BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012022
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 320 bits (820), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 156/220 (70%), Positives = 179/220 (81%), Gaps = 3/220 (1%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
+P SVDWR KGAV VKDQGQCGSCWAFST+ AVEGINQI T L+SLSEQELVDCD
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
NQGCNGGLMDYAF+FI + GGI TE +YPY+A DG+CD +++NA V+IDG+E+VP+NDE
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGT--DGHLDYWI 315
+L KAVA+QPVSVAI+AGG FQ Y GVFTG CGTELDHGV VGYGT DG YW
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDG-TKYWT 180
Query: 316 VRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIKK 355
V+NSWGP+WGE GYIRMER ++ K G CGIA+E SYPIKK
Sbjct: 181 VKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKK 220
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 293 bits (749), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 141/221 (63%), Positives = 171/221 (77%), Gaps = 2/221 (0%)
Query: 136 DALPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDK 195
D LP+S+DWR GAV PVK+QG CGSCWAFSTV AVEGINQIVTGDLISLSEQ+LVDC
Sbjct: 1 DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTT 60
Query: 196 QYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQN 255
N GC GG M+ AF+FI+ NGGI++EE YPY+ DG C+ + NA VV+ID YE+VP +
Sbjct: 61 A-NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICN-STVNAPVVSIDSYENVPSH 118
Query: 256 DEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWI 315
+E+SLQKAVA+QPVSV ++A G FQLY+SG+FTG C +H + VGYGT+ D+WI
Sbjct: 119 NEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDFWI 178
Query: 316 VRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIKKG 356
V+NSWG +WGESGYIR ERN+ GKCGI SYP+KKG
Sbjct: 179 VKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVKKG 219
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 285 bits (728), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 137/217 (63%), Positives = 162/217 (74%), Gaps = 3/217 (1%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
LP VDWR+KGAV +K+Q QCGSCWAFS V AVE IN+I TG LISLSEQELVDCD
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTA- 59
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
+ GCNGG M+ AF++II NGGIDT+++YPY A GSC P R VV+I+G++ V +N+E
Sbjct: 60 SHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYR--LRVVSINGFQRVTRNNE 117
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVR 317
+LQ AVASQPVSV +EA G FQ Y SG+FTG CGT +HGV+ VGYGT +YWIVR
Sbjct: 118 SALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVR 177
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
NSWG +WG GYI MERNV + G CGIA PSYP K
Sbjct: 178 NSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTK 214
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 284 bits (726), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 137/218 (62%), Positives = 168/218 (77%), Gaps = 2/218 (0%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
LP+ VDWR+ GAV +KDQGQCGSCWAFST+ AVEGIN+I TGDLISLSEQELVDC +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 198 N-QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQND 256
N +GC+GG M F+FII NGGI+TE +YPY A +G C+ + + V+ID YE+VP N+
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 257 EKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIV 316
E +LQ AVA QPVSVA+EA G FQ Y SG+FTG CGT +DH V VGYGT+G +DYWIV
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIV 180
Query: 317 RNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
+NSWG WGE GY+R++RNV G+CGIA + SYP+K
Sbjct: 181 KNSWGTTWGEEGYMRIQRNVG-GVGQCGIAKKASYPVK 217
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 281 bits (720), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 141/222 (63%), Positives = 165/222 (74%), Gaps = 6/222 (2%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
LP SVDWR KGAV VKDQG+CGSCWAFSTV +VEGIN I TG L+SLSEQEL+DCD
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTAD 63
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNR--KNAHVVT-IDGYEDVPQ 254
N GC GGLMD AF++I NGG+ TE YPY+A G+C+ R +N+ VV IDG++DVP
Sbjct: 64 NDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPA 123
Query: 255 NDEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGT--DGHLD 312
N E+ L +AVA+QPVSVA+EA G AF Y GVFTG CGTELDHGV VGYG DG
Sbjct: 124 NSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDGKA- 182
Query: 313 YWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
YW V+NSWGP WGE GYIR+E++ G CGIA+E SYP+K
Sbjct: 183 YWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVK 224
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 281 bits (718), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 136/218 (62%), Positives = 167/218 (76%), Gaps = 2/218 (0%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
LP+ VDWR+ GAV +KDQGQCGS WAFST+ AVEGIN+I TGDLISLSEQELVDC +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 198 N-QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQND 256
N +GC+GG M F+FII NGGI+TE +YPY A +G C+ + + V+ID YE+VP N+
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 257 EKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIV 316
E +LQ AVA QPVSVA+EA G FQ Y SG+FTG CGT +DH V VGYGT+G +DYWIV
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIV 180
Query: 317 RNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
+NSWG WGE GY+R++RNV G+CGIA + SYP+K
Sbjct: 181 KNSWGTTWGEEGYMRIQRNVG-GVGQCGIAKKASYPVK 217
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 274 bits (701), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 133/218 (61%), Positives = 162/218 (74%), Gaps = 2/218 (0%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
LP VDWR+ GAV +K QG+CG CWAFS + VEGIN+IVTG LISLSEQEL+DC +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 198 N-QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQND 256
N +GCNGG + F+FII NGGI+TEE+YPY A DG C+ + +N VTID YE+VP N+
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNN 120
Query: 257 EKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIV 316
E +LQ AV QPVSVA++A G AF+ Y SG+FTG CGT +DH V VGYGT+G +DYWIV
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIV 180
Query: 317 RNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
+NSW WGE GY+R+ RNV G CGIA PSYP+K
Sbjct: 181 KNSWDTTWGEEGYMRILRNVG-GAGTCGIATMPSYPVK 217
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 271 bits (692), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 147/335 (43%), Positives = 200/335 (59%), Gaps = 14/335 (4%)
Query: 20 DMSIIDYNRMHGNGGGNMSESHMRMMYEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNE 79
D SI+ Y++ S + ++ W++ H K Y + E+ RFEIFKDNL +++E
Sbjct: 1 DFSIVGYSQ-----DDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDE 55
Query: 80 HNAVARTYKVGLNKFADLTNDEFRNMYLGAKMERKKALRAGNGNAKSSDRYVYKHGDALP 139
N +Y +GLN+FADL+NDEF Y+G+ ++ + ++ + LP
Sbjct: 56 TNKKNNSYWLGLNEFADLSNDEFNEKYVGSLID-------ATIEQSYDEEFINEDIVNLP 108
Query: 140 ESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYNQ 199
E+VDWR KGAV PV+ QG CGSCWAFS V VEGIN+I TG L+ LSEQELVDC+++ +
Sbjct: 109 ENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR-SH 167
Query: 200 GCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKS 259
GC GG YA +++ KNG I YPYKA G+C + +V G V N+E +
Sbjct: 168 GCKGGYPPYALEYVAKNG-IHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGN 226
Query: 260 LQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVRNS 319
L A+A QPVSV +E+ G FQLYK G+F G CGT++D V AVGYG G Y +++NS
Sbjct: 227 LLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNS 286
Query: 320 WGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
WG WGE GYIR++R G CG+ YP K
Sbjct: 287 WGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 321
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 265 bits (676), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 127/218 (58%), Positives = 160/218 (73%), Gaps = 2/218 (0%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
LP VDWR+ GAV +K QG+CG WAFS + VEGIN+I +G LISLSEQEL+DC +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 198 N-QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQND 256
N +GC+GG + F+FII +GGI+TEE+YPY A DG CD ++ VTID YE+VP N+
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 257 EKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIV 316
E +LQ AV QPVSVA++A G AF+ Y SG+FTG CGT +DH ++ VGYGT+G +DYWIV
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGTEGGVDYWIV 180
Query: 317 RNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
+NSW WGE GY+R+ RNV G CGIA PSYP+K
Sbjct: 181 KNSWDTTWGEEGYMRILRNVG-GAGTCGIATMPSYPVK 217
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 264 bits (675), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 197/337 (58%), Gaps = 21/337 (6%)
Query: 20 DMSIIDYNRMHGNGGGNMSESHMRMMYEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNE 79
D SI+ Y++ S + ++E W++KH K Y + E+ RFEIFKDNLK+++E
Sbjct: 45 DFSIVGYSQ-----NDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDE 99
Query: 80 HNAVARTYKVGLNKFADLTNDEFRNMYLGAKMERKKALRAGN-GNAKSSDRYVYKHGDA- 137
N +Y +GLN FAD++NDEF+ Y G+ AGN + S V GD
Sbjct: 100 TNKKNNSYWLGLNVFADMSNDEFKEKYTGSI--------AGNYTTTELSYEEVLNDGDVN 151
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
+PE VDWR KGAV PVK+QG CGS WAFS V +E I +I TG+L SEQEL+DCD++
Sbjct: 152 IPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRR- 210
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
+ GCNGG A + + + GI YPY+ C K + DG V +E
Sbjct: 211 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 269
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVR 317
+L ++A+QPVSV +EA G FQLY+ G+F G CG ++DH V AVGYG +Y ++R
Sbjct: 270 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIR 325
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
NSWG WGE+GYIR++R G CG+ YP+K
Sbjct: 326 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 362
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 136/217 (62%), Positives = 159/217 (73%), Gaps = 10/217 (4%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
LPE +DWR KGAV PVK+QG+CGSCWAFSTV VE INQI TG+LISLSEQ+LVDC+K+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK- 59
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
N GC GG YA+++II NGGIDTE +YPYKA G C +K VV IDGY+ VP +E
Sbjct: 60 NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAKK---VVRIDGYKGVPHCNE 116
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVR 317
+L+KAVASQP VAI+A FQ YKSG+F+G CGT+L+HGV+ VGY DYWIVR
Sbjct: 117 NALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWK----DYWIVR 172
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
NSWG WGE GYIRM+R G CGIA P YP K
Sbjct: 173 NSWGRYWGEQGYIRMKR--VGGCGLCGIARLPYYPTK 207
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/217 (62%), Positives = 157/217 (72%), Gaps = 10/217 (4%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
LPE VDWRAKGAV P+K+QG+CGSCWAFSTV VE INQI TG+LISLSEQ+LVDC K+
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKK- 59
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
N GC GG D A+++II NGGIDTE +YPYKA G C +K VV IDG + VPQ +E
Sbjct: 60 NHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCRAAKK---VVRIDGCKGVPQCNE 116
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVR 317
+L+ AVASQP VAI+A FQ YK G+FTG CGT+L+HGV+ VGYG DYWIVR
Sbjct: 117 NALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGK----DYWIVR 172
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
NSWG WGE GY RM+R G CGIA P YP K
Sbjct: 173 NSWGRHWGEQGYTRMKR--VGGCGLCGIARLPFYPTK 207
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 254 bits (650), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 132/217 (60%), Positives = 154/217 (70%), Gaps = 10/217 (4%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
LPE +DWR KGAV PVK+QG CGSCWAFSTV VE INQI TG+LISLSEQELVDCDK+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK- 59
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
N GC GG +A+++II NGGIDT+ +YPYKA G C K VV+IDGY VP +E
Sbjct: 60 NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASK---VVSIDGYNGVPFCNE 116
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVR 317
+L++AVA QP +VAI+A FQ Y SG+F+G CGT+L+HGV VGY +YWIVR
Sbjct: 117 XALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY----QANYWIVR 172
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
NSWG WGE GYIRM R G CGIA P YP K
Sbjct: 173 NSWGRYWGEKGYIRMLR--VGGCGLCGIARLPYYPTK 207
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 245 bits (626), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 149/216 (68%), Gaps = 2/216 (0%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P+S+DWRAKGAV PVK+QG CGS WAFST+ VEGIN+IVTG+L+ LSEQELVDCDK ++
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDK-HS 60
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEK 258
GC GG + +++ NG + T + YPY+A C K V I GY+ VP N E
Sbjct: 61 YGCKGGYQTTSLQYVANNG-VHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXET 119
Query: 259 SLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVRN 318
S A+A+QP+SV +EAGG FQLYKSGVF G CGT+LDH V AVGYGT +Y I++N
Sbjct: 120 SFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKN 179
Query: 319 SWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
SWGP+WGE GY+R++R G CG+ YP K
Sbjct: 180 SWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK 215
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 238 bits (606), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 197/324 (60%), Gaps = 30/324 (9%)
Query: 42 MRMMYEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNEHNAVAR----TYKVGLNKFADL 97
+ + W H + Y + E+ R +++ N+K + HN R ++ + +N F D+
Sbjct: 4 LEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDM 62
Query: 98 TNDEFRNMYLGAKMERKKALRAGNGNAKSSDRYVYKHGDALPESVDWRAKGAVGPVKDQG 157
T++EFR + G + + + + + Y+ P SVDWR KG V PVK+QG
Sbjct: 63 TSEEFRQVMNGLQNRKPRKGKV------FQEPLFYE----APRSVDWREKGYVTPVKNQG 112
Query: 158 QCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCD-KQYNQGCNGGLMDYAFKFIIKN 216
QCGS WAFS GA+EG TG LISLSEQ LVDC + N+GCNGGLMDYAF+++ N
Sbjct: 113 QCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDN 172
Query: 217 GGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVASQ-PVSVAIEA 275
GG+D+EE YPY+AT+ SC N K + V G+ D+P+ EK+L KAVA+ P+SVAI+A
Sbjct: 173 GGLDSEESYPYEATEESCKYNPKYS-VANDAGFVDIPKQ-EKALMKAVATVGPISVAIDA 230
Query: 276 GGMAFQLYKSGV-FTGICGTE-LDHGVIAVGYG-----TDGHLDYWIVRNSWGPDWGESG 328
G +F YK G+ F C +E +DHGV+ VGYG +DG+ YW+V+NSWG +WG G
Sbjct: 231 GHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGN-KYWLVKNSWGEEWGMGG 289
Query: 329 YIRMERNVNTKTGKCGIAIEPSYP 352
Y++M ++ + CGIA SYP
Sbjct: 290 YVKMAKD---RRNHCGIASAASYP 310
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 238 bits (606), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 138/323 (42%), Positives = 195/323 (60%), Gaps = 28/323 (8%)
Query: 42 MRMMYEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNEHNAVAR----TYKVGLNKFADL 97
+ + W H + Y + E+ R +++ N+K + HN R ++ + +N F D+
Sbjct: 8 LEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDM 66
Query: 98 TNDEFRNMYLGAKMERKKALRAGNGNAKSSDRYVYKHGDALPESVDWRAKGAVGPVKDQG 157
T++EFR + G + + + + + Y+ P SVDWR KG V PVK+QG
Sbjct: 67 TSEEFRQVMNGFQNRKPRKGKV------FQEPLFYE----APRSVDWREKGYVTPVKNQG 116
Query: 158 QCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCD-KQYNQGCNGGLMDYAFKFIIKN 216
QCGS WAFS GA+EG TG LISLSEQ LVDC Q N+GCNGGLMDYAF+++ N
Sbjct: 117 QCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN 176
Query: 217 GGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVASQ-PVSVAIEA 275
GG+D+EE YPY+AT+ SC N K + V G+ D+P+ EK+L KAVA+ P+SVAI+A
Sbjct: 177 GGLDSEESYPYEATEESCKYNPKYS-VANDAGFVDIPKQ-EKALMKAVATVGPISVAIDA 234
Query: 276 GGMAFQLYKSGV-FTGICGTE-LDHGVIAVGYGTDG----HLDYWIVRNSWGPDWGESGY 329
G +F YK G+ F C +E +DHGV+ VGYG + + YW+V+NSWG +WG GY
Sbjct: 235 GHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 294
Query: 330 IRMERNVNTKTGKCGIAIEPSYP 352
++M ++ + CGIA SYP
Sbjct: 295 VKMAKD---RRNHCGIASAASYP 314
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 234 bits (598), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 147/216 (68%), Gaps = 6/216 (2%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
PES+DWR KGAV PVK+Q CGSCWAFSTV +EGIN+I+TG LISLSEQEL+DC+++ +
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR-S 60
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEK 258
GC+GG + ++++ N G+ TE +YPY+ G C K V I GY+ VP NDE
Sbjct: 61 HGCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEI 119
Query: 259 SLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVRN 318
SL +A+A+QPVSV ++ G FQ YK G++ G CGT DH V AVGYG Y +++N
Sbjct: 120 SLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGK----TYLLLKN 175
Query: 319 SWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
SWGP+WGE GYIR++R G CG+ +PIK
Sbjct: 176 SWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIK 211
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 228 bits (581), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 182/312 (58%), Gaps = 21/312 (6%)
Query: 49 WLVKHGKNYNALGEQERRFEIFKDNLKFVN----EHNAVARTYKVGLNKFADLTNDEFRN 104
W +GK Y E+ R I++ NLKFV EH+ +Y +G+N D+T++E
Sbjct: 15 WKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEV-- 72
Query: 105 MYLGAKMERKKALRAGNGNAKSSDRYVYKHGDALPESVDWRAKGAVGPVKDQGQCGSCWA 164
M +LR + + + Y LP+SVDWR KG V VK QG CG+ WA
Sbjct: 73 ------MSLMSSLRVPS-QWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGAAWA 125
Query: 165 FSTVGAVEGINQIVTGDLISLSEQELVDC--DKQYNQGCNGGLMDYAFKFIIKNGGIDTE 222
FS VGA+E ++ TG L+SLS Q LVDC +K N+GCNGG M AF++II N GID++
Sbjct: 126 FSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSD 185
Query: 223 EDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVASQ-PVSVAIEAGGMAFQ 281
YPYKA D C + K T Y ++P E L++AVA++ PVSV ++A +F
Sbjct: 186 ASYPYKAMDQKCQYDSK-YRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFF 244
Query: 282 LYKSGV-FTGICGTELDHGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVNTKT 340
LY+SGV + C ++HGV+ VGYG +YW+V+NSWG ++GE GYIRM RN K
Sbjct: 245 LYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN---KG 301
Query: 341 GKCGIAIEPSYP 352
CGIA PSYP
Sbjct: 302 NHCGIASFPSYP 313
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 228 bits (580), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 195/324 (60%), Gaps = 25/324 (7%)
Query: 39 ESHMRMMYEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNEHNAVA----RTYKVGLNKF 94
E + +E W H K YN ++ R I++ NLK+++ HN A TY++ +N
Sbjct: 4 EEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHL 63
Query: 95 ADLTNDEFRNMYLGAKMERKKALRAGNGNAKSSDR-YVYKHGDALPESVDWRAKGAVGPV 153
D+T++E +++ L+ +++S+D Y+ + P+SVD+R KG V PV
Sbjct: 64 GDMTSEEV--------VQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPV 115
Query: 154 KDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYNQGCNGGLMDYAFKFI 213
K+QGQCGSCWAFS+VGA+EG + TG L++LS Q LVDC + N GC GG M AF+++
Sbjct: 116 KNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMTNAFQYV 174
Query: 214 IKNGGIDTEEDYPYKATDGSC--DPNRKNAHVVTIDGYEDVPQNDEKSLQKAVASQ-PVS 270
KN GID+E+ YPY + SC +P K A GY ++P+ +EK+L++AVA PVS
Sbjct: 175 QKNRGIDSEDAYPYVGQEESCMYNPTGKAAKC---RGYREIPEGNEKALKRAVARVGPVS 231
Query: 271 VAIEAGGMAFQLYKSGVFTG-ICGTE-LDHGVIAVGYGTDGHLDYWIVRNSWGPDWGESG 328
VAI+A +FQ Y GV+ C ++ L+H V+AVGYG +WI++NSWG +WG G
Sbjct: 232 VAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKG 291
Query: 329 YIRMERNVNTKTGKCGIAIEPSYP 352
YI M RN K CGIA S+P
Sbjct: 292 YILMARN---KNNACGIANLASFP 312
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/270 (47%), Positives = 173/270 (64%), Gaps = 23/270 (8%)
Query: 91 LNKFADLTNDEFRNMYLGAKMERKKALRAGNGNAKSSDRYVYKHGDALPESVDWRAKGAV 150
+N F D+T++EFR + G + + + + + Y+ P SVDWR KG V
Sbjct: 2 MNAFGDMTSEEFRQVMNGFQNRKPRKGKV------FQEPLFYE----APRSVDWREKGYV 51
Query: 151 GPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCD-KQYNQGCNGGLMDYA 209
PVK+QGQCGSCWAFS GA+EG TG LISLSEQ LVDC Q N+GCNGGLMDYA
Sbjct: 52 TPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYA 111
Query: 210 FKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVASQ-P 268
F+++ NGG+D+EE YPY+AT+ SC N K + V G+ D+P+ EK+L KAVA+ P
Sbjct: 112 FQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDAGFVDIPKQ-EKALMKAVATVGP 169
Query: 269 VSVAIEAGGMAFQLYKSGV-FTGICGTE-LDHGVIAVGYGTDG----HLDYWIVRNSWGP 322
+SVAI+AG +F YK G+ F C +E +DHGV+ VGYG + + YW+V+NSWG
Sbjct: 170 ISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGE 229
Query: 323 DWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
+WG GY++M ++ + CGIA SYP
Sbjct: 230 EWGMGGYVKMAKD---RRNHCGIASAASYP 256
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 226 bits (575), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 151/219 (68%), Gaps = 5/219 (2%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDK-Q 196
LP VDWR++G V PVKDQ CGSCWAFST GA+EG + TG L+SLSEQEL+DC + +
Sbjct: 7 LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAE 66
Query: 197 YNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQND 256
NQ C+GG M+ AF++++ +GGI +E+ YPY A D C + VV I G++DVP+
Sbjct: 67 GNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRA-QSCEKVVKILGFKDVPRRS 125
Query: 257 EKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTD--GHLDYW 314
E +++ A+A PVS+AIEA M FQ Y GVF CGT+LDHGV+ VGYGTD D+W
Sbjct: 126 EAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKESKKDFW 185
Query: 315 IVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPI 353
I++NSWG WG GY+ M + + G+CG+ ++ S+P+
Sbjct: 186 IMKNSWGTGWGRDGYMYMAMH-KGEEGQCGLLLDASFPV 223
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/325 (42%), Positives = 182/325 (56%), Gaps = 22/325 (6%)
Query: 36 NMSESHMRMMYEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNEHNAVAR----TYKVGL 91
++ +S + + + + H K+Y++ E+ RR IFKDN+ + EHNA TY +
Sbjct: 17 SLPKSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAM 76
Query: 92 NKFADLTNDEFRNMYLGAKMERKKALRAGNGNAKSSDRYVYKHGDALPESVDWRAKGAVG 151
N+F D++ +EF K ++ K SS + L SVDWR+ AV
Sbjct: 77 NQFGDMSKEEFLAYVNRGKAQKPKHPENLRMPYVSSKK-------PLAASVDWRSN-AVS 128
Query: 152 PVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY-NQGCNGGLMDYAF 210
VKDQGQCGS W+FST GAVEG + G L SLSEQ L+DC Y N GC+GG MD AF
Sbjct: 129 EVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAF 188
Query: 211 KFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVASQ-PV 269
+I + GI +E YPY+A C + + V T+ GY D+P DE SL AV PV
Sbjct: 189 SYI-HDYGIMSESAYPYEAQGDYCRFDSSQS-VTTLSGYYDLPSGDENSLADAVGQAGPV 246
Query: 270 SVAIEAGGMAFQLYKSGVF-TGICG-TELDHGVIAVGYGTDGHLDYWIVRNSWGPDWGES 327
+VAI+A Q Y G+F C ++L+HGV+ VGYG+D DYWI++NSWG WGES
Sbjct: 247 AVAIDATD-ELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGES 305
Query: 328 GYIRMERNVNTKTGKCGIAIEPSYP 352
GY R RN CGIA SYP
Sbjct: 306 GYWRQVRNYGN---NCGIATAASYP 327
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 218 bits (556), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 141/217 (64%), Gaps = 2/217 (0%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
LPE+VDWR KGAV PV+ QG CGSCWAFS V VEGIN+I TG L+ LSEQELVDC+++
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
+ GC GG YA +++ KNG I YPYKA G+C + +V G V N+E
Sbjct: 60 SHGCKGGYPPYALEYVAKNG-IHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVR 317
+L A+A QPVSV +E+ G FQLYK G+F G CGT++DH V AVGYG G Y +++
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILIK 178
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
NSWG WGE GYIR++R G CG+ YP K
Sbjct: 179 NSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 218 bits (555), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/222 (54%), Positives = 153/222 (68%), Gaps = 13/222 (5%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCD-KQY 197
P SVDWR KG V PVK+QGQCGSCWAFS GA+EG TG LISLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
N+GCNGGLMDYAF+++ NGG+D+EE YPY+AT+ SC N K + V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ-E 119
Query: 258 KSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTE-LDHGVIAVGYGTDG----H 310
K+L KAVA+ P+SVAI+AG +F YK G+ F C +E +DHGV+ VGYG + +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 311 LDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
YW+V+NSWG +WG GY++M ++ + CGIA SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYP 218
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 218 bits (555), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/222 (54%), Positives = 153/222 (68%), Gaps = 13/222 (5%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCD-KQY 197
P SVDWR KG V PVK+QGQCGSCWAFS GA+EG TG LISLSEQ LVDC Q
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
N+GCNGGLMDYAF+++ NGG+D+EE YPY+AT+ SC N K + V G+ D+P+ E
Sbjct: 63 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ-E 120
Query: 258 KSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTE-LDHGVIAVGYGTDG----H 310
K+L KAVA+ P+SVAI+AG +F YK G+ F C +E +DHGV+ VGYG + +
Sbjct: 121 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 180
Query: 311 LDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
YW+V+NSWG +WG GY++M ++ + CGIA SYP
Sbjct: 181 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYP 219
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 218 bits (554), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/222 (54%), Positives = 153/222 (68%), Gaps = 13/222 (5%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCD-KQY 197
P SVDWR KG V PVK+QGQCGSCWAFS GA+EG TG LISLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
N+GCNGGLMDYAF+++ NGG+D+EE YPY+AT+ SC N K + V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDAGFVDIPKQ-E 119
Query: 258 KSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTE-LDHGVIAVGYGTDG----H 310
K+L KAVA+ P+SVAI+AG +F YK G+ F C +E +DHGV+ VGYG + +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 311 LDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
YW+V+NSWG +WG GY++M ++ + CGIA SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYP 218
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 217 bits (553), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 152/223 (68%), Gaps = 12/223 (5%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDK-Q 196
LP+SVDWR KG V PVK+Q QCGSCWAFS GA+EG TG L+SLSEQ LVDC + Q
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 197 YNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQND 256
NQGCNGG M AF+++ +NGG+D+EE YPY A D C +N+ V G+ V
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENS-VAQDTGFTVVAPGK 119
Query: 257 EKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTE-LDHGVIAVGYGTDG---- 309
EK+L KAVA+ P+SVA++AG +FQ YKSG+ F C ++ LDHGV+ VGYG +G
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 310 HLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
+ YW+V+NSWGP+WG +GY+++ ++ K CGIA SYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKD---KNNHCGIATAASYP 219
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 141/217 (64%), Gaps = 2/217 (0%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
LPE+VDWR KGAV PV+ QG CGSCWAFS V VEGIN+I TG L+ LSEQELVDC+++
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
+ GC GG YA +++ KNG I YPYKA G+C + +V G V N+E
Sbjct: 60 SHGCKGGYPPYALEYVAKNG-IHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVR 317
+L A+A QPVSV +E+ G FQLYK G+F G CGT+++H V AVGYG G Y +++
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYILIK 178
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
NSWG WGE GYIR++R G CG+ YP K
Sbjct: 179 NSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 181/317 (57%), Gaps = 23/317 (7%)
Query: 45 MYEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNEHNAV----ARTYKVGLNKFADLTND 100
++ W + K YN +Q RR I++ N+K + EHN TY +GLN+F D+T +
Sbjct: 4 LWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFE 62
Query: 101 EFRNMYLGAKMERKKALRAGNGNAKSSDRYVYKHGDALPESVDWRAKGAVGPVKDQGQCG 160
EF+ YL +M R + + ++++R A+P+ +DWR G V VKDQG CG
Sbjct: 63 EFKAKYL-TEMSRASDILSHGVPYEANNR-------AVPDKIDWRESGYVTEVKDQGNCG 114
Query: 161 SCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY-NQGCNGGLMDYAFKFIIKNGGI 219
S WAFST G +EG IS SEQ+LVDC + + N GC GGLM+ A++++ K G+
Sbjct: 115 SGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYL-KQFGL 173
Query: 220 DTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVASQ-PVSVAIEAGGM 278
+TE YPY A +G C N K V + G+ V E L+ V ++ P +VA++
Sbjct: 174 ETESSYPYTAVEGQCRYN-KQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVES- 231
Query: 279 AFQLYKSGVFTGICGTEL--DHGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNV 336
F +Y+SG++ + L +H V+AVGYGT G DYWIV+NSWG WGE GYIRM RN
Sbjct: 232 DFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRN- 290
Query: 337 NTKTGKCGIAIEPSYPI 353
+ CGIA S P+
Sbjct: 291 --RGNMCGIASLASLPM 305
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/217 (53%), Positives = 141/217 (64%), Gaps = 2/217 (0%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
LPESVDWRAKGAV PVK QG C SCWAFSTV VEGIN+I TG+L+ LSEQELVDCD Q
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQ- 59
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
+ GCN G + +++ +NG I YPY A +C N+ V +G V N+E
Sbjct: 60 SYGCNRGYQSTSLQYVAQNG-IHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNE 118
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVR 317
SL A+A QPVSV +E+ G FQ YK G+F G CGT++DH V AVGYG G Y +++
Sbjct: 119 GSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYILIK 178
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
NSWGP WGE+GYIR+ R G CG+ YPIK
Sbjct: 179 NSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPIK 215
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/222 (53%), Positives = 152/222 (68%), Gaps = 13/222 (5%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCD-KQY 197
P SVDWR KG V PVK+QGQCGS WAFS GA+EG TG LISLSEQ LVDC Q
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
N+GCNGGLMDYAF+++ NGG+D+EE YPY+AT+ SC N K + V G+ D+P+ E
Sbjct: 63 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ-E 120
Query: 258 KSLQKAVAS-QPVSVAIEAGGMAFQLYKSGV-FTGICGTE-LDHGVIAVGYGTDG----H 310
K+L KAVA+ P+SVAI+AG +F YK G+ F C +E +DHGV+ VGYG + +
Sbjct: 121 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 180
Query: 311 LDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
YW+V+NSWG +WG GY++M ++ + CGIA SYP
Sbjct: 181 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYP 219
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 215 bits (548), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/222 (53%), Positives = 152/222 (68%), Gaps = 13/222 (5%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCD-KQY 197
P SVDWR KG V PVK+QGQCGS WAFS GA+EG TG LISLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
N+GCNGGLMDYAF+++ NGG+D+EE YPY+AT+ SC N K + V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ-E 119
Query: 258 KSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTE-LDHGVIAVGYGTDG----H 310
K+L KAVA+ P+SVAI+AG +F YK G+ F C +E +DHGV+ VGYG + +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 311 LDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
YW+V+NSWG +WG GY++M ++ + CGIA SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYP 218
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 214 bits (546), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/222 (53%), Positives = 152/222 (68%), Gaps = 13/222 (5%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCD-KQY 197
P SVDWR KG V PVK+QGQCGS WAFS GA+EG TG LISLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
N+GCNGGLMDYAF+++ NGG+D+EE YPY+AT+ SC N K + V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ-E 119
Query: 258 KSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTE-LDHGVIAVGYGTDG----H 310
K+L KAVA+ P+SVAI+AG +F YK G+ F C +E +DHGV+ VGYG + +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 311 LDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
YW+V+NSWG +WG GY++M ++ + CGIA SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYP 218
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 214 bits (545), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 116/223 (52%), Positives = 151/223 (67%), Gaps = 12/223 (5%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDK-Q 196
LP+SVDWR KG V PVK+Q QCGS WAFS GA+EG TG L+SLSEQ LVDC + Q
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 197 YNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQND 256
NQGCNGG M AF+++ +NGG+D+EE YPY A D C +N+ V G+ V
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENS-VAQDTGFTVVAPGK 119
Query: 257 EKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTE-LDHGVIAVGYGTDG---- 309
EK+L KAVA+ P+SVA++AG +FQ YKSG+ F C ++ LDHGV+ VGYG +G
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 310 HLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
+ YW+V+NSWGP+WG +GY+++ ++ K CGIA SYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKD---KNNHCGIATAASYP 219
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/222 (53%), Positives = 151/222 (68%), Gaps = 13/222 (5%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCD-KQY 197
P SVDWR KG V PVK+QGQCGS WAFS GA+EG TG LISLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
N+GCNGGLMDYAF+++ NGG+D+EE YPY+AT+ SC N K + V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDAGFVDIPKQ-E 119
Query: 258 KSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTE-LDHGVIAVGYGTDGHLD-- 312
K+L KAVA+ P+SVAI+AG +F YK G+ F C +E +DHGV+ VGYG +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDD 179
Query: 313 --YWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
YW+V+NSWG +WG GY++M ++ + CGIA SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYP 218
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 141/223 (63%), Gaps = 10/223 (4%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P S+DWR KGAV VKDQG CG CWAF GA+EGI+ I TG LIS+SEQ++VDCD
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEK 258
GG D AF+++I NGGI ++ +YPY DG+CD N+ A IDGY +VP N
Sbjct: 62 X-XXGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKPIA--ARIDGYTNVP-NSSS 117
Query: 259 SLQKAVASQPVSVAIEAGGMAFQLYK-SGVFTGICGTE----LDHGVIAVGYGTDG-HLD 312
+L AVA QPVSV I +FQLY G+F G ++ +DH V+ VGYG++G + D
Sbjct: 118 ALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNAD 177
Query: 313 YWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIKK 355
YWIV+NSWG +WG GYI + RN N G C I SYP K
Sbjct: 178 YWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTKS 220
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 144/219 (65%), Gaps = 8/219 (3%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDC--DK 195
LP+SVDWR KG V VK QG CG+CWAFS VGA+E ++ TG L+SLS Q LVDC +K
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 196 QYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQN 255
N+GCNGG M AF++II N GID++ YPYKA D C + K T Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 119
Query: 256 DEKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTELDHGVIAVGYGTDGHLDY 313
E L++AVA++ PVSV ++A +F LY+SGV + C ++HGV+ VGYG +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
W+V+NSWG ++GE GYIRM RN K CGIA PSYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 144/219 (65%), Gaps = 8/219 (3%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDC--DK 195
LP+SVDWR KG V VK QG CG+CWAFS VGA+E ++ TG L+SLS Q LVDC +K
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 196 QYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQN 255
N+GCNGG M AF++II N GID++ YPYKA D C + K T Y ++P
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 122
Query: 256 DEKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTELDHGVIAVGYGTDGHLDY 313
E L++AVA++ PVSV ++A +F LY+SGV + C ++HGV+ VGYG +Y
Sbjct: 123 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 182
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
W+V+NSWG ++GE GYIRM RN K CGIA PSYP
Sbjct: 183 WLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 218
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 144/219 (65%), Gaps = 8/219 (3%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDC--DK 195
LP+SVDWR KG V VK QG CG+CWAFS VGA+E ++ TG L+SLS Q LVDC +K
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 196 QYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQN 255
N+GCNGG M AF++II N GID++ YPYKA D C + K T Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 119
Query: 256 DEKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTELDHGVIAVGYGTDGHLDY 313
E L++AVA++ PVSV ++A +F LY+SGV + C ++HGV+ VGYG +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
W+V+NSWG ++GE GYIRM RN K CGIA PSYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 144/219 (65%), Gaps = 8/219 (3%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDC--DK 195
LP+SVDWR KG V VK QG CG+CWAFS VGA+E ++ TG L+SLS Q LVDC +K
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 196 QYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQN 255
N+GCNGG M AF++II N GID++ YPYKA D C + K T Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 120
Query: 256 DEKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTELDHGVIAVGYGTDGHLDY 313
E L++AVA++ PVSV ++A +F LY+SGV + C ++HGV+ VGYG +Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
W+V+NSWG ++GE GYIRM RN K CGIA PSYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 216
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 144/219 (65%), Gaps = 8/219 (3%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDC--DK 195
LP+SVDWR KG V VK QG CG+CWAFS VGA+E ++ TG L+SLS Q LVDC +K
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 196 QYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQN 255
N+GCNGG M AF++II N GID++ YPYKA D C + K T Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCRKYTELPYG 119
Query: 256 DEKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTELDHGVIAVGYGTDGHLDY 313
E L++AVA++ PVSV ++A +F LY+SGV + C ++HGV+ VGYG +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
W+V+NSWG ++GE GYIRM RN K CGIA PSYP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARN---KGNHCGIASFPSYP 215
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 144/219 (65%), Gaps = 8/219 (3%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDC--DK 195
LP+SVDWR KG V VK QG CG+CWAFS VGA+E ++ TG L+SLS Q LVDC +K
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 196 QYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQN 255
N+GCNGG M AF++II N GID++ YPYKA D C + K T Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 120
Query: 256 DEKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTELDHGVIAVGYGTDGHLDY 313
E L++AVA++ PVSV ++A +F LY+SGV + C ++HGV+ VGYG +Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
W+V+NSWG ++GE GYIRM RN K CGIA PSYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 216
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 144/219 (65%), Gaps = 8/219 (3%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDC--DK 195
LP+SVDWR KG V VK QG CG+CWAFS VGA+E ++ TG L++LS Q LVDC +K
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 196 QYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQN 255
N+GCNGG M AF++II N GID++ YPYKA D C + K T Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 119
Query: 256 DEKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTELDHGVIAVGYGTDGHLDY 313
E L++AVA++ PVSV ++A +F LY+SGV + C ++HGV+ VGYG +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
W+V+NSWG ++GE GYIRM RN K CGIA PSYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 149/219 (68%), Gaps = 10/219 (4%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCD-KQY 197
P SVDWR KG V PVK+QGQCG+ +AFS GA+EG TG LISLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
N+GCNGGLMDYAF+++ NGG+D+EE YPY+AT+ SC N K + V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDVGFVDIPK-QE 119
Query: 258 KSLQKAVASQ-PVSVAIEAGGMAFQLYKSGVF--TGICGTELDHGVIAVGYG-TDGHLDY 313
K+L KAVA+ P+SVAI+AG +F YK G++ + + L+H ++ VGYG + Y
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKY 179
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
W+V+NSWG +WG GY++M ++ + CGIA SYP
Sbjct: 180 WLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYP 215
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 204 bits (520), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 144/220 (65%), Gaps = 8/220 (3%)
Query: 137 ALPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDC--D 194
ALP+SVDWR KG V VK QG CG+ WAFS VGA+E ++ TG L+SLS Q LVDC +
Sbjct: 2 ALPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE 61
Query: 195 KQYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQ 254
K N+GCNGG M AF++II N GID++ YPYKA D C + K T Y ++P
Sbjct: 62 KYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPY 120
Query: 255 NDEKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTELDHGVIAVGYGTDGHLD 312
E L++AVA++ PVSV ++A +F LY+SGV + C ++HGV+ VGYG +
Sbjct: 121 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKE 180
Query: 313 YWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
YW+V+NSWG ++GE GYIRM RN K CGIA PSYP
Sbjct: 181 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 217
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 204 bits (520), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 144/219 (65%), Gaps = 8/219 (3%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCD-KQ 196
LP+SVDWR KG V VK QG CG+CWAFS VGA+E ++ TG L+SLS Q LVDC K+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 197 Y-NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQN 255
Y N+GCNGG M AF++II N GID++ YPYKA D C + T Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSA-YRAATCRKYTELPYG 119
Query: 256 DEKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTELDHGVIAVGYGTDGHLDY 313
E L++AVA++ PVSV ++A +F LY+SGV + C ++HGV+ VGYG +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
W+V+NSWG ++GE GYIRM RN K CGIA PSYP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARN---KGNHCGIASFPSYP 215
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/217 (49%), Positives = 145/217 (66%), Gaps = 6/217 (2%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
+P S+DWR KGAV PV++QG CGSCW FS+V AVEGIN+IVTG L+SLSEQEL+DC+++
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR- 59
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
+ GC GG YA ++ + N GI + YPY+ C ++ V DG VP+N+E
Sbjct: 60 SYGCRGGFPLYALQY-VANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNE 118
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVR 317
++L + +A QPVS+ +EA G AFQ Y+ G+F G CGT +DH V AVGYG DY +++
Sbjct: 119 QALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGN----DYILIK 174
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
NSWG WGE GYIR++R G CG+ + +P K
Sbjct: 175 NSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK 211
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 143/219 (65%), Gaps = 8/219 (3%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDC--DK 195
LP+SVDWR KG V VK QG CG+ WAFS VGA+E ++ TG L+SLS Q LVDC +K
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 196 QYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQN 255
N+GCNGG M AF++II N GID++ YPYKA D C + K T Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 120
Query: 256 DEKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTELDHGVIAVGYGTDGHLDY 313
E L++AVA++ PVSV ++A +F LY+SGV + C ++HGV+ VGYG +Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
W+V+NSWG ++GE GYIRM RN K CGIA PSYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 216
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 143/219 (65%), Gaps = 8/219 (3%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDC--DK 195
LP+SVDWR KG V VK QG CG+ WAFS VGA+E ++ TG L+SLS Q LVDC +K
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 196 QYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQN 255
N+GCNGG M AF++II N GID++ YPYKA D C + K T Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 119
Query: 256 DEKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTELDHGVIAVGYGTDGHLDY 313
E L++AVA++ PVSV ++A +F LY+SGV + C ++HGV+ VGYG +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
W+V+NSWG ++GE GYIRM RN K CGIA PSYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 143/219 (65%), Gaps = 8/219 (3%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDC--DK 195
LP+SVDWR KG V VK QG CG+ WAFS VGA+E ++ TG L+SLS Q LVDC +K
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 196 QYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQN 255
N+GCNGG M AF++II N GID++ YPYKA D C + K T Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQYDSK-YRAATCSKYTELPYG 119
Query: 256 DEKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTELDHGVIAVGYGTDGHLDY 313
E L++AVA++ PVSV ++A +F LY+SGV + C ++HGV+ VGYG +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
W+V+NSWG ++GE GYIRM RN K CGIA PSYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 135/217 (62%), Gaps = 6/217 (2%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
+PE VDWR KGAV PVK+QG CGSCWAFS V +EGI +I TG+L SEQEL+DCD++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
+ GCNGG A + + + GI YPY+ C K + DG V +E
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVR 317
+L ++A+QPVSV +EA G FQLY+ G+F G CG ++DH V AVGYG +Y +++
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
NSWG WGE+GYIR++R G CG+ YP+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 135/217 (62%), Gaps = 6/217 (2%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
+PE VDWR KGAV PVK+QG CGSCWAFS V +EGI +I TG+L SEQEL+DCD++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
+ GCNGG A + + + GI YPY+ C K + DG V ++
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVR 317
+L ++A+QPVSV ++A G FQLY+ G+F G CG ++DH V AVGYG +Y +++
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
NSWG WGE+GYIR++R G CG+ YP+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 134/216 (62%), Gaps = 6/216 (2%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
PE VDWR KGAV PVK+QG CGSCWAFS V +EGI +I TG+L SEQEL+DCD++ +
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-S 60
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEK 258
GCNGG A + + + GI YPY+ C K + DG V ++
Sbjct: 61 YGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 259 SLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVRN 318
+L ++A+QPVSV ++A G FQLY+ G+F G CG ++DH V AVGYG +Y +++N
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIKN 175
Query: 319 SWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
SWG WGE+GYIR++R G CG+ YP+K
Sbjct: 176 SWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 134/217 (61%), Gaps = 6/217 (2%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
+PE VDWR KGAV PVK+QG CGS WAFS V +EGI +I TG+L SEQEL+DCD++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
+ GCNGG A + + + GI YPY+ C K + DG V +E
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVR 317
+L ++A+QPVSV +EA G FQLY+ G+F G CG ++DH V AVGYG +Y +++
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
NSWG WGE+GYIR++R G CG+ YP+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 146/219 (66%), Gaps = 12/219 (5%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P+SVD+R KG V PVK+QGQCGSCWAFS+VGA+EG + TG L++LS Q LVDC + N
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 60
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSC--DPNRKNAHVVTIDGYEDVPQND 256
GC GG M AF+++ KN GID+E+ YPY + SC +P K A GY ++P+ +
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKC---RGYREIPEGN 117
Query: 257 EKSLQKAVAS-QPVSVAIEAGGMAFQLYKSGVFTG-ICGTE-LDHGVIAVGYGTDGHLDY 313
EK+L++AVA PVSVAI+A +FQ Y GV+ C ++ L+H V+AVGYG +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKH 177
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
WI++NSWG +WG GYI+M RN K CGIA S+P
Sbjct: 178 WIIKNSWGENWGMGGYIKMARN---KNNACGIANLASFP 213
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 199 bits (505), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 134/217 (61%), Gaps = 6/217 (2%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
+PE VDWR KGAV PVK+QG CGS WAFS V +EGI +I TG+L SEQEL+DCD++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
+ GCNGG A + + + GI YPY+ C K + DG V +E
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVR 317
+L ++A+QPVSV +EA G FQLY+ G+F G CG ++DH V AVGYG +Y +++
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
NSWG WGE+GYIR++R G CG+ YP+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 145/219 (66%), Gaps = 12/219 (5%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P+SVD+R KG V PVK+QGQCGSCWAFS+VGA+EG + TG L++LS Q LVDC + N
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 60
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSC--DPNRKNAHVVTIDGYEDVPQND 256
GC GG M AF+++ KN GID+E+ YPY + SC +P K A GY ++P+ +
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKC---RGYREIPEGN 117
Query: 257 EKSLQKAVAS-QPVSVAIEAGGMAFQLYKSGVFTG-ICGTE-LDHGVIAVGYGTDGHLDY 313
EK+L++AVA PVSVAI+A +FQ Y GV+ C ++ L+H V+AVGYG +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKH 177
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
WI++NSWG +WG GYI M RN K CGIA S+P
Sbjct: 178 WIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 213
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 145/219 (66%), Gaps = 12/219 (5%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P+SVD+R KG V PVK+QGQCGSCWAFS+VGA+EG + TG L++LS Q LVDC + N
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 59
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSC--DPNRKNAHVVTIDGYEDVPQND 256
GC GG M AF+++ KN GID+E+ YPY + SC +P K A GY ++P+ +
Sbjct: 60 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKC---RGYREIPEGN 116
Query: 257 EKSLQKAVAS-QPVSVAIEAGGMAFQLYKSGVFTG-ICGTE-LDHGVIAVGYGTDGHLDY 313
EK+L++AVA PVSVAI+A +FQ Y GV+ C ++ L+H V+AVGYG +
Sbjct: 117 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKH 176
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
WI++NSWG +WG GYI M RN K CGIA S+P
Sbjct: 177 WIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 212
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 198 bits (504), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 145/219 (66%), Gaps = 12/219 (5%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P+SVD+R KG V PVK+QGQCGSCWAFS+VGA+EG + TG L++LS Q LVDC + N
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 62
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSC--DPNRKNAHVVTIDGYEDVPQND 256
GC GG M AF+++ KN GID+E+ YPY + SC +P K A GY ++P+ +
Sbjct: 63 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKC---RGYREIPEGN 119
Query: 257 EKSLQKAVAS-QPVSVAIEAGGMAFQLYKSGVFTG-ICGTE-LDHGVIAVGYGTDGHLDY 313
EK+L++AVA PVSVAI+A +FQ Y GV+ C ++ L+H V+AVGYG +
Sbjct: 120 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKH 179
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
WI++NSWG +WG GYI M RN K CGIA S+P
Sbjct: 180 WIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 215
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 198 bits (503), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 141/219 (64%), Gaps = 12/219 (5%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P+S+D+R KG V PVK+QGQCGSCWAFS+VGA+EG + TG L++LS Q LVDC + N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 60
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSC--DPNRKNAHVVTIDGYEDVPQND 256
GC GG M AF+++ +N GID+E+ YPY D SC +P K A GY ++P+ +
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKC---RGYREIPEGN 117
Query: 257 EKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGVF--TGICGTELDHGVIAVGYGTDGHLDY 313
EK+L++AVA PVSVAI+A +FQ Y GV+ L+H V+AVGYG +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKH 177
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
WI++NSWG WG GYI M RN K CGIA S+P
Sbjct: 178 WIIKNSWGESWGNKGYILMARN---KNNACGIANLASFP 213
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 198 bits (503), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 143/219 (65%), Gaps = 12/219 (5%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P+S+D+R KG V PVK+QGQCGSCWAFS+VGA+EG + TG L++L+ Q LVDC + N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSE-N 60
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSC--DPNRKNAHVVTIDGYEDVPQND 256
GC GG M AF+++ +N GID+E+ YPY D SC +P K A GY ++P+ +
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKC---RGYREIPEGN 117
Query: 257 EKSLQKAVAS-QPVSVAIEAGGMAFQLYKSGVF--TGICGTELDHGVIAVGYGTDGHLDY 313
E +L++AVA+ PVSVAI+A +FQ Y +GV+ L+H V+AVGYG +
Sbjct: 118 EAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKH 177
Query: 314 WIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
WI++NSWG WG +GYI M RN K CGIA S+P
Sbjct: 178 WIIKNSWGESWGNAGYILMARN---KNNACGIANLASFP 213
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 134/217 (61%), Gaps = 6/217 (2%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
+PE VDWR KGAV PVK+QG CGS WAFS V +EGI +I TG+L SEQEL+DCD++
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
+ GCNGG A + + + GI YPY+ C K + DG V ++
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 258 KSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVR 317
+L ++A+QPVSV ++A G FQLY+ G+F G CG ++DH V AVGYG +Y +++
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIK 354
NSWG WGE+GYIR++R G CG+ YP+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 144/218 (66%), Gaps = 12/218 (5%)
Query: 140 ESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYNQ 199
+SVD+R KG V PVK+QGQCGSCWAFS+VGA+EG + TG L++LS Q LVDC + N
Sbjct: 1 DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-ND 59
Query: 200 GCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSC--DPNRKNAHVVTIDGYEDVPQNDE 257
GC GG M AF+++ KN GID+E+ YPY + SC +P K A GY ++P+ +E
Sbjct: 60 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKC---RGYREIPEGNE 116
Query: 258 KSLQKAVASQ-PVSVAIEAGGMAFQLYKSGVFTG-ICGTE-LDHGVIAVGYGTDGHLDYW 314
K+L++AVA PVSVAI+A +FQ Y GV+ C ++ L+H V+AVGYG +W
Sbjct: 117 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 176
Query: 315 IVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
I++NSWG +WG GYI M RN K CGIA S+P
Sbjct: 177 IIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 211
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 174/328 (53%), Gaps = 18/328 (5%)
Query: 34 GGNMSESHMRMMYEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNEHNAVAR----TYKV 89
G + + + +E++ + ++Y E+ R +IF+ L+ EHN R +Y +
Sbjct: 10 GSALPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTL 69
Query: 90 GLNKFADLTNDEFRNMYLGAKMERKKALRAGNGNAKSSDRYVYKHGDALPESVDWRAKGA 149
G+N F D+T +E + G M L K+ + P S DWR +G
Sbjct: 70 GVNLFTDMTPEEMKAYTHGLIMPAD--LHKNGIPIKTREDLGLNASVRYPASFDWRDQGM 127
Query: 150 VGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLI--SLSEQELVDCDKQYNQGCNGGLMD 207
V PVK+QG CGS WAFS+ GA+E +I G S+SEQ+LVDC GC+GG M+
Sbjct: 128 VSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPN-ALGCSGGWMN 186
Query: 208 YAFKFIIKNGGIDTEEDYPYKATDGSC--DPNRKNAHVVTIDGYEDVPQNDEKSLQKAVA 265
AF ++ +NGGID+E YPY+ DG+C DPN+ A + GY + DE L VA
Sbjct: 187 DAFTYVAQNGGIDSEGAYPYEMADGNCHYDPNQVAAR---LSGYVYLSGPDENMLADMVA 243
Query: 266 SQ-PVSVAIEAGGMAFQLYKSGVF-TGICGT-ELDHGVIAVGYGTDGHLDYWIVRNSWGP 322
++ PV+VA +A F Y GV+ C T + H V+ VGYG + DYW+V+NSWG
Sbjct: 244 TKGPVAVAFDADD-PFGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGD 302
Query: 323 DWGESGYIRMERNVNTKTGKCGIAIEPS 350
WG GY ++ RN N G G+A P+
Sbjct: 303 GWGLDGYFKIARNANNHCGIAGVASVPT 330
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 138/225 (61%), Gaps = 14/225 (6%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
PES DW KG + VK QGQCGS WAFS GA+E + I TG+L+SLSEQEL+DC + +
Sbjct: 3 PESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE-S 61
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGY-------ED 251
+GC G +F++++K+GGI +E DYPYKA DG C N VTID Y E
Sbjct: 62 EGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDK-VTIDNYGVQILSNES 120
Query: 252 VPQNDEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFT-GICGTE--LDHGVIAVGYGTD 308
E SLQ V QP+SV+I+A F Y G++ G C + ++H V+ VGYG++
Sbjct: 121 TESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGSE 178
Query: 309 GHLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPI 353
+DYWI +NSWG DWG GYIR++RN G CG+ SYPI
Sbjct: 179 DGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPI 223
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/172 (58%), Positives = 124/172 (72%), Gaps = 6/172 (3%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCD-KQY 197
P SVDWR KG V PVK+QGQCGSCWAFS GA+EG TG LISLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
N+GCNGGLMDYAF+++ NGG+D+EE YPY+AT+ SC N K + V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ-E 119
Query: 258 KSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTE-LDHGVIAVGYG 306
K+L KAVA+ P+SVAI+AG +F YK G+ F C +E +DHGV+ VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 181 bits (460), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 137/224 (61%), Gaps = 17/224 (7%)
Query: 139 PESVDWRAKG-AVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
P S+DWR KG V PVK+QG CGSCW FST GA+E I TG ++SL+EQ+LVDC + +
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 198 -NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSC--DPNRKNAHVVTIDGYEDVPQ 254
N GC GGL AF++I N GI E+ YPYK D C P++ A V + ++
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDV---ANITM 118
Query: 255 NDEKSLQKAVA-SQPVSVAIEAGGMAFQLYKSGVFTGI----CGTELDHGVIAVGYGTDG 309
NDE+++ +AVA PVS A E F +Y+ G+++ +++H V+AVGYG +
Sbjct: 119 NDEEAMVEAVALYNPVSFAFEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEEN 177
Query: 310 HLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPI 353
+ YWIV+NSWGP WG +GY +ER N CG+A SYPI
Sbjct: 178 GIPYWIVKNSWGPQWGMNGYFLIERGKNM----CGLAACASYPI 217
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 123/172 (71%), Gaps = 6/172 (3%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCD-KQY 197
P SVDWR KG V PVK+QGQCGS WAFS GA+EG TG LISLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
N+GCNGGLMDYAF+++ NGG+D+EE YPY+AT+ SC N K + V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ-E 119
Query: 258 KSLQKAVASQ-PVSVAIEAGGMAFQLYKSGV-FTGICGTE-LDHGVIAVGYG 306
K+L KAVA+ P+SVAI+AG +F YK G+ F C +E +DHGV+ VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 128/203 (63%), Gaps = 7/203 (3%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P +VDWRA+GAV VKDQGQCGSCWAFS +G VE + L +LSEQ LV CDK +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-D 60
Query: 199 QGCNGGLMDYAFKFIIK--NGGIDTEEDYPYKATDGSCDPNRKNAHVV--TIDGYEDVPQ 254
GC+GGLM+ AF++I++ NG + TE+ YPY + +G P + H V TI G+ ++PQ
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 255 NDEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYW 314
++ + + PV+VA++A ++ Y GV T +LDHGV+ VGY + YW
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYW 178
Query: 315 IVRNSWGPDWGESGYIRMERNVN 337
I++NSW WGE GYIR+ + N
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSN 201
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 127/203 (62%), Gaps = 7/203 (3%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P +VDWR KGAV PVKDQGQCGSCWAFST+G +EG Q+ L+SLSEQ LV CD +
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDT-ID 60
Query: 199 QGCNGGLMDYAFKFII-KNGG-IDTEEDYPYKATDGSCDPNRKNAHVV--TIDGYEDVPQ 254
GC GGLMD AF +I+ NGG + TE YPY + +G + N H + I + D+PQ
Sbjct: 61 FGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQ 120
Query: 255 NDEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYW 314
+++ + P+++A++A +F Y G+ T +LDHGV+ VGY + YW
Sbjct: 121 DEDAIAAYLAENGPLAIAVDA--TSFMDYNGGILTSCTSEQLDHGVLLVGYNDASNPPYW 178
Query: 315 IVRNSWGPDWGESGYIRMERNVN 337
I++NSW WGE GYIR+E+ N
Sbjct: 179 IIKNSWSNMWGEDGYIRIEKGTN 201
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 127/203 (62%), Gaps = 7/203 (3%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P +VDWRA+GAV VKDQGQCGSCWAFS +G VE + L +LSEQ LV CDK +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-D 60
Query: 199 QGCNGGLMDYAFKFIIK--NGGIDTEEDYPYKATDGSCDPNRKNAHVV--TIDGYEDVPQ 254
GC+GGLM+ AF++I++ NG + TE+ YPY + +G P + H V TI G+ ++PQ
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 255 NDEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYW 314
++ + + PV+VA++A ++ Y GV T LDHGV+ VGY + YW
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEALDHGVLLVGYNDSAAVPYW 178
Query: 315 IVRNSWGPDWGESGYIRMERNVN 337
I++NSW WGE GYIR+ + N
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSN 201
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 128/203 (63%), Gaps = 7/203 (3%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P +VDWRA+GAV VKDQGQCGSCWAFS +G VE + L +L+EQ LV CDK +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-D 60
Query: 199 QGCNGGLMDYAFKFIIK--NGGIDTEEDYPYKATDGSCDPNRKNAHVV--TIDGYEDVPQ 254
GC+GGLM+ AF++I++ NG + TE+ YPY + +G P + H V TI G+ ++PQ
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 255 NDEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYW 314
++ + + PV+VA++A ++ Y GV T +LDHGV+ VGY + YW
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYW 178
Query: 315 IVRNSWGPDWGESGYIRMERNVN 337
I++NSW WGE GYIR+ + N
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSN 201
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 128/203 (63%), Gaps = 7/203 (3%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P +VDWRA+GAV VKDQGQCGSCWAFS +G VE + L +L+EQ LV CDK +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-D 60
Query: 199 QGCNGGLMDYAFKFIIK--NGGIDTEEDYPYKATDGSCDPNRKNAHVV--TIDGYEDVPQ 254
GC+GGLM+ AF++I++ NG + TE+ YPY + +G P + H V TI G+ ++PQ
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 255 NDEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYW 314
++ + + PV+VA++A ++ Y GV T +LDHGV+ VGY + YW
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYW 178
Query: 315 IVRNSWGPDWGESGYIRMERNVN 337
I++NSW WGE GYIR+ + N
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSN 201
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 127/227 (55%), Gaps = 22/227 (9%)
Query: 141 SVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYNQG 200
+ DWR V PVKDQ CGSCWAFS++G+VE I LI+LSEQELVDC + N G
Sbjct: 21 AYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NYG 79
Query: 201 CNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVT----IDGYEDVPQND 256
CNGGL++ AF+ +I+ GGI + DYPY +D PN N T I Y VP N
Sbjct: 80 CNGGLINNAFEDMIELGGICPDGDYPY-VSDA---PNLCNIDRCTEKYGIKNYLSVPDNK 135
Query: 257 EKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLD---- 312
K + + +SVA+ F YK G+F G CG +L+H V+ VG+G ++
Sbjct: 136 LKEALRFLGPISISVAVSDD---FAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTK 192
Query: 313 ------YWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPI 353
Y+I++NSWG WGE G+I +E + + KCG+ + P+
Sbjct: 193 KGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 239
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 127/235 (54%), Gaps = 18/235 (7%)
Query: 132 YKHGDALPESV--DWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQE 189
YK DA + + DWR G V PVKDQ CGSCWAFS+VG+VE I L SEQE
Sbjct: 12 YKPADAKLDRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQE 71
Query: 190 LVDCDKQYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKAT-DGSCDPNRKNAHVVTIDG 248
LVDC + N GC GG + AF +I GG+ +++DYPY + +C+ R N TI
Sbjct: 72 LVDCSVK-NNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNER-YTIKS 129
Query: 249 YEDVPQNDEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTD 308
Y +P + K + + P+S++I A F Y+ G + G CG +H VI VGYG
Sbjct: 130 YVSIPDDKFKEALRYLG--PISISIAASD-DFAFYRGGFYDGECGAAPNHAVILVGYGMK 186
Query: 309 -------GHLD---YWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPI 353
G ++ Y+I++NSWG DWGE GYI +E + N C I E P+
Sbjct: 187 DIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 126/227 (55%), Gaps = 22/227 (9%)
Query: 141 SVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYNQG 200
+ DWR V PVKDQ CGS WAFS++G+VE I LI+LSEQELVDC + N G
Sbjct: 20 AYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NYG 78
Query: 201 CNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVT----IDGYEDVPQND 256
CNGGL++ AF+ +I+ GGI + DYPY +D PN N T I Y VP N
Sbjct: 79 CNGGLINNAFEDMIELGGICPDGDYPY-VSDA---PNLCNIDRCTEKYGIKNYLSVPDNK 134
Query: 257 EKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLD---- 312
K + + +SVA+ F YK G+F G CG +L+H V+ VG+G ++
Sbjct: 135 LKEALRFLGPISISVAVSDD---FAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTK 191
Query: 313 ------YWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPI 353
Y+I++NSWG WGE G+I +E + + KCG+ + P+
Sbjct: 192 KGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 238
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 123/211 (58%), Gaps = 12/211 (5%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P DWR+KGAV VKDQG CGSCWAFS G VEG + G L+SLSEQEL+DCDK +
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM-D 60
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEK 258
+ C GGL A+ I GG++TE+DY Y+ SC + + A V D E + QN++K
Sbjct: 61 KACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVE-LSQNEQK 119
Query: 259 SLQKAVASQPVSVAIEAGGMAFQLYKSGV---FTGICGTEL-DHGVIAVGYGTDGHLDYW 314
P+SVAI A GM Q Y+ G+ +C L DH V+ VGYG + +W
Sbjct: 120 LAAWLAKRGPISVAINAFGM--QFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFW 177
Query: 315 IVRNSWGPDWGESGYIRMERNVNTKTGKCGI 345
++NSWG DWGE GY + R +G CG+
Sbjct: 178 AIKNSWGTDWGEKGYYYLHRG----SGACGV 204
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 143/299 (47%), Gaps = 24/299 (8%)
Query: 46 YEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNEHNAVARTYKVGLNKFADLTNDEFRNM 105
+E + K+Y ++E + F +++K+V + +N +DL+ DEF+N
Sbjct: 8 FEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG-------AINHLSDLSLDEFKNR 60
Query: 106 YLGAKMERKKALRAGNGNAKSSDRYVYKHGDALPESVDWRAKGAVGPVKDQGQCGSCWAF 165
+L + + + NA+++ + +G+A P +D R V P++ QG CGS WAF
Sbjct: 61 FLMSAEAFEHLKTQFDLNAETNACSI--NGNA-PAEIDLRQMRTVTPIRMQGGCGSAWAF 117
Query: 166 STVGAVEGINQIVTGDLISLSEQELVDCDKQYNQGCNGGLMDYAFKFIIKNGGIDTEEDY 225
S V A E + L+EQELVDC Q+ GC+G + ++I NG + E Y
Sbjct: 118 SGVAATESAYLAYRDQSLDLAEQELVDCASQH--GCHGDTIPRGIEYIQHNGVVQ-ESYY 174
Query: 226 PYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVASQPVSVAIEAGGMAFQLYKS 285
Y A + SC R NA I Y + + +++A+A ++A+ G ++
Sbjct: 175 RYVAREQSC--RRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRH 232
Query: 286 GVFTGICGTELD-------HGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVN 337
+ G + D H V VGY +DYWIVRNSW +WG++GY N++
Sbjct: 233 --YDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANID 289
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 119/227 (52%), Gaps = 24/227 (10%)
Query: 137 ALPESVDWR-AKGA--VGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLIS--LSEQELV 191
+LPES DWR +G V PV++Q CGSC++F+++G +E +I+T + + LS QE+V
Sbjct: 205 SLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVV 264
Query: 192 DCDKQYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYED 251
C Y QGC+GG ++ G+ E +PY ATD C P + + Y
Sbjct: 265 SCSP-YAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSEYYYV 323
Query: 252 VPQ----NDEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVF--TGICGT----EL-DHGV 300
N+ + V P++VA E F Y SG++ TG+ EL +H V
Sbjct: 324 GGFYGGCNEALMKLELVKHGPMAVAFEVHD-DFLHYHSGIYHHTGLSDPFNPFELTNHAV 382
Query: 301 IAVGYGTD--GHLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGI 345
+ VGYG D LDYWIV+NSWG WGESGY R+ R T +C I
Sbjct: 383 LLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRG----TDECAI 425
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 103/197 (52%), Gaps = 10/197 (5%)
Query: 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQY 197
+P +D R+ V P++ QG CGSCWAFS V A E + LSEQELVDC Q+
Sbjct: 11 VPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQH 70
Query: 198 NQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDE 257
GC+G + ++I +NG ++ E YPY A + C R N+ I Y + D
Sbjct: 71 --GCHGDTIPRGIEYIQQNGVVE-ERSYPYVAREQRC--RRPNSQHYGISNYCQIYPPDV 125
Query: 258 KSLQKAVASQPVSVAIEAG---GMAFQLYK-SGVFTGICGTELD-HGVIAVGYGTDGHLD 312
K +++A+ ++A+ G AFQ Y + G + + H V VGYG+ D
Sbjct: 126 KQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGSTQGDD 185
Query: 313 YWIVRNSWGPDWGESGY 329
YWIVRNSW WG+SGY
Sbjct: 186 YWIVRNSWDTTWGDSGY 202
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 144/304 (47%), Gaps = 45/304 (14%)
Query: 68 EIFKDNLKFVNEHNAVARTYKVGLNKFADLTNDEFRNMYLGAKMER-----KKALRAGNG 122
++K + FV NA+ +++ T E+ + LG + R +K R
Sbjct: 142 RLYKYDHNFVKAINAIQKSWTA-------TTYMEYETLTLGDMIRRSGGHSRKIPRPKPA 194
Query: 123 --NAKSSDRYVYKHGDALPESVDWR---AKGAVGPVKDQGQCGSCWAFSTVGAVEGINQI 177
A+ + ++ LP S DWR V PV++Q CGSC++F+++G +E +I
Sbjct: 195 PLTAEIQQKILF-----LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRI 249
Query: 178 VTGDLIS--LSEQELVDCDKQYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCD 235
+T + + LS QE+V C QY QGC GG ++ G+ E +PY TD C
Sbjct: 250 LTNNSQTPILSPQEVVSCS-QYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCK 308
Query: 236 PNRKNAHVVTIDGYEDVPQ-----NDEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVF-- 288
+++ Y V N+ + V P++VA E F YK G++
Sbjct: 309 -MKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYD-DFLHYKKGIYHH 366
Query: 289 TGICGT----EL-DHGVIAVGYGTDGH--LDYWIVRNSWGPDWGESGYIRMERNVNTKTG 341
TG+ EL +H V+ VGYGTD +DYWIV+NSWG WGE+GY R+ R T
Sbjct: 367 TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRG----TD 422
Query: 342 KCGI 345
+C I
Sbjct: 423 ECAI 426
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 100/206 (48%), Gaps = 14/206 (6%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P +D R V P++ QG CGSCWAFS V A E + L+EQELVDC Q+
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQH- 69
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEK 258
GC+G + ++I NG + E Y Y A + SC R NA I Y + +
Sbjct: 70 -GCHGDTIPRGIEYIQHNGVVQ-ESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNAN 125
Query: 259 SLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELD-------HGVIAVGYGTDGHL 311
+++A+A ++A+ G ++ + G + D H V VGY +
Sbjct: 126 KIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQGV 183
Query: 312 DYWIVRNSWGPDWGESGYIRMERNVN 337
DYWIVRNSW +WG++GY N++
Sbjct: 184 DYWIVRNSWDTNWGDNGYGYFAANID 209
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 100/206 (48%), Gaps = 14/206 (6%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P +D R V P++ QG CGSCWAFS V A E + L+EQELVDC Q+
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQH- 69
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEK 258
GC+G + ++I NG + E Y Y A + SC R NA I Y + +
Sbjct: 70 -GCHGDTIPRGIEYIQHNGVVQ-ESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNVN 125
Query: 259 SLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELD-------HGVIAVGYGTDGHL 311
+++A+A ++A+ G ++ + G + D H V VGY +
Sbjct: 126 KIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQGV 183
Query: 312 DYWIVRNSWGPDWGESGYIRMERNVN 337
DYWIVRNSW +WG++GY N++
Sbjct: 184 DYWIVRNSWDTNWGDNGYGYFAANID 209
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 99/206 (48%), Gaps = 14/206 (6%)
Query: 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198
P +D R V P++ QG CGS WAFS V A E + L+EQELVDC Q+
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQH- 69
Query: 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEK 258
GC+G + ++I NG + E Y Y A + SC R NA I Y + +
Sbjct: 70 -GCHGDTIPRGIEYIQHNGVVQ-ESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNAN 125
Query: 259 SLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELD-------HGVIAVGYGTDGHL 311
+++A+A ++A+ G ++ + G + D H V VGY +
Sbjct: 126 KIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQGV 183
Query: 312 DYWIVRNSWGPDWGESGYIRMERNVN 337
DYWIVRNSW +WG++GY N++
Sbjct: 184 DYWIVRNSWDTNWGDNGYGYFAANID 209
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 108/238 (45%), Gaps = 44/238 (18%)
Query: 138 LPESVDWRAK----GAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTG--DLISLSEQELV 191
+P S D R K ++ ++DQ +CGSCWAF V A+ + I +G + LS +L+
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 192 DCDKQYNQGCNGGLMDYAFKFIIKNGGIDTE--------EDYPYKA----TDGSCDP--- 236
C + GC GG++ A+ + +K G + E YP+ T G P
Sbjct: 63 SCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGS 122
Query: 237 ------------NRKNAHVVTIDGYEDVP----QNDEKSLQKAVASQPVSVAIEAGGMA- 279
+K T D + +NDEK++QK + +EAG
Sbjct: 123 KIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYG---PVEAGFTVY 179
Query: 280 --FQLYKSGVFTGICGTEL-DHGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMER 334
F YKSG++ I G L H + +G+G + YW++ NSW DWGE+GY R+ R
Sbjct: 180 EDFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVR 237
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 109/265 (41%), Gaps = 42/265 (15%)
Query: 122 GNAKSSDRYVYKHGDALPESVDWRAKGAVGP----VKDQGQCGSCWAFSTVGAVEGINQI 177
G K R ++ LP S D R + P ++DQG CGSCWAF V A+ I
Sbjct: 48 GGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICI 107
Query: 178 VTGDLISL---SEQELVDCDKQYNQGCNGGLMDYAFKFIIKNGGID--TEEDY----PYK 228
T +S+ +E L C GCNGG A+ F + G + E + PY
Sbjct: 108 HTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYS 167
Query: 229 A------TDGSCDP-----NRKNAHVVTIDGYEDVPQNDE----KSLQKAVASQPVSVAI 273
+GS P + + GY + D+ S + + + + I
Sbjct: 168 IPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEI 227
Query: 274 EAGGMA---------FQLYKSGVFTGICGTELD-HGVIAVGYGTDGHLDYWIVRNSWGPD 323
G F LYKSGV+ + G + H + +G+G + YW+V NSW D
Sbjct: 228 YKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTD 287
Query: 324 WGESGYIRMERNVNTKTGKCGIAIE 348
WG++G+ ++ R + CGI E
Sbjct: 288 WGDNGFFKILRGQD----HCGIESE 308
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 104/249 (41%), Gaps = 42/249 (16%)
Query: 138 LPESVDWRAKGAVGP----VKDQGQCGSCWAFSTVGAVEGINQIVTGDLISL---SEQEL 190
LP S D R + P ++DQG CGSCWAF V A+ I T +S+ +E L
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 191 VDCDKQYNQGCNGGLMDYAFKFIIKNGGID--TEEDY----PYKA------TDGSCDP-- 236
C GCNGG A+ F + G + E + PY +GS P
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 122
Query: 237 ---NRKNAHVVTIDGYEDVPQNDE----KSLQKAVASQPVSVAIEAGGMA---------F 280
+ + GY + D+ S + + + + I G F
Sbjct: 123 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 182
Query: 281 QLYKSGVFTGICGTELD-HGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVNTK 339
LYKSGV+ + G + H + +G+G + YW+V NSW DWG++G+ ++ R +
Sbjct: 183 LLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQD-- 240
Query: 340 TGKCGIAIE 348
CGI E
Sbjct: 241 --HCGIESE 247
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 104/249 (41%), Gaps = 42/249 (16%)
Query: 138 LPESVDWRAKGAVGP----VKDQGQCGSCWAFSTVGAVEGINQIVTGDLISL---SEQEL 190
LP S D R + P ++DQG CGSCWAF V A+ I T +S+ +E L
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 191 VDCDKQYNQGCNGGLMDYAFKFIIKNGGID--TEEDY----PYKA------TDGSCDP-- 236
C GCNGG A+ F + G + E + PY +GS P
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 237 ---NRKNAHVVTIDGYEDVPQNDE----KSLQKAVASQPVSVAIEAGGMA---------F 280
+ + GY + D+ S + + + + I G F
Sbjct: 121 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 180
Query: 281 QLYKSGVFTGICGTELD-HGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVNTK 339
LYKSGV+ + G + H + +G+G + YW+V NSW DWG++G+ ++ R +
Sbjct: 181 LLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQD-- 238
Query: 340 TGKCGIAIE 348
CGI E
Sbjct: 239 --HCGIESE 245
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 104/249 (41%), Gaps = 42/249 (16%)
Query: 138 LPESVDWRAKGAVGP----VKDQGQCGSCWAFSTVGAVEGINQIVTGDLISL---SEQEL 190
LP S D R + P ++DQG CGSCWAF V A+ I T +S+ +E L
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 191 VDCDKQYNQGCNGGLMDYAFKFIIKNGGID--TEEDY----PYKA------TDGSCDP-- 236
C GCNGG A+ F + G + E + PY +GS P
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 121
Query: 237 ---NRKNAHVVTIDGYEDVPQNDE----KSLQKAVASQPVSVAIEAGGMA---------F 280
+ + GY + D+ S + + + + I G F
Sbjct: 122 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 181
Query: 281 QLYKSGVFTGICGTELD-HGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVNTK 339
LYKSGV+ + G + H + +G+G + YW+V NSW DWG++G+ ++ R +
Sbjct: 182 LLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQD-- 239
Query: 340 TGKCGIAIE 348
CGI E
Sbjct: 240 --HCGIESE 246
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 105/260 (40%), Gaps = 46/260 (17%)
Query: 138 LPESVD----WRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISL---SEQEL 190
LPES D W + ++DQG CGSCWAF V A+ I T +++ +E L
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 191 VDCDKQYNQGCNGGLMDYAFKFIIK----NGGIDTEEDYPYKATDGSCDPNRKNAHVVTI 246
C Q GCNGG A+ F + +GG+ T C+ + N
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCE-HHVNGARPPC 119
Query: 247 DGYEDVPQ---------------------------NDEKSLQKAV-ASQPVSVAIEAGGM 278
G D P+ + EK + + + PV A
Sbjct: 120 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS- 178
Query: 279 AFQLYKSGVFTGICGTEL-DHGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVN 337
F YKSGV+ G + H + +G+G + + YW+V NSW DWG++G+ ++ R N
Sbjct: 179 DFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGEN 238
Query: 338 TKTGKCGIAIEPSYPIKKGQ 357
CGI E I + Q
Sbjct: 239 ----HCGIESEIVAGIPRTQ 254
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 105/260 (40%), Gaps = 46/260 (17%)
Query: 138 LPESVD----WRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISL---SEQEL 190
LPES D W + ++DQG CGSCWAF V A+ I T +++ +E L
Sbjct: 7 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 66
Query: 191 VDCDKQYNQGCNGGLMDYAFKFIIK----NGGIDTEEDYPYKATDGSCDPNRKNAHVVTI 246
C Q GCNGG A+ F + +GG+ T C+ + N
Sbjct: 67 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCE-HHVNGARPPC 125
Query: 247 DGYEDVPQ---------------------------NDEKSLQKAV-ASQPVSVAIEAGGM 278
G D P+ + EK + + + PV A
Sbjct: 126 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS- 184
Query: 279 AFQLYKSGVFTGICGTEL-DHGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVN 337
F YKSGV+ G + H + +G+G + + YW+V NSW DWG++G+ ++ R N
Sbjct: 185 DFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGEN 244
Query: 338 TKTGKCGIAIEPSYPIKKGQ 357
CGI E I + Q
Sbjct: 245 ----HCGIESEIVAGIPRTQ 260
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 124/326 (38%), Gaps = 61/326 (18%)
Query: 72 DNLKFVNEHNAVARTYKVGLNKFADLTNDEFRNMYLGAKMERKKALRAGNGNAKSSDRYV 131
D + ++N+ N T++ G RN Y KK G K +R
Sbjct: 12 DMINYINKQNT---TWQAG------------RNFYNVDISYLKKLCGTVLGGPKLPERVG 56
Query: 132 YKHGDALPESVD----WRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISL-- 185
+ LPES D W + ++DQG CGS WAF V A+ I T +++
Sbjct: 57 FSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEV 116
Query: 186 -SEQELVDCDKQYNQGCNGGLMDYAFKFIIK----NGGIDTEEDYPYKATDGSCDPNRKN 240
+E L C Q GCNGG A+ F + +GG+ T C+ + N
Sbjct: 117 SAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCE-HHVN 175
Query: 241 AHVVTIDGYEDVPQ---------------------------NDEKSLQKAVASQ-PVSVA 272
G D P+ + EK + + PV A
Sbjct: 176 GARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGA 235
Query: 273 IEAGGMAFQLYKSGVFTGICGTEL-DHGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIR 331
F YKSGV+ G + H + +G+G + + YW+V NSW DWG++G+ +
Sbjct: 236 FTVFS-DFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFK 294
Query: 332 MERNVNTKTGKCGIAIEPSYPIKKGQ 357
+ R N CGI E I + Q
Sbjct: 295 ILRGEN----HCGIESEIVAGIPRTQ 316
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 109/268 (40%), Gaps = 37/268 (13%)
Query: 110 KMERKKALRAGNGNAKSSDRYVYKHGDA---LPESVD----WRAKGAVGPVKDQGQCGSC 162
+ +R + N NA + + +A LP S D W + + DQ CGSC
Sbjct: 41 EAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSC 100
Query: 163 WAFSTVGAVEGINQIVTG-DLISLSEQELVDCDKQYNQGCNGGLMDYAFKFIIKNGGI-D 220
WA + A+ + G + +S +L+ C GCNGG D A+ + G + D
Sbjct: 101 WAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSD 160
Query: 221 TEEDYPY-------KATDGSCDPNRKNAHVVTIDGYEDVP---------------QNDEK 258
+ YP+ K+ +G ++ N D D P Q ++
Sbjct: 161 YCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDD 220
Query: 259 SLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELD-HGVIAVGYGTDGHLDYWIVR 317
+++ P VA + F Y SGV+ + G L H V VG+GT + YW +
Sbjct: 221 YMRELFFRGPFEVAFDVY-EDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIA 279
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGI 345
NSW +WG GY + R + +CGI
Sbjct: 280 NSWNTEWGMDGYFLIRRG----SSECGI 303
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 100/251 (39%), Gaps = 46/251 (18%)
Query: 138 LPESVDWRAKGAVGP----VKDQGQCGSCWAFSTVGAVEGINQIVTGDLISL---SEQEL 190
LP S D R + P ++DQG CGS WAF V A+ I T +S+ +E L
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 191 VDCDKQYNQGCNGGLMDYAFKFIIKNGGIDT----------------------------- 221
C GCNGG A+ F + G +
Sbjct: 67 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCT 126
Query: 222 -EEDYP--YKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVASQPVSVAIEAGGM 278
E D P K + P K + Y V +++ + + + PV A
Sbjct: 127 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSY-SVSNSEKDIMAEIYKNGPVEGAFSVYS- 184
Query: 279 AFQLYKSGVFTGICGTELD-HGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVN 337
F LYKSGV+ + G + H + +G+G + YW+V NSW DWG++G+ ++ R +
Sbjct: 185 DFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQD 244
Query: 338 TKTGKCGIAIE 348
CGI E
Sbjct: 245 ----HCGIESE 251
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 109/268 (40%), Gaps = 37/268 (13%)
Query: 110 KMERKKALRAGNGNAKSSDRYVYKHGDA---LPESVD----WRAKGAVGPVKDQGQCGSC 162
+ +R + N NA + + +A LP S D W + + DQ CGSC
Sbjct: 63 EAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSC 122
Query: 163 WAFSTVGAVEGINQIVTG-DLISLSEQELVDCDKQYNQGCNGGLMDYAFKFIIKNGGI-D 220
WA + A+ + G + +S +L+ C GCNGG D A+ + G + D
Sbjct: 123 WAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSD 182
Query: 221 TEEDYPY-------KATDGSCDPNRKNAHVVTIDGYEDVP---------------QNDEK 258
+ YP+ K+ +G ++ N + D P Q ++
Sbjct: 183 YCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDD 242
Query: 259 SLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELD-HGVIAVGYGTDGHLDYWIVR 317
+++ P VA + F Y SGV+ + G L H V VG+GT + YW +
Sbjct: 243 YMRELFFRGPFEVAFDVY-EDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIA 301
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGI 345
NSW +WG GY + R + +CGI
Sbjct: 302 NSWNTEWGMDGYFLIRRG----SSECGI 325
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 109/268 (40%), Gaps = 37/268 (13%)
Query: 110 KMERKKALRAGNGNAKSSDRYVYKHGDA---LPESVD----WRAKGAVGPVKDQGQCGSC 162
+ +R + N NA + + +A LP S D W + + DQ CGSC
Sbjct: 40 EAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSC 99
Query: 163 WAFSTVGAVEGINQIVTG-DLISLSEQELVDCDKQYNQGCNGGLMDYAFKFIIKNGGI-D 220
WA + A+ + G + +S +L+ C GCNGG D A+ + G + D
Sbjct: 100 WAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSD 159
Query: 221 TEEDYPY-------KATDGSCDPNRKNAHVVTIDGYEDVP---------------QNDEK 258
+ YP+ K+ +G ++ N + D P Q ++
Sbjct: 160 YCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDD 219
Query: 259 SLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELD-HGVIAVGYGTDGHLDYWIVR 317
+++ P VA + F Y SGV+ + G L H V VG+GT + YW +
Sbjct: 220 YMRELFFRGPFEVAFDVY-EDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIA 278
Query: 318 NSWGPDWGESGYIRMERNVNTKTGKCGI 345
NSW +WG GY + R + +CGI
Sbjct: 279 NSWNTEWGMDGYFLIRRG----SSECGI 302
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 107/242 (44%), Gaps = 41/242 (16%)
Query: 138 LPESVDWRAKGAV---GPVKDQ---GQCGSCWAFSTVGAV-EGINQIVTGDLIS--LSEQ 188
LP+S DWR V ++Q CGSCWA ++ A+ + IN G S LS Q
Sbjct: 36 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 95
Query: 189 ELVDCDKQYNQG-CNGG----LMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNR----- 238
++DC N G C GG + DYA + GI E Y+A D CD
Sbjct: 96 NVIDCG---NAGSCEGGNDLSVWDYAHQH-----GIPDETCNNYQAKDQECDKFNQCGTC 147
Query: 239 ---------KNAHVVTIDGYEDVPQNDEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFT 289
+N + + Y + EK + + A+ P+S I A Y G++
Sbjct: 148 NEFKECHAIRNYTLWRVGDYGSL-SGREKMMAEIYANGPISCGIMAT-ERLANYTGGIYA 205
Query: 290 GICGTE-LDHGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNV--NTKTGKCGIA 346
T ++H V G+G +YWIVRNSWG WGE G++R+ + + K + +A
Sbjct: 206 EYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLA 265
Query: 347 IE 348
IE
Sbjct: 266 IE 267
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 107/242 (44%), Gaps = 41/242 (16%)
Query: 138 LPESVDWRAKGAV---GPVKDQ---GQCGSCWAFSTVGAV-EGINQIVTGDLIS--LSEQ 188
LP+S DWR V ++Q CGSCWA ++ A+ + IN G S LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 189 ELVDCDKQYNQG-CNGG----LMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNR----- 238
++DC N G C GG + DYA + GI E Y+A D CD
Sbjct: 61 NVIDCG---NAGSCEGGNDLSVWDYAHQH-----GIPDETCNNYQAKDQECDKFNQCGTC 112
Query: 239 ---------KNAHVVTIDGYEDVPQNDEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFT 289
+N + + Y + EK + + A+ P+S I A Y G++
Sbjct: 113 NEFKECHAIRNYTLWRVGDYGSL-SGREKMMAEIYANGPISCGIMAT-ERLANYTGGIYA 170
Query: 290 GICGTE-LDHGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNV--NTKTGKCGIA 346
T ++H V G+G +YWIVRNSWG WGE G++R+ + + K + +A
Sbjct: 171 EYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLA 230
Query: 347 IE 348
IE
Sbjct: 231 IE 232
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 138 LPESVDWR---AKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLIS--LSEQELVD 192
LP S DWR V PV++Q CGSC++F+++G +E +I+T + + LS QE+V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 193 CDKQYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSC 234
C QY QGC GG ++ G+ E +PY TD C
Sbjct: 61 CS-QYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPC 101
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 65.9 bits (159), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 39 ESHMRMMYEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNEHNAVARTYKVGLNKFADLT 98
E+H + + + + K+Y E++RR+ IFK+NL +++ HN +Y + +N F DL+
Sbjct: 18 EAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLS 77
Query: 99 NDEFRNMYLGAKMER 113
DEFR YLG K R
Sbjct: 78 RDEFRRKYLGFKKSR 92
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 104/251 (41%), Gaps = 46/251 (18%)
Query: 138 LPESVDWRAKGAVGP----VKDQGQCGSCWAFSTVGAVEGINQIVTGDLISL---SEQEL 190
LPES D R + P ++DQG CGSCWAF V A+ I + +++ +E L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 191 VDCDKQYNQGCNGGLMDYAFKFIIKNGGIDT----------------------------- 221
C + GCNGG A+ F K G +
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 222 -EEDYP--YKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVASQPVSVAIEAGGM 278
E D P K + P+ K Y V N+++ + + + PV A
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSY-SVANNEKEIMAEIYKNGPVEGAFSVYS- 178
Query: 279 AFQLYKSGVFTGICGTELD-HGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVN 337
F LYKSGV+ + G + H + +G+G + YW+V NSW DWG++G+ ++ R +
Sbjct: 179 DFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQD 238
Query: 338 TKTGKCGIAIE 348
CGI E
Sbjct: 239 ----HCGIESE 245
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 104/251 (41%), Gaps = 46/251 (18%)
Query: 138 LPESVDWRAKGAVGP----VKDQGQCGSCWAFSTVGAVEGINQIVTGDLISL---SEQEL 190
LPES D R + P ++DQG CGSCWAF V A+ I + +++ +E L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 191 VDCDKQYNQGCNGGLMDYAFKFIIKNGGIDT----------------------------- 221
C + GCNGG A+ F K G +
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 222 -EEDYP--YKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVASQPVSVAIEAGGM 278
E D P K + P+ K Y V N+++ + + + PV A
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSY-SVANNEKEIMAEIYKNGPVEGAFSVYS- 178
Query: 279 AFQLYKSGVFTGICGTELD-HGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVN 337
F LYKSGV+ + G + H + +G+G + YW+V NSW DWG++G+ ++ R +
Sbjct: 179 DFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQD 238
Query: 338 TKTGKCGIAIE 348
CGI E
Sbjct: 239 ----HCGIESE 245
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 35/216 (16%)
Query: 153 VKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDK-QYNQGCNGGLMDYAFK 211
V+DQG C + W F++ +E I + + +S + +C K ++ C+ G F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 212 FIIKN-GGIDTEEDYPY-----------------------KATDGSCDPNRKNAHVVTID 247
II++ G + E +YPY K +PN + T
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 143
Query: 248 GYEDVPQNDE---KSLQKAVASQPVSVA-IEAGGMAFQLYKSGVFTGICGTEL-DHGVIA 302
E N + K ++ V ++ +A I+A + + +CG + DH V
Sbjct: 144 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADHAVNI 203
Query: 303 VGYG----TDGHL-DYWIVRNSWGPDWGESGYIRME 333
VGYG ++G YWIVRNSWGP WG+ GY +++
Sbjct: 204 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 239
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 35/216 (16%)
Query: 153 VKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDK-QYNQGCNGGLMDYAFK 211
V+DQG C + W F++ +E I + + +S + +C K ++ C+ G F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 212 FIIKN-GGIDTEEDYPY-----------------------KATDGSCDPNRKNAHVVTID 247
II++ G + E +YPY K +PN + T
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 144
Query: 248 GYEDVPQNDE---KSLQKAVASQPVSVA-IEAGGMAFQLYKSGVFTGICGTEL-DHGVIA 302
E N + K ++ V ++ +A I+A + + +CG + DH V
Sbjct: 145 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNI 204
Query: 303 VGYG----TDGHL-DYWIVRNSWGPDWGESGYIRME 333
VGYG ++G YWIVRNSWGP WG+ GY +++
Sbjct: 205 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 240
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 34/51 (66%), Gaps = 6/51 (11%)
Query: 297 DHGVIAVGYGTDGH--LDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGI 345
+H V+ VGYGTD +DYWIV+NSWG WGE+GY R+ R T +C I
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRG----TDECAI 56
>pdb|2JYV|A Chain A, Human Granulin F
Length = 72
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 381 DDYYTCPSGSTCCCMYEYGDFCFGWGCCPIESATCCEDHYSCCPHDFPICDLETGTC 437
D + CP STCC M + WGCCP+ A+CCED CCPH CDL C
Sbjct: 8 DSQFECPDFSTCCVMVDGS-----WGCCPMPQASCCEDRVHCCPHG-AFCDLVHTRC 58
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 251 DVPQNDEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELD-HGVIAVGYGTDG 309
V N+++ + + + PV A F LYKSGV+ + G + H + +G+G +
Sbjct: 104 SVANNEKEIMAEIYKNGPVEGAFSVYS-DFLLYKSGVYQHVSGEIMGGHAIRILGWGVEN 162
Query: 310 HLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIE 348
YW+V NSW DWG++G+ ++ R + CGI E
Sbjct: 163 GTPYWLVGNSWNTDWGDNGFFKILRGQD----HCGIESE 197
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 280 FQLYKSGVFTGICGTELD-HGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVNT 338
F LYKSGV+ + G + H + +G+G + YW+V NSW DWG++G+ ++ R +
Sbjct: 131 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQD- 189
Query: 339 KTGKCGIAIE 348
CGI E
Sbjct: 190 ---HCGIESE 196
>pdb|2JYE|A Chain A, Human Granulin A
Length = 72
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 380 CDDYYTCPSGSTCCCMYEYGDFCFGWGCCPIESATCCEDHYSCCPHDFPICDLETGTCQM 439
CD +CP G TCC + G WGCCP A CCEDH CCP F CD + GTC+
Sbjct: 6 CDMEVSCPDGYTCC-RLQSG----AWGCCPFTQAVCCEDHIHCCPAGF-TCDTQKGTCEQ 59
Query: 440 SANNPL 445
L
Sbjct: 60 KLAAAL 65
>pdb|2JYT|A Chain A, Human Granulin C, Isomer 1
pdb|2JYU|A Chain A, Human Granulin C, Isomer 2
Length = 69
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 380 CDDYYTCPSGSTCCCMYEYGDFCFGWGCCPIESATCCEDHYSCCPHDF 427
CD+ +CPS TCC G+ WGCCPI A CC DH CCP +
Sbjct: 5 CDNVSSCPSSDTCC-QLTSGE----WGCCPIPEAVCCSDHQHCCPQGY 47
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 313 YWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352
YW+V+NSWG +WG GY++M ++ + CGIA SYP
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYP 40
>pdb|1FWO|A Chain A, The Solution Structure Of A 35-Residue Fragment From The
GranulinEPITHELIN-Like Subdomain Of Rice Oryzain Beta
(Rob 382-416 (C398s,C399s,C407s,C413s))
Length = 35
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 379 VCDDYYTCPSGSTCCCMYEYGDFCFGWGCCPIE 411
VCDD ++CP+GSTC + + + WGC P+E
Sbjct: 3 VCDDNFSCPAGSTCSSAFGFRNLSLVWGCSPVE 35
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 138 LPESVDWRAKGAVGP----VKDQGQCGSCWAFSTVGAVEGIN 175
LPES D R + P ++DQG CGSCWAF GAVE I+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAF---GAVEAIS 39
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 138 LPESVDWRAKGAVGP----VKDQGQCGSCWAFSTVGAVEGIN 175
LP S D R + P ++DQG CGSCWAF GAVE I+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAF---GAVEAIS 39
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 89/233 (38%), Gaps = 56/233 (24%)
Query: 137 ALPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAV--EGINQIVTGDLISLSEQELVDCD 194
ALP VD V DQG+ GSC A + A+ E I+ + + I + +
Sbjct: 56 ALPPKVDLTPPFQV---YDQGRIGSCTANALAAAIQFERIHDKQSPEFIP--SRLFI--- 107
Query: 195 KQYNQGCNGGLMDYAFKFIIKNG-------GIDTEEDYPY----------------KATD 231
YN+ G ++Y +I++G G+ E+++PY A+
Sbjct: 108 -YYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASK 166
Query: 232 GSCDPNRKNAHVVTIDGYEDVPQN-DEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTG 290
D K+A I Y V Q+ D AV S V F +Y S V
Sbjct: 167 KPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFV--------FGFSVYNSWVGNN 218
Query: 291 ICGTELD-----------HGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRM 332
+ H V+ VGY D + ++ +RNSWG + GE GY M
Sbjct: 219 SLPVRIPLPTKNDTLEGGHAVLCVGY--DDEIRHFRIRNSWGNNVGEDGYFWM 269
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 47 EHWL---VKHGKNYNALGEQERRFEIFKDNLKFVNEHNAVAR----TYKVGLNKFADLTN 99
E W+ K KNY A + RR I+ ++ + EHN T+K+G+N ADLT
Sbjct: 8 EEWVEYKSKFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTP 66
Query: 100 DEF 102
+EF
Sbjct: 67 EEF 69
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 308 DGHLDYWIVRNSWGPDWGESGYIRM 332
DG W V NSWG D G GY+ M
Sbjct: 385 DGAFTKWRVENSWGEDHGHKGYLCM 409
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 308 DGHLDYWIVRNSWGPDWGESGYIRM 332
DG W V NSWG D G GY+ M
Sbjct: 385 DGAFTKWRVENSWGEDHGHKGYLCM 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,382,562
Number of Sequences: 62578
Number of extensions: 619694
Number of successful extensions: 1698
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1227
Number of HSP's gapped (non-prelim): 159
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)