BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012025
(472 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana
GN=SGS3 PE=1 SV=1
Length = 625
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/441 (55%), Positives = 309/441 (70%), Gaps = 27/441 (6%)
Query: 21 KGKNVTEVSNSQVDHLSGSVADISLDSAQDDGG-WEVYVRKSKNKAGSGTTKSFGSQNSN 79
K KNV +V+ L +A L S+QDDGG WEV +K+KNK G+ + K++ SQNSN
Sbjct: 10 KEKNVQGGYRPEVEQLVQGLAGTRLASSQDDGGEWEVISKKNKNKPGNTSGKTWVSQNSN 69
Query: 80 Y-KAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNM 138
+AWG Q+ G RG+ SGR + I A ++ R + + + N +
Sbjct: 70 PPRAWG----GQQQG-RGSNVSGRGNNVSGRGNGNGRGIQAN-ISGRGRALSRKYDNNFV 123
Query: 139 ATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVEDDYDD--EKDDD 196
A RPPLE GWNWQ+R GS ++ D VEDD D+ E+++D
Sbjct: 124 APPPVSRPPLEGGWNWQARGGSAQHTAVQEFPD-------------VEDDVDNASEEEND 170
Query: 197 SNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPA 256
S+ DDSDD+L SD++DSD SQKSH +RK+++WFKKFF SL+SL++E+INEP RQWHCPA
Sbjct: 171 SDALDDSDDDLASDDYDSDVSQKSHGSRKQNKWFKKFFGSLDSLSIEQINEPQRQWHCPA 230
Query: 257 CQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPAGEVFGKW 316
CQ GPGAIDWY L PL+ HA+TKG++RVKLHRELAE+L+++L+ RG SVIP GE++G+W
Sbjct: 231 CQNGPGAIDWY-NLHPLLAHARTKGARRVKLHRELAEVLEKDLQMRGASVIPCGEIYGQW 289
Query: 317 KGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ 376
KGL + EKD+EIVWPPMVIIMNTRLDKD+NDKW GMGNQELLEYF Y A+RARHSYGPQ
Sbjct: 290 KGLGEDEKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEALRARHSYGPQ 349
Query: 377 GHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMAL 436
GHRGMSVL+FESSA GYLEAERLH+ AE G DR +W +R +F +GG RQLYGF+A
Sbjct: 350 GHRGMSVLMFESSATGYLEAERLHRELAEMGLDRIAW--GQKRSMF-SGGVRQLYGFLAT 406
Query: 437 KEDLDVFNQHCHGSSFSPLSL 457
K+DLD+FNQH G + L
Sbjct: 407 KQDLDIFNQHSQGKTRLKFEL 427
>sp|A5YVF1|SGS3_SOLLC Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum
GN=SGS3 PE=1 SV=1
Length = 633
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 239/444 (53%), Positives = 300/444 (67%), Gaps = 37/444 (8%)
Query: 16 SNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGS 75
SN+S K K S V+ ++ V DI L+S Q++G WEVY RK KNK GS K +
Sbjct: 11 SNSSEKQK---ASSTPTVEEINRGVGDIGLNSEQNEG-WEVYARKPKNKGGSSAGKQWAP 66
Query: 76 QN--------SNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQ 127
QN N KAWGH D +K G R N SGR W+T + K+ ARP
Sbjct: 67 QNPSPKAWGNQNTKAWGHPDVGKKSGTRNNAGSGRGSGNNWSTPSDPQKL------ARPH 120
Query: 128 LTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVED 187
L + + + P L++GW+W SR S H K++ + D+
Sbjct: 121 LYD-----GGFPSSAPVPPALKNGWDWSSRVAS--------AHPKDNSQVAAAADDDKAS 167
Query: 188 DYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINE 247
++D E D++ + D+SDD+L SD+FDSD + S++TRKK+ WF + F SL+SLTV EINE
Sbjct: 168 EHDAE-DNELDFLDESDDDLHSDDFDSDVGEMSYETRKKNPWFNQLFHSLDSLTVTEINE 226
Query: 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVI 307
P RQWHCPAC+GGPGAI+W+ GLQ LMTHAKTKG RVK+HRELAELL+E+LR+RGTSV+
Sbjct: 227 PERQWHCPACKGGPGAIEWFTGLQSLMTHAKTKGL-RVKIHRELAELLEEDLRQRGTSVV 285
Query: 308 PAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV 367
P GEV+G+W G++ KD EIVWPPMVIIMNTRLDKDENDKW GMGNQELLEYF YAAV
Sbjct: 286 PPGEVYGRWGGMEF--KDKEIVWPPMVIIMNTRLDKDENDKWIGMGNQELLEYFSSYAAV 343
Query: 368 RARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGK 427
+ARHSYGPQGHRGMS+LIFE+SA GY+EA+RL +HF+E G +RD+W R F+ GGK
Sbjct: 344 KARHSYGPQGHRGMSLLIFEASAVGYIEADRLSEHFSENGRNRDAW--ERRSARFYPGGK 401
Query: 428 RQLYGFMALKEDLDVFNQHCHGSS 451
R LYG+MA K+D+D FNQH G S
Sbjct: 402 RLLYGYMADKKDIDNFNQHSAGKS 425
>sp|A1Y2B7|SGS3_MAIZE Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3
PE=1 SV=1
Length = 594
Score = 360 bits (923), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 195/322 (60%), Positives = 242/322 (75%), Gaps = 15/322 (4%)
Query: 133 PETNNMATQTGIRPPLEHGWNWQSR---AGSTIFKHSEDGHDKESGNLDEVHKDNVEDDY 189
P + ++ + PPL +GW WQSR +GS + K SG++ EV +NV+ +
Sbjct: 81 PRPPSQTSRPVLAPPLANGWQWQSRPRPSGSEVKKDDAPP----SGSVPEV--ENVDGNN 134
Query: 190 DDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPA 249
+ DDD + D D SD S+KS +TRK ++WFK+FFE L +L++E+INE
Sbjct: 135 TSDDDDDDDDDLSDDISDDYD---SDASEKSFETRKTNKWFKEFFEVLNTLSLEQINEQT 191
Query: 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPA 309
RQWHCPAC+ GPGAIDWY+GLQPL++HA+TKGS RVKLHRELA LL+EEL RRGTSV+PA
Sbjct: 192 RQWHCPACKNGPGAIDWYKGLQPLVSHARTKGSTRVKLHRELAALLEEELSRRGTSVLPA 251
Query: 310 GEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRA 369
GE FGKWKGL+++ D EIVWPPMVI+MNT L+KDE+DKW GMGNQELL+YF Y A +A
Sbjct: 252 GEQFGKWKGLQES-TDREIVWPPMVIVMNTFLEKDEDDKWKGMGNQELLDYFGEYEASKA 310
Query: 370 RHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQ 429
RH+YGP GHRGMSVLIFESSA GY+EAERLHKHF QGTDR+SW+ R+V F GGKRQ
Sbjct: 311 RHAYGPSGHRGMSVLIFESSAVGYMEAERLHKHFVNQGTDRNSWH--LRKVRFVPGGKRQ 368
Query: 430 LYGFMALKEDLDVFNQHCHGSS 451
LYGF+A KED++ FN+HCHG S
Sbjct: 369 LYGFLANKEDMEAFNKHCHGKS 390
>sp|Q2QWE9|SGS3_ORYSJ Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa
subsp. japonica GN=SGS3 PE=2 SV=1
Length = 609
Score = 343 bits (880), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 192/343 (55%), Positives = 245/343 (71%), Gaps = 11/343 (3%)
Query: 109 TTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSED 168
T V + PA R RP N E A + PL +GW W +R+
Sbjct: 71 TLVRHSDRRPA-RGTPRPPPQNRSIEAELQAPHGVVTAPLANGWQWGARSCPP------- 122
Query: 169 GHDKESGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSR 228
G + + G L + + E D + D + +DD + LSD++DSD S+KS +TRK +
Sbjct: 123 GTESKEGGLP-LSGCDPETDNAEGYDTSDDDNDDDMSDDLSDDYDSDASEKSFETRKNHK 181
Query: 229 WFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLH 288
FK FFE LE+L+VE++NEP RQWHCPAC+ GPGAIDWY+GLQPLMTHAKTKGS +VK H
Sbjct: 182 LFKGFFEVLEALSVEQLNEPTRQWHCPACKNGPGAIDWYKGLQPLMTHAKTKGSIKVKRH 241
Query: 289 RELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDK 348
RELA LL+EEL RRGTSV+P+GE F KWKGL+++ D EIVWPPMV++MNT L++DE+DK
Sbjct: 242 RELASLLEEELSRRGTSVVPSGEQFRKWKGLRES-TDREIVWPPMVVVMNTVLEQDEDDK 300
Query: 349 WTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGT 408
W GMGNQEL++YF YAA +ARH+YGP GHRGMSVLIF+SSA GY+EAERLH HF Q T
Sbjct: 301 WKGMGNQELIDYFSEYAASKARHAYGPNGHRGMSVLIFDSSAVGYMEAERLHDHFVRQRT 360
Query: 409 DRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSS 451
DR++WN+++ +V F GGKRQLYGF+A K+D++ FN+HCHG S
Sbjct: 361 DRNTWNSAH-KVTFLPGGKRQLYGFLATKDDMETFNRHCHGKS 402
>sp|A2ZIW7|SGS3_ORYSI Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa
subsp. indica GN=SGS3 PE=3 SV=1
Length = 609
Score = 338 bits (867), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 190/343 (55%), Positives = 244/343 (71%), Gaps = 11/343 (3%)
Query: 109 TTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSED 168
T V + PA R RP N A + + PL +GW W +R+
Sbjct: 71 TLVRHSDRRPA-RGTPRPPPQNRSTGAELQAPRGVVTAPLANGWQWGARSCPP------- 122
Query: 169 GHDKESGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSR 228
G + + G L + + E D + D + +DD + LSD++DSD S+KS +TRK +
Sbjct: 123 GTESKEGGLP-LSGCDPETDNAEGDDTSDDDNDDDMSDDLSDDYDSDASEKSFETRKNHK 181
Query: 229 WFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLH 288
FK FFE L++L+VE++NEP RQWHCPAC+ GPGAIDWY+GLQPLMTHAKTKGS +VK H
Sbjct: 182 LFKGFFEVLDALSVEQLNEPTRQWHCPACKNGPGAIDWYKGLQPLMTHAKTKGSIKVKRH 241
Query: 289 RELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDK 348
RELA LL+EEL RRGTSV+P+GE F KWKGL++ D EIVWPPMV++MNT L++DE+DK
Sbjct: 242 RELASLLEEELSRRGTSVVPSGEQFRKWKGLREG-TDREIVWPPMVVVMNTVLEQDEDDK 300
Query: 349 WTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGT 408
W GMGNQEL++YF YAA +ARH+YGP GHRGMSVLIF+SSA GY+EAERLH HF Q T
Sbjct: 301 WKGMGNQELIDYFSEYAASKARHAYGPNGHRGMSVLIFDSSAVGYMEAERLHDHFVRQRT 360
Query: 409 DRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSS 451
DR++WN+++ +V F GGKRQLYGF+A K+D++ FN+HCHG S
Sbjct: 361 DRNTWNSAH-KVTFLPGGKRQLYGFLATKDDMETFNRHCHGKS 402
>sp|Q96662|POLG_BVDVC Genome polyprotein OS=Bovine viral diarrhea virus (strain CP7) PE=1
SV=1
Length = 3907
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 25/147 (17%)
Query: 276 HAKTKGSKRVKLHRELAELLDEELRRR-------GTSVIPAGEVFGKWKGLK---DTEKD 325
H +K++ +L+E LD E +R GT + AG K ++ DT+
Sbjct: 3294 HQGNLNTKKILNPGKLSEQLDREGHKRNIYNNQIGTIMTEAGSRLEKLPVVRAQTDTKSF 3353
Query: 326 HEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLI 385
HE + ++DK+EN + G+ + +LLE F A RH+Y + +
Sbjct: 3354 HEAI--------RDKIDKNENQQSPGL-HDKLLEIFHTIAQPSLRHTYSDVTWEQLEAGV 3404
Query: 386 FESSAGGYLEAERL------HKHFAEQ 406
A G+LE + + KH EQ
Sbjct: 3405 NRKGAAGFLEKKNVGEVLDSEKHLVEQ 3431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,021,628
Number of Sequences: 539616
Number of extensions: 9013003
Number of successful extensions: 50722
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 502
Number of HSP's that attempted gapping in prelim test: 35493
Number of HSP's gapped (non-prelim): 10652
length of query: 472
length of database: 191,569,459
effective HSP length: 121
effective length of query: 351
effective length of database: 126,275,923
effective search space: 44322848973
effective search space used: 44322848973
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)