Query 012024
Match_columns 472
No_of_seqs 218 out of 1459
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:49:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 2E-104 5E-109 827.7 50.4 464 2-466 73-536 (539)
2 PLN02991 oxidoreductase 100.0 5E-104 1E-108 821.2 49.4 464 2-466 72-535 (543)
3 PLN02354 copper ion binding / 100.0 9E-103 2E-107 816.9 48.8 468 2-470 71-547 (552)
4 PLN02792 oxidoreductase 100.0 2E-102 4E-107 810.6 49.7 465 2-467 60-529 (536)
5 PLN00044 multi-copper oxidase- 100.0 4E-102 9E-107 811.1 49.0 469 2-471 73-564 (596)
6 PLN02168 copper ion binding / 100.0 2E-101 3E-106 804.1 48.7 462 2-463 70-543 (545)
7 KOG1263 Multicopper oxidases [ 100.0 2.9E-95 6E-100 751.4 48.4 466 2-468 72-562 (563)
8 TIGR03389 laccase laccase, pla 100.0 1.2E-93 2.6E-98 753.4 49.6 451 2-461 47-539 (539)
9 PLN02191 L-ascorbate oxidase 100.0 1.7E-91 3.7E-96 737.0 47.4 447 2-466 67-566 (574)
10 TIGR03388 ascorbase L-ascorbat 100.0 3.5E-91 7.7E-96 734.2 46.9 443 2-462 45-539 (541)
11 PLN02604 oxidoreductase 100.0 3.4E-90 7.3E-95 728.8 48.5 447 2-465 68-565 (566)
12 TIGR03390 ascorbOXfungal L-asc 100.0 5.8E-89 1.3E-93 715.4 45.1 433 2-446 52-536 (538)
13 PRK10965 multicopper oxidase; 100.0 4E-73 8.6E-78 590.9 37.5 367 2-442 90-523 (523)
14 TIGR01480 copper_res_A copper- 100.0 1.4E-72 3E-77 591.0 40.4 382 2-441 89-586 (587)
15 PRK10883 FtsI repressor; Provi 100.0 1.8E-71 4E-76 573.6 35.9 358 2-444 90-470 (471)
16 COG2132 SufI Putative multicop 100.0 9.3E-58 2E-62 473.6 34.4 370 2-443 77-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 9.8E-39 2.1E-43 313.6 17.1 214 2-228 72-299 (311)
18 PF07731 Cu-oxidase_2: Multico 100.0 2E-31 4.2E-36 232.8 10.5 107 337-443 30-136 (138)
19 PF00394 Cu-oxidase: Multicopp 100.0 7.3E-29 1.6E-33 221.4 13.0 137 90-226 1-158 (159)
20 PF07732 Cu-oxidase_3: Multico 99.9 2.8E-27 6.1E-32 199.0 5.6 77 2-78 39-116 (117)
21 TIGR02376 Cu_nitrite_red nitri 99.6 1.4E-13 3E-18 135.7 22.2 243 120-442 47-296 (311)
22 TIGR03095 rusti_cyanin rusticy 99.5 3E-14 6.5E-19 124.4 6.4 74 2-76 65-148 (148)
23 TIGR01480 copper_res_A copper- 99.0 3.3E-10 7.1E-15 120.2 5.4 73 2-76 512-587 (587)
24 PLN02604 oxidoreductase 99.0 2.3E-09 5.1E-14 114.2 10.7 89 343-445 57-146 (566)
25 TIGR03389 laccase laccase, pla 98.9 8.7E-08 1.9E-12 101.9 19.7 236 121-427 23-264 (539)
26 PLN02835 oxidoreductase 98.8 2.2E-07 4.8E-12 98.3 20.0 223 121-424 49-276 (539)
27 PLN02354 copper ion binding / 98.8 3.4E-07 7.3E-12 97.1 19.3 232 121-426 47-283 (552)
28 PLN02792 oxidoreductase 98.8 4.7E-07 1E-11 95.6 19.0 226 121-424 36-267 (536)
29 PF07732 Cu-oxidase_3: Multico 98.7 4.6E-08 1E-12 82.3 8.3 90 341-444 26-116 (117)
30 TIGR03390 ascorbOXfungal L-asc 98.7 1.2E-06 2.7E-11 93.0 20.8 235 121-418 28-266 (538)
31 PLN02168 copper ion binding / 98.7 1.2E-06 2.6E-11 92.6 20.5 216 121-417 46-267 (545)
32 PLN02991 oxidoreductase 98.7 7.7E-07 1.7E-11 93.9 18.8 224 121-423 48-276 (543)
33 PLN00044 multi-copper oxidase- 98.6 4E-06 8.6E-11 89.3 20.2 236 121-422 49-291 (596)
34 PRK10883 FtsI repressor; Provi 98.5 5E-06 1.1E-10 86.9 18.7 224 121-425 66-295 (471)
35 TIGR03388 ascorbase L-ascorbat 98.4 1.1E-06 2.4E-11 93.5 10.1 89 342-444 33-122 (541)
36 PRK10965 multicopper oxidase; 98.4 2E-05 4.2E-10 83.4 19.1 227 121-425 66-298 (523)
37 PLN02191 L-ascorbate oxidase 98.4 2.3E-05 5E-10 83.8 18.8 249 120-419 42-295 (574)
38 PF00394 Cu-oxidase: Multicopp 98.2 6E-06 1.3E-10 73.6 7.7 92 340-442 59-156 (159)
39 PF07731 Cu-oxidase_2: Multico 98.1 3.5E-05 7.6E-10 66.8 11.2 78 130-209 32-120 (138)
40 TIGR03095 rusti_cyanin rusticy 98.1 2E-05 4.3E-10 69.0 9.3 88 341-441 52-147 (148)
41 KOG1263 Multicopper oxidases [ 98.0 0.00066 1.4E-08 71.9 20.5 228 121-426 48-286 (563)
42 TIGR02656 cyanin_plasto plasto 97.7 0.00015 3.2E-09 59.2 7.8 82 341-441 17-98 (99)
43 TIGR03096 nitroso_cyanin nitro 97.5 0.00052 1.1E-08 58.4 7.9 59 342-427 62-120 (135)
44 COG2132 SufI Putative multicop 97.4 0.0038 8.2E-08 65.3 14.7 86 121-209 343-434 (451)
45 PF13473 Cupredoxin_1: Cupredo 96.9 0.0027 5.9E-08 52.1 6.7 62 342-432 36-97 (104)
46 TIGR02656 cyanin_plasto plasto 96.8 0.0013 2.9E-08 53.5 4.1 37 35-76 63-99 (99)
47 PF00127 Copper-bind: Copper b 96.8 0.0019 4.2E-08 52.5 4.6 36 36-76 64-99 (99)
48 TIGR03096 nitroso_cyanin nitro 96.3 0.014 2.9E-07 49.9 7.0 67 124-208 53-119 (135)
49 PF00127 Copper-bind: Copper b 96.3 0.03 6.5E-07 45.5 8.6 83 341-442 17-99 (99)
50 PRK02710 plastocyanin; Provisi 96.0 0.03 6.6E-07 47.1 7.8 71 342-441 48-118 (119)
51 PRK02888 nitrous-oxide reducta 95.9 0.029 6.2E-07 59.7 8.6 75 341-442 555-633 (635)
52 TIGR02375 pseudoazurin pseudoa 95.7 0.056 1.2E-06 45.2 7.9 76 341-445 15-90 (116)
53 TIGR02657 amicyanin amicyanin. 95.3 0.14 3.1E-06 40.0 8.3 71 342-441 12-82 (83)
54 PF13473 Cupredoxin_1: Cupredo 95.2 0.058 1.2E-06 44.2 6.2 65 126-208 29-93 (104)
55 PRK02710 plastocyanin; Provisi 94.8 0.08 1.7E-06 44.6 6.0 37 35-76 83-119 (119)
56 TIGR03102 halo_cynanin halocya 93.8 0.45 9.8E-06 39.7 8.4 72 342-441 43-114 (115)
57 TIGR02657 amicyanin amicyanin. 93.7 0.2 4.4E-06 39.1 6.0 34 36-76 50-83 (83)
58 PRK02888 nitrous-oxide reducta 93.0 0.13 2.9E-06 54.7 5.0 42 36-78 593-635 (635)
59 TIGR02866 CoxB cytochrome c ox 92.8 0.49 1.1E-05 43.7 8.0 77 341-445 117-194 (201)
60 PF06525 SoxE: Sulfocyanin (So 92.3 0.23 5E-06 45.0 4.9 44 35-79 146-189 (196)
61 PF00116 COX2: Cytochrome C ox 91.8 1.5 3.3E-05 36.8 9.2 73 341-441 46-119 (120)
62 TIGR03102 halo_cynanin halocya 91.7 0.27 5.9E-06 41.0 4.3 36 36-76 80-115 (115)
63 COG4454 Uncharacterized copper 91.5 0.73 1.6E-05 40.1 6.8 93 343-442 65-157 (158)
64 COG4454 Uncharacterized copper 90.6 0.61 1.3E-05 40.6 5.5 75 131-209 62-142 (158)
65 TIGR03094 sulfo_cyanin sulfocy 90.1 0.55 1.2E-05 41.9 4.9 43 36-79 146-188 (195)
66 TIGR02375 pseudoazurin pseudoa 89.8 0.61 1.3E-05 39.0 4.8 38 37-79 53-90 (116)
67 COG3794 PetE Plastocyanin [Ene 88.4 2.6 5.6E-05 35.8 7.6 74 342-443 55-128 (128)
68 COG1622 CyoA Heme/copper-type 88.3 1.8 4E-05 41.2 7.5 77 341-445 137-214 (247)
69 COG3794 PetE Plastocyanin [Ene 85.1 1.2 2.6E-05 37.8 3.9 36 37-77 93-128 (128)
70 PF12690 BsuPI: Intracellular 85.1 3.1 6.7E-05 32.4 6.0 65 142-207 4-82 (82)
71 PF00116 COX2: Cytochrome C ox 83.4 17 0.00037 30.5 10.2 63 131-212 45-107 (120)
72 PF14344 DUF4397: Domain of un 79.0 34 0.00074 28.4 10.7 21 143-163 3-24 (122)
73 MTH00140 COX2 cytochrome c oxi 77.4 10 0.00022 35.8 7.6 78 340-445 139-217 (228)
74 PTZ00047 cytochrome c oxidase 76.9 11 0.00025 33.2 7.2 75 342-444 74-149 (162)
75 MTH00047 COX2 cytochrome c oxi 74.8 23 0.00051 32.4 9.1 77 341-445 116-193 (194)
76 TIGR01433 CyoA cytochrome o ub 74.7 11 0.00024 35.5 7.1 76 342-445 140-216 (226)
77 PF04151 PPC: Bacterial pre-pe 66.3 32 0.0007 25.4 6.8 65 132-208 5-69 (70)
78 TIGR01432 QOXA cytochrome aa3 65.7 21 0.00045 33.4 6.8 77 342-446 131-208 (217)
79 MTH00023 COX2 cytochrome c oxi 64.2 31 0.00068 32.8 7.8 77 341-445 151-228 (240)
80 PF11142 DUF2917: Protein of u 63.9 27 0.00059 25.6 5.7 31 133-168 1-31 (63)
81 PF06525 SoxE: Sulfocyanin (So 63.4 53 0.0012 30.0 8.6 96 342-444 87-188 (196)
82 PF12690 BsuPI: Intracellular 63.2 7.4 0.00016 30.3 2.8 57 1-57 6-80 (82)
83 PF10633 NPCBM_assoc: NPCBM-as 62.3 64 0.0014 24.4 8.0 65 136-209 1-75 (78)
84 TIGR03094 sulfo_cyanin sulfocy 62.1 64 0.0014 29.1 8.6 94 342-442 86-185 (195)
85 MTH00098 COX2 cytochrome c oxi 58.7 45 0.00098 31.4 7.7 76 341-444 140-216 (227)
86 PF07691 PA14: PA14 domain; I 58.4 68 0.0015 27.1 8.4 62 133-199 53-121 (145)
87 PF01835 A2M_N: MG2 domain; I 57.8 34 0.00074 27.1 6.0 69 136-209 11-85 (99)
88 MTH00008 COX2 cytochrome c oxi 57.5 50 0.0011 31.1 7.8 76 341-444 140-216 (228)
89 TIGR02866 CoxB cytochrome c ox 57.2 71 0.0015 29.3 8.7 62 132-212 117-178 (201)
90 MTH00185 COX2 cytochrome c oxi 55.8 58 0.0013 30.7 7.9 77 340-444 139-216 (230)
91 MTH00129 COX2 cytochrome c oxi 54.3 49 0.0011 31.2 7.2 76 341-444 140-216 (230)
92 smart00758 PA14 domain in bact 53.7 1E+02 0.0023 25.8 8.7 62 133-199 51-113 (136)
93 MTH00038 COX2 cytochrome c oxi 52.5 61 0.0013 30.5 7.5 76 341-444 140-216 (229)
94 PF07705 CARDB: CARDB; InterP 50.9 1.2E+02 0.0025 23.6 9.5 66 135-209 14-83 (101)
95 COG3354 FlaG Putative archaeal 49.6 1.7E+02 0.0038 25.3 9.3 84 121-209 51-142 (154)
96 MTH00117 COX2 cytochrome c oxi 46.7 90 0.0019 29.4 7.7 76 341-444 140-216 (227)
97 MTH00076 COX2 cytochrome c oxi 46.5 84 0.0018 29.6 7.4 76 341-444 140-216 (228)
98 MTH00051 COX2 cytochrome c oxi 45.7 98 0.0021 29.3 7.8 76 341-444 144-220 (234)
99 PRK10378 inactive ferrous ion 45.3 26 0.00057 35.5 4.0 40 34-79 80-119 (375)
100 COG4263 NosZ Nitrous oxide red 44.7 67 0.0015 33.2 6.7 39 399-437 592-634 (637)
101 PF11614 FixG_C: IG-like fold 44.3 63 0.0014 26.7 5.7 47 141-196 34-82 (118)
102 COG1622 CyoA Heme/copper-type 44.3 1.5E+02 0.0032 28.4 8.7 62 132-212 137-198 (247)
103 PRK10525 cytochrome o ubiquino 44.1 65 0.0014 31.9 6.5 73 342-442 152-225 (315)
104 COG1470 Predicted membrane pro 43.6 2E+02 0.0044 30.0 9.9 87 132-227 389-483 (513)
105 MTH00154 COX2 cytochrome c oxi 40.8 1.2E+02 0.0027 28.4 7.6 76 341-444 140-216 (227)
106 MTH00027 COX2 cytochrome c oxi 39.7 97 0.0021 29.9 6.8 77 341-445 174-251 (262)
107 PRK10378 inactive ferrous ion 38.5 1.1E+02 0.0024 31.1 7.3 84 123-227 34-118 (375)
108 MTH00168 COX2 cytochrome c oxi 38.0 1.2E+02 0.0025 28.5 7.0 77 340-444 139-216 (225)
109 MTH00139 COX2 cytochrome c oxi 36.7 1.4E+02 0.003 28.1 7.3 77 340-444 139-216 (226)
110 PF14392 zf-CCHC_4: Zinc knuck 35.1 54 0.0012 22.6 3.2 40 394-433 5-45 (49)
111 MTH00080 COX2 cytochrome c oxi 34.8 1.6E+02 0.0036 27.7 7.4 77 341-445 143-220 (231)
112 TIGR02695 azurin azurin. Azuri 33.7 53 0.0012 27.7 3.5 40 34-74 83-124 (125)
113 COG2967 ApaG Uncharacterized p 31.7 29 0.00063 28.8 1.5 51 4-54 37-95 (126)
114 cd00918 Der-p2_like Several gr 30.6 56 0.0012 27.4 3.2 24 26-49 65-88 (120)
115 PRK05461 apaG CO2+/MG2+ efflux 29.6 32 0.00069 29.2 1.6 21 26-46 66-86 (127)
116 PF14524 Wzt_C: Wzt C-terminal 28.9 2.8E+02 0.0061 22.9 7.5 74 133-209 28-107 (142)
117 KOG1554 COP9 signalosome, subu 28.5 43 0.00093 32.3 2.3 9 54-62 134-142 (347)
118 cd08058 MPN_euk_mb Mpr1p, Pad1 27.7 26 0.00056 29.1 0.7 6 56-61 70-75 (119)
119 PF05938 Self-incomp_S1: Plant 26.1 1.6E+02 0.0035 23.9 5.2 72 1-82 3-75 (110)
120 PF10989 DUF2808: Protein of u 26.0 83 0.0018 27.3 3.6 29 33-61 96-127 (146)
121 MTH00047 COX2 cytochrome c oxi 25.6 5.2E+02 0.011 23.6 8.9 60 133-211 117-176 (194)
122 PF15415 DUF4622: Protein of u 25.3 1.7E+02 0.0037 27.6 5.5 43 132-176 94-138 (310)
123 PF04379 DUF525: Protein of un 24.9 61 0.0013 25.7 2.3 29 26-54 49-79 (90)
124 PF14874 PapD-like: Flagellar- 24.4 3.5E+02 0.0076 21.2 8.5 59 136-205 16-82 (102)
125 PF05506 DUF756: Domain of unk 24.0 3.4E+02 0.0074 21.0 8.3 58 140-208 20-77 (89)
126 PF10989 DUF2808: Protein of u 23.9 92 0.002 27.0 3.5 25 403-427 99-127 (146)
127 KOG4063 Major epididymal secre 22.9 65 0.0014 28.0 2.2 18 32-49 106-123 (158)
128 PRK09918 putative fimbrial cha 22.9 2.5E+02 0.0054 26.4 6.5 21 130-150 74-94 (230)
129 PF14734 DUF4469: Domain of un 22.8 2.5E+02 0.0053 22.9 5.5 37 176-212 52-88 (102)
130 cd02861 E_set_proteins_like E 22.5 93 0.002 23.8 2.9 40 26-69 34-74 (82)
131 cd00916 Npc2_like Niemann-Pick 22.4 72 0.0016 26.7 2.4 18 32-49 75-92 (123)
132 TIGR02745 ccoG_rdxA_fixG cytoc 22.1 2.8E+02 0.0061 28.9 7.1 48 141-196 349-397 (434)
133 PRK15249 fimbrial chaperone pr 21.7 1.2E+02 0.0025 29.1 4.0 21 130-150 84-104 (253)
134 cd00912 ML The ML (MD-2-relate 21.6 79 0.0017 26.5 2.5 18 32-49 78-95 (127)
135 KOG1555 26S proteasome regulat 21.3 36 0.00079 33.4 0.4 8 55-62 119-126 (316)
136 TIGR01433 CyoA cytochrome o ub 21.1 4.1E+02 0.009 24.9 7.5 30 181-211 170-199 (226)
137 PF02221 E1_DerP2_DerF2: ML do 20.3 75 0.0016 26.6 2.2 18 32-49 84-101 (134)
138 PRK09926 putative chaperone pr 20.2 1.2E+02 0.0026 28.8 3.8 22 130-151 80-101 (246)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=2.4e-104 Score=827.71 Aligned_cols=464 Identities=61% Similarity=1.057 Sum_probs=375.6
Q ss_pred cccccccCCeeEeccCCCCCCCCCCCCCCccCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCCCC
Q 012024 2 SLTATSIRSAFANGNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRI 81 (472)
Q Consensus 2 ~~~n~l~~~tsiHwHG~~~~~~~~~DGv~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~ 81 (472)
-|+|+|+++|+|||||++|.+++|||||++|||||+||++|+|+|++++|+||||||||++.|+++||+|+|||+++++.
T Consensus 73 ~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~ 152 (539)
T PLN02835 73 NLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRI 152 (539)
T ss_pred EEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCC
Confidence 47899999999999999999999999999999999999999999998778999999999999999999999999876555
Q ss_pred CCCCCCCCCccEEEEeccccCCHHHHHHHhhcCCCCCCCCeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeC
Q 012024 82 PVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDKGKKLPLPDGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQN 161 (472)
Q Consensus 82 ~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~ 161 (472)
+.+|+.+++|++|+|+||++++...+...+..+...+++|++||||+.. +.++|++|++|||||||+|..+.+.|+|+|
T Consensus 153 ~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~-~~~~v~~G~~yRlRliNa~~~~~~~f~i~g 231 (539)
T PLN02835 153 PIPFPLPDGDFTLLVGDWYKTSHKTLQQRLDSGKVLPFPDGVLINGQTQ-STFSGDQGKTYMFRISNVGLSTSLNFRIQG 231 (539)
T ss_pred CcCCCCCCceEEEEeeccccCCHHHHHHHhhcCCCCCCCceEEEccccC-ceEEECCCCEEEEEEEEcCCCccEEEEECC
Confidence 6667678999999999999998777666666676678899999999974 799999999999999999999999999999
Q ss_pred ceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeeeecCCCCceEEEEEEeCCCCCCCCCCCCCCCc
Q 012024 162 HKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTV 241 (472)
Q Consensus 162 h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~ 241 (472)
|+|+|||+||++++|..++.|.|++||||||+|++++++|+|||++...+........|+|+|++...+.+.++|..|..
T Consensus 232 H~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~ 311 (539)
T PLN02835 232 HTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSG 311 (539)
T ss_pred CEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999988899999986544333457899999987643322234433321
Q ss_pred cccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEecccccccCCeEeEEEcCeeccCCCCccccccccccCce
Q 012024 242 QIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGV 321 (472)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~ 321 (472)
+.......+......+.+....+.+..+........++++.+.......+|...|+|||++|..|++|+|++.+++.++.
T Consensus 312 ~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~ 391 (539)
T PLN02835 312 ELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGV 391 (539)
T ss_pred ccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCc
Confidence 11112222222222333333333333222222223455554433222234667899999999989999988777666677
Q ss_pred eecCCCCCCCCCCCcccceeEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceE
Q 012024 322 FRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTV 401 (472)
Q Consensus 322 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv 401 (472)
|+.+.....+.+...+.++.++.++.|++|||+|+|.+...||||||||+||||++|.|.|++.....+|+.||++||||
T Consensus 392 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv 471 (539)
T PLN02835 392 FSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTA 471 (539)
T ss_pred cccCccccCCCCCccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceE
Confidence 76543322333333556788999999999999999998889999999999999999999998665556799999999999
Q ss_pred EeCCCCEEEEEEEecCceeeEeeecchhHHhcccEEEEEEecCCccccccCCCCccchhhccccC
Q 012024 402 QVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLRDEYPIPKNARLCGKAAG 466 (472)
Q Consensus 402 ~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~ 466 (472)
.|+++||++|||+|||||+|+|||||++|+..||+++|+|.++.+...+.+++|+++++||.-++
T Consensus 472 ~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~~ 536 (539)
T PLN02835 472 QVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGKAIG 536 (539)
T ss_pred EeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccccccCcc
Confidence 99999999999999999999999999999999999999999886655445789999999997666
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=5.2e-104 Score=821.24 Aligned_cols=464 Identities=76% Similarity=1.262 Sum_probs=378.0
Q ss_pred cccccccCCeeEeccCCCCCCCCCCCCCCccCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCCCC
Q 012024 2 SLTATSIRSAFANGNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRI 81 (472)
Q Consensus 2 ~~~n~l~~~tsiHwHG~~~~~~~~~DGv~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~ 81 (472)
-++|.|+++|+|||||++|.+++|||||++|||||+||++|+|+|++++|+||||||||.+.|+++||+|+|||++++.+
T Consensus 72 ~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~ 151 (543)
T PLN02991 72 NVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLI 151 (543)
T ss_pred EecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCccc
Confidence 47899999999999999999999999999999999999999999999778999999999999999999999999998766
Q ss_pred CCCCCCCCCccEEEEeccccCCHHHHHHHhhcCCCCCCCCeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeC
Q 012024 82 PVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDKGKKLPLPDGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQN 161 (472)
Q Consensus 82 ~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~ 161 (472)
+.|++.+++|++|+|+||++++...+...+..+...+++|++||||++..++++|++|++|||||||+|..+.+.|+|+|
T Consensus 152 ~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idg 231 (543)
T PLN02991 152 PVPFPAPADDYTVLIGDWYKTNHKDLRAQLDNGGKLPLPDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQN 231 (543)
T ss_pred CcccccccceeEEEecceecCCHHHHHHHhhcCCCCCCCCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECC
Confidence 66776778999999999999987666555556666778999999999866799999999999999999999999999999
Q ss_pred ceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeeeecCCCCceEEEEEEeCCCCCCCCCCCCCCCc
Q 012024 162 HKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTV 241 (472)
Q Consensus 162 h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~ 241 (472)
|+|+|||+||.+++|..++.|.|++||||||+|++++++|+||||+...+........|||+|+++..+.+.+.|..|.
T Consensus 232 H~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~- 310 (543)
T PLN02991 232 HTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPI- 310 (543)
T ss_pred CEEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCc-
Confidence 9999999999999999999999999999999999999889999999875554456789999999875322223343332
Q ss_pred cccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEecccccccCCeEeEEEcCeeccCCCCccccccccccCce
Q 012024 242 QIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGV 321 (472)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~ 321 (472)
...++.+........|.+....+.|..++.......++.+.+.......++...|+|||.+|..|++|+|++.++++++.
T Consensus 311 ~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~ 390 (543)
T PLN02991 311 QLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGV 390 (543)
T ss_pred cccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCc
Confidence 12222222222233444433334444332222223444444432222224567899999999999999998877777787
Q ss_pred eecCCCCCCCCCCCcccceeEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceE
Q 012024 322 FRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTV 401 (472)
Q Consensus 322 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv 401 (472)
|+.+.....|........+.++.++.|++|||+|+|.+...||||||||+||||++|.|.|++.....+|+.||++||||
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv 470 (543)
T PLN02991 391 YNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWEDIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTV 470 (543)
T ss_pred cccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEE
Confidence 76542222333223334567889999999999999998889999999999999999999998776667999999999999
Q ss_pred EeCCCCEEEEEEEecCceeeEeeecchhHHhcccEEEEEEecCCccccccCCCCccchhhccccC
Q 012024 402 QVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLRDEYPIPKNARLCGKAAG 466 (472)
Q Consensus 402 ~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~ 466 (472)
.||++||++|||++||||+|+|||||..|+..||+++++|.++.+..++..++|+++++||.-++
T Consensus 471 ~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~~ 535 (543)
T PLN02991 471 QVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRATG 535 (543)
T ss_pred EECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCccccCCC
Confidence 99999999999999999999999999999999999999998887776656789999999986554
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=9.1e-103 Score=816.89 Aligned_cols=468 Identities=56% Similarity=0.982 Sum_probs=375.0
Q ss_pred cccccccCCeeEeccCCCCCCCCCCCCCCccCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCCCC
Q 012024 2 SLTATSIRSAFANGNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRI 81 (472)
Q Consensus 2 ~~~n~l~~~tsiHwHG~~~~~~~~~DGv~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~ 81 (472)
-|+|+|+++|+|||||++|.+++|||||++|||||+||++|+|+|++.+|+||||||||.+.|+++||+|+|||++++..
T Consensus 71 ~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~ 150 (552)
T PLN02354 71 NVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLI 150 (552)
T ss_pred EEEECCCCCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCC
Confidence 47899999999999999999999999999999999999999999998678999999999999999999999999998766
Q ss_pred CCCCCCCCCccEEEEeccccCCHHHHHHHhhcCCCCCCCCeEEECCCC------CCceEEEeCCcEEEEEEEEccCCCcE
Q 012024 82 PVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDKGKKLPLPDGILINGRG------SGAAFNVEQGKTYRLRISNVGLQNSL 155 (472)
Q Consensus 82 ~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~------~~~~~~v~~g~~~rlR~in~~~~~~~ 155 (472)
+.+|+.+++|++|+|+||++++...+...+..+...+.+|++||||++ ..++++|++||+|||||||+|....+
T Consensus 151 ~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~ 230 (552)
T PLN02354 151 PVPYADPEDDYTVLIGDWYTKSHTALKKFLDSGRTLGRPDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSL 230 (552)
T ss_pred CCCCCCcCceEEEEeeeeccCCHHHHHHHHhcCCCCCCCCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceE
Confidence 677777789999999999999877776666666656778999999995 24789999999999999999999999
Q ss_pred eEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeeeecCCCCceEEEEEEeCCCCCCCCCC
Q 012024 156 NFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPI 235 (472)
Q Consensus 156 ~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~ 235 (472)
.|+|+||+|+|||+||++++|..++.|.|++||||||+|++++++|+|||++...+........|+|+|.++..+.+...
T Consensus 231 ~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~ 310 (552)
T PLN02354 231 NFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPEL 310 (552)
T ss_pred EEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999988899999988654444467899999987653222223
Q ss_pred CCCCCccccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEecccccccCCeEeEEEcCeeccCCCCccccccc
Q 012024 236 PGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADY 315 (472)
Q Consensus 236 p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~ 315 (472)
|..|. ...+....+..+..++.+....+.|.....+.....++++.+.......++...|+|||++|..|++|+|.+.+
T Consensus 311 p~~~~-~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~ 389 (552)
T PLN02354 311 PEAPV-GWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEY 389 (552)
T ss_pred CCCCc-ccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhh
Confidence 32221 11112222233333333332233332222222223455554443221234567899999999999999987765
Q ss_pred ccc-CceeecCC-CCCCCC-CCCcccceeEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCc
Q 012024 316 FKI-GGVFRIGS-ISDNPT-GGGIYQDTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNL 392 (472)
Q Consensus 316 ~~~-~~~~~~~~-~~~~p~-~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~ 392 (472)
.++ .+.++.+. ....|. ......++.++.++.|++|||+|+|.+...||||||||+||||++|.|.|+++....+|+
T Consensus 390 ~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl 469 (552)
T PLN02354 390 FGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNL 469 (552)
T ss_pred hcccCCccccCccccCCccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCCCCCccccccCCc
Confidence 443 34444221 111111 112345678889999999999999998889999999999999999999998766667899
Q ss_pred CCCCccceEEeCCCCEEEEEEEecCceeeEeeecchhHHhcccEEEEEEecCCccccccCCCCccchhhccccCCCCC
Q 012024 393 RDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLRDEYPIPKNARLCGKAAGRHTR 470 (472)
Q Consensus 393 ~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~~~ 470 (472)
.||++|||+.||++||++|||++||||+|+|||||..|+++||++++.|.++.+.+++..++|++.+.|+..++..++
T Consensus 470 ~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~~~~~ 547 (552)
T PLN02354 470 LDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKGLPKP 547 (552)
T ss_pred CCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCccccccccccCCCCC
Confidence 999999999999999999999999999999999999999999999999999887776556799999999988876654
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=2e-102 Score=810.65 Aligned_cols=465 Identities=63% Similarity=1.111 Sum_probs=376.3
Q ss_pred cccccccCCeeEeccCCCCCCCCCCCCCCccCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCCCC
Q 012024 2 SLTATSIRSAFANGNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRI 81 (472)
Q Consensus 2 ~~~n~l~~~tsiHwHG~~~~~~~~~DGv~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~ 81 (472)
-++|+|+++|+|||||++|++++|||||+++||||+||++|+|+|++++|+||||||||.+.|+++||+|+|||+++++.
T Consensus 60 ~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~ 139 (536)
T PLN02792 60 NVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRI 139 (536)
T ss_pred EEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCccc
Confidence 47899999999999999999999999998899999999999999999778999999999999999999999999986655
Q ss_pred CCCCCCCCCccEEEEeccccCCHHHHHHHhhcCCCCC-CCCeEEECCCCC--CceEEEeCCcEEEEEEEEccCCCcEeEE
Q 012024 82 PVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDKGKKLP-LPDGILINGRGS--GAAFNVEQGKTYRLRISNVGLQNSLNFR 158 (472)
Q Consensus 82 ~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~-~~d~~liNG~~~--~~~~~v~~g~~~rlR~in~~~~~~~~~~ 158 (472)
+.+|+.+++|++|+|+||++++...+.+.+..+...+ ++|++||||++. .++++|++||+|||||||+|..+.+.|+
T Consensus 140 ~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~~g~~~~~~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~ 219 (536)
T PLN02792 140 PVPFPEPAGDFTFLIGDWYRRNHTTLKKILDGGRKLPLMPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFE 219 (536)
T ss_pred CcCCCcccceeEEEecccccCCHHHHHHHhhccCcCCCCCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEE
Confidence 6677677899999999999998776665555554433 889999999963 4689999999999999999999999999
Q ss_pred EeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeeeecCCCCceEEEEEEeCCCCCCCCCCCCC
Q 012024 159 IQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGG 238 (472)
Q Consensus 159 i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~ 238 (472)
|+||+|+|||+||++++|..+++|.|++||||||+|++++++|+|||++...+......+.|||+|.++..... ..|..
T Consensus 220 i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~-~~p~~ 298 (536)
T PLN02792 220 ILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKI-IHARQ 298 (536)
T ss_pred ECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCC-CCCCC
Confidence 99999999999999999999999999999999999999988899999998755434467899999987643211 11222
Q ss_pred CC-ccccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEecccccccCCeEeEEEcCeeccCCCCccccccccc
Q 012024 239 PT-VQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFK 317 (472)
Q Consensus 239 p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~ 317 (472)
|. .+..++......++..+.+..+.+.|+++..+....+++++.+.......++...|+|||.+|..|++|+|.+.+++
T Consensus 299 p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~ 378 (536)
T PLN02792 299 PDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFK 378 (536)
T ss_pred CCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhc
Confidence 21 22223222222333344433334455544333333445555444322223456789999999999999999887776
Q ss_pred cCceeecCCCCCCCCC-CCcccceeEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCC
Q 012024 318 IGGVFRIGSISDNPTG-GGIYQDTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAV 396 (472)
Q Consensus 318 ~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~ 396 (472)
+.+.++.+.....|.. ......+.++.++.|++|||+|+|.....||||||||+||||++|.|.|++.....+|+.||+
T Consensus 379 ~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~ 458 (536)
T PLN02792 379 IKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAI 458 (536)
T ss_pred cCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCC
Confidence 6677654322222222 223346788999999999999999888899999999999999999999988766789999999
Q ss_pred ccceEEeCCCCEEEEEEEecCceeeEeeecchhHHhcccEEEEEEecCCccccccCCCCccchhhccccCC
Q 012024 397 ARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLRDEYPIPKNARLCGKAAGR 467 (472)
Q Consensus 397 ~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~ 467 (472)
+||||.|+++||++|||++||||+|+||||+..|+..||+++|.|.++.+..+...++|+++++||..++.
T Consensus 459 ~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~~~ 529 (536)
T PLN02792 459 SRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRASNK 529 (536)
T ss_pred ccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCccccccCC
Confidence 99999999999999999999999999999999999999999999998877665567899999999977663
No 5
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=4.3e-102 Score=811.08 Aligned_cols=469 Identities=49% Similarity=0.846 Sum_probs=373.2
Q ss_pred cccccccCCeeEeccCCCCCCCCCCCCCCccCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCCCC
Q 012024 2 SLTATSIRSAFANGNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRI 81 (472)
Q Consensus 2 ~~~n~l~~~tsiHwHG~~~~~~~~~DGv~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~ 81 (472)
-++|.|+++|+|||||++|+.++|||||++|||||+||++|+|+|++++|+||||||||++.|+++||+|+|||++++..
T Consensus 73 ~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~ 152 (596)
T PLN00044 73 NVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVI 152 (596)
T ss_pred EEEeCCCCCccEEECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccc
Confidence 37899999999999999999999999998899999999999999999879999999999999999999999999998766
Q ss_pred CCCCCCCC-CccEEEEeccccCCHHHHHHHhhcCCCCCCCCeEEECCCCCC-------------ceEEEeCCcEEEEEEE
Q 012024 82 PVPFPDPA-GDYTVLIGDWYKSNHTDLRAHLDKGKKLPLPDGILINGRGSG-------------AAFNVEQGKTYRLRIS 147 (472)
Q Consensus 82 ~~~~~~~~-~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~-------------~~~~v~~g~~~rlR~i 147 (472)
+.||...+ +|++|+|+||++++..++...+..|.....+|+++|||++.. ++++|++|++||||||
T Consensus 153 ~~P~~~~~~~e~~i~l~DW~~~~~~~~~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiI 232 (596)
T PLN00044 153 PIPFGFPDGGDITLFIADWYARDHRALRRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVH 232 (596)
T ss_pred cccccCCcccceEEEecccccCCHHHHHHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEE
Confidence 66665444 799999999999987776666666655667899999998631 3799999999999999
Q ss_pred EccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCC-ceEEEEeeeec----CCCCceEEEE
Q 012024 148 NVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPAR-DYYIVVSSRFT----STVLTTTGIL 222 (472)
Q Consensus 148 n~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g-~y~i~~~~~~~----~~~~~~~ail 222 (472)
|++..+.+.|+||||+|+|||+||.+++|.+++.|.|++||||||+|+++|.++ +|||++...+. .+...+.|||
T Consensus 233 Naa~~~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl 312 (596)
T PLN00044 233 NVGVATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAIL 312 (596)
T ss_pred EccCCceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEE
Confidence 999999999999999999999999999999999999999999999999998755 89999865322 2446788999
Q ss_pred EEeCCCCCCCCCCCCCCC--ccccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEecccc-cccCCeEeEEEc
Q 012024 223 HYSNSAGPVSGPIPGGPT--VQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSA-GQVNGKQRYAIN 299 (472)
Q Consensus 223 ~y~~~~~~~~~~~p~~p~--~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~iN 299 (472)
+|.++....+.++|..|. .+..++.+....+...+.+....+.|+++..+......+.+.+.... ...+|+..|+||
T Consensus 313 ~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~N 392 (596)
T PLN00044 313 HYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLN 392 (596)
T ss_pred EECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEEC
Confidence 998765322222343331 22222222223333333332233444433222222222222222110 011256789999
Q ss_pred CeeccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeec
Q 012024 300 SVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDG 379 (472)
Q Consensus 300 g~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~ 379 (472)
|.+|..|++|+|++.+++..++|+.+.+...|. ......+.++.++.|++|||+|+|.....||||||||+||||++|.
T Consensus 393 nvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~-~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~ 471 (596)
T PLN00044 393 EISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMN-RLPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDY 471 (596)
T ss_pred cccCCCCCCcchhhhhccCCCcccCCCCCCCCc-cccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecC
Confidence 999999999999888877778776554332232 2233467888999999999999998777899999999999999999
Q ss_pred CCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceeeEeeecchhHHhcccEEEEEEecCCcc-ccccCCCCccc
Q 012024 380 GQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTS-LRDEYPIPKNA 458 (472)
Q Consensus 380 g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~-~~~~~~~p~~~ 458 (472)
|.|++.....+|+.||++||||.|+++||++|||++||||+|+|||||+.|++.||+++|.|.++.+. .+...++|+++
T Consensus 472 G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~ 551 (596)
T PLN00044 472 GLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNA 551 (596)
T ss_pred CCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCccc
Confidence 99998776789999999999999999999999999999999999999999999999999999877654 44457899999
Q ss_pred hhhccccCCCCCC
Q 012024 459 RLCGKAAGRHTRP 471 (472)
Q Consensus 459 ~~c~~~~~~~~~~ 471 (472)
++||..++..+++
T Consensus 552 ~~Cg~~~~~~~~~ 564 (596)
T PLN00044 552 IFCGALSSLQKEQ 564 (596)
T ss_pred CcccccccCCCCC
Confidence 9999888776654
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.6e-101 Score=804.11 Aligned_cols=462 Identities=52% Similarity=0.865 Sum_probs=360.2
Q ss_pred cccccccCCeeEeccCCCCCCCCCCCCCCccCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCCCC
Q 012024 2 SLTATSIRSAFANGNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRI 81 (472)
Q Consensus 2 ~~~n~l~~~tsiHwHG~~~~~~~~~DGv~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~ 81 (472)
.++|.|+++|+|||||++|.+++|||||++|||||+||++|+|+|++++|+||||||||.+.|+++||+|+|||++++..
T Consensus 70 ~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~ 149 (545)
T PLN02168 70 NIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELV 149 (545)
T ss_pred EEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCccc
Confidence 47899999999999999999999999999999999999999999999768999999999999999999999999998766
Q ss_pred CCCCCCCCCccEEEEeccccCCHHHHHHHhhcCCCCCCCCeEEECCCC-CCceEEEeCCcEEEEEEEEccCCCcEeEEEe
Q 012024 82 PVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDKGKKLPLPDGILINGRG-SGAAFNVEQGKTYRLRISNVGLQNSLNFRIQ 160 (472)
Q Consensus 82 ~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~-~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~ 160 (472)
+.++++++.|++|+|+||++.+...+...+..+...+++|++||||++ ..++++|++|++|||||||+|..+.+.|+|+
T Consensus 150 ~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~Id 229 (545)
T PLN02168 150 PVPFPKPDEEYDILIGDWFYADHTVMRASLDNGHSLPNPDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQ 229 (545)
T ss_pred CcCcCcccceeeEEEEecCCCCHHHHHhhhhcCCCCCCCCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEEC
Confidence 667767789999999999998765554444445445688999999996 2468999999999999999999999999999
Q ss_pred CceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCC----CceEEEEeeeecCCCCceEEEEEEeCCCCCCCCCCC
Q 012024 161 NHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPA----RDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIP 236 (472)
Q Consensus 161 ~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~----g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p 236 (472)
||+|+|||+||.+++|..+++|.|++||||||+|++++.+ ++|||++....+.....+.|+|+|+++......++|
T Consensus 230 gH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p 309 (545)
T PLN02168 230 DHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLP 309 (545)
T ss_pred CcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCC
Confidence 9999999999999999999999999999999999998643 489999987655555678999999876432222333
Q ss_pred CCCC-ccccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEecccccccCCeEeEEEcCeeccCCCCccccccc
Q 012024 237 GGPT-VQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADY 315 (472)
Q Consensus 237 ~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~ 315 (472)
..|. .+...+......+...+.+..+.+.|..++.+.....++++.+..+....++...|+|||.+|..|++|+|.+.+
T Consensus 310 ~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~ 389 (545)
T PLN02168 310 LAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDH 389 (545)
T ss_pred CCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhh
Confidence 3232 111111111111222333322333343322222233455554443211234567899999999999999987665
Q ss_pred cccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCC
Q 012024 316 FKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDA 395 (472)
Q Consensus 316 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p 395 (472)
+++.+.+..+.....|.+......+.++.++.|++|||+|+|.....||||||||+||||++|.|.|++.....+|+.||
T Consensus 390 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP 469 (545)
T PLN02168 390 FQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDA 469 (545)
T ss_pred cccccccccCCCccCCCcCccccCceEEEecCCCEEEEEEeCCCCCCCCeeeCCCceEEEECCCCCCCccccccCCCCCC
Confidence 54433333221111222212223477889999999999999998789999999999999999999998766667999999
Q ss_pred CccceEEeCCCCEEEEEEEecCceeeEeeecchhHHhcccEEEEEEe-----cCCcc-ccccCCCCccchhhcc
Q 012024 396 VARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVY-----TASTS-LRDEYPIPKNARLCGK 463 (472)
Q Consensus 396 ~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~-----~~~~~-~~~~~~~p~~~~~c~~ 463 (472)
++|||+.||++||++|||++||||+|+|||||..|++.||+++++|. .|.+. .+...++|+++++||.
T Consensus 470 ~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg~ 543 (545)
T PLN02168 470 VSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCGK 543 (545)
T ss_pred CccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhccccc
Confidence 99999999999999999999999999999999999999999999884 22221 1224579999999984
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-95 Score=751.39 Aligned_cols=466 Identities=47% Similarity=0.785 Sum_probs=401.9
Q ss_pred cccccccCCeeEeccCCCCCCCCCCCCCCccCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCCCC
Q 012024 2 SLTATSIRSAFANGNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRI 81 (472)
Q Consensus 2 ~~~n~l~~~tsiHwHG~~~~~~~~~DGv~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~ 81 (472)
-+.|.++++++|||||++|..++||||+.+|||||+||++|+|+|++++|.||||||+|++.|+++|++|+|||+++...
T Consensus 72 ~v~N~~~~~~sihWhGv~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~ 151 (563)
T KOG1263|consen 72 NVVNRLDEPFSIHWHGVRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGL 151 (563)
T ss_pred EEEeCCCCceEEEeccccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccC
Confidence 37899999999999999999999999944499999999999999999889999999999999999999999999999887
Q ss_pred CCCCCCCCCccEEEEeccccC-CHHHHHHHhhcCCCCCC-CCeEEECCCCC-----CceEEEeCCcEEEEEEEEccCCCc
Q 012024 82 PVPFPDPAGDYTVLIGDWYKS-NHTDLRAHLDKGKKLPL-PDGILINGRGS-----GAAFNVEQGKTYRLRISNVGLQNS 154 (472)
Q Consensus 82 ~~~~~~~~~e~~l~l~d~~~~-~~~~~~~~~~~~~~~~~-~d~~liNG~~~-----~~~~~v~~g~~~rlR~in~~~~~~ 154 (472)
+.|++.+++|++|+|+||+++ +...+...+..+...+. +|.++|||+.. .++++|++||+|||||+|+|....
T Consensus 152 p~pf~~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~ 231 (563)
T KOG1263|consen 152 PVPFPKPDKEFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTS 231 (563)
T ss_pred CCCCCCCCceeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccc
Confidence 888888999999999999996 77777766665554444 89999999962 158999999999999999999999
Q ss_pred EeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeeeecCC----CCceEEEEEEeCCCCC
Q 012024 155 LNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRFTST----VLTTTGILHYSNSAGP 230 (472)
Q Consensus 155 ~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~~~~----~~~~~ail~y~~~~~~ 230 (472)
+.|+|++|+|+||++||.+++|..+++|.|.|||||||+|++++.+++|+|++.+++... .....|+|+|.++..+
T Consensus 232 l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~ 311 (563)
T KOG1263|consen 232 LNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHP 311 (563)
T ss_pred eEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCccc
Confidence 999999999999999999999999999999999999999999998899999999887654 5788999999985443
Q ss_pred CCCCCC---C-CCCccccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEecccccccCCeEeEEEcCeeccCC
Q 012024 231 VSGPIP---G-GPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPA 306 (472)
Q Consensus 231 ~~~~~p---~-~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p 306 (472)
.+...| . .|..+..++....+.++..+....+.++|+++...+.....+.+.+..+....+++..++||+.+|..|
T Consensus 312 ~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P 391 (563)
T KOG1263|consen 312 ASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTP 391 (563)
T ss_pred CcccCcccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECC
Confidence 333222 1 222344566777777777777778888999888777777777777776554567889999999999999
Q ss_pred CCccccccccc-cCceeecCCCCCCCC---CCC-cccceeEEeecCCcEEEEEEEcCCC---CCCCeeecCCceEEEEee
Q 012024 307 DTPLKLADYFK-IGGVFRIGSISDNPT---GGG-IYQDTAVMGADYRAFIEIVFQNDED---IIQSYHLNGYQFWVVGMD 378 (472)
Q Consensus 307 ~~p~l~~~~~~-~~~~~~~~~~~~~p~---~~~-~~~~~~~~~~~~g~~ve~vi~N~~~---~~HP~HlHG~~F~Vl~~~ 378 (472)
++|.+++.++. +++.++.+ .++.|. +.. .+.++.++.++.++.||++++|.+. ..|||||||+.||||+.+
T Consensus 392 ~tp~~l~~~~~~~~~~~~~d-~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g 470 (563)
T KOG1263|consen 392 KTPSLLAAYFKNIPGYFTND-FPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYG 470 (563)
T ss_pred CCchhhhhhhccCCccccCc-cCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEec
Confidence 99988888765 45555533 333441 222 3789999999999999999999874 469999999999999999
Q ss_pred cCCCCC--CCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceeeEeeecchhHHhcccEEEEEEecCCccccccCCCCc
Q 012024 379 GGQWTS--ASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLRDEYPIPK 456 (472)
Q Consensus 379 ~g~~~~--~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~ 456 (472)
.|+|++ +.+..+|+.+|+.||||.|+|+||++|||.|||||+|+||||+.+|+..||+++|+|..++++++++.++|.
T Consensus 471 ~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~ 550 (563)
T KOG1263|consen 471 FGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPK 550 (563)
T ss_pred ccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCC
Confidence 999998 555789999999999999999999999999999999999999999999999999999999888877789999
Q ss_pred cchhhccccCCC
Q 012024 457 NARLCGKAAGRH 468 (472)
Q Consensus 457 ~~~~c~~~~~~~ 468 (472)
+.++||..++.+
T Consensus 551 ~~~~cg~~~~~~ 562 (563)
T KOG1263|consen 551 NLPKCGRASGIP 562 (563)
T ss_pred CcccccccCCcC
Confidence 999999988765
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.2e-93 Score=753.42 Aligned_cols=451 Identities=27% Similarity=0.471 Sum_probs=340.6
Q ss_pred cccccccCCeeEeccCCCCCCCCCCCCCCc-cCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCCC
Q 012024 2 SLTATSIRSAFANGNGIQNRRNSFEDGVYG-TTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPR 80 (472)
Q Consensus 2 ~~~n~l~~~tsiHwHG~~~~~~~~~DGv~~-tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~ 80 (472)
-|+|+|.++|+|||||++|.+++||||+++ |||||+||++|+|+|++.+++||||||||.+.|+ +||+|+|||+++.+
T Consensus 47 ~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~ 125 (539)
T TIGR03389 47 NVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPG 125 (539)
T ss_pred EEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCC
Confidence 479999999999999999999999999999 9999999999999999966899999999998765 59999999999876
Q ss_pred CCCCCCCCCCccEEEEeccccCCHHHHH-HHhhcCCCCCCCCeEEECCCCC---------CceEEEeCCcEEEEEEEEcc
Q 012024 81 IPVPFPDPAGDYTVLIGDWYKSNHTDLR-AHLDKGKKLPLPDGILINGRGS---------GAAFNVEQGKTYRLRISNVG 150 (472)
Q Consensus 81 ~~~~~~~~~~e~~l~l~d~~~~~~~~~~-~~~~~~~~~~~~d~~liNG~~~---------~~~~~v~~g~~~rlR~in~~ 150 (472)
.+.+++.+++|++|+|+||++++...+. .....+..+.++|++||||+.. .++++|++||+|||||||+|
T Consensus 126 ~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~ 205 (539)
T TIGR03389 126 VPYPFPKPDREVPIILGEWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAA 205 (539)
T ss_pred CCCCCCCCCceEEEEecccccCCHHHHHHHHHhcCCCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEecc
Confidence 5666667789999999999998766543 3344455556889999999952 24799999999999999999
Q ss_pred CCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeeeecC----CCCceEEEEEEeC
Q 012024 151 LQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRFTS----TVLTTTGILHYSN 226 (472)
Q Consensus 151 ~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~~~----~~~~~~ail~y~~ 226 (472)
..+.+.|+||+|+|+|||+||.+++|.++++|.|++||||||+|++++.+|+||||+....+. ......|+|+|.+
T Consensus 206 ~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~ 285 (539)
T TIGR03389 206 LNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKG 285 (539)
T ss_pred CCceEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECC
Confidence 999999999999999999999999999999999999999999999998889999999764321 2346899999987
Q ss_pred CCCCCCCCCCCCCC-ccccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEeccccc----------c-cCCeE
Q 012024 227 SAGPVSGPIPGGPT-VQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAG----------Q-VNGKQ 294 (472)
Q Consensus 227 ~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----------~-~~g~~ 294 (472)
.........+..|. ........ ....+........|.. .+ ...++++.+..... . .....
T Consensus 286 ~~~~~~p~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~-~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (539)
T TIGR03389 286 TSNSAKPILPTLPAYNDTAAATN----FSNKLRSLNSAQYPAN-VP---VTIDRRLFFTIGLGLDPCPNNTCQGPNGTRF 357 (539)
T ss_pred CCCCCCCCCCCCCCCCchhhhhH----HHhhcccccccCCCCC-CC---CCCCeEEEEEeecccccCcccccccCCCcEE
Confidence 64321111111111 11000000 0001111110000100 00 01233322211100 0 12346
Q ss_pred eEEEcCeeccCCCCccccccccccCceeecCCCCCCC-----------CCCCcccceeEEeecCCcEEEEEEEcCC---C
Q 012024 295 RYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNP-----------TGGGIYQDTAVMGADYRAFIEIVFQNDE---D 360 (472)
Q Consensus 295 ~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p-----------~~~~~~~~~~~~~~~~g~~ve~vi~N~~---~ 360 (472)
.|+|||++|..|..|+|.+.+.++.+.+..+.....| .+...+.+++++.++.|++|||+|+|.+ .
T Consensus 358 ~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~ 437 (539)
T TIGR03389 358 AASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGS 437 (539)
T ss_pred EEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCC
Confidence 8999999999899998866554444433221110001 0111233678899999999999999985 3
Q ss_pred CCCCeeecCCceEEEEeecCCCCCCC-CCCCCcCCCCccceEEeCCCCEEEEEEEecCceeeEeeecchhHHhcccEEEE
Q 012024 361 IIQSYHLNGYQFWVVGMDGGQWTSAS-RNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYL 439 (472)
Q Consensus 361 ~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~ 439 (472)
..||||||||+||||+++.|.|+... ...+|+.||++||||.||++||++|||++||||.|+|||||++|+..||+++|
T Consensus 438 ~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~ 517 (539)
T TIGR03389 438 ENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAF 517 (539)
T ss_pred CCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEE
Confidence 48999999999999999999887542 23689999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccccccCCCCccchhh
Q 012024 440 RVYTASTSLRDEYPIPKNARLC 461 (472)
Q Consensus 440 ~V~~~~~~~~~~~~~p~~~~~c 461 (472)
.+........+.+++|+++++|
T Consensus 518 ~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 518 LVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred EEccCCCCccccCCCCccCCCC
Confidence 8865544433457899999999
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.7e-91 Score=737.03 Aligned_cols=447 Identities=27% Similarity=0.484 Sum_probs=332.3
Q ss_pred ccccccc-CCeeEeccCCCCCCCCCCCCCCc-cCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCC
Q 012024 2 SLTATSI-RSAFANGNGIQNRRNSFEDGVYG-TTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRP 79 (472)
Q Consensus 2 ~~~n~l~-~~tsiHwHG~~~~~~~~~DGv~~-tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 79 (472)
-|+|.|. ++|+|||||++|.+++||||+++ |||||+||++|+|+|++ +++||||||||.+.|+++||+|+|||+++.
T Consensus 67 ~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~ 145 (574)
T PLN02191 67 HLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAK 145 (574)
T ss_pred EEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCC
Confidence 4789998 78999999999999999999999 99999999999999999 589999999999999999999999998754
Q ss_pred CCCCCCCCCCCccEEEEeccccCCHHHHHHHhhc--CCCCCCCCeEEECCCCC---------------------------
Q 012024 80 RIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDK--GKKLPLPDGILINGRGS--------------------------- 130 (472)
Q Consensus 80 ~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~--~~~~~~~d~~liNG~~~--------------------------- 130 (472)
....++ .+|+|++|+|+||+|.........+.. .....+++++||||++.
T Consensus 146 ~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 224 (574)
T PLN02191 146 GPKERL-RYDGEFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCA 224 (574)
T ss_pred CCCCCC-CCCeeEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCC
Confidence 322233 468999999999999864432211211 11235678899998752
Q ss_pred CceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCC-CceEEEEee
Q 012024 131 GAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPA-RDYYIVVSS 209 (472)
Q Consensus 131 ~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~-g~y~i~~~~ 209 (472)
+++++|++||+|||||||+|+.+.+.|+||+|+|+|||+||.+++|.++++|.|++||||||+|++++++ ++||||+..
T Consensus 225 p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~ 304 (574)
T PLN02191 225 PQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGV 304 (574)
T ss_pred ceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEc
Confidence 1269999999999999999999999999999999999999999999999999999999999999999865 589999965
Q ss_pred eecC-CCCceEEEEEEeCCCCCC--CCCCCCCCC-ccccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEecc
Q 012024 210 RFTS-TVLTTTGILHYSNSAGPV--SGPIPGGPT-VQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSS 285 (472)
Q Consensus 210 ~~~~-~~~~~~ail~y~~~~~~~--~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 285 (472)
.... ......|||+|.+..... +.+.|..|. .+... .......+......+.+.. ...++.+.+..
T Consensus 305 ~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~ 374 (574)
T PLN02191 305 RGRKPNTTQALTILNYVTAPASKLPSSPPPVTPRWDDFER----SKNFSKKIFSAMGSPSPPK------KYRKRLILLNT 374 (574)
T ss_pred cccCCCCCCceEEEEECCCCCCCCCCCCCCCCCcccccch----hhcccccccccccCCCCCC------cccceEEEecc
Confidence 4321 123457999998754321 111111111 11100 0011111110000011110 01234443332
Q ss_pred cccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCC---------CCCC-CCcccceeEEeecCCcEEEEEE
Q 012024 286 SAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISD---------NPTG-GGIYQDTAVMGADYRAFIEIVF 355 (472)
Q Consensus 286 ~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~---------~p~~-~~~~~~~~~~~~~~g~~ve~vi 355 (472)
. ....+...|+|||.+|..|..|+|.+.+.+..+.|+.+.... .+.. ...+.++.++.++.|++|||+|
T Consensus 375 ~-~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi 453 (574)
T PLN02191 375 Q-NLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVII 453 (574)
T ss_pred c-ceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEE
Confidence 1 112345689999999998999988776554444433221100 0000 0123467789999999999999
Q ss_pred EcCC------CCCCCeeecCCceEEEEeecCCCCCCC-CCCCCcCCCCccceEEeCCCCEEEEEEEecCceeeEeeecch
Q 012024 356 QNDE------DIIQSYHLNGYQFWVVGMDGGQWTSAS-RNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESW 428 (472)
Q Consensus 356 ~N~~------~~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil 428 (472)
+|.. ...||||||||+||||++|.|.|+++. ...+|+.||++|||+.|+++||++|||++||||.|+|||||+
T Consensus 454 ~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~ 533 (574)
T PLN02191 454 QNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIE 533 (574)
T ss_pred ECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCch
Confidence 9985 568999999999999999999998632 246899999999999999999999999999999999999999
Q ss_pred hHHhcccEEEEEEecCCccccccCCCCccchhhccccC
Q 012024 429 ARQYLGQQFYLRVYTASTSLRDEYPIPKNARLCGKAAG 466 (472)
Q Consensus 429 ~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~ 466 (472)
+|+..||+++|. +..+.+ +++|++++.|+.+.+
T Consensus 534 ~Hl~~Gm~~~~~--e~~~~~---~~~p~~~~~C~~~~~ 566 (574)
T PLN02191 534 PHLHMGMGVVFA--EGLNRI---GKIPDEALGCGLTKQ 566 (574)
T ss_pred hhhhcCCEEEEe--cChhhc---cCCCcchhhhhcccc
Confidence 999999999994 333334 458899999986654
No 10
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=3.5e-91 Score=734.18 Aligned_cols=443 Identities=27% Similarity=0.511 Sum_probs=335.2
Q ss_pred ccccccc-CCeeEeccCCCCCCCCCCCCCCc-cCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCC
Q 012024 2 SLTATSI-RSAFANGNGIQNRRNSFEDGVYG-TTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRP 79 (472)
Q Consensus 2 ~~~n~l~-~~tsiHwHG~~~~~~~~~DGv~~-tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 79 (472)
.|+|.|. ++|+|||||++|.+++||||+++ +||+|+||++|+|+|++ +++||||||||.+.|+++||+|+|||+++.
T Consensus 45 ~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 45 ELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPD 123 (541)
T ss_pred EEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCC
Confidence 4789986 89999999999999999999999 99999999999999999 589999999999999999999999999986
Q ss_pred CCCCCCCCCCCccEEEEeccccCCHHHHHHHhhc--CCCCCCCCeEEECCCCC--------------------------C
Q 012024 80 RIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDK--GKKLPLPDGILINGRGS--------------------------G 131 (472)
Q Consensus 80 ~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~--~~~~~~~d~~liNG~~~--------------------------~ 131 (472)
.++.++ .+|+|++|+|+||+++...+....+.. .....+++++||||++. +
T Consensus 124 ~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (541)
T TIGR03388 124 GEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAP 202 (541)
T ss_pred CCCCCc-cccceEEEEeecccCCCHHHHHhhcccCCCcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCc
Confidence 544555 468999999999999976543322221 11225679999999852 1
Q ss_pred ceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCC-CceEEEEeee
Q 012024 132 AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPA-RDYYIVVSSR 210 (472)
Q Consensus 132 ~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~-g~y~i~~~~~ 210 (472)
..++|++|++|||||||+|..+.+.|+||+|+|+|||+||++++|.+++.|.|++||||||+|++++.+ ++||||+...
T Consensus 203 ~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 203 QILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred eEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 358999999999999999999999999999999999999999999999999999999999999998765 5899998764
Q ss_pred ec-CCCCceEEEEEEeCCCCCCC--CCCCCCCC-ccccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEeccc
Q 012024 211 FT-STVLTTTGILHYSNSAGPVS--GPIPGGPT-VQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSS 286 (472)
Q Consensus 211 ~~-~~~~~~~ail~y~~~~~~~~--~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 286 (472)
.. .....+.|||+|.+...... .+.+..|. .+.... ......+......+.|. ...++++.+...
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 351 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRS----KAFSLAIKAAMGSPKPP-------ETSDRRIVLLNT 351 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchh----hccchhhhccccCCCCC-------CCCCcEEEEecc
Confidence 33 22346789999987542211 11111121 010000 00000000000011111 123444433222
Q ss_pred ccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCC----------CCCCCCCcccceeEEeecCCcEEEEEEE
Q 012024 287 AGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSIS----------DNPTGGGIYQDTAVMGADYRAFIEIVFQ 356 (472)
Q Consensus 287 ~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~----------~~p~~~~~~~~~~~~~~~~g~~ve~vi~ 356 (472)
....++...|++||.+|..|..|+|.+.+++..++++.+... ..+.....+.|+.++.++.|++||++|+
T Consensus 352 ~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~ 431 (541)
T TIGR03388 352 QNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQ 431 (541)
T ss_pred CcccCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEE
Confidence 222345567999999998889998877655443333321110 0011223455788899999999999999
Q ss_pred cCC------CCCCCeeecCCceEEEEeecCCCCCC-CCCCCCcCCCCccceEEeCCCCEEEEEEEecCceeeEeeecchh
Q 012024 357 NDE------DIIQSYHLNGYQFWVVGMDGGQWTSA-SRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWA 429 (472)
Q Consensus 357 N~~------~~~HP~HlHG~~F~Vl~~~~g~~~~~-~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~ 429 (472)
|.+ ...||||||||+||||++|.|.|+.. ....+|+.||++|||+.|+++||++|||++||||.|+|||||++
T Consensus 432 n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~ 511 (541)
T TIGR03388 432 NANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEP 511 (541)
T ss_pred CCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchh
Confidence 974 35799999999999999999988754 22468999999999999999999999999999999999999999
Q ss_pred HHhcccEEEEEEecCCccccccCCCCccchhhc
Q 012024 430 RQYLGQQFYLRVYTASTSLRDEYPIPKNARLCG 462 (472)
Q Consensus 430 H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~ 462 (472)
|+..||+++|... + +.+ +++|+++++||
T Consensus 512 H~~~GM~~~~~e~-~-~~~---~~~P~~~~~C~ 539 (541)
T TIGR03388 512 HLHMGMGVVFAEG-V-EKV---GKLPKEALGCG 539 (541)
T ss_pred hhhcccEEEEecc-c-ccc---CCCCccccCCC
Confidence 9999999999654 2 333 56899999998
No 11
>PLN02604 oxidoreductase
Probab=100.00 E-value=3.4e-90 Score=728.76 Aligned_cols=447 Identities=28% Similarity=0.492 Sum_probs=338.9
Q ss_pred cccccc-cCCeeEeccCCCCCCCCCCCCCCc-cCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCC
Q 012024 2 SLTATS-IRSAFANGNGIQNRRNSFEDGVYG-TTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRP 79 (472)
Q Consensus 2 ~~~n~l-~~~tsiHwHG~~~~~~~~~DGv~~-tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 79 (472)
.|+|.| .++|+|||||++|.+++||||+++ +||+|+||++|+|+|++ +++||||||||...|+.+||+|+|||+++.
T Consensus 68 ~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 68 ELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred EEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecC
Confidence 478998 589999999999999999999999 99999999999999999 689999999999999999999999999976
Q ss_pred CCCCCCCCCCCccEEEEeccccCCHHHHHHHhhc--CCCCCCCCeEEECCCCC------------------------Cce
Q 012024 80 RIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDK--GKKLPLPDGILINGRGS------------------------GAA 133 (472)
Q Consensus 80 ~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~--~~~~~~~d~~liNG~~~------------------------~~~ 133 (472)
+.+.++ .++.|.+|+|+||+|++..++...+.. .....++++++|||++. +++
T Consensus 147 ~~~~p~-~~d~d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (566)
T PLN02604 147 GKSEPF-SYDYDRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYV 225 (566)
T ss_pred CCCCcc-ccCcceEEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceE
Confidence 555556 468899999999999976554332221 11235679999999751 236
Q ss_pred EEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCC-ceEEEEeeeec
Q 012024 134 FNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPAR-DYYIVVSSRFT 212 (472)
Q Consensus 134 ~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g-~y~i~~~~~~~ 212 (472)
++|++|++|||||||+|..+.++|+||+|+|+|||+||.+++|.+++.|.|++||||||+|++++++| +||||+.....
T Consensus 226 ~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~ 305 (566)
T PLN02604 226 LTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSR 305 (566)
T ss_pred EEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccC
Confidence 89999999999999999999999999999999999999999999999999999999999999998654 89999764332
Q ss_pred -CCCCceEEEEEEeCCCCCCCC--CCCCCCC-ccccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEeccccc
Q 012024 213 -STVLTTTGILHYSNSAGPVSG--PIPGGPT-VQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAG 288 (472)
Q Consensus 213 -~~~~~~~ail~y~~~~~~~~~--~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 288 (472)
.+...+.|||+|.+....... ..+..+. .+....+.....++. +... .. .+ ....++++.+.....
T Consensus 306 ~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~-------~~~~d~~~~~~~~~~ 375 (566)
T PLN02604 306 NNTTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKA-RHGY-IH-PP-------PLTSDRVIVLLNTQN 375 (566)
T ss_pred CCCCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccc-cccC-cC-CC-------CCCCCeEEEEecccc
Confidence 244678999999864321110 0111111 000000100000000 0000 00 01 012355555433222
Q ss_pred ccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCC-C----------CCCCCcccceeEEeecCCcEEEEEEEc
Q 012024 289 QVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISD-N----------PTGGGIYQDTAVMGADYRAFIEIVFQN 357 (472)
Q Consensus 289 ~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~-~----------p~~~~~~~~~~~~~~~~g~~ve~vi~N 357 (472)
..++...|+|||.+|..|..|+|.+.+.+.++.|+.+.... . +.....+.+..++.++.|++||++|+|
T Consensus 376 ~~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n 455 (566)
T PLN02604 376 EVNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQN 455 (566)
T ss_pred ccCCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEEC
Confidence 33456789999999998889988766554556664221110 0 001123446778999999999999999
Q ss_pred CC------CCCCCeeecCCceEEEEeecCCCCCCC-CCCCCcCCCCccceEEeCCCCEEEEEEEecCceeeEeeecchhH
Q 012024 358 DE------DIIQSYHLNGYQFWVVGMDGGQWTSAS-RNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWAR 430 (472)
Q Consensus 358 ~~------~~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H 430 (472)
.. ...||||||||+||||++|.|.|++.. ...+|+.||++|||+.|+++||++|||++||||.|+|||||++|
T Consensus 456 ~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~H 535 (566)
T PLN02604 456 ANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESH 535 (566)
T ss_pred CccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhH
Confidence 85 357999999999999999999887543 34689999999999999999999999999999999999999999
Q ss_pred HhcccEEEEEEecCCccccccCCCCccchhhcccc
Q 012024 431 QYLGQQFYLRVYTASTSLRDEYPIPKNARLCGKAA 465 (472)
Q Consensus 431 ~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~ 465 (472)
+..||+++|... + +.+ .++|.++++|+.-+
T Consensus 536 l~~GM~~v~~e~-~-~~~---~~~p~~~~~C~~~~ 565 (566)
T PLN02604 536 FFMGMGVVFEEG-I-ERV---GKLPSSIMGCGESK 565 (566)
T ss_pred hhcCCEEEEeeC-h-hhc---cCCCCCcCccccCC
Confidence 999999999654 3 333 67899999998654
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=5.8e-89 Score=715.35 Aligned_cols=433 Identities=22% Similarity=0.382 Sum_probs=324.6
Q ss_pred ccccccc-CCeeEeccCCCCCCCCCCCCCCc-cCCCCCCCCeEEEEEEeC-CceeeeEEecccchhhhcCceeEEEEeCC
Q 012024 2 SLTATSI-RSAFANGNGIQNRRNSFEDGVYG-TTCPIPPGKNFTYILQVK-DQIGSFYYFPSLAFHKAAGGFGGIRILSR 78 (472)
Q Consensus 2 ~~~n~l~-~~tsiHwHG~~~~~~~~~DGv~~-tq~~i~pG~~~~Y~~~~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 78 (472)
.|+|.|+ ++|+|||||++|.+++||||+|+ |||||+||++|+|+|++. +++||||||||.+.|+. ||+|+|||+++
T Consensus 52 ~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~ 130 (538)
T TIGR03390 52 RVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDC 130 (538)
T ss_pred EEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccC
Confidence 4789997 89999999999999999999999 999999999999999985 58999999999999987 59999999987
Q ss_pred CCCCCCCCCCCCccEEEEeccccCCHHHHHHHhhcC--CCCCCCCeEEECCCCC---------------CceEEEeCCcE
Q 012024 79 PRIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDKG--KKLPLPDGILINGRGS---------------GAAFNVEQGKT 141 (472)
Q Consensus 79 ~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~--~~~~~~d~~liNG~~~---------------~~~~~v~~g~~ 141 (472)
... ++ .+|+|++|+|+||+++...++...+..+ ....+++++||||++. .++++|++||+
T Consensus 131 ~~~--~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~ 207 (538)
T TIGR03390 131 EPP--PY-KYDDERILLVSDFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKT 207 (538)
T ss_pred Ccc--CC-CccCcEEEEEeCCCCCCHHHHHhhhhccCCccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCE
Confidence 533 33 4588999999999999877654433322 1235678999999951 36799999999
Q ss_pred EEEEEEEccCCCcEeEEEeCce-eEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCC-------CCceEEEEeeeecC
Q 012024 142 YRLRISNVGLQNSLNFRIQNHK-MKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQP-------ARDYYIVVSSRFTS 213 (472)
Q Consensus 142 ~rlR~in~~~~~~~~~~i~~h~-~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~-------~g~y~i~~~~~~~~ 213 (472)
|||||||+|..+.+.|+|++|+ |+|||+||.+++|.+++.|.|++||||||+|++++. +++||||+.....+
T Consensus 208 yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~ 287 (538)
T TIGR03390 208 YRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP 287 (538)
T ss_pred EEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC
Confidence 9999999999999999999999 999999999999999999999999999999999874 48999999765444
Q ss_pred CCCceEEEEEEeCCCCCCCCCCCCCCCccccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEecccccc--cC
Q 012024 214 TVLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQ--VN 291 (472)
Q Consensus 214 ~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~ 291 (472)
+....+|||+|++.........|..|..........+. ...|.+......+. ++. ....++++.+...... .+
T Consensus 288 ~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~~l~pl~~~~~~~--~~~-~~~~d~~~~l~~~~~~~~~~ 362 (538)
T TIGR03390 288 KVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWL--EYELEPLSEENNQD--FPT-LDEVTRRVVIDAHQNVDPLN 362 (538)
T ss_pred CcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhh--heeeEecCccccCC--CCC-CCcCceEEEEEccccccccC
Confidence 45568999999865422111111111100000000010 11222211110000 000 0134566655554321 24
Q ss_pred CeEeEEEcCeeccC--CCCccccccccccCceeecCCCCC-CCCCCCcccceeEEeecCCcEEEEEEEcCC--------C
Q 012024 292 GKQRYAINSVSFIP--ADTPLKLADYFKIGGVFRIGSISD-NPTGGGIYQDTAVMGADYRAFIEIVFQNDE--------D 360 (472)
Q Consensus 292 g~~~~~iNg~~f~~--p~~p~l~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~ve~vi~N~~--------~ 360 (472)
+...|+|||++|.. +..|+|...+.+. +....... .+...+....+.++.++.|++|||+|+|.. .
T Consensus 363 g~~~~~~N~~s~~~~~~~~P~L~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~ 439 (538)
T TIGR03390 363 GRVAWLQNGLSWTESVRQTPYLVDIYENG---LPATPNYTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGV 439 (538)
T ss_pred CeEEEEECCcccCCCCCCCchHHHHhcCC---CCcCCCcccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCC
Confidence 66789999999985 7889887654321 00000000 000111223566788999999999999974 4
Q ss_pred CCCCeeecCCceEEEEeecCCCCCCC-CCCCCcCCCCccceEEeC----------CCCEEEEEEEecCceeeEeeecchh
Q 012024 361 IIQSYHLNGYQFWVVGMDGGQWTSAS-RNQYNLRDAVARVTVQVY----------PKSWSAIYIALDNVGMWNLRSESWA 429 (472)
Q Consensus 361 ~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~n~~~p~~rDTv~vp----------~~g~~~irf~adnpG~w~~HCHil~ 429 (472)
..||||||||+||||++|.|.|++.. ...+|+.||++|||+.|| +++|++|||++||||.|+|||||.+
T Consensus 440 ~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~ 519 (538)
T TIGR03390 440 DTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQ 519 (538)
T ss_pred CCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchh
Confidence 68999999999999999999998543 135788999999999996 7899999999999999999999999
Q ss_pred HHhcccEEEEEEecCCc
Q 012024 430 RQYLGQQFYLRVYTAST 446 (472)
Q Consensus 430 H~d~GMm~~~~V~~~~~ 446 (472)
|...||+++|.|.+.++
T Consensus 520 H~~~Gm~~~~~~~~~~~ 536 (538)
T TIGR03390 520 HMVMGMQTVWVFGDAED 536 (538)
T ss_pred hhhccceEEEEeCChHH
Confidence 99999999999876544
No 13
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=4e-73 Score=590.92 Aligned_cols=367 Identities=19% Similarity=0.225 Sum_probs=264.6
Q ss_pred cccccccCCeeEeccCCCCCCCCCCCCCCccCCCCCCCCeEEEEEEeCCceeeeEEeccc----chhhhcCceeEEEEeC
Q 012024 2 SLTATSIRSAFANGNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSL----AFHKAAGGFGGIRILS 77 (472)
Q Consensus 2 ~~~n~l~~~tsiHwHG~~~~~~~~~DGv~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~ 77 (472)
-++|+|+++|+|||||+++.+ .+||+| ||+|+||++|+|+|++.+++||||||||. +.|+++||+|+|||++
T Consensus 90 ~~~N~L~~~ttiHwHGl~~~~--~~DG~p--q~~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d 165 (523)
T PRK10965 90 DITNQLPEETTLHWHGLEVPG--EVDGGP--QGIIAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIED 165 (523)
T ss_pred EEEECCCCCccEEcccccCCC--ccCCCC--CCCCCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcC
Confidence 479999999999999999865 499996 89999999999999997679999999996 6999999999999999
Q ss_pred CCCCCCCCCC--CCCccEEEEeccccCCHHHHHHHhhc--CCCCCCCCeEEECCCCCCceEEEeCCcEEEEEEEEccCCC
Q 012024 78 RPRIPVPFPD--PAGDYTVLIGDWYKSNHTDLRAHLDK--GKKLPLPDGILINGRGSGAAFNVEQGKTYRLRISNVGLQN 153 (472)
Q Consensus 78 ~~~~~~~~~~--~~~e~~l~l~d~~~~~~~~~~~~~~~--~~~~~~~d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~ 153 (472)
+++.+.+++. ..+|++|+|+||+++.++++...... ......+|.++|||+. .|.+.++ +++|||||||+|+.+
T Consensus 166 ~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r 243 (523)
T PRK10965 166 DESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNAR 243 (523)
T ss_pred ccccccCCcccCCCceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCcc-cceeecC-CCEEEEEEEeccCCc
Confidence 8654433332 45699999999999876554221111 1123567999999996 5788875 579999999999999
Q ss_pred cEeEEE-eCceeEEEEeCCccc-cceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeeeecC-----CCCceEEEEEEeC
Q 012024 154 SLNFRI-QNHKMKLVEVEGTHT-LQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRFTS-----TVLTTTGILHYSN 226 (472)
Q Consensus 154 ~~~~~i-~~h~~~via~DG~~~-~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~~~-----~~~~~~ail~y~~ 226 (472)
.++|++ |+|+|+|||+||+++ +|..++.|.|+|||||||+|++++ .++|+|........ .......++++..
T Consensus 244 ~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~-~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~ 322 (523)
T PRK10965 244 SLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSD-GKAFDLVTLPVSQMGMALAPFDKPLPVLRIQP 322 (523)
T ss_pred eEEEEEcCCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCC-CceEEEEEecccCcccccccCCCceeEEEEec
Confidence 999998 899999999999987 899999999999999999999984 67899887543211 1112345566654
Q ss_pred CCCCCCCCCCCCCCccccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEecc---------------------
Q 012024 227 SAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSS--------------------- 285 (472)
Q Consensus 227 ~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~--------------------- 285 (472)
.......++|... .+..+.+.+.. ...|++.+..
T Consensus 323 ~~~~~~~~~P~~l------------------~~~~~~~~~~~-------~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~ 377 (523)
T PRK10965 323 LLISASGTLPDSL------------------ASLPALPSLEG-------LTVRRLQLSMDPRLDMMGMQMLMEKYGDQAM 377 (523)
T ss_pred cCcCCCCcCChhh------------------ccCCCCCcccc-------cceeEEEEeeccccchhhhhhcccccccccc
Confidence 3211111222110 00000000000 0001111100
Q ss_pred ----------cc--c----cc-----CCe-----EeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccc
Q 012024 286 ----------SA--G----QV-----NGK-----QRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQD 339 (472)
Q Consensus 286 ----------~~--~----~~-----~g~-----~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 339 (472)
+. + .. .+. ..|+|||++|.. ..|
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~-~~~------------------------------ 426 (523)
T PRK10965 378 AGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM-NKP------------------------------ 426 (523)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCeECCC-CCc------------------------------
Confidence 00 0 00 000 125899988852 111
Q ss_pred eeEEeecCCcEEEEEEEcCCC-CCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEe---
Q 012024 340 TAVMGADYRAFIEIVFQNDED-IIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIAL--- 415 (472)
Q Consensus 340 ~~~~~~~~g~~ve~vi~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a--- 415 (472)
.+.++.|++++|+|.|.+. +.|||||||++||||++++.+.. ...+.|||||.|++ +.+.|++++
T Consensus 427 --~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~--------~~~~~wkDTv~v~~-~~~~i~~~f~~~ 495 (523)
T PRK10965 427 --MFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPA--------AHRAGWKDTVRVEG-GRSEVLVKFDHD 495 (523)
T ss_pred --ceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCC--------ccccccccEEEECC-cEEEEEEEecCC
Confidence 1457899999999999985 68999999999999999864321 12368999999987 666666555
Q ss_pred -cCceeeEeeecchhHHhcccEEEEEEe
Q 012024 416 -DNVGMWNLRSESWARQYLGQQFYLRVY 442 (472)
Q Consensus 416 -dnpG~w~~HCHil~H~d~GMm~~~~V~ 442 (472)
+++|.||||||||+|||.|||..|+|.
T Consensus 496 ~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 496 APKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred CCCCCCEEEEeCchhhhccCccceeEeC
Confidence 467899999999999999999999874
No 14
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.4e-72 Score=590.96 Aligned_cols=382 Identities=20% Similarity=0.260 Sum_probs=277.8
Q ss_pred cccccccCCeeEeccCCCCCCCCCCCCCCc-cCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCCC
Q 012024 2 SLTATSIRSAFANGNGIQNRRNSFEDGVYG-TTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPR 80 (472)
Q Consensus 2 ~~~n~l~~~tsiHwHG~~~~~~~~~DGv~~-tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~ 80 (472)
.|+|+|+++|+|||||+++. ++|||+|+ +||+|+||++|+|+|++ .++||||||||...|+.+||+|+|||++++.
T Consensus 89 ~v~N~l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I~PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~ 165 (587)
T TIGR01480 89 RVTNTLPEDTSIHWHGILLP--FQMDGVPGVSFAGIAPGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEP 165 (587)
T ss_pred EEEcCCCCCceEEcCCCcCC--ccccCCCcccccccCCCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCcc
Confidence 48999999999999999974 57999999 99999999999999999 5899999999999999999999999998654
Q ss_pred CCCCCCCCCCccEEEEeccccCCHHHHHHHhh----------------------cCC---------C-------C-----
Q 012024 81 IPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLD----------------------KGK---------K-------L----- 117 (472)
Q Consensus 81 ~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~----------------------~~~---------~-------~----- 117 (472)
++. .+|+|++|+|+||++.+...+...+. .|. + .
T Consensus 166 ~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv 242 (587)
T TIGR01480 166 DPV---RADREHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADV 242 (587)
T ss_pred ccC---CCCceEEEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhccccccccccccccccccccCCcccccc
Confidence 333 45899999999999876554422111 010 0 0
Q ss_pred -CCCCeEEECCCCC--CceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEE
Q 012024 118 -PLPDGILINGRGS--GAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLV 194 (472)
Q Consensus 118 -~~~d~~liNG~~~--~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v 194 (472)
.....+||||+.. .+++.+++|++|||||||+|+.+.+.|+|+||+|+|||+||++++|++++.|.|++||||||+|
T Consensus 243 ~G~~~~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV 322 (587)
T TIGR01480 243 NGSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIV 322 (587)
T ss_pred cCccceEEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEE
Confidence 0112489999962 3569999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCceEEEEeeeecCCCCceEEEEEEeCCCCCCCCCCCCCCC---ccccc-c---------chh--hccccc----
Q 012024 195 TADQPARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPT---VQIDW-S---------LNQ--ARSIRS---- 255 (472)
Q Consensus 195 ~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~---~~~~~-~---------~~~--~~~~~~---- 255 (472)
+++ ..|.|+|++..... .....++|++.+.......+++..|. .+... . +.. ......
T Consensus 323 ~~~-~~g~~~i~a~~~~~--~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (587)
T TIGR01480 323 EPT-GDDAFTIFAQDSDR--TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRA 399 (587)
T ss_pred ecC-CCceEEEEEEecCC--CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccc
Confidence 987 45799999866432 23567788876542111111111110 01000 0 000 000000
Q ss_pred ------C---C--CC----------------CCC-----CCCCC--------CCCC----------ccccceeeEEEecc
Q 012024 256 ------N---L--TA----------------SGP-----RPNPQ--------GSYH----------YGLINTTKTIRLSS 285 (472)
Q Consensus 256 ------~---l--~~----------------~~~-----~~~p~--------~~~~----------~~~~~~~~~~~~~~ 285 (472)
. + .. .+. ...|. .... .....++|++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L 479 (587)
T TIGR01480 400 QSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHL 479 (587)
T ss_pred cccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEE
Confidence 0 0 00 000 00000 0000 00012445554443
Q ss_pred cccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEEEcCCCCCCCe
Q 012024 286 SAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDEDIIQSY 365 (472)
Q Consensus 286 ~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~HP~ 365 (472)
+. ......|+|||+.|.+ .. .+.++.|+.|+|+|.|...+.|||
T Consensus 480 ~g--~m~~~~wtiNG~~~~~-~~---------------------------------pl~v~~Gervri~l~N~t~~~Hpm 523 (587)
T TIGR01480 480 TG--NMERFAWSFDGEAFGL-KT---------------------------------PLRFNYGERLRVVLVNDTMMAHPI 523 (587)
T ss_pred cC--CCceeEEEECCccCCC-CC---------------------------------ceEecCCCEEEEEEECCCCCCcce
Confidence 21 1134579999988741 11 145799999999999999999999
Q ss_pred eecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceeeEeeecchhHHhcccEEEEEE
Q 012024 366 HLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRV 441 (472)
Q Consensus 366 HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V 441 (472)
||||+.|+|+..++ .+ +.+|||+.|+|++++.++|++||||.|+||||++.|++.|||..|+|
T Consensus 524 HlHG~~f~v~~~~G-~~------------~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 524 HLHGMWSELEDGQG-EF------------QVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred eEcCceeeeecCCC-cc------------cccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 99999999987643 11 46789999999999999999999999999999999999999999987
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.8e-71 Score=573.63 Aligned_cols=358 Identities=16% Similarity=0.179 Sum_probs=258.6
Q ss_pred cccccccCCeeEeccCCCCCCCCCCCCCCccCCCCCCCCeEEEEEEeCCceeeeEEecccc----hhhhcCceeEEEEeC
Q 012024 2 SLTATSIRSAFANGNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLA----FHKAAGGFGGIRILS 77 (472)
Q Consensus 2 ~~~n~l~~~tsiHwHG~~~~~~~~~DGv~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~----~q~~~Gl~G~liV~~ 77 (472)
-++|.|+++|+|||||+++... .+||+ +++|+||++|+|+|++.+++||||||||.+ .|+++||+|+|||++
T Consensus 90 ~v~N~L~~~ttiHwHGl~~~~~-~~~g~---~~~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d 165 (471)
T PRK10883 90 IYSNRLTEPVSMTVSGLQVPGP-LMGGP---ARMMSPNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVED 165 (471)
T ss_pred EEEeCCCCCCceeECCccCCCC-CCCCc---cccCCCCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeC
Confidence 4799999999999999999765 57775 378999999999999977799999999965 599999999999999
Q ss_pred CCCCCCCCCC--CCCccEEEEeccccCCHHHHHHHhhcCCCCCCCCeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcE
Q 012024 78 RPRIPVPFPD--PAGDYTVLIGDWYKSNHTDLRAHLDKGKKLPLPDGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSL 155 (472)
Q Consensus 78 ~~~~~~~~~~--~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~ 155 (472)
+.+.+.+++. ..+|++|+|+||+++....... .........+|.++|||+. .|.++|++| +|||||||+|+.+.+
T Consensus 166 ~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~-~~~~~~g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~ 242 (471)
T PRK10883 166 EVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY-NEPGSGGFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRY 242 (471)
T ss_pred CcccccCCcccCCCcceeEEeeeeeeccCCCccc-cccccCCccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceE
Confidence 7654444432 3459999999999886543211 1112234578999999997 479999885 899999999999999
Q ss_pred eEEE-eCceeEEEEeCCccc-cceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeeeecCC-C----C------ceEEEE
Q 012024 156 NFRI-QNHKMKLVEVEGTHT-LQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRFTST-V----L------TTTGIL 222 (472)
Q Consensus 156 ~~~i-~~h~~~via~DG~~~-~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~~~~-~----~------~~~ail 222 (472)
.|+| |+|+|+|||+||+++ +|..+++|.|+|||||||+|++++ .+.+.|.+....... . . ....++
T Consensus 243 ~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
T PRK10883 243 QLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVL 321 (471)
T ss_pred EEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCC-CceEEEECCCccccccccccccCCccccccceeE
Confidence 9999 899999999997776 899999999999999999999974 456666542211000 0 0 011122
Q ss_pred EEeCCCCCCCCCCCCCCCccccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEecccccccCCeEeEEEcCee
Q 012024 223 HYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVS 302 (472)
Q Consensus 223 ~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~ 302 (472)
+...... .+..+ ..++..+.... ..+. .....+++.+.. ..|.|||++
T Consensus 322 ~~~~~~~-----~~~~~-----------~~~p~~l~~~~--~~~~------~~~~~~~~~l~~--------~~~~INg~~ 369 (471)
T PRK10883 322 TLRPTGL-----LPLVT-----------DNLPMRLLPDE--IMEG------SPIRSREISLGD--------DLPGINGAL 369 (471)
T ss_pred EEEcccc-----ccCCC-----------CcCChhhcCCC--CCCC------CCcceEEEEecC--------CcCccCCcc
Confidence 2221110 00000 00011111000 0000 011234444432 246899999
Q ss_pred ccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCC
Q 012024 303 FIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQW 382 (472)
Q Consensus 303 f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~ 382 (472)
|.+...+ +.+++|++++|+|.|. +.|||||||++|||+++++...
T Consensus 370 ~~~~~~~---------------------------------~~~~~g~~e~W~~~n~--~~HP~HlHg~~FqVl~~~G~~~ 414 (471)
T PRK10883 370 WDMNRID---------------------------------VTAQQGTWERWTVRAD--MPQAFHIEGVMFLIRNVNGAMP 414 (471)
T ss_pred cCCCcce---------------------------------eecCCCCEEEEEEECC--CCcCEeECCccEEEEEecCCCC
Confidence 8632111 3568999999999885 5899999999999999976421
Q ss_pred CCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCce----eeEeeecchhHHhcccEEEEEEecC
Q 012024 383 TSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVG----MWNLRSESWARQYLGQQFYLRVYTA 444 (472)
Q Consensus 383 ~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG----~w~~HCHil~H~d~GMm~~~~V~~~ 444 (472)
. .....|||||.|+ +.+.|+++++++| .||||||||+|||.|||..|+|.++
T Consensus 415 ~--------~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 415 F--------PEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNPA 470 (471)
T ss_pred C--------ccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEecC
Confidence 1 1124799999996 4699999999887 8999999999999999999999754
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.3e-58 Score=473.56 Aligned_cols=370 Identities=21% Similarity=0.225 Sum_probs=261.5
Q ss_pred cccccccCCeeEeccCCCCCCCCCCCCCCc-cCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCCC
Q 012024 2 SLTATSIRSAFANGNGIQNRRNSFEDGVYG-TTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPR 80 (472)
Q Consensus 2 ~~~n~l~~~tsiHwHG~~~~~~~~~DGv~~-tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~ 80 (472)
.++|.|.++|+|||||+.++ +.+||++. +|+++.||++++|.|+.. ++||||||+|.+.|+++||+|++||+++..
T Consensus 77 ~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~~-~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~ 153 (451)
T COG2132 77 DLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQD-VPGTYWYHPHTHGQVYDGLAGALIIEDENS 153 (451)
T ss_pred EEEeCCCCCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecCC-CCcceEeccCCCchhhcccceeEEEeCCCC
Confidence 57999998899999998775 67999988 999999999999999994 677999999999999999999999999765
Q ss_pred CCCCCCCCCCccEEEEeccccCCHHHHHHHhhcCCCCCCCCeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEe
Q 012024 81 IPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDKGKKLPLPDGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQ 160 (472)
Q Consensus 81 ~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~ 160 (472)
.+. .+|++.++++.+|+.......... ........++..+|||+. .+.+.++ +++|||||+|+++.+.+.+++.
T Consensus 154 ~~~---~~d~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~vnG~~-~p~~~~~-~g~~rlRl~n~~~~~~~~~~~~ 227 (451)
T COG2132 154 EPL---GVDDEPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTLLVNGAI-LPFKAVP-GGVVRLRLLNAGNARTYHLALG 227 (451)
T ss_pred CCC---CCCceEEEEEeeeecCCCCccccC-CccccCCCCCeEEECCCc-cceeecC-CCeEEEEEEecCCceEEEEEec
Confidence 443 346666777777776544332221 122234567899999974 4455554 4569999999999999999999
Q ss_pred CceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeeeecCCCCceEEEEEEeCCCCCC---CCCCCC
Q 012024 161 NHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRFTSTVLTTTGILHYSNSAGPV---SGPIPG 237 (472)
Q Consensus 161 ~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~---~~~~p~ 237 (472)
+++|+||++||.++++..++.+.|+|||||||+|++++ .+.+.|.+...... ....+........... ......
T Consensus 228 ~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~-~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (451)
T COG2132 228 GGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND-GGAVTLTALGEDMP--DTLKGFRAPNPILTPSYPVLNGRVG 304 (451)
T ss_pred CceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC-CCeEEEEeccccCC--ceeeeeecccccccccccccccccc
Confidence 99999999999999888899999999999999999984 56777776541111 1111211111110000 000000
Q ss_pred CCCccccccchhhcccccCCCCCCCCCCCCCCCCccccceeeEEEecccccccCCeEeEEEcCeeccCCCCccccccccc
Q 012024 238 GPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFK 317 (472)
Q Consensus 238 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~ 317 (472)
.+..+. ...... ..+.... ..+. ...+..+.+.. ..+...|.+|++.|....
T Consensus 305 ~~~~d~---~~~~~~--~~~~~~~--~~~~-------~~~~~~~~l~~----~~~~~~~~~n~~~~~~~~---------- 356 (451)
T COG2132 305 APTGDM---ADHAPV--GLLVTIL--VEPG-------PNRDTDFHLIG----GIGGYVWAINGKAFDDNR---------- 356 (451)
T ss_pred CCCcch---hhcccc--ccchhhc--CCCc-------ccccccchhhc----ccccccccccCccCCCCc----------
Confidence 010000 000000 0000000 0000 00111111111 123356888888775311
Q ss_pred cCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCc
Q 012024 318 IGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVA 397 (472)
Q Consensus 318 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~ 397 (472)
..+.++.|++++|+|+|.+.+.|||||||+.|+|++.+.. .-...+.|
T Consensus 357 -----------------------~~~~~~~G~~~~~~i~n~~~~~HP~HlHg~~F~v~~~~~~---------~~~~~~~~ 404 (451)
T COG2132 357 -----------------------VTLIAKAGTRERWVLTNDTPMPHPFHLHGHFFQVLSGDAP---------APGAAPGW 404 (451)
T ss_pred -----------------------CceeecCCCEEEEEEECCCCCccCeEEcCceEEEEecCCC---------cccccCcc
Confidence 1245789999999999999999999999999999999711 12234789
Q ss_pred cceEEeCCCCEEEEEEEecCceeeEeeecchhHHhcccEEEEEEec
Q 012024 398 RVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYT 443 (472)
Q Consensus 398 rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~ 443 (472)
|||+.+.+++.++|||.+++||.||||||+++|++.|||..+.|..
T Consensus 405 kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 405 KDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred ceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEecC
Confidence 9999999999999999999999999999999999999999998753
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=9.8e-39 Score=313.58 Aligned_cols=214 Identities=15% Similarity=0.163 Sum_probs=171.9
Q ss_pred ccccccc--CCeeEeccCCCCCCCCCCCCCCc-cCCCCCCCCeEEEEEEeCCceeeeEEeccc----chhhhcCceeEEE
Q 012024 2 SLTATSI--RSAFANGNGIQNRRNSFEDGVYG-TTCPIPPGKNFTYILQVKDQIGSFYYFPSL----AFHKAAGGFGGIR 74 (472)
Q Consensus 2 ~~~n~l~--~~tsiHwHG~~~~~~~~~DGv~~-tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~----~~q~~~Gl~G~li 74 (472)
.|+|.+. .+.++||||.. ++||++. +| |+||++|+|+|.+ +++||||||||. ..|++.||+|+||
T Consensus 72 ~v~N~~~~~~~h~~h~H~~~-----~~dg~~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~li 143 (311)
T TIGR02376 72 TLINPPTNTMPHNVDFHAAT-----GALGGAALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIM 143 (311)
T ss_pred EEEeCCCCCCceeeeecCCC-----ccCCCCccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEE
Confidence 4789875 47889999862 5899887 77 9999999999999 589999999994 5799999999999
Q ss_pred EeCCCCCCCCCCCCCCccEEEEeccccCCHHHHHHHhh-c--CCCCCCCCeEEECCCCC--CceEEEeCCcEEEEEEEEc
Q 012024 75 ILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLD-K--GKKLPLPDGILINGRGS--GAAFNVEQGKTYRLRISNV 149 (472)
Q Consensus 75 V~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~-~--~~~~~~~d~~liNG~~~--~~~~~v~~g~~~rlR~in~ 149 (472)
|++++..+ ..|+|++|+++||+++........+. . .....+++.++|||+.. .+.+++++|+++||||||+
T Consensus 144 V~~~~~~~----~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa 219 (311)
T TIGR02376 144 VLPREGLP----EYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGALTGDNALTAGVGERVLFVHS 219 (311)
T ss_pred eeccCCCc----CcceeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCCCCCCcccccCCcEEEEEEcC
Confidence 99865322 45889999999999975432110000 0 00125678999999941 2467999999999999999
Q ss_pred cCCCcEeEEEeCceeEEEEeCCcccccee--eeEEEEcCCCeEEEEEEeCCCCCceEEEEeeeecCCCCceEEEEEEeCC
Q 012024 150 GLQNSLNFRIQNHKMKLVEVEGTHTLQTT--YSSLDVHVGQSYSVLVTADQPARDYYIVVSSRFTSTVLTTTGILHYSNS 227 (472)
Q Consensus 150 ~~~~~~~~~i~~h~~~via~DG~~~~p~~--~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~ 227 (472)
+..+.+.|+++++.+++|+.||.++.+.. ++++.|+||||+||+|++++ +|.|++++............|+|+|++.
T Consensus 220 ~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~~~~~~~~~~~~g~~~~i~~~g~ 298 (311)
T TIGR02376 220 QPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAYVDHNLIEAFEKGAAAQVKVEGA 298 (311)
T ss_pred CCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC-CeEEEEECcHHHHHHhCCCEEEEEECCC
Confidence 99999999999999999999999997644 89999999999999999995 7999999876543223357799999865
Q ss_pred C
Q 012024 228 A 228 (472)
Q Consensus 228 ~ 228 (472)
.
T Consensus 299 ~ 299 (311)
T TIGR02376 299 W 299 (311)
T ss_pred C
Confidence 4
No 18
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.97 E-value=2e-31 Score=232.77 Aligned_cols=107 Identities=29% Similarity=0.486 Sum_probs=97.5
Q ss_pred ccceeEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEec
Q 012024 337 YQDTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALD 416 (472)
Q Consensus 337 ~~~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ad 416 (472)
+.+..++.++.|++|+|+|+|.+...|||||||++|+|++++.+.++......+++.+|.||||+.|+++++++|||++|
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~ 109 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD 109 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET
T ss_pred CCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee
Confidence 44677899999999999999999999999999999999999988776555556788999999999999999999999999
Q ss_pred CceeeEeeecchhHHhcccEEEEEEec
Q 012024 417 NVGMWNLRSESWARQYLGQQFYLRVYT 443 (472)
Q Consensus 417 npG~w~~HCHil~H~d~GMm~~~~V~~ 443 (472)
|||.|+||||+++|+|.|||+.|.|.+
T Consensus 110 ~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 110 NPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp STEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred cceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 999999999999999999999999864
No 19
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.96 E-value=7.3e-29 Score=221.43 Aligned_cols=137 Identities=36% Similarity=0.661 Sum_probs=114.8
Q ss_pred CccEEEEeccccCCHHHHHH-HhhcC----CCCCCCCeEEECCCC------------CCceEEEeCCcEEEEEEEEccCC
Q 012024 90 GDYTVLIGDWYKSNHTDLRA-HLDKG----KKLPLPDGILINGRG------------SGAAFNVEQGKTYRLRISNVGLQ 152 (472)
Q Consensus 90 ~e~~l~l~d~~~~~~~~~~~-~~~~~----~~~~~~d~~liNG~~------------~~~~~~v~~g~~~rlR~in~~~~ 152 (472)
+|++|+|+||||++...+.. .+..+ ..++++++++|||++ ..+.++|++|++|||||||+|+.
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~ 80 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGAS 80 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCC
Confidence 48999999999987766543 33332 237899999999964 25799999999999999999999
Q ss_pred CcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeeee----cCCCCceEEEEEEeC
Q 012024 153 NSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRF----TSTVLTTTGILHYSN 226 (472)
Q Consensus 153 ~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~----~~~~~~~~ail~y~~ 226 (472)
+.+.|+|+||+|+|||+||.+++|.++++|.|++||||||+|++++++|+|||++.... .....++.|+|+|.+
T Consensus 81 ~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 81 TSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp -BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred eeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999977899999996221 123457899999975
No 20
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.94 E-value=2.8e-27 Score=198.98 Aligned_cols=77 Identities=27% Similarity=0.556 Sum_probs=72.5
Q ss_pred cccccccCCeeEeccCCCCCCCCCCCCCCc-cCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCC
Q 012024 2 SLTATSIRSAFANGNGIQNRRNSFEDGVYG-TTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSR 78 (472)
Q Consensus 2 ~~~n~l~~~tsiHwHG~~~~~~~~~DGv~~-tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 78 (472)
.|+|.|.++++|||||+++...+||||+++ +||+|.||++|+|+|++++++||||||||...|..+||+|+|||+++
T Consensus 39 ~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 39 TVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred EEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 589999999999999999999999999999 99999999999999999766999999999998888999999999986
No 21
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.60 E-value=1.4e-13 Score=135.69 Aligned_cols=243 Identities=12% Similarity=0.029 Sum_probs=155.5
Q ss_pred CCeEEECCCCCCceEEEeCCcEEEEEEEEccC-CCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCC
Q 012024 120 PDGILINGRGSGAAFNVEQGKTYRLRISNVGL-QNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQ 198 (472)
Q Consensus 120 ~d~~liNG~~~~~~~~v~~g~~~rlR~in~~~-~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~ 198 (472)
.+..++||+...|++++++|++++++|.|... ...+.++++++. +.||... ...|.||+++.+-+.++
T Consensus 47 ~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ty~F~~~- 115 (311)
T TIGR02376 47 YQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETATLRFKAT- 115 (311)
T ss_pred EEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeEEEEEEcC-
Confidence 45789999976689999999999999999863 246778887763 4676431 22389999999999987
Q ss_pred CCCceEEEEeeee--cCCC-CceEEEEEEeCCCCCCCCCCCCCCCccccccchhhcccccCCCCCCCCCCCCCCCCcccc
Q 012024 199 PARDYYIVVSSRF--TSTV-LTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLI 275 (472)
Q Consensus 199 ~~g~y~i~~~~~~--~~~~-~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 275 (472)
.+|.||....... ..+. ....+.|.+.... ..+. ...++-..+. ++.+...... .+
T Consensus 116 ~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~-----~~~~-~d~e~~l~l~-----d~~~~~~~~~---~~------- 174 (311)
T TIGR02376 116 RPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPRE-----GLPE-YDKEYYIGES-----DLYTPKDEGE---GG------- 174 (311)
T ss_pred CCEEEEEEcCCCCchhHHhhcCcceEEEeeccC-----CCcC-cceeEEEeee-----eEeccccccc---cc-------
Confidence 5899999876421 1111 1234455554332 1110 1011110010 1111100000 00
Q ss_pred ceeeEEEecccccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEE
Q 012024 276 NTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVF 355 (472)
Q Consensus 276 ~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi 355 (472)
.... .... .. ......+.|||+.+.. .| .+.++.|++++|.|
T Consensus 175 ~~~~--~~~~-~~-~~~~~~~~iNG~~~~~--~~--------------------------------~~~v~~G~~~RlRi 216 (311)
T TIGR02376 175 AYED--DVAA-MR-TLTPTHVVFNGAVGAL--TG--------------------------------DNALTAGVGERVLF 216 (311)
T ss_pred cccc--hHHH-Hh-cCCCCEEEECCccCCC--CC--------------------------------CcccccCCcEEEEE
Confidence 0000 0000 00 0011357889975421 00 12467899999999
Q ss_pred EcCCC-CCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCC-ccceEEeCCCCEEEEEEEecCceeeEeeecchhHH-h
Q 012024 356 QNDED-IIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAV-ARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQ-Y 432 (472)
Q Consensus 356 ~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~-~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~-d 432 (472)
.|.+. ..+.||++|++|.++...+....+ +. ..||+.|.|++.+.|.++++.||.|++|||...+. .
T Consensus 217 iNa~~~~~~~~~~~g~~~~~v~~DG~~~~~----------~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~ 286 (311)
T TIGR02376 217 VHSQPNRDSRPHLIGGHGDYVWVTGKFANP----------PNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFE 286 (311)
T ss_pred EcCCCCCCCCCeEecCCceEEEECCcccCC----------CCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHh
Confidence 99976 569999999999999996543221 22 26999999999999999999999999999999887 6
Q ss_pred cccEEEEEEe
Q 012024 433 LGQQFYLRVY 442 (472)
Q Consensus 433 ~GMm~~~~V~ 442 (472)
.||++.++|.
T Consensus 287 ~g~~~~i~~~ 296 (311)
T TIGR02376 287 KGAAAQVKVE 296 (311)
T ss_pred CCCEEEEEEC
Confidence 7999999874
No 22
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.50 E-value=3e-14 Score=124.42 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=55.7
Q ss_pred cccccc---cCCeeEeccCCCCCCCCCCCCCCc-cCCCCCCC---C-e--EEEEEEeCCceeeeEEecccchhhhcCcee
Q 012024 2 SLTATS---IRSAFANGNGIQNRRNSFEDGVYG-TTCPIPPG---K-N--FTYILQVKDQIGSFYYFPSLAFHKAAGGFG 71 (472)
Q Consensus 2 ~~~n~l---~~~tsiHwHG~~~~~~~~~DGv~~-tq~~i~pG---~-~--~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G 71 (472)
.|+|.. ..+..||+||......+.|||++. +||+|.|+ + . .++.|+.+ ++||||||||...|+.+||+|
T Consensus 65 ~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~-~aGtywyhC~~pgH~~~GM~G 143 (148)
T TIGR03095 65 TVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFS-TAGTYWYLCTYPGHAENGMYG 143 (148)
T ss_pred EEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECC-CCeEEEEEcCChhHHHCCCEE
Confidence 467874 445666666665544456999998 99998884 2 1 23445543 799999999999999999999
Q ss_pred EEEEe
Q 012024 72 GIRIL 76 (472)
Q Consensus 72 ~liV~ 76 (472)
+|||+
T Consensus 144 ~iiV~ 148 (148)
T TIGR03095 144 KIVVK 148 (148)
T ss_pred EEEEC
Confidence 99995
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.00 E-value=3.3e-10 Score=120.24 Aligned_cols=73 Identities=19% Similarity=0.369 Sum_probs=61.0
Q ss_pred cccccccCCeeEeccCCCCCCCCCCCCCC---ccCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEe
Q 012024 2 SLTATSIRSAFANGNGIQNRRNSFEDGVY---GTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRIL 76 (472)
Q Consensus 2 ~~~n~l~~~tsiHwHG~~~~~~~~~DGv~---~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 76 (472)
.|+|.+..+..|||||+..... ..||.. .....|+||++++|+|.+ +++|+||||||...|...||++.+.|.
T Consensus 512 ~l~N~t~~~HpmHlHG~~f~v~-~~~G~~~~~~dTv~V~Pg~t~~~~f~a-d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 512 VLVNDTMMAHPIHLHGMWSELE-DGQGEFQVRKHTVDVPPGGKRSFRVTA-DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred EEECCCCCCcceeEcCceeeee-cCCCcccccCCceeeCCCCEEEEEEEC-CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 5789999999999999975332 236642 223689999999999999 689999999999999999999999874
No 24
>PLN02604 oxidoreductase
Probab=98.97 E-value=2.3e-09 Score=114.22 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=70.2
Q ss_pred EeecCCcEEEEEEEcCC-CCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceee
Q 012024 343 MGADYRAFIEIVFQNDE-DIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 421 (472)
Q Consensus 343 ~~~~~g~~ve~vi~N~~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w 421 (472)
+.++.|+.+++.+.|.. ...|+||+||... .+. .|... ...-....|+||+..+++|+++++|.|
T Consensus 57 i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~--~~~---~~~DG---------~~~~tq~~i~pg~s~~y~f~~~~~Gt~ 122 (566)
T PLN02604 57 ILAQQGDTVIVELKNSLLTENVAIHWHGIRQ--IGT---PWFDG---------TEGVTQCPILPGETFTYEFVVDRPGTY 122 (566)
T ss_pred EEEECCCEEEEEEEeCCCCCCCCEEeCCCCC--CCC---ccccC---------CCccccCccCCCCeEEEEEEcCCCEEE
Confidence 57899999999999986 5689999999942 111 01000 111234578999999999999999999
Q ss_pred EeeecchhHHhcccEEEEEEecCC
Q 012024 422 NLRSESWARQYLGQQFYLRVYTAS 445 (472)
Q Consensus 422 ~~HCHil~H~d~GMm~~~~V~~~~ 445 (472)
.||||...|.+.||+..+.|.++.
T Consensus 123 wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 123 LYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred EEeeCcHHHHhCCCeEEEEEEecC
Confidence 999999999999999999987653
No 25
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.90 E-value=8.7e-08 Score=101.90 Aligned_cols=236 Identities=14% Similarity=0.143 Sum_probs=142.3
Q ss_pred CeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEE---eCCccccceeeeEEEEcCCCeEEEEEEeC
Q 012024 121 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVE---VEGTHTLQTTYSSLDVHVGQSYSVLVTAD 197 (472)
Q Consensus 121 d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via---~DG~~~~p~~~~~l~l~~G~R~dv~v~~~ 197 (472)
..+++||+...|+|+++.|+++++++.|--.. ...++.+|. .+.. .||.. .+..-.|.||+.+...+++.
T Consensus 23 ~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~-~tsiHwHGl--~q~~~~~~DGv~----~vTq~pI~PG~s~~Y~f~~~ 95 (539)
T TIGR03389 23 SILTVNGKFPGPTLYAREGDTVIVNVTNNVQY-NVTIHWHGV--RQLRNGWADGPA----YITQCPIQPGQSYVYNFTIT 95 (539)
T ss_pred EEEEECCcccCCEEEEEcCCEEEEEEEeCCCC-CeeEecCCC--CCCCCCCCCCCc----ccccCCcCCCCeEEEEEEec
Confidence 57999999877999999999999999998764 445555554 3332 57754 23334689999999999985
Q ss_pred CCCCceEEEEeeeecCCCCceEEEEEEeCCCCCCCCCCCCC-CCccccccchhhcccccCCCCCCCCCCCCCCCCccccc
Q 012024 198 QPARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGG-PTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLIN 276 (472)
Q Consensus 198 ~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~-p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 276 (472)
+..|.||-....... .....+-|...+... .+.|.. ...+....+. ++..... .. .
T Consensus 96 ~~~GT~WYHsH~~~~--~~Gl~G~lIV~~~~~---~~~~~~~~d~e~~l~l~-----Dw~~~~~-----~~--------~ 152 (539)
T TIGR03389 96 GQRGTLWWHAHISWL--RATVYGAIVILPKPG---VPYPFPKPDREVPIILG-----EWWNADV-----EA--------V 152 (539)
T ss_pred CCCeeEEEecCchhh--hccceEEEEEcCCCC---CCCCCCCCCceEEEEec-----ccccCCH-----HH--------H
Confidence 468999987765321 112344444433221 111110 0011100000 0000000 00 0
Q ss_pred eeeEEEecccccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEEE
Q 012024 277 TTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQ 356 (472)
Q Consensus 277 ~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~ 356 (472)
... . ... .....-...+.|||+...... | . + ....+++++.|++++|.|.
T Consensus 153 ~~~-~-~~~-~~~~~~~d~~liNG~~~~~~~---------------~-~-----~------~~~~~i~v~~G~~~RlRlI 202 (539)
T TIGR03389 153 INQ-A-NQT-GGAPNVSDAYTINGHPGPLYN---------------C-S-----S------KDTFKLTVEPGKTYLLRII 202 (539)
T ss_pred HHH-H-Hhc-CCCCCccceEEECCCcCCCCC---------------C-C-----C------CCceEEEECCCCEEEEEEE
Confidence 000 0 000 000001124778887531000 0 0 0 0134678999999999999
Q ss_pred cCCCC-CCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecC-ceeeEeeecc
Q 012024 357 NDEDI-IQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VGMWNLRSES 427 (472)
Q Consensus 357 N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn-pG~w~~HCHi 427 (472)
|.+.. .+-|||+||+|+|++..+.. ..|...|++.|.+|+.+.|.++++. +|.|.++-+.
T Consensus 203 Na~~~~~~~~~idgH~~~VIa~DG~~-----------~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~ 264 (539)
T TIGR03389 203 NAALNDELFFAIANHTLTVVEVDATY-----------TKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARP 264 (539)
T ss_pred eccCCceEEEEECCCeEEEEEeCCcc-----------cCceEeCeEEecCCCEEEEEEECCCCCceEEEEEec
Confidence 99754 48899999999999997532 2367789999999999999999976 8988877554
No 26
>PLN02835 oxidoreductase
Probab=98.84 E-value=2.2e-07 Score=98.28 Aligned_cols=223 Identities=15% Similarity=0.115 Sum_probs=134.2
Q ss_pred CeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEE-EEeCCccccceeeeEEEEcCCCeEEEEEEeCCC
Q 012024 121 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKL-VEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQP 199 (472)
Q Consensus 121 d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~v-ia~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~ 199 (472)
..++|||+...|+|++++|+++++++.|--.. ...++.+|..+.- -..||.+. ..-.|.||+.+..-++..+.
T Consensus 49 ~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~PG~sf~Y~F~~~~q 122 (539)
T PLN02835 49 QVILINGQFPGPRLDVVTNDNIILNLINKLDQ-PFLLTWNGIKQRKNSWQDGVLG-----TNCPIPPNSNYTYKFQTKDQ 122 (539)
T ss_pred EEEEECCcCCCCCEEEECCCEEEEEEEeCCCC-CCcEEeCCcccCCCCCCCCCcc-----CcCCCCCCCcEEEEEEECCC
Confidence 47999999877999999999999999999754 4555555544321 23699643 13478999999998887545
Q ss_pred CCceEEEEeeeecCCC-CceEEEEEEeCCCCCCCCCCCC-CCCccccccchhhcccccCCCCCCCCCCCCCCCCccccce
Q 012024 200 ARDYYIVVSSRFTSTV-LTTTGILHYSNSAGPVSGPIPG-GPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINT 277 (472)
Q Consensus 200 ~g~y~i~~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~-~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 277 (472)
.|+||....... +. ....+-|....... .+.|. ....+....+. ++..... . ..
T Consensus 123 ~GT~WYHsH~~~--q~~~Gl~G~lIV~~~~~---~~~p~~~~d~e~~l~l~-----Dw~~~~~------~--------~~ 178 (539)
T PLN02835 123 IGTFTYFPSTLF--HKAAGGFGAINVYERPR---IPIPFPLPDGDFTLLVG-----DWYKTSH------K--------TL 178 (539)
T ss_pred CEeEEEEeCccc--hhcCcccceeEEeCCCC---CCcCCCCCCceEEEEee-----ccccCCH------H--------HH
Confidence 899999875422 21 11233333322110 11111 01111100000 0000000 0 00
Q ss_pred eeEEEecccccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEEEc
Q 012024 278 TKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQN 357 (472)
Q Consensus 278 ~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~N 357 (472)
... +... ....-.....|||+.. ..+.++.|++++|.|.|
T Consensus 179 ~~~--~~~g-~~~~~~d~~liNG~~~-------------------------------------~~~~v~~G~~yRlRliN 218 (539)
T PLN02835 179 QQR--LDSG-KVLPFPDGVLINGQTQ-------------------------------------STFSGDQGKTYMFRISN 218 (539)
T ss_pred HHH--hhcC-CCCCCCceEEEccccC-------------------------------------ceEEECCCCEEEEEEEE
Confidence 000 0000 0000011355666531 12567899999999999
Q ss_pred CCCC-CCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecC-ceeeEee
Q 012024 358 DEDI-IQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VGMWNLR 424 (472)
Q Consensus 358 ~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn-pG~w~~H 424 (472)
.+.. ..-|||.||+|.|++..+... .|...|++.|.+|+.+.|.++++. +|.|-++
T Consensus 219 a~~~~~~~f~i~gH~~~VI~~DG~~v-----------~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~ 276 (539)
T PLN02835 219 VGLSTSLNFRIQGHTMKLVEVEGSHT-----------IQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIV 276 (539)
T ss_pred cCCCccEEEEECCCEEEEEEECCccC-----------CCceeeEEEECcCceEEEEEEcCCCCCcEEEE
Confidence 9864 589999999999999976432 255679999999999999999875 6866655
No 27
>PLN02354 copper ion binding / oxidoreductase
Probab=98.79 E-value=3.4e-07 Score=97.09 Aligned_cols=232 Identities=13% Similarity=0.092 Sum_probs=139.4
Q ss_pred CeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEE-EEeCCccccceeeeEEEEcCCCeEEEEEEeCCC
Q 012024 121 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKL-VEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQP 199 (472)
Q Consensus 121 d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~v-ia~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~ 199 (472)
..++|||+...|.|+++.|+++++++.|.... ...++.+|..+.- -..||.+. ..-.|.||+.+..-+++.+.
T Consensus 47 ~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~sf~Y~F~~~~q 120 (552)
T PLN02354 47 QVILINGQFPGPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTNFTYHFQPKDQ 120 (552)
T ss_pred EEEEECCCCcCCcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCcC-----CcCCCCCCCcEEEEEEeCCC
Confidence 47999999878999999999999999999753 4455555543322 23798543 23479999999999988545
Q ss_pred CCceEEEEeeeecCCC-CceEEEEEEeCCCCCCCCCCCC-CCCccccccchhhcccccCCCCCCCCCCCCCCCCccccce
Q 012024 200 ARDYYIVVSSRFTSTV-LTTTGILHYSNSAGPVSGPIPG-GPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINT 277 (472)
Q Consensus 200 ~g~y~i~~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~-~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 277 (472)
.|+||...... .|. ....+-|...+... .+.|. .+..+....+. ++.... .. ..
T Consensus 121 ~GT~WYHsH~~--~Q~~~Gl~G~lII~~~~~---~~~p~~~~d~e~~l~l~-----Dw~~~~-------~~-------~~ 176 (552)
T PLN02354 121 IGSYFYYPSTG--MHRAAGGFGGLRVNSRLL---IPVPYADPEDDYTVLIG-----DWYTKS-------HT-------AL 176 (552)
T ss_pred CcceEEecCcc--ceecCCccceEEEcCCcC---CCCCCCCcCceEEEEee-----eeccCC-------HH-------HH
Confidence 89999876532 111 11233333332211 01111 01011110010 000000 00 00
Q ss_pred eeEEEecccccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEEEc
Q 012024 278 TKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQN 357 (472)
Q Consensus 278 ~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~N 357 (472)
... +.. ...........|||+..... .....+++++.|++++|.|.|
T Consensus 177 ~~~--~~~-g~~~~~~d~~liNG~~~~~~------------------------------~~~~~~~~v~~Gk~yRlRiIN 223 (552)
T PLN02354 177 KKF--LDS-GRTLGRPDGVLINGKSGKGD------------------------------GKDEPLFTMKPGKTYRYRICN 223 (552)
T ss_pred HHH--Hhc-CCCCCCCCeEEEeCCcCCCC------------------------------CCCceEEEECCCCEEEEEEEe
Confidence 000 000 00000112467787642100 001345789999999999999
Q ss_pred CCCC-CCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecC-ceeeEeeec
Q 012024 358 DEDI-IQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VGMWNLRSE 426 (472)
Q Consensus 358 ~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn-pG~w~~HCH 426 (472)
.+.. ..-|||.||+|.|++..+... .|...|++.|.+|+.+.|.++++. +|.|-+.-.
T Consensus 224 a~~~~~~~f~IdgH~~tVIa~DG~~v-----------~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~ 283 (552)
T PLN02354 224 VGLKSSLNFRIQGHKMKLVEMEGSHV-----------LQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVAS 283 (552)
T ss_pred cCCCceEEEEECCceEEEEEeCCccc-----------CCcceeEEEEccCceEEEEEECCCCCCcEEEEEe
Confidence 9864 489999999999999976432 255579999999999999999975 788777655
No 28
>PLN02792 oxidoreductase
Probab=98.76 E-value=4.7e-07 Score=95.62 Aligned_cols=226 Identities=14% Similarity=0.151 Sum_probs=135.8
Q ss_pred CeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEE---eCCccccceeeeEEEEcCCCeEEEEEEeC
Q 012024 121 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVE---VEGTHTLQTTYSSLDVHVGQSYSVLVTAD 197 (472)
Q Consensus 121 d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via---~DG~~~~p~~~~~l~l~~G~R~dv~v~~~ 197 (472)
..++|||+...|+|++++|+++++++.|-... .. +|+-|-+.+.. .||... + .-.|.||+.+..-++++
T Consensus 36 ~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~-~t--tiHWHGl~q~~~~~~DGv~~----t-qcPI~PG~sftY~F~~~ 107 (536)
T PLN02792 36 RGILINGQFPGPEIRSLTNDNLVINVHNDLDE-PF--LLSWNGVHMRKNSYQDGVYG----T-TCPIPPGKNYTYDFQVK 107 (536)
T ss_pred EEEEECCCCCCCcEEEECCCEEEEEEEeCCCC-Cc--CEeCCCcccCCCCccCCCCC----C-cCccCCCCcEEEEEEeC
Confidence 47999999878999999999999999999653 34 44445455543 799633 2 25789999999988886
Q ss_pred CCCCceEEEEeeeecCCCCceEEEE-EEeCCCCCCCCCCCCCCCccccccchhhcccccCCCCCCCCCCCCCCCCccccc
Q 012024 198 QPARDYYIVVSSRFTSTVLTTTGIL-HYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLIN 276 (472)
Q Consensus 198 ~~~g~y~i~~~~~~~~~~~~~~ail-~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 276 (472)
+..|+||-....... ......+-| .+.....+ .+++ .+..+....+. ++..... . .
T Consensus 108 ~q~GT~WYHsH~~~q-~~~Gl~G~liI~~~~~~~--~p~~-~~d~e~~i~l~-----Dw~~~~~------~--------~ 164 (536)
T PLN02792 108 DQVGSYFYFPSLAVQ-KAAGGYGSLRIYSLPRIP--VPFP-EPAGDFTFLIG-----DWYRRNH------T--------T 164 (536)
T ss_pred CCccceEEecCcchh-hhcccccceEEeCCcccC--cCCC-cccceeEEEec-----ccccCCH------H--------H
Confidence 458999998764311 111123322 33211110 1111 01111110010 0000000 0 0
Q ss_pred eeeEEEecccccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEEE
Q 012024 277 TTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQ 356 (472)
Q Consensus 277 ~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~ 356 (472)
.... +........-.....|||+... ...++.++.|++++|.|.
T Consensus 165 ~~~~--~~~g~~~~~~~d~~liNG~~~~----------------------------------~~~~~~v~~Gk~yRlRli 208 (536)
T PLN02792 165 LKKI--LDGGRKLPLMPDGVMINGQGVS----------------------------------YVYSITVDKGKTYRFRIS 208 (536)
T ss_pred HHHH--hhccCcCCCCCCEEEEeccCCC----------------------------------CcceEEECCCCEEEEEEE
Confidence 0000 0000000001124667776321 012467899999999999
Q ss_pred cCCCC-CCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecC-ceeeEee
Q 012024 357 NDEDI-IQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VGMWNLR 424 (472)
Q Consensus 357 N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn-pG~w~~H 424 (472)
|.+.. ..-|+|.||+|.|++..+... .|...|++.|.+|+.+.|.++++. +|.|-+.
T Consensus 209 Na~~~~~~~f~i~gH~~tVI~~DG~~v-----------~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~ 267 (536)
T PLN02792 209 NVGLQTSLNFEILGHQLKLIEVEGTHT-----------VQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIV 267 (536)
T ss_pred EcCCCceEEEEECCcEEEEEEeCCccC-----------CCcceeEEEEccCceEEEEEEcCCCCceEEEE
Confidence 99865 489999999999999976422 255679999999999999999976 5766554
No 29
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.73 E-value=4.6e-08 Score=82.32 Aligned_cols=90 Identities=14% Similarity=0.081 Sum_probs=67.2
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecC-ce
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VG 419 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn-pG 419 (472)
+++.++.|+.|++.+.|....++.+|.||...---...+|. +.. -.-.|.|++....+|.++. +|
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~-------------~~~-~~~~i~pG~~~~Y~~~~~~~~G 91 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGV-------------PGV-TQCPIAPGESFTYEFTANQQAG 91 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGG-------------TTT-SGSSBSTTEEEEEEEEESSCSE
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCc-------------ccc-cceeEEeecceeeeEeeecccc
Confidence 45788999999999999988889999999653100001110 000 0123678999999999988 99
Q ss_pred eeEeeecchhHHhcccEEEEEEecC
Q 012024 420 MWNLRSESWARQYLGQQFYLRVYTA 444 (472)
Q Consensus 420 ~w~~HCHil~H~d~GMm~~~~V~~~ 444 (472)
.|.||||...+...||...+.|.++
T Consensus 92 t~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 92 TYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999999988878999999987643
No 30
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.72 E-value=1.2e-06 Score=92.97 Aligned_cols=235 Identities=13% Similarity=0.142 Sum_probs=138.0
Q ss_pred CeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEE-EEeCCccccceeeeEEEEcCCCeEEEEEEeC-C
Q 012024 121 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKL-VEVEGTHTLQTTYSSLDVHVGQSYSVLVTAD-Q 198 (472)
Q Consensus 121 d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~v-ia~DG~~~~p~~~~~l~l~~G~R~dv~v~~~-~ 198 (472)
..++|||+...|+|+++.|+++++++.|.-......++.+|..+.- -..||.+.. ..-.|.||+.+...++++ .
T Consensus 28 ~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~v----TQcpI~PG~sf~Y~f~~~~~ 103 (538)
T TIGR03390 28 YSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLA----SQWPIPPGHFFDYEIKPEPG 103 (538)
T ss_pred EEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCccc----ccCCCCCCCcEEEEEEecCC
Confidence 4799999987899999999999999999865445566666654322 237887652 223578999888888764 3
Q ss_pred CCCceEEEEeeeecCCCCceEEEEEEeCCCCCCCCCCCCCCCccccccchhhcccccCCCCCCCCCCCCCCCCcccccee
Q 012024 199 PARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTT 278 (472)
Q Consensus 199 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 278 (472)
.+|.||....... +.....+.|...+... .+... ..+....+. ++.... .+ ...
T Consensus 104 q~GT~WYHsH~~~--Q~~~l~G~lIV~~~~~---~~~~~--d~e~~l~l~-----Dw~~~~-------~~-------~~~ 157 (538)
T TIGR03390 104 DAGSYFYHSHVGF--QAVTAFGPLIVEDCEP---PPYKY--DDERILLVS-----DFFSAT-------DE-------EIE 157 (538)
T ss_pred CCeeeEEecCCch--hhhcceeEEEEccCCc---cCCCc--cCcEEEEEe-----CCCCCC-------HH-------HHH
Confidence 5799998776432 2222445454443221 01100 001100010 010000 00 000
Q ss_pred eEEEecccccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEEEcC
Q 012024 279 KTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQND 358 (472)
Q Consensus 279 ~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~N~ 358 (472)
..+. ..............|||+......... . + . .+.| ....+.++.|++++|.|.|.
T Consensus 158 ~~~~-~~~~~~~~~~d~~liNG~~~~~~~~~~-------~------~-----~--~~~~-~~~~~~v~~G~~yRlRlINa 215 (538)
T TIGR03390 158 QGLL-STPFTWSGETEAVLLNGKSGNKSFYAQ-------I------N-----P--SGSC-MLPVIDVEPGKTYRLRFIGA 215 (538)
T ss_pred hhhh-ccCCccCCCCceEEECCcccccccccc-------c------c-----C--CCCC-cceEEEECCCCEEEEEEEcc
Confidence 0000 000000001124678887432100000 0 0 0 0111 13568899999999999999
Q ss_pred CCC-CCCeeecCCc-eEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCc
Q 012024 359 EDI-IQSYHLNGYQ-FWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNV 418 (472)
Q Consensus 359 ~~~-~HP~HlHG~~-F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnp 418 (472)
+.. ..-|+|.||+ |+|++..+. +..|...|++.|.+|+.+.|.++++.+
T Consensus 216 ~~~~~~~~~idgH~~~~VIa~DG~-----------~~~P~~v~~l~l~~GqRydVlv~~~~~ 266 (538)
T TIGR03390 216 TALSLISLGIEDHENLTIIEADGS-----------YTKPAKIDHLQLGGGQRYSVLFKAKTE 266 (538)
T ss_pred CCceEEEEEECCCCeEEEEEeCCC-----------CCCceEeCeEEEccCCEEEEEEECCCc
Confidence 865 4899999999 999999764 234777899999999999999999763
No 31
>PLN02168 copper ion binding / pectinesterase
Probab=98.72 E-value=1.2e-06 Score=92.61 Aligned_cols=216 Identities=11% Similarity=0.103 Sum_probs=132.0
Q ss_pred CeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEE---eCCccccceeeeEEEEcCCCeEEEEEEeC
Q 012024 121 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVE---VEGTHTLQTTYSSLDVHVGQSYSVLVTAD 197 (472)
Q Consensus 121 d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via---~DG~~~~p~~~~~l~l~~G~R~dv~v~~~ 197 (472)
..+++||+...|.|+++.|+++++++.|--.. .-.++.+| +.+.. .||.+. ..-.|.||+++..-++++
T Consensus 46 ~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~-~ttiHWHG--l~~~~~~~~DGv~g-----tQcpI~PG~sftY~F~~~ 117 (545)
T PLN02168 46 QVIVINDMFPGPLLNATANDVINVNIFNNLTE-PFLMTWNG--LQLRKNSWQDGVRG-----TNCPILPGTNWTYRFQVK 117 (545)
T ss_pred EEEEECCcCCCCcEEEECCCEEEEEEEeCCCC-CccEeeCC--ccCCCCCCcCCCCC-----CcCCCCCCCcEEEEEEeC
Confidence 47999999878999999999999999999764 45555555 44432 599643 224789999999999986
Q ss_pred CCCCceEEEEeeeecCCC-CceEEEEEEeCCCCCCCCCCCC-CCCccccccchhhcccccCCCCCCCCCCCCCCCCcccc
Q 012024 198 QPARDYYIVVSSRFTSTV-LTTTGILHYSNSAGPVSGPIPG-GPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLI 275 (472)
Q Consensus 198 ~~~g~y~i~~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~-~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 275 (472)
+..|+||-..... .|. ....+-|...+... .+.|. .+..+....+. ++.... ..
T Consensus 118 ~q~GT~WYHsH~~--~Q~~~GL~G~lII~~~~~---~~~p~~~~d~e~~l~l~-----Dw~~~~------~~-------- 173 (545)
T PLN02168 118 DQIGSYFYFPSLL--LQKAAGGYGAIRIYNPEL---VPVPFPKPDEEYDILIG-----DWFYAD------HT-------- 173 (545)
T ss_pred CCCceEEEecChh--hhhhCcceeEEEEcCCcc---cCcCcCcccceeeEEEE-----ecCCCC------HH--------
Confidence 4589999977542 121 12334344433221 11111 11111111110 010000 00
Q ss_pred ceeeEEEecccccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEE
Q 012024 276 NTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVF 355 (472)
Q Consensus 276 ~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi 355 (472)
.... .+..... ........|||+.-. ...++++.|++++|+|
T Consensus 174 ~~~~--~~~~g~~-~~~~d~~liNG~~~~-----------------------------------~~~~~v~~G~~yRlRi 215 (545)
T PLN02168 174 VMRA--SLDNGHS-LPNPDGILFNGRGPE-----------------------------------ETFFAFEPGKTYRLRI 215 (545)
T ss_pred HHHh--hhhcCCC-CCCCCEEEEeccCCC-----------------------------------cceEEeCCCCEEEEEE
Confidence 0000 0000000 000123566765310 1246788999999999
Q ss_pred EcCCCC-CCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecC
Q 012024 356 QNDEDI-IQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN 417 (472)
Q Consensus 356 ~N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn 417 (472)
.|.+.. .+-|+|.||+|+|++..+.. ..|...|++.|.+|+.+.|.+++++
T Consensus 216 iNa~~~~~~~~~IdgH~~tVIa~DG~~-----------v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 216 SNVGLKTCLNFRIQDHDMLLVETEGTY-----------VQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred EeccCCceEEEEECCcEEEEEEECCeE-----------CCCceeeEEEEcCCceEEEEEEcCC
Confidence 998755 58999999999999987632 2355679999999999999999974
No 32
>PLN02991 oxidoreductase
Probab=98.71 E-value=7.7e-07 Score=93.92 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=135.3
Q ss_pred CeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeE-EEEeCCccccceeeeEEEEcCCCeEEEEEEeCCC
Q 012024 121 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMK-LVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQP 199 (472)
Q Consensus 121 d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~-via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~ 199 (472)
..++|||+...|.|+++.|+++++++.|.-.. ...++.+|..+. --..||.+. + .-.|.||+.+..-+++++.
T Consensus 48 ~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~-~ttiHWHGi~q~~~~~~DGv~~----t-QcpI~PG~sftY~F~~~~q 121 (543)
T PLN02991 48 QGILINGKFPGPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGVYG----T-TCPIPPGKNYTYALQVKDQ 121 (543)
T ss_pred EEEEEcCCCCCCcEEEECCCEEEEEecCCCCC-CccEEECCcccCCCccccCCCC----C-CCccCCCCcEEEEEEeCCC
Confidence 47999999878999999999999999999753 455555554432 134799643 2 3478999999999988645
Q ss_pred CCceEEEEeeeecCCCCceEEEEEEeCCCCCCCCCCCC-CCCccccccchhhcccccCCCCCCCCCCCCCCCCcccccee
Q 012024 200 ARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPG-GPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTT 278 (472)
Q Consensus 200 ~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~-~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 278 (472)
.|+||........ ......+-|...+... .+.|. .+..+....+. ++.... .. ...
T Consensus 122 ~GT~WYHsH~~~q-~~~Gl~G~lIV~~~~~---~~~p~~~~d~d~~i~l~-----DW~~~~------~~--------~~~ 178 (543)
T PLN02991 122 IGSFYYFPSLGFH-KAAGGFGAIRISSRPL---IPVPFPAPADDYTVLIG-----DWYKTN------HK--------DLR 178 (543)
T ss_pred CcceEEecCcchh-hhCCCeeeEEEeCCcc---cCcccccccceeEEEec-----ceecCC------HH--------HHH
Confidence 8999998764321 1112334343333211 11111 01111100000 000000 00 000
Q ss_pred eEEEecccccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEEEcC
Q 012024 279 KTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQND 358 (472)
Q Consensus 279 ~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~N~ 358 (472)
..+ ... ....-.....|||+.. ...++++.|++++|+|.|.
T Consensus 179 ~~~--~~~-~~~~~~d~~liNG~~~------------------------------------~~~~~v~~G~~yRlRiINa 219 (543)
T PLN02991 179 AQL--DNG-GKLPLPDGILINGRGS------------------------------------GATLNIEPGKTYRLRISNV 219 (543)
T ss_pred HHh--hcC-CCCCCCCEEEEccCCC------------------------------------CceEEECCCCEEEEEEEec
Confidence 000 000 0000012356676531 1236788999999999998
Q ss_pred CCC-CCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecC-ce-eeEe
Q 012024 359 EDI-IQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VG-MWNL 423 (472)
Q Consensus 359 ~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn-pG-~w~~ 423 (472)
+.. .+-|+|.||+|+|++..+.. ..|...|++.|.+|+.+.|.+++|. +| .|+.
T Consensus 220 ~~~~~~~~~idgH~~tVIa~DG~~-----------~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~ 276 (543)
T PLN02991 220 GLQNSLNFRIQNHTMKLVEVEGTH-----------TIQTPFSSLDVHVGQSYSVLITADQPAKDYYIV 276 (543)
T ss_pred cCCeeEEEEECCCEEEEEEeCCcc-----------ccceeeeEEEEcCCcEEEEEEECCCCCCcEEEE
Confidence 865 48999999999999997532 2256679999999999999999987 46 4543
No 33
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.59 E-value=4e-06 Score=89.28 Aligned_cols=236 Identities=12% Similarity=0.142 Sum_probs=137.8
Q ss_pred CeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEE-EEeCCccccceeeeEEEEcCCCeEEEEEEeCCC
Q 012024 121 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKL-VEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQP 199 (472)
Q Consensus 121 d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~v-ia~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~ 199 (472)
..++|||+...|+|+++.|+++++++.|-... ...++.+|..+.- --.||... ..-.|.||+.+..-+++++.
T Consensus 49 ~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~~-----TQcPI~PG~sftY~F~~~dq 122 (596)
T PLN00044 49 EAIGINGQFPGPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVGG-----TNCAIPAGWNWTYQFQVKDQ 122 (596)
T ss_pred EEEEEcCcCCCCcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCCC-----CcCCcCCCCcEEEEEEeCCC
Confidence 47999999878999999999999999999764 5677777755432 24799632 33589999999999998646
Q ss_pred CCceEEEEeeeecCCCCceEEEEEEeCCCCCCCCCCCC-CCC-ccccccchhhcccccCCCCCCCCCCCCCCCCccccce
Q 012024 200 ARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPG-GPT-VQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINT 277 (472)
Q Consensus 200 ~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~-~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 277 (472)
.|+||-....... ......+-|...+... .+.|. .+. .+....+. ++...+. . ..
T Consensus 123 ~GT~WYHsH~~~Q-~~~Gl~GalII~~~~~---~~~P~~~~~~~e~~i~l~-----DW~~~~~------~--------~~ 179 (596)
T PLN00044 123 VGSFFYAPSTALH-RAAGGYGAITINNRDV---IPIPFGFPDGGDITLFIA-----DWYARDH------R--------AL 179 (596)
T ss_pred CceeEeeccchhh-hhCcCeeEEEEcCccc---ccccccCCcccceEEEec-----ccccCCH------H--------HH
Confidence 8999987754321 1112334333333221 11111 010 01100010 0000000 0 00
Q ss_pred eeEEEecccccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEEEc
Q 012024 278 TKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQN 357 (472)
Q Consensus 278 ~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~N 357 (472)
.+.+.... .........|||+.-... +... .+. .....++.++.|+++.|.|.|
T Consensus 180 ~~~l~~g~---~~~~~d~~lING~g~~~~------------n~~~-------~~~----~~~~~~i~V~~Gk~yRlRiIN 233 (596)
T PLN00044 180 RRALDAGD---LLGAPDGVLINAFGPYQY------------NDSL-------VPP----GITYERINVDPGKTYRFRVHN 233 (596)
T ss_pred HHHHhcCC---CCCCCCceEEcccCcccc------------CCcc-------ccC----CCccceEEECCCCEEEEEEEE
Confidence 00000000 000001234566421000 0000 000 001236889999999999999
Q ss_pred CCCC-CCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCc-e--eeE
Q 012024 358 DEDI-IQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNV-G--MWN 422 (472)
Q Consensus 358 ~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnp-G--~w~ 422 (472)
.+.. .--|+|-||+|.|++..+. +..|..-|++.|.+|+.+.|.++++.+ | .||
T Consensus 234 aa~~~~~~fsIdgH~mtVIa~DG~-----------~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i 291 (596)
T PLN00044 234 VGVATSLNFRIQGHNLLLVEAEGS-----------YTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYV 291 (596)
T ss_pred ccCCceEEEEECCCEEEEEEeCCc-----------ccCceeeeeEEEcCCceEEEEEECCCCCCCceEE
Confidence 8754 4789999999999999752 223677899999999999999999874 5 576
No 34
>PRK10883 FtsI repressor; Provisional
Probab=98.53 E-value=5e-06 Score=86.89 Aligned_cols=224 Identities=17% Similarity=0.214 Sum_probs=130.9
Q ss_pred CeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCC
Q 012024 121 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPA 200 (472)
Q Consensus 121 d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~ 200 (472)
..+.+||+...|+|++++|+++++++.|.-.. ...++.+|..+.- ..||+.- ..|.||++++..+..++.+
T Consensus 66 ~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~-~ttiHwHGl~~~~-~~~~g~~-------~~I~PG~~~~y~f~~~~~a 136 (471)
T PRK10883 66 SVWGINGRYLGPTIRVWKGDDVKLIYSNRLTE-PVSMTVSGLQVPG-PLMGGPA-------RMMSPNADWAPVLPIRQNA 136 (471)
T ss_pred eEEEECCcccCCeEEEECCCEEEEEEEeCCCC-CCceeECCccCCC-CCCCCcc-------ccCCCCCeEEEEEecCCCc
Confidence 46899999777999999999999999998754 4566666654221 1144321 1388999999988887778
Q ss_pred CceEEEEeeee--cCCCC-ceEEEEEEeCCCCCCCCCCCCCCC-ccccccchhhcccccCCCCCCCCCCCCCCCCccccc
Q 012024 201 RDYYIVVSSRF--TSTVL-TTTGILHYSNSAGPVSGPIPGGPT-VQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLIN 276 (472)
Q Consensus 201 g~y~i~~~~~~--~~~~~-~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 276 (472)
|+||....... ..+.. ...+.+..++... ...++|..-. .+....+. ++.+... +...+
T Consensus 137 GT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~-~~~~~p~~~~~~d~~l~l~-----D~~~~~~-------g~~~~---- 199 (471)
T PRK10883 137 ATCWYHANTPNRMAQHVYNGLAGMWLVEDEVS-KSLPIPNHYGVDDFPVIIQ-----DKRLDNF-------GTPEY---- 199 (471)
T ss_pred eeeEEccCCCCchhhhHhcCCeEEEEEeCCcc-cccCCcccCCCcceeEEee-----eeeeccC-------CCccc----
Confidence 99998765421 11211 1223333333221 1111111000 01100000 0000000 00000
Q ss_pred eeeEEEecccccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEEE
Q 012024 277 TTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQ 356 (472)
Q Consensus 277 ~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~ 356 (472)
.. ....... + ....|||+.. +.++++.+ +++|.|.
T Consensus 200 -~~----~~~~g~~-g-d~~lvNG~~~-------------------------------------p~~~v~~~-~~RlRli 234 (471)
T PRK10883 200 -NE----PGSGGFV-G-DTLLVNGVQS-------------------------------------PYVEVSRG-WVRLRLL 234 (471)
T ss_pred -cc----cccCCcc-C-CeeEECCccC-------------------------------------CeEEecCC-EEEEEEE
Confidence 00 0000000 1 1356676532 12455554 6899999
Q ss_pred cCCCC-CCCeee-cCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceeeEeee
Q 012024 357 NDEDI-IQSYHL-NGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRS 425 (472)
Q Consensus 357 N~~~~-~HP~Hl-HG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HC 425 (472)
|.+.. ..-|++ +||.|+||+..+|.+. .|...|.+.+.+++.+.|.+.+++.+.+.+++
T Consensus 235 Nas~~~~~~l~l~d~~~~~vIa~DGg~~~----------~P~~~~~l~l~pGeR~dvlVd~~~~~~~~l~~ 295 (471)
T PRK10883 235 NASNARRYQLQMSDGRPLHVIAGDQGFLP----------APVSVKQLSLAPGERREILVDMSNGDEVSITA 295 (471)
T ss_pred EccCCceEEEEEcCCCeEEEEEeCCCccc----------CCcEeCeEEECCCCeEEEEEECCCCceEEEEC
Confidence 99864 467888 8999999999877432 35667999999999999999887777888876
No 35
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.40 E-value=1.1e-06 Score=93.48 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=68.2
Q ss_pred EEeecCCcEEEEEEEcCC-CCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 342 VMGADYRAFIEIVFQNDE-DIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 342 ~~~~~~g~~ve~vi~N~~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
.+.++.|+.+++.+.|.. ...+.||+||... .+. .|.... |. -..-.|+||+....+|+++.+|.
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~--~~~---~~~DG~--------~~-vtq~~I~PG~s~~y~f~~~~~Gt 98 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQ--IGT---PWADGT--------AG-VTQCAINPGETFIYNFVVDRPGT 98 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCC--cCC---cccCCC--------Cc-cccCCcCCCCEEEEEEEcCCCEE
Confidence 367899999999999985 4679999999942 111 010000 00 11235789999999999999999
Q ss_pred eEeeecchhHHhcccEEEEEEecC
Q 012024 421 WNLRSESWARQYLGQQFYLRVYTA 444 (472)
Q Consensus 421 w~~HCHil~H~d~GMm~~~~V~~~ 444 (472)
|.||||...|...||...+.|.++
T Consensus 99 ~wyH~H~~~q~~~Gl~G~liV~~~ 122 (541)
T TIGR03388 99 YFYHGHYGMQRSAGLYGSLIVDVP 122 (541)
T ss_pred EEEEecchHHhhccceEEEEEecC
Confidence 999999999999999999998755
No 36
>PRK10965 multicopper oxidase; Provisional
Probab=98.40 E-value=2e-05 Score=83.35 Aligned_cols=227 Identities=17% Similarity=0.240 Sum_probs=132.7
Q ss_pred CeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCC
Q 012024 121 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPA 200 (472)
Q Consensus 121 d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~ 200 (472)
..+.+||+...|+|++++|+++++++.|--.. ...++.+|-.+. -+.||.+ ...|.||+.++.-++.++.+
T Consensus 66 ~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~-~ttiHwHGl~~~-~~~DG~p-------q~~I~PG~s~~Y~f~~~q~a 136 (523)
T PRK10965 66 ATWGYNGNLLGPAVRLQRGKAVTVDITNQLPE-ETTLHWHGLEVP-GEVDGGP-------QGIIAPGGKRTVTFTVDQPA 136 (523)
T ss_pred EEEEECCCCCCceEEEECCCEEEEEEEECCCC-CccEEcccccCC-CccCCCC-------CCCCCCCCEEEEEeccCCCC
Confidence 47999999877999999999999999998654 556666665433 2478864 23578999999999888778
Q ss_pred CceEEEEeeee--cCCCC-ceEEEEEEeCCCCCCCCCCCCCCC-ccccccchhhcccccCCCCCCCCCCCCCCCCccccc
Q 012024 201 RDYYIVVSSRF--TSTVL-TTTGILHYSNSAGPVSGPIPGGPT-VQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLIN 276 (472)
Q Consensus 201 g~y~i~~~~~~--~~~~~-~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 276 (472)
|.||-...... ..+.. ...+.+.+++... ....+|..-. .++...+. ++.+. +.+...+
T Consensus 137 GT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~-~~~~lp~~~~~~d~~lvlq-----D~~~~-------~~g~~~~---- 199 (523)
T PRK10965 137 ATCWFHPHQHGKTGRQVAMGLAGLVLIEDDES-LKLGLPKQWGVDDIPVILQ-----DKRFS-------ADGQIDY---- 199 (523)
T ss_pred ceEEEecCCCCCcHHHHhCcCeEEEEEcCccc-cccCCcccCCCceeeEEEE-----eeeeC-------CCCceec----
Confidence 99998776421 11211 2334444443321 1111221000 01100000 00010 0000000
Q ss_pred eeeEEEecccccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEEEEE
Q 012024 277 TTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQ 356 (472)
Q Consensus 277 ~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~vi~ 356 (472)
.... .....+.. .....|||+.+ |. +.++ +++++|.|.
T Consensus 200 -~~~~-~~~~~g~~--gd~~lVNG~~~-----p~--------------------------------~~v~-~~~~RlRli 237 (523)
T PRK10965 200 -QLDV-MTAAVGWF--GDTLLTNGAIY-----PQ--------------------------------HAAP-RGWLRLRLL 237 (523)
T ss_pred -cccc-cccccCcc--CCeEEECCccc-----ce--------------------------------eecC-CCEEEEEEE
Confidence 0000 00000000 12467787643 21 2233 569999999
Q ss_pred cCCCC-CCCeee-cCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceeeEeee
Q 012024 357 NDEDI-IQSYHL-NGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRS 425 (472)
Q Consensus 357 N~~~~-~HP~Hl-HG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HC 425 (472)
|.+.. ..-+.+ .|+.|+||+..++.. ..|...|.+.|.+++.+.|.+.++..|.+.+..
T Consensus 238 Nas~~r~~~l~~~dg~~~~vIa~DG~~l----------~~P~~v~~l~lapGeR~dvlv~~~~~~~~~l~~ 298 (523)
T PRK10965 238 NGCNARSLNLATSDGRPLYVIASDGGLL----------AEPVKVSELPILMGERFEVLVDTSDGKAFDLVT 298 (523)
T ss_pred eccCCceEEEEEcCCceEEEEEeCCCcc----------cCccEeCeEEECccceEEEEEEcCCCceEEEEE
Confidence 98743 223444 689999999987643 336777999999999999999988778776655
No 37
>PLN02191 L-ascorbate oxidase
Probab=98.36 E-value=2.3e-05 Score=83.78 Aligned_cols=249 Identities=13% Similarity=0.119 Sum_probs=136.9
Q ss_pred CCeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEE-EEeCCccccceeeeEEEEcCCCeEEEEEEeCC
Q 012024 120 PDGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKL-VEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQ 198 (472)
Q Consensus 120 ~d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~v-ia~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~ 198 (472)
-..++|||+...|+++++.|+++++++.|--......++.+|..+.= -..||..- +..-.|.||+.+...++++
T Consensus 42 ~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g----vtq~pI~PG~s~~Y~f~~~- 116 (574)
T PLN02191 42 GAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG----VTQCAINPGETFTYKFTVE- 116 (574)
T ss_pred eeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc----cccCCcCCCCeEEEEEECC-
Confidence 35899999987799999999999999999865445667776654321 12577543 2234689999999999997
Q ss_pred CCCceEEEEeeeecCCCCceEEEEEEeCCCCCCCCCCCCCCCccccccchhhcccccCCCCCCCCCCCCCCCCcccccee
Q 012024 199 PARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTT 278 (472)
Q Consensus 199 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 278 (472)
..|.||........ ......+.|..++...+. .+.....+....+. ++..... +..
T Consensus 117 ~~GT~wYHsH~~~q-~~~Gl~G~liV~~~~~~~---~~~~~d~e~~l~l~-----Dw~~~~~-----~~~---------- 172 (574)
T PLN02191 117 KPGTHFYHGHYGMQ-RSAGLYGSLIVDVAKGPK---ERLRYDGEFNLLLS-----DWWHESI-----PSQ---------- 172 (574)
T ss_pred CCeEEEEeeCcHHH-HhCCCEEEEEEccCCCCC---CCCCCCeeEEEeee-----ccccCCh-----HHH----------
Confidence 58999988764211 111233444443222111 01101111110010 0100000 000
Q ss_pred eEEEecccc-cccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccce-eEEeecCCcEEEEEEE
Q 012024 279 KTIRLSSSA-GQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDT-AVMGADYRAFIEIVFQ 356 (472)
Q Consensus 279 ~~~~~~~~~-~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~ve~vi~ 356 (472)
...+.... ..........|||+.-......... .....+..|. ...+ + .+. .+++++.|+++.|+|.
T Consensus 173 -~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~--~~~~~~~~~~-----~~~n-~--~~~p~~~~v~~G~~yRlRiI 241 (574)
T PLN02191 173 -ELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQF--SNGTELPMCT-----FKEG-D--QCAPQTLRVEPNKTYRIRLA 241 (574)
T ss_pred -HHhhccCCCCcCCCCCceEECCCCCCCCcccccc--cCCcccccce-----eccC-C--CCCceEEEEcCCCEEEEEEE
Confidence 00000000 0000112345666531100000000 0000000000 0000 0 122 3689999999999999
Q ss_pred cCCCC-CCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecC-ce
Q 012024 357 NDEDI-IQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VG 419 (472)
Q Consensus 357 N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn-pG 419 (472)
|.+.. .+-|+|.||+|.|++..+.. ..|..-|++.|.+|+.+.|.++++. +|
T Consensus 242 Na~~~~~~~~~idgH~~tVIa~DG~~-----------v~P~~v~~l~i~~GqRydVlV~a~~~~~ 295 (574)
T PLN02191 242 STTALASLNLAVQGHKLVVVEADGNY-----------ITPFTTDDIDIYSGESYSVLLTTDQDPS 295 (574)
T ss_pred ecCCceeEEEEECCCeEEEEEcCCee-----------ccceEeeeEEEcCCCeEEEEEECCCCCC
Confidence 98754 58999999999999997642 2367789999999999999999976 44
No 38
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.16 E-value=6e-06 Score=73.58 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=77.7
Q ss_pred eeEEeecCCcEEEEEEEcCCCC-CCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecC-
Q 012024 340 TAVMGADYRAFIEIVFQNDEDI-IQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN- 417 (472)
Q Consensus 340 ~~~~~~~~g~~ve~vi~N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn- 417 (472)
..++.++.|+++.|.|.|.+.. .+.|++.||+|+|++..+.. ..|...|++.|.+|+.+.|.++++.
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~-----------v~p~~~~~l~l~~G~R~dvlv~~~~~ 127 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVP-----------VEPYKVDTLVLAPGQRYDVLVTADQP 127 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEE-----------EEEEEESBEEE-TTEEEEEEEEECSC
T ss_pred cceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeecccc-----------ccccccceEEeeCCeEEEEEEEeCCC
Confidence 3568899999999999998864 69999999999999997542 2277889999999999999999987
Q ss_pred ceeeEeee----cchhHHhcccEEEEEEe
Q 012024 418 VGMWNLRS----ESWARQYLGQQFYLRVY 442 (472)
Q Consensus 418 pG~w~~HC----Hil~H~d~GMm~~~~V~ 442 (472)
+|.|.++| +...+...|+...+.+.
T Consensus 128 ~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 128 PGNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp SSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 99999999 66778888988887654
No 39
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.11 E-value=3.5e-05 Score=66.79 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=69.8
Q ss_pred CCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccc-----------cceeeeEEEEcCCCeEEEEEEeCC
Q 012024 130 SGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHT-----------LQTTYSSLDVHVGQSYSVLVTADQ 198 (472)
Q Consensus 130 ~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~-----------~p~~~~~l~l~~G~R~dv~v~~~~ 198 (472)
....+.++.|++++|+|+|.+.. .+.|+++|+.|+|++.++... .|...|++.+.+|++..+.++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~- 109 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD- 109 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-
T ss_pred CcceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-
Confidence 34689999999999999997776 999999999999999999884 57778999999999999999998
Q ss_pred CCCceEEEEee
Q 012024 199 PARDYYIVVSS 209 (472)
Q Consensus 199 ~~g~y~i~~~~ 209 (472)
.+|.|.+.+..
T Consensus 110 ~~G~w~~HCHi 120 (138)
T PF07731_consen 110 NPGPWLFHCHI 120 (138)
T ss_dssp STEEEEEEESS
T ss_pred cceEEEEEEch
Confidence 78998887754
No 40
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.09 E-value=2e-05 Score=69.03 Aligned_cols=88 Identities=8% Similarity=-0.037 Sum_probs=58.0
Q ss_pred eEEeecCCcEEEEEEEcCCC-CCCCeeecCCce--EEEEeecCCCCCCCCCCCCcCCCCccceEEeCC---C--CEEEEE
Q 012024 341 AVMGADYRAFIEIVFQNDED-IIQSYHLNGYQF--WVVGMDGGQWTSASRNQYNLRDAVARVTVQVYP---K--SWSAIY 412 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~-~~HP~HlHG~~F--~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~---~--g~~~ir 412 (472)
+.+.++.|+.|++++.|.+. ..|.|-||.+.- .......|. |..-..-.+|+ + ++..+.
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~-------------~~~~~~~i~p~~~~g~~~~~~~t 118 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGL-------------GFVAGTGFLPPPKSGKFGYTDFT 118 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCC-------------CccccCcccCCCCCCccceeEEE
Confidence 34788999999999999865 567766663221 111000000 11111122222 2 246888
Q ss_pred EEecCceeeEeeecchhHHhcccEEEEEE
Q 012024 413 IALDNVGMWNLRSESWARQYLGQQFYLRV 441 (472)
Q Consensus 413 f~adnpG~w~~HCHil~H~d~GMm~~~~V 441 (472)
|+++.+|.+.||||+..|...||-..+.|
T Consensus 119 f~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 119 YHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred EECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 99899999999999999999999999876
No 41
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.01 E-value=0.00066 Score=71.87 Aligned_cols=228 Identities=17% Similarity=0.216 Sum_probs=139.3
Q ss_pred CeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCce-eEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCC
Q 012024 121 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHK-MKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQP 199 (472)
Q Consensus 121 d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~-~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~ 199 (472)
..++|||+...|.|.++.|+++.++++|-.. ..+.++.+|.. ..---.||.++ ..=.|.|||.|---++.++.
T Consensus 48 ~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~Pg~~~tY~F~v~~q 121 (563)
T KOG1263|consen 48 QVITINGQFPGPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQPGENFTYRFTVKDQ 121 (563)
T ss_pred eeEeecCCCCCCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCcc-----ccCCcCCCCeEEEEEEeCCc
Confidence 4799999987899999999999999999955 57777777753 22334599444 33457899999999999877
Q ss_pred CCceEEEEeeeecCCCCceEEEEEEeCCCCCCCCCCCCCCCccccccch------hhcccccCCCCCCCCCCCCCCCCcc
Q 012024 200 ARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLN------QARSIRSNLTASGPRPNPQGSYHYG 273 (472)
Q Consensus 200 ~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~------~~~~~~~~l~~~~~~~~p~~~~~~~ 273 (472)
.|+||-.++....- .....+-|......... -+.+ .|..+....+. ..+.+...+...
T Consensus 122 ~GT~~yh~h~~~~R-a~G~~G~liI~~~~~~p-~pf~-~pd~E~~ill~dW~~~~~~~~l~~~~~~~------------- 185 (563)
T KOG1263|consen 122 IGTLWYHSHVSWQR-ATGVFGALIINPRPGLP-VPFP-KPDKEFTILLGDWYKNLNHKNLKNFLDRT------------- 185 (563)
T ss_pred ceeEEEeecccccc-ccCceeEEEEcCCccCC-CCCC-CCCceeEEEeEeeccccCHHHHHHhhccC-------------
Confidence 89988776553211 11134444433222100 1111 12222211110 000000000000
Q ss_pred ccceeeEEEecccccccCCeEeEEEcCeeccCCCCccccccccccCceeecCCCCCCCCCCCcccceeEEeecCCcEEEE
Q 012024 274 LINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEI 353 (472)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~ 353 (472)
...........|||++. ....|...++++.|+++.|
T Consensus 186 -------------~~~p~~~D~~~iNg~~g-------------------------------~~~~~~~~l~v~pGktY~l 221 (563)
T KOG1263|consen 186 -------------GALPNPSDGVLINGRSG-------------------------------FLYNCTPTLTVEPGKTYRL 221 (563)
T ss_pred -------------CCCCCCCCceEECCCCC-------------------------------cccCceeEEEEcCCCEEEE
Confidence 00000012345666541 1112466788999999999
Q ss_pred EEEcCCC--CCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecC-ce-eeEeeec
Q 012024 354 VFQNDED--IIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VG-MWNLRSE 426 (472)
Q Consensus 354 vi~N~~~--~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn-pG-~w~~HCH 426 (472)
+|.|.+. ..+ |.+=+|.+.|++..+- ...|.--|++.|-+|+...+...+|. ++ .|+-=|=
T Consensus 222 RiiN~g~~~~l~-F~I~~H~ltvVe~Dg~-----------y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 222 RIINAGLNTSLN-FSIANHQLTVVEVDGA-----------YTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASP 286 (563)
T ss_pred EEEccccccceE-EEECCeEEEEEEecce-----------EEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEe
Confidence 9999874 335 9999999999998652 12256679999999999999999976 55 3554444
No 42
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.72 E-value=0.00015 Score=59.17 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=57.9
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
..+.++.|++|+|+ |.+...|-+.++...+..-.. ........+++.+.||....+.|.. +|.
T Consensus 17 ~~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~pG~t~~~tF~~--~G~ 79 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNKGGPHNVVFDEDAVPAGVK-------------ELAKSLSHKDLLNSPGESYEVTFST--PGT 79 (99)
T ss_pred CEEEECCCCEEEEE--ECCCCCceEEECCCCCccchh-------------hhcccccccccccCCCCEEEEEeCC--CEE
Confidence 45789999999887 666677888775432211100 0000123467888899988887665 999
Q ss_pred eEeeecchhHHhcccEEEEEE
Q 012024 421 WNLRSESWARQYLGQQFYLRV 441 (472)
Q Consensus 421 w~~HCHil~H~d~GMm~~~~V 441 (472)
|.|||- .|...||...+.|
T Consensus 80 y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 80 YTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred EEEEcC--CccccCCEEEEEE
Confidence 999998 5999999999987
No 43
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.48 E-value=0.00052 Score=58.41 Aligned_cols=59 Identities=10% Similarity=0.257 Sum_probs=50.0
Q ss_pred EEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceee
Q 012024 342 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 421 (472)
Q Consensus 342 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w 421 (472)
.++++.|+.|+|++.|.+..+|.|-++++. -...+++++...++|.++.||.|
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~g---------------------------is~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSIDAYG---------------------------ISEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEECCCC---------------------------cceEECCCCeEEEEEECCCCEEE
Confidence 478999999999999999888887776541 13456789999999999999999
Q ss_pred Eeeecc
Q 012024 422 NLRSES 427 (472)
Q Consensus 422 ~~HCHi 427 (472)
.|||-.
T Consensus 115 ~y~C~~ 120 (135)
T TIGR03096 115 TIWCQL 120 (135)
T ss_pred EEeCCC
Confidence 999988
No 44
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.37 E-value=0.0038 Score=65.30 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=70.5
Q ss_pred CeEEECCCCC---CceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccc---cceeeeEEEEcCCCeEEEEE
Q 012024 121 DGILINGRGS---GAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHT---LQTTYSSLDVHVGQSYSVLV 194 (472)
Q Consensus 121 d~~liNG~~~---~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~---~p~~~~~l~l~~G~R~dv~v 194 (472)
..+.+||+.- ...+.++.|+++||++.|-+. -.+.|+++|+.|.|++.| ... .+...|++.+.+|+|..+.+
T Consensus 343 ~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~~~v~~ 420 (451)
T COG2132 343 YVWAINGKAFDDNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGERLLVRF 420 (451)
T ss_pred ccccccCccCCCCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCeEEEEEE
Confidence 4578888752 356789999999999999998 689999999999999999 322 34567999999999999999
Q ss_pred EeCCCCCceEEEEee
Q 012024 195 TADQPARDYYIVVSS 209 (472)
Q Consensus 195 ~~~~~~g~y~i~~~~ 209 (472)
+++ .+|.|.+.+..
T Consensus 421 ~a~-~~g~~~~HCH~ 434 (451)
T COG2132 421 DAD-YPGPWMFHCHI 434 (451)
T ss_pred eCC-CCCceEEeccc
Confidence 998 56777776543
No 45
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.93 E-value=0.0027 Score=52.12 Aligned_cols=62 Identities=6% Similarity=0.131 Sum_probs=43.6
Q ss_pred EEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceee
Q 012024 342 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 421 (472)
Q Consensus 342 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w 421 (472)
.++++.|+.+.+++.|.+...|-|.+-+ ..-...+++|+...+.|.++.||.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~---------------------------~~~~~~l~~g~~~~~~f~~~~~G~y 88 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPD---------------------------LGISKVLPPGETATVTFTPLKPGEY 88 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGG---------------------------GTEEEEE-TT-EEEEEEEE-S-EEE
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECC---------------------------CceEEEECCCCEEEEEEcCCCCEEE
Confidence 5788999999999999987776666543 1123778889999999999999999
Q ss_pred EeeecchhHHh
Q 012024 422 NLRSESWARQY 432 (472)
Q Consensus 422 ~~HCHil~H~d 432 (472)
-|+|-+ |..
T Consensus 89 ~~~C~~--~~~ 97 (104)
T PF13473_consen 89 EFYCTM--HPN 97 (104)
T ss_dssp EEB-SS--S-T
T ss_pred EEEcCC--CCc
Confidence 999997 554
No 46
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=96.84 E-value=0.0013 Score=53.48 Aligned_cols=37 Identities=22% Similarity=0.485 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEe
Q 012024 35 PIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRIL 76 (472)
Q Consensus 35 ~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 76 (472)
.+.||+++++.|. .+|+|+|||- .+...||.|.|+|+
T Consensus 63 ~~~pG~t~~~tF~---~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 63 LNSPGESYEVTFS---TPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred ccCCCCEEEEEeC---CCEEEEEEcC--CccccCCEEEEEEC
Confidence 3689999999886 3999999997 56677999999985
No 47
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.79 E-value=0.0019 Score=52.52 Aligned_cols=36 Identities=25% Similarity=0.591 Sum_probs=31.6
Q ss_pred CCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEe
Q 012024 36 IPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRIL 76 (472)
Q Consensus 36 i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 76 (472)
+.||+++++.|+ .+|+|.|+|- - +...||.|.|+|+
T Consensus 64 ~~~G~~~~~tF~---~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 64 LAPGETYSVTFT---KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp BSTTEEEEEEEE---SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred cCCCCEEEEEeC---CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 679999999997 6999999997 3 6778999999995
No 48
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.35 E-value=0.014 Score=49.87 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=54.6
Q ss_pred EECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCce
Q 012024 124 LINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDY 203 (472)
Q Consensus 124 liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y 203 (472)
-.||+.+++.++|++|++++|++.|.+. ..+.+.++++. -...|.||++..+-+.++ .+|.|
T Consensus 53 a~n~~~~P~~I~VkaGD~Vtl~vtN~d~-~~H~f~i~~~g----------------is~~I~pGet~TitF~ad-KpG~Y 114 (135)
T TIGR03096 53 AFNVLNEPEALVVKKGTPVKVTVENKSP-ISEGFSIDAYG----------------ISEVIKAGETKTISFKAD-KAGAF 114 (135)
T ss_pred eeeeEEcCCEEEECCCCEEEEEEEeCCC-CccceEECCCC----------------cceEECCCCeEEEEEECC-CCEEE
Confidence 5688888899999999999999999887 36666666642 156789999999999998 58999
Q ss_pred EEEEe
Q 012024 204 YIVVS 208 (472)
Q Consensus 204 ~i~~~ 208 (472)
+....
T Consensus 115 ~y~C~ 119 (135)
T TIGR03096 115 TIWCQ 119 (135)
T ss_pred EEeCC
Confidence 97653
No 49
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.27 E-value=0.03 Score=45.45 Aligned_cols=83 Identities=7% Similarity=0.020 Sum_probs=54.5
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
..+.++.|++|.|+.. +...|.+.+ .. +.+..... .+.. +..-.+..+.+|....+.|. .+|.
T Consensus 17 ~~i~V~~G~tV~~~n~--~~~~Hnv~~-------~~---~~~~~~~~--~~~~-~~~~~~~~~~~G~~~~~tF~--~~G~ 79 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNN--DSMPHNVVF-------VA---DGMPAGAD--SDYV-PPGDSSPLLAPGETYSVTFT--KPGT 79 (99)
T ss_dssp SEEEEETTEEEEEEEE--SSSSBEEEE-------ET---TSSHTTGG--HCHH-STTCEEEEBSTTEEEEEEEE--SSEE
T ss_pred CEEEECCCCEEEEEEC--CCCCceEEE-------ec---cccccccc--cccc-CccccceecCCCCEEEEEeC--CCeE
Confidence 4578999999998766 445676654 21 11100000 0000 11115667888888777776 9999
Q ss_pred eEeeecchhHHhcccEEEEEEe
Q 012024 421 WNLRSESWARQYLGQQFYLRVY 442 (472)
Q Consensus 421 w~~HCHil~H~d~GMm~~~~V~ 442 (472)
|.|+|- - |...||-..+.|.
T Consensus 80 y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 80 YEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEET-T-TGGTTSEEEEEEE
T ss_pred EEEEcC-C-CcccCCEEEEEEC
Confidence 999999 4 9999999999873
No 50
>PRK02710 plastocyanin; Provisional
Probab=96.05 E-value=0.03 Score=47.13 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=49.8
Q ss_pred EEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceee
Q 012024 342 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 421 (472)
Q Consensus 342 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w 421 (472)
.+.++.|++|+|+ |.+...|-+.+.+.. .+ ..+| ..+.++....+.|.. ||.|
T Consensus 48 ~i~v~~Gd~V~~~--N~~~~~H~v~~~~~~---------~~-------------~~~~-~~~~pg~t~~~tF~~--~G~y 100 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNKLAPHNAVFDGAK---------EL-------------SHKD-LAFAPGESWEETFSE--AGTY 100 (119)
T ss_pred EEEEcCCCEEEEE--ECCCCCceEEecCCc---------cc-------------cccc-cccCCCCEEEEEecC--CEEE
Confidence 3678999999885 666678887653211 00 0112 346677777766665 9999
Q ss_pred EeeecchhHHhcccEEEEEE
Q 012024 422 NLRSESWARQYLGQQFYLRV 441 (472)
Q Consensus 422 ~~HCHil~H~d~GMm~~~~V 441 (472)
.|+|= .|...||-..+.|
T Consensus 101 ~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 101 TYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred EEEcC--CCccCCcEEEEEE
Confidence 99998 4999999999887
No 51
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.94 E-value=0.029 Score=59.68 Aligned_cols=75 Identities=12% Similarity=0.227 Sum_probs=55.3
Q ss_pred eEEeecCCcEEEEEEEcCC---CCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecC
Q 012024 341 AVMGADYRAFIEIVFQNDE---DIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN 417 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn 417 (472)
..+.++.|+.|.+.|.|.+ +..|-|-+-++. --+.+.|+....+.|+++.
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~n---------------------------I~~dv~PG~t~svtF~adk 607 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYG---------------------------VNMEVAPQATASVTFTADK 607 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceeecccC---------------------------ccEEEcCCceEEEEEEcCC
Confidence 3467889999999999974 456777663321 1235567899999999999
Q ss_pred ceeeEeeecchhHH-hcccEEEEEEe
Q 012024 418 VGMWNLRSESWARQ-YLGQQFYLRVY 442 (472)
Q Consensus 418 pG~w~~HCHil~H~-d~GMm~~~~V~ 442 (472)
||.|.+||...-|. |.+|...+.|.
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVe 633 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVE 633 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEE
Confidence 99999999884433 34777777764
No 52
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.73 E-value=0.056 Score=45.21 Aligned_cols=76 Identities=11% Similarity=0.104 Sum_probs=49.0
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
..+.++.|++|.|+..+. .|- |....+. . +.. -+.+.-.++.... +.++.+|.
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hn---------v~~~~~~-~-p~g-----------~~~~~s~~g~~~~--~tF~~~G~ 67 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHN---------VETIKGM-I-PEG-----------AEAFKSKINEEYT--VTVTEEGV 67 (116)
T ss_pred CEEEECCCCEEEEEECCC---Cee---------EEEccCC-C-cCC-----------cccccCCCCCEEE--EEeCCCEE
Confidence 457899999999998874 231 2221110 0 000 0111112455444 55578999
Q ss_pred eEeeecchhHHhcccEEEEEEecCC
Q 012024 421 WNLRSESWARQYLGQQFYLRVYTAS 445 (472)
Q Consensus 421 w~~HCHil~H~d~GMm~~~~V~~~~ 445 (472)
+-|+|=. |...||-..+.|.++.
T Consensus 68 Y~Y~C~p--H~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 68 YGVKCTP--HYGMGMVALIQVGDPP 90 (116)
T ss_pred EEEEcCC--CccCCCEEEEEECCCC
Confidence 9999996 9999999999998864
No 53
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=95.25 E-value=0.14 Score=40.01 Aligned_cols=71 Identities=8% Similarity=0.058 Sum_probs=45.6
Q ss_pred EEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceee
Q 012024 342 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 421 (472)
Q Consensus 342 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w 421 (472)
.+.++.|+.|.| .|.+...|-.+.....+ +.. .+. ...+.++... ++.++.||.|
T Consensus 12 ~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~-------------~~~-~~~~~~g~~~--~~tf~~~G~y 66 (83)
T TIGR02657 12 ELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEA-------------ALK-GPMMKKEQAY--SLTFTEAGTY 66 (83)
T ss_pred EEEECCCCEEEE--EECCCCCccEEecCCCC-------ccc-------------ccc-ccccCCCCEE--EEECCCCEEE
Confidence 478899999988 46666788887653221 000 011 1123455544 4566889999
Q ss_pred EeeecchhHHhcccEEEEEE
Q 012024 422 NLRSESWARQYLGQQFYLRV 441 (472)
Q Consensus 422 ~~HCHil~H~d~GMm~~~~V 441 (472)
.|||=+ |. .|-..+.|
T Consensus 67 ~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 67 DYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred EEEcCC--CC--CCeEEEEE
Confidence 999998 55 57777766
No 54
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=95.18 E-value=0.058 Score=44.17 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=43.6
Q ss_pred CCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEE
Q 012024 126 NGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYI 205 (472)
Q Consensus 126 NG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i 205 (472)
|++..+..+++++|+.++|.+.|.+... +.|.+++. -....|.||+...+.+... .+|.|.+
T Consensus 29 ~~~f~P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~~----------------~~~~~l~~g~~~~~~f~~~-~~G~y~~ 90 (104)
T PF13473_consen 29 DFGFSPSTITVKAGQPVTLTFTNNDSRP-HEFVIPDL----------------GISKVLPPGETATVTFTPL-KPGEYEF 90 (104)
T ss_dssp -EEEES-EEEEETTCEEEEEEEE-SSS--EEEEEGGG----------------TEEEEE-TT-EEEEEEEE--S-EEEEE
T ss_pred CCeEecCEEEEcCCCeEEEEEEECCCCc-EEEEECCC----------------ceEEEECCCCEEEEEEcCC-CCEEEEE
Confidence 4454678999999999999999998763 66666551 1236788999999999776 6899987
Q ss_pred EEe
Q 012024 206 VVS 208 (472)
Q Consensus 206 ~~~ 208 (472)
...
T Consensus 91 ~C~ 93 (104)
T PF13473_consen 91 YCT 93 (104)
T ss_dssp B-S
T ss_pred EcC
Confidence 654
No 55
>PRK02710 plastocyanin; Provisional
Probab=94.76 E-value=0.08 Score=44.57 Aligned_cols=37 Identities=24% Similarity=0.537 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEe
Q 012024 35 PIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRIL 76 (472)
Q Consensus 35 ~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 76 (472)
.+.||++++|.|.. +|+|-|+|= .+...||.|.|+|+
T Consensus 83 ~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 83 AFAPGESWEETFSE---AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred ccCCCCEEEEEecC---CEEEEEEcC--CCccCCcEEEEEEC
Confidence 47899999999964 899999996 44557999999984
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=93.79 E-value=0.45 Score=39.70 Aligned_cols=72 Identities=11% Similarity=0.024 Sum_probs=47.2
Q ss_pred EEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceee
Q 012024 342 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 421 (472)
Q Consensus 342 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w 421 (472)
.++++.|++|.|+-++ +...|-. .+.+.+.|+. ......+++...+.| +.||.|
T Consensus 43 ~ltV~~GdTVtw~~~~-d~~~HnV---------~s~~~~~f~s--------------~~~~~~~G~t~s~Tf--~~~G~Y 96 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTG-EGGGHNV---------VSDGDGDLDE--------------SERVSEEGTTYEHTF--EEPGIY 96 (115)
T ss_pred EEEECCCCEEEEEECC-CCCCEEE---------EECCCCCccc--------------cccccCCCCEEEEEe--cCCcEE
Confidence 4788999999997543 2244543 2333233321 111234566555555 789999
Q ss_pred EeeecchhHHhcccEEEEEE
Q 012024 422 NLRSESWARQYLGQQFYLRV 441 (472)
Q Consensus 422 ~~HCHil~H~d~GMm~~~~V 441 (472)
.|+|=. |..+||-..+.|
T Consensus 97 ~Y~C~p--H~~~gM~G~I~V 114 (115)
T TIGR03102 97 LYVCVP--HEALGMKGAVVV 114 (115)
T ss_pred EEEccC--CCCCCCEEEEEE
Confidence 999997 999999999987
No 57
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=93.72 E-value=0.2 Score=39.10 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=27.6
Q ss_pred CCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEe
Q 012024 36 IPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRIL 76 (472)
Q Consensus 36 i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 76 (472)
+.||++|++.| +++|+|=|||=.+. +|.|-++|+
T Consensus 50 ~~~g~~~~~tf---~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 50 MKKEQAYSLTF---TEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred cCCCCEEEEEC---CCCEEEEEEcCCCC----CCeEEEEEC
Confidence 57888888777 46999999997764 599999985
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.96 E-value=0.13 Score=54.73 Aligned_cols=42 Identities=12% Similarity=0.269 Sum_probs=34.0
Q ss_pred CCCCCeEEEEEEeCCceeeeEEecccc-hhhhcCceeEEEEeCC
Q 012024 36 IPPGKNFTYILQVKDQIGSFYYFPSLA-FHKAAGGFGGIRILSR 78 (472)
Q Consensus 36 i~pG~~~~Y~~~~~~~~Gt~wYH~H~~-~q~~~Gl~G~liV~~~ 78 (472)
+.||+..+..|++ +++|+|||||..- ...-.+|.|-|+|+++
T Consensus 593 v~PG~t~svtF~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 593 VAPQATASVTFTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EcCCceEEEEEEc-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 7799999999998 6899999999852 1112389999999863
No 59
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=92.79 E-value=0.49 Score=43.72 Aligned_cols=77 Identities=10% Similarity=0.173 Sum_probs=55.9
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.|++.+++.+ ..|.|.+ -+-+ --..+-||....+.|.++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~D-V~Hsf~i-------p~~~--------------------~k~da~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD-VIHSFWV-------PELG--------------------GKIDAIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc-hhhcccc-------cccC--------------------ceEEecCCcEEEEEEEeCCCEE
Confidence 4578899999999999866 4455544 2221 1233446888899999999999
Q ss_pred eEeeecchhHH-hcccEEEEEEecCC
Q 012024 421 WNLRSESWARQ-YLGQQFYLRVYTAS 445 (472)
Q Consensus 421 w~~HCHil~H~-d~GMm~~~~V~~~~ 445 (472)
+...|--.-.. |..|...++|.+++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~ 194 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVERE 194 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHH
Confidence 99999984433 47788888887653
No 60
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=92.31 E-value=0.23 Score=44.98 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=38.3
Q ss_pred CCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCC
Q 012024 35 PIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRP 79 (472)
Q Consensus 35 ~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 79 (472)
.|.+|++..-.|... ++|+|||=|-...+...||++-|+|.+.-
T Consensus 146 GI~~G~s~~~~~~~l-~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 146 GISSGQSASGVYNDL-PAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred CccCCceeeEEEccC-CCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 588999998777543 69999999999999999999999998754
No 61
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=91.84 E-value=1.5 Score=36.83 Aligned_cols=73 Identities=8% Similarity=0.094 Sum_probs=52.3
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.|.+.+++.+ ..|-|.+-.... -+.+.||....+.|.++.||.
T Consensus 46 ~~l~lp~g~~v~~~ltS~D-ViHsf~ip~~~~---------------------------k~d~~PG~~~~~~~~~~~~G~ 97 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSED-VIHSFWIPELGI---------------------------KMDAIPGRTNSVTFTPDKPGT 97 (120)
T ss_dssp SEEEEETTSEEEEEEEESS-S-EEEEETTCTE---------------------------EEEEBTTCEEEEEEEESSSEE
T ss_pred ceecccccceEeEEEEcCC-ccccccccccCc---------------------------ccccccccceeeeeeeccCCc
Confidence 4578899999999999965 678877743322 233456888899999999999
Q ss_pred eEeeecchhHH-hcccEEEEEE
Q 012024 421 WNLRSESWARQ-YLGQQFYLRV 441 (472)
Q Consensus 421 w~~HCHil~H~-d~GMm~~~~V 441 (472)
+-..|..+=.. |..|...++|
T Consensus 98 y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 98 YYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp EEEEE-SSSSTTGGG-EEEEEE
T ss_pred EEEcCccccCcCcCCCeEEEEE
Confidence 99999986544 3455555655
No 62
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=91.66 E-value=0.27 Score=41.02 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=29.6
Q ss_pred CCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEe
Q 012024 36 IPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRIL 76 (472)
Q Consensus 36 i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 76 (472)
..+|++|+|.|. ++|+|=|+|=.| ...||.|.|+|+
T Consensus 80 ~~~G~t~s~Tf~---~~G~Y~Y~C~pH--~~~gM~G~I~V~ 115 (115)
T TIGR03102 80 SEEGTTYEHTFE---EPGIYLYVCVPH--EALGMKGAVVVE 115 (115)
T ss_pred cCCCCEEEEEec---CCcEEEEEccCC--CCCCCEEEEEEC
Confidence 578999999994 699999999644 456899999984
No 63
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=91.49 E-value=0.73 Score=40.06 Aligned_cols=93 Identities=10% Similarity=0.098 Sum_probs=65.8
Q ss_pred EeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceeeE
Q 012024 343 MGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWN 422 (472)
Q Consensus 343 ~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~ 422 (472)
+.++.|++++.++.|....-|=|=+= ++....+ .+.... ...-....-..++.+.||....+-+.+.++|.+-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~~--~~~~~~--~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNLE--HVTHMI--LADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccch--hHHHhh--hCCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 46788999999999988766755443 1111111 010000 0000112345899999999999999999999999
Q ss_pred eeecchhHHhcccEEEEEEe
Q 012024 423 LRSESWARQYLGQQFYLRVY 442 (472)
Q Consensus 423 ~HCHil~H~d~GMm~~~~V~ 442 (472)
|-|-|-.|-+.||-..+.|.
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999999873
No 64
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=90.62 E-value=0.61 Score=40.56 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=52.3
Q ss_pred CceEEEeCCcEEEEEEEEccCCCcEeEEEe--C----ceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceE
Q 012024 131 GAAFNVEQGKTYRLRISNVGLQNSLNFRIQ--N----HKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYY 204 (472)
Q Consensus 131 ~~~~~v~~g~~~rlR~in~~~~~~~~~~i~--~----h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~ 204 (472)
+..++++.|+++|+-+-|.+-. -+.|.++ + |.-..+.+| ..+--..+.+.|.||+..++++++. .+|+|.
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el-~hef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft-~~g~ye 137 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGEL-KHEFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFT-GAGKYE 137 (158)
T ss_pred CCcccccCCcEEeeeecCcccc-eEEEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEec-CCccEE
Confidence 4578999999999999998865 4444444 2 111222222 1222345789999999999999998 579999
Q ss_pred EEEee
Q 012024 205 IVVSS 209 (472)
Q Consensus 205 i~~~~ 209 (472)
++...
T Consensus 138 ~~C~i 142 (158)
T COG4454 138 FACNI 142 (158)
T ss_pred EEecC
Confidence 87643
No 65
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=90.12 E-value=0.55 Score=41.86 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=35.2
Q ss_pred CCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCC
Q 012024 36 IPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRP 79 (472)
Q Consensus 36 i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 79 (472)
|.+|++-.=.|.. -++|+|||=|-.-.+..+||+|-+||-+.-
T Consensus 146 i~~Gqs~sg~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 146 ISSGHSRSGWWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred ccccceeEEEecc-CCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 5677775555554 489999999999999999999999998754
No 66
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=89.83 E-value=0.61 Score=38.99 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=29.5
Q ss_pred CCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCC
Q 012024 37 PPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRP 79 (472)
Q Consensus 37 ~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 79 (472)
.+|++|++.| +.+|+|=|+|= .+...||.|.|+|.+++
T Consensus 53 ~~g~~~~~tF---~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 53 KINEEYTVTV---TEEGVYGVKCT--PHYGMGMVALIQVGDPP 90 (116)
T ss_pred CCCCEEEEEe---CCCEEEEEEcC--CCccCCCEEEEEECCCC
Confidence 3567666666 46999999997 45668999999998853
No 67
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=88.42 E-value=2.6 Score=35.78 Aligned_cols=74 Identities=9% Similarity=0.004 Sum_probs=47.0
Q ss_pred EEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceee
Q 012024 342 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 421 (472)
Q Consensus 342 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w 421 (472)
.++++.|++|+|+- .+...|-.+. .++. .|..-+++....+.....-| +.||.+
T Consensus 55 ~v~v~pGDTVtw~~--~d~~~Hnv~~---------~~~~-------------~~~g~~~~~~~~~~s~~~Tf--e~~G~Y 108 (128)
T COG3794 55 EVTVKPGDTVTWVN--TDSVGHNVTA---------VGGM-------------DPEGSGTLKAGINESFTHTF--ETPGEY 108 (128)
T ss_pred EEEECCCCEEEEEE--CCCCCceEEE---------eCCC-------------CcccccccccCCCcceEEEe--cccceE
Confidence 46789999999964 4434565433 2221 12222333333345554444 449999
Q ss_pred EeeecchhHHhcccEEEEEEec
Q 012024 422 NLRSESWARQYLGQQFYLRVYT 443 (472)
Q Consensus 422 ~~HCHil~H~d~GMm~~~~V~~ 443 (472)
.|.|=. |..+||-..+.|.+
T Consensus 109 ~Y~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 109 TYYCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred EEEecc--CCCCCcEEEEEeCC
Confidence 999999 99999999988753
No 68
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=88.30 E-value=1.8 Score=41.17 Aligned_cols=77 Identities=6% Similarity=0.086 Sum_probs=55.5
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.|++.++..+ ..|-|.+ -+ .+--+.+-||-...+.+.++.+|.
T Consensus 137 n~l~lPv~~~V~f~ltS~D-ViHsF~I-------P~--------------------l~~k~d~iPG~~~~~~~~~~~~G~ 188 (247)
T COG1622 137 NELVLPVGRPVRFKLTSAD-VIHSFWI-------PQ--------------------LGGKIDAIPGMTTELWLTANKPGT 188 (247)
T ss_pred ceEEEeCCCeEEEEEEech-hceeEEe-------cC--------------------CCceeeecCCceEEEEEecCCCeE
Confidence 4578899999999999875 5566555 22 233344456788889999999999
Q ss_pred eEeeecchhHHhcccEE-EEEEecCC
Q 012024 421 WNLRSESWARQYLGQQF-YLRVYTAS 445 (472)
Q Consensus 421 w~~HCHil~H~d~GMm~-~~~V~~~~ 445 (472)
|-.+|+.+--....+|. .+.|..++
T Consensus 189 Y~g~Cae~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 189 YRGICAEYCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred EEEEcHhhcCCCcccceEEEEEEcHH
Confidence 99999998766655554 45555443
No 69
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=85.15 E-value=1.2 Score=37.79 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=27.2
Q ss_pred CCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeC
Q 012024 37 PPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILS 77 (472)
Q Consensus 37 ~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~ 77 (472)
.+|++|++.|. .+|+|=|.|=.| ...||.|.|+|++
T Consensus 93 ~~~~s~~~Tfe---~~G~Y~Y~C~PH--~~~gM~G~IvV~~ 128 (128)
T COG3794 93 GINESFTHTFE---TPGEYTYYCTPH--PGMGMKGKIVVGE 128 (128)
T ss_pred CCCcceEEEec---ccceEEEEeccC--CCCCcEEEEEeCC
Confidence 34577777664 599999998543 4679999999974
No 70
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=85.10 E-value=3.1 Score=32.42 Aligned_cols=65 Identities=14% Similarity=0.260 Sum_probs=33.3
Q ss_pred EEEEEEEccCCCcEeEEEe-Cce--eEEEEeCCcccc--------ceeeeEEEEcCCCeEEEEEEeCCC---CCceEEEE
Q 012024 142 YRLRISNVGLQNSLNFRIQ-NHK--MKLVEVEGTHTL--------QTTYSSLDVHVGQSYSVLVTADQP---ARDYYIVV 207 (472)
Q Consensus 142 ~rlR~in~~~~~~~~~~i~-~h~--~~via~DG~~~~--------p~~~~~l~l~~G~R~dv~v~~~~~---~g~y~i~~ 207 (472)
..|.+.|.+.. .+.|.+. |++ +.|.-.+|..+- -+......|.|||...+-...+.. +|.|.+.+
T Consensus 4 ~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 45666666654 4555542 333 333333455441 133578899999999999888763 68998764
No 71
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=83.36 E-value=17 Score=30.45 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=46.1
Q ss_pred CceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeee
Q 012024 131 GAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSR 210 (472)
Q Consensus 131 ~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~ 210 (472)
...+.++.|+.++|++-+... .+.|.+.+..++ +.+-||+.-.+-++++ .+|.|+++.+..
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DV--iHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~-~~G~y~~~C~e~ 105 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDV--IHSFWIPELGIK----------------MDAIPGRTNSVTFTPD-KPGTYYGQCAEY 105 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS---EEEEETTCTEE----------------EEEBTTCEEEEEEEES-SSEEEEEEE-SS
T ss_pred cceecccccceEeEEEEcCCc--cccccccccCcc----------------cccccccceeeeeeec-cCCcEEEcCccc
Confidence 358999999999999988655 566666554433 3456888888888887 689999998765
Q ss_pred ec
Q 012024 211 FT 212 (472)
Q Consensus 211 ~~ 212 (472)
.+
T Consensus 106 CG 107 (120)
T PF00116_consen 106 CG 107 (120)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 72
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=79.02 E-value=34 Score=28.36 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=12.9
Q ss_pred EEEEEEccCC-CcEeEEEeCce
Q 012024 143 RLRISNVGLQ-NSLNFRIQNHK 163 (472)
Q Consensus 143 rlR~in~~~~-~~~~~~i~~h~ 163 (472)
++|++|++.. ..+.+.+++..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 5777777754 55566665443
No 73
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=77.44 E-value=10 Score=35.80 Aligned_cols=78 Identities=9% Similarity=0.136 Sum_probs=55.4
Q ss_pred eeEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCce
Q 012024 340 TAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVG 419 (472)
Q Consensus 340 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG 419 (472)
.+.+.++.|+.|++.+++.+ -.|-|.+ -+-+ =-..+-||....+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D-ViHsf~i-------p~~~--------------------~k~d~~Pg~~~~~~~~~~~~g 190 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD-VIHSWTV-------PSLG--------------------VKVDAIPGRLNQLSFEPKRPG 190 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc-cccceec-------cccC--------------------ceeECCCCcceeEEEEeCCCE
Confidence 35678899999999999966 4555544 2222 112333677888899999999
Q ss_pred eeEeeecchhHH-hcccEEEEEEecCC
Q 012024 420 MWNLRSESWARQ-YLGQQFYLRVYTAS 445 (472)
Q Consensus 420 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 445 (472)
.+...|.-+-.. |..|-..++|..++
T Consensus 191 ~y~~~C~e~CG~~H~~M~~~v~v~~~~ 217 (228)
T MTH00140 191 VFYGQCSEICGANHSFMPIVVEAVPLE 217 (228)
T ss_pred EEEEECccccCcCcCCCeEEEEEECHH
Confidence 999999987655 55667777776543
No 74
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=76.91 E-value=11 Score=33.20 Aligned_cols=75 Identities=9% Similarity=0.135 Sum_probs=51.2
Q ss_pred EEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceee
Q 012024 342 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 421 (472)
Q Consensus 342 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w 421 (472)
.+.++.|+.|++.++..+ -.|.|.+- +.+ ...|. -||-...+.|.++.+|.+
T Consensus 74 ~LvLP~g~~Vr~~lTS~D-VIHSF~VP-------~lg-----------------vK~Da---vPGr~n~l~~~~~~~G~y 125 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATD-VIHSWSVP-------SLG-----------------IKADA---IPGRLHKINTFILREGVF 125 (162)
T ss_pred CEEEeCCCEEEEEEEeCc-cceeeecc-------ccC-----------------ceeec---cCCceEEEEEecCCCeEE
Confidence 467899999999998876 44666552 221 12233 366777888999999999
Q ss_pred EeeecchhHHh-cccEEEEEEecC
Q 012024 422 NLRSESWARQY-LGQQFYLRVYTA 444 (472)
Q Consensus 422 ~~HCHil~H~d-~GMm~~~~V~~~ 444 (472)
...|.-+--.. ..|-..++|+.+
T Consensus 126 ~gqCsElCG~gHs~M~~~V~vvs~ 149 (162)
T PTZ00047 126 YGQCSEMCGTLHGFMPIVVEAVSP 149 (162)
T ss_pred EEEcchhcCcCccCceEEEEEeCH
Confidence 99999765433 345555666544
No 75
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=74.84 E-value=23 Score=32.43 Aligned_cols=77 Identities=9% Similarity=0.181 Sum_probs=55.9
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.+++.+...+ -.|-|.+-. -+ ..+|.+ ||....+.|.++.||.
T Consensus 116 ~~l~lp~g~~v~~~ltS~D-ViHsf~vp~-------l~-----------------~k~d~~---PG~~~~~~~~~~~~G~ 167 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSD-VIHSFSVPD-------LN-----------------LKMDAI---PGRINHLFFCPDRHGV 167 (194)
T ss_pred ceEEEeCCCEEEeeeecCc-cccceeccc-------cC-----------------ceeecC---CCceEEEEEEcCCCEE
Confidence 3467899999999998866 556665532 11 123443 6788889999999999
Q ss_pred eEeeecchhHH-hcccEEEEEEecCC
Q 012024 421 WNLRSESWARQ-YLGQQFYLRVYTAS 445 (472)
Q Consensus 421 w~~HCHil~H~-d~GMm~~~~V~~~~ 445 (472)
+-.-|.-+--. |..|-..++|++++
T Consensus 168 y~g~C~e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 168 FVGYCSELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEEeehhhCcCcccCcEEEEEEcCC
Confidence 99999986655 56777778777653
No 76
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=74.66 E-value=11 Score=35.46 Aligned_cols=76 Identities=8% Similarity=0.196 Sum_probs=54.8
Q ss_pred EEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceee
Q 012024 342 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 421 (472)
Q Consensus 342 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w 421 (472)
.+.++.|+.|++.++..+ -.|.| +|-+-+ ..+|.+ ||-...+.|.+|.||.|
T Consensus 140 el~lP~g~pV~~~ltS~D-ViHSF-------~VP~l~-----------------~K~Dai---PG~~n~~~~~~~~~G~y 191 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNS-VMNSF-------FIPQLG-----------------SQIYAM---AGMQTKLHLIANEPGVY 191 (226)
T ss_pred eEEEECCCEEEEEEEECc-hhhhh-------hhhhcC-----------------CeeecC---CCceEEEEEEeCCCEEE
Confidence 467899999999999876 34544 444332 235555 57778899999999999
Q ss_pred EeeecchhHH-hcccEEEEEEecCC
Q 012024 422 NLRSESWARQ-YLGQQFYLRVYTAS 445 (472)
Q Consensus 422 ~~HCHil~H~-d~GMm~~~~V~~~~ 445 (472)
.-.|--+--. |..|...+.|+.++
T Consensus 192 ~g~CaE~CG~~Ha~M~~~V~v~~~~ 216 (226)
T TIGR01433 192 DGISANYSGPGFSGMKFKAIATDRA 216 (226)
T ss_pred EEEchhhcCcCccCCeEEEEEECHH
Confidence 9999875544 45677777776553
No 77
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=66.30 E-value=32 Score=25.41 Aligned_cols=65 Identities=28% Similarity=0.305 Sum_probs=37.5
Q ss_pred ceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEe
Q 012024 132 AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVS 208 (472)
Q Consensus 132 ~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~ 208 (472)
..|+++.|+++++.+-+.+. +..+.|...+|..+....-.. -..|..-.+.+.+. .+|+|.|++.
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 57899999998888766654 233667777765442211111 01122233334554 6799999874
No 78
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=65.65 E-value=21 Score=33.39 Aligned_cols=77 Identities=14% Similarity=0.300 Sum_probs=55.2
Q ss_pred EEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceee
Q 012024 342 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 421 (472)
Q Consensus 342 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w 421 (472)
.+.++.|+.|++.+++.+ -.|- |+|=+-+ ..+|.+ ||-...+.|.++.||.|
T Consensus 131 ~l~iP~g~~v~~~ltS~D-ViHs-------f~vP~l~-----------------~k~dai---PG~~~~~~~~~~~~G~y 182 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSAD-TMTS-------FWIPQLG-----------------GQKYAM---TGMTMNWYLQADQVGTY 182 (217)
T ss_pred cEEEECCCEEEEEEECCc-hhhh-------hhchhhC-----------------ceeecC---CCceEEEEEEeCCCEEE
Confidence 367899999999999876 3444 4443332 235555 68888899999999999
Q ss_pred EeeecchhHH-hcccEEEEEEecCCc
Q 012024 422 NLRSESWARQ-YLGQQFYLRVYTAST 446 (472)
Q Consensus 422 ~~HCHil~H~-d~GMm~~~~V~~~~~ 446 (472)
--.|=-+--. |.-|...++|+++++
T Consensus 183 ~g~Cae~CG~~Hs~M~~~v~v~~~~~ 208 (217)
T TIGR01432 183 RGRNANFNGEGFADQTFDVNAVSEKD 208 (217)
T ss_pred EEEehhhcCccccCCeEEEEEeCHHH
Confidence 9999765443 457777788776643
No 79
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=64.15 E-value=31 Score=32.76 Aligned_cols=77 Identities=6% Similarity=0.118 Sum_probs=55.1
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.|++.++..+ -.|-|.+- +-+ ..+|.+ ||-...+.|.++.||.
T Consensus 151 n~lvlP~~~~v~~~~tS~D-ViHsf~iP-------~lg-----------------vK~Dai---PG~~n~~~~~~~~~G~ 202 (240)
T MTH00023 151 NRLVVPINTHVRILVTGAD-VLHSFAVP-------SLG-----------------LKIDAV---PGRLNQTGFFIKRPGV 202 (240)
T ss_pred ceEEEecCCEEEEEEEcCC-cccceeec-------ccC-----------------ceeecC---CCcceeEEEEcCCCEE
Confidence 4578899999999999876 55666552 221 224443 5666788899999999
Q ss_pred eEeeecchhHH-hcccEEEEEEecCC
Q 012024 421 WNLRSESWARQ-YLGQQFYLRVYTAS 445 (472)
Q Consensus 421 w~~HCHil~H~-d~GMm~~~~V~~~~ 445 (472)
+.-.|.-+-.. |.-|-..++|++++
T Consensus 203 y~g~C~e~CG~~Hs~M~~~v~vv~~~ 228 (240)
T MTH00023 203 FYGQCSEICGANHSFMPIVIEAVSLD 228 (240)
T ss_pred EEEEchhhcCcCccCCeEEEEEECHH
Confidence 99999986655 45666667776653
No 80
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=63.88 E-value=27 Score=25.60 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=21.6
Q ss_pred eEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEE
Q 012024 133 AFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVE 168 (472)
Q Consensus 133 ~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via 168 (472)
++++.+|+..+||.-. ...|.+.+-.+||..
T Consensus 1 ~~~L~~g~~~~lr~~~-----~~~l~v~~G~vWlT~ 31 (63)
T PF11142_consen 1 TFELAPGETLSLRAAA-----GQRLRVESGRVWLTR 31 (63)
T ss_pred CEEeCCCceEEeEcCC-----CcEEEEccccEEEEC
Confidence 3677889998888443 334777777888754
No 81
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=63.42 E-value=53 Score=30.00 Aligned_cols=96 Identities=14% Similarity=-0.023 Sum_probs=56.5
Q ss_pred EEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCC-----CCCCC-CCCcCCCCccceEEeCCCCEEEEEEEe
Q 012024 342 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWT-----SASRN-QYNLRDAVARVTVQVYPKSWSAIYIAL 415 (472)
Q Consensus 342 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~-----~~~~~-~~n~~~p~~rDTv~vp~~g~~~irf~a 415 (472)
.+.++.|-.|.+++.|.+...|- |-|+..+..... .+... .+-...+.--..--+.+|.....-|..
T Consensus 87 ~i~VPAGw~V~i~f~N~~~l~Hn-------l~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~ 159 (196)
T PF06525_consen 87 TIYVPAGWNVQITFTNQESLPHN-------LVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYND 159 (196)
T ss_pred EEEEcCCCEEEEEEEcCCCCCee-------EEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEcc
Confidence 35679999999999999877775 445533321100 00000 000000100001112245555445555
Q ss_pred cCceeeEeeecchhHHhcccEEEEEEecC
Q 012024 416 DNVGMWNLRSESWARQYLGQQFYLRVYTA 444 (472)
Q Consensus 416 dnpG~w~~HCHil~H~d~GMm~~~~V~~~ 444 (472)
-.+|.|.+=|=+.-|...||=..+.|...
T Consensus 160 l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 160 LPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred CCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 56999999999999999999999987543
No 82
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=63.15 E-value=7.4 Score=30.28 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=32.2
Q ss_pred CcccccccCCeeEeccCCCC-----C------CCCCCCCCCccCCC----CCCCCeEEEEEEeCCc---eeeeEE
Q 012024 1 MSLTATSIRSAFANGNGIQN-----R------RNSFEDGVYGTTCP----IPPGKNFTYILQVKDQ---IGSFYY 57 (472)
Q Consensus 1 ~~~~n~l~~~tsiHwHG~~~-----~------~~~~~DGv~~tq~~----i~pG~~~~Y~~~~~~~---~Gt~wY 57 (472)
+.++|..+++.++.+.--.. . -=-|++|-..+|.. |.||++.+|++..+.. +|+|..
T Consensus 6 l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 6 LTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 35789999999998765411 1 01367887766543 9999999999999733 688864
No 83
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=62.30 E-value=64 Score=24.38 Aligned_cols=65 Identities=22% Similarity=0.342 Sum_probs=31.1
Q ss_pred EeCCcE--EEEEEEEccCCC--cEeEEEeCceeEEEEeCCccc--cceeeeEEEEcCCCeEEEEEEe--CC--CCCceEE
Q 012024 136 VEQGKT--YRLRISNVGLQN--SLNFRIQNHKMKLVEVEGTHT--LQTTYSSLDVHVGQSYSVLVTA--DQ--PARDYYI 205 (472)
Q Consensus 136 v~~g~~--~rlR~in~~~~~--~~~~~i~~h~~~via~DG~~~--~p~~~~~l~l~~G~R~dv~v~~--~~--~~g~y~i 205 (472)
|++|+. +++.+-|.+... .+.++++. -+|=.+ .+..+. .|.||+...+-++. +. .+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 356665 467788987542 34444432 233221 233333 78999877666655 32 4689999
Q ss_pred EEee
Q 012024 206 VVSS 209 (472)
Q Consensus 206 ~~~~ 209 (472)
.+..
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 84
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=62.12 E-value=64 Score=29.10 Aligned_cols=94 Identities=9% Similarity=-0.071 Sum_probs=54.8
Q ss_pred EEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecC-CCCCC-CC--CCCCc--CCCCccceEEeCCCCEEEEEEEe
Q 012024 342 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGG-QWTSA-SR--NQYNL--RDAVARVTVQVYPKSWSAIYIAL 415 (472)
Q Consensus 342 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g-~~~~~-~~--~~~n~--~~p~~rDTv~vp~~g~~~irf~a 415 (472)
.+-++.|-.|.+++.|.+..+|-+ -|+..+.. +..+. .. ...+. ..+.--..=-+..|.....-|..
T Consensus 86 tIyiPaGw~V~V~f~N~e~~pHnl-------~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~ 158 (195)
T TIGR03094 86 TIYLPAGWNVYVTFTNYESLPHNL-------KLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWND 158 (195)
T ss_pred EEEEeCCCEEEEEEEcCCCCCccE-------EEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEecc
Confidence 356799999999999999777654 33333211 00000 00 00000 00100011112234454555555
Q ss_pred cCceeeEeeecchhHHhcccEEEEEEe
Q 012024 416 DNVGMWNLRSESWARQYLGQQFYLRVY 442 (472)
Q Consensus 416 dnpG~w~~HCHil~H~d~GMm~~~~V~ 442 (472)
-.||.+.+=|-+.-|...||=..+.|-
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVS 185 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVS 185 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEe
Confidence 679999999999999999999888774
No 85
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=58.66 E-value=45 Score=31.38 Aligned_cols=76 Identities=7% Similarity=0.104 Sum_probs=53.5
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.|++.++..+ -.| .|+|-+-+ ...|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViH-------sf~ip~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSED-VLH-------SWAVPSLG-----------------LKTDAI---PGRLNQTTLMSTRPGL 191 (227)
T ss_pred ceEEecCCCEEEEEEEECc-ccc-------cccccccc-----------------cceecC---CCceEEEEEecCCcEE
Confidence 4677899999999999876 333 34443332 123433 6777788999999999
Q ss_pred eEeeecchhHH-hcccEEEEEEecC
Q 012024 421 WNLRSESWARQ-YLGQQFYLRVYTA 444 (472)
Q Consensus 421 w~~HCHil~H~-d~GMm~~~~V~~~ 444 (472)
+..-|.-+-.. |.-|-..++|..+
T Consensus 192 ~~g~Cse~CG~~H~~M~~~v~v~~~ 216 (227)
T MTH00098 192 YYGQCSEICGSNHSFMPIVLELVPL 216 (227)
T ss_pred EEEECccccCcCcCCceEEEEEeCH
Confidence 99999876655 4566666776654
No 86
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=58.37 E-value=68 Score=27.09 Aligned_cols=62 Identities=13% Similarity=0.248 Sum_probs=41.7
Q ss_pred eEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccc-------cceeeeEEEEcCCCeEEEEEEeCCC
Q 012024 133 AFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHT-------LQTTYSSLDVHVGQSYSVLVTADQP 199 (472)
Q Consensus 133 ~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~-------~p~~~~~l~l~~G~R~dv~v~~~~~ 199 (472)
.|++.....|+|++-.-+ ..+|.|||..+ |..++..- .+.....+.|..|++|+|-|...+.
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 466666678999988333 57788988764 55554332 3455678899999999999987543
No 87
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=57.79 E-value=34 Score=27.12 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=39.0
Q ss_pred EeCCcEEEEEEE--EccCCCcEeEEEeCce--eEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCC--CCceEEEEee
Q 012024 136 VEQGKTYRLRIS--NVGLQNSLNFRIQNHK--MKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQP--ARDYYIVVSS 209 (472)
Q Consensus 136 v~~g~~~rlR~i--n~~~~~~~~~~i~~h~--~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~--~g~y~i~~~~ 209 (472)
-+||+++.+|++ +... . .-...+.. ++|..-+|..+..... ........++.-+.+++. .|.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~-~--~~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-D--FKPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-T--CSCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-c--cccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 469999999998 6652 1 01122233 4555555544422111 134677888888888753 5899998865
No 88
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=57.52 E-value=50 Score=31.12 Aligned_cols=76 Identities=11% Similarity=0.107 Sum_probs=53.3
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.|++.+++.+ -.|-|.+ -+-+ ...| .-||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHsf~v-------P~~~-----------------~k~d---aiPG~~~~~~~~~~~~G~ 191 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD-VIHSWTV-------PSLG-----------------VKVD---AVPGRLNQIGFTITRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEeCC-ccccccc-------cccC-----------------ccee---cCCCceEEEEEEeCCCEE
Confidence 4567899999999999966 4454444 3322 1123 336777888899999999
Q ss_pred eEeeecchhHH-hcccEEEEEEecC
Q 012024 421 WNLRSESWARQ-YLGQQFYLRVYTA 444 (472)
Q Consensus 421 w~~HCHil~H~-d~GMm~~~~V~~~ 444 (472)
+..-|--+-.. |.-|-..++|+.+
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 192 FYGQCSEICGANHSFMPIVLEAVDT 216 (228)
T ss_pred EEEEChhhcCcCccCceeEEEEECH
Confidence 99999876655 4566666776654
No 89
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=57.17 E-value=71 Score=29.32 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=42.9
Q ss_pred ceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeeee
Q 012024 132 AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRF 211 (472)
Q Consensus 132 ~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~ 211 (472)
..+.++.|+.+||++-+.... +.|.+.+.. -.+..-||..-.+-++++ .+|.|..+.+..+
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV~--Hsf~ip~~~----------------~k~da~PG~~~~~~~~~~-~~G~y~~~c~e~c 177 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDVI--HSFWVPELG----------------GKIDAIPGQYNALWFNAD-EPGVYYGYCAELC 177 (201)
T ss_pred CEEEEEcCCEEEEEEEeCchh--hcccccccC----------------ceEEecCCcEEEEEEEeC-CCEEEEEEehhhC
Confidence 578899999999998775543 333332221 134466898888889888 6899999887644
Q ss_pred c
Q 012024 212 T 212 (472)
Q Consensus 212 ~ 212 (472)
+
T Consensus 178 G 178 (201)
T TIGR02866 178 G 178 (201)
T ss_pred C
Confidence 3
No 90
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=55.77 E-value=58 Score=30.73 Aligned_cols=77 Identities=8% Similarity=0.092 Sum_probs=53.2
Q ss_pred eeEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCce
Q 012024 340 TAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVG 419 (472)
Q Consensus 340 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG 419 (472)
.+.+.++.|+.+++.++..+ -.| .|+|-+-|. ..|.+ ||....+.+.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D-ViH-------sf~iP~lg~-----------------k~dai---PG~~~~~~~~~~~~G 190 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAED-VLH-------SWTVPALGV-----------------KMDAV---PGRLNQATFIISRPG 190 (230)
T ss_pred CCeEEEecCCEEEEEEEcCc-ccc-------cccccccCc-----------------eeEec---CCceEEEEEEeCCcE
Confidence 34567899999999999876 334 344433321 23333 677778888999999
Q ss_pred eeEeeecchhHH-hcccEEEEEEecC
Q 012024 420 MWNLRSESWARQ-YLGQQFYLRVYTA 444 (472)
Q Consensus 420 ~w~~HCHil~H~-d~GMm~~~~V~~~ 444 (472)
.+.--|.-+-.. |.-|-..++|..+
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~ 216 (230)
T MTH00185 191 LYYGQCSEICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEEEchhhcCcCcCCCeEEEEEECH
Confidence 999999986655 4556666766644
No 91
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=54.25 E-value=49 Score=31.19 Aligned_cols=76 Identities=8% Similarity=0.045 Sum_probs=55.0
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.|++.++..+ -. |.|+|-+-+. ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-Vi-------Hsf~ip~~~~-----------------k~da~---PG~~~~~~~~~~~~G~ 191 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED-VL-------HSWAVPALGV-----------------KMDAV---PGRLNQTAFIASRPGV 191 (230)
T ss_pred ceEEEecCcEEEEEEEeCc-cc-------cceeccccCC-----------------ccccC---CCceEEEEEEeCCceE
Confidence 4577899999999999876 23 4555555432 23433 6777888899999999
Q ss_pred eEeeecchhHH-hcccEEEEEEecC
Q 012024 421 WNLRSESWARQ-YLGQQFYLRVYTA 444 (472)
Q Consensus 421 w~~HCHil~H~-d~GMm~~~~V~~~ 444 (472)
+-..|.-+-.. |..|-..++|..+
T Consensus 192 ~~g~C~e~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 192 FYGQCSEICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEEChhhccccccCCcEEEEEECH
Confidence 99999876544 5677777777654
No 92
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=53.70 E-value=1e+02 Score=25.80 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=37.1
Q ss_pred eEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccc-cceeeeEEEEcCCCeEEEEEEeCCC
Q 012024 133 AFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHT-LQTTYSSLDVHVGQSYSVLVTADQP 199 (472)
Q Consensus 133 ~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~-~p~~~~~l~l~~G~R~dv~v~~~~~ 199 (472)
.|++.....|+|.+... ...+|.|+|.. ||..++..- .+.....+.|..|++|.|.|+..+.
T Consensus 51 ~i~~~~~G~y~f~~~~~---~~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~ 113 (136)
T smart00758 51 YLKPPEDGEYTFSITSD---DGARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEA 113 (136)
T ss_pred EEECCCCccEEEEEEcC---CcEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeC
Confidence 34555455789988433 34678888864 333333221 1233456888888888888877543
No 93
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=52.53 E-value=61 Score=30.54 Aligned_cols=76 Identities=9% Similarity=0.156 Sum_probs=53.1
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.+++.++..+ -.|-|.+- +-| ...|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHsf~iP-------~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD-VLHSWAVP-------SLG-----------------VKMDAV---PGRLNQTTFFISRTGL 191 (229)
T ss_pred ceEEEecCeEEEEEEEECC-cccccccc-------ccC-----------------ceeecC---CCceEEEEEEcCCCEE
Confidence 4578899999999998876 45655442 221 224444 6777788899999999
Q ss_pred eEeeecchhHHh-cccEEEEEEecC
Q 012024 421 WNLRSESWARQY-LGQQFYLRVYTA 444 (472)
Q Consensus 421 w~~HCHil~H~d-~GMm~~~~V~~~ 444 (472)
+..-|--+-... .-|-..++|..+
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~ 216 (229)
T MTH00038 192 FYGQCSEICGANHSFMPIVIESVPF 216 (229)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCH
Confidence 999998766553 445555666544
No 94
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=50.89 E-value=1.2e+02 Score=23.61 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=39.4
Q ss_pred EEeCCcEE--EEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEE-EEcCCCeEEEEEEeCC-CCCceEEEEee
Q 012024 135 NVEQGKTY--RLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSL-DVHVGQSYSVLVTADQ-PARDYYIVVSS 209 (472)
Q Consensus 135 ~v~~g~~~--rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l-~l~~G~R~dv~v~~~~-~~g~y~i~~~~ 209 (472)
.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.+|+...+-+.... .+|.|.|++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 44567665 467889887644333332 34555554 33445 7899999988887753 57888887654
No 95
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=49.58 E-value=1.7e+02 Score=25.27 Aligned_cols=84 Identities=25% Similarity=0.278 Sum_probs=53.9
Q ss_pred CeEEECCCCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceee-------eEEEEcCCCeE-EE
Q 012024 121 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTY-------SSLDVHVGQSY-SV 192 (472)
Q Consensus 121 d~~liNG~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~-------~~l~l~~G~R~-dv 192 (472)
|.-.||.-++.|.---....+|-|-+=|.|.. .+.++...++|+ +||..+.|..+ +.+.|.|||-- ++
T Consensus 51 dFaIIndPg~i~~~~~~g~~t~t~yiKNtG~~---~~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev 126 (154)
T COG3354 51 DFAIINDPGQIPYVGTDGPYTYTFYIKNTGSD---SIAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREV 126 (154)
T ss_pred cEEEecCCCCCccccCCCceEEEEEEecCCCc---ccccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEE
Confidence 45667765543322211225788999999875 356677777765 89988866433 56779999977 77
Q ss_pred EEEeCCCCCceEEEEee
Q 012024 193 LVTADQPARDYYIVVSS 209 (472)
Q Consensus 193 ~v~~~~~~g~y~i~~~~ 209 (472)
.|.-. ..|.-.|.+..
T Consensus 127 ~vn~~-lSGyhri~V~~ 142 (154)
T COG3354 127 TVNEA-LSGYHRIVVSL 142 (154)
T ss_pred EeccC-CCcceEEEEEc
Confidence 77654 33654555443
No 96
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.74 E-value=90 Score=29.38 Aligned_cols=76 Identities=11% Similarity=0.096 Sum_probs=53.2
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.+++.++..+ -.| .|+|-+-+ ...|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViH-------sf~vP~lg-----------------~K~Dav---PG~~n~~~~~~~~~G~ 191 (227)
T MTH00117 140 HRMVIPMESPIRILITAED-VLH-------SWAVPSLG-----------------VKTDAV---PGRLNQTSFITTRPGV 191 (227)
T ss_pred ceEEEecCceEEEEEEecc-hhh-------cccccccC-----------------ceeEec---CCceEEEEEEEcccce
Confidence 4678899999999999876 334 44443332 123443 6777888999999999
Q ss_pred eEeeecchhHH-hcccEEEEEEecC
Q 012024 421 WNLRSESWARQ-YLGQQFYLRVYTA 444 (472)
Q Consensus 421 w~~HCHil~H~-d~GMm~~~~V~~~ 444 (472)
+.--|--+-.. |.-|-..++|..+
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~ 216 (227)
T MTH00117 192 FYGQCSEICGANHSFMPIVVESVPL 216 (227)
T ss_pred EEEEeccccccCccCCeEEEEEcCH
Confidence 99999876655 4455666666544
No 97
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.48 E-value=84 Score=29.61 Aligned_cols=76 Identities=8% Similarity=0.108 Sum_probs=53.1
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.+++.++..+ -.|- |+|-+-+ ...|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHs-------f~vP~lg-----------------~k~da~---PG~~n~~~~~~~~~G~ 191 (228)
T MTH00076 140 NRMVVPMESPIRMLITAED-VLHS-------WAVPSLG-----------------IKTDAI---PGRLNQTSFIASRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEecc-cccc-------ccccccC-----------------ceEEcc---CCcceeEEEEeCCcEE
Confidence 4678899999999999876 3444 4443332 123333 5777788899999999
Q ss_pred eEeeecchhHH-hcccEEEEEEecC
Q 012024 421 WNLRSESWARQ-YLGQQFYLRVYTA 444 (472)
Q Consensus 421 w~~HCHil~H~-d~GMm~~~~V~~~ 444 (472)
+---|.-+-.. |..|-..++|..+
T Consensus 192 ~~g~C~e~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00076 192 YYGQCSEICGANHSFMPIVVEATPL 216 (228)
T ss_pred EEEEChhhcCccccCCceEEEEeCH
Confidence 99999876654 4566666776654
No 98
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.74 E-value=98 Score=29.26 Aligned_cols=76 Identities=7% Similarity=0.098 Sum_probs=52.6
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.|++.+++.+ -.|-|.+ -+-+ ...|.+ ||....+.|.++.||.
T Consensus 144 n~lvlP~~~~v~~~itS~D-ViHsf~v-------p~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 195 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD-VLHSFAV-------PSLS-----------------VKIDAV---PGRLNQTSFFIKRPGV 195 (234)
T ss_pred eEEEEecCcEEEEEEEeCc-hhccccc-------cccC-----------------ceeEcc---CCceEeEEEEeCCCEE
Confidence 5678899999999999875 4454444 3322 123333 5777788899999999
Q ss_pred eEeeecchhHH-hcccEEEEEEecC
Q 012024 421 WNLRSESWARQ-YLGQQFYLRVYTA 444 (472)
Q Consensus 421 w~~HCHil~H~-d~GMm~~~~V~~~ 444 (472)
+---|.-+-.. |.-|-..++|+.+
T Consensus 196 y~g~Cse~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 196 FYGQCSEICGANHSFMPIVIEGVSL 220 (234)
T ss_pred EEEEChhhcCcccccCeeEEEEECH
Confidence 99999876544 4556666766654
No 99
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=45.28 E-value=26 Score=35.53 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=31.3
Q ss_pred CCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCC
Q 012024 34 CPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRP 79 (472)
Q Consensus 34 ~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 79 (472)
-.|.||.+.++.+++ .+|||=|+|= .+ ..+.|.|+|.+..
T Consensus 80 EnIaPG~s~~l~~~L--~pGtY~~~C~--~~--~~~~g~l~Vtg~~ 119 (375)
T PRK10378 80 ENIAPGFSQKMTANL--QPGEYDMTCG--LL--TNPKGKLIVKGEA 119 (375)
T ss_pred cccCCCCceEEEEec--CCceEEeecC--cC--CCCCceEEEeCCC
Confidence 359999999998877 4999999993 22 3358999998753
No 100
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=44.66 E-value=67 Score=33.17 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=28.7
Q ss_pred ceEEeCCCCEEEEEEEecCceeeEee----ecchhHHhcccEE
Q 012024 399 VTVQVYPKSWSAIYIALDNVGMWNLR----SESWARQYLGQQF 437 (472)
Q Consensus 399 DTv~vp~~g~~~irf~adnpG~w~~H----CHil~H~d~GMm~ 437 (472)
=-+.+.|....++-|.++-||.|++- ||.++-|..|-|+
T Consensus 592 v~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rml 634 (637)
T COG4263 592 VNMEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRML 634 (637)
T ss_pred eEEEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhcccee
Confidence 34556677888999999999999876 5666555555554
No 101
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=44.31 E-value=63 Score=26.66 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=27.8
Q ss_pred EEEEEEEEccCC-CcEeEEEeCce-eEEEEeCCccccceeeeEEEEcCCCeEEEEEEe
Q 012024 141 TYRLRISNVGLQ-NSLNFRIQNHK-MKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTA 196 (472)
Q Consensus 141 ~~rlR~in~~~~-~~~~~~i~~h~-~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~ 196 (472)
.|+++|+|.+.. ..+.++++|.. +.+ . .....+.|.+|+..++-|..
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l--------~-~~~~~i~v~~g~~~~~~v~v 82 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAEL--------Q-GPENTITVPPGETREVPVFV 82 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEE--------E-CCCcceEECCCCEEEEEEEE
Confidence 589999998866 66777777642 222 1 13467888888888776654
No 102
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=44.28 E-value=1.5e+02 Score=28.36 Aligned_cols=62 Identities=15% Similarity=0.263 Sum_probs=42.7
Q ss_pred ceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeeee
Q 012024 132 AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRF 211 (472)
Q Consensus 132 ~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~ 211 (472)
..+.+..|++++|++--... .+.|.|.+-. -.+..-||...+..++++ .+|.|..+.+..+
T Consensus 137 n~l~lPv~~~V~f~ltS~DV--iHsF~IP~l~----------------~k~d~iPG~~~~~~~~~~-~~G~Y~g~Cae~C 197 (247)
T COG1622 137 NELVLPVGRPVRFKLTSADV--IHSFWIPQLG----------------GKIDAIPGMTTELWLTAN-KPGTYRGICAEYC 197 (247)
T ss_pred ceEEEeCCCeEEEEEEechh--ceeEEecCCC----------------ceeeecCCceEEEEEecC-CCeEEEEEcHhhc
Confidence 56778888888888765543 3444444333 334455788888889988 6799999887654
Q ss_pred c
Q 012024 212 T 212 (472)
Q Consensus 212 ~ 212 (472)
+
T Consensus 198 G 198 (247)
T COG1622 198 G 198 (247)
T ss_pred C
Confidence 4
No 103
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=44.11 E-value=65 Score=31.92 Aligned_cols=73 Identities=10% Similarity=0.180 Sum_probs=51.7
Q ss_pred EEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCceee
Q 012024 342 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 421 (472)
Q Consensus 342 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w 421 (472)
.+.++.|+.|++.|+..+ -.|. |+|-+-+. ..|.+ ||-...+.|.+|.||.|
T Consensus 152 eL~iP~g~pV~f~lTS~D-ViHS-------F~IP~Lg~-----------------K~dam---PG~~n~l~~~a~~~G~Y 203 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNS-VMNS-------FFIPRLGS-----------------QIYAM---AGMQTRLHLIANEPGTY 203 (315)
T ss_pred cEEEecCCEEEEEEEEch-hhhh-------hhhhhhCC-----------------eeecC---CCceeEEEEEcCCCEEE
Confidence 467899999999999876 3344 44443322 23433 57778899999999999
Q ss_pred EeeecchhHH-hcccEEEEEEe
Q 012024 422 NLRSESWARQ-YLGQQFYLRVY 442 (472)
Q Consensus 422 ~~HCHil~H~-d~GMm~~~~V~ 442 (472)
.-.|--.--. +..|...+.+.
T Consensus 204 ~G~CaEyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 204 DGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_pred EEEChhhcCccccCCeEEEEEE
Confidence 9999876644 45666666665
No 104
>COG1470 Predicted membrane protein [Function unknown]
Probab=43.61 E-value=2e+02 Score=29.97 Aligned_cols=87 Identities=20% Similarity=0.330 Sum_probs=55.6
Q ss_pred ceEEEeCCc--EEEEEEEEccCC--CcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEE--EEEEeCC--CCCce
Q 012024 132 AAFNVEQGK--TYRLRISNVGLQ--NSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYS--VLVTADQ--PARDY 203 (472)
Q Consensus 132 ~~~~v~~g~--~~rlR~in~~~~--~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~d--v~v~~~~--~~g~y 203 (472)
.++++.+|+ ..++++-|.|+. .-+.+.+++-.=|=|.+|+.-+ +. |.||+|-. +-++++. .+|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~s--L~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----PS--LEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----cc--cCCCCcceEEEEEEcCCCCCCCcE
Confidence 567788885 568999999865 5667777776667777776533 22 45666554 4455554 46899
Q ss_pred EEEEeeeecCCCCceEEEEEEeCC
Q 012024 204 YIVVSSRFTSTVLTTTGILHYSNS 227 (472)
Q Consensus 204 ~i~~~~~~~~~~~~~~ail~y~~~ 227 (472)
.+......+ + .+....|+....
T Consensus 462 ~i~i~~ksD-q-~s~e~tlrV~V~ 483 (513)
T COG1470 462 RITITAKSD-Q-ASSEDTLRVVVG 483 (513)
T ss_pred EEEEEEeec-c-ccccceEEEEEe
Confidence 998776554 2 233445555433
No 105
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.79 E-value=1.2e+02 Score=28.42 Aligned_cols=76 Identities=11% Similarity=0.152 Sum_probs=53.4
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.+++.++..+ -.|-|-+ -+-+ ..+|.+ ||-...+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHsf~v-------p~l~-----------------~k~dav---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD-VIHSWTV-------PSLG-----------------VKVDAV---PGRLNQLNFLINRPGL 191 (227)
T ss_pred ceEEEecCCEEEEEEEcCc-hhhheec-------cccC-----------------CeeecC---CCceEEEEEEEcCceE
Confidence 4577899999999999876 4455443 3322 224544 6777888999999999
Q ss_pred eEeeecchhHH-hcccEEEEEEecC
Q 012024 421 WNLRSESWARQ-YLGQQFYLRVYTA 444 (472)
Q Consensus 421 w~~HCHil~H~-d~GMm~~~~V~~~ 444 (472)
+.--|--+--. |.-|-..++|..+
T Consensus 192 y~g~Cse~CG~~H~~M~~~v~vv~~ 216 (227)
T MTH00154 192 FFGQCSEICGANHSFMPIVIESVSV 216 (227)
T ss_pred EEEEeechhCcCccCCeEEEEEeCH
Confidence 99999876544 4556666766654
No 106
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.70 E-value=97 Score=29.85 Aligned_cols=77 Identities=9% Similarity=0.085 Sum_probs=54.3
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.+++.++..+ -.|-| +|=+-+ ..+|.+ ||-.-.+.|.++.||.
T Consensus 174 n~lvlP~~~~v~~~ltS~D-ViHSf-------~vP~lg-----------------vK~Dai---PGr~n~~~~~~~~~G~ 225 (262)
T MTH00027 174 NRLILPVDTNVRVLITAAD-VLHSW-------TVPSLA-----------------VKMDAV---PGRINETGFLIKRPGI 225 (262)
T ss_pred ceEEEeeCcEEEEEEEcCc-cccce-------eccccc-----------------CcccCC---CCceeeEEEEcCCcEE
Confidence 4678899999999998876 44544 433332 224544 4666678899999999
Q ss_pred eEeeecchhHH-hcccEEEEEEecCC
Q 012024 421 WNLRSESWARQ-YLGQQFYLRVYTAS 445 (472)
Q Consensus 421 w~~HCHil~H~-d~GMm~~~~V~~~~ 445 (472)
+.-.|.-+--. |..|-..++|..++
T Consensus 226 y~g~CsE~CG~~Hs~Mpi~v~vv~~~ 251 (262)
T MTH00027 226 FYGQCSEICGANHSFMPIVVESVSLS 251 (262)
T ss_pred EEEEcchhcCcCcCCCeEEEEEECHH
Confidence 99999976644 56777777776553
No 107
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=38.52 E-value=1.1e+02 Score=31.06 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=53.9
Q ss_pred EEECC-CCCCceEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCC
Q 012024 123 ILING-RGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPAR 201 (472)
Q Consensus 123 ~liNG-~~~~~~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g 201 (472)
+.|+. ...+..++|++|+ .+|.+.|.+... ++|.++ +|+.+ .-+.=.|.||....+.+.+ .+|
T Consensus 34 Vti~d~~c~p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~--~~~~v---v~e~EnIaPG~s~~l~~~L--~pG 97 (375)
T PRK10378 34 VTVNDKQCEPMTLTVNAGK-TQFIIQNHSQKA--------LEWEIL--KGVMV---VEERENIAPGFSQKMTANL--QPG 97 (375)
T ss_pred EEEECCccccCceeeCCCC-EEEEEEeCCCCc--------ceEEee--ccccc---cccccccCCCCceEEEEec--CCc
Confidence 44544 5567899999995 899999998652 334444 23211 0012378999888888877 479
Q ss_pred ceEEEEeeeecCCCCceEEEEEEeCC
Q 012024 202 DYYIVVSSRFTSTVLTTTGILHYSNS 227 (472)
Q Consensus 202 ~y~i~~~~~~~~~~~~~~ail~y~~~ 227 (472)
+|.+.+... ....+.+...+.
T Consensus 98 tY~~~C~~~-----~~~~g~l~Vtg~ 118 (375)
T PRK10378 98 EYDMTCGLL-----TNPKGKLIVKGE 118 (375)
T ss_pred eEEeecCcC-----CCCCceEEEeCC
Confidence 999876321 123566666654
No 108
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.00 E-value=1.2e+02 Score=28.53 Aligned_cols=77 Identities=8% Similarity=0.079 Sum_probs=53.7
Q ss_pred eeEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCce
Q 012024 340 TAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVG 419 (472)
Q Consensus 340 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG 419 (472)
.+.+.++.|+.+++.++..+ -.|-|.+ -+-+ ...|.+ ||-...+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~D-ViHsf~v-------P~lg-----------------~k~dai---PG~~n~~~~~~~~~G 190 (225)
T MTH00168 139 DNRLVLPMDSKIRVLVTSAD-VLHSWTL-------PSLG-----------------LKMDAV---PGRLNQLAFLSSRPG 190 (225)
T ss_pred cceEEEecCCEEEEEEEeCC-hhhcccc-------cccc-----------------ccccCC---CCeEEEEEEEcCCCE
Confidence 35677899999999999876 4454443 2222 223444 677778889999999
Q ss_pred eeEeeecchhHH-hcccEEEEEEecC
Q 012024 420 MWNLRSESWARQ-YLGQQFYLRVYTA 444 (472)
Q Consensus 420 ~w~~HCHil~H~-d~GMm~~~~V~~~ 444 (472)
.+---|.-+--. |.-|-..++|..+
T Consensus 191 ~~~g~CsE~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 191 SFYGQCSEICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEEEcccccCcCcCCCeEEEEEeCH
Confidence 999999976644 4556666766654
No 109
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.67 E-value=1.4e+02 Score=28.07 Aligned_cols=77 Identities=9% Similarity=0.158 Sum_probs=54.5
Q ss_pred eeEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCce
Q 012024 340 TAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVG 419 (472)
Q Consensus 340 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG 419 (472)
.+.+.++.|+.|++.++..+ -.|-|.+ -+-+ ..+|.+ ||-...+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~D-ViHsf~v-------P~l~-----------------~K~Dai---PG~~n~~~~~~~~~G 190 (226)
T MTH00139 139 DNRLVLPYKSNIRALITAAD-VLHSWTV-------PSLG-----------------VKIDAV---PGRLNQVGFFINRPG 190 (226)
T ss_pred CceEEEecCCEEEEEEecCc-cccceec-------cccC-----------------ccccCC---CCcEEEEEEEcCCCE
Confidence 35678899999999998876 4455443 3332 235655 577778899999999
Q ss_pred eeEeeecchhHH-hcccEEEEEEecC
Q 012024 420 MWNLRSESWARQ-YLGQQFYLRVYTA 444 (472)
Q Consensus 420 ~w~~HCHil~H~-d~GMm~~~~V~~~ 444 (472)
.+.--|--+--. |.-|-..++|+.+
T Consensus 191 ~y~g~CsE~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 191 VFYGQCSEICGANHSFMPIVVEAISP 216 (226)
T ss_pred EEEEEChhhcCcCcCCCeEEEEEeCH
Confidence 999999876544 4456666776654
No 110
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=35.06 E-value=54 Score=22.57 Aligned_cols=40 Identities=3% Similarity=-0.079 Sum_probs=29.3
Q ss_pred CCCccceEE-eCCCCEEEEEEEecCceeeEeeecchhHHhc
Q 012024 394 DAVARVTVQ-VYPKSWSAIYIALDNVGMWNLRSESWARQYL 433 (472)
Q Consensus 394 ~p~~rDTv~-vp~~g~~~irf~adnpG~w~~HCHil~H~d~ 433 (472)
.|..+-+.. .+.+....++++...-..+=+||..+.|.+.
T Consensus 5 kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 5 KPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 344443332 3567788889999888899999999999763
No 111
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.83 E-value=1.6e+02 Score=27.71 Aligned_cols=77 Identities=9% Similarity=0.062 Sum_probs=54.2
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCCeeecCCceEEEEeecCCCCCCCCCCCCcCCCCccceEEeCCCCEEEEEEEecCcee
Q 012024 341 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 420 (472)
Q Consensus 341 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 420 (472)
+.+.++.|+.+++.++..+ -.|-|-+ =+-+ ...|.+ ||-...+.|.++.||.
T Consensus 143 n~l~lP~~~~v~~~itS~D-ViHSf~v-------P~lg-----------------~K~Dav---PGr~n~~~~~~~~~G~ 194 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSD-VIHSWAL-------PSLS-----------------IKMDAM---SGILSTLCYSFPMPGV 194 (231)
T ss_pred CceEeecCcEEEEEEEeCc-ccccccc-------cccC-----------------ceeecc---CCceEEEEEEEcCceE
Confidence 4567899999999999876 4455444 2222 234554 5677788899999999
Q ss_pred eEeeecchhHH-hcccEEEEEEecCC
Q 012024 421 WNLRSESWARQ-YLGQQFYLRVYTAS 445 (472)
Q Consensus 421 w~~HCHil~H~-d~GMm~~~~V~~~~ 445 (472)
+.--|--+--. |..|-..++|..++
T Consensus 195 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 220 (231)
T MTH00080 195 FYGQCSEICGANHSFMPIAVEVTLLD 220 (231)
T ss_pred EEEEehhhcCcCccCCEEEEEEECHH
Confidence 99999865544 45677777776553
No 112
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=33.73 E-value=53 Score=27.71 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=31.8
Q ss_pred CCCCCCCeEEEEEEeCC-ceee-eEEecccchhhhcCceeEEE
Q 012024 34 CPIPPGKNFTYILQVKD-QIGS-FYYFPSLAFHKAAGGFGGIR 74 (472)
Q Consensus 34 ~~i~pG~~~~Y~~~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~li 74 (472)
.-|.||++.+-.|+++. ++|+ |=|-|-.-.+.+ .|.|.|.
T Consensus 83 kliggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 83 KVIGGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred cccCCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 44899999999999862 5786 999998766665 5888775
No 113
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=31.68 E-value=29 Score=28.83 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=31.6
Q ss_pred cccccCC---eeEeccCCCCCCC---CCCCCCCccCCCCCCCCeEEEEEEeC--Cceee
Q 012024 4 TATSIRS---AFANGNGIQNRRN---SFEDGVYGTTCPIPPGKNFTYILQVK--DQIGS 54 (472)
Q Consensus 4 ~n~l~~~---tsiHwHG~~~~~~---~~~DGv~~tq~~i~pG~~~~Y~~~~~--~~~Gt 54 (472)
+|....+ .+=|||=-...+. -.-+||-|-|.-|.||++|+|.=-.+ .+.|+
T Consensus 37 ~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 37 RNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred ecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcce
Confidence 4554443 4558874432211 12467777899999999999975443 45666
No 114
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=30.57 E-value=56 Score=27.39 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=18.3
Q ss_pred CCCCCccCCCCCCCCeEEEEEEeC
Q 012024 26 EDGVYGTTCPIPPGKNFTYILQVK 49 (472)
Q Consensus 26 ~DGv~~tq~~i~pG~~~~Y~~~~~ 49 (472)
.||=-...|||.+|+.++|.+.++
T Consensus 65 ~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 65 TDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCcccEeCCCcCCcEEEEEEeee
Confidence 455322479999999999999774
No 115
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=29.62 E-value=32 Score=29.20 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=15.9
Q ss_pred CCCCCccCCCCCCCCeEEEEE
Q 012024 26 EDGVYGTTCPIPPGKNFTYIL 46 (472)
Q Consensus 26 ~DGv~~tq~~i~pG~~~~Y~~ 46 (472)
-+||-|-|.-|.||++|.|.=
T Consensus 66 G~GVVG~qP~L~PGe~F~Y~S 86 (127)
T PRK05461 66 GEGVVGEQPVLAPGESFEYTS 86 (127)
T ss_pred CCceecCCceECCCCCeEEeC
Confidence 456666677799999888864
No 116
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=28.94 E-value=2.8e+02 Score=22.94 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=40.8
Q ss_pred eEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCcccccee----eeEEEEcCCCeEEEEEEeCC--CCCceEEE
Q 012024 133 AFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTT----YSSLDVHVGQSYSVLVTADQ--PARDYYIV 206 (472)
Q Consensus 133 ~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~----~~~l~l~~G~R~dv~v~~~~--~~g~y~i~ 206 (472)
+-.+..|+.+++|+-=-.....-.+. -.+.+...||..+--.. ...+....++++.+.+.++. .+|+|.|.
T Consensus 28 ~~~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~ 104 (142)
T PF14524_consen 28 TSSFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSIS 104 (142)
T ss_dssp -SSEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEE
T ss_pred eeEEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEE
Confidence 44467788888876554433222222 23566677776662211 23455555999999998876 58999998
Q ss_pred Eee
Q 012024 207 VSS 209 (472)
Q Consensus 207 ~~~ 209 (472)
+..
T Consensus 105 v~l 107 (142)
T PF14524_consen 105 VGL 107 (142)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 117
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.51 E-value=43 Score=32.26 Aligned_cols=9 Identities=11% Similarity=0.150 Sum_probs=6.8
Q ss_pred eeEEecccc
Q 012024 54 SFYYFPSLA 62 (472)
Q Consensus 54 t~wYH~H~~ 62 (472)
-=|||+|-+
T Consensus 134 VGWyHSHPg 142 (347)
T KOG1554|consen 134 VGWYHSHPG 142 (347)
T ss_pred eeeeecCCC
Confidence 359999954
No 118
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=27.72 E-value=26 Score=29.13 Aligned_cols=6 Identities=17% Similarity=0.539 Sum_probs=5.5
Q ss_pred EEeccc
Q 012024 56 YYFPSL 61 (472)
Q Consensus 56 wYH~H~ 61 (472)
|||||.
T Consensus 70 ~YHSHP 75 (119)
T cd08058 70 WYHSHP 75 (119)
T ss_pred EEecCC
Confidence 999995
No 119
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=26.09 E-value=1.6e+02 Score=23.86 Aligned_cols=72 Identities=8% Similarity=0.176 Sum_probs=0.0
Q ss_pred CcccccccCCeeEeccCCCCCCCCCCC-CCCccCCCCCCCCeEEEEEEeCCceeeeEEecccchhhhcCceeEEEEeCCC
Q 012024 1 MSLTATSIRSAFANGNGIQNRRNSFED-GVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRP 79 (472)
Q Consensus 1 ~~~~n~l~~~tsiHwHG~~~~~~~~~D-Gv~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 79 (472)
+.++|+|.....|..|=- +..-| |+-. +.||++|..+|.. +-.|+--|.|+... .......-+.|....
T Consensus 3 V~I~N~L~~~~~L~vhC~----S~d~Dlg~~~----l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~~~ 72 (110)
T PF05938_consen 3 VVIINNLGPGKILTVHCK----SKDDDLGWHV----LKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYRSS 72 (110)
T ss_pred EEEEECCCCCCeEEEEee----CCCccCCCEE----CCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEecc
Q ss_pred CCC
Q 012024 80 RIP 82 (472)
Q Consensus 80 ~~~ 82 (472)
...
T Consensus 73 ~~~ 75 (110)
T PF05938_consen 73 RDS 75 (110)
T ss_pred ccc
No 120
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.98 E-value=83 Score=27.27 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=22.8
Q ss_pred CCCCCCCCeEEEEEEe---CCceeeeEEeccc
Q 012024 33 TCPIPPGKNFTYILQV---KDQIGSFYYFPSL 61 (472)
Q Consensus 33 q~~i~pG~~~~Y~~~~---~~~~Gt~wYH~H~ 61 (472)
..||+||++++-.++. |...|+|-|++=.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 5789999999999943 3456999998753
No 121
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.65 E-value=5.2e+02 Score=23.62 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=38.4
Q ss_pred eEEEeCCcEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeeee
Q 012024 133 AFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRF 211 (472)
Q Consensus 133 ~~~v~~g~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~ 211 (472)
.+.++.|+.+||++-.... .+.|.+.+-. -.+..-||..-.+-+.++ .+|.|..+.+...
T Consensus 117 ~l~lp~g~~v~~~ltS~DV--iHsf~vp~l~----------------~k~d~~PG~~~~~~~~~~-~~G~y~g~C~e~C 176 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSDV--IHSFSVPDLN----------------LKMDAIPGRINHLFFCPD-RHGVFVGYCSELC 176 (194)
T ss_pred eEEEeCCCEEEeeeecCcc--ccceeccccC----------------ceeecCCCceEEEEEEcC-CCEEEEEEeehhh
Confidence 4777888888887765544 3333333322 123344788888888887 5799998876543
No 122
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=25.34 E-value=1.7e+02 Score=27.58 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=30.2
Q ss_pred ceEEEeCCcEEEEEEEEccCC--CcEeEEEeCceeEEEEeCCccccc
Q 012024 132 AAFNVEQGKTYRLRISNVGLQ--NSLNFRIQNHKMKLVEVEGTHTLQ 176 (472)
Q Consensus 132 ~~~~v~~g~~~rlR~in~~~~--~~~~~~i~~h~~~via~DG~~~~p 176 (472)
..+-+++| +|.||+|..+-. .-...-| +.-++++|+|+.+.+.
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I-~NGeYl~aTd~rytqT 138 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNI-DNGEYLYATDNRYTQT 138 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEe-CCceEEEEcCCceeEE
Confidence 35778897 799999987643 2223333 4458999999998753
No 123
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=24.89 E-value=61 Score=25.69 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=17.2
Q ss_pred CCCCCccCCCCCCCCeEEEEEEeC--Cceee
Q 012024 26 EDGVYGTTCPIPPGKNFTYILQVK--DQIGS 54 (472)
Q Consensus 26 ~DGv~~tq~~i~pG~~~~Y~~~~~--~~~Gt 54 (472)
-+||-+.|.-|.||++|+|.=-.. .+.|+
T Consensus 49 G~GVVG~~P~L~pGe~f~Y~S~~~l~t~~G~ 79 (90)
T PF04379_consen 49 GEGVVGQQPVLAPGESFEYTSGCPLSTPSGS 79 (90)
T ss_dssp EESBTTB--EE-TTEEEEEEEEEEESSSEEE
T ss_pred CCceEccCceECCCCcEEEcCCCCcCCCCEE
Confidence 466766666789999888874432 44555
No 124
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=24.35 E-value=3.5e+02 Score=21.20 Aligned_cols=59 Identities=24% Similarity=0.233 Sum_probs=34.2
Q ss_pred EeCCcEE--EEEEEEccCC-CcEeEEEeCc---eeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeC-C-CCCceEE
Q 012024 136 VEQGKTY--RLRISNVGLQ-NSLNFRIQNH---KMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTAD-Q-PARDYYI 205 (472)
Q Consensus 136 v~~g~~~--rlR~in~~~~-~~~~~~i~~h---~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~-~-~~g~y~i 205 (472)
+..|++| .+.|.|.|.. ..+++..... .+.+ +| ..-.|+||+..++-|.+. . ..|.|.-
T Consensus 16 v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 16 VFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 4456655 5889999876 3333433321 1111 22 233589999999999886 2 3565543
No 125
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=24.04 E-value=3.4e+02 Score=20.96 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=35.4
Q ss_pred cEEEEEEEEccCCCcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEe
Q 012024 140 KTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVS 208 (472)
Q Consensus 140 ~~~rlR~in~~~~~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~ 208 (472)
..++|.|.|.|.. ...|.+.+ ..+ .......+.|.+|++.++.+.+....|-|.+.+.
T Consensus 20 g~l~l~l~N~g~~-~~~~~v~~---------~~y-~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~ 77 (89)
T PF05506_consen 20 GNLRLTLSNPGSA-AVTFTVYD---------NAY-GGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVT 77 (89)
T ss_pred CEEEEEEEeCCCC-cEEEEEEe---------CCc-CCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEE
Confidence 3688999998765 33333332 111 1122367778888888888877545666766554
No 126
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=23.93 E-value=92 Score=27.00 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=19.5
Q ss_pred eCCCCEEEEEEEe-cCc---eeeEeeecc
Q 012024 403 VYPKSWSAIYIAL-DNV---GMWNLRSES 427 (472)
Q Consensus 403 vp~~g~~~irf~a-dnp---G~w~~HCHi 427 (472)
|+||..+.|.++. .|| |.|.|+|=.
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 4688999999854 465 889999865
No 127
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=22.89 E-value=65 Score=28.04 Aligned_cols=18 Identities=28% Similarity=0.875 Sum_probs=16.1
Q ss_pred cCCCCCCCCeEEEEEEeC
Q 012024 32 TTCPIPPGKNFTYILQVK 49 (472)
Q Consensus 32 tq~~i~pG~~~~Y~~~~~ 49 (472)
.-||+.+|+.++|.+.++
T Consensus 106 v~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 106 VYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred ccCcccCCCceEEEEEee
Confidence 359999999999999886
No 128
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=22.87 E-value=2.5e+02 Score=26.36 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.7
Q ss_pred CCceEEEeCCcEEEEEEEEcc
Q 012024 130 SGAAFNVEQGKTYRLRISNVG 150 (472)
Q Consensus 130 ~~~~~~v~~g~~~rlR~in~~ 150 (472)
.+|.+++++|+.+.+|++..+
T Consensus 74 tPPl~rl~pg~~q~vRii~~~ 94 (230)
T PRK09918 74 TPPVARVEPGQSQQVRFILKS 94 (230)
T ss_pred cCCeEEECCCCceEEEEEECC
Confidence 478999999999999999765
No 129
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=22.85 E-value=2.5e+02 Score=22.85 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=28.0
Q ss_pred ceeeeEEEEcCCCeEEEEEEeCCCCCceEEEEeeeec
Q 012024 176 QTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRFT 212 (472)
Q Consensus 176 p~~~~~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~~ 212 (472)
++..+.+...-..|..++|-++=++|.|.|.+...+.
T Consensus 52 ~v~~~~i~~N~ps~l~~~lPa~L~~G~Y~l~V~Tq~~ 88 (102)
T PF14734_consen 52 KVPCSSIVRNKPSRLIFILPADLAAGEYTLEVRTQYS 88 (102)
T ss_pred EecHHHeEeCCCcEEEEECcCccCceEEEEEEEEEec
Confidence 4445678888888999999775578999998876544
No 130
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=22.53 E-value=93 Score=23.76 Aligned_cols=40 Identities=28% Similarity=0.464 Sum_probs=21.9
Q ss_pred CCCCCccCCCCCCCCeEEEEEEeCCceeeeEEecccc-hhhhcCc
Q 012024 26 EDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLA-FHKAAGG 69 (472)
Q Consensus 26 ~DGv~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~-~q~~~Gl 69 (472)
.+|.-..-.+++||. +.|+|.+ + |..+-++... .+..+|+
T Consensus 34 ~~G~w~~~~~l~~G~-y~Ykf~v-d--g~~~~~DP~~~~~~~~~~ 74 (82)
T cd02861 34 GDGLWVVTVELRPGR-YEYKFVV-D--GEWVIVDPNAAAYVDDGF 74 (82)
T ss_pred CCCcEEEEEeCCCCc-EEEEEEE-C--CEEeeCCCCCCceecCCC
Confidence 346543223577877 8899988 3 4444144433 4455554
No 131
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=22.35 E-value=72 Score=26.74 Aligned_cols=18 Identities=39% Similarity=0.958 Sum_probs=16.1
Q ss_pred cCCCCCCCCeEEEEEEeC
Q 012024 32 TTCPIPPGKNFTYILQVK 49 (472)
Q Consensus 32 tq~~i~pG~~~~Y~~~~~ 49 (472)
+.|||.+|+.++|.+.++
T Consensus 75 ~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 75 TSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCCCCcCCcEEEEEEeee
Confidence 679999999999999764
No 132
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=22.14 E-value=2.8e+02 Score=28.91 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=32.2
Q ss_pred EEEEEEEEccCC-CcEeEEEeCceeEEEEeCCccccceeeeEEEEcCCCeEEEEEEe
Q 012024 141 TYRLRISNVGLQ-NSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTA 196 (472)
Q Consensus 141 ~~rlR~in~~~~-~~~~~~i~~h~~~via~DG~~~~p~~~~~l~l~~G~R~dv~v~~ 196 (472)
.|+++|+|.+.. ..+.++++|.+ |.-++-. .+.+.+.|||+.++.|..
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~~-------~~~~~~~-~~~i~v~~g~~~~~~v~v 397 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGLP-------GIKIEGP-GAPIHVKAGEKVKLPVFL 397 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CcEEEcC-CceEEECCCCEEEEEEEE
Confidence 589999998865 67777777643 2112111 127899999998777655
No 133
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=21.66 E-value=1.2e+02 Score=29.12 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=19.0
Q ss_pred CCceEEEeCCcEEEEEEEEcc
Q 012024 130 SGAAFNVEQGKTYRLRISNVG 150 (472)
Q Consensus 130 ~~~~~~v~~g~~~rlR~in~~ 150 (472)
.+|.+++++|++..+||+..+
T Consensus 84 tPPlfrl~p~~~q~lRI~~~~ 104 (253)
T PRK15249 84 TPPVFRIQPKAGQVVRVIYNN 104 (253)
T ss_pred cCCeEEecCCCceEEEEEEcC
Confidence 378999999999999999876
No 134
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=21.61 E-value=79 Score=26.49 Aligned_cols=18 Identities=28% Similarity=0.818 Sum_probs=15.6
Q ss_pred cCCCCCCCCeEEEEEEeC
Q 012024 32 TTCPIPPGKNFTYILQVK 49 (472)
Q Consensus 32 tq~~i~pG~~~~Y~~~~~ 49 (472)
..||+.+|+.++|.+.+.
T Consensus 78 ~~CPl~~G~~~~~~~~~~ 95 (127)
T cd00912 78 SFCPLRKGQQYSYAKTVN 95 (127)
T ss_pred ccCCcCCCCEEEEEEEEe
Confidence 479999999999998764
No 135
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=21.28 E-value=36 Score=33.43 Aligned_cols=8 Identities=13% Similarity=0.210 Sum_probs=6.7
Q ss_pred eEEecccc
Q 012024 55 FYYFPSLA 62 (472)
Q Consensus 55 ~wYH~H~~ 62 (472)
=|||||-+
T Consensus 119 GWYHSHP~ 126 (316)
T KOG1555|consen 119 GWYHSHPG 126 (316)
T ss_pred eeccCCCC
Confidence 49999965
No 136
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=21.08 E-value=4.1e+02 Score=24.89 Aligned_cols=30 Identities=10% Similarity=0.054 Sum_probs=22.0
Q ss_pred EEEEcCCCeEEEEEEeCCCCCceEEEEeeee
Q 012024 181 SLDVHVGQSYSVLVTADQPARDYYIVVSSRF 211 (472)
Q Consensus 181 ~l~l~~G~R~dv~v~~~~~~g~y~i~~~~~~ 211 (472)
....-||..-.+-++++ .+|.|..+.+...
T Consensus 170 K~DaiPG~~n~~~~~~~-~~G~y~g~CaE~C 199 (226)
T TIGR01433 170 QIYAMAGMQTKLHLIAN-EPGVYDGISANYS 199 (226)
T ss_pred eeecCCCceEEEEEEeC-CCEEEEEEchhhc
Confidence 34445888888888888 5789998876543
No 137
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=20.28 E-value=75 Score=26.57 Aligned_cols=18 Identities=33% Similarity=0.864 Sum_probs=14.9
Q ss_pred cCCCCCCCCeEEEEEEeC
Q 012024 32 TTCPIPPGKNFTYILQVK 49 (472)
Q Consensus 32 tq~~i~pG~~~~Y~~~~~ 49 (472)
..|||.+|+.++|.+.+.
T Consensus 84 ~~CPi~~G~~~~~~~~~~ 101 (134)
T PF02221_consen 84 LSCPIKAGEYYTYTYTIP 101 (134)
T ss_dssp TTSTBTTTEEEEEEEEEE
T ss_pred ccCccCCCcEEEEEEEEE
Confidence 479999999888887763
No 138
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=20.16 E-value=1.2e+02 Score=28.83 Aligned_cols=22 Identities=0% Similarity=0.092 Sum_probs=19.7
Q ss_pred CCceEEEeCCcEEEEEEEEccC
Q 012024 130 SGAAFNVEQGKTYRLRISNVGL 151 (472)
Q Consensus 130 ~~~~~~v~~g~~~rlR~in~~~ 151 (472)
.+|.+++++|+...+||+..+.
T Consensus 80 tPPl~rl~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 80 TPPVSRIDPKRGQTIKLMYTAS 101 (246)
T ss_pred cCCeEEECCCCccEEEEEeCCC
Confidence 4789999999999999998775
Done!