CCcchHHHHHHHHHHHHHHHhcCCchhhhh
Q 012018 325 ASKDFFSSMKDIELLFIKASDSGKEVPRML 354 (473)
Q Consensus 325 ~~~d~~ev~keIe~~F~rA~~sg~eVs~mL 354 (473)
..+++.+++.+|=++|+.|+..|+.|-.++
T Consensus 32 ~g~~~~~il~~lldlfEeaaa~Gk~v~eV~ 61 (100)
T 2o4t_A 32 ELNEGIGLLSEILGFFEEGAAAGKGVLDVT 61 (100)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCchHHHh
Confidence 446788899999999999999999887765
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=12.08 E-value=4.3e+02 Score=19.55 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=20.9
Q ss_pred chHHHHHhHHHHHHHHHHHHhhHHHHHH
Q 012018 10 EDKALQLCRERKKFVRQALDGRCSLAAT 37 (473)
Q Consensus 10 ~~~av~~CkeRk~~~k~Av~~R~~lAaa 37 (473)
+-.|.+.||+||.---+-++.+...-..
T Consensus 9 Nr~AA~k~R~rKk~~~~~Le~~~~~L~~ 36 (61)
T 1t2k_D 9 NRAAASRSRQKRKVWVQSLEKKAEDLSS 36 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3469999999998877777777654433
No 8
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=10.97 E-value=79 Score=27.22 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=12.3
Q ss_pred hHhh-hhcCCCCchhhh
Q 012018 207 RRLR-EEEGIPELEDEE 222 (473)
Q Consensus 207 revR-EeEGIPELEeE~ 222 (473)
+.+- ++|||++|-|+-
T Consensus 36 ~~lA~~~egI~eLTe~H 52 (111)
T 1ji8_A 36 EWLARELEGIQKMTEEH 52 (111)
T ss_dssp HHHHHHHTCCSSCCHHH
T ss_pred HHHHHhcCCchhcCHHH
Confidence 4555 899999998753
No 9
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=10.79 E-value=1.6e+02 Score=20.28 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=17.8
Q ss_pred hhHHHHHHHHH------HHHHhhhcCc-Ccccc
Q 012018 447 ASTLDRLYAWE------RKLYDEVKVP-NFLLW 472 (473)
Q Consensus 447 sSTLdRLyaWE------kKLYdEVKa~-E~~~~ 472 (473)
-..|.+|.|-| |-|.+|||.+ .+|+-
T Consensus 5 egvlkklravenelhynkslleevkdelqkmrq 37 (38)
T 1c94_A 5 EGVLKKLRAVENELHYNKSLLEEVKDELQKMRQ 37 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 34677887755 6778999974 45554
No 10
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=10.27 E-value=5.4e+02 Score=19.11 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=18.0
Q ss_pred chHHHHHhHHHHHHHHHHHHhhHH
Q 012018 10 EDKALQLCRERKKFVRQALDGRCS 33 (473)
Q Consensus 10 ~~~av~~CkeRk~~~k~Av~~R~~ 33 (473)
+-.|.+.||+||.---+-+..+..
T Consensus 9 Nr~AA~k~R~rKk~~~~~Le~~v~ 32 (62)
T 1jnm_A 9 NRIAASKSRKRKLERIARLEEKVK 32 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999876666666554
Done!