Query 012022
Match_columns 472
No_of_seqs 392 out of 2129
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 2.6E-79 5.6E-84 593.8 25.4 298 40-353 65-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 9.9E-76 2.1E-80 594.2 35.2 298 39-351 31-337 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 4.7E-74 1E-78 598.2 31.6 316 32-354 156-488 (489)
4 PTZ00200 cysteine proteinase; 100.0 6.8E-73 1.5E-77 587.8 33.9 310 37-355 117-446 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 1.8E-67 3.8E-72 530.2 29.4 286 50-353 30-323 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 8.9E-55 1.9E-59 423.7 22.4 208 138-352 1-240 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 4.4E-54 9.6E-59 417.7 23.2 210 138-353 1-237 (239)
8 cd02620 Peptidase_C1A_Cathepsi 100.0 1.4E-53 3E-58 413.5 22.0 205 139-350 1-234 (236)
9 cd02248 Peptidase_C1A Peptidas 100.0 2.4E-53 5.3E-58 403.8 23.0 207 139-352 1-210 (210)
10 PF00112 Peptidase_C1: Papain 100.0 3.4E-52 7.4E-57 397.0 19.4 213 138-353 1-219 (219)
11 PTZ00049 cathepsin C-like prot 100.0 6.9E-51 1.5E-55 432.9 22.7 214 135-355 378-677 (693)
12 PTZ00364 dipeptidyl-peptidase 100.0 1.2E-50 2.7E-55 427.1 24.0 208 135-351 202-456 (548)
13 smart00645 Pept_C1 Papain fami 100.0 1.7E-47 3.6E-52 354.1 18.1 166 138-348 1-169 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 5E-44 1.1E-48 341.3 20.6 193 141-336 1-213 (223)
15 PTZ00462 Serine-repeat antigen 100.0 4E-42 8.8E-47 375.1 22.6 202 150-356 544-783 (1004)
16 KOG1544 Predicted cysteine pro 100.0 1E-41 2.2E-46 326.8 7.3 263 75-350 151-456 (470)
17 KOG4296 Epithelin/granulin [Si 100.0 7.3E-29 1.6E-33 192.5 5.6 82 380-461 1-82 (90)
18 COG4870 Cysteine protease [Pos 99.9 1.2E-28 2.7E-33 242.9 6.8 195 136-336 97-314 (372)
19 cd00585 Peptidase_C1B Peptidas 99.9 2.6E-21 5.6E-26 200.7 14.1 179 151-335 55-399 (437)
20 smart00277 GRAN Granulin. 99.9 3.3E-22 7.1E-27 143.6 3.8 51 381-437 1-51 (51)
21 PF00396 Granulin: Granulin; 99.7 2.8E-18 6E-23 119.8 2.5 43 391-439 1-43 (43)
22 PF08246 Inhibitor_I29: Cathep 99.6 7.6E-16 1.7E-20 116.4 7.3 57 46-102 1-58 (58)
23 PF03051 Peptidase_C1_2: Pepti 99.5 1.1E-13 2.3E-18 144.2 15.5 182 151-335 56-400 (438)
24 smart00848 Inhibitor_I29 Cathe 99.4 1.1E-13 2.3E-18 104.0 5.0 56 46-101 1-57 (57)
25 COG3579 PepC Aminopeptidase C 98.3 7.3E-06 1.6E-10 81.0 11.6 76 257-334 297-401 (444)
26 PF13529 Peptidase_C39_2: Pept 97.0 0.0098 2.1E-07 51.7 11.1 125 152-320 4-144 (144)
27 KOG4128 Bleomycin hydrolases a 96.1 0.0067 1.5E-07 60.3 4.7 76 256-333 305-412 (457)
28 PF08127 Propeptide_C1: Peptid 95.8 0.0059 1.3E-07 42.5 2.0 34 75-110 4-37 (41)
29 PF05543 Peptidase_C47: Stapho 94.9 0.43 9.4E-06 43.8 11.6 119 154-321 17-145 (175)
30 PF14399 Transpep_BrtH: NlpC/p 84.2 2 4.2E-05 43.2 5.8 53 257-316 78-131 (317)
31 COG4990 Uncharacterized protei 79.6 4 8.7E-05 37.7 5.3 51 251-321 117-168 (195)
32 cd02549 Peptidase_C39A A sub-f 64.9 17 0.00037 31.3 5.9 44 260-320 70-114 (141)
33 PF09778 Guanylate_cyc_2: Guan 59.3 32 0.00069 32.9 6.8 58 256-318 112-180 (212)
34 cd00044 CysPc Calpains, domain 58.6 35 0.00075 34.5 7.5 27 296-322 235-263 (315)
35 PF14625 Lustrin_cystein: Lust 46.0 16 0.00035 25.4 1.9 18 376-393 15-32 (45)
36 PF12385 Peptidase_C70: Papain 34.5 3.6E+02 0.0079 24.6 10.1 37 257-308 98-135 (166)
37 PF01640 Peptidase_C10: Peptid 30.9 2.3E+02 0.0049 26.4 7.7 49 258-331 141-192 (192)
38 PF13956 Ibs_toxin: Toxin Ibs, 30.7 24 0.00053 20.0 0.6 11 1-11 2-12 (19)
39 PF03032 Brevenin: Brevenin/es 26.3 44 0.00096 23.9 1.5 15 1-15 3-17 (46)
40 smart00289 WR1 Worm-specific r 25.8 54 0.0012 21.6 1.9 17 377-393 13-29 (38)
41 KOG4702 Uncharacterized conser 25.8 1.5E+02 0.0032 23.2 4.3 32 44-76 29-60 (77)
42 PF11777 DUF3316: Protein of u 25.7 52 0.0011 28.0 2.2 19 1-19 1-19 (114)
43 PF15240 Pro-rich: Proline-ric 25.0 56 0.0012 30.3 2.4 14 1-14 1-14 (179)
44 COG5294 Uncharacterized protei 24.2 56 0.0012 27.8 2.0 27 1-27 1-28 (113)
45 KOG1924 RhoA GTPase effector D 23.8 80 0.0017 35.8 3.6 14 340-353 522-535 (1102)
46 PF07829 Toxin_14: Alpha-A con 23.7 35 0.00075 20.7 0.5 10 406-415 1-11 (26)
47 PF01690 PLRV_ORF5: Potato lea 23.6 66 0.0014 34.2 2.9 8 359-366 6-13 (465)
48 PF11912 DUF3430: Protein of u 23.2 57 0.0012 30.5 2.2 7 1-7 1-7 (212)
49 COG5510 Predicted small secret 21.2 91 0.002 22.0 2.2 15 1-15 2-16 (44)
50 PF10731 Anophelin: Thrombin i 20.9 74 0.0016 24.0 1.9 8 23-30 30-37 (65)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-79 Score=593.85 Aligned_cols=298 Identities=45% Similarity=0.841 Sum_probs=260.0
Q ss_pred hHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcCCCC-cEEEecccCCCCCHHHHHHhHhcchhhhHHhhh
Q 012022 40 SHMRMMYEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNEHNAVAR-TYKVGLNKFADLTNDEFRNMYLGAKMERKKALR 118 (472)
Q Consensus 40 ~~~~~~F~~w~~~y~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~-s~~~g~N~FaDlt~eEf~~~~~~~~~~~~~~~~ 118 (472)
..+...|..|+.+|+|+|.+.+|.+.|+.+|++|+..++++++... |.++|+|+|+|||+|||++++++.+.. ..+.
T Consensus 65 l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~-~~~~- 142 (372)
T KOG1542|consen 65 LGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRR-GSKL- 142 (372)
T ss_pred cchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccc-cccC-
Confidence 3448899999999999999999999999999999999999988754 999999999999999999999876653 1111
Q ss_pred cCCCCCCCCCcccccCCCCCCCcccccCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhccCCC
Q 012022 119 AGNGNAKSSDRYVYKHGDALPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN 198 (472)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~alEs~~~i~~~~~~~LS~q~lvdC~~~~~ 198 (472)
..............||++||||++|.||||||||+||||||||+++++|++++|++|++++||||||+||+. .+
T Consensus 143 -----~~~~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~-~d 216 (372)
T KOG1542|consen 143 -----PGDAAEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS-CD 216 (372)
T ss_pred -----ccccccCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC-cC
Confidence 001111111234789999999999999999999999999999999999999999999999999999999997 49
Q ss_pred CCCCCCchHHHHHHHHHhCCccCCCCCcCCCCCC-CCCCCCCCCceEEeeeeEeCCCChHHHHHHHHH-cCCeEEEEEec
Q 012022 199 QGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDG-SCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVA-SQPVSVAIEAG 276 (472)
Q Consensus 199 ~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~-~C~~~~~~~~~~~i~~y~~i~~~~~~~lk~~l~-~gPV~v~i~~~ 276 (472)
.||+||.+.+||+|+++.+|+..|++|||++..+ .|...+ ...++.|.+|..++. ||++|.+.|. +|||+|+|++
T Consensus 217 ~gC~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~-~~~~v~I~~f~~l~~-nE~~ia~wLv~~GPi~vgiNa- 293 (372)
T KOG1542|consen 217 NGCNGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDK-SKIVVSIKDFSMLSN-NEDQIAAWLVTFGPLSVGINA- 293 (372)
T ss_pred CcCCCCChhHHHHHHHHhCCccccccCCccccCCCccccch-hhceEEEeccEecCC-CHHHHHHHHHhcCCeEEEEch-
Confidence 9999999999999998999999999999999888 898765 566788999999987 5667766655 5999999997
Q ss_pred ccccccccCceEeC---CCCCC-CCeeEEEEEeeccC-CeeEEEEEcCCCCCCCCCceEEEEecCCCCCCccccCCCCce
Q 012022 277 GMAFQLYKSGVFTG---ICGTE-LDHGVIAVGYGTDG-HLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSY 351 (472)
Q Consensus 277 ~~~f~~Y~sGIy~~---~~~~~-~~HaV~IVGyg~~~-g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~y 351 (472)
..+|.|++||+.+ .|... ++|||+|||||... .++|||||||||++|||+||+|+.||.| .|||+++++-
T Consensus 294 -~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N----~CGi~~mvss 368 (372)
T KOG1542|consen 294 -KPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSN----ACGIADMVSS 368 (372)
T ss_pred -HHHHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEecccc----ccccccchhh
Confidence 4799999999987 57765 89999999999987 8999999999999999999999999974 8999998875
Q ss_pred ee
Q 012022 352 PI 353 (472)
Q Consensus 352 p~ 353 (472)
++
T Consensus 369 ~~ 370 (372)
T KOG1542|consen 369 AA 370 (372)
T ss_pred hh
Confidence 44
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=9.9e-76 Score=594.18 Aligned_cols=298 Identities=39% Similarity=0.768 Sum_probs=248.1
Q ss_pred hhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCHHHHHHhHhcchhhhHHhhh
Q 012022 39 ESHMRMMYEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNEHNAVARTYKVGLNKFADLTNDEFRNMYLGAKMERKKALR 118 (472)
Q Consensus 39 ~~~~~~~F~~w~~~y~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~s~~~g~N~FaDlt~eEf~~~~~~~~~~~~~~~~ 118 (472)
..++..+|++|+++|+|+|.+.+|+.+|+.||++|+++|++||+++.+|++|+|+|+|||.|||++++++.........
T Consensus 31 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~- 109 (348)
T PTZ00203 31 GTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAK- 109 (348)
T ss_pred ccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccccccCCHHHHHHHhcCCCccccccc-
Confidence 4567778999999999999998889999999999999999999877899999999999999999988764221100000
Q ss_pred cCCCCCCCCCcccc--cCCCCCCCcccccCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhccC
Q 012022 119 AGNGNAKSSDRYVY--KHGDALPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQ 196 (472)
Q Consensus 119 ~~~~~~~~~~~~~~--~~~~~lP~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~alEs~~~i~~~~~~~LS~q~lvdC~~~ 196 (472)
......+.. ....+||++||||++|+|+||||||.||||||||++++||++++|++++.+.||+|+|+||+.
T Consensus 110 -----~~~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~- 183 (348)
T PTZ00203 110 -----QHAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDH- 183 (348)
T ss_pred -----ccccccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccC-
Confidence 000011111 112369999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCchHHHHHHHHHh--CCccCCCCCcCCCCCC---CCCCCCCCCceEEeeeeEeCCCChHHHHHHHHHc-CCeE
Q 012022 197 YNQGCNGGLMDYAFKFIIKN--GGIDTEEDYPYKATDG---SCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVAS-QPVS 270 (472)
Q Consensus 197 ~~~gC~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~i~~~~~~~lk~~l~~-gPV~ 270 (472)
.+.||+||++..||+|++++ +|+++|++|||.+.++ .|.........+.+.+|..++. +++.|+.+|.+ |||+
T Consensus 184 ~~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~ 262 (348)
T PTZ00203 184 VDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLAKNGPIS 262 (348)
T ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHHhCCCEE
Confidence 47899999999999999764 6799999999998766 5864322223457888988876 57788888875 9999
Q ss_pred EEEEecccccccccCceEeCCCC-CCCCeeEEEEEeeccCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCccccCCCC
Q 012022 271 VAIEAGGMAFQLYKSGVFTGICG-TELDHGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEP 349 (472)
Q Consensus 271 v~i~~~~~~f~~Y~sGIy~~~~~-~~~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~ 349 (472)
|+|++. +|++|++|||+. |. ..++|||+|||||+++|++|||||||||++|||+|||||+|+. |.|||++.+
T Consensus 263 v~i~a~--~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~----n~Cgi~~~~ 335 (348)
T PTZ00203 263 IAVDAS--SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGV----NACLLTGYP 335 (348)
T ss_pred EEEEhh--hhcCccCceeec-cCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCC----CcccccceE
Confidence 999983 899999999985 64 4579999999999998999999999999999999999999985 489998555
Q ss_pred ce
Q 012022 350 SY 351 (472)
Q Consensus 350 ~y 351 (472)
..
T Consensus 336 ~~ 337 (348)
T PTZ00203 336 VS 337 (348)
T ss_pred EE
Confidence 54
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=4.7e-74 Score=598.19 Aligned_cols=316 Identities=38% Similarity=0.682 Sum_probs=258.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcCC-CCcEEEecccCCCCCHHHHHHhHhcch
Q 012022 32 NGGGNMSESHMRMMYEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNEHNAV-ARTYKVGLNKFADLTNDEFRNMYLGAK 110 (472)
Q Consensus 32 ~~~~~~~~~~~~~~F~~w~~~y~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~-~~s~~~g~N~FaDlt~eEf~~~~~~~~ 110 (472)
.+.++. ..+....|++|+.+|+|+|.+.+|+.+|+.+|++|+++|++||++ +.+|++|+|+|+|||.|||++++++..
T Consensus 156 ~~~~~~-n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~ 234 (489)
T PTZ00021 156 SKFLMT-NLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLK 234 (489)
T ss_pred hhhhcc-ChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhcccc
Confidence 344443 345557899999999999999889999999999999999999975 579999999999999999999887643
Q ss_pred hhh-HHhhhcCC-CCCCC--CCcccccCCCCCCCcccccCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHcCCCcccC
Q 012022 111 MER-KKALRAGN-GNAKS--SDRYVYKHGDALPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLS 186 (472)
Q Consensus 111 ~~~-~~~~~~~~-~~~~~--~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~alEs~~~i~~~~~~~LS 186 (472)
... ........ ..... ...+.+.....+|++||||++|.|+||||||.||||||||++++||++++|+++..+.||
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LS 314 (489)
T PTZ00021 235 SFDFKSNGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLS 314 (489)
T ss_pred ccccccccccccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccC
Confidence 210 00000000 00000 001111111235999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCchHHHHHHHHHhCCccCCCCCcCCCC-CCCCCCCCCCCceEEeeeeEeCCCChHHHHHHHHH
Q 012022 187 EQELVDCDKQYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKAT-DGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVA 265 (472)
Q Consensus 187 ~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~-~~~C~~~~~~~~~~~i~~y~~i~~~~~~~lk~~l~ 265 (472)
+|+|+||+.. +.||+||++..||+|+++++||++|++|||.+. .+.|.... ....++|.+|..++ +++|+++|.
T Consensus 315 eQqLVDCs~~-n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~-~~~~~~i~~y~~i~---~~~lk~al~ 389 (489)
T PTZ00021 315 EQELVDCSFK-NNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDR-CKEKYKIKSYVSIP---EDKFKEAIR 389 (489)
T ss_pred HHHHhhhccC-CCCCCCcchHhhhhhhhhccccCcccccCccCCCCCcccccc-ccccceeeeEEEec---HHHHHHHHH
Confidence 9999999974 899999999999999988889999999999987 47896432 23457788998886 457888887
Q ss_pred c-CCeEEEEEecccccccccCceEeCCCCCCCCeeEEEEEeeccCC----------eeEEEEEcCCCCCCCCCceEEEEe
Q 012022 266 S-QPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGH----------LDYWIVRNSWGPDWGESGYIRMER 334 (472)
Q Consensus 266 ~-gPV~v~i~~~~~~f~~Y~sGIy~~~~~~~~~HaV~IVGyg~~~g----------~~yWivkNSWG~~WGe~GY~~i~r 334 (472)
. |||+|+|++. .+|++|++|||++.|+..++|||+|||||++++ .+|||||||||++|||+|||||+|
T Consensus 390 ~~GPVsv~i~a~-~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r 468 (489)
T PTZ00021 390 FLGPISVSIAVS-DDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIET 468 (489)
T ss_pred hcCCeEEEEEee-cccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEc
Confidence 5 9999999996 689999999999889888899999999997642 479999999999999999999999
Q ss_pred cCCCCCCccccCCCCceeee
Q 012022 335 NVNTKTGKCGIAIEPSYPIK 354 (472)
Q Consensus 335 ~~~~~~~~CgI~~~~~yp~~ 354 (472)
+.+...|+|||++.++||+.
T Consensus 469 ~~~g~~n~CGI~t~a~yP~~ 488 (489)
T PTZ00021 469 DENGLMKTCSLGTEAYVPLI 488 (489)
T ss_pred CCCCCCCCCCCcccceeEec
Confidence 87544579999999999985
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=6.8e-73 Score=587.76 Aligned_cols=310 Identities=38% Similarity=0.686 Sum_probs=256.4
Q ss_pred CChhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCHHHHHHhHhcchhhhHHh
Q 012022 37 MSESHMRMMYEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNEHNAVARTYKVGLNKFADLTNDEFRNMYLGAKMERKKA 116 (472)
Q Consensus 37 ~~~~~~~~~F~~w~~~y~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~s~~~g~N~FaDlt~eEf~~~~~~~~~~~~~~ 116 (472)
..+.++..+|++|+++|+|+|.+.+|+.+|+.+|++|+++|++||. +.+|++|+|+|+|||.|||.+++++...+....
T Consensus 117 ~~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~-~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~ 195 (448)
T PTZ00200 117 KLEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG-DEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSN 195 (448)
T ss_pred cchHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC-cCCeEEeccccccCCHHHHHHHhccCCCccccc
Confidence 4567788899999999999999988999999999999999999997 578999999999999999998876543221100
Q ss_pred h-hcCC--CCC-CCCCcccc-------------cCCCCCCCcccccCCCCCCccCCCC-CCccHHHHHHHHHHHHHHHHH
Q 012022 117 L-RAGN--GNA-KSSDRYVY-------------KHGDALPESVDWRAKGAVGPVKDQG-QCGSCWAFSTVGAVEGINQIV 178 (472)
Q Consensus 117 ~-~~~~--~~~-~~~~~~~~-------------~~~~~lP~s~DwR~~g~vtpVkdQg-~CGsCwAfA~~~alEs~~~i~ 178 (472)
. .... ... .....+.. .....+|++||||+.|.|+|||||| .||||||||++++||++++|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~ 275 (448)
T PTZ00200 196 STSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIY 275 (448)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHh
Confidence 0 0000 000 00000100 0012369999999999999999999 999999999999999999999
Q ss_pred cCCCcccCHHHHHhhccCCCCCCCCCchHHHHHHHHHhCCccCCCCCcCCCCCCCCCCCCCCCceEEeeeeEeCCCChHH
Q 012022 179 TGDLISLSEQELVDCDKQYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEK 258 (472)
Q Consensus 179 ~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~i~~~~~~ 258 (472)
++..+.||+|+|+||+. .+.||+||++..|++|+.++ ||++|++|||.+..+.|.... ...+.|.+|..++ ..+
T Consensus 276 ~~~~~~LSeQqLvDC~~-~~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~~--~~~~~i~~y~~~~--~~~ 349 (448)
T PTZ00200 276 RDKSVDLSEQELVNCDT-KSQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDGKCVVSS--TKKVYIDSYLVAK--GKD 349 (448)
T ss_pred cCCCeecCHHHHhhccC-ccCCCCCCcHHHHHHHHhhc-CccccccCCCCCCCCCCcCCC--CCeeEecceEecC--HHH
Confidence 99999999999999997 48899999999999999665 999999999999999997543 3345688887654 346
Q ss_pred HHHHHHHcCCeEEEEEecccccccccCceEeCCCCCCCCeeEEEEEeec--cCCeeEEEEEcCCCCCCCCCceEEEEecC
Q 012022 259 SLQKAVASQPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGT--DGHLDYWIVRNSWGPDWGESGYIRMERNV 336 (472)
Q Consensus 259 ~lk~~l~~gPV~v~i~~~~~~f~~Y~sGIy~~~~~~~~~HaV~IVGyg~--~~g~~yWivkNSWG~~WGe~GY~~i~r~~ 336 (472)
.|++++..|||+|+|.+. .+|+.|++|||++.|+..++|||+|||||. ++|.+|||||||||++|||+|||||+|+.
T Consensus 350 ~l~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~ 428 (448)
T PTZ00200 350 VLNKSLVISPTVVYIAVS-RELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTN 428 (448)
T ss_pred HHHHHHhcCCEEEEeecc-cccccCCCCccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCC
Confidence 788888889999999986 689999999999888877999999999985 46889999999999999999999999974
Q ss_pred CCCCCccccCCCCceeeec
Q 012022 337 NTKTGKCGIAIEPSYPIKK 355 (472)
Q Consensus 337 ~~~~~~CgI~~~~~yp~~~ 355 (472)
. +.|.|||++.+.||+..
T Consensus 429 ~-g~n~CGI~~~~~~P~~~ 446 (448)
T PTZ00200 429 E-GTDKCGILTVGLTPVFY 446 (448)
T ss_pred C-CCCcCCccccceeeEEe
Confidence 2 45799999999999874
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-67 Score=530.22 Aligned_cols=286 Identities=53% Similarity=0.935 Sum_probs=248.4
Q ss_pred HHHhCCccCChHHHHHHHHHHHHHHHHHHHhcCC-CCcEEEecccCCCCCHHHHHHhHhcchhhhHHhhhcCCCCCCCCC
Q 012022 50 LVKHGKNYNALGEQERRFEIFKDNLKFVNEHNAV-ARTYKVGLNKFADLTNDEFRNMYLGAKMERKKALRAGNGNAKSSD 128 (472)
Q Consensus 50 ~~~y~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~-~~s~~~g~N~FaDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (472)
+.+|.+.|.+..|+..|+.+|.+|+++|+.||.. ..+|++|+|+|+|++.+|++..+.+.+.+.... .
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~~-----------~ 98 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIKR-----------D 98 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCccccc-----------c
Confidence 6777788877788899999999999999999997 899999999999999999998877654432210 1
Q ss_pred ccc-ccCCCCCCCcccccCCC-CCCccCCCCCCccHHHHHHHHHHHHHHHHHcC-CCcccCHHHHHhhccCCCCCCCCCc
Q 012022 129 RYV-YKHGDALPESVDWRAKG-AVGPVKDQGQCGSCWAFSTVGAVEGINQIVTG-DLISLSEQELVDCDKQYNQGCNGGL 205 (472)
Q Consensus 129 ~~~-~~~~~~lP~s~DwR~~g-~vtpVkdQg~CGsCwAfA~~~alEs~~~i~~~-~~~~LS~q~lvdC~~~~~~gC~GG~ 205 (472)
.+. .....++|++||||++| .++||||||.||||||||++++||++++|+++ .++.||+|+|+||+...+.||+||+
T Consensus 99 ~~~~~~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~ 178 (325)
T KOG1543|consen 99 KFTEKLDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGE 178 (325)
T ss_pred ccccccchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCC
Confidence 111 12246899999999997 45559999999999999999999999999999 8999999999999986688999999
Q ss_pred hHHHHHHHHHhCCccCCCCCcCCCCCCCCCCCCCCCceEEeeeeEeCCCChHHHHHHHHHc-CCeEEEEEeccccccccc
Q 012022 206 MDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVAS-QPVSVAIEAGGMAFQLYK 284 (472)
Q Consensus 206 ~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~i~~~~~~~lk~~l~~-gPV~v~i~~~~~~f~~Y~ 284 (472)
+..|++|+.+++++..+++|||.+..+.|..... .....+.++..++.+ +++|+++|++ |||+|+|++.. +|++|+
T Consensus 179 ~~~A~~yi~~~G~~t~~~~Ypy~~~~~~C~~~~~-~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~-~F~~Y~ 255 (325)
T KOG1543|consen 179 PKNAFKYIKKNGGVTECENYPYIGKDGTCKSNKK-DKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYE-DFSLYK 255 (325)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCcCCCCCccCCCc-cceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehh-hhhhcc
Confidence 9999999999866555999999999999997765 556778888888887 8888888876 89999999985 999999
Q ss_pred CceEeCCCCC--CCCeeEEEEEeeccCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCccccCCCCce-ee
Q 012022 285 SGVFTGICGT--ELDHGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSY-PI 353 (472)
Q Consensus 285 sGIy~~~~~~--~~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~y-p~ 353 (472)
+|||.+++.+ .++|||+|||||+.++.+|||||||||+.|||+|||||.|+.+ .|+|++.++| |+
T Consensus 256 ~GVy~~~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~----~~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 256 GGVYAEEKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVN----KCGIASEASYGPI 323 (325)
T ss_pred CceEeCCCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCC----chhhhcccccCCC
Confidence 9999987655 5899999999999667899999999999999999999999975 7999999988 54
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=8.9e-55 Score=423.72 Aligned_cols=208 Identities=37% Similarity=0.727 Sum_probs=177.0
Q ss_pred CCCcccccCCC----CCCccCCCCCCccHHHHHHHHHHHHHHHHHcCC------CcccCHHHHHhhccCCCCCCCCCchH
Q 012022 138 LPESVDWRAKG----AVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGD------LISLSEQELVDCDKQYNQGCNGGLMD 207 (472)
Q Consensus 138 lP~s~DwR~~g----~vtpVkdQg~CGsCwAfA~~~alEs~~~i~~~~------~~~LS~q~lvdC~~~~~~gC~GG~~~ 207 (472)
||++||||+.+ +|+||||||.||||||||++++||++++|+++. .+.||+|+|+||+. .+.||+||++.
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~-~~~GC~GG~~~ 79 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ-YSQGCDGGFPF 79 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC-CCCCCCCCCHH
Confidence 79999999998 999999999999999999999999999998876 68899999999986 47899999999
Q ss_pred HHHHHHHHhCCccCCCCCcCCC-CCCCCCCCCCCCceEEeeeeEeCC----CChHHHHHHHHHc-CCeEEEEEecccccc
Q 012022 208 YAFKFIIKNGGIDTEEDYPYKA-TDGSCDPNRKNAHVVTIDGYEDVP----QNDEKSLQKAVAS-QPVSVAIEAGGMAFQ 281 (472)
Q Consensus 208 ~a~~~~~~~~Gi~~e~~yPY~~-~~~~C~~~~~~~~~~~i~~y~~i~----~~~~~~lk~~l~~-gPV~v~i~~~~~~f~ 281 (472)
.|++|+.+. |+++|++|||.. ..+.|.........+.+..|..+. .+++++|+++|.+ |||+++|.+. ++|+
T Consensus 80 ~a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F~ 157 (243)
T cd02621 80 LVGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDFD 157 (243)
T ss_pred HHHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-cccc
Confidence 999999765 999999999998 677897543122333444444332 3467888888864 9999999996 6899
Q ss_pred cccCceEeCC-----CCC---------CCCeeEEEEEeeccC--CeeEEEEEcCCCCCCCCCceEEEEecCCCCCCcccc
Q 012022 282 LYKSGVFTGI-----CGT---------ELDHGVIAVGYGTDG--HLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGI 345 (472)
Q Consensus 282 ~Y~sGIy~~~-----~~~---------~~~HaV~IVGyg~~~--g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI 345 (472)
+|++|||+.. |.. .++|||+|||||++. +.+|||||||||++|||+|||||+|+. +.|||
T Consensus 158 ~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~----~~cgi 233 (243)
T cd02621 158 FYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT----NECGI 233 (243)
T ss_pred ccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC----cccCc
Confidence 9999999874 432 468999999999986 899999999999999999999999985 48999
Q ss_pred CCCCcee
Q 012022 346 AIEPSYP 352 (472)
Q Consensus 346 ~~~~~yp 352 (472)
++++.+.
T Consensus 234 ~~~~~~~ 240 (243)
T cd02621 234 ESQAVFA 240 (243)
T ss_pred ccceEee
Confidence 9988654
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=4.4e-54 Score=417.66 Aligned_cols=210 Identities=32% Similarity=0.626 Sum_probs=178.7
Q ss_pred CCCcccccCCC---CCCccCCCC---CCccHHHHHHHHHHHHHHHHHcC---CCcccCHHHHHhhccCCCCCCCCCchHH
Q 012022 138 LPESVDWRAKG---AVGPVKDQG---QCGSCWAFSTVGAVEGINQIVTG---DLISLSEQELVDCDKQYNQGCNGGLMDY 208 (472)
Q Consensus 138 lP~s~DwR~~g---~vtpVkdQg---~CGsCwAfA~~~alEs~~~i~~~---~~~~LS~q~lvdC~~~~~~gC~GG~~~~ 208 (472)
||++||||+++ +|+|||||| .||||||||++++||+++.|+++ ..+.||+|+|+||+. +.||+||++..
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~--~~gC~GG~~~~ 78 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG--GGSCHGGDPGG 78 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC--CCCccCcCHHH
Confidence 79999999988 899999998 89999999999999999999875 357899999999986 78999999999
Q ss_pred HHHHHHHhCCccCCCCCcCCCCCCCCCCCC--------------CCCceEEeeeeEeCCCChHHHHHHHHH-cCCeEEEE
Q 012022 209 AFKFIIKNGGIDTEEDYPYKATDGSCDPNR--------------KNAHVVTIDGYEDVPQNDEKSLQKAVA-SQPVSVAI 273 (472)
Q Consensus 209 a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~--------------~~~~~~~i~~y~~i~~~~~~~lk~~l~-~gPV~v~i 273 (472)
|++|+.++ |+++|++|||...++.|.... .....+.+.+|..+. +++.|+++|. +|||+|+|
T Consensus 79 a~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~i 155 (239)
T cd02698 79 VYEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCGI 155 (239)
T ss_pred HHHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEEE
Confidence 99999775 999999999998776675311 112346677887774 3566777665 69999999
Q ss_pred EecccccccccCceEeCC-CCCCCCeeEEEEEeeccC-CeeEEEEEcCCCCCCCCCceEEEEecCC-CCCCccccCCCCc
Q 012022 274 EAGGMAFQLYKSGVFTGI-CGTELDHGVIAVGYGTDG-HLDYWIVRNSWGPDWGESGYIRMERNVN-TKTGKCGIAIEPS 350 (472)
Q Consensus 274 ~~~~~~f~~Y~sGIy~~~-~~~~~~HaV~IVGyg~~~-g~~yWivkNSWG~~WGe~GY~~i~r~~~-~~~~~CgI~~~~~ 350 (472)
.+. ++|+.|++|||+.. +...++|||+|||||+++ +++|||||||||++|||+|||||+|+.. ...++|||++++.
T Consensus 156 ~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~ 234 (239)
T cd02698 156 MAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCA 234 (239)
T ss_pred Eec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceE
Confidence 997 58999999999875 445679999999999876 9999999999999999999999999872 2335899999999
Q ss_pred eee
Q 012022 351 YPI 353 (472)
Q Consensus 351 yp~ 353 (472)
|+.
T Consensus 235 ~~~ 237 (239)
T cd02698 235 WAD 237 (239)
T ss_pred EEe
Confidence 875
No 8
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=1.4e-53 Score=413.49 Aligned_cols=205 Identities=37% Similarity=0.705 Sum_probs=171.7
Q ss_pred CCcccccCC--CC--CCccCCCCCCccHHHHHHHHHHHHHHHHHcC--CCcccCHHHHHhhccCCCCCCCCCchHHHHHH
Q 012022 139 PESVDWRAK--GA--VGPVKDQGQCGSCWAFSTVGAVEGINQIVTG--DLISLSEQELVDCDKQYNQGCNGGLMDYAFKF 212 (472)
Q Consensus 139 P~s~DwR~~--g~--vtpVkdQg~CGsCwAfA~~~alEs~~~i~~~--~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~ 212 (472)
|++||||++ ++ |+||+|||.||||||||++++||+++.|+++ +.+.||+|+|+||+...+.||+||++..|++|
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~ 80 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY 80 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 889999997 44 4599999999999999999999999999887 77899999999998744789999999999999
Q ss_pred HHHhCCccCCCCCcCCCCCCC------------------CCCCCC---CCceEEeeeeEeCCCChHHHHHHHHH-cCCeE
Q 012022 213 IIKNGGIDTEEDYPYKATDGS------------------CDPNRK---NAHVVTIDGYEDVPQNDEKSLQKAVA-SQPVS 270 (472)
Q Consensus 213 ~~~~~Gi~~e~~yPY~~~~~~------------------C~~~~~---~~~~~~i~~y~~i~~~~~~~lk~~l~-~gPV~ 270 (472)
+.++ |+++|++|||...+.. |..... ....+.+..+..+.. ++++||.+|. +|||+
T Consensus 81 i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~~~GPv~ 158 (236)
T cd02620 81 LTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPS-DETDIMKEIMTNGPVQ 158 (236)
T ss_pred HHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeCC-HHHHHHHHHHHCCCeE
Confidence 9766 9999999999876543 332211 112234555555553 5778888876 59999
Q ss_pred EEEEecccccccccCceEeCCCCC-CCCeeEEEEEeeccCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCccccCCCC
Q 012022 271 VAIEAGGMAFQLYKSGVFTGICGT-ELDHGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEP 349 (472)
Q Consensus 271 v~i~~~~~~f~~Y~sGIy~~~~~~-~~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~ 349 (472)
|+|.+. ++|+.|++|||+..+.. .++|||+|||||++++++|||||||||++|||+|||||+|+. +.|||++.+
T Consensus 159 v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~----~~cgi~~~~ 233 (236)
T cd02620 159 AAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGS----NECGIESEV 233 (236)
T ss_pred EEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccC----cccccccce
Confidence 999995 79999999999876554 468999999999999999999999999999999999999985 489999876
Q ss_pred c
Q 012022 350 S 350 (472)
Q Consensus 350 ~ 350 (472)
.
T Consensus 234 ~ 234 (236)
T cd02620 234 V 234 (236)
T ss_pred e
Confidence 4
No 9
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=2.4e-53 Score=403.80 Aligned_cols=207 Identities=58% Similarity=1.107 Sum_probs=185.8
Q ss_pred CCcccccCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhccCCCCCCCCCchHHHHHHHHHhCC
Q 012022 139 PESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYNQGCNGGLMDYAFKFIIKNGG 218 (472)
Q Consensus 139 P~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~alEs~~~i~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~~G 218 (472)
|++||||+.+.++||+|||.||+|||||++++||++++++++..++||+|+|++|....+.||.||+...|++++.+ .|
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~-~G 79 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKN-GG 79 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHH-CC
Confidence 78999999999999999999999999999999999999999988999999999998744789999999999998855 59
Q ss_pred ccCCCCCcCCCCCCCCCCCCCCCceEEeeeeEeCCCChHHHHHHHHHc-CCeEEEEEecccccccccCceEeCCCC--CC
Q 012022 219 IDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVAS-QPVSVAIEAGGMAFQLYKSGVFTGICG--TE 295 (472)
Q Consensus 219 i~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~i~~~~~~~lk~~l~~-gPV~v~i~~~~~~f~~Y~sGIy~~~~~--~~ 295 (472)
+++|++|||......|.... ....++|.+|..+...+++.||++|.+ |||++++.+. ++|+.|++|||+.++. ..
T Consensus 80 i~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~Giy~~~~~~~~~ 157 (210)
T cd02248 80 LASESDYPYTGKDGTCKYNS-SKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGGIYSGPCCSNTN 157 (210)
T ss_pred cCccccCCccCCCCCccCCC-CcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCCceeCCCCCCCc
Confidence 99999999999888897643 356688999999987778889999876 8999999986 6999999999987543 45
Q ss_pred CCeeEEEEEeeccCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCccccCCCCcee
Q 012022 296 LDHGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYP 352 (472)
Q Consensus 296 ~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~yp 352 (472)
++|||+|||||++.+.+|||||||||++||++|||||+|+. +.|||+..+.||
T Consensus 158 ~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~----~~cgi~~~~~~~ 210 (210)
T cd02248 158 LNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGS----NLCGIASYASYP 210 (210)
T ss_pred CCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCC----CccCceeeeecC
Confidence 69999999999998999999999999999999999999975 489999887775
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=3.4e-52 Score=396.95 Aligned_cols=213 Identities=46% Similarity=0.923 Sum_probs=183.3
Q ss_pred CCCcccccCC-CCCCccCCCCCCccHHHHHHHHHHHHHHHHHc-CCCcccCHHHHHhhccCCCCCCCCCchHHHHHHHHH
Q 012022 138 LPESVDWRAK-GAVGPVKDQGQCGSCWAFSTVGAVEGINQIVT-GDLISLSEQELVDCDKQYNQGCNGGLMDYAFKFIIK 215 (472)
Q Consensus 138 lP~s~DwR~~-g~vtpVkdQg~CGsCwAfA~~~alEs~~~i~~-~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~ 215 (472)
||++||||+. +.++||+|||.||+|||||+++++|++++++. ...++||+|+|++|....+.+|+||++..|++++++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~ 80 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN 80 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence 7999999998 48999999999999999999999999999998 688999999999999744789999999999999988
Q ss_pred hCCccCCCCCcCCCCC-CCCCCCCCCCceEEeeeeEeCCCChHHHHHHHHHc-CCeEEEEEecccccccccCceEeCC-C
Q 012022 216 NGGIDTEEDYPYKATD-GSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVAS-QPVSVAIEAGGMAFQLYKSGVFTGI-C 292 (472)
Q Consensus 216 ~~Gi~~e~~yPY~~~~-~~C~~~~~~~~~~~i~~y~~i~~~~~~~lk~~l~~-gPV~v~i~~~~~~f~~Y~sGIy~~~-~ 292 (472)
+.|+++|++|||.... ..|.........+++..|..+...+++.|+++|.+ |||++++.+...+|+.|++|||... +
T Consensus 81 ~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~ 160 (219)
T PF00112_consen 81 NNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDC 160 (219)
T ss_dssp HTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSS
T ss_pred cCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeecccc
Confidence 5699999999999877 67876533323467888988887778899999887 9999999998546999999999885 5
Q ss_pred C-CCCCeeEEEEEeeccCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCccccCCCCceee
Q 012022 293 G-TELDHGVIAVGYGTDGHLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPI 353 (472)
Q Consensus 293 ~-~~~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~yp~ 353 (472)
. ..++|||+|||||++.+++|||||||||++||++|||||+|+.+ ++|||+.+++||+
T Consensus 161 ~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~---~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 161 SNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYN---NECGIESQAVYPI 219 (219)
T ss_dssp SSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSS---SGGGTTSSEEEEE
T ss_pred ccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCC---CcCccCceeeecC
Confidence 4 46799999999999999999999999999999999999999875 4899999999996
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=6.9e-51 Score=432.90 Aligned_cols=214 Identities=29% Similarity=0.547 Sum_probs=175.8
Q ss_pred CCCCCCcccccCC----CCCCccCCCCCCccHHHHHHHHHHHHHHHHHcCC-----C-----cccCHHHHHhhccCCCCC
Q 012022 135 GDALPESVDWRAK----GAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGD-----L-----ISLSEQELVDCDKQYNQG 200 (472)
Q Consensus 135 ~~~lP~s~DwR~~----g~vtpVkdQg~CGsCwAfA~~~alEs~~~i~~~~-----~-----~~LS~q~lvdC~~~~~~g 200 (472)
..+||++||||+. +.++||+|||.||||||||++++||++++|++++ . ..||+|+|+||+. +++|
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~-~nqG 456 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF-YDQG 456 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC-CCCC
Confidence 4689999999985 6799999999999999999999999999998643 1 2799999999987 5899
Q ss_pred CCCCchHHHHHHHHHhCCccCCCCCcCCCCCCCCCCCCCC--------------------------------------Cc
Q 012022 201 CNGGLMDYAFKFIIKNGGIDTEEDYPYKATDGSCDPNRKN--------------------------------------AH 242 (472)
Q Consensus 201 C~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~--------------------------------------~~ 242 (472)
|+||++..|++|+.+. ||++|++|||++..+.|...... ..
T Consensus 457 C~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (693)
T PTZ00049 457 CNGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPA 535 (693)
T ss_pred cCCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999765 99999999999888888532110 11
Q ss_pred eEEeeeeEeCC-------CChHHHHHHHHH-cCCeEEEEEecccccccccCceEeCC-------CCC-------------
Q 012022 243 VVTIDGYEDVP-------QNDEKSLQKAVA-SQPVSVAIEAGGMAFQLYKSGVFTGI-------CGT------------- 294 (472)
Q Consensus 243 ~~~i~~y~~i~-------~~~~~~lk~~l~-~gPV~v~i~~~~~~f~~Y~sGIy~~~-------~~~------------- 294 (472)
++.+.+|..+. .++++.|+.+|. +|||+|+|++. ++|++|++|||+.. |..
T Consensus 536 r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G 614 (693)
T PTZ00049 536 RWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITG 614 (693)
T ss_pred ceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCccccccccccccc
Confidence 23345555553 235677777665 59999999996 68999999999852 531
Q ss_pred --CCCeeEEEEEeecc--CCe--eEEEEEcCCCCCCCCCceEEEEecCCCCCCccccCCCCceeeec
Q 012022 295 --ELDHGVIAVGYGTD--GHL--DYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSYPIKK 355 (472)
Q Consensus 295 --~~~HaV~IVGyg~~--~g~--~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~yp~~~ 355 (472)
.++|||+|||||.+ +|. +|||||||||++|||+|||||+|+. |.|||++++.|+..+
T Consensus 615 ~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~----N~CGIEs~a~~~~pd 677 (693)
T PTZ00049 615 WEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGK----NFSGIESQSLFIEPD 677 (693)
T ss_pred cccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCC----CccCCccceeEEeee
Confidence 36999999999975 464 7999999999999999999999986 489999999997743
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=1.2e-50 Score=427.06 Aligned_cols=208 Identities=25% Similarity=0.537 Sum_probs=172.7
Q ss_pred CCCCCCcccccCCC---CCCccCCCCC---CccHHHHHHHHHHHHHHHHHcC------CCcccCHHHHHhhccCCCCCCC
Q 012022 135 GDALPESVDWRAKG---AVGPVKDQGQ---CGSCWAFSTVGAVEGINQIVTG------DLISLSEQELVDCDKQYNQGCN 202 (472)
Q Consensus 135 ~~~lP~s~DwR~~g---~vtpVkdQg~---CGsCwAfA~~~alEs~~~i~~~------~~~~LS~q~lvdC~~~~~~gC~ 202 (472)
..+||++||||++| +|+||||||. ||||||||++++||++++|+++ ..+.||+|+|+||+. +++||+
T Consensus 202 ~~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~-~n~GCd 280 (548)
T PTZ00364 202 GDPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ-YGQGCA 280 (548)
T ss_pred ccCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC-CCCCCC
Confidence 46799999999987 7999999999 9999999999999999999884 467899999999986 589999
Q ss_pred CCchHHHHHHHHHhCCccCCCCC--cCCCCCC---CCCCCCCCCceE------EeeeeEeCCCChHHHHHHHHH-cCCeE
Q 012022 203 GGLMDYAFKFIIKNGGIDTEEDY--PYKATDG---SCDPNRKNAHVV------TIDGYEDVPQNDEKSLQKAVA-SQPVS 270 (472)
Q Consensus 203 GG~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~---~C~~~~~~~~~~------~i~~y~~i~~~~~~~lk~~l~-~gPV~ 270 (472)
||++..|++|+.++ ||++|++| ||.+.++ .|..... ...+ .+.+|..+. +++++|+.+|. +|||+
T Consensus 281 GG~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~~-~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPVs 357 (548)
T PTZ00364 281 GGFPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRRP-SRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPVP 357 (548)
T ss_pred CCcHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCcc-cceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCeE
Confidence 99999999999765 99999999 9987665 4865332 2223 344454444 35666777665 59999
Q ss_pred EEEEecccccccccCceEeCC---------C-----------CCCCCeeEEEEEeec-cCCeeEEEEEcCCCC--CCCCC
Q 012022 271 VAIEAGGMAFQLYKSGVFTGI---------C-----------GTELDHGVIAVGYGT-DGHLDYWIVRNSWGP--DWGES 327 (472)
Q Consensus 271 v~i~~~~~~f~~Y~sGIy~~~---------~-----------~~~~~HaV~IVGyg~-~~g~~yWivkNSWG~--~WGe~ 327 (472)
|+|++. .+|+.|++|||.+. | ...++|||+|||||+ ++|.+|||||||||+ +|||+
T Consensus 358 VaIda~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~ 436 (548)
T PTZ00364 358 ASVYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDG 436 (548)
T ss_pred EEEEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccC
Confidence 999997 68999999998621 1 134699999999997 478899999999999 99999
Q ss_pred ceEEEEecCCCCCCccccCCCCce
Q 012022 328 GYIRMERNVNTKTGKCGIAIEPSY 351 (472)
Q Consensus 328 GY~~i~r~~~~~~~~CgI~~~~~y 351 (472)
|||||+||. |.|||++.+..
T Consensus 437 GYfRI~RG~----N~CGIes~~v~ 456 (548)
T PTZ00364 437 GTRKIARGV----NAYNIESEVVV 456 (548)
T ss_pred CeEEEEcCC----Ccccccceeee
Confidence 999999986 48999998873
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=1.7e-47 Score=354.11 Aligned_cols=166 Identities=64% Similarity=1.183 Sum_probs=148.0
Q ss_pred CCCcccccCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhccCCCCCCCCCchHHHHHHHHHhC
Q 012022 138 LPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYNQGCNGGLMDYAFKFIIKNG 217 (472)
Q Consensus 138 lP~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~alEs~~~i~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~~ 217 (472)
||++||||+.++++||+|||.||+|||||++++||++++++++..++||+|+|++|....+.||+||++..|++|+.+++
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~ 80 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG 80 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999998899999999999874356999999999999998766
Q ss_pred CccCCCCCcCCCCCCCCCCCCCCCceEEeeeeEeCCCChHHHHHHHHHcCCeEEEEEecccccccccCceEeC-CCCCC-
Q 012022 218 GIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVASQPVSVAIEAGGMAFQLYKSGVFTG-ICGTE- 295 (472)
Q Consensus 218 Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~i~~~~~~~lk~~l~~gPV~v~i~~~~~~f~~Y~sGIy~~-~~~~~- 295 (472)
|+++|++|||.. ++.+.+ .+|+.|++|||+. .|...
T Consensus 81 Gi~~e~~~PY~~----------------------------------------~~~~~~--~~f~~Y~~Gi~~~~~~~~~~ 118 (174)
T smart00645 81 GLETESCYPYTG----------------------------------------SVAIDA--SDFQFYKSGIYDHPGCGSGT 118 (174)
T ss_pred CcccccccCccc----------------------------------------EEEEEc--ccccCCcCeEECCCCCCCCc
Confidence 899999999975 455554 3699999999987 46544
Q ss_pred CCeeEEEEEeecc-CCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCccccCCC
Q 012022 296 LDHGVIAVGYGTD-GHLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIE 348 (472)
Q Consensus 296 ~~HaV~IVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~ 348 (472)
.+|+|+|||||.+ +|++|||||||||+.|||+|||||.|+.. +.|||+..
T Consensus 119 ~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~---~~c~i~~~ 169 (174)
T smart00645 119 LDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKN---NECGIEAS 169 (174)
T ss_pred ccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCC---CccCceee
Confidence 6999999999987 89999999999999999999999999852 48999543
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=5e-44 Score=341.33 Aligned_cols=193 Identities=36% Similarity=0.605 Sum_probs=166.6
Q ss_pred cccccCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHcC--CCcccCHHHHHhhccCC----CCCCCCCchHHHHH-HH
Q 012022 141 SVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTG--DLISLSEQELVDCDKQY----NQGCNGGLMDYAFK-FI 213 (472)
Q Consensus 141 s~DwR~~g~vtpVkdQg~CGsCwAfA~~~alEs~~~i~~~--~~~~LS~q~lvdC~~~~----~~gC~GG~~~~a~~-~~ 213 (472)
.||||+.+ ++||+|||.||+|||||+++++|+++.++.+ ..++||+|+|++|.... ..||.||.+..++. ++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999998 9999999999999999999999999999887 78899999999998753 36999999999998 55
Q ss_pred HHhCCccCCCCCcCCCCCCCCCCC---CCCCceEEeeeeEeCCCChHHHHHHHHHc-CCeEEEEEecccccccccCceEe
Q 012022 214 IKNGGIDTEEDYPYKATDGSCDPN---RKNAHVVTIDGYEDVPQNDEKSLQKAVAS-QPVSVAIEAGGMAFQLYKSGVFT 289 (472)
Q Consensus 214 ~~~~Gi~~e~~yPY~~~~~~C~~~---~~~~~~~~i~~y~~i~~~~~~~lk~~l~~-gPV~v~i~~~~~~f~~Y~sGIy~ 289 (472)
++.|+++|++|||......|... ......+++..|..+..++++.||++|.+ |||++++.+. ..|..|++|+|.
T Consensus 80 -~~~Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~~~~ 157 (223)
T cd02619 80 -ALKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEGIIY 157 (223)
T ss_pred -HHcCCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCcccc
Confidence 45599999999999987766532 23345577889988887778899999987 8999999986 789999999862
Q ss_pred ------CCC-CCCCCeeEEEEEeeccC--CeeEEEEEcCCCCCCCCCceEEEEecC
Q 012022 290 ------GIC-GTELDHGVIAVGYGTDG--HLDYWIVRNSWGPDWGESGYIRMERNV 336 (472)
Q Consensus 290 ------~~~-~~~~~HaV~IVGyg~~~--g~~yWivkNSWG~~WGe~GY~~i~r~~ 336 (472)
..+ ....+|||+|||||++. +++|||||||||+.||++||+||+++.
T Consensus 158 ~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 158 EEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred ccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 122 23569999999999986 899999999999999999999999975
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=4e-42 Score=375.14 Aligned_cols=202 Identities=25% Similarity=0.472 Sum_probs=160.7
Q ss_pred CCccCCCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhccC-CCCCCCCCchH-HHHHHHHHhCCccCCCCCcC
Q 012022 150 VGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQ-YNQGCNGGLMD-YAFKFIIKNGGIDTEEDYPY 227 (472)
Q Consensus 150 vtpVkdQg~CGsCwAfA~~~alEs~~~i~~~~~~~LS~q~lvdC~~~-~~~gC~GG~~~-~a~~~~~~~~Gi~~e~~yPY 227 (472)
..||||||.||+|||||++++||++++|+++..+.||+|+|+||+.. .+.||.||+.. .++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 57999999999999999999999999999999999999999999864 36899999755 45588877878999999999
Q ss_pred CC--CCCCCCCCCC-----------------CCceEEeeeeEeCCCC----h----HHHHHHHHHc-CCeEEEEEecccc
Q 012022 228 KA--TDGSCDPNRK-----------------NAHVVTIDGYEDVPQN----D----EKSLQKAVAS-QPVSVAIEAGGMA 279 (472)
Q Consensus 228 ~~--~~~~C~~~~~-----------------~~~~~~i~~y~~i~~~----~----~~~lk~~l~~-gPV~v~i~~~~~~ 279 (472)
.. ..+.|..... ....+.+.+|..+... + +++|+.+|++ |||+|+|++. +
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--d 701 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--N 701 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--h
Confidence 75 4567864321 0112334566655432 1 3577888876 9999999984 6
Q ss_pred ccccc-CceEeC-CCCC-CCCeeEEEEEeecc-----CCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCccccCCCCce
Q 012022 280 FQLYK-SGVFTG-ICGT-ELDHGVIAVGYGTD-----GHLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPSY 351 (472)
Q Consensus 280 f~~Y~-sGIy~~-~~~~-~~~HaV~IVGyg~~-----~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~y 351 (472)
|+.|. +|||.. .|+. .++|||+|||||.+ .+++|||||||||+.|||+|||||.|+. .+.|||+....+
T Consensus 702 f~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g---~n~CGin~i~t~ 778 (1004)
T PTZ00462 702 VLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYG---PSHCEDNFIHSV 778 (1004)
T ss_pred HHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCC---CCCCccchheee
Confidence 88885 898654 5774 57999999999974 2579999999999999999999999842 358999988888
Q ss_pred eeecC
Q 012022 352 PIKKG 356 (472)
Q Consensus 352 p~~~~ 356 (472)
++..-
T Consensus 779 ~~fn~ 783 (1004)
T PTZ00462 779 VIFNI 783 (1004)
T ss_pred eeEee
Confidence 88663
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=1e-41 Score=326.75 Aligned_cols=263 Identities=29% Similarity=0.542 Sum_probs=209.9
Q ss_pred HHHHHhcCCCCcEEEe-cccCCCCCHHHHHHhHhcchhhhHHhhhcCCCCCCCCCccc-ccCCCCCCCcccccCC--CCC
Q 012022 75 KFVNEHNAVARTYKVG-LNKFADLTNDEFRNMYLGAKMERKKALRAGNGNAKSSDRYV-YKHGDALPESVDWRAK--GAV 150 (472)
Q Consensus 75 ~~I~~~N~~~~s~~~g-~N~FaDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lP~s~DwR~~--g~v 150 (472)
.+|++.|..+.+|+++ ..+|..||.++-.+..||..+++.... .....+. .....+||+.||-|++ +.+
T Consensus 151 d~iE~in~G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~-------nMNEi~~~l~p~~~LPE~F~As~KWp~li 223 (470)
T KOG1544|consen 151 DMIEAINQGNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVM-------NMNEIYTVLNPGEVLPEAFEASEKWPNLI 223 (470)
T ss_pred HHHHHHhcCCccccccchhhhhcccccccceeeecccCchhhhh-------hHHhHhhccCcccccchhhhhhhcCCccc
Confidence 4789999988899986 448999999987777788766554321 0111111 1334789999999997 789
Q ss_pred CccCCCCCCccHHHHHHHHHHHHHHHHHcCC--CcccCHHHHHhhccCCCCCCCCCchHHHHHHHHHhCCccCCCCCcCC
Q 012022 151 GPVKDQGQCGSCWAFSTVGAVEGINQIVTGD--LISLSEQELVDCDKQYNQGCNGGLMDYAFKFIIKNGGIDTEEDYPYK 228 (472)
Q Consensus 151 tpVkdQg~CGsCwAfA~~~alEs~~~i~~~~--~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~ 228 (472)
.+|.|||+|++.|||+++++...+++|.... ...||+|+|++|.....+||+||+++.|+-|+.+. |++...+|||.
T Consensus 224 H~plDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~ 302 (470)
T KOG1544|consen 224 HEPLDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFS 302 (470)
T ss_pred cCccccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecc-ccccccccccc
Confidence 9999999999999999999999999887653 35799999999997668999999999999999655 99999999997
Q ss_pred CCC----CC------------------CCCCCCC-CceEEeeeeEeCCCChHHHHHHHHHcCCeEEEEEecccccccccC
Q 012022 229 ATD----GS------------------CDPNRKN-AHVVTIDGYEDVPQNDEKSLQKAVASQPVSVAIEAGGMAFQLYKS 285 (472)
Q Consensus 229 ~~~----~~------------------C~~~~~~-~~~~~i~~y~~i~~~~~~~lk~~l~~gPV~v~i~~~~~~f~~Y~s 285 (472)
..+ +. |+.+..+ ..++.+..-++|.++.+++|++++.+|||.+.|.+ +++|+.|++
T Consensus 303 ~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~V-HEDFF~Ykg 381 (470)
T KOG1544|consen 303 GDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEV-HEDFFLYKG 381 (470)
T ss_pred CCCCCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhh-hhhhhhhcc
Confidence 532 22 4333222 24566666667888888889999999999987776 699999999
Q ss_pred ceEeCCCC---------CCCCeeEEEEEeeccC-----CeeEEEEEcCCCCCCCCCceEEEEecCCCCCCccccCCCCc
Q 012022 286 GVFTGICG---------TELDHGVIAVGYGTDG-----HLDYWIVRNSWGPDWGESGYIRMERNVNTKTGKCGIAIEPS 350 (472)
Q Consensus 286 GIy~~~~~---------~~~~HaV~IVGyg~~~-----g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~ 350 (472)
|||.+... ....|+|.|.|||++. ..+|||..||||+.|||+|||||.||+| .|-|++...
T Consensus 382 GiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvN----ecdIEsfvI 456 (470)
T KOG1544|consen 382 GIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVN----ECDIESFVI 456 (470)
T ss_pred ceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEecccc----chhhhHhhh
Confidence 99987432 1357999999999873 2579999999999999999999999985 899987653
No 17
>KOG4296 consensus Epithelin/granulin [Signal transduction mechanisms]
Probab=99.95 E-value=7.3e-29 Score=192.45 Aligned_cols=82 Identities=55% Similarity=1.433 Sum_probs=78.7
Q ss_pred CCCCcccCCCCceeeccCCCCcccccccccCCCceecCCCccccCCCCCcccCCCCceeCCCCCccccccccccCccccc
Q 012022 380 CDDYYTCPSGSTCCCMYEYGDFCFGWGCCPIESATCCEDHYSCCPHDFPICDLETGTCQMSANNPLAVKSLKQIPAISVR 459 (472)
Q Consensus 380 c~~~~~c~~~~tcc~~~~~~~~c~~~~ccp~~~a~cc~d~~hccp~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~a~~~~ 459 (472)
||..++||+++||||+.+.+++|++|||||+++||||.|+.||||||||+||+..++|+.+.++++.++.|+|.||+..+
T Consensus 1 Cd~~~~Cp~~~TCCcl~e~~~~cfsWgCCp~e~A~CCdD~~hCCPh~ypVCD~~~~~Cl~k~ns~~sikal~kkpA~~~~ 80 (90)
T KOG4296|consen 1 CDSYTECPDSETCCCLYEYGGYCFSWGCCPMESAVCCDDRSHCCPHGYPVCDLQRSTCLMKKNSPTSIKALKKKPAIKTL 80 (90)
T ss_pred CCcceecCCCCceEEeeecCceeceeccccCCcceeecCCCccCCCCCcccccccceeeccCCCcccchhhccCCccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cc
Q 012022 460 AH 461 (472)
Q Consensus 460 ~~ 461 (472)
..
T Consensus 81 ~~ 82 (90)
T KOG4296|consen 81 ER 82 (90)
T ss_pred cc
Confidence 54
No 18
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-28 Score=242.88 Aligned_cols=195 Identities=28% Similarity=0.446 Sum_probs=132.7
Q ss_pred CCCCCcccccCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhccC-CCCCC-----CCCchHHH
Q 012022 136 DALPESVDWRAKGAVGPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQ-YNQGC-----NGGLMDYA 209 (472)
Q Consensus 136 ~~lP~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~alEs~~~i~~~~~~~LS~q~lvdC~~~-~~~gC-----~GG~~~~a 209 (472)
..+|..||||+.|.|+||||||.||+||||++++++|+.+.-.. ..++|+..+..-... +..+| +||....+
T Consensus 97 ~s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~ 174 (372)
T COG4870 97 ASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMS 174 (372)
T ss_pred ccchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCccccc
Confidence 45899999999999999999999999999999999999764432 455666655432211 22333 37777777
Q ss_pred HHHHHHhCCccCCCCCcCCCCCCCCCCCCCCCceEEeeeeEeCCCC----hHHHHHHHHHc-CCeE--EEEEeccccccc
Q 012022 210 FKFIIKNGGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQN----DEKSLQKAVAS-QPVS--VAIEAGGMAFQL 282 (472)
Q Consensus 210 ~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~i~~~----~~~~lk~~l~~-gPV~--v~i~~~~~~f~~ 282 (472)
..|+.++.|-+.|.+-||......|.......+. +..-..++.. +.-.+++++.. |-+. +.|++. .+..
T Consensus 175 ~a~l~e~sgpv~et~d~y~~~s~~~~~~~p~~k~--~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~--~~~~ 250 (372)
T COG4870 175 AAYLTEWSGPVYETDDPYSENSYFSPTNLPVTKH--VQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDAT--NSLG 250 (372)
T ss_pred cccccccCCcchhhcCccccccccCCcCCchhhc--cccceecccchhhhcccchHHHHhhhccccceeEEecc--cccc
Confidence 7888899999999999998876666543322111 1111112211 12235555543 5443 235543 2322
Q ss_pred ccCceEeCCCCCCCCeeEEEEEeecc----------CCeeEEEEEcCCCCCCCCCceEEEEecC
Q 012022 283 YKSGVFTGICGTELDHGVIAVGYGTD----------GHLDYWIVRNSWGPDWGESGYIRMERNV 336 (472)
Q Consensus 283 Y~sGIy~~~~~~~~~HaV~IVGyg~~----------~g~~yWivkNSWG~~WGe~GY~~i~r~~ 336 (472)
..-+.|........+|||+||||+|. .|.++||||||||++||++|||||++..
T Consensus 251 ~~~~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~y 314 (372)
T COG4870 251 ICIPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYY 314 (372)
T ss_pred cccCCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeee
Confidence 23344443333677999999999985 3567999999999999999999999874
No 19
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.86 E-value=2.6e-21 Score=200.70 Aligned_cols=179 Identities=23% Similarity=0.384 Sum_probs=125.4
Q ss_pred CccCCCCCCccHHHHHHHHHHHHHHHHH-cCCCcccCHHHHHh----------------hccC-----------CCCCCC
Q 012022 151 GPVKDQGQCGSCWAFSTVGAVEGINQIV-TGDLISLSEQELVD----------------CDKQ-----------YNQGCN 202 (472)
Q Consensus 151 tpVkdQg~CGsCwAfA~~~alEs~~~i~-~~~~~~LS~q~lvd----------------C~~~-----------~~~gC~ 202 (472)
.||+||+.-|.||.||+...||..+..+ +.+.++||+.+++. .... .....+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 4899999999999999999999977664 45678999988754 2110 134568
Q ss_pred CCchHHHHHHHHHhCCccCCCCCcCCCCC---------------------------C-----------------------
Q 012022 203 GGLMDYAFKFIIKNGGIDTEEDYPYKATD---------------------------G----------------------- 232 (472)
Q Consensus 203 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~---------------------------~----------------------- 232 (472)
||....+...+ +++|+++++.||-+... +
T Consensus 135 GGqw~m~~~li-~KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 135 GGQWDMLVNLI-EKYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCchHHHHHHH-HHcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877 56699999999853110 0
Q ss_pred ---CCCCC--------C--------------------------------C-----CCceEEe-----------eeeEeCC
Q 012022 233 ---SCDPN--------R--------------------------------K-----NAHVVTI-----------DGYEDVP 253 (472)
Q Consensus 233 ---~C~~~--------~--------------------------------~-----~~~~~~i-----------~~y~~i~ 253 (472)
..+.. . . -.+.+.+ ..|.+++
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nvp 293 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNVP 293 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEecC
Confidence 00000 0 0 0001111 1223333
Q ss_pred CChHHHHH----HHHHc-CCeEEEEEecccccccccCceEeCC----------------------CCCCCCeeEEEEEee
Q 012022 254 QNDEKSLQ----KAVAS-QPVSVAIEAGGMAFQLYKSGVFTGI----------------------CGTELDHGVIAVGYG 306 (472)
Q Consensus 254 ~~~~~~lk----~~l~~-gPV~v~i~~~~~~f~~Y~sGIy~~~----------------------~~~~~~HaV~IVGyg 306 (472)
.+.|+ ++|.. +||.+++++. .|..|++||++.. +.+..+|||+|||||
T Consensus 294 ---~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~ 368 (437)
T cd00585 294 ---MDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVD 368 (437)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEE
Confidence 33444 45666 5999999995 5779999999653 123458999999999
Q ss_pred cc-CCe-eEEEEEcCCCCCCCCCceEEEEec
Q 012022 307 TD-GHL-DYWIVRNSWGPDWGESGYIRMERN 335 (472)
Q Consensus 307 ~~-~g~-~yWivkNSWG~~WGe~GY~~i~r~ 335 (472)
.+ +|+ .||+||||||+.||++||++|+++
T Consensus 369 ~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 369 LDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred ecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 75 475 699999999999999999999975
No 20
>smart00277 GRAN Granulin.
Probab=99.85 E-value=3.3e-22 Score=143.55 Aligned_cols=51 Identities=51% Similarity=1.402 Sum_probs=48.2
Q ss_pred CCCcccCCCCceeeccCCCCcccccccccCCCceecCCCccccCCCCCcccCCCCce
Q 012022 381 DDYYTCPSGSTCCCMYEYGDFCFGWGCCPIESATCCEDHYSCCPHDFPICDLETGTC 437 (472)
Q Consensus 381 ~~~~~c~~~~tcc~~~~~~~~c~~~~ccp~~~a~cc~d~~hccp~~~~~c~~~~~~c 437 (472)
|+.++||+++|||++.++. ||||||++||||+||+||||+|| +||++.++|
T Consensus 1 d~~~~Cp~~~TCC~~~~g~-----wgCCP~~~AvCC~D~~hCCP~gy-~Cd~~~~~C 51 (51)
T smart00277 1 DSATSCPDGTTCCLLPQGS-----WGCCPLPNAVCCEDGIHCCPHGY-HCDTDGGTC 51 (51)
T ss_pred CCcccCCCCCeEcCCCCCC-----EECCCCCCCCccCCCCccCCCCC-eeCCCCCcC
Confidence 5678999999999999986 99999999999999999999999 999999887
No 21
>PF00396 Granulin: Granulin; InterPro: IPR000118 Metazoan granulins [] are a family of cysteine-rich peptides of about 6 Kd which may have multiple biological activity. A precursor protein (known as acrogranin) potentially encodes seven different forms of granulin (grnA to grnG) which are probably released by post-translational proteolytic processing. Granulins are evolutionary related to a PMP-D1, a peptide extracted from the pars intercerebralis of migratory locusts []. A schematic representation of the structure of a granulin is shown below: xxxCxxxxxCxxxxxCCxxxxxxxxCCxxxxxxCCxxxxxCCxxxxxCxxxxxxCx 'C': conserved cysteine probably involved in a disulphide bond. In plants a granulin domain is often associated with the C terminus of cysteine proteases belong to the MEROPS peptidase family C1, subfamily C1A (papain).; PDB: 1I8Y_A 1QGM_A 1I8X_A 2JYT_A 2JYU_A 1FWO_A 2JYV_A 2JYE_A 1G26_A.
Probab=99.71 E-value=2.8e-18 Score=119.78 Aligned_cols=43 Identities=47% Similarity=1.257 Sum_probs=40.1
Q ss_pred ceeeccCCCCcccccccccCCCceecCCCccccCCCCCcccCCCCceeC
Q 012022 391 TCCCMYEYGDFCFGWGCCPIESATCCEDHYSCCPHDFPICDLETGTCQM 439 (472)
Q Consensus 391 tcc~~~~~~~~c~~~~ccp~~~a~cc~d~~hccp~~~~~c~~~~~~c~~ 439 (472)
|||.+.+++ ||||||++||||+|+.||||+|| +||++.++|+|
T Consensus 1 TCC~~~~g~-----~~CCP~~~avCC~D~~hCCP~G~-~C~~~~~~C~k 43 (43)
T PF00396_consen 1 TCCKTPSGG-----YGCCPYPNAVCCSDGKHCCPHGY-TCDPDGGSCIK 43 (43)
T ss_dssp EEEE-TTSS-----EEEEETSSSTTSSTTTTSSSTTS-EEECTTTEEES
T ss_pred CCcccCCCC-----ccccCCCCCCccCCCCccCCCcC-EECCCCCEEcC
Confidence 899999986 99999999999999999999999 99999999985
No 22
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.63 E-value=7.6e-16 Score=116.38 Aligned_cols=57 Identities=49% Similarity=0.880 Sum_probs=50.9
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhc-CCCCcEEEecccCCCCCHHHH
Q 012022 46 YEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNEHN-AVARTYKVGLNKFADLTNDEF 102 (472)
Q Consensus 46 F~~w~~~y~K~Y~~~~E~~~R~~iF~~N~~~I~~~N-~~~~s~~~g~N~FaDlt~eEf 102 (472)
|++|+++|+|.|.+.+|+..|+.+|++|+++|++|| ....+|++|+|+|||||.+||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 899999999999999999999999999999999999 568899999999999999997
No 23
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.54 E-value=1.1e-13 Score=144.15 Aligned_cols=182 Identities=26% Similarity=0.476 Sum_probs=105.3
Q ss_pred CccCCCCCCccHHHHHHHHHHHHHHHHHcC-CCcccCHHHHH----------------hhccC-----------CCCCCC
Q 012022 151 GPVKDQGQCGSCWAFSTVGAVEGINQIVTG-DLISLSEQELV----------------DCDKQ-----------YNQGCN 202 (472)
Q Consensus 151 tpVkdQg~CGsCwAfA~~~alEs~~~i~~~-~~~~LS~q~lv----------------dC~~~-----------~~~gC~ 202 (472)
.||.||+.-|.||.||+...++..+..+.+ +.++||+.++. +.... .....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 499999999999999999999998877665 67899999874 22211 123467
Q ss_pred CCchHHHHHHHHHhCCccCCCCCcCCCCC---------------------------------------------------
Q 012022 203 GGLMDYAFKFIIKNGGIDTEEDYPYKATD--------------------------------------------------- 231 (472)
Q Consensus 203 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~--------------------------------------------------- 231 (472)
||....+...+ +++||++.+.||-+...
T Consensus 136 GGqw~~~~nli-~KYGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 136 GGQWDMVVNLI-KKYGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp -B-HHHHHHHH-HHH---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHH-HHcCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99888887766 55699999999854200
Q ss_pred --CCCCCC------CCC---------------------------------------CceEEee-----------eeEeCC
Q 012022 232 --GSCDPN------RKN---------------------------------------AHVVTID-----------GYEDVP 253 (472)
Q Consensus 232 --~~C~~~------~~~---------------------------------------~~~~~i~-----------~y~~i~ 253 (472)
|.++.. ... .+.+.+. .|.+++
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 000000 000 0111110 122222
Q ss_pred CCh-HHHHHHHHHcC-CeEEEEEecccccccccCceEeCCC-------C---------------CCCCeeEEEEEeec-c
Q 012022 254 QND-EKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGVFTGIC-------G---------------TELDHGVIAVGYGT-D 308 (472)
Q Consensus 254 ~~~-~~~lk~~l~~g-PV~v~i~~~~~~f~~Y~sGIy~~~~-------~---------------~~~~HaV~IVGyg~-~ 308 (472)
.++ .+.+.++|..| ||..+-++. + +...+.||.+... + +..+|||+|||.+. +
T Consensus 295 id~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~ 372 (438)
T PF03051_consen 295 IDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDE 372 (438)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-T
T ss_pred HHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEecc
Confidence 211 12334456677 999999995 4 4566889886421 0 12479999999997 5
Q ss_pred CCe-eEEEEEcCCCCCCCCCceEEEEec
Q 012022 309 GHL-DYWIVRNSWGPDWGESGYIRMERN 335 (472)
Q Consensus 309 ~g~-~yWivkNSWG~~WGe~GY~~i~r~ 335 (472)
+|+ .+|+|+||||++.|.+|||.|+..
T Consensus 373 ~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 373 DGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp TSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred CCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 665 699999999999999999999853
No 24
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.44 E-value=1.1e-13 Score=104.02 Aligned_cols=56 Identities=57% Similarity=1.005 Sum_probs=52.6
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcCC-CCcEEEecccCCCCCHHH
Q 012022 46 YEHWLVKHGKNYNALGEQERRFEIFKDNLKFVNEHNAV-ARTYKVGLNKFADLTNDE 101 (472)
Q Consensus 46 F~~w~~~y~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~-~~s~~~g~N~FaDlt~eE 101 (472)
|++|+.+|+|.|.+.+|...|+.+|.+|+++|+.||+. ..+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 68999999999999999999999999999999999976 479999999999999876
No 25
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.28 E-value=7.3e-06 Score=80.97 Aligned_cols=76 Identities=26% Similarity=0.448 Sum_probs=53.4
Q ss_pred HHHHHHH----HHcC-CeEEEEEecccccccccCceEeCC-------CC--------------C-CCCeeEEEEEeecc-
Q 012022 257 EKSLQKA----VASQ-PVSVAIEAGGMAFQLYKSGVFTGI-------CG--------------T-ELDHGVIAVGYGTD- 308 (472)
Q Consensus 257 ~~~lk~~----l~~g-PV~v~i~~~~~~f~~Y~sGIy~~~-------~~--------------~-~~~HaV~IVGyg~~- 308 (472)
.+.++++ |..| +|-++-++. .+..-+.||.+-. -+ . -..|||+|.|.+.+
T Consensus 297 me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 297 MERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred HHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 4445554 3346 898888874 4666677876421 00 0 12699999999964
Q ss_pred CCe-eEEEEEcCCCCCCCCCceEEEEe
Q 012022 309 GHL-DYWIVRNSWGPDWGESGYIRMER 334 (472)
Q Consensus 309 ~g~-~yWivkNSWG~~WGe~GY~~i~r 334 (472)
+|. --|.|.||||.+=|.+|||-++-
T Consensus 375 ~g~p~rwkVENSWG~d~G~~GyfvaSd 401 (444)
T COG3579 375 TGNPLRWKVENSWGKDVGKKGYFVASD 401 (444)
T ss_pred CCCceeeEeecccccccCCCceEeehH
Confidence 443 46999999999999999998863
No 26
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=96.97 E-value=0.0098 Score=51.72 Aligned_cols=125 Identities=21% Similarity=0.317 Sum_probs=58.4
Q ss_pred ccCCC--CCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhccCCC-------------CCCCCCchHHHHHHHHHh
Q 012022 152 PVKDQ--GQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKQYN-------------QGCNGGLMDYAFKFIIKN 216 (472)
Q Consensus 152 pVkdQ--g~CGsCwAfA~~~alEs~~~i~~~~~~~LS~q~lvdC~~~~~-------------~gC~GG~~~~a~~~~~~~ 216 (472)
|...| ..-..|+..|++-+++.. |. .+++.+|.+-..... .....|.....+..+.+.
T Consensus 4 p~~~Q~~~~~~~Cg~as~~mvl~~~-----g~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (144)
T PF13529_consen 4 PYYSQYDETSYGCGPASAAMVLNYY-----GK--NISQEDLADEAGTNPDGDPNTGFVGNPYYDSGYGTSPDDLARYLEK 76 (144)
T ss_dssp -----TTT-TT-HHHHHHHHHHHHT-----T------HHHHHHHS-EE-E--TTTSEEB-SSTS-B----HHHHHHHHHH
T ss_pred CcEEeCCCCCCcCHHHHHHHHHHHc-----CC--CCCHHHHHHHhhhccCCCCCcccccCccccCCCccccHHHHHHHHH
Confidence 44556 455679999888887654 22 578888877543211 011123333344333333
Q ss_pred CCccCCCCCcCCCCCCCCCCCCCCCceEEeeeeEeCCCChHHHHHHHHHcC-CeEEEEEecccccccccCceEeCCCCCC
Q 012022 217 GGIDTEEDYPYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGVFTGICGTE 295 (472)
Q Consensus 217 ~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~i~~~~~~~lk~~l~~g-PV~v~i~~~~~~f~~Y~sGIy~~~~~~~ 295 (472)
.|+ ........+.+.|++.|.+| ||.+.+....... .++.+. ...
T Consensus 77 ~~~----------------------------~~~~~~~~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~---~~~ 122 (144)
T PF13529_consen 77 YGY----------------------------KATDTSDASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD---GTY 122 (144)
T ss_dssp H-T----------------------------TEEE-TTS-HHHHHHHHHTT--EEEEEETTSS-----TTEEEE---E-T
T ss_pred cCc----------------------------ceeeccCCcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC---CCc
Confidence 232 00111233467889999987 9999886421111 112221 135
Q ss_pred CCeeEEEEEeeccCCeeEEEEEcCC
Q 012022 296 LDHGVIAVGYGTDGHLDYWIVRNSW 320 (472)
Q Consensus 296 ~~HaV~IVGyg~~~g~~yWivkNSW 320 (472)
.+|.|+|+||+++. +++|..+|
T Consensus 123 ~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 123 GGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp TEEEEEEEEE-SSE----EEEE-TT
T ss_pred CCEEEEEEEEeCCC---EEEEeCCC
Confidence 69999999999853 78888877
No 27
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=96.13 E-value=0.0067 Score=60.29 Aligned_cols=76 Identities=29% Similarity=0.358 Sum_probs=51.2
Q ss_pred hHHHHHHHHH----cC-CeEEEEEecccccccccCceEeC-----C--------CCC----------CCCeeEEEEEeec
Q 012022 256 DEKSLQKAVA----SQ-PVSVAIEAGGMAFQLYKSGVFTG-----I--------CGT----------ELDHGVIAVGYGT 307 (472)
Q Consensus 256 ~~~~lk~~l~----~g-PV~v~i~~~~~~f~~Y~sGIy~~-----~--------~~~----------~~~HaV~IVGyg~ 307 (472)
+.+.|++++. .+ ||-++-++. -+..-++|+.+- + ..+ --.|||+|.|-|.
T Consensus 305 ~~d~l~k~vv~sl~~~kaVwfgcd~~--k~~~~K~G~~dl~l~~~~l~fG~~l~~~~KAeRl~y~eSlmthAml~T~v~~ 382 (457)
T KOG4128|consen 305 SMDILMKIVVTSLEGDKAVWFGCDIR--KAISLKSGPLDLRLHQFDLLFGFKLGESTKAERLDYRESLMTHAMLLTSVGL 382 (457)
T ss_pred CHHHHHHHHHHHhcCCcceEEecccH--hhhhcccCccchhhccCceeeeeeccccchhhhhhHHHHHHHHHHHhhhccc
Confidence 3566777653 23 888887763 466667775431 1 001 1269999999982
Q ss_pred -c---CCeeEEEEEcCCCCCCCCCceEEEE
Q 012022 308 -D---GHLDYWIVRNSWGPDWGESGYIRME 333 (472)
Q Consensus 308 -~---~g~~yWivkNSWG~~WGe~GY~~i~ 333 (472)
+ .+-.-|-|.||||++-|.+||..|.
T Consensus 383 kd~~~g~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 383 KDPATGGLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred cCcccCCchhhhhhchhhhhccccchhhhh
Confidence 2 3445699999999999999997764
No 28
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=95.83 E-value=0.0059 Score=42.48 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=21.4
Q ss_pred HHHHHhcCCCCcEEEecccCCCCCHHHHHHhHhcch
Q 012022 75 KFVNEHNAVARTYKVGLNKFADLTNDEFRNMYLGAK 110 (472)
Q Consensus 75 ~~I~~~N~~~~s~~~g~N~FaDlt~eEf~~~~~~~~ 110 (472)
++|+.+|+.+.+|++|.| |.+.+.+.++.+ +|..
T Consensus 4 e~I~~IN~~~~tWkAG~N-F~~~~~~~ik~L-lGv~ 37 (41)
T PF08127_consen 4 EFIDYINSKNTTWKAGRN-FENTSIEYIKRL-LGVL 37 (41)
T ss_dssp HHHHHHHHCT-SEEE-----SSB-HHHHHHC-S-B-
T ss_pred HHHHHHHcCCCcccCCCC-CCCCCHHHHHHH-cCCC
Confidence 578888988899999999 899998888764 5554
No 29
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=94.95 E-value=0.43 Score=43.76 Aligned_cols=119 Identities=15% Similarity=0.260 Sum_probs=66.2
Q ss_pred CCCCCCccHHHHHHHHHHHHHH--------HHHcCCCcccCHHHHHhhccCCCCCCCCCchHHHHHHHHHhCCccCCCCC
Q 012022 154 KDQGQCGSCWAFSTVGAVEGIN--------QIVTGDLISLSEQELVDCDKQYNQGCNGGLMDYAFKFIIKNGGIDTEEDY 225 (472)
Q Consensus 154 kdQg~CGsCwAfA~~~alEs~~--------~i~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~y 225 (472)
..||.=+=|-+||.++.|-... .|.+.-...+|+++|.+++. .+...++|.... |...
T Consensus 17 EtQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~---------~~~~~i~y~ks~-g~~~---- 82 (175)
T PF05543_consen 17 ETQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL---------TPNQMIKYAKSQ-GRNP---- 82 (175)
T ss_dssp ---SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B----------HHHHHHHHHHT-TEEE----
T ss_pred eccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC---------CHHHHHHHHHHc-Ccch----
Confidence 3489999999999999886531 11111235677777776653 245677776443 3211
Q ss_pred cCCCCCCCCCCCCCCCceEEeeeeEeCCCChHHHHHHHHHc-CCeEEEEEecccccccccCceEeCCCCCCCCeeEEEEE
Q 012022 226 PYKATDGSCDPNRKNAHVVTIDGYEDVPQNDEKSLQKAVAS-QPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVG 304 (472)
Q Consensus 226 PY~~~~~~C~~~~~~~~~~~i~~y~~i~~~~~~~lk~~l~~-gPV~v~i~~~~~~f~~Y~sGIy~~~~~~~~~HaV~IVG 304 (472)
.. ....+ +.+++++.+.+ -|+.+....... ..+...+|||+|||
T Consensus 83 -------------------~~--~n~~~--s~~eV~~~~~~nk~i~i~~~~v~~------------~~~~~~gHAlavvG 127 (175)
T PF05543_consen 83 -------------------QY--NNRMP--SFDEVKKLIDNNKGIAILADRVEQ------------TNGPHAGHALAVVG 127 (175)
T ss_dssp -------------------EE--ECS-----HHHHHHHHHTT-EEEEEEEETTS------------CTTB--EEEEEEEE
T ss_pred -------------------hH--hcCCC--CHHHHHHHHHcCCCeEEEeccccc------------CCCCccceeEEEEe
Confidence 00 00111 35677877776 588776654321 12346799999999
Q ss_pred eec-cCCeeEEEEEcCCC
Q 012022 305 YGT-DGHLDYWIVRNSWG 321 (472)
Q Consensus 305 yg~-~~g~~yWivkNSWG 321 (472)
|-. .+|.++.+|=|=|-
T Consensus 128 ya~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 128 YAKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp EEEETTSEEEEEEE-TT-
T ss_pred eeecCCCCeEEEEeCCcc
Confidence 987 56799999988884
No 30
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=84.21 E-value=2 Score=43.16 Aligned_cols=53 Identities=19% Similarity=0.409 Sum_probs=35.8
Q ss_pred HHHHHHHHHcC-CeEEEEEecccccccccCceEeCCCCCCCCeeEEEEEeeccCCeeEEEE
Q 012022 257 EKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIV 316 (472)
Q Consensus 257 ~~~lk~~l~~g-PV~v~i~~~~~~f~~Y~sGIy~~~~~~~~~HaV~IVGyg~~~g~~yWiv 316 (472)
.+.|++.|.+| ||.+.++.+ +..|...-|. ....+|.|+|+||++++ ..|.++
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~~---~~~~~H~i~v~G~d~~~-~~~~v~ 131 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYYK---KHHADHYIVVYGYDEEE-DVFYVS 131 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCccccc---cccCCcEEEEEEEeCCC-CEEEEE
Confidence 45678888888 999998765 3444433221 12458999999999763 356665
No 31
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.55 E-value=4 Score=37.68 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=36.4
Q ss_pred eCCCChHHHHHHHHHcC-CeEEEEEecccccccccCceEeCCCCCCCCeeEEEEEeeccCCeeEEEEEcCCC
Q 012022 251 DVPQNDEKSLQKAVASQ-PVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVRNSWG 321 (472)
Q Consensus 251 ~i~~~~~~~lk~~l~~g-PV~v~i~~~~~~f~~Y~sGIy~~~~~~~~~HaV~IVGyg~~~g~~yWivkNSWG 321 (472)
.+...+...|+.+|.+| ||.+-.-. |.. ..-|+|+|.||++ .|+..-++||
T Consensus 117 d~tGksl~~ik~ql~kg~PV~iw~T~----~~~------------~s~H~v~itgyDk----~n~yynDpyG 168 (195)
T COG4990 117 DLTGKSLSDIKGQLLKGRPVVIWVTN----FHS------------YSIHSVLITGYDK----YNIYYNDPYG 168 (195)
T ss_pred cCcCCcHHHHHHHHhcCCcEEEEEec----ccc------------cceeeeEeecccc----cceEeccccc
Confidence 45566788999999886 98765533 322 3369999999996 4566667774
No 32
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=64.93 E-value=17 Score=31.26 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=28.9
Q ss_pred HHHHHHcC-CeEEEEEecccccccccCceEeCCCCCCCCeeEEEEEeeccCCeeEEEEEcCC
Q 012022 260 LQKAVASQ-PVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVRNSW 320 (472)
Q Consensus 260 lk~~l~~g-PV~v~i~~~~~~f~~Y~sGIy~~~~~~~~~HaV~IVGyg~~~g~~yWivkNSW 320 (472)
+++.+..| ||.+.+... ......+|.|+|+||+. .+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~--------------~~~~~~gH~vVv~g~~~---~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG--------------VSITPSGHAMVVIGYDR---KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC--------------cccCCCCeEEEEEEEcC---CCCEEEECCC
Confidence 66777775 998876531 01124589999999982 1335666765
No 33
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=59.33 E-value=32 Score=32.87 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=31.9
Q ss_pred hHHHHHHHHHcC-CeEEEEEeccccccc---ccCceEeC----CC---CCCCCeeEEEEEeeccCCeeEEEEEc
Q 012022 256 DEKSLQKAVASQ-PVSVAIEAGGMAFQL---YKSGVFTG----IC---GTELDHGVIAVGYGTDGHLDYWIVRN 318 (472)
Q Consensus 256 ~~~~lk~~l~~g-PV~v~i~~~~~~f~~---Y~sGIy~~----~~---~~~~~HaV~IVGyg~~~g~~yWivkN 318 (472)
..++|.+.|..| |+.+-++.. +.. -+...... .. ....+|-|+|+||+.+.+. ++++|
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~---~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~~--~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDAS---LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATKE--FEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccc---cccChhhcccccccccccccCCCCCccEEEEEEEeecCCCCe--EEEeC
Confidence 356777777775 655555543 221 13322221 11 2345999999999976433 44443
No 34
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=58.58 E-value=35 Score=34.46 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.8
Q ss_pred CCeeEEEEEeeccC--CeeEEEEEcCCCC
Q 012022 296 LDHGVIAVGYGTDG--HLDYWIVRNSWGP 322 (472)
Q Consensus 296 ~~HaV~IVGyg~~~--g~~yWivkNSWG~ 322 (472)
.+||=.|++.-.-+ +.....+||-||.
T Consensus 235 ~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 235 KGHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred cCcceEEeEEEEEccCceEEEEecCCccC
Confidence 48999999998766 8899999999994
No 35
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=45.99 E-value=16 Score=25.43 Aligned_cols=18 Identities=39% Similarity=0.982 Sum_probs=14.5
Q ss_pred CCCCCCCCcccCCCCcee
Q 012022 376 SPTVCDDYYTCPSGSTCC 393 (472)
Q Consensus 376 ~~~~c~~~~~c~~~~tcc 393 (472)
..+.|.....||.+.+|=
T Consensus 15 ~~~~C~~~~~CP~~y~C~ 32 (45)
T PF14625_consen 15 QPVSCSPDNSCPSGYSCH 32 (45)
T ss_pred CeeECcCCCCCCCcCEee
Confidence 347897777899999984
No 36
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=34.47 E-value=3.6e+02 Score=24.62 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=26.0
Q ss_pred HHHHHHHHHc-CCeEEEEEecccccccccCceEeCCCCCCCCeeEEEEEeecc
Q 012022 257 EKSLQKAVAS-QPVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTD 308 (472)
Q Consensus 257 ~~~lk~~l~~-gPV~v~i~~~~~~f~~Y~sGIy~~~~~~~~~HaV~IVGyg~~ 308 (472)
.+.+..+|.+ ||+-++..... +.-..|+++|.|-..+
T Consensus 98 ~e~~~~LL~~yGPLwv~~~~P~---------------~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 98 AEGLANLLREYGPLWVAWEAPG---------------DSWVAHASVITGIDGD 135 (166)
T ss_pred HHHHHHHHHHcCCeEEEecCCC---------------CcceeeEEEEEeecCC
Confidence 5678888876 99999865531 1234699999888754
No 37
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=30.92 E-value=2.3e+02 Score=26.38 Aligned_cols=49 Identities=29% Similarity=0.695 Sum_probs=29.0
Q ss_pred HHHHHHHHcC-CeEEEEEecccccccccCceEeCCCCCCCCeeEEEEEeeccCCeeEEEEEcCCCCCCC--CCceEE
Q 012022 258 KSLQKAVASQ-PVSVAIEAGGMAFQLYKSGVFTGICGTELDHGVIAVGYGTDGHLDYWIVRNSWGPDWG--ESGYIR 331 (472)
Q Consensus 258 ~~lk~~l~~g-PV~v~i~~~~~~f~~Y~sGIy~~~~~~~~~HaV~IVGyg~~~g~~yWivkNSWG~~WG--e~GY~~ 331 (472)
+.|+..|.+| ||.+.-... ..+||.+|=||..+ .||-+ -|| || .+||++
T Consensus 141 ~~i~~el~~~rPV~~~g~~~------------------~~GHawViDGy~~~---~~~H~--NwG--W~G~~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSK------------------SGGHAWVIDGYDSD---GYFHC--NWG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEET------------------TEEEEEEEEEEESS---SEEEE--E-S--STTTT-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecC------------------CCCeEEEEcCccCC---CeEEE--eeC--ccCCCCCccC
Confidence 4566666664 987654321 11999999999643 56654 454 54 469985
No 38
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=30.67 E-value=24 Score=19.97 Aligned_cols=11 Identities=9% Similarity=0.286 Sum_probs=4.8
Q ss_pred ChhHHHHHHHH
Q 012022 1 MVTTFLCLCFF 11 (472)
Q Consensus 1 m~~~~~~~~l~ 11 (472)
|+..++++.|+
T Consensus 2 Mk~vIIlvvLL 12 (19)
T PF13956_consen 2 MKLVIILVVLL 12 (19)
T ss_pred ceehHHHHHHH
Confidence 44444444433
No 39
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=26.28 E-value=44 Score=23.85 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=11.2
Q ss_pred ChhHHHHHHHHHHHH
Q 012022 1 MVTTFLCLCFFLFTS 15 (472)
Q Consensus 1 m~~~~~~~~l~~~~~ 15 (472)
|++++++|+++-++.
T Consensus 3 lKKsllLlfflG~IS 17 (46)
T PF03032_consen 3 LKKSLLLLFFLGTIS 17 (46)
T ss_pred chHHHHHHHHHHHcc
Confidence 788888888776663
No 40
>smart00289 WR1 Worm-specific repeat type 1. Worm-specific repeat type 1. Cysteine-rich domain apparently unique (so far) to C. elegans. Often appears with KU domains. About 3 dozen worm proteins contain this domain.
Probab=25.84 E-value=54 Score=21.60 Aligned_cols=17 Identities=41% Similarity=0.972 Sum_probs=14.0
Q ss_pred CCCCCCCcccCCCCcee
Q 012022 377 PTVCDDYYTCPSGSTCC 393 (472)
Q Consensus 377 ~~~c~~~~~c~~~~tcc 393 (472)
...|.....||++.+|=
T Consensus 13 ~~~C~~~~~CP~g~~C~ 29 (38)
T smart00289 13 PVRCSPNGSCPSGYSCQ 29 (38)
T ss_pred CeECCCCCCCCCCCEEe
Confidence 36788788899999984
No 41
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.81 E-value=1.5e+02 Score=23.17 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCccCChHHHHHHHHHHHHHHHH
Q 012022 44 MMYEHWLVKHGKNYNALGEQERRFEIFKDNLKF 76 (472)
Q Consensus 44 ~~F~~w~~~y~K~Y~~~~E~~~R~~iF~~N~~~ 76 (472)
..|++|+.+|.+.-.+. |...|.+-|.+-++.
T Consensus 29 e~Fee~v~~~krel~pp-e~~~~~EE~~~~lRe 60 (77)
T KOG4702|consen 29 EIFEEFVRGYKRELSPP-EATKRKEEYENFLRE 60 (77)
T ss_pred HHHHHHHHhccccCCCh-HHHhhHHHHHHHHHH
Confidence 45999999999987664 666777777765543
No 42
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.65 E-value=52 Score=28.04 Aligned_cols=19 Identities=21% Similarity=0.245 Sum_probs=13.9
Q ss_pred ChhHHHHHHHHHHHHhhcc
Q 012022 1 MVTTFLCLCFFLFTSTFAL 19 (472)
Q Consensus 1 m~~~~~~~~l~~~~~~~~~ 19 (472)
||++|++++++++.+.+.+
T Consensus 1 MKk~~ll~~~ll~s~~a~A 19 (114)
T PF11777_consen 1 MKKIILLASLLLLSSSAFA 19 (114)
T ss_pred CchHHHHHHHHHHHHHHhh
Confidence 8999998877766665444
No 43
>PF15240 Pro-rich: Proline-rich
Probab=25.00 E-value=56 Score=30.31 Aligned_cols=14 Identities=14% Similarity=0.465 Sum_probs=7.4
Q ss_pred ChhHHHHHHHHHHH
Q 012022 1 MVTTFLCLCFFLFT 14 (472)
Q Consensus 1 m~~~~~~~~l~~~~ 14 (472)
|+++||.+.||+|.
T Consensus 1 MLlVLLSvALLALS 14 (179)
T PF15240_consen 1 MLLVLLSVALLALS 14 (179)
T ss_pred ChhHHHHHHHHHhh
Confidence 65555555544444
No 44
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.22 E-value=56 Score=27.83 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=14.8
Q ss_pred ChhHHH-HHHHHHHHHhhcccccccccc
Q 012022 1 MVTTFL-CLCFFLFTSTFALDMSIIDYN 27 (472)
Q Consensus 1 m~~~~~-~~~l~~~~~~~~~~~~~~~~~ 27 (472)
|+++++ |+.|++++.++..-.-.+.||
T Consensus 1 MKkil~~ilall~~ii~a~~~~~~~~~d 28 (113)
T COG5294 1 MKKILIGILALLLIIIGALFIFYNINYD 28 (113)
T ss_pred CcchHHHHHHHHHHHHhhheEEEecccC
Confidence 888777 455555554554444334444
No 45
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=23.82 E-value=80 Score=35.79 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=9.8
Q ss_pred CCccccCCCCceee
Q 012022 340 TGKCGIAIEPSYPI 353 (472)
Q Consensus 340 ~~~CgI~~~~~yp~ 353 (472)
...|||-.-+.-|-
T Consensus 522 ~~~~~iP~PP~~pp 535 (1102)
T KOG1924|consen 522 PIDGGIPPPPPLPP 535 (1102)
T ss_pred CCCCCCCCCCCCCC
Confidence 45788877777664
No 46
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=23.73 E-value=35 Score=20.66 Aligned_cols=10 Identities=60% Similarity=1.710 Sum_probs=5.7
Q ss_pred ccc-cCCCcee
Q 012022 406 GCC-PIESATC 415 (472)
Q Consensus 406 ~cc-p~~~a~c 415 (472)
||| |||+|.|
T Consensus 1 gccg~ypnaac 11 (26)
T PF07829_consen 1 GCCGPYPNAAC 11 (26)
T ss_dssp --STTSSSSS-
T ss_pred CCccCCCCccc
Confidence 455 5999988
No 47
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=23.58 E-value=66 Score=34.22 Aligned_cols=8 Identities=88% Similarity=1.983 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 012022 359 PPNPGPSP 366 (472)
Q Consensus 359 ~p~p~~~p 366 (472)
+|.|.|+|
T Consensus 6 ~P~P~P~P 13 (465)
T PF01690_consen 6 PPSPGPSP 13 (465)
T ss_pred CCCCCCCC
Confidence 44444444
No 48
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=23.20 E-value=57 Score=30.53 Aligned_cols=7 Identities=14% Similarity=-0.121 Sum_probs=3.0
Q ss_pred ChhHHHH
Q 012022 1 MVTTFLC 7 (472)
Q Consensus 1 m~~~~~~ 7 (472)
||++|+|
T Consensus 1 MKll~~l 7 (212)
T PF11912_consen 1 MKLLISL 7 (212)
T ss_pred CcHHHHH
Confidence 5554333
No 49
>COG5510 Predicted small secreted protein [Function unknown]
Probab=21.25 E-value=91 Score=21.97 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=8.7
Q ss_pred ChhHHHHHHHHHHHH
Q 012022 1 MVTTFLCLCFFLFTS 15 (472)
Q Consensus 1 m~~~~~~~~l~~~~~ 15 (472)
|+++++++++++++.
T Consensus 2 mk~t~l~i~~vll~s 16 (44)
T COG5510 2 MKKTILLIALVLLAS 16 (44)
T ss_pred chHHHHHHHHHHHHH
Confidence 677666655555444
No 50
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=20.91 E-value=74 Score=23.96 Aligned_cols=8 Identities=13% Similarity=0.127 Sum_probs=4.9
Q ss_pred cccccccC
Q 012022 23 IIDYNRMH 30 (472)
Q Consensus 23 ~~~~~~~~ 30 (472)
.-+||+..
T Consensus 30 eP~YDEdd 37 (65)
T PF10731_consen 30 EPSYDEDD 37 (65)
T ss_pred CCCcCccc
Confidence 35677655
Done!