Query 012018
Match_columns 473
No_of_seqs 164 out of 206
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 20:00:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012018.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012018hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mwqa_ d.58.4.7 (A:) Hypothet 16.1 26 0.0019 26.8 1.5 23 27-49 15-37 (100)
2 d1fpwa_ a.39.1.5 (A:) Frequeni 13.7 35 0.0025 28.0 1.8 19 1-19 1-19 (190)
3 d2o4ta1 a.69.4.1 (A:16-105) Un 13.0 65 0.0047 24.6 3.1 30 325-354 30-59 (90)
4 d2o3la1 a.69.4.1 (A:14-95) Hyp 12.4 63 0.0046 24.3 2.8 30 325-354 34-63 (82)
5 d1nvpb_ a.32.1.1 (B:) Large ch 12.2 53 0.0039 22.1 2.1 15 446-460 27-42 (43)
6 d1wiga1 g.39.1.3 (A:1-32) Acti 11.2 28 0.002 22.0 0.2 13 352-364 18-30 (32)
7 d1fxkc_ a.2.5.1 (C:) Prefoldin 9.2 3.7E+02 0.027 20.3 7.2 41 9-49 85-125 (133)
8 d1i4da_ a.238.1.2 (A:) Arfapti 7.8 4.5E+02 0.033 20.2 7.7 47 13-59 11-57 (200)
9 d2je6b2 d.101.1.1 (B:156-241) 7.8 1.2E+02 0.0085 21.9 2.8 20 13-32 66-85 (86)
10 d2d0ob1 c.51.3.2 (B:5-112) Dio 7.3 54 0.0039 26.1 0.6 15 203-217 15-32 (108)
No 1
>d1mwqa_ d.58.4.7 (A:) Hypothetical protein HI0828 {Haemophilus influenzae [TaxId: 727]}
Probab=16.07 E-value=26 Score=26.82 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=19.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 012018 27 ALDGRCSLAATHVMYVQSLRNTG 49 (473)
Q Consensus 27 Av~~R~~lAaaH~~Y~~SL~~~g 49 (473)
+.+.|.++-.+|.+|++.|..-|
T Consensus 15 ~~~~R~~~r~~H~~~l~~~~~~g 37 (100)
T d1mwqa_ 15 TLEKRLAVREQHLARLKQLQAEN 37 (100)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHTT
T ss_pred cHHHHHHhhHHHHHHHHHHHhcC
Confidence 46789999999999999988755
No 2
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.72 E-value=35 Score=28.02 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=15.7
Q ss_pred CCCCcccccchHHHHHhHH
Q 012018 1 MGVSSSKLEEDKALQLCRE 19 (473)
Q Consensus 1 MGc~~Sk~d~~~av~~Cke 19 (473)
||+..||+..++.-.|++.
T Consensus 1 MG~~~S~l~~e~l~~l~~~ 19 (190)
T d1fpwa_ 1 MGAKTSKLSKDDLTCLKQS 19 (190)
T ss_dssp CCCCSCCSTTHHHHHHTTT
T ss_pred CCCccCCCCHHHHHHHHHH
Confidence 9999999998887666663
No 3
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]}
Probab=12.96 E-value=65 Score=24.59 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=26.3
Q ss_pred CCcchHHHHHHHHHHHHHHHhcCCchhhhh
Q 012018 325 ASKDFFSSMKDIELLFIKASDSGKEVPRML 354 (473)
Q Consensus 325 ~~~d~~ev~keIe~~F~rA~~sg~eVs~mL 354 (473)
..+++.+++.+|-+.|+.|..-|+.|-.++
T Consensus 30 ~~~~~~~il~dil~lleea~~~G~~v~ev~ 59 (90)
T d2o4ta1 30 ELNEGIGLLSEILGFFEEGAAAGKGVLDVT 59 (90)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCHHHHh
Confidence 345788999999999999999999998775
No 4
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus cereus [TaxId: 1396]}
Probab=12.38 E-value=63 Score=24.26 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=26.5
Q ss_pred CCcchHHHHHHHHHHHHHHHhcCCchhhhh
Q 012018 325 ASKDFFSSMKDIELLFIKASDSGKEVPRML 354 (473)
Q Consensus 325 ~~~d~~ev~keIe~~F~rA~~sg~eVs~mL 354 (473)
..+++.+++.+|=++|+.|..-|+.|-.++
T Consensus 34 ~~~~~~~il~dil~l~eea~~~G~~v~ev~ 63 (82)
T d2o3la1 34 NGMDMLHIQYELIDLFEAGAAEGRQVLDIT 63 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCHHHHh
Confidence 346888999999999999999999998775
No 5
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.21 E-value=53 Score=22.15 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=12.2
Q ss_pred hhhHHHHHH-HHHHHH
Q 012018 446 HASTLDRLY-AWERKL 460 (473)
Q Consensus 446 hsSTLdRLy-aWEkKL 460 (473)
--+||+.|- -||.||
T Consensus 27 De~vL~eLk~~We~KL 42 (43)
T d1nvpb_ 27 DEQVLMELKTLWENKL 42 (43)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhc
Confidence 378999986 599998
No 6
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.15 E-value=28 Score=22.01 Aligned_cols=13 Identities=46% Similarity=0.853 Sum_probs=11.2
Q ss_pred hhhhcccCCCCcc
Q 012018 352 RMLEANKLHFRPI 364 (473)
Q Consensus 352 ~mLE~~k~~y~~~ 364 (473)
++||+|--+|+|.
T Consensus 18 kVLEAG~khYHP~ 30 (32)
T d1wiga1 18 RVLEAGEKHYHPS 30 (32)
T ss_dssp CCBCCSSCCBCTT
T ss_pred hhhhccccccCCC
Confidence 6899999999984
No 7
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=9.17 E-value=3.7e+02 Score=20.31 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=31.0
Q ss_pred cchHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 012018 9 EEDKALQLCRERKKFVRQALDGRCSLAATHVMYVQSLRNTG 49 (473)
Q Consensus 9 d~~~av~~CkeRk~~~k~Av~~R~~lAaaH~~Y~~SL~~~g 49 (473)
+-++|+.+|+.|.+.++..++....-...-.+.+..|...-
T Consensus 85 ~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~ 125 (133)
T d1fxkc_ 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999998877666666666666555443
No 8
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.83 E-value=4.5e+02 Score=20.24 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=32.1
Q ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012018 13 ALQLCRERKKFVRQALDGRCSLAATHVMYVQSLRNTGTALRKFVEPE 59 (473)
Q Consensus 13 av~~CkeRk~~~k~Av~~R~~lAaaH~~Y~~SL~~~g~aL~~f~~~e 59 (473)
.....++-...++..+..=-++..+...+++....+|.+|..+..++
T Consensus 11 ~~~~l~~~~~~~~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~ 57 (200)
T d1i4da_ 11 QIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKS 57 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 55666666666666666666666777777777777777777776544
No 9
>d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=7.77 E-value=1.2e+02 Score=21.88 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=13.2
Q ss_pred HHHHhHHHHHHHHHHHHhhH
Q 012018 13 ALQLCRERKKFVRQALDGRC 32 (473)
Q Consensus 13 av~~CkeRk~~~k~Av~~R~ 32 (473)
|..-|++=..+||+|+..||
T Consensus 66 a~~~~~~I~~~~~e~l~~ry 85 (86)
T d2je6b2 66 AVKGINIIYNLEREALKSKY 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34445555667888888887
No 10
>d2d0ob1 c.51.3.2 (B:5-112) Diol dehydratase-reactivating factor small subunit DdrB {Klebsiella oxytoca [TaxId: 571]}
Probab=7.33 E-value=54 Score=26.09 Aligned_cols=15 Identities=47% Similarity=0.554 Sum_probs=11.5
Q ss_pred chhhhHhh---hhcCCCC
Q 012018 203 ADDLRRLR---EEEGIPE 217 (473)
Q Consensus 203 s~d~revR---EeEGIPE 217 (473)
.+-+|+|- ||||||=
T Consensus 15 ~~vl~evl~GIEEEGIP~ 32 (108)
T d2d0ob1 15 DGLWREVLLGIEEEGIPF 32 (108)
T ss_dssp GGGGHHHHHHHHHTTCCE
T ss_pred HHHHHHHHccccccCCcE
Confidence 34577777 9999995
Done!