Query 012025
Match_columns 472
No_of_seqs 127 out of 159
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 20:08:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8u_A Putative uncharacterize 100.0 1.4E-46 4.7E-51 348.0 8.8 127 322-455 3-134 (172)
2 1wez_A HnRNP H', FTP-3, hetero 91.8 0.25 8.4E-06 40.3 5.4 57 332-398 16-73 (102)
3 2cq3_A RNA-binding protein 9; 90.0 0.69 2.3E-05 36.8 6.4 49 332-389 16-65 (103)
4 2dnn_A RNA-binding protein 12; 88.7 0.81 2.8E-05 38.2 6.1 49 332-389 17-66 (109)
5 2cpy_A RNA-binding protein 12; 87.7 0.86 2.9E-05 37.3 5.6 47 333-388 17-66 (114)
6 2cqi_A Nucleolysin TIAR; RNA r 87.6 0.97 3.3E-05 35.9 5.7 48 333-389 17-65 (103)
7 2lmi_A GRSF-1, G-rich sequence 87.5 1 3.5E-05 36.5 5.9 58 332-399 12-74 (107)
8 2hgm_A HNRPF protein, heteroge 87.4 0.94 3.2E-05 39.1 5.9 49 333-390 44-95 (126)
9 2dgw_A Probable RNA-binding pr 87.1 1.4 4.7E-05 34.2 6.2 57 332-398 11-68 (91)
10 1wg5_A Heterogeneous nuclear r 86.5 1.3 4.6E-05 35.6 6.0 48 332-388 16-66 (104)
11 2dha_A FLJ20171 protein; RRM d 86.4 0.88 3E-05 38.9 5.1 50 332-390 24-79 (123)
12 2db1_A Heterogeneous nuclear r 86.4 1.2 4.2E-05 36.9 5.9 57 332-398 18-79 (118)
13 2hgn_A Heterogeneous nuclear r 86.4 0.61 2.1E-05 40.8 4.2 48 332-388 47-95 (139)
14 2ywk_A Putative RNA-binding pr 84.7 2.1 7E-05 33.3 6.1 50 333-391 18-69 (95)
15 4f25_A Polyadenylate-binding p 84.6 0.89 3E-05 37.4 4.2 48 334-390 8-56 (115)
16 2cpe_A RNA-binding protein EWS 84.5 1.9 6.5E-05 34.7 6.0 49 332-389 16-75 (113)
17 2err_A Ataxin-2-binding protei 84.2 1.8 6E-05 35.3 5.7 50 333-391 31-81 (109)
18 3d2w_A TAR DNA-binding protein 83.2 2.3 8E-05 33.5 5.9 48 331-390 11-59 (89)
19 1x4a_A Splicing factor, argini 82.6 2.8 9.6E-05 33.6 6.3 49 332-389 23-71 (109)
20 3ulh_A THO complex subunit 4; 82.3 2.7 9.3E-05 33.4 6.0 48 333-389 31-80 (107)
21 2dit_A HIV TAT specific factor 82.1 0.81 2.8E-05 37.5 2.9 58 332-390 16-75 (112)
22 2dnh_A Bruno-like 5, RNA bindi 81.7 3.2 0.00011 32.8 6.2 50 331-389 15-66 (105)
23 2e5j_A Methenyltetrahydrofolat 81.7 2 6.7E-05 33.9 4.9 47 332-389 20-66 (97)
24 2do0_A HnRNP M, heterogeneous 81.4 2.9 9.9E-05 33.6 5.9 47 333-388 17-65 (114)
25 2do4_A Squamous cell carcinoma 81.3 3.3 0.00011 32.6 6.1 49 332-389 18-68 (100)
26 1wi8_A EIF-4B, eukaryotic tran 81.1 2.7 9.1E-05 33.4 5.6 49 332-389 16-67 (104)
27 2kt5_A RNA and export factor-b 79.7 3.8 0.00013 33.7 6.2 48 333-389 37-86 (124)
28 3nmr_A Cugbp ELAV-like family 79.5 2.6 8.9E-05 35.4 5.3 48 333-389 97-146 (175)
29 2hgl_A HNRPF protein, heteroge 79.3 2.9 9.9E-05 36.3 5.6 47 333-388 46-97 (136)
30 1whw_A Hypothetical protein ri 79.3 4.2 0.00014 31.8 6.1 48 333-389 10-60 (99)
31 2cph_A RNA binding motif prote 79.1 3.7 0.00013 32.5 5.8 49 332-389 16-68 (107)
32 2ek1_A RNA-binding protein 12; 78.8 2.4 8.3E-05 32.8 4.5 50 331-389 15-67 (95)
33 1wel_A RNA-binding protein 12; 77.7 3.5 0.00012 34.0 5.5 50 332-390 26-78 (124)
34 3ns6_A Eukaryotic translation 77.4 1.8 6.2E-05 34.6 3.5 54 333-389 8-64 (100)
35 2cpf_A RNA binding motif prote 77.2 2.5 8.7E-05 33.0 4.2 47 333-388 7-59 (98)
36 2dgv_A HnRNP M, heterogeneous 77.1 4.6 0.00016 31.0 5.6 48 333-389 10-58 (92)
37 3v4m_A Splicing factor U2AF 65 76.4 2.3 7.8E-05 35.1 3.9 58 333-390 7-70 (105)
38 2cqg_A TDP-43, TAR DNA-binding 76.4 5.2 0.00018 31.6 5.9 47 333-388 17-66 (103)
39 1s79_A Lupus LA protein; RRM, 76.3 5.4 0.00018 32.5 6.1 47 333-388 13-61 (103)
40 2fy1_A RNA-binding motif prote 76.3 5.3 0.00018 32.9 6.2 47 333-388 9-57 (116)
41 3lqv_A PRE-mRNA branch site pr 76.2 5.1 0.00017 32.3 5.9 47 333-389 10-57 (115)
42 2dnl_A Cytoplasmic polyadenyla 76.2 3.5 0.00012 33.6 5.0 47 334-389 11-62 (114)
43 1x5t_A Splicing factor 3B subu 76.0 5.5 0.00019 30.9 5.9 48 333-389 7-58 (96)
44 1x5u_A Splicing factor 3B subu 75.7 6 0.00021 31.2 6.1 49 332-389 16-67 (105)
45 2dng_A Eukaryotic translation 75.7 4.7 0.00016 31.9 5.5 48 332-388 16-65 (103)
46 2f3j_A RNA and export factor b 75.4 4.5 0.00015 36.2 5.9 49 332-389 89-139 (177)
47 2cqc_A Arginine/serine-rich sp 75.4 4.9 0.00017 31.0 5.4 48 333-389 17-67 (95)
48 1x4h_A RNA-binding protein 28; 75.4 5.3 0.00018 31.8 5.7 49 333-390 17-68 (111)
49 2dhg_A TRNA selenocysteine ass 75.3 5.2 0.00018 31.5 5.6 48 333-389 11-61 (104)
50 2cpz_A CUG triplet repeat RNA- 75.2 5.3 0.00018 32.3 5.8 48 333-389 27-77 (115)
51 2xs2_A Deleted in azoospermia- 75.0 5.6 0.00019 31.3 5.8 56 333-398 11-68 (102)
52 2cq4_A RNA binding motif prote 74.8 6.2 0.00021 31.8 6.1 59 332-400 26-87 (114)
53 2d9p_A Polyadenylate-binding p 74.8 4.4 0.00015 32.0 5.1 47 333-388 17-64 (103)
54 1p27_B RNA-binding protein 8A; 74.8 6.6 0.00023 31.0 6.1 49 332-389 24-75 (106)
55 2la6_A RNA-binding protein FUS 74.7 6 0.0002 31.1 5.8 50 332-390 14-74 (99)
56 2dgo_A Cytotoxic granule-assoc 74.6 5.7 0.00019 32.0 5.8 47 333-388 17-66 (115)
57 1uaw_A Mouse-musashi-1; RNP-ty 74.6 5.3 0.00018 29.5 5.2 48 334-390 3-53 (77)
58 2rs2_A Musashi-1, RNA-binding 74.5 6.3 0.00021 32.0 6.1 48 332-388 26-76 (109)
59 2elu_A Zinc finger protein 406 73.9 0.92 3.2E-05 32.1 0.7 21 252-278 10-30 (37)
60 2cqp_A RNA-binding protein 12; 73.7 3.5 0.00012 32.2 4.2 49 332-389 16-67 (98)
61 4fxv_A ELAV-like protein 1; RN 73.3 7 0.00024 31.4 6.0 48 333-389 21-71 (99)
62 3md3_A Nuclear and cytoplasmic 73.3 7 0.00024 32.3 6.2 48 333-389 2-51 (166)
63 3s7r_A Heterogeneous nuclear r 73.2 8.3 0.00028 29.3 6.2 49 333-390 13-64 (87)
64 3bs9_A Nucleolysin TIA-1 isofo 73.1 7.3 0.00025 29.5 5.8 47 333-388 8-57 (87)
65 2dgs_A DAZ-associated protein 72.6 8.6 0.00029 30.0 6.3 47 333-388 12-61 (99)
66 3ucg_A Polyadenylate-binding p 72.5 8.5 0.00029 29.2 6.1 48 333-389 8-58 (89)
67 2lxi_A RNA-binding protein 10; 72.3 3.2 0.00011 32.7 3.7 48 333-389 3-54 (91)
68 2dgx_A KIAA0430 protein; RRM d 72.2 6.2 0.00021 31.1 5.4 47 333-389 11-62 (96)
69 2krb_A Eukaryotic translation 72.0 5.7 0.00019 30.1 4.9 53 333-389 3-57 (81)
70 2ghp_A U4/U6 snRNA-associated 71.6 6.7 0.00023 36.4 6.2 56 333-398 43-99 (292)
71 2fc9_A NCL protein; structure 71.3 5.4 0.00019 31.3 4.8 46 332-388 16-62 (101)
72 1x4b_A Heterogeneous nuclear r 71.1 8.6 0.00029 31.0 6.1 48 332-388 28-78 (116)
73 2dnz_A Probable RNA-binding pr 71.1 11 0.00036 29.1 6.4 48 333-389 7-57 (95)
74 2e5h_A Zinc finger CCHC-type a 70.9 8.5 0.00029 29.6 5.8 47 333-388 18-67 (94)
75 3beg_B Splicing factor, argini 70.7 8.8 0.0003 31.4 6.2 52 332-398 17-69 (115)
76 2cqd_A RNA-binding region cont 70.6 9.5 0.00032 30.8 6.3 47 333-388 19-68 (116)
77 2cq0_A Eukaryotic translation 70.3 5.5 0.00019 31.4 4.7 49 332-389 16-67 (103)
78 1h2v_Z 20 kDa nuclear CAP bind 70.3 9.1 0.00031 32.6 6.4 50 331-389 39-91 (156)
79 2j76_E EIF-4B, EIF4B, eukaryot 70.3 5.9 0.0002 31.4 4.9 56 332-397 20-78 (100)
80 4a8x_A RNA-binding protein wit 70.3 7.8 0.00027 29.3 5.4 50 332-390 5-58 (88)
81 1wf0_A TDP-43, TAR DNA-binding 70.3 5.9 0.0002 30.4 4.7 44 334-389 8-52 (88)
82 1x4c_A Splicing factor, argini 70.1 9 0.00031 30.8 6.0 43 332-388 16-59 (108)
83 1x5o_A RNA binding motif, sing 70.0 8.5 0.00029 30.9 5.8 49 331-388 25-75 (114)
84 2x1f_A MRNA 3'-END-processing 69.6 11 0.00036 29.4 6.2 48 333-389 4-54 (96)
85 3s8s_A Histone-lysine N-methyl 69.6 8.2 0.00028 31.7 5.7 48 333-389 8-58 (110)
86 2voo_A Lupus LA protein; RNA-b 69.4 8.2 0.00028 34.9 6.2 50 332-390 110-161 (193)
87 3ex7_B RNA-binding protein 8A; 69.4 8.4 0.00029 31.5 5.7 50 332-390 23-75 (126)
88 2jwn_A Embryonic polyadenylate 69.3 8.7 0.0003 31.3 5.8 51 331-390 36-89 (124)
89 1x4e_A RNA binding motif, sing 69.2 7.9 0.00027 29.3 5.2 56 333-398 7-65 (85)
90 3mdf_A Peptidyl-prolyl CIS-tra 69.1 8.5 0.00029 28.9 5.3 48 333-389 9-59 (85)
91 2mss_A Protein (musashi1); RNA 69.0 9.4 0.00032 28.2 5.5 47 334-389 2-51 (75)
92 3nmr_A Cugbp ELAV-like family 68.8 7.3 0.00025 32.6 5.4 48 334-390 6-58 (175)
93 2dgp_A Bruno-like 4, RNA bindi 68.7 6.6 0.00023 31.0 4.8 48 333-389 15-65 (106)
94 1x5s_A Cold-inducible RNA-bind 68.6 8.8 0.0003 30.1 5.5 48 333-389 14-64 (102)
95 2dnm_A SRP46 splicing factor; 68.5 11 0.00036 29.7 6.0 50 333-391 15-67 (103)
96 2lkz_A RNA-binding protein 5; 68.3 8.2 0.00028 31.2 5.4 49 333-390 11-64 (95)
97 4f02_A Polyadenylate-binding p 67.9 6.1 0.00021 35.4 5.0 49 333-390 105-154 (213)
98 2dh8_A DAZ-associated protein 67.8 7 0.00024 30.9 4.8 57 333-399 18-77 (105)
99 1rk8_A CG8781-PA, CG8781-PA pr 67.3 8.6 0.0003 33.3 5.7 49 331-388 72-123 (165)
100 1oo0_B CG8781-PA, drosophila Y 67.0 12 0.00042 29.7 6.2 48 333-389 28-78 (110)
101 2dnq_A RNA-binding protein 4B; 66.9 10 0.00036 29.1 5.5 42 333-388 10-51 (90)
102 2fc8_A NCL protein; structure 66.6 7.7 0.00026 30.4 4.8 45 333-388 17-63 (102)
103 2wbr_A GW182, gawky, LD47780P; 66.3 8 0.00027 32.2 5.0 75 335-442 11-85 (89)
104 2ki2_A SS-DNA binding protein 65.9 11 0.00036 28.9 5.4 48 334-390 4-54 (90)
105 1fxl_A Paraneoplastic encephal 65.8 12 0.00041 30.8 6.1 47 333-388 4-53 (167)
106 2hvz_A Splicing factor, argini 65.0 11 0.00038 29.5 5.4 45 334-390 3-48 (101)
107 1why_A Hypothetical protein ri 64.8 12 0.0004 29.2 5.5 44 333-389 19-63 (97)
108 2cpi_A CCR4-NOT transcription 64.7 9.7 0.00033 30.8 5.2 48 333-389 17-73 (111)
109 2cqb_A Peptidyl-prolyl CIS-tra 64.5 10 0.00035 29.7 5.1 48 333-389 14-64 (102)
110 2khc_A Testis-specific RNP-typ 64.2 13 0.00044 30.0 5.8 49 333-390 42-93 (118)
111 2kn4_A Immunoglobulin G-bindin 64.1 25 0.00086 29.6 7.9 50 331-389 70-122 (158)
112 2kxn_B Transformer-2 protein h 63.8 8.7 0.0003 32.4 4.9 48 333-389 48-98 (129)
113 2m2b_A RNA-binding protein 10; 63.6 8.4 0.00029 32.1 4.7 48 333-389 25-77 (131)
114 3md1_A Nuclear and cytoplasmic 63.5 15 0.00052 27.4 5.8 48 333-389 3-53 (83)
115 1wf1_A RNA-binding protein RAL 63.4 9 0.00031 30.7 4.7 45 333-390 29-73 (110)
116 1p1t_A Cleavage stimulation fa 63.3 8.7 0.0003 30.1 4.5 48 333-389 10-60 (104)
117 3sde_A Paraspeckle component 1 63.2 9.1 0.00031 35.4 5.3 51 333-392 98-150 (261)
118 2div_A TRNA selenocysteine ass 63.0 11 0.00037 29.3 5.0 48 333-389 11-62 (99)
119 2nlw_A Eukaryotic translation 62.3 14 0.00046 29.6 5.6 55 333-391 17-73 (105)
120 2xnq_A Nuclear polyadenylated 62.0 15 0.00052 29.0 5.8 43 334-389 25-67 (97)
121 2ku7_A MLL1 PHD3-CYP33 RRM chi 61.9 20 0.00067 29.4 6.6 48 333-389 65-115 (140)
122 1whx_A Hypothetical protein ri 61.5 15 0.0005 30.0 5.7 45 333-390 12-57 (111)
123 1x4g_A Nucleolysin TIAR; struc 60.8 13 0.00044 29.7 5.2 45 333-390 27-72 (109)
124 1fjc_A Nucleolin RBD2, protein 60.2 7.6 0.00026 30.1 3.6 46 333-389 18-63 (96)
125 1iqt_A AUF1, heterogeneous nuc 60.0 11 0.00037 27.7 4.3 55 334-398 2-59 (75)
126 2ytc_A PRE-mRNA-splicing facto 59.7 16 0.00056 27.4 5.3 43 333-388 14-57 (85)
127 2jvo_A Nucleolar protein 3; nu 59.6 13 0.00043 30.3 5.0 43 332-389 32-75 (108)
128 2jvr_A Nucleolar protein 3; RN 59.1 14 0.00047 30.9 5.2 47 332-388 29-76 (111)
129 1l3k_A Heterogeneous nuclear r 59.0 18 0.0006 30.9 6.1 49 332-389 105-156 (196)
130 1b7f_A Protein (SXL-lethal pro 58.7 21 0.00073 29.5 6.4 49 332-389 90-141 (168)
131 1u6f_A Tcubp1, RNA-binding pro 58.6 14 0.00048 30.7 5.2 48 333-389 44-94 (139)
132 2la4_A Nuclear and cytoplasmic 58.3 16 0.00056 28.5 5.3 45 333-390 29-74 (101)
133 2kvi_A Nuclear polyadenylated 58.2 16 0.00054 28.6 5.2 42 334-388 13-54 (96)
134 2pe8_A Splicing factor 45; RRM 58.1 26 0.00089 28.7 6.7 85 333-442 10-98 (105)
135 2qfj_A FBP-interacting repress 57.9 20 0.00068 31.1 6.3 48 333-389 30-80 (216)
136 2cjk_A Nuclear polyadenylated 57.8 21 0.0007 29.7 6.1 48 333-389 89-139 (167)
137 2i2y_A Fusion protein consists 57.7 15 0.00053 30.9 5.4 46 332-389 74-120 (150)
138 3tyt_A Heterogeneous nuclear r 57.6 17 0.00057 33.0 6.0 47 333-388 125-174 (205)
139 2jrs_A RNA-binding protein 39; 57.5 16 0.00054 29.6 5.2 48 333-389 28-78 (108)
140 2cpd_A Apobec-1 stimulating pr 57.3 19 0.00063 28.2 5.5 45 333-389 17-61 (99)
141 2dis_A Unnamed protein product 57.3 20 0.00069 28.3 5.7 46 334-388 11-61 (109)
142 1nh2_C Transcription initiatio 56.7 1.9 6.6E-05 35.6 -0.4 16 243-259 43-58 (79)
143 2g4b_A Splicing factor U2AF 65 56.3 24 0.00081 29.4 6.3 52 331-391 94-148 (172)
144 2qfj_A FBP-interacting repress 56.1 19 0.00065 31.2 5.8 47 333-388 127-176 (216)
145 3s6e_A RNA-binding protein 39; 56.1 13 0.00045 31.3 4.6 91 333-446 9-101 (114)
146 3smz_A Protein raver-1, ribonu 56.0 18 0.00061 33.3 5.9 51 332-390 185-237 (284)
147 2cpx_A Hypothetical protein FL 55.9 13 0.00046 29.6 4.5 47 332-389 26-77 (115)
148 2ghp_A U4/U6 snRNA-associated 55.9 20 0.00069 33.1 6.3 52 330-389 209-264 (292)
149 3p5t_L Cleavage and polyadenyl 55.4 12 0.00041 28.9 4.0 47 334-389 4-55 (90)
150 1l3k_A Heterogeneous nuclear r 54.4 24 0.00082 30.1 6.1 47 333-388 15-64 (196)
151 2cpj_A Non-POU domain-containi 53.8 22 0.00077 27.7 5.4 45 333-390 17-62 (99)
152 2cjk_A Nuclear polyadenylated 53.7 21 0.00073 29.6 5.6 49 333-390 5-56 (167)
153 3pgw_S U1-70K; protein-RNA com 53.7 14 0.00049 37.8 5.3 50 333-391 104-156 (437)
154 2cq1_A PTB-like protein L; RRM 53.5 21 0.00073 29.1 5.4 44 333-389 17-61 (101)
155 1fxl_A Paraneoplastic encephal 53.1 30 0.001 28.3 6.4 48 333-389 90-140 (167)
156 2yh0_A Splicing factor U2AF 65 53.0 24 0.00083 30.1 5.9 52 331-391 114-168 (198)
157 1nu4_A U1A RNA binding domain; 52.6 9.5 0.00032 29.5 3.0 48 333-389 10-61 (97)
158 1b7f_A Protein (SXL-lethal pro 52.5 20 0.00067 29.7 5.1 48 333-389 5-55 (168)
159 2hzc_A Splicing factor U2AF 65 52.5 22 0.00075 26.7 5.0 44 333-389 8-63 (87)
160 2ad9_A Polypyrimidine tract-bi 52.4 18 0.00062 30.9 4.9 46 332-390 32-78 (119)
161 1fje_B Nucleolin RBD12, protei 52.3 22 0.00075 29.9 5.5 47 332-389 100-146 (175)
162 1wex_A Hypothetical protein (r 52.3 26 0.0009 28.6 5.8 43 333-388 17-60 (104)
163 2dgu_A Heterogeneous nuclear r 52.3 18 0.00062 28.5 4.7 42 333-389 13-55 (103)
164 2dgt_A RNA-binding protein 30; 51.5 27 0.00093 26.8 5.5 41 333-388 12-53 (92)
165 2e5g_A U6 snRNA-specific termi 51.4 38 0.0013 26.1 6.4 53 334-398 11-63 (94)
166 2d9o_A DNAJ (HSP40) homolog, s 51.3 17 0.00059 29.8 4.5 38 350-390 27-65 (100)
167 1jmt_A Splicing factor U2AF 35 51.0 16 0.00054 29.8 4.2 36 356-391 42-80 (104)
168 1sjq_A Polypyrimidine tract-bi 50.4 18 0.0006 30.4 4.5 45 332-389 17-62 (105)
169 2lea_A Serine/arginine-rich sp 49.8 16 0.00054 30.9 4.2 48 332-388 48-98 (135)
170 3pgw_A U1-A; protein-RNA compl 48.1 24 0.00081 32.4 5.4 46 332-389 208-254 (282)
171 2cqh_A IGF-II mRNA-binding pro 47.8 12 0.00043 28.8 3.0 43 334-389 11-54 (93)
172 3ue2_A Poly(U)-binding-splicin 47.5 19 0.00065 30.4 4.3 87 333-444 22-115 (118)
173 2m0f_A Zinc finger and BTB dom 46.7 9.2 0.00031 22.0 1.6 23 250-278 1-23 (29)
174 2e44_A Insulin-like growth fac 46.4 38 0.0013 26.0 5.6 47 332-389 16-64 (96)
175 3q2s_C Cleavage and polyadenyl 46.2 23 0.00077 32.9 4.9 56 333-398 70-130 (229)
176 2kvh_A Zinc finger and BTB dom 46.1 10 0.00035 21.9 1.8 22 250-277 2-23 (27)
177 2dnp_A RNA-binding protein 14; 44.7 32 0.0011 26.3 4.9 42 333-389 11-53 (90)
178 3n9u_C Cleavage and polyadenyl 44.5 31 0.0011 30.0 5.4 48 333-389 57-109 (156)
179 3md3_A Nuclear and cytoplasmic 44.3 40 0.0014 27.6 5.7 48 333-389 89-139 (166)
180 2m0d_A Zinc finger and BTB dom 43.8 11 0.00039 21.7 1.7 23 250-278 2-24 (30)
181 1qm9_A Polypyrimidine tract-bi 43.5 27 0.00091 30.2 4.7 54 333-398 5-59 (198)
182 3i1m_R 30S ribosomal protein S 43.3 19 0.00064 29.3 3.4 44 252-297 9-61 (75)
183 1p7a_A BF3, BKLF, kruppel-like 42.2 13 0.00043 23.2 1.8 24 249-278 9-32 (37)
184 2adc_A Polypyrimidine tract-bi 42.0 31 0.0011 31.1 5.1 46 333-389 36-82 (229)
185 3pq1_A Poly(A) RNA polymerase; 41.7 17 0.00058 38.2 3.7 36 353-390 65-100 (464)
186 3egn_A RNA-binding protein 40; 41.6 30 0.001 28.9 4.6 48 333-389 47-102 (143)
187 3r27_A HnRNP L, heterogeneous 41.3 50 0.0017 27.4 5.8 44 333-389 23-67 (100)
188 1wg1_A KIAA1579 protein, homol 40.1 33 0.0011 26.3 4.3 42 334-389 8-50 (88)
189 2els_A Zinc finger protein 406 39.5 15 0.0005 22.8 1.8 24 249-278 7-30 (36)
190 1fj7_A Nucleolin RBD1, protein 39.5 10 0.00034 29.8 1.2 57 332-398 18-76 (101)
191 1x4d_A Matrin 3; structural ge 38.8 27 0.00094 28.7 3.9 56 332-404 16-73 (102)
192 2kvf_A Zinc finger and BTB dom 38.8 16 0.00053 21.2 1.8 23 250-278 2-24 (28)
193 4f02_A Polyadenylate-binding p 38.7 40 0.0014 30.0 5.2 47 334-389 18-67 (213)
194 1x5p_A Negative elongation fac 38.7 33 0.0011 26.7 4.2 35 352-389 25-59 (97)
195 2lcw_A RNA-binding protein FUS 44.8 6.5 0.00022 31.8 0.0 49 334-391 10-69 (116)
196 3mjh_B Early endosome antigen 38.3 14 0.00047 26.0 1.6 20 251-276 5-24 (34)
197 1sjr_A Polypyrimidine tract-bi 37.5 37 0.0013 30.8 4.8 46 334-389 49-94 (164)
198 2vqe_R 30S ribosomal protein S 37.1 26 0.00089 29.2 3.4 44 251-296 19-71 (88)
199 2go8_A Hypothetical protein YQ 36.1 53 0.0018 28.4 5.4 81 331-414 11-92 (122)
200 2elr_A Zinc finger protein 406 35.9 17 0.00056 22.4 1.6 24 249-278 7-30 (36)
201 2elt_A Zinc finger protein 406 35.7 18 0.0006 22.3 1.7 23 249-277 7-29 (36)
202 1rik_A E6APC1 peptide; E6-bind 35.5 19 0.00064 20.8 1.8 22 251-278 2-23 (29)
203 2elp_A Zinc finger protein 406 35.4 20 0.00069 22.3 2.0 23 249-277 7-30 (37)
204 2yu5_A Zinc finger protein 473 35.1 20 0.00069 23.3 2.0 25 248-278 9-33 (44)
205 1x4f_A Matrin 3; structural ge 35.0 46 0.0016 28.0 4.7 47 332-390 26-73 (112)
206 2eoy_A Zinc finger protein 473 34.2 22 0.00075 23.4 2.1 24 249-278 10-33 (46)
207 2elx_A Zinc finger protein 406 34.1 21 0.00071 21.7 1.9 24 249-278 5-28 (35)
208 1qm9_A Polypyrimidine tract-bi 34.0 51 0.0018 28.4 5.0 46 332-389 121-168 (198)
209 2kvg_A Zinc finger and BTB dom 34.0 14 0.00049 21.6 1.0 22 250-277 2-23 (27)
210 1klr_A Zinc finger Y-chromosom 33.9 20 0.00069 20.6 1.7 22 251-278 2-23 (30)
211 1srk_A Zinc finger protein ZFP 33.9 22 0.00074 21.8 1.9 24 249-278 5-28 (35)
212 2m0e_A Zinc finger and BTB dom 33.8 18 0.00062 20.6 1.5 21 251-277 2-22 (29)
213 1ard_A Yeast transcription fac 33.1 18 0.0006 20.8 1.3 21 251-277 2-22 (29)
214 2eou_A Zinc finger protein 473 33.1 19 0.00066 23.5 1.7 23 249-277 10-32 (44)
215 3pgw_A U1-A; protein-RNA compl 32.9 56 0.0019 29.9 5.3 54 333-397 11-69 (282)
216 2em7_A Zinc finger protein 224 32.0 24 0.00083 23.1 2.0 25 248-278 9-33 (46)
217 2enh_A Zinc finger protein 28 32.0 22 0.00076 23.4 1.8 24 249-278 10-33 (46)
218 2em2_A Zinc finger protein 28 32.0 23 0.0008 23.3 2.0 25 248-278 9-33 (46)
219 2elq_A Zinc finger protein 406 32.0 24 0.00083 21.8 1.9 24 249-278 7-30 (36)
220 2eoh_A Zinc finger protein 28 31.3 23 0.0008 23.3 1.9 24 249-278 10-33 (46)
221 3smz_A Protein raver-1, ribonu 31.2 62 0.0021 29.6 5.3 45 333-390 24-68 (284)
222 2ytp_A Zinc finger protein 484 31.2 25 0.00086 23.1 2.0 25 248-278 9-33 (46)
223 2em8_A Zinc finger protein 224 30.4 26 0.00089 23.1 2.0 25 248-278 9-33 (46)
224 2e5i_A Heterogeneous nuclear r 30.3 73 0.0025 27.2 5.3 43 334-389 28-72 (124)
225 2elv_A Zinc finger protein 406 30.2 27 0.00091 21.6 1.9 24 249-278 7-30 (36)
226 2eon_A ZFP-95, zinc finger pro 30.1 21 0.00073 23.6 1.5 24 249-278 10-33 (46)
227 2adc_A Polypyrimidine tract-bi 30.1 84 0.0029 28.2 5.9 45 332-388 152-198 (229)
228 2ytf_A Zinc finger protein 268 30.1 26 0.0009 22.9 2.0 25 248-278 9-33 (46)
229 2emi_A Zinc finger protein 484 30.0 27 0.00092 22.9 2.0 24 249-278 10-33 (46)
230 2epv_A Zinc finger protein 268 29.8 28 0.00096 22.7 2.0 24 249-278 10-33 (44)
231 2epx_A Zinc finger protein 28 29.6 29 0.001 22.7 2.1 24 249-278 10-33 (47)
232 2emb_A Zinc finger protein 473 29.2 28 0.00094 22.6 1.9 24 249-278 10-33 (44)
233 3tyt_A Heterogeneous nuclear r 28.8 92 0.0032 28.0 6.0 48 333-391 6-54 (205)
234 2j8a_A Histone-lysine N-methyl 28.7 73 0.0025 28.6 5.1 37 352-388 18-57 (136)
235 2eq0_A Zinc finger protein 347 28.6 30 0.001 22.7 2.0 25 248-278 9-33 (46)
236 2elz_A Zinc finger protein 224 28.3 27 0.00092 23.0 1.8 25 248-278 9-33 (46)
237 2enf_A Zinc finger protein 347 28.1 29 0.00098 22.8 1.9 24 249-278 10-33 (46)
238 1paa_A Yeast transcription fac 28.0 24 0.00081 20.5 1.3 20 251-276 2-21 (30)
239 2epz_A Zinc finger protein 28 27.9 29 0.00099 22.7 1.9 24 249-278 10-33 (46)
240 2en3_A ZFP-95, zinc finger pro 27.8 33 0.0011 22.5 2.1 23 249-277 10-32 (46)
241 2enc_A Zinc finger protein 224 27.6 29 0.00098 22.8 1.8 25 248-278 9-33 (46)
242 2ep0_A Zinc finger protein 28 27.5 31 0.001 22.6 1.9 25 248-278 9-33 (46)
243 1znf_A 31ST zinc finger from X 27.3 25 0.00084 19.9 1.3 22 251-278 1-22 (27)
244 2emg_A Zinc finger protein 484 27.2 29 0.00098 22.8 1.7 24 249-278 10-33 (46)
245 2yts_A Zinc finger protein 484 27.1 31 0.001 22.5 1.9 24 249-278 10-33 (46)
246 2elo_A Zinc finger protein 406 27.1 22 0.00074 22.1 1.0 24 249-278 7-30 (37)
247 3zzy_A Polypyrimidine tract-bi 26.9 79 0.0027 27.5 4.9 44 334-389 31-76 (130)
248 1njq_A Superman protein; zinc- 26.8 30 0.001 21.9 1.8 24 249-278 4-27 (39)
249 2hl7_A Cytochrome C-type bioge 26.6 18 0.00063 29.8 0.8 11 250-260 25-35 (84)
250 2el6_A Zinc finger protein 268 26.4 33 0.0011 22.5 2.0 24 249-278 10-33 (46)
251 2em9_A Zinc finger protein 224 26.4 33 0.0011 22.3 2.0 24 249-278 10-33 (46)
252 2ept_A Zinc finger protein 32; 26.4 33 0.0011 21.8 1.9 24 249-278 8-31 (41)
253 2yti_A Zinc finger protein 347 26.3 29 0.001 22.7 1.6 24 249-278 10-33 (46)
254 2em4_A Zinc finger protein 28 26.3 34 0.0012 22.4 2.0 24 249-278 10-33 (46)
255 1nvp_C Transcription initiatio 26.3 10 0.00035 31.1 -0.8 16 243-259 41-56 (76)
256 2em3_A Zinc finger protein 28 26.2 35 0.0012 22.3 2.0 24 249-278 10-33 (46)
257 2yrj_A Zinc finger protein 473 26.2 36 0.0012 22.2 2.1 24 249-278 10-33 (46)
258 2ytb_A Zinc finger protein 32; 26.1 32 0.0011 21.9 1.8 24 249-278 9-32 (42)
259 2eow_A Zinc finger protein 347 26.1 35 0.0012 22.2 2.0 24 249-278 10-33 (46)
260 2eoz_A Zinc finger protein 473 25.9 26 0.0009 23.0 1.4 23 249-277 10-32 (46)
261 2ely_A Zinc finger protein 224 25.9 36 0.0012 22.3 2.1 24 249-278 10-33 (46)
262 2lvr_A Zinc finger and BTB dom 31.8 14 0.00049 21.4 0.0 23 250-278 2-24 (30)
263 2ytq_A Zinc finger protein 268 25.6 31 0.0011 22.7 1.7 25 248-278 9-33 (46)
264 2eom_A ZFP-95, zinc finger pro 25.4 37 0.0013 22.4 2.0 24 249-278 10-33 (46)
265 2ysp_A Zinc finger protein 224 25.4 28 0.00096 22.8 1.4 24 249-278 10-33 (46)
266 2bz2_A Negative elongation fac 25.3 59 0.002 27.0 3.7 34 352-389 49-83 (121)
267 2en9_A Zinc finger protein 28 25.3 30 0.001 22.8 1.5 24 249-278 10-33 (46)
268 2elm_A Zinc finger protein 406 25.2 31 0.0011 21.7 1.6 22 249-276 7-28 (37)
269 2emf_A Zinc finger protein 484 25.1 35 0.0012 22.4 1.9 24 249-278 10-33 (46)
270 2en2_A B-cell lymphoma 6 prote 25.1 33 0.0011 21.9 1.7 24 249-278 9-32 (42)
271 2emz_A ZFP-95, zinc finger pro 25.1 35 0.0012 22.4 1.9 23 249-277 10-32 (46)
272 2em5_A ZFP-95, zinc finger pro 25.0 37 0.0013 22.3 2.0 24 249-278 10-33 (46)
273 2ene_A Zinc finger protein 347 25.0 34 0.0012 22.3 1.8 24 249-278 10-33 (46)
274 2eme_A Zinc finger protein 473 25.0 35 0.0012 22.2 1.9 24 249-278 10-33 (46)
275 2g4b_A Splicing factor U2AF 65 24.9 96 0.0033 25.6 5.0 44 333-389 6-61 (172)
276 2cq2_A Hypothetical protein LO 24.9 62 0.0021 27.4 3.8 35 352-389 39-73 (114)
277 2eof_A Zinc finger protein 268 24.9 35 0.0012 21.9 1.8 24 249-278 10-33 (44)
278 1lko_A Rubrerythrin all-iron(I 24.8 28 0.00096 31.8 1.8 30 228-258 133-162 (191)
279 3pwf_A Rubrerythrin; non heme 24.8 42 0.0014 30.4 2.9 28 228-258 118-145 (170)
280 3uk3_C Zinc finger protein 217 24.7 36 0.0012 23.1 1.9 23 249-277 30-52 (57)
281 2eq1_A Zinc finger protein 347 24.6 34 0.0012 22.4 1.7 24 249-278 10-33 (46)
282 2el5_A Zinc finger protein 268 24.6 36 0.0012 21.7 1.8 24 249-278 8-31 (42)
283 2ep3_A Zinc finger protein 484 24.6 36 0.0012 22.2 1.9 24 249-278 10-33 (46)
284 2epc_A Zinc finger protein 32; 24.4 36 0.0012 21.6 1.8 24 249-278 9-32 (42)
285 2kw0_A CCMH protein; oxidoredu 24.3 18 0.0006 30.4 0.3 11 250-260 22-32 (90)
286 2a3j_A U1 small nuclear ribonu 24.1 66 0.0022 27.3 3.8 47 333-389 31-82 (127)
287 2ytm_A Zinc finger protein 28 24.1 31 0.0011 22.8 1.4 24 248-277 9-32 (46)
288 2eor_A Zinc finger protein 224 24.0 35 0.0012 22.3 1.7 23 249-277 10-32 (46)
289 2en7_A Zinc finger protein 268 23.9 33 0.0011 22.0 1.5 24 249-278 10-33 (44)
290 2drp_A Protein (tramtrack DNA- 23.9 29 0.00099 24.4 1.3 23 249-277 8-30 (66)
291 2yu8_A Zinc finger protein 347 23.5 44 0.0015 21.8 2.2 23 249-277 10-32 (46)
292 2emj_A Zinc finger protein 28 23.5 43 0.0015 21.9 2.1 24 249-278 10-33 (46)
293 2em6_A Zinc finger protein 224 23.5 38 0.0013 22.2 1.8 24 249-278 10-33 (46)
294 2emm_A ZFP-95, zinc finger pro 23.3 41 0.0014 21.9 1.9 24 249-278 10-33 (46)
295 2lvu_A Zinc finger and BTB dom 29.0 17 0.00059 20.7 0.0 21 251-277 2-22 (26)
296 2yth_A Zinc finger protein 224 23.3 41 0.0014 22.1 1.9 24 249-278 10-33 (46)
297 2eop_A Zinc finger protein 268 23.1 37 0.0013 22.1 1.7 24 249-278 10-33 (46)
298 1rim_A E6APC2 peptide; E6-bind 23.1 37 0.0013 20.9 1.6 22 251-278 2-23 (33)
299 2ytn_A Zinc finger protein 347 23.1 40 0.0014 22.0 1.8 24 249-278 10-33 (46)
300 3iuf_A Zinc finger protein UBI 23.0 37 0.0013 23.1 1.7 24 249-278 5-28 (48)
301 2lvt_A Zinc finger and BTB dom 28.7 18 0.0006 21.1 0.0 22 251-278 2-23 (29)
302 2em0_A Zinc finger protein 224 22.9 44 0.0015 21.8 2.0 24 249-278 10-33 (46)
303 2en8_A Zinc finger protein 224 22.9 44 0.0015 21.7 2.0 24 249-278 10-33 (46)
304 3sde_A Paraspeckle component 1 22.9 96 0.0033 28.5 5.0 46 333-390 24-69 (261)
305 2ytj_A Zinc finger protein 484 22.9 40 0.0014 22.0 1.8 24 249-278 10-33 (46)
306 2ytg_A ZFP-95, zinc finger pro 22.8 44 0.0015 21.8 2.0 24 249-278 10-33 (46)
307 2ytk_A Zinc finger protein 347 22.7 43 0.0015 21.8 2.0 24 249-278 10-33 (46)
308 2yte_A Zinc finger protein 473 22.6 37 0.0013 21.6 1.5 24 249-278 8-31 (42)
309 2yrm_A B-cell lymphoma 6 prote 22.5 43 0.0015 21.8 1.9 24 249-278 8-31 (43)
310 2yto_A Zinc finger protein 484 22.3 42 0.0015 22.0 1.9 24 249-278 10-33 (46)
311 2eos_A B-cell lymphoma 6 prote 22.3 44 0.0015 21.4 1.9 24 249-278 9-32 (42)
312 2ep2_A Zinc finger protein 484 22.2 43 0.0015 21.8 1.9 24 249-278 10-33 (46)
313 2eq2_A Zinc finger protein 347 21.9 37 0.0013 22.2 1.5 24 249-278 10-33 (46)
314 2yso_A ZFP-95, zinc finger pro 21.8 45 0.0015 21.7 1.9 24 249-278 10-33 (46)
315 2emh_A Zinc finger protein 484 21.7 43 0.0015 21.8 1.8 23 249-277 10-32 (46)
316 2eox_A Zinc finger protein 473 21.7 35 0.0012 22.1 1.3 24 249-278 10-33 (44)
317 2ytt_A Zinc finger protein 473 21.7 35 0.0012 22.4 1.3 24 249-278 10-33 (46)
318 2epw_A Zinc finger protein 268 21.6 47 0.0016 21.6 1.9 24 249-278 10-33 (46)
319 2eov_A Zinc finger protein 484 21.6 39 0.0013 22.0 1.5 24 249-278 10-33 (46)
320 1x6e_A Zinc finger protein 24; 21.5 43 0.0015 24.2 1.9 24 249-278 12-35 (72)
321 2emx_A Zinc finger protein 268 21.4 46 0.0016 21.5 1.9 24 249-278 8-31 (44)
322 1wir_A Protein arginine N-meth 21.3 40 0.0014 29.5 2.0 35 240-280 4-38 (121)
323 2eq4_A Zinc finger protein 224 21.1 46 0.0016 21.6 1.8 24 249-278 10-33 (46)
324 2epu_A Zinc finger protein 32; 21.1 37 0.0013 22.2 1.3 24 249-278 10-33 (45)
325 2ytd_A Zinc finger protein 473 21.0 51 0.0017 21.5 2.0 24 249-278 10-33 (46)
326 1rm1_C Transcription initiatio 20.9 23 0.0008 35.3 0.4 13 243-256 250-262 (286)
327 1bbo_A Human enhancer-binding 20.9 45 0.0015 22.6 1.8 25 249-279 27-51 (57)
328 2ep1_A Zinc finger protein 484 20.4 45 0.0015 21.7 1.6 24 249-278 10-33 (46)
329 2eoq_A Zinc finger protein 224 20.4 46 0.0016 21.7 1.7 24 249-278 10-33 (46)
330 2en6_A Zinc finger protein 268 20.3 37 0.0013 22.2 1.2 24 249-278 10-33 (46)
331 2eml_A Zinc finger protein 28 20.2 49 0.0017 21.6 1.8 24 249-278 10-33 (46)
332 2emy_A Zinc finger protein 268 20.1 49 0.0017 21.6 1.8 24 249-278 10-33 (46)
333 3tht_A Alkylated DNA repair pr 20.1 1.4E+02 0.0049 29.8 6.0 40 350-392 30-69 (345)
No 1
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1.4e-46 Score=348.00 Aligned_cols=127 Identities=19% Similarity=0.357 Sum_probs=117.5
Q ss_pred CCCCceeeeCceEEEeecccccCCCCcccccChHHHHHHh--hccCcceeEeccCCCCCcceEEEEeCCCchhhHHHHHH
Q 012025 322 TEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYF--ILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERL 399 (472)
Q Consensus 322 ~~kDdliVWPWMGIIvNt~te~dddgk~~G~S~~eLkd~f--sgF~P~KVr~lyg~~GH~G~aVVeF~kdwsGF~nA~rL 399 (472)
++++++|||||||||+||+|+.++||+++|||+++|+++| ++|+|++|+|||+++||+|+|||+|++||+||+||++|
T Consensus 3 ~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 3 CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp ---CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred CCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence 6789999999999999999988888999999999999977 89999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChhhhhhhcccccccCCCcceeeeEecccccccc---cCccCCCCccccc
Q 012025 400 HKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDV---FNQHCHGSSFSPL 455 (472)
Q Consensus 400 ekhFe~qg~GRkDW~~~~r~~~~~pG~~~~LYGWlAradDyds---~n~hs~~k~~LK~ 455 (472)
|+||+.++|||+||. .++. .+++|||||||+|||++ +.+|+++.++||-
T Consensus 83 ek~Fe~~~~GK~dW~--~~~~-----~~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKT 134 (172)
T 4e8u_A 83 DKAYTVDGHGKKDWL--KKDG-----PKLGLYGWIARADDYNGNNIIGENLRKTGDLKT 134 (172)
T ss_dssp HHHHHHTTCSHHHHT--CSSS-----CCCSCEEEECBHHHHHSSSHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCCHHHHh--hCCC-----CCCceEEEecccccccCCChHHHHHHHcCCccc
Confidence 999999999999998 5544 48999999999999998 7789999999996
No 2
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.75 E-value=0.25 Score=40.34 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=43.8
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCC-cceEEEEeCCCchhhHHHHH
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFESSAGGYLEAER 398 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH-~G~aVVeF~kdwsGF~nA~r 398 (472)
-.+.|-|++..- +.++|++.|+.|.++.|+.++.+.|. +|++.|+|...- --..|+.
T Consensus 16 ~~l~V~nLp~~~---------te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~-~a~~Al~ 73 (102)
T 1wez_A 16 HCVHMRGLPYRA---------TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHE-DAVAAMA 73 (102)
T ss_dssp CEEEEESCCTTC---------CHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSH-HHHHHHT
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHH-HHHHHHH
Confidence 457788987533 56889999999999999999998775 899999998643 3444443
No 3
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.00 E-value=0.69 Score=36.78 Aligned_cols=49 Identities=16% Similarity=0.384 Sum_probs=39.2
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kd 389 (472)
-.+.|-|++.. .+.++|++.|+.|.++ .++......+++|++.|+|..-
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~ 65 (103)
T 2cq3_A 16 KRLHVSNIPFR---------FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS 65 (103)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCH
Confidence 34668898752 3577899999999887 6778888888899999999873
No 4
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.73 E-value=0.81 Score=38.23 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=40.2
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCC-cceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH-~G~aVVeF~kd 389 (472)
..+.|-|++..- +.++|++.|+.|....|++++++.|. +|++.|+|...
T Consensus 17 ~~v~V~nLp~~~---------te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~ 66 (109)
T 2dnn_A 17 LYVSVHGMPFSA---------MENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSP 66 (109)
T ss_dssp HEEEEECCCSSC---------CHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSH
T ss_pred CEEEEeCCCCCC---------CHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCH
Confidence 468899987533 46789999999977789999988875 89999999873
No 5
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.73 E-value=0.86 Score=37.35 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=37.8
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce--eEeccCCCC-CcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQG-HRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K--Vr~lyg~~G-H~G~aVVeF~k 388 (472)
.+.|-|++... +.++|++.|..|..+. |+.++.+.| .+|++.|+|..
T Consensus 17 ~l~V~nLp~~~---------t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~ 66 (114)
T 2cpy_A 17 CAHITNIPFSI---------TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKN 66 (114)
T ss_dssp EEEEESCCTTS---------CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSS
T ss_pred EEEEeCcCCcC---------CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECC
Confidence 35688987533 4678999999998875 899988877 48999999975
No 6
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.59 E-value=0.97 Score=35.90 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=38.3
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++......+++|++.|+|...
T Consensus 17 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~ 65 (103)
T 2cqi_A 17 TLYVGNLSRD---------VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH 65 (103)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSH
T ss_pred EEEEeCCCcc---------CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCH
Confidence 4668888742 3578899999999987 4777887778899999999853
No 7
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=87.46 E-value=1 Score=36.47 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=42.6
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCc----ceeEeccCCCC-CcceEEEEeCCCchhhHHHHHH
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA----VRARHSYGPQG-HRGMSVLIFESSAGGYLEAERL 399 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P----~KVr~lyg~~G-H~G~aVVeF~kdwsGF~nA~rL 399 (472)
..+.|-|++..- +.++|++.|+.|.+ ..|+.++++.| .+|++.|+|.. -..-..|+.+
T Consensus 12 ~~l~V~nLp~~~---------te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~ 74 (107)
T 2lmi_A 12 FLIRAQGLPWSC---------TMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMES-EQDVQKALEK 74 (107)
T ss_dssp CEEEEECCCSSC---------CSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSS-HHHHHHHHTT
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECC-HHHHHHHHHh
Confidence 346788987533 45779999999887 57888888877 48999999975 4445555543
No 8
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=87.35 E-value=0.94 Score=39.12 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=39.7
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc--eeEeccCCCCC-cceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV--RARHSYGPQGH-RGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~--KVr~lyg~~GH-~G~aVVeF~kdw 390 (472)
.+.|-|++..- +.++|++.|+.|..+ .|++++++.|. +|++.|+|...-
T Consensus 44 ~lfVgnLp~~~---------te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e 95 (126)
T 2hgm_A 44 FVRLRGLPFGC---------TKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQE 95 (126)
T ss_dssp EEEEECCCTTC---------CHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTT
T ss_pred EEEEeCCCCCC---------CHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHH
Confidence 46788987533 567899999999777 78999988874 899999998754
No 9
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.11 E-value=1.4 Score=34.21 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=41.2
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCC-cceEEEEeCCCchhhHHHHH
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFESSAGGYLEAER 398 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH-~G~aVVeF~kdwsGF~nA~r 398 (472)
..+.|-|++.. .+.++|++.|+.|....++.+.+..|. +|+|.|+|.. -..-..|+.
T Consensus 11 ~~l~v~nLp~~---------~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~ 68 (91)
T 2dgw_A 11 HTVKLRGAPFN---------VTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSN-EEEVKQALK 68 (91)
T ss_dssp CEEEEECCCSS---------CCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSS-HHHHHHHHH
T ss_pred cEEEEECCCCC---------CCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECC-HHHHHHHHH
Confidence 35678898753 356789999999966788888886664 8999999985 333344443
No 10
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.49 E-value=1.3 Score=35.58 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=37.5
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcce--eEeccCCCCC-cceEEEEeCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQGH-RGMSVLIFES 388 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K--Vr~lyg~~GH-~G~aVVeF~k 388 (472)
..+.|-|++..- +.++|++.|+.|.++. ++.++...|. +|++.|+|..
T Consensus 16 ~~l~V~nLp~~~---------te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~ 66 (104)
T 1wg5_A 16 GFVRLRGLPFGC---------SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFAS 66 (104)
T ss_dssp CEEEEESCCTTC---------CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESS
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECC
Confidence 356788987532 4678999999999875 6777776664 8999999976
No 11
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.42 E-value=0.88 Score=38.94 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=39.4
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-----eeEeccCCCCC-cceEEEEeCCCc
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-----RARHSYGPQGH-RGMSVLIFESSA 390 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-----KVr~lyg~~GH-~G~aVVeF~kdw 390 (472)
..+.|-|++..- +.++|++.|+.|.++ .|+.++...|. +|++.|+|...-
T Consensus 24 ~~v~V~nLp~~~---------te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~ 79 (123)
T 2dha_A 24 VIVRMRGLPFTA---------TAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEE 79 (123)
T ss_dssp CEEEECSCCTTC---------CHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHH
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHH
Confidence 467788987533 467899999999874 68888887775 899999998643
No 12
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=86.39 E-value=1.2 Score=36.87 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=42.1
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCc----ceeEeccCCCCC-cceEEEEeCCCchhhHHHHH
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA----VRARHSYGPQGH-RGMSVLIFESSAGGYLEAER 398 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P----~KVr~lyg~~GH-~G~aVVeF~kdwsGF~nA~r 398 (472)
..+.|-|++..- +.++|++.|+.|.. ..|+.++++.|. +|++.|+|.. -..-..|+.
T Consensus 18 ~~l~V~nLp~~~---------te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~ 79 (118)
T 2db1_A 18 YVVKLRGLPWSC---------SIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELES-EDDVKLALK 79 (118)
T ss_dssp CEEEEESCCTTC---------CHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSS-HHHHHHHGG
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECC-HHHHHHHHh
Confidence 356788987532 56789999999987 578888888875 8999999975 333444443
No 13
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=86.39 E-value=0.61 Score=40.82 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=39.6
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCC-cceEEEEeCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFES 388 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH-~G~aVVeF~k 388 (472)
.++.|-|++..- +.++|++.|+.|.++.|++++++.|. +|++.|+|..
T Consensus 47 ~~lfV~nLp~~~---------te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~ 95 (139)
T 2hgn_A 47 HCVHMRGLPYKA---------TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFAT 95 (139)
T ss_dssp CCEECCSCCTTC---------CHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSH
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCC
Confidence 356788987532 56889999999999999999998875 8999999974
No 14
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=84.75 E-value=2.1 Score=33.26 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=38.4
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCCCch
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESSAG 391 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~kdws 391 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+.|. +|++.|+|...-.
T Consensus 18 ~l~v~nlp~~---------~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 69 (95)
T 2ywk_A 18 TVFVGNLEAR---------VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPES 69 (95)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHH
Confidence 4668898742 3567899999999887 57777777665 8999999987543
No 15
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=84.62 E-value=0.89 Score=37.41 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=38.3
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCc
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdw 390 (472)
+.|-|++.. .+.++|++.|+.|.++ .|+++....++.|++.|+|..--
T Consensus 8 lfV~nLp~~---------~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~ 56 (115)
T 4f25_A 8 IFIKNLDKS---------IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 56 (115)
T ss_dssp EEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHH
T ss_pred EEECCCCCC---------CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHH
Confidence 557788642 3568899999999996 57888888888999999998743
No 16
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.53 E-value=1.9 Score=34.73 Aligned_cols=49 Identities=12% Similarity=0.290 Sum_probs=37.7
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcce---------eEeccCCC-CC-cceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR---------ARHSYGPQ-GH-RGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K---------Vr~lyg~~-GH-~G~aVVeF~kd 389 (472)
-.+.|-|++.. .+.++|++.|+.|.++. ++.+..+. |. +|+|.|+|..-
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~ 75 (113)
T 2cpe_A 16 SAIYVQGLNDS---------VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP 75 (113)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSH
T ss_pred CEEEEcCCCCC---------CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCH
Confidence 35678898742 35678999999999987 78887743 43 89999999864
No 17
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.23 E-value=1.8 Score=35.28 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=39.2
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCch
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSAG 391 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdws 391 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++......+.+|++.|+|...-.
T Consensus 31 ~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~ 81 (109)
T 2err_A 31 RLHVSNIPFR---------FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 81 (109)
T ss_dssp EEEEESCCTT---------CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHH
T ss_pred EEEEECCCCc---------CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHH
Confidence 4567887642 3578899999999887 577777777789999999987543
No 18
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=83.22 E-value=2.3 Score=33.53 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=36.0
Q ss_pred CceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCc
Q 012025 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdw 390 (472)
|+.+.|-|++.. .+.++|++.|+.|.++ .++... ..+|++.|+|...-
T Consensus 11 ~~~l~V~~Lp~~---------~te~~L~~~F~~~G~i~~v~i~~---~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 11 GSKVFVGRCTED---------MTAEELQQFFCQYGEVVDVFIPK---PFRAFAFVTFADDK 59 (89)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHTTTSCEEEEECCS---SCCSEEEEEESCHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHhccCCEEEEEEee---CCCCEEEEEECCHH
Confidence 456778888652 3578899999999986 455555 37899999998743
No 19
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.63 E-value=2.8 Score=33.60 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=35.6
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kd 389 (472)
-.+.|-|++.. .+.++|++.|+.|.++....+.....+.|++.|+|...
T Consensus 23 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~ 71 (109)
T 1x4a_A 23 CRIYVGNLPPD---------IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDP 71 (109)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCH
Confidence 35668898742 35788999999999876444433444689999999764
No 20
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=82.31 E-value=2.7 Score=33.38 Aligned_cols=48 Identities=19% Similarity=0.424 Sum_probs=37.8
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|..|.++ .++.+..+.|. .|++.|+|..-
T Consensus 31 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 80 (107)
T 3ulh_A 31 KLLVSNLDFG---------VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 80 (107)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCH
Confidence 4678898642 3567899999999887 67788777775 89999999853
No 21
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.06 E-value=0.81 Score=37.48 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=37.3
Q ss_pred ceEEEeeccccc--CCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCCc
Q 012025 332 PMVIIMNTRLDK--DENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 332 WMGIIvNt~te~--dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kdw 390 (472)
.+++|.|+.... .++..+.....++|++.|+.|.++.-..+... ...|++.|+|...-
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~-~~~G~afV~f~~~~ 75 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR-HPDGVASVSFRDPE 75 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT-CTTCEEEEECSCHH
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC-CCCEEEEEEECCHH
Confidence 457888974322 12222333345789999999998753344433 36899999998653
No 22
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=81.70 E-value=3.2 Score=32.83 Aligned_cols=50 Identities=16% Similarity=0.350 Sum_probs=37.8
Q ss_pred CceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCCC
Q 012025 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (472)
Q Consensus 331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~kd 389 (472)
+-.+.|-|++.. .+.++|++.|+.|.++ .++...++.|. +|++.|+|...
T Consensus 15 ~~~l~v~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 66 (105)
T 2dnh_A 15 DRKLFVGMLNKQ---------QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSH 66 (105)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCH
Confidence 345668898742 3567899999999886 56777776664 79999999873
No 23
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.67 E-value=2 Score=33.90 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=36.8
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kd 389 (472)
-.+.|-|++.. .+.++|++.|+.|.++.++.+++ .+.|++.|+|...
T Consensus 20 ~~l~V~nL~~~---------~t~~~l~~~F~~~G~v~~~~~~~--~~~g~afV~f~~~ 66 (97)
T 2e5j_A 20 ADVYVGNLPRD---------ARVSDLKRALRELGSVPLRLTWQ--GPRRRAFLHYPDS 66 (97)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHHHTTCCCSEEEEE--TTTTEEEEECSSH
T ss_pred CEEEEeCCCCc---------CcHHHHHHHHHhcCCEEEEEEcC--CCCcEEEEEECCH
Confidence 35778898642 35788999999999988777764 5679999999864
No 24
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.39 E-value=2.9 Score=33.60 Aligned_cols=47 Identities=30% Similarity=0.455 Sum_probs=36.8
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.+..+.|. +|++.|+|..
T Consensus 17 ~l~V~nlp~~---------~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~ 65 (114)
T 2do0_A 17 TVFVANLDYK---------VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQ 65 (114)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECC
Confidence 4668898742 3578899999999886 56777777764 8999999986
No 25
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.25 E-value=3.3 Score=32.59 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=37.2
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~kd 389 (472)
-.+.|-|++.. .+.++|++.|+.|.++ .++....+.|. +|++.|+|...
T Consensus 18 ~~l~v~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 68 (100)
T 2do4_A 18 HKLFISGLPFS---------CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENE 68 (100)
T ss_dssp SCEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCH
Confidence 34668898752 3578899999999986 56777777554 79999999763
No 26
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.11 E-value=2.7 Score=33.44 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=37.4
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCC--C-CcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ--G-HRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~--G-H~G~aVVeF~kd 389 (472)
..+.|-|++.. .+.++|++.|..|....|+.+..+. | +.|++.|+|...
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~ 67 (104)
T 1wi8_A 16 YTAFLGNLPYD---------VTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDL 67 (104)
T ss_dssp EEEEEESCCSS---------CCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSH
T ss_pred CEEEEeCCCCc---------CCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCH
Confidence 46778898753 3578899999999866777777764 3 489999999763
No 27
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=79.73 E-value=3.8 Score=33.67 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=37.0
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCC-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+.| ++|++.|+|..-
T Consensus 37 ~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~ 86 (124)
T 2kt5_A 37 KLLVSNLDFG---------VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERR 86 (124)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCH
Confidence 5678888642 3578899999999876 5777777766 489999999863
No 28
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=79.53 E-value=2.6 Score=35.36 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=37.6
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++......|. +|++.|+|...
T Consensus 97 ~l~v~nl~~~---------~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~ 146 (175)
T 3nmr_A 97 KLFIGMISKK---------CTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTR 146 (175)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred eEEEcCCCCc---------CCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCH
Confidence 4667888642 3578899999999886 57777777776 89999999874
No 29
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=79.35 E-value=2.9 Score=36.29 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=38.0
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCc----ceeEeccCCCCC-cceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA----VRARHSYGPQGH-RGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P----~KVr~lyg~~GH-~G~aVVeF~k 388 (472)
.+.|-|++..- +.++|++.|+.|.. ..|+.++.+.|. +|++.|+|..
T Consensus 46 ~lfVgnLp~~~---------te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~ 97 (136)
T 2hgl_A 46 VVKLRGLPWSC---------SVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGS 97 (136)
T ss_dssp EEEEESCCTTC---------CHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSS
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECC
Confidence 56788987533 46789999999987 478888888875 8999999985
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.26 E-value=4.2 Score=31.79 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=35.7
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+ .| ++|++.|+|..-
T Consensus 10 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 60 (99)
T 1whw_A 10 RLFVRNLSYT---------SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFP 60 (99)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCH
Confidence 4668888642 3567899999999986 46666665 33 479999999873
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.12 E-value=3.7 Score=32.46 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=36.0
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC--CC-CcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP--QG-HRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~--~G-H~G~aVVeF~kd 389 (472)
-.+.|-|++.. .+.++|++.|+.|.++ .++.+... .| ++|++.|+|..-
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~ 68 (107)
T 2cph_A 16 SKILVRNIPFQ---------ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITK 68 (107)
T ss_dssp CCEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSH
T ss_pred CEEEEeCCCCc---------CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCH
Confidence 34668898753 3577899999999987 46666652 33 589999999874
No 32
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=78.76 E-value=2.4 Score=32.83 Aligned_cols=50 Identities=22% Similarity=0.422 Sum_probs=36.5
Q ss_pred CceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCC-CC-CcceEEEEeCCC
Q 012025 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~-~G-H~G~aVVeF~kd 389 (472)
|-.+.|-|++.. .+.++|++.|..|.++. ++.+..+ .| ++|++.|+|..-
T Consensus 15 ~~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~ 67 (95)
T 2ek1_A 15 PTVIKVQNMPFT---------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (95)
T ss_dssp CEEEEEECCCTT---------CCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCH
Confidence 356778898752 35788999999999875 5555543 33 489999999764
No 33
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.68 E-value=3.5 Score=34.03 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=37.2
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcce--eEeccCCCCC-cceEEEEeCCCc
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQGH-RGMSVLIFESSA 390 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K--Vr~lyg~~GH-~G~aVVeF~kdw 390 (472)
..+.|-|++... +.++|++.|+.|.++. +.+.....|. +|++.|+|...-
T Consensus 26 ~~l~V~nLp~~~---------te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~ 78 (124)
T 1wel_A 26 FCVYLKGLPFEA---------ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA 78 (124)
T ss_dssp CEEEEECCCTTC---------CHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSH
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHH
Confidence 467788987532 4678999999999974 3445555665 899999998643
No 34
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=77.42 E-value=1.8 Score=34.63 Aligned_cols=54 Identities=11% Similarity=0.106 Sum_probs=38.7
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~-G-H~G~aVVeF~kd 389 (472)
+++|-|+|.-... ..-...+.|++.|+.|.++. ++.+..+. | .+|++.|+|...
T Consensus 8 ~vfV~nLp~v~~~---~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~ 64 (100)
T 3ns6_A 8 YIVVNGAPVIPSA---KVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSM 64 (100)
T ss_dssp EEEEESCCCCBGG---GHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSH
T ss_pred EEEEeCCCcCChH---HHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCH
Confidence 4778898751111 12345788999999999874 77777775 5 489999999864
No 35
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.20 E-value=2.5 Score=33.02 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=35.2
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-----CCcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-----GHRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-----GH~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+. -.+|++.|+|..
T Consensus 7 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~ 59 (98)
T 2cpf_A 7 GLFIKNLNFS---------TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKK 59 (98)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECC
Confidence 4668888642 3578899999999987 466666554 358999999986
No 36
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=77.08 E-value=4.6 Score=31.04 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=34.6
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++. ++......-++|++.|+|...
T Consensus 10 ~l~V~nlp~~---------~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~ 58 (92)
T 2dgv_A 10 QIFVRNLPFD---------FTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESP 58 (92)
T ss_dssp EEEECSCCTT---------CCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCH
Confidence 4567888642 46788999999998875 555553333589999999863
No 37
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=76.42 E-value=2.3 Score=35.10 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=38.6
Q ss_pred eEEEeecccccC-CCCcccccChHHHHHHhhccCcc-eeEeccCCCCC----cceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKD-ENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH----RGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~d-ddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH----~G~aVVeF~kdw 390 (472)
+++|.|+.+..+ .+......-.++|++.|+.|.++ +|++.-...++ .|++.|+|...-
T Consensus 7 vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~ 70 (105)
T 3v4m_A 7 VLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVF 70 (105)
T ss_dssp EEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHH
T ss_pred EEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHH
Confidence 688999865332 11222233446788889999997 46666665543 699999998853
No 38
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.39 E-value=5.2 Score=31.56 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=35.5
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.+..+. | +.|++.|+|..
T Consensus 17 ~l~v~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (103)
T 2cqg_A 17 DLIVLGLPWK---------TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTE 66 (103)
T ss_dssp CEEEESCCSS---------CCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESS
T ss_pred EEEEEcCCCc---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECC
Confidence 4568888642 3567899999999987 567777654 4 48999999976
No 39
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.35 E-value=5.4 Score=32.54 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=36.1
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCC-CcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~G-H~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|.++ .|+....+.| ++|++.|+|..
T Consensus 13 ~lfV~~Lp~~---------~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~ 61 (103)
T 1s79_A 13 SVYIKGFPTD---------ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDS 61 (103)
T ss_dssp CEEEECCCTT---------CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESS
T ss_pred EEEEECCCCC---------CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECC
Confidence 4567888653 3578899999999987 4777776655 48999999976
No 40
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=76.31 E-value=5.3 Score=32.88 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=36.1
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCC-CcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~G-H~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++...+..| ..|++.|+|..
T Consensus 9 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~ 57 (116)
T 2fy1_A 9 KLFIGGLNRE---------TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFEN 57 (116)
T ss_dssp EEEEECCTTT---------CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECC
Confidence 4568888652 3578899999999886 5677777655 47999999986
No 41
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=76.20 E-value=5.1 Score=32.28 Aligned_cols=47 Identities=21% Similarity=0.409 Sum_probs=34.1
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++.. .+..+|++.|+.|.++. ++.... ....|++.|+|..-
T Consensus 10 ~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~v~i~~~-~~~~g~afV~f~~~ 57 (115)
T 3lqv_A 10 ILYIRNLPYK---------ITAEEMYDIFGKYGPIRQIRVGNT-PETRGTAYVVYEDI 57 (115)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEECS-TTTTTCEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeeC-CCCCcEEEEEECCH
Confidence 4668888642 35788999999999875 444443 33489999999864
No 42
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.20 E-value=3.5 Score=33.62 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=36.3
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCC-----CCcceEEEEeCCC
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ-----GHRGMSVLIFESS 389 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~-----GH~G~aVVeF~kd 389 (472)
+.|-|++.. .+.++|++.|+.|.++.++.+.... -++|++.|+|...
T Consensus 11 lfVgnLp~~---------~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~ 62 (114)
T 2dnl_A 11 VFVGGLPPD---------IDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEE 62 (114)
T ss_dssp EEEECCCTT---------CCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSH
T ss_pred EEEcCCCCC---------CCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCH
Confidence 457787642 3578899999999999877776654 3489999999874
No 43
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.01 E-value=5.5 Score=30.85 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=35.8
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-ee-EeccCC-CC-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RA-RHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KV-r~lyg~-~G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .+ +.+..+ .| +.|++.|+|..-
T Consensus 7 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~ 58 (96)
T 1x5t_A 7 GIFIGNLDPE---------IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 58 (96)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCH
Confidence 4668888753 3578899999999987 46 677763 34 489999999873
No 44
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.74 E-value=6 Score=31.22 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=36.4
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~kd 389 (472)
-.+.|-|++.. .+.++|++.|+.|.++ .++.+..+ .| +.|++.|+|...
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (105)
T 1x5u_A 16 ATVYVGGLDEK---------VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 67 (105)
T ss_dssp TEEEEECCCTT---------CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCH
Confidence 45678898742 3567899999999887 46666665 23 589999999873
No 45
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=75.67 E-value=4.7 Score=31.91 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=36.6
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCC-C-CcceEEEEeCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ-G-HRGMSVLIFES 388 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~-G-H~G~aVVeF~k 388 (472)
-.+.|-|++.. ++.++|++.|+.|....++.+..+. | ++|++.|+|..
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~ 65 (103)
T 2dng_A 16 YTAYVGNLPFN---------TVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDE 65 (103)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESS
T ss_pred eEEEEeCCCCC---------CCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECC
Confidence 35668898753 3578899999999766778887764 4 48999999985
No 46
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=75.44 E-value=4.5 Score=36.15 Aligned_cols=49 Identities=18% Similarity=0.420 Sum_probs=37.9
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~kd 389 (472)
-.+.|-|++.. .+.++|++.|+.|.++ .|+..+...|. .|+|.|+|..-
T Consensus 89 ~~l~V~nLp~~---------~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~ 139 (177)
T 2f3j_A 89 AKLLVSNLDFG---------VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERR 139 (177)
T ss_dssp EEEEEECCCSC---------CCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCH
Confidence 35778888642 4678899999999886 57777777564 79999999864
No 47
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.41 E-value=4.9 Score=30.97 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=35.6
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+. | ++|++.|+|..-
T Consensus 17 ~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 67 (95)
T 2cqc_A 17 CLGVFGLSLY---------TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 67 (95)
T ss_dssp CEEEESCCSS---------CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCH
Confidence 3567888642 3567899999999887 566666654 3 489999999863
No 48
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.38 E-value=5.3 Score=31.79 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=36.5
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCC-C-CcceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~-G-H~G~aVVeF~kdw 390 (472)
.+.|-|++.. .+.++|++.|+.|.++. ++..+.+. | ..|++.|+|..--
T Consensus 17 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 68 (111)
T 1x4h_A 17 TVFIRNLSFD---------SEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 68 (111)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHH
Confidence 4668898742 35788999999999864 66666654 3 5899999998643
No 49
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.27 E-value=5.2 Score=31.52 Aligned_cols=48 Identities=17% Similarity=0.387 Sum_probs=36.7
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhc-cCcc-eeEeccCCCCC-cceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFIL-YAAV-RARHSYGPQGH-RGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsg-F~P~-KVr~lyg~~GH-~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+. |..+ .++.+..+.|. .|++.|+|..-
T Consensus 11 ~l~V~nLp~~---------~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~ 61 (104)
T 2dhg_A 11 SLFVGDLTPD---------VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDE 61 (104)
T ss_dssp CEEEECCCTT---------CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCH
Confidence 4568888642 356789999998 9976 57777777664 89999999863
No 50
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=75.23 E-value=5.3 Score=32.27 Aligned_cols=48 Identities=17% Similarity=0.395 Sum_probs=36.1
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+ .| ++|++.|+|..-
T Consensus 27 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpz_A 27 NLFIYHLPQE---------FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 77 (115)
T ss_dssp CEEEESCCSS---------CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCH
Confidence 4668898752 3568899999999886 57777765 33 479999999863
No 51
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=74.98 E-value=5.6 Score=31.30 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=39.8
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCC-CcceEEEEeCCCchhhHHHHH
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFESSAGGYLEAER 398 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~G-H~G~aVVeF~kdwsGF~nA~r 398 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+.| .+|++.|+|...-. -..|++
T Consensus 11 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~-a~~Ai~ 68 (102)
T 2xs2_A 11 TVFVGGIDVR---------MDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD-VQKIVE 68 (102)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCC-HHHHTT
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHH-HHHHHh
Confidence 4667888642 3577899999999887 5677777655 47999999986543 244443
No 52
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.80 E-value=6.2 Score=31.79 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=41.4
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCCchhhHHHHHHH
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSAGGYLEAERLH 400 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kdwsGF~nA~rLe 400 (472)
-.+.|-|++.. .+.++|++.|+.|..+ .|+.+..+. | ++|++.|+|.. -..-..|+.|+
T Consensus 26 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~l~ 87 (114)
T 2cq4_A 26 RTVFCMQLAAR---------IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE-IQSVPLAIGLT 87 (114)
T ss_dssp TEEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESC-GGGHHHHHHHT
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCc-HHHHHHHHHcC
Confidence 45668898742 3567899999999886 467776665 3 58999999965 34445555443
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.77 E-value=4.4 Score=31.98 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=34.9
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.+....-+.|++.|+|..
T Consensus 17 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~ 64 (103)
T 2d9p_A 17 NLYVKNLDDG---------IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSS 64 (103)
T ss_dssp CEEEECCCTT---------CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECC
Confidence 4668888642 3578899999999887 466666623358999999985
No 54
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=74.76 E-value=6.6 Score=31.03 Aligned_cols=49 Identities=10% Similarity=0.327 Sum_probs=36.2
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
..+.|-|++.. .+.++|++.|+.|.++ .++...++. | +.|++.|+|...
T Consensus 24 ~~l~V~nlp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 75 (106)
T 1p27_B 24 WILFVTGVHEE---------ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 75 (106)
T ss_dssp EEEEEECCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCH
Confidence 35678898752 3567899999999887 466666554 3 489999999863
No 55
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=74.66 E-value=6 Score=31.07 Aligned_cols=50 Identities=10% Similarity=0.266 Sum_probs=37.6
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcce---------eEeccCCC-C-CcceEEEEeCCCc
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR---------ARHSYGPQ-G-HRGMSVLIFESSA 390 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K---------Vr~lyg~~-G-H~G~aVVeF~kdw 390 (472)
..+.|-|++.. .+.++|++.|+.|..+. ++....+. | .+|++.|+|...-
T Consensus 14 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~ 74 (99)
T 2la6_A 14 NTIFVQGLGEN---------VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPP 74 (99)
T ss_dssp SEEEEECCCSS---------CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHH
Confidence 45668888642 35788999999999886 67777653 4 4899999998643
No 56
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=74.63 E-value=5.7 Score=31.98 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=35.2
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.+..+ .| ++|++.|+|..
T Consensus 17 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 66 (115)
T 2dgo_A 17 HVFVGDLSPE---------ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 66 (115)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECC
Confidence 4668888642 3578899999999886 46677664 34 48999999976
No 57
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.56 E-value=5.3 Score=29.55 Aligned_cols=48 Identities=23% Similarity=0.323 Sum_probs=35.1
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC--CCcceEEEEeCCCc
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESSA 390 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~--GH~G~aVVeF~kdw 390 (472)
+.|-|++.. .+.++|++.|+.|.++ .++...++. -++|++.|+|.+.-
T Consensus 3 l~v~nlp~~---------~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 53 (77)
T 1uaw_A 3 MFIGGLSWQ---------TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 53 (77)
T ss_dssp EEEESCCSS---------CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTT
T ss_pred EEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHH
Confidence 567888653 3567799999999886 466666553 35899999998643
No 58
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=74.47 E-value=6.3 Score=32.00 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=36.1
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~k 388 (472)
..+.|-|++.. .+.++|++.|+.|.++ .++...++. | ++|++.|+|..
T Consensus 26 ~~lfV~nLp~~---------~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~ 76 (109)
T 2rs2_A 26 CKMFIGGLSWQ---------TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 76 (109)
T ss_dssp CCEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESS
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECC
Confidence 45668888643 3567899999999987 466776653 3 58999999985
No 59
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=73.86 E-value=0.92 Score=32.15 Aligned_cols=21 Identities=29% Similarity=0.771 Sum_probs=16.7
Q ss_pred EEccCCCCCCCCccccCCchHHhhhhc
Q 012025 252 WHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 252 f~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
-||-||.. . |.|.+.||.|-.
T Consensus 10 qhcrfckk-----k-ysdvknlikhir 30 (37)
T 2elu_A 10 QHCRFCKK-----K-YSDVKNLIKHIR 30 (37)
T ss_dssp CEETTTTE-----E-CSSHHHHHHHHH
T ss_pred HHHHHHHH-----H-HHHHHHHHHHHH
Confidence 48999942 3 889999999954
No 60
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.74 E-value=3.5 Score=32.21 Aligned_cols=49 Identities=20% Similarity=0.386 Sum_probs=35.3
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCC-CC-CcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~-~G-H~G~aVVeF~kd 389 (472)
-.+.|-|++.. .+.++|++.|..|.++. ++.+..+ .| .+|++.|+|...
T Consensus 16 ~~l~v~nLp~~---------~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~ 67 (98)
T 2cqp_A 16 TIIKVQNMPFT---------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (98)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCH
Confidence 35678888742 35788999999999875 5554443 34 489999999764
No 61
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=73.34 E-value=7 Score=31.39 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=36.2
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
.+.|-|+|.. .+.++|++.|+.|.++ .++....+. | ++|+|.|+|..-
T Consensus 21 ~lfV~nLp~~---------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~ 71 (99)
T 4fxv_A 21 NLIVNYLPQN---------MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71 (99)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCH
Confidence 4668898753 3567899999999986 467776654 3 479999999864
No 62
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=73.31 E-value=7 Score=32.28 Aligned_cols=48 Identities=10% Similarity=0.182 Sum_probs=36.1
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCC-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQG-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++. ++.+..+.| ..|++.|+|...
T Consensus 2 ~l~V~nlp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~ 51 (166)
T 3md3_A 2 VLYVGNLDKA---------ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQS 51 (166)
T ss_dssp EEEEEEEETT---------CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSH
T ss_pred EEEECCCCCc---------CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCH
Confidence 3568888742 35678999999999874 777777765 579999999864
No 63
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=73.23 E-value=8.3 Score=29.32 Aligned_cols=49 Identities=22% Similarity=0.531 Sum_probs=36.2
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kdw 390 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.+..+. | ++|++.|+|...-
T Consensus 13 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 64 (87)
T 3s7r_A 13 KMFVGGLSWD---------TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAA 64 (87)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHH
Confidence 4668888642 3578899999999886 566666653 4 4899999998644
No 64
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=73.09 E-value=7.3 Score=29.46 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=34.8
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++...++ .| ++|++.|+|..
T Consensus 8 ~l~v~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 57 (87)
T 3bs9_A 8 HVFVGDLSPE---------ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 57 (87)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECC
Confidence 4667888642 3578899999999886 46666664 33 48999999976
No 65
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.57 E-value=8.6 Score=30.05 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=34.9
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.+..+. | ++|++.|+|..
T Consensus 12 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 61 (99)
T 2dgs_A 12 KIFVGGIPHN---------CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 61 (99)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECC
Confidence 3557888642 3577899999999887 566666543 3 58999999976
No 66
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=72.55 E-value=8.5 Score=29.22 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=35.4
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+ .| ++|++.|+|...
T Consensus 8 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (89)
T 3ucg_A 8 SIYVGNVDYG---------ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK 58 (89)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESST
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 4567787642 3578899999999886 46666664 33 489999999975
No 67
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=72.30 E-value=3.2 Score=32.73 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=35.9
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccC-c-ceeEeccCCC--CCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYA-A-VRARHSYGPQ--GHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~-P-~KVr~lyg~~--GH~G~aVVeF~kd 389 (472)
+++|-|+|.. .+.++|++.|+.|. + ..|+.+..+. ..+|+|.|+|..-
T Consensus 3 ~i~v~nLp~~---------~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~ 54 (91)
T 2lxi_A 3 IVMLRMLPQA---------ATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHL 54 (91)
T ss_dssp EEEEETCCSS---------CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCH
Confidence 4678888753 35678999999887 3 4577777664 3589999999864
No 68
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.24 E-value=6.2 Score=31.07 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=35.9
Q ss_pred eEEEeecccccCCCCcccccChHHHH----HHhhccCcc-eeEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELL----EYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLk----d~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|+ +.|+.|.++ .++....+.+ +|++.|+|...
T Consensus 11 ~l~V~nL~~~---------~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~ 62 (96)
T 2dgx_A 11 DVQVSNIDYR---------LSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENL 62 (96)
T ss_dssp EEEEESCCTT---------SCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCH
Confidence 3567888642 3466777 899999976 5778877777 89999999864
No 69
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=72.00 E-value=5.7 Score=30.12 Aligned_cols=53 Identities=11% Similarity=0.198 Sum_probs=34.3
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCC-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQG-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~G-H~G~aVVeF~kd 389 (472)
++.|-|+|...++ + .-.+.++|++.|+.|.++. ++.. ...| ..|++.|+|...
T Consensus 3 ~l~V~nLp~~~~~--~-~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~ 57 (81)
T 2krb_A 3 VIVVDNVPQVGPD--R-LEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASP 57 (81)
T ss_dssp EEEEESCCCCCTT--T-HHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSH
T ss_pred EEEEeCCCCCcHH--H-HHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCH
Confidence 4668888752221 0 1114578999999999874 4444 3344 479999999863
No 70
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=71.56 E-value=6.7 Score=36.36 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=41.7
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCchhhHHHHH
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdwsGF~nA~r 398 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.+....|.+|+|.|+|..- ..-..|+.
T Consensus 43 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~-~~A~~A~~ 99 (292)
T 2ghp_A 43 TVLVKNLPKS---------YNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARY-DGALAAIT 99 (292)
T ss_dssp EEEEEEECTT---------CCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSH-HHHHHHHT
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCH-HHHHHHHH
Confidence 4678898753 3567899999999886 5777788888899999999853 33344443
No 71
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.31 E-value=5.4 Score=31.34 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=33.9
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCC-CcceEEEEeCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQG-HRGMSVLIFES 388 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~G-H~G~aVVeF~k 388 (472)
-.+.|-|++.. .+.++|++.|+.|..+ +.+....| +.|++.|+|..
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~~g~v--~~~~~~~g~~~g~afV~f~~ 62 (101)
T 2fc9_A 16 KTLVLSNLSYS---------ATEETLQEVFEKATFI--KVPQNQNGKSKGYAFIEFAS 62 (101)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHCSSCSEE--ECCBCSSSCBCSEEEEECSS
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCEE--EEEECCCCCEeeEEEEEECC
Confidence 34668898753 3578899999999766 45555555 48999999986
No 72
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.11 E-value=8.6 Score=31.02 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=36.1
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~k 388 (472)
-.+.|-|++.. .+.++|++.|+.|.++ .++.+..+. | +.|++.|+|..
T Consensus 28 ~~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 78 (116)
T 1x4b_A 28 RKLFIGGLSFE---------TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 78 (116)
T ss_dssp TEEEEECCTTC---------CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSS
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCC
Confidence 45668888743 3567899999999886 577776653 3 58999999986
No 73
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.08 E-value=11 Score=29.11 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=35.7
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+. | ++|++.|+|..-
T Consensus 7 ~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 57 (95)
T 2dnz_A 7 GLYVGSLHFN---------ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS 57 (95)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCH
Confidence 4668888642 3578899999999886 466666543 3 589999999873
No 74
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.90 E-value=8.5 Score=29.61 Aligned_cols=47 Identities=19% Similarity=0.380 Sum_probs=35.6
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|..|.++ .++....+. | ++|++.|+|..
T Consensus 18 ~l~V~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 67 (94)
T 2e5h_A 18 TVYVSNLPFS---------LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 67 (94)
T ss_dssp SEEEESCCTT---------SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESC
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECC
Confidence 4668898742 3577899999999887 566666654 3 58999999986
No 75
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=70.73 E-value=8.8 Score=31.41 Aligned_cols=52 Identities=19% Similarity=0.078 Sum_probs=35.6
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCCchhhHHHHH
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kdwsGF~nA~r 398 (472)
..++|-|++... +.++|++.|+.|..+. ++++.. |++.|+|... ..-..|+.
T Consensus 17 ~~l~V~nLp~~~---------t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~-~~a~~Ai~ 69 (115)
T 3beg_B 17 NRVVVSGLPPSG---------SWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRK-EDMTYAVR 69 (115)
T ss_dssp CCEEEEECCSSC---------CTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSH-HHHHHHHH
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCH-HHHHHHHH
Confidence 457789987533 4567999999998764 444443 8999999873 33344443
No 76
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.59 E-value=9.5 Score=30.78 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=35.4
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|..|.++ .++.+..+. | ++|++.|+|..
T Consensus 19 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 68 (116)
T 2cqd_A 19 KIFVGGLPYH---------TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 68 (116)
T ss_dssp EEEEECCCSS---------CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECC
Confidence 4668888742 3578899999999887 466776653 3 58999999985
No 77
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.35 E-value=5.5 Score=31.44 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=36.1
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~kd 389 (472)
-.+.|-|++.. .+.++|++.|+.|.++ .++...++ .| ++|++.|+|..-
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (103)
T 2cq0_A 16 ATIRVTNLSED---------TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 67 (103)
T ss_dssp EEEEEESCCTT---------CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCH
Confidence 34668898752 3577899999999886 46666664 23 589999999864
No 78
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=70.30 E-value=9.1 Score=32.62 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=37.7
Q ss_pred CceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
+-.+.|-|++.. .+.++|++.|+.|.++ .|+.+..+. | +.|++.|+|..-
T Consensus 39 ~~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 91 (156)
T 1h2v_Z 39 SCTLYVGNLSFY---------TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSR 91 (156)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCH
Confidence 456778898742 3578899999999887 567777664 3 479999999864
No 79
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=70.29 E-value=5.9 Score=31.42 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=37.7
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCC--CC-CcceEEEEeCCCchhhHHHH
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGP--QG-HRGMSVLIFESSAGGYLEAE 397 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~--~G-H~G~aVVeF~kdwsGF~nA~ 397 (472)
-.+.|-|++..- +.++|++.|+.|....++....+ .| ++|++.|+|.. ...-..|+
T Consensus 20 ~~l~V~nLp~~~---------t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~-~~~a~~Ai 78 (100)
T 2j76_E 20 YTAFLGNLPYDV---------TEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED-LDSLLSAL 78 (100)
T ss_dssp CEEEESCCSSCC---------SSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECC-HHHHHHHH
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECC-HHHHHHHH
Confidence 345678886533 45679999999985567777665 34 48999999985 33334444
No 80
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=70.28 E-value=7.8 Score=29.28 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=36.4
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCC--C-CcceEEEEeCCCc
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ--G-HRGMSVLIFESSA 390 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~--G-H~G~aVVeF~kdw 390 (472)
-.+.|-|++.. .+.++|++.|+.|.++. ++...... + +.|++.|+|...-
T Consensus 5 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~ 58 (88)
T 4a8x_A 5 TKVHIGRLTRN---------VTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPD 58 (88)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHH
Confidence 35668888642 35778999999998874 55555553 4 7899999998754
No 81
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.26 E-value=5.9 Score=30.41 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=32.5
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCC
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kd 389 (472)
+.|-|++.. .+.++|++.|+.|.++. ++.... +.|++.|+|...
T Consensus 8 l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~ 52 (88)
T 1wf0_A 8 VFVGRCTGD---------MTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADD 52 (88)
T ss_dssp EEEESCCSS---------SCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCH
T ss_pred EEEeCCCCC---------CCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCH
Confidence 557787642 35788999999999874 444432 788999999983
No 82
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.13 E-value=9 Score=30.76 Aligned_cols=43 Identities=19% Similarity=0.072 Sum_probs=32.9
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~k 388 (472)
..+.|-|++.. .+.++|++.|+.|.++. ++++.. |++.|+|..
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~ 59 (108)
T 1x4c_A 16 NRVVVSGLPPS---------GSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVR 59 (108)
T ss_dssp CEEEEESCCSS---------CCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESS
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECC
Confidence 45778998742 35788999999998764 555554 899999987
No 83
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.03 E-value=8.5 Score=30.88 Aligned_cols=49 Identities=31% Similarity=0.398 Sum_probs=37.3
Q ss_pred CceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCC
Q 012025 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFES 388 (472)
Q Consensus 331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~k 388 (472)
+-.+.|-|++.. .+.++|++.|+.|..+ .++.+.++.|. .|++.|+|..
T Consensus 25 ~~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~ 75 (114)
T 1x5o_A 25 PTNLYISNLPLS---------MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMES 75 (114)
T ss_dssp TTEEEEESCCTT---------CCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESC
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECC
Confidence 456778888642 3577899999999876 56777776554 7999999986
No 84
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=69.60 E-value=11 Score=29.41 Aligned_cols=48 Identities=19% Similarity=0.377 Sum_probs=35.1
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|+++ .++...++. | +.|++.|+|...
T Consensus 4 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 54 (96)
T 2x1f_A 4 VVYLGSIPYD---------QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDL 54 (96)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCH
Confidence 3567787642 3578899999999987 466666643 3 489999999864
No 85
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=69.59 E-value=8.2 Score=31.73 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=37.0
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. ++.++|++.|+.|.++ +++.++.+. | ++|++.|+|...
T Consensus 8 ~lfV~nL~~~---------~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~ 58 (110)
T 3s8s_A 8 EVTFARLNDN---------VRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTST 58 (110)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCH
Confidence 4667887642 3578899999999986 577777775 4 489999999874
No 86
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=69.44 E-value=8.2 Score=34.87 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=37.8
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCC-CcceEEEEeCCCc
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFESSA 390 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~G-H~G~aVVeF~kdw 390 (472)
-++.|-|++.. .+.++|++.|+.|+++ .|+......| +.|++.|+|...-
T Consensus 110 ~~l~V~nLp~~---------~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e 161 (193)
T 2voo_A 110 RSVYIKGFPTD---------ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIE 161 (193)
T ss_dssp TEEEEECCCTT---------CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHH
T ss_pred CEEEecCCCCc---------CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHH
Confidence 35778898752 2568899999999986 4666766666 4899999998743
No 87
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=69.40 E-value=8.4 Score=31.48 Aligned_cols=50 Identities=10% Similarity=0.323 Sum_probs=36.6
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCC-CC-CcceEEEEeCCCc
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESSA 390 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~-~G-H~G~aVVeF~kdw 390 (472)
-.+.|-|++.. .+.++|++.|..|.++. ++....+ .| +.|++.|+|..--
T Consensus 23 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 75 (126)
T 3ex7_B 23 WILFVTGVHEE---------ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYK 75 (126)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHH
Confidence 35778898742 35788999999999875 5666654 34 4899999998653
No 88
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=69.35 E-value=8.7 Score=31.29 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=37.8
Q ss_pred CceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCCCc
Q 012025 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESSA 390 (472)
Q Consensus 331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~kdw 390 (472)
+-.+.|-|++.. .+.++|++.|+.|.++ .++.++.+ .| +.|++.|+|...-
T Consensus 36 ~~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 89 (124)
T 2jwn_A 36 KRSVYVGNVDYG---------STAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERN 89 (124)
T ss_dssp HTEEEEEEECTT---------CCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHH
Confidence 346778898642 3578899999999987 47777764 33 4899999998743
No 89
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.23 E-value=7.9 Score=29.33 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=38.0
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCC--CCcceEEEEeCCCchhhHHHHH
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ--GHRGMSVLIFESSAGGYLEAER 398 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~--GH~G~aVVeF~kdwsGF~nA~r 398 (472)
.+.|-|++.. .+.++|++.|+.|.++. ++....+. -++|++.|+|..--. -..|++
T Consensus 7 ~l~v~nlp~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~ 65 (85)
T 1x4e_A 7 GLYIRGLQPG---------TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSA-AQKAVT 65 (85)
T ss_dssp EEEEESCCTT---------CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHH-HHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHH-HHHHHH
Confidence 4567888642 35678999999998864 56666543 348999999987432 344443
No 90
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=69.14 E-value=8.5 Score=28.95 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=34.6
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCC-CC-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~-~G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++. ++....+ .| ++|++.|+|...
T Consensus 9 ~l~V~nl~~~---------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 59 (85)
T 3mdf_A 9 VLYVGGLAEE---------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA 59 (85)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCH
Confidence 3568888642 35688999999998864 5555553 33 589999999864
No 91
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=69.02 E-value=9.4 Score=28.16 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=34.2
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
+.|-|++.. .+.++|++.|+.|.++ .++....+. | ++|++.|+|...
T Consensus 2 l~v~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 51 (75)
T 2mss_A 2 IFVGGLSVN---------TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE 51 (75)
T ss_dssp EEEECCCSS---------CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCH
T ss_pred EEEecCCCC---------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCH
Confidence 456777642 3578899999999987 466666542 3 589999999874
No 92
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=68.84 E-value=7.3 Score=32.56 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=37.0
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCC----CcceEEEEeCCCc
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG----HRGMSVLIFESSA 390 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~G----H~G~aVVeF~kdw 390 (472)
+.|-|++.. .+.++|++.|+.|.++ .++.+..+.+ ++|++.|+|...-
T Consensus 6 l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~ 58 (175)
T 3nmr_A 6 MFVGQVPRT---------WSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRK 58 (175)
T ss_dssp EEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHH
T ss_pred EEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHH
Confidence 567788652 3577899999999887 5677777665 5899999998753
No 93
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=68.68 E-value=6.6 Score=31.03 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=35.6
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .|+.+..+. | ++|++.|+|..-
T Consensus 15 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 65 (106)
T 2dgp_A 15 KLFIGQIPRN---------LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCER 65 (106)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCH
Confidence 4568898742 3567899999999876 566666554 3 589999999874
No 94
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.56 E-value=8.8 Score=30.08 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=35.5
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.+..+. | ++|++.|+|..-
T Consensus 14 ~l~v~nLp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 64 (102)
T 1x5s_A 14 KLFVGGLSFD---------TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENI 64 (102)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 4668898742 3577899999999887 566666543 2 589999999763
No 95
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.54 E-value=11 Score=29.73 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=36.9
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCC-C-CcceEEEEeCCCch
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESSAG 391 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~-G-H~G~aVVeF~kdws 391 (472)
.+.|-|++.. .+.++|++.|+.|.++. ++...++. | +.|++.|+|..--.
T Consensus 15 ~l~V~nLp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 67 (103)
T 2dnm_A 15 TLKVDNLTYR---------TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRD 67 (103)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHH
Confidence 4668898752 35788999999998864 66666554 3 48999999987543
No 96
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=68.30 E-value=8.2 Score=31.18 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=36.4
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc---eeEeccCCC-C-CcceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV---RARHSYGPQ-G-HRGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~---KVr~lyg~~-G-H~G~aVVeF~kdw 390 (472)
+++|-|++.. .+.++|++.|+.|.++ .|+...++. | .+|++.|+|..--
T Consensus 11 tlfV~nL~~~---------~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~ 64 (95)
T 2lkz_A 11 TIILRNIAPH---------TVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAM 64 (95)
T ss_dssp EEEEESCCTT---------CCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSH
T ss_pred EEEEeCCCCc---------CCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHH
Confidence 3668888753 2567899999999853 577777664 3 4799999998754
No 97
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=67.94 E-value=6.1 Score=35.39 Aligned_cols=49 Identities=18% Similarity=0.395 Sum_probs=38.6
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdw 390 (472)
.+.|-|++.. .+.++|++.|+.|..+ .++++....+.+|++.|+|...-
T Consensus 105 ~l~v~nl~~~---------~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 105 NIFIKNLDKS---------IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred cceECCcccc---------cHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 3567888642 3568899999999886 57778888888999999998753
No 98
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.85 E-value=7 Score=30.92 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=39.3
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC--CCcceEEEEeCCCchhhHHHHHH
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESSAGGYLEAERL 399 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~--GH~G~aVVeF~kdwsGF~nA~rL 399 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.+..+. -++|++.|+|..-- .-..|+..
T Consensus 18 ~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~-~a~~a~~~ 77 (105)
T 2dh8_A 18 KLFVGGLDWS---------TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN-CVGTVLAS 77 (105)
T ss_dssp EECCBSCCTT---------CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTT-HHHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHH-HHHHHHHh
Confidence 4557788642 3578899999999887 567776643 35799999998643 33444433
No 99
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=67.31 E-value=8.6 Score=33.31 Aligned_cols=49 Identities=14% Similarity=0.342 Sum_probs=36.8
Q ss_pred CceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCC-CC-CcceEEEEeCC
Q 012025 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFES 388 (472)
Q Consensus 331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~-~G-H~G~aVVeF~k 388 (472)
.++++|-|++.. .+.+.|++.|+.|.++. |+.+..+ .| +.|+++|+|..
T Consensus 72 ~~~l~V~nLp~~---------~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 123 (165)
T 1rk8_A 72 GWILFVTSIHEE---------AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET 123 (165)
T ss_dssp CEEEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESS
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECC
Confidence 356789998752 35788999999999874 5566553 34 48999999985
No 100
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=67.03 E-value=12 Score=29.70 Aligned_cols=48 Identities=13% Similarity=0.322 Sum_probs=35.1
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCC--CCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ--GHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~--GH~G~aVVeF~kd 389 (472)
++.|-|++.. .+.++|++.|+.|.++. ++....+. -+.|++.|+|...
T Consensus 28 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 78 (110)
T 1oo0_B 28 ILFVTSIHEE---------AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETH 78 (110)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 4668888742 35778999999998874 55555542 3489999999864
No 101
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.95 E-value=10 Score=29.12 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=30.7
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|.++.-..+. +|++.|+|..
T Consensus 10 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~ 51 (90)
T 2dnq_A 10 KLFIGNLPRE---------ATEQEIRSLFEQYGKVLECDII-----KNYGFVHIED 51 (90)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECC
Confidence 3567788642 3578899999999987433332 6899999986
No 102
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.61 E-value=7.7 Score=30.42 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=32.6
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCC-CC-CcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGP-QG-HRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~-~G-H~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|++| +.++.+..+ .| ++|++.|+|..
T Consensus 17 ~l~V~nLp~~---------~t~~~l~~~F~~~--~~~~~~~~~~~~~~~g~afV~f~~ 63 (102)
T 2fc8_A 17 TLFVKGLSED---------TTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFNS 63 (102)
T ss_dssp SEEEECCCTT---------CCHHHHHHTSTTC--SEEEEEECSSSCSEEEEEEEECSS
T ss_pred EEEEeCCCCc---------cCHHHHHHHhcCC--eEEEEEecCCCCCcCcEEEEEECC
Confidence 3558888642 3577899999988 466666654 33 47999999986
No 103
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=66.32 E-value=8 Score=32.21 Aligned_cols=75 Identities=9% Similarity=0.212 Sum_probs=47.9
Q ss_pred EEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCCchhhHHHHHHHHHHhhcCCChhhhh
Q 012025 335 IIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWN 414 (472)
Q Consensus 335 IIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kdwsGF~nA~rLekhFe~qg~GRkDW~ 414 (472)
+|-|++-+ .+.+.|++.|..|.|+.-..+.- |+|++.|+|... .+|.+--+... +
T Consensus 11 ~VgNL~~~---------~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~----~eA~~Ai~~Ln--~------- 65 (89)
T 2wbr_A 11 LLKNLTAQ---------IDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTR----EEANKAQMALN--N------- 65 (89)
T ss_dssp EEECCCTT---------CCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSH----HHHHHHHHHHT--T-------
T ss_pred EEeCCCcc---------CCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCH----HHHHHHHHHhc--C-------
Confidence 37887543 24578999999999986555432 799999999874 34444333322 1
Q ss_pred hhcccccccCCCcceeeeEecccccccc
Q 012025 415 NSNRRVLFHAGGKRQLYGFMALKEDLDV 442 (472)
Q Consensus 415 ~~~r~~~~~pG~~~~LYGWlAradDyds 442 (472)
.+. .++.|.--.|+++|...
T Consensus 66 ---~~l-----~gr~I~V~~A~e~~~~~ 85 (89)
T 2wbr_A 66 ---CVL-----ANTTIFAESPSENEVQS 85 (89)
T ss_dssp ---EEE-----TTEEEEEECCCHHHHHH
T ss_pred ---CEE-----CCcEEEEEECCHHHHHH
Confidence 111 25566667777666654
No 104
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=65.89 E-value=11 Score=28.92 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=35.6
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC--CCcceEEEEeCCCc
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESSA 390 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~--GH~G~aVVeF~kdw 390 (472)
+.|-|++.. .+.++|++.|+.|.++ .++....+. -++|++.|+|...-
T Consensus 4 l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 54 (90)
T 2ki2_A 4 IYVGNLVYS---------ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES 54 (90)
T ss_dssp EEEEEECTT---------SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH
T ss_pred EEECCCCCC---------CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 567787642 3567899999999886 567776653 35899999998754
No 105
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=65.82 E-value=12 Score=30.83 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=35.0
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCC-CC-CcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~-~G-H~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|.++. ++.+..+ .| ++|++.|+|..
T Consensus 4 ~l~v~nlp~~---------~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~ 53 (167)
T 1fxl_A 4 NLIVNYLPQN---------MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 53 (167)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred eEEEcCCCCC---------CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECC
Confidence 3567888752 35778999999999874 6666665 44 47999999986
No 106
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=65.03 E-value=11 Score=29.51 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=33.3
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCc
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdw 390 (472)
+.|-|++.. .+.++|++.|+.|.++ .++...+ ..|++.|+|...-
T Consensus 3 l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~ 48 (101)
T 2hvz_A 3 VYVGNLGTG---------AGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPR 48 (101)
T ss_dssp EEEECCCSS---------CSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHH
T ss_pred EEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHH
Confidence 567787642 3578899999999886 4555554 7899999997643
No 107
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.85 E-value=12 Score=29.24 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=32.3
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++.. ++.++|++.|+.|.++. ++...+ .|++.|+|...
T Consensus 19 ~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~ 63 (97)
T 1why_A 19 RLWVGGLGPN---------TSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESL 63 (97)
T ss_dssp CEEEECCCSS---------CCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCH
Confidence 4667888642 35788999999999874 444432 78999999864
No 108
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.69 E-value=9.7 Score=30.80 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=34.1
Q ss_pred eEEEeecccccCCCCcccccChHHHH---HHhhccCcc-eeEeccCCC-----CCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELL---EYFILYAAV-RARHSYGPQ-----GHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLk---d~fsgF~P~-KVr~lyg~~-----GH~G~aVVeF~kd 389 (472)
++.|-|++... +.++|+ +.|+.|.++ .++...... ..+|++.|+|...
T Consensus 17 ~l~V~nLp~~~---------~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~ 73 (111)
T 2cpi_A 17 LVFVVGLSQRL---------ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRS 73 (111)
T ss_dssp CEEEEEECTTT---------CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSH
T ss_pred EEEEECCCCCC---------CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcH
Confidence 56788987543 346688 899999987 455554443 3468999999874
No 109
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.54 E-value=10 Score=29.69 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=35.4
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC--CCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~--GH~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+. -+.|++.|+|..-
T Consensus 14 ~l~V~nLp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 64 (102)
T 2cqb_A 14 VLYVGGLAEE---------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA 64 (102)
T ss_dssp CEEEESCCSS---------CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 4568888752 3578899999999887 466666533 3589999999864
No 110
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=64.16 E-value=13 Score=29.98 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=36.0
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC--CCcceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~--GH~G~aVVeF~kdw 390 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+. -++|++.|+|...-
T Consensus 42 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 93 (118)
T 2khc_A 42 NLFIYHLPQE---------FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPD 93 (118)
T ss_dssp EEEEECSCTT---------CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHH
Confidence 4668888642 3578899999999886 466666543 35899999998754
No 111
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=64.14 E-value=25 Score=29.62 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=37.2
Q ss_pred CceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCCC
Q 012025 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~kd 389 (472)
+..+.|-|++.. .+.++|++.|+.|..+ .++...++ .| ++|++.|+|...
T Consensus 70 ~~~l~v~nl~~~---------~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~ 122 (158)
T 2kn4_A 70 MTSLKVDNLTYR---------TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 122 (158)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCH
Confidence 356778888642 3578899999999987 56666664 23 589999999863
No 112
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=63.77 E-value=8.7 Score=32.41 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=35.7
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC--CCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~--GH~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.++.+. -..|++.|+|..-
T Consensus 48 ~l~V~nLp~~---------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~ 98 (129)
T 2kxn_B 48 CLGVFGLSLY---------TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 98 (129)
T ss_dssp CBCEETCTTS---------CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCH
Confidence 3457888642 3577899999999987 567776654 3589999999864
No 113
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=63.56 E-value=8.4 Score=32.11 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=36.8
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce---eEeccCC-CC-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR---ARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K---Vr~lyg~-~G-H~G~aVVeF~kd 389 (472)
.+.|-|++... +.++|++.|..|..+. |+.+.++ .| .+|++.|+|..-
T Consensus 25 ~lfV~nL~~~~---------te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~ 77 (131)
T 2m2b_A 25 TIILRNLNPHS---------TMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI 77 (131)
T ss_dssp EEEECSCCTTC---------CSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH
Confidence 46688887533 4578999999998873 6888777 34 489999999986
No 114
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=63.48 E-value=15 Score=27.36 Aligned_cols=48 Identities=17% Similarity=0.314 Sum_probs=34.9
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~-G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++. ++....+. | .+|++.|+|..-
T Consensus 3 ~l~V~nlp~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 53 (83)
T 3md1_A 3 NLFVGDLNVN---------VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 53 (83)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCH
Confidence 4667787642 35788999999998864 66666632 3 489999999864
No 115
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=63.36 E-value=9 Score=30.69 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=33.5
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kdw 390 (472)
.+.|-|++... .+.++|++.|+.|.++.-..+ +.|++.|+|...-
T Consensus 29 ~l~V~nl~~~~--------~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~ 73 (110)
T 1wf1_A 29 RVFIGNLNTAL--------VKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNER 73 (110)
T ss_dssp EEEECSCCCSS--------CCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSH
T ss_pred EEEEeCCCccc--------CCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHH
Confidence 56788886531 357889999999998754333 6899999998754
No 116
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.31 E-value=8.7 Score=30.11 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=35.6
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+ .| ++|++.|+|..-
T Consensus 10 ~l~V~nlp~~---------~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 60 (104)
T 1p1t_A 10 SVFVGNIPYE---------ATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 60 (104)
T ss_dssp CEEEESCCTT---------SCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCH
T ss_pred EEEEeCCCCc---------CCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCH
Confidence 3568888642 4578899999999886 56777664 34 389999999863
No 117
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=63.22 E-value=9.1 Score=35.43 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=39.4
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCCCchh
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESSAGG 392 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~kdwsG 392 (472)
.+.|-|++.. .+.+.|++.|+.|.++ .|+.+....|. +|++.|+|...-..
T Consensus 98 ~l~v~nl~~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 98 ALTVKNLSPV---------VSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred cccccCCCCC---------CCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 5778888642 3578899999999987 67777777764 89999999876443
No 118
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.97 E-value=11 Score=29.35 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=35.3
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc--eeEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV--RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~--KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.+..+. | +.|++.|+|..-
T Consensus 11 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~ 62 (99)
T 2div_A 11 SLWMGDLEPY---------MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADL 62 (99)
T ss_dssp EEEECSCCTT---------CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCH
Confidence 3557788642 3578899999999984 567777652 3 479999999853
No 119
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=62.32 E-value=14 Score=29.62 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=36.5
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCC-CcceEEEEeCCCch
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQG-HRGMSVLIFESSAG 391 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~G-H~G~aVVeF~kdws 391 (472)
.+.|-|++...++. ...+.++|++.|+.|.++. ++.. ...| .+|++.|+|..--.
T Consensus 17 ~l~V~nLp~~~~~~---~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~ 73 (105)
T 2nlw_A 17 VIVVDNVPQVGPDR---LEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAH 73 (105)
T ss_dssp EEEEESCCCCCTTT---TTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSH
T ss_pred EEEEeCCCcchhhh---hHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHH
Confidence 56788988533220 1114678999999999874 4444 3344 47999999987543
No 120
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=61.95 E-value=15 Score=29.04 Aligned_cols=43 Identities=16% Similarity=0.363 Sum_probs=31.2
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCC
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kd 389 (472)
+.|-|++.. ..+.++|++.|+.|..+....+ .+|++.|+|...
T Consensus 25 l~V~nLp~~--------~~t~~~L~~~F~~~G~v~~v~i-----~~g~afV~f~~~ 67 (97)
T 2xnq_A 25 LFIGNLPLK--------NVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDNP 67 (97)
T ss_dssp EEEESCCSS--------CCCHHHHHHHHGGGSCEEEEEE-----CSSEEEEEESSH
T ss_pred EEEeCCCcc--------cCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECCH
Confidence 557787630 2457889999999998754333 378999999874
No 121
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=61.87 E-value=20 Score=29.43 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=35.5
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+. | .+|++.|+|..-
T Consensus 65 ~l~v~nlp~~---------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 115 (140)
T 2ku7_A 65 VLYVGGLAEE---------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA 115 (140)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCH
T ss_pred EEEEEeCCCC---------CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCH
Confidence 4568888752 3568899999999987 466666543 3 589999999863
No 122
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.49 E-value=15 Score=29.96 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=32.7
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kdw 390 (472)
++.|-|++.. .+.++|++.|+.|.++. ++... ..|+|.|+|..--
T Consensus 12 ~l~V~nLp~~---------~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~ 57 (111)
T 1whx_A 12 VILAKNLPAG---------TLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPL 57 (111)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHH
Confidence 4668888642 36788999999999874 33332 5679999998654
No 123
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.83 E-value=13 Score=29.72 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=33.6
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdw 390 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.... .|++.|+|..--
T Consensus 27 ~l~V~nl~~~---------~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~ 72 (109)
T 1x4g_A 27 TVYCGGIASG---------LTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHE 72 (109)
T ss_dssp EEEEECCSSC---------CCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHH
Confidence 5678888642 3678899999999886 4555543 789999998743
No 124
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=60.24 E-value=7.6 Score=30.11 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=31.7
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|..|..++.. ....-+.|++.|+|...
T Consensus 18 ~l~V~nL~~~---------~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~ 63 (96)
T 1fjc_A 18 TLLAKNLSFN---------ITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSE 63 (96)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCH
Confidence 3557888642 3578899999999665443 22233589999999863
No 125
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=60.04 E-value=11 Score=27.73 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=37.1
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC--CCcceEEEEeCCCchhhHHHHH
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESSAGGYLEAER 398 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~--GH~G~aVVeF~kdwsGF~nA~r 398 (472)
+.|-|++.. .+.++|++.|+.|.++ .++....+. -++|++.|+|.+.- .-..|++
T Consensus 2 l~v~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~Ai~ 59 (75)
T 1iqt_A 2 IFVGGLSPD---------TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE-PVKKIME 59 (75)
T ss_dssp EEESCCCSS---------CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSH-HHHHHHT
T ss_pred EEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHH-HHHHHHH
Confidence 456677642 3578899999999887 455555543 35899999998753 3344443
No 126
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.72 E-value=16 Score=27.43 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=32.1
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|.++. ++... ..|++.|+|..
T Consensus 14 ~l~V~~l~~~---------~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~ 57 (85)
T 2ytc_A 14 TLYVGGLGDT---------ITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFAT 57 (85)
T ss_dssp CEEEECCTTT---------SCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESS
T ss_pred EEEEcCCCCC---------CCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECC
Confidence 4568888642 45788999999998864 45544 36899999986
No 127
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=59.56 E-value=13 Score=30.29 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=31.9
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kd 389 (472)
-.+.|-|++.. .+.++|++.|+.|.++. ++.. .|++.|+|...
T Consensus 32 ~~l~V~nLp~~---------~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~ 75 (108)
T 2jvo_A 32 TRLFVRPFPLD---------VQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEA 75 (108)
T ss_dssp SEEEECSSCTT---------CCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSH
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCH
Confidence 44567888642 35778999999999874 4444 78999999863
No 128
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=59.08 E-value=14 Score=30.91 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=33.0
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccC-cceeEeccCCCCCcceEEEEeCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYA-AVRARHSYGPQGHRGMSVLIFES 388 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~-P~KVr~lyg~~GH~G~aVVeF~k 388 (472)
..++|-|++.. .+.++|++.|+.|. .+....+. .....|++.|+|..
T Consensus 29 ~~l~VgnLp~~---------~te~dL~~~F~~~G~~v~~v~i~-~~~~rGfaFV~F~~ 76 (111)
T 2jvr_A 29 YRITMKNLPEG---------CSWQDLKDLARENSLETTFSSVN-TRDFDGTGALEFPS 76 (111)
T ss_dssp EEEEEECSSCC---------CCHHHHHHHHHHHTCCCSEEECS-SCSSSCCEEEEESS
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHHhCCeeEEEEEE-cCCCCCEEEEEECC
Confidence 46778898742 35788999999998 44332232 12468999999986
No 129
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=58.95 E-value=18 Score=30.94 Aligned_cols=49 Identities=18% Similarity=0.407 Sum_probs=37.0
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCC-CC-CcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~-~G-H~G~aVVeF~kd 389 (472)
..+.|-|++.. .+.++|++.|+.|.++. ++.+... .| .+|++.|+|...
T Consensus 105 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 105 KKIFVGGIKED---------TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp SEEEEECCTTT---------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ceEEEeCCCCC---------CCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 56778898642 35788999999999874 6677665 34 489999999873
No 130
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=58.74 E-value=21 Score=29.52 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=36.5
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~kd 389 (472)
..+.|-|++.. .+.++|++.|+.|.++ .++..... .| .+|++.|+|...
T Consensus 90 ~~l~v~nl~~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 90 TNLYVTNLPRT---------ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCEEEeCCCCC---------CCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 46778898742 3578899999999886 46666655 34 479999999873
No 131
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=58.59 E-value=14 Score=30.65 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=35.8
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. ++.++|++.|+.|.++ .|+.+..+. | ++|+|.|+|..-
T Consensus 44 ~l~V~nLp~~---------~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 94 (139)
T 1u6f_A 44 NLMVNYIPTT---------VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSG 94 (139)
T ss_dssp EEEEESCSTT---------CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 4567788642 3567899999999886 567777654 3 489999999864
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=58.32 E-value=16 Score=28.49 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=33.1
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kdw 390 (472)
.+.|-|++.. .+.++|++.|+.|..+. ++.. -..|++.|+|...-
T Consensus 29 ~l~V~nlp~~---------~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~ 74 (101)
T 2la4_A 29 TAYIGNIPHF---------ATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHE 74 (101)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHH
T ss_pred EEEEcCCCcc---------cCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHH
Confidence 4668888642 35788999999999874 4444 35789999998643
No 133
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=58.16 E-value=16 Score=28.58 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=30.6
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCC
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFES 388 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~k 388 (472)
+.|-|++.. ..+.++|++.|+.|.++.-..+ ..|++.|+|..
T Consensus 13 l~V~nlp~~--------~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~ 54 (96)
T 2kvi_A 13 LFIGNLPLK--------NVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDN 54 (96)
T ss_dssp EEEESSTTS--------CCCHHHHHHHHTTTCCCCEEEE-----ETTEEEEEESC
T ss_pred EEEeCCCcc--------cCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECC
Confidence 457787641 2357889999999998754333 27899999986
No 134
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=58.06 E-value=26 Score=28.68 Aligned_cols=85 Identities=18% Similarity=0.074 Sum_probs=52.1
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC--C-CcceEEEEeCCCchhhHHHHHHHHHHhhcCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--G-HRGMSVLIFESSAGGYLEAERLHKHFAEQGT 408 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~--G-H~G~aVVeF~kdwsGF~nA~rLekhFe~qg~ 408 (472)
+++|.|+.+..+ +.-...++|+++|+.|..+ +|++...+. + ..|++.|+|...-. |.+--+...
T Consensus 10 ~l~l~Nm~~~~~----l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~----A~~Ai~~ln---- 77 (105)
T 2pe8_A 10 VVLLRNMVGAGE----VDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVES----AIKAVVDLN---- 77 (105)
T ss_dssp EEEEESSSCSCC----C---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHH----HHHHHHHHT----
T ss_pred EEEEEcCCChHH----hhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHH----HHHHHHHHC----
Confidence 678889864211 1123478999999999986 566665543 3 38999999987633 322221111
Q ss_pred ChhhhhhhcccccccCCCcceeeeEecccccccc
Q 012025 409 DRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDV 442 (472)
Q Consensus 409 GRkDW~~~~r~~~~~pG~~~~LYGWlAradDyds 442 (472)
|| |. .++.|+--+|..++|..
T Consensus 78 G~--~~-----------~Gr~i~v~~a~~~~f~~ 98 (105)
T 2pe8_A 78 GR--YF-----------GGRVVKACFYNLDKFRV 98 (105)
T ss_dssp TC--EE-----------TTEECEEEECCHHHHHT
T ss_pred CC--EE-----------CCcEEEEEEcCHHHhhh
Confidence 11 11 25678888888877765
No 135
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=57.91 E-value=20 Score=31.13 Aligned_cols=48 Identities=15% Similarity=0.362 Sum_probs=35.4
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. ++.++|++.|+.|.++ .++.+..+ .| ..|++.|+|...
T Consensus 30 ~l~V~nLp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 80 (216)
T 2qfj_A 30 RVYVGSIYYE---------LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP 80 (216)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCH
Confidence 5778898753 3578899999999986 46666655 33 589999999753
No 136
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=57.84 E-value=21 Score=29.69 Aligned_cols=48 Identities=19% Similarity=0.424 Sum_probs=36.1
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+. | ++|++.|+|...
T Consensus 89 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 89 KIFVGGIGPD---------VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp EEEEEEECTT---------CCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred eEEECCCCCC---------CCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 5778888642 3568899999999887 566666642 3 589999999763
No 137
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=57.71 E-value=15 Score=30.93 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=33.6
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kd 389 (472)
-.+.|-|++.. .+.++|++.|+.|..+. ++...+ ++|++.|+|...
T Consensus 74 ~~l~V~nl~~~---------~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~ 120 (150)
T 2i2y_A 74 CKVYVGNLGNN---------GNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDP 120 (150)
T ss_dssp CEEEEESCCSC---------CSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCH
Confidence 35668888653 24577999999998864 555544 688999999864
No 138
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=57.63 E-value=17 Score=32.96 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=35.3
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc---eeEeccCCCCCcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV---RARHSYGPQGHRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~---KVr~lyg~~GH~G~aVVeF~k 388 (472)
++.|-|++.. .+.++|++.|+.|..+ .++.+-...+.+|+++|+|..
T Consensus 125 ~l~v~NLp~~---------~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~ 174 (205)
T 3tyt_A 125 VLHFFNAPLE---------VTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDS 174 (205)
T ss_dssp EEEEEEECTT---------CCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSS
T ss_pred eEEEeCCCCC---------CCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCC
Confidence 4667888642 3578899999999875 566666554557999999986
No 139
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=57.51 E-value=16 Score=29.58 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=35.7
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+. | .+|++.|+|..-
T Consensus 28 ~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 78 (108)
T 2jrs_A 28 RLYVGSLHFN---------ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 78 (108)
T ss_dssp EEEEECCCSS---------CCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 4668888642 3578899999999887 466666643 3 479999999864
No 140
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.32 E-value=19 Score=28.16 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=31.2
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.+..|..+.-. +|++.|+|..-
T Consensus 17 ~l~V~nLp~~---------~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~ 61 (99)
T 2cpd_A 17 ILYVRNLMLS---------TSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNR 61 (99)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCH
Confidence 4668888642 356789999999965444444322 56999999763
No 141
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.28 E-value=20 Score=28.30 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=32.2
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCc-c-eeEec-cCCC--CCcceEEEEeCC
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAA-V-RARHS-YGPQ--GHRGMSVLIFES 388 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P-~-KVr~l-yg~~--GH~G~aVVeF~k 388 (472)
+.|-|++.. .+.++|++.|+.|.+ + .++.+ .... -.+|+|.|+|..
T Consensus 11 l~V~nLp~~---------~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~ 61 (109)
T 2dis_A 11 LFIGGIPKM---------KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYES 61 (109)
T ss_dssp EEEECCCTT---------SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESS
T ss_pred EEEeCCCCc---------CCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecC
Confidence 557888642 357889999999976 5 45444 2332 358999999986
No 142
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=56.72 E-value=1.9 Score=35.62 Aligned_cols=16 Identities=19% Similarity=0.617 Sum_probs=11.5
Q ss_pred eeecCCCCeEEccCCCC
Q 012025 243 EEINEPARQWHCPACQG 259 (472)
Q Consensus 243 kvkn~~~~tf~CP~C~g 259 (472)
+|... ...|+|-++.|
T Consensus 43 KV~R~-KnKWKc~LKdG 58 (79)
T 1nh2_C 43 KVTRT-KARWKCSLKDG 58 (79)
T ss_dssp EEEEE-TTEEEEEEEEE
T ss_pred EEeee-cceEEEEEeee
Confidence 45555 67899988865
No 143
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=56.29 E-value=24 Score=29.44 Aligned_cols=52 Identities=8% Similarity=0.123 Sum_probs=39.0
Q ss_pred CceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCC-CC-CcceEEEEeCCCch
Q 012025 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESSAG 391 (472)
Q Consensus 331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~-~G-H~G~aVVeF~kdws 391 (472)
+..+.|-|++.. .+.++|++.|+.|.++. ++...++ .| .+|++.|+|...-.
T Consensus 94 ~~~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 94 AHKLFIGGLPNY---------LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp TTCEEEECCCTT---------CCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred CCEEEEEcCCCc---------CCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 567888998752 35788999999999874 6666664 44 38999999987543
No 144
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=56.10 E-value=19 Score=31.24 Aligned_cols=47 Identities=17% Similarity=0.470 Sum_probs=35.5
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|..+ .++.+..+ .| +.|++.|+|..
T Consensus 127 ~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 127 RIYVASVHQD---------LSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEEEeCCCCc---------CCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 5678888642 3578899999999987 46666664 34 38999999977
No 145
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=56.10 E-value=13 Score=31.30 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=54.9
Q ss_pred eEEEeecccccC-CCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCCchhhHHHHHHHHHHhhcCCCh
Q 012025 333 MVIIMNTRLDKD-ENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDR 410 (472)
Q Consensus 333 MGIIvNt~te~d-ddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kdwsGF~nA~rLekhFe~qg~GR 410 (472)
+++|.|+.+..+ .+..+.-+=.++|+++|+.|+.+. |++.- ....|++.|+|...- +|.+--+.+. ||
T Consensus 9 vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~--~~~~G~~fV~f~~~e----~A~~Ai~~ln----G~ 78 (114)
T 3s6e_A 9 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDK--NSAQGNVYVKCPSIA----AAIAAVNALH----GR 78 (114)
T ss_dssp EEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECT--TCTTCCEEEECSSHH----HHHHHHHHHT----TC
T ss_pred EEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEec--CCCcEEEEEEECCHH----HHHHHHHHhC----CC
Confidence 688999876443 223344444567788888999874 44432 224899999998642 3332222211 21
Q ss_pred hhhhhhcccccccCCCcceeeeEecccccccccCcc
Q 012025 411 DSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQH 446 (472)
Q Consensus 411 kDW~~~~r~~~~~pG~~~~LYGWlAradDyds~n~h 446 (472)
|. .++.|+--.+..++|...-..
T Consensus 79 --~f-----------~GR~i~v~~~~~~~y~~~fp~ 101 (114)
T 3s6e_A 79 --WF-----------AGKMITAAYVPLPTYHNLFPD 101 (114)
T ss_dssp --EE-----------TTEECEEEEECHHHHHHHCGG
T ss_pred --EE-----------CCEEEEEEEEcHHHHHHhCcc
Confidence 12 257888888888888764333
No 146
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=55.98 E-value=18 Score=33.31 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=39.3
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCCCc
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESSA 390 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~kdw 390 (472)
-.+.|-|++.... +.++|++.|+.|.++ .++......|. +|++.|+|...-
T Consensus 185 ~~l~v~nlp~~~~--------~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 185 RCLCVDRLPPGFN--------DVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp SEEEEECCCTTCC--------CHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred cEEEEecCCcccC--------CHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 4577889875321 357899999999986 67878877786 899999998653
No 147
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.88 E-value=13 Score=29.65 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=33.1
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-----eeEeccCCCCCcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-----RARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-----KVr~lyg~~GH~G~aVVeF~kd 389 (472)
-.+.|-|++.. .+.++|++.|+.|.++ .++.. ..-+.|++.|+|...
T Consensus 26 ~~l~V~nLp~~---------~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~ 77 (115)
T 2cpx_A 26 KVLYLKNLSPR---------VTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNK 77 (115)
T ss_dssp SEEEEECCCTT---------CCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCH
Confidence 35678898742 3567899999998886 33333 334579999999863
No 148
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=55.87 E-value=20 Score=33.06 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=38.0
Q ss_pred eCceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC--C-CcceEEEEeCCC
Q 012025 330 WPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--G-HRGMSVLIFESS 389 (472)
Q Consensus 330 WPWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~--G-H~G~aVVeF~kd 389 (472)
-...+.|.|++... .+.++|++.|+.|.++ .++.+.... | .+|++.|+|...
T Consensus 209 ~~~~l~v~nlp~~~--------~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 209 EGREIMIRNLSTEL--------LDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTTEEEEEEECTTT--------CCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCceEEEECCCccc--------CCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 34677888987530 3568899999999887 466776655 5 489999999764
No 149
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=55.43 E-value=12 Score=28.91 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=33.1
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccC--c-ceeEeccCC-CC-CcceEEEEeCCC
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYA--A-VRARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~--P-~KVr~lyg~-~G-H~G~aVVeF~kd 389 (472)
+.|-|++.. .+.++|++.|+.|. . ..++....+ .| ..|++.|+|...
T Consensus 4 l~V~nL~~~---------~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~ 55 (90)
T 3p5t_L 4 LYIGNLTWW---------TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSE 55 (90)
T ss_dssp CEEESCCTT---------CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CH
T ss_pred EEEeCCCCC---------CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCH
Confidence 457777642 35788999999998 4 467777765 33 489999999753
No 150
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=54.42 E-value=24 Score=30.10 Aligned_cols=47 Identities=13% Similarity=0.276 Sum_probs=35.7
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.+..+. | ++|++.|+|..
T Consensus 15 ~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 64 (196)
T 1l3k_A 15 KLFIGGLSFE---------TTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64 (196)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCC
Confidence 4668898753 3567899999999887 466666653 4 58999999976
No 151
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=53.81 E-value=22 Score=27.68 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=32.8
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kdw 390 (472)
.+.|-|++.. .+.++|++.|+.|.++. ++... ..|++.|+|...-
T Consensus 17 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~~~~----~kg~afV~f~~~~ 62 (99)
T 2cpj_A 17 RLFVGNLPPD---------ITEEEMRKLFEKYGKAGEVFIHK----DKGFGFIRLETRT 62 (99)
T ss_dssp EEEEESCCTT---------CCHHHHHHHTSTTCCCSEEEEET----TTTEEEEECSSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHhhcCCeEEEEEec----CCCEEEEEECCHH
Confidence 5668898742 35678999999998874 44442 2689999998753
No 152
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=53.74 E-value=21 Score=29.58 Aligned_cols=49 Identities=31% Similarity=0.472 Sum_probs=35.7
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kdw 390 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.+..+. | ++|++.|+|..--
T Consensus 5 ~l~v~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 56 (167)
T 2cjk_A 5 KMFIGGLNWD---------TTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPS 56 (167)
T ss_dssp EEEECSCCTT---------CCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHH
Confidence 3567787653 3577899999999886 466666542 3 5899999998753
No 153
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=53.68 E-value=14 Score=37.77 Aligned_cols=50 Identities=20% Similarity=0.427 Sum_probs=37.0
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCCCch
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESSAG 391 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~kdws 391 (472)
+++|-|++.. ++.+.|.+.|..|.++ .|+++.+. .| ..|+|.|+|..--.
T Consensus 104 ~lfV~nL~~~---------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~ 156 (437)
T 3pgw_S 104 TLFVARVNYD---------TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD 156 (437)
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHH
Confidence 5778898642 3567899999999987 56677664 34 48999999976543
No 154
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.47 E-value=21 Score=29.09 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=32.6
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kd 389 (472)
++.|-|++.. .+.++|++.|+.|..+. |+.+.+ .|+|.|+|...
T Consensus 17 ~l~V~nLp~~---------~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~ 61 (101)
T 2cq1_A 17 VLHIRKLPGE---------VTETEVIALGLPFGKVTNILMLKG----KNQAFLELATE 61 (101)
T ss_dssp EEEEESCCTT---------CCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCH
Confidence 4667788632 35788999999999874 555432 79999999874
No 155
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=53.08 E-value=30 Score=28.35 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=35.9
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.+... .| .+|++.|+|...
T Consensus 90 ~l~v~nl~~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 90 NLYVSGLPKT---------MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cEEECCCCCc---------CCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 4678888642 3578899999999886 46666655 34 389999999874
No 156
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=53.04 E-value=24 Score=30.11 Aligned_cols=52 Identities=8% Similarity=0.102 Sum_probs=38.6
Q ss_pred CceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCCCch
Q 012025 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESSAG 391 (472)
Q Consensus 331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~kdws 391 (472)
+-.+.|-|++.. .+.++|++.|+.|.++ .++.+.++ .| ++|++.|+|...-.
T Consensus 114 ~~~l~v~nl~~~---------~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~ 168 (198)
T 2yh0_A 114 AHKLFIGGLPNY---------LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 168 (198)
T ss_dssp CCEEEEECCCTT---------CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHH
Confidence 356778888642 3578899999999987 56777765 44 38999999987654
No 157
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=52.64 E-value=9.5 Score=29.51 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=31.9
Q ss_pred eEEEeecccccCCCCcccccChHHHH----HHhhccCcceeEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELL----EYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLk----d~fsgF~P~KVr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|+ +.|+.|.++....+....-+.|++.|+|..-
T Consensus 10 ~l~V~nLp~~---------~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~ 61 (97)
T 1nu4_A 10 TIYINNLNEK---------IKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEV 61 (97)
T ss_dssp EEEEESCCTT---------SCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCH
Confidence 4668888642 3466777 8999999875433322122468999999864
No 158
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=52.54 E-value=20 Score=29.75 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=35.3
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCC-CC-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~-~G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++....+ .| ++|++.|+|..-
T Consensus 5 ~l~v~nlp~~---------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 55 (168)
T 1b7f_A 5 NLIVNYLPQD---------MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSE 55 (168)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCH
Confidence 3667888752 3577899999999987 46666654 34 579999999853
No 159
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=52.45 E-value=22 Score=26.71 Aligned_cols=44 Identities=14% Similarity=0.306 Sum_probs=30.5
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhcc----C-------cc-eeEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILY----A-------AV-RARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF----~-------P~-KVr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.| . ++ .++.... .|++.|+|..-
T Consensus 8 ~l~V~nLp~~---------~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~ 63 (87)
T 2hzc_A 8 RLYVGNIPFG---------ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSV 63 (87)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCH
Confidence 4568888642 3578899999988 4 33 3444432 78999999873
No 160
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.37 E-value=18 Score=30.87 Aligned_cols=46 Identities=11% Similarity=0.207 Sum_probs=34.7
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCc
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdw 390 (472)
..+.|-|++.. .+.++|++.|+.|..+ .|+.+.+ .|+|.|+|...-
T Consensus 32 ~~LfVgNLp~~---------vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e 78 (119)
T 2ad9_A 32 RVIHIRKLPID---------VTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEE 78 (119)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHH
Confidence 35668888642 3578899999999987 4676654 699999998743
No 161
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=52.32 E-value=22 Score=29.92 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=33.2
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kd 389 (472)
-.+.|.|++.. .+.++|++.|+.|..++.. ....-.+|++.|+|...
T Consensus 100 ~~l~v~nlp~~---------~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 100 RTLLAKNLSFN---------ITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp GEEEEESCCSS---------CCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCH
Confidence 46778898642 3568899999998765543 22233589999999873
No 162
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=52.32 E-value=26 Score=28.61 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=32.1
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~k 388 (472)
++.|-|++.. .+..+|++.|+.|..+. |+.+- ..|+|.|+|..
T Consensus 17 ~l~V~nLp~~---------~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~ 60 (104)
T 1wex_A 17 VVHVRGLCES---------VVEADLVEALEKFGTICYVMMMP----FKRQALVEFEN 60 (104)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECC
Confidence 5678898642 35788999999999875 44443 26899999986
No 163
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=52.29 E-value=18 Score=28.51 Aligned_cols=42 Identities=10% Similarity=0.253 Sum_probs=30.6
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|..|.++. ++.+ .|++.|+|..-
T Consensus 13 ~l~V~nl~~~---------~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~ 55 (103)
T 2dgu_A 13 VLFVRNLANT---------VTEEILEKAFSQFGKLERVKKL------KDYAFIHFDER 55 (103)
T ss_dssp CEEEECCCTT---------CCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCH
Confidence 3568888642 35788999999998865 4433 46999999863
No 164
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.49 E-value=27 Score=26.81 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=30.3
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~k 388 (472)
.+.|-|++.. .+.++|++.|+.|.++. ++.. .+++.|+|..
T Consensus 12 ~l~V~nLp~~---------~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~ 53 (92)
T 2dgt_A 12 KLHVGNISPT---------CTNQELRAKFEEYGPVIECDIV------KDYAFVHMER 53 (92)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESC
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECC
Confidence 3567888642 35788999999999874 4544 3499999986
No 165
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.36 E-value=38 Score=26.11 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=34.3
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCCchhhHHHHH
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kdwsGF~nA~r 398 (472)
+.|-|++.. .+.++|++.|+.|.++.-.+.....|. ++.|+|.. -..-..|+.
T Consensus 11 l~V~nl~~~---------~t~~~l~~~F~~~G~v~~v~~~~~~g~--~afV~f~~-~~~a~~ai~ 63 (94)
T 2e5g_A 11 VFVSGFPRG---------VDSAQLSEYFLAFGPVASVVMDKDKGV--FAIVEMGD-VGAREAVLS 63 (94)
T ss_dssp EEEECCCTT---------CCHHHHHHHGGGTSCEEEEEECSSSCC--EEEEEESS-HHHHHHHHT
T ss_pred EEEECCCCC---------CCHHHHHHHHHhcCCeEEEEEcCCCCc--EEEEEECC-HHHHHHHHh
Confidence 457787642 357889999999998764333333344 99999986 333444443
No 166
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.30 E-value=17 Score=29.83 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=29.2
Q ss_pred cccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCCc
Q 012025 350 TGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 350 ~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kdw 390 (472)
-..+.++|++.|+.|..+. |+++ .-.+|++.|+|...-
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~ 65 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVK 65 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHH
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHH
Confidence 3467899999999999874 4444 346899999998743
No 167
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=51.04 E-value=16 Score=29.82 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=26.3
Q ss_pred HHHHHh-hccCcc-eeEeccCCCCC-cceEEEEeCCCch
Q 012025 356 ELLEYF-ILYAAV-RARHSYGPQGH-RGMSVLIFESSAG 391 (472)
Q Consensus 356 eLkd~f-sgF~P~-KVr~lyg~~GH-~G~aVVeF~kdws 391 (472)
+|+++| +.|+++ ++++..+..|+ +|++.|+|...-.
T Consensus 42 dl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~ 80 (104)
T 1jmt_A 42 EVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 80 (104)
T ss_dssp HHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHH
T ss_pred HHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHH
Confidence 344455 899987 57777776665 8999999986544
No 168
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.43 E-value=18 Score=30.40 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=33.3
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kd 389 (472)
..+.|-|++.. .+.++|++.|+.|..+ .|+.+.+ .|++.|+|...
T Consensus 17 ~~LfV~nLp~~---------vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~ 62 (105)
T 1sjq_A 17 RVIHIRKLPID---------VTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTE 62 (105)
T ss_dssp CEEEECSCCTT---------SCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCH
Confidence 34567788642 3577899999999986 4666643 68999999873
No 169
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=49.84 E-value=16 Score=30.92 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=35.9
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC--CCcceEEEEeCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFES 388 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~--GH~G~aVVeF~k 388 (472)
-.+.|-|++.. .+.++|++.|+.|.++ .++....+. -.+|++.|+|..
T Consensus 48 ~~l~V~nLp~~---------~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~ 98 (135)
T 2lea_A 48 TSLKVDNLTYR---------TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 98 (135)
T ss_dssp CCEEEECCCSS---------CHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSC
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECC
Confidence 35778898742 3568899999999987 566666542 358999999986
No 170
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=48.13 E-value=24 Score=32.43 Aligned_cols=46 Identities=13% Similarity=0.266 Sum_probs=33.6
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kd 389 (472)
.++.|-|++.. .+.++|++.|+.|..+. |+.+. +..|++.|+|...
T Consensus 208 ~~l~v~nl~~~---------~~~~~l~~~F~~~G~i~~v~~~~---~~~g~afV~f~~~ 254 (282)
T 3pgw_A 208 HILFLTNLPEE---------TNELMLSMLFNQFPGFKEVRLVP---GRHDIAFVEFDNE 254 (282)
T ss_pred CEEEEeCCCCc---------CCHHHHHHHHHhcCCeEEEEEec---CCCcEEEEEeCCH
Confidence 45778888642 35788999999998875 45553 3358999999874
No 171
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.83 E-value=12 Score=28.76 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=31.7
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCc-ceeEeccCCCCCcceEEEEeCCC
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAA-VRARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P-~KVr~lyg~~GH~G~aVVeF~kd 389 (472)
+.|-|++.. .+.++|++.|+.|.. +....+- ..|++.|+|...
T Consensus 11 l~V~nLp~~---------~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~ 54 (93)
T 2cqh_A 11 LYIGNLSPA---------VTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQ 54 (93)
T ss_dssp EEEECCCTT---------CCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCH
T ss_pred EEEeCCCCC---------CCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCH
Confidence 557888642 357889999999998 5544442 478999999863
No 172
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=47.50 E-value=19 Score=30.41 Aligned_cols=87 Identities=18% Similarity=0.151 Sum_probs=53.2
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCC-----CC-cceEEEEeCCCchhhHHHHHHHHHHhh
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-----GH-RGMSVLIFESSAGGYLEAERLHKHFAE 405 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~-----GH-~G~aVVeF~kdwsGF~nA~rLekhFe~ 405 (472)
+++|.|+.+..+=+. .-.++|+++|+.|.++. |++.-.+. ++ .|++.|+|...- +|.+--+.+.
T Consensus 22 vl~L~Nm~~~~el~d----dleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e----~A~~Ai~~Ln- 92 (118)
T 3ue2_A 22 VMVLRNMVDPKDIDD----DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIAS----ETHKAIQALN- 92 (118)
T ss_dssp EEEEESCSCGGGCCT----THHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHH----HHHHHHHHHT-
T ss_pred EEEEECCCCHHHHHH----HHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHH----HHHHHHHHHC-
Confidence 478889865322111 12578999999999974 66655443 23 599999998753 3333222221
Q ss_pred cCCChhhhhhhcccccccCCCcceeeeEecccccccccC
Q 012025 406 QGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFN 444 (472)
Q Consensus 406 qg~GRkDW~~~~r~~~~~pG~~~~LYGWlAradDyds~n 444 (472)
|| |. .++.|..-++..++|...|
T Consensus 93 ---Gr--~f-----------~GR~i~v~~~~~~~f~~~~ 115 (118)
T 3ue2_A 93 ---GR--WF-----------AGRKVVAEVYDQERFDNSD 115 (118)
T ss_dssp ---TC--EE-----------TTEECEEEEECHHHHHTTC
T ss_pred ---CC--EE-----------CCcEEEEEEcChHhccccc
Confidence 22 22 2577888888888887643
No 173
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=46.69 E-value=9.2 Score=22.05 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=16.2
Q ss_pred CeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+.|.|+.|+. . |.....|.+|-.
T Consensus 1 ~~~~C~~C~k-----~-f~~~~~l~~H~~ 23 (29)
T 2m0f_A 1 GPLKCRECGK-----Q-FTTSGNLKRHLR 23 (29)
T ss_dssp CCEECTTTSC-----E-ESCHHHHHHHHH
T ss_pred CCccCCCCCC-----c-cCChhHHHHHHH
Confidence 3689999963 2 555778888843
No 174
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.38 E-value=38 Score=26.02 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=32.3
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eE-eccCCCCCcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-AR-HSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr-~lyg~~GH~G~aVVeF~kd 389 (472)
..+.|-|++.. .+.++|++.|+.|.++. ++ ....+ .+|.+.|+|...
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~~~~i~~~~--~~~~afV~f~~~ 64 (96)
T 2e44_A 16 RKLQIRNIPPH---------LQWEVLDSLLVQYGVVESCEQVNTDS--ETAVVNVTYSSK 64 (96)
T ss_dssp CCEEEEEECSS---------SCHHHHHHHHHHHSCEEEEEEECCSS--SSEEEEEEESSH
T ss_pred CEEEEEcCCCC---------CCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEECCH
Confidence 34668898742 35778999999999875 42 44433 345599999864
No 175
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=46.16 E-value=23 Score=32.87 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=39.5
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccC--c-ceeEeccCC-CC-CcceEEEEeCCCchhhHHHHH
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYA--A-VRARHSYGP-QG-HRGMSVLIFESSAGGYLEAER 398 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~--P-~KVr~lyg~-~G-H~G~aVVeF~kdwsGF~nA~r 398 (472)
.+.|-|++.. .+.++|++.|+.|. . ..|+++..+ .| ..|++.|+|...-. -..|+.
T Consensus 70 ~lfVgnL~~~---------~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~-a~~Ai~ 130 (229)
T 3q2s_C 70 ALYIGNLTWW---------TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEAS-SKKLMD 130 (229)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTH-HHHHHT
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHH-HHHHHH
Confidence 3568888643 35678999999998 3 467777775 34 48999999987643 344444
No 176
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=46.08 E-value=10 Score=21.95 Aligned_cols=22 Identities=18% Similarity=0.593 Sum_probs=15.8
Q ss_pred CeEEccCCCCCCCCccccCCchHHhhhh
Q 012025 250 RQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
..|.|+.|+. . |.....|..|-
T Consensus 2 k~~~C~~C~k-----~-f~~~~~l~~H~ 23 (27)
T 2kvh_A 2 KPFSCSLCPQ-----R-SRDFSAMTKHL 23 (27)
T ss_dssp CCEECSSSSC-----E-ESSHHHHHHHH
T ss_pred cCccCCCcCh-----h-hCCHHHHHHHH
Confidence 5799999963 2 55567788874
No 177
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.70 E-value=32 Score=26.32 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=30.4
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++. ++.. .+++.|+|...
T Consensus 11 ~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~ 53 (90)
T 2dnp_A 11 KIFVGNVSAA---------CTSQELRSLFERRGRVIECDVV------KDYAFVHMEKE 53 (90)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCH
Confidence 3568888642 35788999999999864 4444 34999999853
No 178
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=44.51 E-value=31 Score=30.04 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=34.6
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccC--c-ceeEeccCC-CC-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYA--A-VRARHSYGP-QG-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~--P-~KVr~lyg~-~G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|. . ..|+.+.++ .| ..|++.|+|...
T Consensus 57 ~lfVgnLp~~---------~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~ 109 (156)
T 3n9u_C 57 AVYVGSFSWW---------TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASE 109 (156)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCH
Confidence 5667787642 35788999999998 3 356676664 34 489999999753
No 179
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=44.28 E-value=40 Score=27.60 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=35.4
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.|.++ .++.+..+. | .+|++.|+|...
T Consensus 89 ~l~v~nl~~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 139 (166)
T 3md3_A 89 NLFVGDLNVN---------VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 139 (166)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred eEEECCCCCC---------CCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCH
Confidence 5678888642 3568899999999986 466666533 3 478999999864
No 180
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=43.84 E-value=11 Score=21.70 Aligned_cols=23 Identities=17% Similarity=0.544 Sum_probs=16.4
Q ss_pred CeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
..|.|+.|+. . |.....|..|-.
T Consensus 2 k~~~C~~C~~-----~-f~~~~~l~~H~~ 24 (30)
T 2m0d_A 2 KPYQCDYCGR-----S-FSDPTSKMRHLE 24 (30)
T ss_dssp CCEECTTTCC-----E-ESCHHHHHHHHH
T ss_pred cCccCCCCCc-----c-cCCHHHHHHHHH
Confidence 5799999963 2 555677888843
No 181
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=43.50 E-value=27 Score=30.20 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=36.5
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCchhhHHHHH
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdwsGF~nA~r 398 (472)
.+.|-|++.. ..+.++|++.|+.|.++ .++.+..+ .|++.|+|...-. -..|++
T Consensus 5 ~l~v~nlp~~--------~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~-a~~A~~ 59 (198)
T 1qm9_A 5 VLLVSNLNPE--------RVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQ-AQLAMS 59 (198)
T ss_dssp EEEEECCCSS--------SCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHH-HHHHHH
T ss_pred EEEEeCCCcc--------cCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHH-HHHHHH
Confidence 4667787641 13468899999999886 46666654 6799999986432 334443
No 182
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=43.26 E-value=19 Score=29.27 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEccCCCCCCCCccccCCchHHhhhhcc-cC---c-----hhhhhHHHHHHHHHH
Q 012025 252 WHCPACQGGPGAIDWYRGLQPLMTHAKT-KG---S-----KRVKLHRELAELLDE 297 (472)
Q Consensus 252 f~CP~C~gkkk~~D~Y~~lk~LLqHA~g-vG---a-----k~kalHrALa~lLe~ 297 (472)
=.||||..+-..+| |+|.. ||.+=.+ .| . --...||.|++-+..
T Consensus 9 k~C~fc~~~~~~iD-Yknv~-lL~~Fis~~GkIlprr~TGlc~k~QR~l~~AIKr 61 (75)
T 3i1m_R 9 KFCRFTAEGVQEID-YKDIA-TLKNYITESGKIVPSRITGTRAKYQRQLARAIKR 61 (75)
T ss_dssp -----------CCS-TTCHH-HHGGGBCTTCCBCCHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCcCC-cCCHH-HHHHHcCcCCCCcCccccccCHHHHHHHHHHHHH
Confidence 46999987766689 99554 5555333 34 1 223667777776663
No 183
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=42.21 E-value=13 Score=23.20 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=17.2
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|.+|-.
T Consensus 9 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 32 (37)
T 1p7a_A 9 IKPFQCPDCDR-----S-FSRSDHLALHRK 32 (37)
T ss_dssp SSSBCCTTTCC-----C-BSSHHHHHHHHG
T ss_pred CCCccCCCCCc-----c-cCcHHHHHHHHH
Confidence 57899999963 2 554678888843
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=42.04 E-value=31 Score=31.06 Aligned_cols=46 Identities=15% Similarity=0.325 Sum_probs=33.4
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++.. ..+.++|++.|+.|.++ .++.+..+ .|++.|+|..-
T Consensus 36 ~l~V~nLp~~--------~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~ 82 (229)
T 2adc_A 36 VLLVSNLNPE--------RVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADG 82 (229)
T ss_dssp EEEEESCCTT--------TCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCH
T ss_pred EEEEeCCCcc--------cCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCH
Confidence 3668898651 13468899999999886 46666654 67999999863
No 185
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=41.75 E-value=17 Score=38.22 Aligned_cols=36 Identities=17% Similarity=0.378 Sum_probs=28.5
Q ss_pred ChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCCc
Q 012025 353 GNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 353 S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kdw 390 (472)
+-.+|.++|+.|+|+.-.+.|-..|+ +|||+|...-
T Consensus 65 ~~~~l~~y~~~~g~i~~~~~~~~~g~--~~~vef~~~~ 100 (464)
T 3pq1_A 65 SENKFLKYLSQFGPINNHFFYESFGL--YAVVEFCQKE 100 (464)
T ss_dssp --CHHHHHHGGGSCCCCEEEECSSSE--EEEEECC---
T ss_pred CHHHHHHHHHhcCCcceEEEEccCCe--EEEEEeCCHH
Confidence 56789999999999999999988884 9999998753
No 186
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=41.63 E-value=30 Score=28.88 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=32.6
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCccee---E----e-ccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRA---R----H-SYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KV---r----~-lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++.. .+..+|++.|+.|..+.. + + +....-..|++.|.|..-
T Consensus 47 ~l~V~nLp~~---------~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~ 102 (143)
T 3egn_A 47 RIYVKNLAKH---------VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNE 102 (143)
T ss_dssp EEEEEEECTT---------CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCH
Confidence 4678898642 357889999999987642 1 1 111233589999999754
No 187
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=41.25 E-value=50 Score=27.43 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=32.1
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kd 389 (472)
++-|-|++.. .+.++|++.|+.|.++. |+.+- .+|+|.|+|...
T Consensus 23 ~l~V~NLp~~---------~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~ 67 (100)
T 3r27_A 23 VVHIRGLIDG---------VVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDV 67 (100)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCH
Confidence 4557788642 35788999999999874 55543 368999999864
No 188
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=40.12 E-value=33 Score=26.28 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=30.2
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCC
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kd 389 (472)
+.|-|++.. .+.++|++.|+.| ++ .++.. -.+|++.|+|...
T Consensus 8 l~V~nLp~~---------~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~ 50 (88)
T 1wg1_A 8 ILVKNLPQD---------SNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNG 50 (88)
T ss_dssp EEEESCCSS---------CCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCH
T ss_pred EEEeCCCCC---------CCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCH
Confidence 557787642 3578899999999 54 44442 5689999999853
No 189
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.53 E-value=15 Score=22.82 Aligned_cols=24 Identities=17% Similarity=0.484 Sum_probs=17.2
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|..
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 30 (36)
T 2els_A 7 GKIFTCEYCNK-----V-FKFKHSLQAHLR 30 (36)
T ss_dssp CCCEECTTTCC-----E-ESSHHHHHHHHH
T ss_pred CCCEECCCCCc-----e-eCCHHHHHHHHH
Confidence 57899999953 2 554677878853
No 190
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=39.47 E-value=10 Score=29.79 Aligned_cols=57 Identities=18% Similarity=0.012 Sum_probs=37.4
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCC--CCcceEEEEeCCCchhhHHHHH
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ--GHRGMSVLIFESSAGGYLEAER 398 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~--GH~G~aVVeF~kdwsGF~nA~r 398 (472)
-.+.|-|++.. .+.++|++.|+.|.++..+.+.... -..|++.|+|... ..-..|++
T Consensus 18 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~-~~a~~A~~ 76 (101)
T 1fj7_A 18 FNLFIGNLNPN---------KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESA-EDLEKALE 76 (101)
T ss_dssp EEEEEECCCTT---------SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCH-HHHHHHHh
Confidence 35678898742 3578899999998887553343322 2579999999863 33344443
No 191
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=38.84 E-value=27 Score=28.71 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=37.7
Q ss_pred ceEEEeeccc-ccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCchhhHHHHHHHHHHh
Q 012025 332 PMVIIMNTRL-DKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFA 404 (472)
Q Consensus 332 WMGIIvNt~t-e~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdwsGF~nA~rLekhFe 404 (472)
..+-|-|++. . .+..+|++.|+.|..+ .|+.+.+ .|++.|+|...- +|.+--+++.
T Consensus 16 ~~l~V~nLp~~~---------~te~dL~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~----~A~~Ai~~l~ 73 (102)
T 1x4d_A 16 RVVHIMDFQRGK---------NLRYQLLQLVEPFGVISNHLILNK----INEAFIEMATTE----DAQAAVDYYT 73 (102)
T ss_dssp CEEEEESCCCSS---------SHHHHHHTTTGGGSCEEEEEECSS----SSCEEEEESSHH----HHHHHHHHHH
T ss_pred CEEEEeCCCCCc---------CCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHH----HHHHHHHHHc
Confidence 3466788864 2 3467799999999986 4666653 379999998754 4444444443
No 192
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=38.82 E-value=16 Score=21.16 Aligned_cols=23 Identities=22% Similarity=0.561 Sum_probs=16.1
Q ss_pred CeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
..|.|+.|+. . |.....|..|-.
T Consensus 2 k~~~C~~C~k-----~-f~~~~~l~~H~~ 24 (28)
T 2kvf_A 2 RPYSCSVCGK-----R-FSLKHQMETHYR 24 (28)
T ss_dssp CSEECSSSCC-----E-ESCHHHHHHHHT
T ss_pred cCccCCCCCc-----c-cCCHHHHHHHHH
Confidence 5799999953 2 554678888843
No 193
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=38.69 E-value=40 Score=30.01 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=35.2
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC--CCcceEEEEeCCC
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESS 389 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~--GH~G~aVVeF~kd 389 (472)
+.|-|++.. ++.++|++.|+.|.++ .|+.+..+. -+.|++.|+|..-
T Consensus 18 lfVgnLp~~---------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~ 67 (213)
T 4f02_A 18 LYVGDLHPD---------VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 67 (213)
T ss_dssp EEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred EEEeCCCCC---------CCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCH
Confidence 557888753 3567899999999986 467766543 3589999999864
No 194
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.67 E-value=33 Score=26.66 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=26.3
Q ss_pred cChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCC
Q 012025 352 MGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 352 ~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.++|++.|+.|.++.-..+ .-..|++.|+|...
T Consensus 25 ~t~~~l~~~F~~~G~i~~v~i---~~~~g~afV~f~~~ 59 (97)
T 1x5p_A 25 MTPTLLRGAFSPFGNIIDLSM---DPPRNCAFVTYEKM 59 (97)
T ss_dssp CCHHHHHHHHTTTSCEEEEEE---ETTTTEEEEEESSH
T ss_pred CCHHHHHHHHhhCCCEEEEEe---cCCCCEEEEEECCH
Confidence 467889999999998743333 13578999999873
No 195
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=44.84 E-value=6.5 Score=31.84 Aligned_cols=49 Identities=10% Similarity=0.262 Sum_probs=34.2
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcce---------eEeccCCC-C-CcceEEEEeCCCch
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR---------ARHSYGPQ-G-HRGMSVLIFESSAG 391 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K---------Vr~lyg~~-G-H~G~aVVeF~kdws 391 (472)
+.|-|++... +.++|++.|+.|.++. ++....+. | ..|++.|+|...-.
T Consensus 10 l~V~nLp~~~---------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~ 69 (116)
T 2lcw_A 10 IFVQGLGENV---------TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPS 69 (116)
Confidence 4577876432 4566889999999876 56666643 3 47999999986443
No 196
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=38.33 E-value=14 Score=25.96 Aligned_cols=20 Identities=25% Similarity=0.659 Sum_probs=15.4
Q ss_pred eEEccCCCCCCCCccccCCchHHhhh
Q 012025 251 QWHCPACQGGPGAIDWYRGLQPLMTH 276 (472)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~~lk~LLqH 276 (472)
-|-||.|.. + +.....|..|
T Consensus 5 GFiCP~C~~-----~-l~s~~~L~~H 24 (34)
T 3mjh_B 5 GFICPQCMK-----S-LGSADELFKH 24 (34)
T ss_dssp EEECTTTCC-----E-ESSHHHHHHH
T ss_pred ccCCcHHHH-----H-cCCHHHHHHH
Confidence 499999952 4 6667888888
No 197
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=37.48 E-value=37 Score=30.82 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=31.9
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCC
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kd 389 (472)
++|-|++.. .+..+|++.|+.|..++-..++.+ ..+|++.|+|...
T Consensus 49 l~VgNL~~~---------vted~L~~~Fs~fG~V~~V~i~~k-~~rgfAFVeF~d~ 94 (164)
T 1sjr_A 49 IIVENLFYP---------VTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADP 94 (164)
T ss_dssp EEECSCCSC---------CCHHHHHHHHHHHSCEEEEEEEES-SSCEEEEEEESCH
T ss_pred EEEeCcCCC---------CCHHHHHHHHHhcCCEEEEEEEeC-CCCCEEEEEECCH
Confidence 557787532 356789999999999753334322 2468999999764
No 198
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Probab=37.05 E-value=26 Score=29.17 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=27.0
Q ss_pred eEEccCCCCCCCCccccCCchHHhhhhcc-cC---c-----hhhhhHHHHHHHHH
Q 012025 251 QWHCPACQGGPGAIDWYRGLQPLMTHAKT-KG---S-----KRVKLHRELAELLD 296 (472)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~~lk~LLqHA~g-vG---a-----k~kalHrALa~lLe 296 (472)
.=.||||..+-..+| |+|. +||.+=.+ .| . --...||.|++-+.
T Consensus 19 ~k~C~~c~~~~~~iD-YKnv-~lL~~Fise~GkIlprriTGlc~k~QR~l~~AIK 71 (88)
T 2vqe_R 19 KAKVKATLGEFDLRD-YRNV-EVLKRFLSETGKILPRRRTGLSGKEQRILAKTIK 71 (88)
T ss_dssp SCCTTTSCCCEETTC-TTCH-HHHGGGBCSSSCBCCHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCCccCCCCCcCC-cCCH-HHHHHHcccCCCCCchhhcCCCHHHHHHHHHHHH
Confidence 346999987644579 9965 56665443 34 1 22356677666655
No 199
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5
Probab=36.14 E-value=53 Score=28.42 Aligned_cols=81 Identities=12% Similarity=0.197 Sum_probs=39.0
Q ss_pred CceEEEeecccccCCCCcccccChHHHHHHhh-ccCcceeEeccCCCCCcceEEEEeCCCchhhHHHHHHHHHHhhcCCC
Q 012025 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFI-LYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTD 409 (472)
Q Consensus 331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fs-gF~P~KVr~lyg~~GH~G~aVVeF~kdwsGF~nA~rLekhFe~qg~G 409 (472)
|||..|+.+.+-...+.. ...-+..|++.++ .-+.+.+-.+.+..| . +..|-|=.|-.-|+.-.+...|-+++..|
T Consensus 11 ~pm~aViFe~~~~~~~~~-Y~~la~~~~~la~~qpGFI~~Es~~~~dg-~-~is~SyW~deeai~aW~~~~eHr~Aq~~G 87 (122)
T 2go8_A 11 PPYYAVIFSSVKSENDTG-YGETAERMVSLAADQPGFLGVESVREADG-R-GITVSYWDSMDAINHWRHHTEHQAAKEKG 87 (122)
T ss_dssp SCEEEEEEEEECC-------CHHHHHHHHHHHHSTTEEEEEEEECTTS-E-EEEEEEESCHHHHHHHHHHC---------
T ss_pred CCEEEEEEEEEeCCchhH-HHHHHHHHHHHHhhCCCceEEEEEEcCCC-C-EEEEEEeCCHHHHHHHHhCHHHHHHHHhH
Confidence 678777776543333222 3333555666554 222244446777766 3 44556777888899999999999999999
Q ss_pred hhhhh
Q 012025 410 RDSWN 414 (472)
Q Consensus 410 RkDW~ 414 (472)
|..|.
T Consensus 88 r~~w~ 92 (122)
T 2go8_A 88 RSVWY 92 (122)
T ss_dssp ----C
T ss_pred HHHHh
Confidence 99998
No 200
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.87 E-value=17 Score=22.40 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=17.0
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+.+|.|+.|.. . |.....|..|-.
T Consensus 7 ~~~~~C~~C~k-----~-f~~~~~l~~H~~ 30 (36)
T 2elr_A 7 GKTHLCDMCGK-----K-FKSKGTLKSHKL 30 (36)
T ss_dssp CSSCBCTTTCC-----B-CSSHHHHHHHHH
T ss_pred CCCeecCcCCC-----C-cCchHHHHHHHH
Confidence 67899999963 2 554667888743
No 201
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.74 E-value=18 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=16.4
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhh
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
+..|.|+.|.. . |.....|..|-
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~ 29 (36)
T 2elt_A 7 GKPYKCPQCSY-----A-SAIKANLNVHL 29 (36)
T ss_dssp CCSEECSSSSC-----E-ESSHHHHHHHH
T ss_pred CCCCCCCCCCc-----c-cCCHHHHHHHH
Confidence 56899999963 2 55466777774
No 202
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=35.54 E-value=19 Score=20.79 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=15.4
Q ss_pred eEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.|.|+.|+. . |.....|..|-.
T Consensus 2 ~~~C~~C~k-----~-f~~~~~l~~H~~ 23 (29)
T 1rik_A 2 KFACPECPK-----R-FMRSDHLTLHIL 23 (29)
T ss_dssp CEECSSSSC-----E-ESCSHHHHHHHT
T ss_pred CccCCCCCc-----h-hCCHHHHHHHHH
Confidence 589999963 2 554677888854
No 203
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.37 E-value=20 Score=22.30 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=16.3
Q ss_pred CCeEEccCCCCCCCCccccCCc-hHHhhhh
Q 012025 249 ARQWHCPACQGGPGAIDWYRGL-QPLMTHA 277 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~l-k~LLqHA 277 (472)
+..|.|+.|+. . |.-. ..|..|-
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~~L~~H~ 30 (37)
T 2elp_A 7 GRAMKCPYCDF-----Y-FMKNGSDLQRHI 30 (37)
T ss_dssp CCCEECSSSSC-----E-ECSSCHHHHHHH
T ss_pred CCCeECCCCCh-----h-hccCHHHHHHHH
Confidence 57899999963 2 5534 6787874
No 204
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.10 E-value=20 Score=23.29 Aligned_cols=25 Identities=16% Similarity=0.485 Sum_probs=18.1
Q ss_pred CCCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.+..|.|+.|.. . |.....|..|..
T Consensus 9 ~~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (44)
T 2yu5_A 9 GENPFKCSKCDR-----V-FTQRNYLVQHER 33 (44)
T ss_dssp CCCSEECSSSSC-----E-ESSSHHHHHHHH
T ss_pred CCCCeECCCCCc-----h-hCCHHHHHHHhH
Confidence 367899999963 2 555678888854
No 205
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.01 E-value=46 Score=28.01 Aligned_cols=47 Identities=11% Similarity=0.160 Sum_probs=33.9
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCc
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdw 390 (472)
..+.|-|++.. +.+..+|++.|+.|..+ .|+.+- ..|+|.|+|...-
T Consensus 26 ~~l~V~NLp~~--------~~te~~L~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~ 73 (112)
T 1x4f_A 26 RVIHLSNLPHS--------GYSDSAVLKLAEPYGKIKNYILMR----MKSQAFIEMETRE 73 (112)
T ss_dssp CEEEEESCCCS--------SCCSHHHHTTTTTTSCCSEEEEET----TTTEEEEECSSHH
T ss_pred CEEEEeCCCCc--------cCCHHHHHHHHHhcCCEEEEEEec----CCCEEEEEECCHH
Confidence 45667888752 23567899999999986 455542 3689999998754
No 206
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.17 E-value=22 Score=23.44 Aligned_cols=24 Identities=17% Similarity=0.530 Sum_probs=17.8
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eoy_A 10 EKCFKCNKCEK-----T-FSCSKYLTQHER 33 (46)
T ss_dssp SCCEECSSSCC-----E-ESSSHHHHHHHT
T ss_pred CCCEECcCCCC-----c-CCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 207
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.10 E-value=21 Score=21.68 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=16.8
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 5 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 28 (35)
T 2elx_A 5 SSGYVCALCLK-----K-FVSSIRLRSHIR 28 (35)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCeECCCCcc-----h-hCCHHHHHHHHH
Confidence 57899999963 2 554667777743
No 208
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=34.05 E-value=51 Score=28.38 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=31.8
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccC-cc-eeEeccCCCCCcceEEEEeCCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYA-AV-RARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~-P~-KVr~lyg~~GH~G~aVVeF~kd 389 (472)
.++.|-|++.. .+.++|++.|+.|. .+ .++.+.. ..|++.|+|..-
T Consensus 121 ~~l~v~nl~~~---------~~~~~l~~~f~~~G~~v~~v~i~~~---~~g~afV~f~~~ 168 (198)
T 1qm9_A 121 ATLHLSNIPPS---------VSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSV 168 (198)
T ss_dssp CEEEECCCCTT---------CCHHHHHHHHHHTTSCCCEEEESST---TSSCEEEECSSH
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHHcCCCceEEEEEeC---CCcEEEEEeCCH
Confidence 35667787642 35688999999887 44 4555443 368999999773
No 209
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=33.95 E-value=14 Score=21.56 Aligned_cols=22 Identities=23% Similarity=0.702 Sum_probs=15.4
Q ss_pred CeEEccCCCCCCCCccccCCchHHhhhh
Q 012025 250 RQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
..|.|+.|+. . |.....|..|-
T Consensus 2 k~~~C~~C~k-----~-f~~~~~l~~H~ 23 (27)
T 2kvg_A 2 APYRCPLCRA-----G-CPSLASMQAHM 23 (27)
T ss_dssp CTEEETTTTE-----E-ESCHHHHHHHH
T ss_pred cCcCCCCCCc-----c-cCCHHHHHHHH
Confidence 5799999953 2 55466777774
No 210
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=33.90 E-value=20 Score=20.55 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=15.2
Q ss_pred eEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.|.|+.|+.. |.....|..|-.
T Consensus 2 ~~~C~~C~k~------f~~~~~l~~H~~ 23 (30)
T 1klr_A 2 TYQCQYCEFR------SADSSNLKTHIK 23 (30)
T ss_dssp CCCCSSSSCC------CSCSHHHHHHHH
T ss_pred CccCCCCCCc------cCCHHHHHHHHH
Confidence 5889999632 444668888854
No 211
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=33.87 E-value=22 Score=21.76 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=17.3
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|.+|-.
T Consensus 5 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 28 (35)
T 1srk_A 5 KRPFVCRICLS-----A-FTTKANCARHLK 28 (35)
T ss_dssp CSCEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CcCeeCCCCCc-----c-cCCHHHHHHHHH
Confidence 57899999953 2 554678888854
No 212
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.80 E-value=18 Score=20.58 Aligned_cols=21 Identities=24% Similarity=0.672 Sum_probs=14.1
Q ss_pred eEEccCCCCCCCCccccCCchHHhhhh
Q 012025 251 QWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
.|.|+.|+.. |.....|..|-
T Consensus 2 ~~~C~~C~~~------f~~~~~l~~H~ 22 (29)
T 2m0e_A 2 EHKCPHCDKK------FNQVGNLKAHL 22 (29)
T ss_dssp CCCCSSCCCC------CCTTTHHHHHH
T ss_pred CCcCCCCCcc------cCCHHHHHHHH
Confidence 5889999632 44355777774
No 213
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=33.15 E-value=18 Score=20.83 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=14.4
Q ss_pred eEEccCCCCCCCCccccCCchHHhhhh
Q 012025 251 QWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
.|.|+.|+. . |.....|..|-
T Consensus 2 ~~~C~~C~~-----~-f~~~~~l~~H~ 22 (29)
T 1ard_A 2 SFVCEVCTR-----A-FARQEHLKRHY 22 (29)
T ss_dssp CCBCTTTCC-----B-CSSHHHHHHHH
T ss_pred CeECCCCCc-----c-cCCHHHHHHHH
Confidence 589999963 2 44466777774
No 214
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.08 E-value=19 Score=23.47 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=16.6
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhh
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
+..|.|+.|... |.....|..|-
T Consensus 10 ~~~~~C~~C~k~------f~~~~~L~~H~ 32 (44)
T 2eou_A 10 KTTSECQECGKI------FRHSSLLIEHQ 32 (44)
T ss_dssp SCCCCCTTTCCC------CSSHHHHHHHH
T ss_pred CcCeECCCCCcc------cCCHHHHHHHH
Confidence 678999999632 55466777774
No 215
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=32.94 E-value=56 Score=29.90 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=34.2
Q ss_pred eEEEeecccccCCCCcccccChHHHH----HHhhccCcce-eEeccCCCCCcceEEEEeCCCchhhHHHH
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELL----EYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAE 397 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLk----d~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kdwsGF~nA~ 397 (472)
.+.|-|++... +.++|+ +.|+.|..+. ++... ..-++|++.|+|..--. -..|+
T Consensus 11 ~l~V~nlp~~~---------~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~-a~~A~ 69 (282)
T 3pgw_A 11 TIYINNLNEKI---------KKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSS-ATNAL 69 (282)
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHH-HHHHH
Confidence 35688887533 345555 7899998874 44443 33367999999976433 33444
No 216
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.98 E-value=24 Score=23.14 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=18.2
Q ss_pred CCCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.+..|.|+.|+. . |.....|.+|-.
T Consensus 9 ~~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em7_A 9 GEKPYKCEECGK-----G-FICRRDLYTHHM 33 (46)
T ss_dssp CCCSEECSSSCC-----E-ESCHHHHHHHGG
T ss_pred CCcCccCCCccc-----h-hCCHHHHHHHHH
Confidence 367899999963 2 555778888854
No 217
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.96 E-value=22 Score=23.42 Aligned_cols=24 Identities=17% Similarity=0.600 Sum_probs=17.5
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2enh_A 10 EKPYECDVCRK-----A-FSHHASLTQHQR 33 (46)
T ss_dssp SSSCBCTTTCC-----B-CSSSHHHHHHGG
T ss_pred CCCcCCCCcCc-----h-hCCHHHHHHHHH
Confidence 67899999963 2 554678888854
No 218
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.96 E-value=23 Score=23.29 Aligned_cols=25 Identities=20% Similarity=0.537 Sum_probs=17.5
Q ss_pred CCCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.+..|.|+.|.. . |.....|..|-.
T Consensus 9 ~~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em2_A 9 GEKPFKCKECGK-----A-FRQNIHLASHLR 33 (46)
T ss_dssp CCCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCCEECCcCCc-----h-hCCHHHHHHHHH
Confidence 367899999963 2 554667777743
No 219
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.96 E-value=24 Score=21.76 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=16.7
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 30 (36)
T 2elq_A 7 GKPFKCSLCEY-----A-TRSKSNLKAHMN 30 (36)
T ss_dssp CCSEECSSSSC-----E-ESCHHHHHHHHH
T ss_pred CCCccCCCCCc-----h-hCCHHHHHHHHH
Confidence 57899999963 2 554667777743
No 220
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.32 E-value=23 Score=23.30 Aligned_cols=24 Identities=17% Similarity=0.567 Sum_probs=17.0
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|... |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~~ 33 (46)
T 2eoh_A 10 KKPYECKECRKT------FIQIGHLNQHKR 33 (46)
T ss_dssp SCSCCCSSSCCC------CSSHHHHHHHHH
T ss_pred CCCcCCCCcCch------hCCHHHHHHHHH
Confidence 678999999632 444667777843
No 221
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=31.18 E-value=62 Score=29.63 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=32.3
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kdw 390 (472)
.+.|-|++.. .+.++|++.|+.|....++. .-..|++.|+|...-
T Consensus 24 ~l~V~nLp~~---------~te~~l~~~F~~~Gi~~~~~----~~~~g~afV~f~~~~ 68 (284)
T 3smz_A 24 KILIRGLPGD---------VTNQEVHDLLSDYELKYCFV----DKYKGTAFVTLLNGE 68 (284)
T ss_dssp EEEEECCCTT---------CCHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHcCCEEEEE----ecCCCEEEEEeCCHH
Confidence 4678898753 35678999999998444444 335789999997643
No 222
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.16 E-value=25 Score=23.14 Aligned_cols=25 Identities=20% Similarity=0.612 Sum_probs=18.1
Q ss_pred CCCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.+..|.|+.|+. . |.....|..|-.
T Consensus 9 ~~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2ytp_A 9 GERHYECSECGK-----A-FARKSTLIMHQR 33 (46)
T ss_dssp CCCCEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCCeECCcCCc-----c-cCCHHHHHHHHH
Confidence 367899999963 2 555778888854
No 223
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.44 E-value=26 Score=23.05 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=17.7
Q ss_pred CCCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.+..|.|+.|+. . |.....|.+|-.
T Consensus 9 ~~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em8_A 9 GEKPYKCVECGK-----G-YKRRLDLDFHQR 33 (46)
T ss_dssp SCCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCCeECcccCc-----h-hCCHHHHHHHHH
Confidence 367899999963 2 555677888843
No 224
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.33 E-value=73 Score=27.18 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=29.8
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcce-EEEEeCCC
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGM-SVLIFESS 389 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~-aVVeF~kd 389 (472)
+.|-|++.. .+...|.+.|+.|..+. |++ ..+ .|+ |.|+|...
T Consensus 28 l~V~NL~~~---------vt~~~L~~~Fs~yG~V~~v~i-~~~---~Gf~aFVef~~~ 72 (124)
T 2e5i_A 28 LSIQNPLYP---------ITVDVLYTVCNPVGKVQRIVI-FKR---NGIQAMVEFESV 72 (124)
T ss_dssp EEEESCCSC---------CCHHHHHHHHTTTSCEEEEEE-EES---SSEEEEEEESSH
T ss_pred EEEcCcCCC---------CCHHHHHHHHHhcCCEEEEEE-EeC---CCCEEEEEECCH
Confidence 346787532 34668999999999975 554 333 385 99999764
No 225
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.24 E-value=27 Score=21.56 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=17.1
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|.+|-.
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 30 (36)
T 2elv_A 7 GLLYDCHICER-----K-FKNELDRDRHML 30 (36)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCCCCC-----c-cCCHHHHHHHHH
Confidence 57899999963 2 554667888854
No 226
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.12 E-value=21 Score=23.59 Aligned_cols=24 Identities=21% Similarity=0.585 Sum_probs=17.8
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|.+|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eon_A 10 EKPYKCQVCGK-----A-FRVSSHLVQHHS 33 (46)
T ss_dssp CCSCBCSSSCC-----B-CSSHHHHHHHTT
T ss_pred CcccCCCCCCc-----c-cCcHHHHHHHHH
Confidence 67899999963 2 555778888854
No 227
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=30.11 E-value=84 Score=28.17 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=32.2
Q ss_pred ceEEEeecccccCCCCcccccChHHHHHHhhccC-cc-eeEeccCCCCCcceEEEEeCC
Q 012025 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYA-AV-RARHSYGPQGHRGMSVLIFES 388 (472)
Q Consensus 332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~-P~-KVr~lyg~~GH~G~aVVeF~k 388 (472)
.++.|-|++.. .+.++|++.|+.|. .+ .++.+.. ..|++.|+|..
T Consensus 152 ~~l~V~nlp~~---------~t~~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~ 198 (229)
T 2adc_A 152 ATLHLSNIPPS---------VSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGS 198 (229)
T ss_dssp SEEEEECCCTT---------CCHHHHHHHHHTTSCCEEEEEECSS---STTCEEEEESS
T ss_pred CEEEEeCCCcc---------CCHHHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECC
Confidence 56778888642 35688999999997 44 3554432 36899999987
No 228
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.08 E-value=26 Score=22.86 Aligned_cols=25 Identities=20% Similarity=0.615 Sum_probs=17.9
Q ss_pred CCCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.+..|.|+.|.. . |.....|..|-.
T Consensus 9 ~~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ytf_A 9 GEKPFECSECQK-----A-FNTKSNLIVHQR 33 (46)
T ss_dssp CCCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCCcCCCCCCc-----c-cCCHHHHHHHHH
Confidence 367899999963 2 555778888844
No 229
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.97 E-value=27 Score=22.91 Aligned_cols=24 Identities=21% Similarity=0.581 Sum_probs=17.4
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2emi_A 10 ERHYECSECGK-----A-FIQKSTLSMHQR 33 (46)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CCCCCCCCCCc-----c-cCCHHHHHHHHh
Confidence 67899999963 2 554677888844
No 230
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.80 E-value=28 Score=22.75 Aligned_cols=24 Identities=17% Similarity=0.506 Sum_probs=17.7
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (44)
T 2epv_A 10 EKPYECNECGK-----A-FIWKSLLIVHER 33 (44)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CcCeECCCCCc-----c-cCchHHHHHHHh
Confidence 67899999963 2 555778888854
No 231
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.61 E-value=29 Score=22.65 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=17.8
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (47)
T 2epx_A 10 KKPYECIECGK-----A-FIQNTSLIRHWR 33 (47)
T ss_dssp CCSBCCSSSCC-----C-BSSHHHHHHHHT
T ss_pred CCCEECCccCc-----h-hCChHHHHHHhH
Confidence 67899999963 2 555778888854
No 232
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.20 E-value=28 Score=22.61 Aligned_cols=24 Identities=25% Similarity=0.681 Sum_probs=17.8
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (44)
T 2emb_A 10 RKRYECSKCQA-----T-FNLRKHLIQHQK 33 (44)
T ss_dssp CSSEECTTTCC-----E-ESCHHHHHHHGG
T ss_pred CCCeECCCCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 233
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=28.80 E-value=92 Score=28.00 Aligned_cols=48 Identities=13% Similarity=0.314 Sum_probs=34.1
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCch
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSAG 391 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdws 391 (472)
++.|-|++.. .++.++|.+.|+.|..+ +|+.+.. +.|++.|+|...-.
T Consensus 6 ~l~V~nL~~~--------~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~ 54 (205)
T 3tyt_A 6 VLMVYGLDQS--------KMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYA 54 (205)
T ss_dssp EEEEECCCTT--------TCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHH
T ss_pred EEEEeCCCcc--------cCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHH
Confidence 4567787521 13567899999999986 4666654 47899999987543
No 234
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=28.75 E-value=73 Score=28.57 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=30.5
Q ss_pred cChHHHHHHhhccCcc-eeEeccCCCC--CcceEEEEeCC
Q 012025 352 MGNQELLEYFILYAAV-RARHSYGPQG--HRGMSVLIFES 388 (472)
Q Consensus 352 ~S~~eLkd~fsgF~P~-KVr~lyg~~G--H~G~aVVeF~k 388 (472)
.+...|+++|+.|+.+ .++..+.+.. ..|++.|+|..
T Consensus 18 tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 18 IQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 4678899999999996 5777877764 49999999995
No 235
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.58 E-value=30 Score=22.67 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=18.0
Q ss_pred CCCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.+..|.|+.|+. . |.....|..|-.
T Consensus 9 ~~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2eq0_A 9 GEKPYKCHECGK-----V-FRRNSHLARHQL 33 (46)
T ss_dssp CCCCEECTTTCC-----E-ESSHHHHHHHHT
T ss_pred CCCCeECCCCCc-----h-hCCHHHHHHHHH
Confidence 367899999963 2 555677888854
No 236
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.27 E-value=27 Score=22.98 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=18.0
Q ss_pred CCCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.+..|.|+.|+. . |.....|..|-.
T Consensus 9 ~~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2elz_A 9 VEKPYKCEDCGK-----G-YNRRLNLDMHQR 33 (46)
T ss_dssp CCSSCBCSSSCC-----B-CSSHHHHHHHGG
T ss_pred CCCCeeCcccCc-----h-hCCHHHHHHHHH
Confidence 367899999963 2 554678888854
No 237
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.06 E-value=29 Score=22.77 Aligned_cols=24 Identities=17% Similarity=0.473 Sum_probs=17.4
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2enf_A 10 EKPYKCNECGK-----V-FTQNSHLVRHRG 33 (46)
T ss_dssp CCSCBCSSSCC-----B-CSSHHHHHHHHT
T ss_pred CcCeECCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554677888854
No 238
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.01 E-value=24 Score=20.51 Aligned_cols=20 Identities=20% Similarity=0.589 Sum_probs=14.5
Q ss_pred eEEccCCCCCCCCccccCCchHHhhh
Q 012025 251 QWHCPACQGGPGAIDWYRGLQPLMTH 276 (472)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~~lk~LLqH 276 (472)
.|.|+.|+. . |.....|.+|
T Consensus 2 ~~~C~~C~k-----~-f~~~~~l~~H 21 (30)
T 1paa_A 2 AYACGLCNR-----A-FTRRDLLIRH 21 (30)
T ss_dssp CSBCTTTCC-----B-CSSSHHHHHH
T ss_pred CcCCcccCc-----c-cCChHHHHHH
Confidence 588999963 2 5546788888
No 239
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.90 E-value=29 Score=22.74 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=17.4
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2epz_A 10 EKPFDCIDCGK-----A-FSDHIGLNQHRR 33 (46)
T ss_dssp CCSBCCTTTCC-----C-BSSHHHHHHHHT
T ss_pred CCCeECCCCCc-----e-eCCHHHHHHHHH
Confidence 67899999963 2 554677888854
No 240
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.81 E-value=33 Score=22.46 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=16.6
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhh
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
+..|.|+.|.. . |.....|..|-
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~ 32 (46)
T 2en3_A 10 EKPFQCKECGM-----N-FSWSCSLFKHL 32 (46)
T ss_dssp CCSEECSSSCC-----E-ESSSHHHHHHH
T ss_pred CCCeeCcccCh-----h-hCCHHHHHHHH
Confidence 67899999963 2 55466777774
No 241
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.64 E-value=29 Score=22.76 Aligned_cols=25 Identities=12% Similarity=0.442 Sum_probs=17.8
Q ss_pred CCCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.+..|.|+.|+. . |.....|..|-.
T Consensus 9 ~~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2enc_A 9 GEKPFKCEECGK-----G-FYTNSQCYSHQR 33 (46)
T ss_dssp CCCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCCcCCCCCCC-----c-CCChHHHHHHHH
Confidence 367899999963 2 555778888843
No 242
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.46 E-value=31 Score=22.61 Aligned_cols=25 Identities=20% Similarity=0.567 Sum_probs=18.2
Q ss_pred CCCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.+..|.|+.|.. . |.....|.+|-.
T Consensus 9 ~~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ep0_A 9 GEKPYKCDVCHK-----S-FRYGSSLTVHQR 33 (46)
T ss_dssp TCCSEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCCeeCcccCc-----c-cCChHHHHHHHH
Confidence 368899999963 2 555778888854
No 243
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=27.26 E-value=25 Score=19.95 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=14.5
Q ss_pred eEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.|.|+.|+. . |.....|..|-.
T Consensus 1 ~~~C~~C~k-----~-f~~~~~l~~H~~ 22 (27)
T 1znf_A 1 XYKCGLCER-----S-FVEKSALSRHQR 22 (27)
T ss_dssp -CBCSSSCC-----B-CSSHHHHHHHGG
T ss_pred CccCCCCCC-----c-CCCHHHHHHHHH
Confidence 378999963 2 554667888853
No 244
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.23 E-value=29 Score=22.77 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=17.6
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2emg_A 10 ENPFICSECGK-----V-FTHKTNLIIHQK 33 (46)
T ss_dssp CCSCBCTTTCC-----B-CSSHHHHHHHHT
T ss_pred CCCEECCccCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555678888854
No 245
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.14 E-value=31 Score=22.53 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=17.7
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2yts_A 10 EKPYICNECGK-----S-FIQKSHLNRHRR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHGG
T ss_pred CcCEECCCCCh-----h-hCChHHHHHHHH
Confidence 67899999963 2 555778888854
No 246
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.08 E-value=22 Score=22.06 Aligned_cols=24 Identities=25% Similarity=0.718 Sum_probs=17.0
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 30 (37)
T 2elo_A 7 GRSYSCPVCEK-----S-FSEDRLIKSHIK 30 (37)
T ss_dssp CCCCEETTTTE-----E-CSSHHHHHHHHH
T ss_pred CCCcCCCCCCC-----c-cCCHHHHHHHHH
Confidence 57899999963 2 554667877743
No 247
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=26.95 E-value=79 Score=27.45 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=30.8
Q ss_pred EEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcce-EEEEeCCC
Q 012025 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGM-SVLIFESS 389 (472)
Q Consensus 334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~-aVVeF~kd 389 (472)
++|-|.+.. .+..+|.+.|+.|..+. |++.- + ..|+ +.|+|...
T Consensus 31 I~V~NL~~~---------vte~~L~~lFs~yG~V~~V~i~~-~--~~gfqAFVef~~~ 76 (130)
T 3zzy_A 31 IIVENLFYP---------VTLDVLHQIFSKFGTVLKIITFT-K--NNQFQALLQYADP 76 (130)
T ss_dssp EEEESCCSC---------CCHHHHHHHHTTSSCEEEEEEEE-E--TTEEEEEEEESCH
T ss_pred EEECCCCCC---------CCHHHHHHHHhCcCCEEEEEEEc-C--CCCcEEEEEECCH
Confidence 568887532 35678999999999975 54433 2 2466 99999754
No 248
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=26.81 E-value=30 Score=21.85 Aligned_cols=24 Identities=29% Similarity=0.706 Sum_probs=17.1
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|.+|-.
T Consensus 4 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 27 (39)
T 1njq_A 4 PRSYTCSFCKR-----E-FRSAQALGGHMN 27 (39)
T ss_dssp SSSEECTTTCC-----E-ESSHHHHHHHHH
T ss_pred CCceECCCCCc-----c-cCCHHHHHHHHH
Confidence 57899999963 2 554667888854
No 249
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=26.61 E-value=18 Score=29.85 Aligned_cols=11 Identities=36% Similarity=1.072 Sum_probs=9.4
Q ss_pred CeEEccCCCCC
Q 012025 250 RQWHCPACQGG 260 (472)
Q Consensus 250 ~tf~CP~C~gk 260 (472)
.++|||.|++-
T Consensus 25 ~~LRCp~Cqnq 35 (84)
T 2hl7_A 25 QELRCPKCQNQ 35 (84)
T ss_dssp HHEECTTSSSC
T ss_pred HcCcCCCCCCC
Confidence 57999999984
No 250
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=26.44 E-value=33 Score=22.49 Aligned_cols=24 Identities=21% Similarity=0.714 Sum_probs=17.8
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2el6_A 10 VNPYKCSQCEK-----S-FSGKLRLLVHQR 33 (46)
T ss_dssp CCSEECSSSSC-----E-ESSHHHHHHHHG
T ss_pred CCCeECCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 251
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=26.41 E-value=33 Score=22.33 Aligned_cols=24 Identities=21% Similarity=0.635 Sum_probs=17.8
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em9_A 10 EKPYNCKECGK-----S-FRWASCLLKHQR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHGG
T ss_pred CcCeECCcccc-----c-cCChHHHHHHHH
Confidence 67899999963 2 555778888854
No 252
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.40 E-value=33 Score=21.84 Aligned_cols=24 Identities=25% Similarity=0.634 Sum_probs=17.7
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 8 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 31 (41)
T 2ept_A 8 QRVYECQECGK-----S-FRQKGSLTLHER 31 (41)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHGG
T ss_pred CCCeECCCCCC-----C-cCCHHHHHHHHH
Confidence 57899999963 2 555678888854
No 253
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.33 E-value=29 Score=22.72 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=17.2
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|... |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------F~~~~~L~~H~~ 33 (46)
T 2yti_A 10 EKPYKCNECGKV------FTQNSHLARHRG 33 (46)
T ss_dssp CCTTCCSSSCCC------CSSHHHHHHHHT
T ss_pred CcCeECCCCCcc------cCChhHHHHHhH
Confidence 678999999632 554667888854
No 254
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.26 E-value=34 Score=22.43 Aligned_cols=24 Identities=21% Similarity=0.641 Sum_probs=17.0
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em4_A 10 QRPYECIECGK-----A-FKTKSSLICHRR 33 (46)
T ss_dssp SSSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CcCcCCCCCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554667777743
No 255
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=26.25 E-value=10 Score=31.09 Aligned_cols=16 Identities=13% Similarity=0.306 Sum_probs=11.4
Q ss_pred eeecCCCCeEEccCCCC
Q 012025 243 EEINEPARQWHCPACQG 259 (472)
Q Consensus 243 kvkn~~~~tf~CP~C~g 259 (472)
||..+ ...|+|-++.|
T Consensus 41 KV~R~-KnkWKc~LKdG 56 (76)
T 1nvp_C 41 KIHRS-KNKWKFHLKDG 56 (76)
T ss_dssp EEEEE-TTEEEEEEEEE
T ss_pred EEecc-CceEEEEEecc
Confidence 45555 67899988765
No 256
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.25 E-value=35 Score=22.34 Aligned_cols=24 Identities=21% Similarity=0.571 Sum_probs=17.2
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|.+|-.
T Consensus 10 ~~~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2em3_A 10 EKPYECKVCSK-----A-FTQKAHLAQHQK 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CcCeECCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554677777843
No 257
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.20 E-value=36 Score=22.16 Aligned_cols=24 Identities=17% Similarity=0.534 Sum_probs=17.5
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2yrj_A 10 EKPYRCGECGK-----A-FAQKANLTQHQR 33 (46)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCCCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555677888854
No 258
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.14 E-value=32 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.602 Sum_probs=17.6
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+.. |.....|..|-.
T Consensus 9 ~k~~~C~~C~k~------f~~~~~L~~H~~ 32 (42)
T 2ytb_A 9 EKPYRCDQCGKA------FSQKGSLIVHIR 32 (42)
T ss_dssp CCSBCCTTTTCC------BSSHHHHHTTGG
T ss_pred CCCeeCCCccch------hCCHHHHHHHHH
Confidence 678999999632 555678888854
No 259
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.13 E-value=35 Score=22.20 Aligned_cols=24 Identities=21% Similarity=0.607 Sum_probs=17.2
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eow_A 10 EKPYKCNECGK-----A-FRARSSLAIHQA 33 (46)
T ss_dssp CCCEECTTSCC-----E-ESSHHHHHHHHH
T ss_pred CCCeeccccCC-----h-hcCHHHHHHHHH
Confidence 67899999963 2 555677777743
No 260
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.89 E-value=26 Score=23.03 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=16.8
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhh
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
+..|.|+.|+. . |.....|..|-
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~ 32 (46)
T 2eoz_A 10 EKPYSCNVCGK-----A-FVLSAHLNQHL 32 (46)
T ss_dssp CCSEEETTTTE-----E-ESSHHHHHHHH
T ss_pred CCCeECcccCh-----h-hCCHHHHHHHH
Confidence 67899999963 2 55567777774
No 261
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=25.86 E-value=36 Score=22.30 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=16.9
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+.. |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~~ 33 (46)
T 2ely_A 10 EKPFKCVECGKG------FSRRSALNVHHK 33 (46)
T ss_dssp CCSBCCSSSCCC------BSSTTHHHHHHH
T ss_pred CCCcccCccCcc------cCCHHHHHHHHH
Confidence 678999999632 444667777743
No 262
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=31.75 E-value=14 Score=21.42 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=15.3
Q ss_pred CeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
..|.|+.|+.. |.....|..|-.
T Consensus 2 k~~~C~~C~k~------f~~~~~l~~H~~ 24 (30)
T 2lvr_A 2 KPYVCIHCQRQ------FADPGALQRHVR 24 (30)
Confidence 46899999632 444567777743
No 263
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.65 E-value=31 Score=22.67 Aligned_cols=25 Identities=16% Similarity=0.518 Sum_probs=18.1
Q ss_pred CCCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.+..|.|+.|+. . |.....|..|-.
T Consensus 9 ~~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ytq_A 9 GEKPYGCSECGK-----A-FSSKSYLIIHMR 33 (46)
T ss_dssp CCCSCBCSSSCC-----B-CSCHHHHHHHHT
T ss_pred CCCCcCCCccCh-----h-hCChHHHHHHHH
Confidence 367899999963 2 555778888854
No 264
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.36 E-value=37 Score=22.36 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=17.0
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|... |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------F~~~~~L~~H~~ 33 (46)
T 2eom_A 10 ERGHRCSDCGKF------FLQASNFIQHRR 33 (46)
T ss_dssp CSSCCCSSSCCC------CSSHHHHHHHHH
T ss_pred CCCcCCCCCCCe------eCChHHHHHHHH
Confidence 678999999632 554667877743
No 265
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.36 E-value=28 Score=22.80 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=17.9
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ysp_A 10 EKPYKCEKCGK-----G-YNSKFNLDMHQK 33 (46)
T ss_dssp CCSEEETTTTE-----E-ESCHHHHHHHHT
T ss_pred CCCeECCCCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 266
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=25.31 E-value=59 Score=26.95 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=26.2
Q ss_pred cChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCC
Q 012025 352 MGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 352 ~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.++|++.|+.|.++. ++.. -..|++.|+|..-
T Consensus 49 ~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~ 83 (121)
T 2bz2_A 49 MTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKM 83 (121)
T ss_dssp CCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSH
T ss_pred CCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCH
Confidence 46788999999999874 4442 4578999999863
No 267
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.28 E-value=30 Score=22.77 Aligned_cols=24 Identities=17% Similarity=0.580 Sum_probs=17.0
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2en9_A 10 KKLFKCNECKK-----T-FTQSSSLTVHQR 33 (46)
T ss_dssp SCCCBCTTTCC-----B-CSSHHHHHHHHH
T ss_pred CCCEECCccCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554667777743
No 268
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.19 E-value=31 Score=21.69 Aligned_cols=22 Identities=18% Similarity=0.316 Sum_probs=16.1
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhh
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTH 276 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqH 276 (472)
+..|.|+.|.. . |.....|..|
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~L~~H 28 (37)
T 2elm_A 7 GHLYYCSQCHY-----S-SITKNCLKRH 28 (37)
T ss_dssp SCEEECSSSSC-----E-EECHHHHHHH
T ss_pred CcCeECCCCCc-----c-cCCHHHHHHH
Confidence 57899999963 2 5546677777
No 269
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.13 E-value=35 Score=22.42 Aligned_cols=24 Identities=21% Similarity=0.587 Sum_probs=17.7
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2emf_A 10 GKHFECTECGK-----A-FTRKSTLSMHQK 33 (46)
T ss_dssp SCCEECSSSCC-----E-ESCHHHHHHHGG
T ss_pred CCCeECCCCCc-----h-hCCHHHHHHHHH
Confidence 67899999963 2 555678888854
No 270
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.09 E-value=33 Score=21.91 Aligned_cols=24 Identities=17% Similarity=0.542 Sum_probs=17.3
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 9 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 32 (42)
T 2en2_A 9 EKPYKCETCGA-----R-FVQVAHLRAHVL 32 (42)
T ss_dssp SCSEECTTTCC-----E-ESSHHHHHHHTH
T ss_pred CCCEeCCCcCh-----h-hCCHHHHHHHHH
Confidence 67899999963 2 554677888843
No 271
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.06 E-value=35 Score=22.37 Aligned_cols=23 Identities=26% Similarity=0.614 Sum_probs=16.4
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhh
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
+..|.|+.|... |.....|..|-
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~ 32 (46)
T 2emz_A 10 ERPFKCNECGKG------FGRRSHLAGHL 32 (46)
T ss_dssp CCSCCCSSSCCC------CSSHHHHHHHH
T ss_pred CCCeECCCCCcc------cCCHHHHHHHH
Confidence 678999999632 55466777774
No 272
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.04 E-value=37 Score=22.26 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=17.8
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em5_A 10 TKSHQCHECGR-----G-FTLKSHLNQHQR 33 (46)
T ss_dssp SCSEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCcCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 273
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.02 E-value=34 Score=22.35 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=17.5
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ene_A 10 EKPYKCNECGK-----V-FRHNSYLSRHQR 33 (46)
T ss_dssp SSSEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCCCCc-----h-hCChHHHHHHHh
Confidence 67899999963 2 555677888854
No 274
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.01 E-value=35 Score=22.22 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=17.7
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eme_A 10 EKPYVCDYCGK-----A-FGLSAELVRHQR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CCCeECCCCCh-----h-hCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 275
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=24.95 E-value=96 Score=25.64 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=29.4
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhcc----C-------cc-eeEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILY----A-------AV-RARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF----~-------P~-KVr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++.. .+.++|++.|+.| . ++ .++.. -..|++.|+|..-
T Consensus 6 ~l~V~nLp~~---------~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~----~~~g~afV~f~~~ 61 (172)
T 2g4b_A 6 RLYVGNIPFG---------ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN----QDKNFAFLEFRSV 61 (172)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE----TTTTEEEEEESSH
T ss_pred EEEEcCCCcc---------cCHHHHHHHHHHHhhhcccccCCCCceeeeEec----CCCCEEEEEeCCH
Confidence 3567888652 3578899999988 4 22 22322 2379999999763
No 276
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.91 E-value=62 Score=27.44 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=25.7
Q ss_pred cChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCC
Q 012025 352 MGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 352 ~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.++|++.|+.|..+....+ .. .+|++.|+|...
T Consensus 39 ~te~~L~~~F~~fG~v~~v~i--~~-~rgfaFV~f~~~ 73 (114)
T 2cq2_A 39 VSRNQLLPVLEKCGLVDALLM--PP-NKPYSFARYRTT 73 (114)
T ss_dssp CCHHHHHHHHHHHSCEEEEEC--CT-TCSCEEEEESSH
T ss_pred CCHHHHHHHHHhcCCeEEEEE--eC-CCCEEEEEECCH
Confidence 457889999999998753333 22 278999999864
No 277
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.91 E-value=35 Score=21.89 Aligned_cols=24 Identities=25% Similarity=0.677 Sum_probs=17.4
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (44)
T 2eof_A 10 EKPYECNECQK-----A-FNTKSNLMVHQR 33 (44)
T ss_dssp CCSEECTTTCC-----E-ESCHHHHHHHHH
T ss_pred CCCeECCCCCc-----c-cCCHhHHHHHHH
Confidence 67899999963 2 555778888843
No 278
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=24.84 E-value=28 Score=31.85 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=20.8
Q ss_pred hHHHHHHHHhcccCceeecCCCCeEEccCCC
Q 012025 228 RWFKKFFESLESLTVEEINEPARQWHCPACQ 258 (472)
Q Consensus 228 k~f~K~ye~Lk~g~~kvkn~~~~tf~CP~C~ 258 (472)
++|++..+.|+.|+.-.+.. ...|.|+.|+
T Consensus 133 ~~~~~~l~~l~~~~~~~~~~-~~~~~C~~CG 162 (191)
T 1lko_A 133 KRFLDFARNIKEGRVFLREQ-ATKWRCRNCG 162 (191)
T ss_dssp HHHHHHHHHHHHTCSSEEEE-EEEEEETTTC
T ss_pred HHHHHHHHhhhcccccccCC-CceEEECCCC
Confidence 66778888888887533322 3579999995
No 279
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=24.76 E-value=42 Score=30.43 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=21.7
Q ss_pred hHHHHHHHHhcccCceeecCCCCeEEccCCC
Q 012025 228 RWFKKFFESLESLTVEEINEPARQWHCPACQ 258 (472)
Q Consensus 228 k~f~K~ye~Lk~g~~kvkn~~~~tf~CP~C~ 258 (472)
.||++..+.|++|+.-. ....|.|+.|+
T Consensus 118 ~~~~~~l~~l~~~~~~~---~~~~~~C~~CG 145 (170)
T 3pwf_A 118 ELYRKAKEKAEKGEDIE---IKKVYICPICG 145 (170)
T ss_dssp HHHHHHHHHHTTTCCCC---CSCEEECTTTC
T ss_pred HHHHHHHHHHhcCCcCC---CCCeeEeCCCC
Confidence 68889999999987642 24688999996
No 280
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=24.69 E-value=36 Score=23.09 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=16.4
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhh
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
+..|.|+.|.. . |.....|..|-
T Consensus 30 ~~~~~C~~C~~-----~-f~~~~~l~~H~ 52 (57)
T 3uk3_C 30 EKPYKCEFCEY-----A-AAQKTSLRYHL 52 (57)
T ss_dssp CCCEECSSSSC-----E-ESSHHHHHHHH
T ss_pred CCCcCCCCCcc-----h-hCCHHHHHHHH
Confidence 56799999963 2 55567788874
No 281
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.65 E-value=34 Score=22.38 Aligned_cols=24 Identities=25% Similarity=0.631 Sum_probs=17.5
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|... |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~~ 33 (46)
T 2eq1_A 10 EKPYKCNECGKA------FRAHSNLTTHQV 33 (46)
T ss_dssp SCCCCCTTTTCC------CSSHHHHHHHHT
T ss_pred CCCeECCcCChh------hCCHHHHHHHHH
Confidence 678999999632 554678888854
No 282
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=24.63 E-value=36 Score=21.71 Aligned_cols=24 Identities=17% Similarity=0.627 Sum_probs=17.4
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 8 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 31 (42)
T 2el5_A 8 ENPYECSECGK-----A-FNRKDQLISHQR 31 (42)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CCCccCCCcCh-----h-hCCHHHHHHHHH
Confidence 67899999963 2 554677888854
No 283
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.56 E-value=36 Score=22.23 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=17.7
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ep3_A 10 EKPYRCAECGK-----A-FTDRSNLFTHQK 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCCCCc-----h-hCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 284
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=24.38 E-value=36 Score=21.59 Aligned_cols=24 Identities=17% Similarity=0.477 Sum_probs=17.3
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 9 ~~~~~C~~C~k-----~-f~~~~~l~~H~~ 32 (42)
T 2epc_A 9 ETPYLCGQCGK-----S-FTQRGSLAVHQR 32 (42)
T ss_dssp SCCEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCeECCCCCc-----c-cCCHHHHHHHhh
Confidence 67899999963 2 555677888843
No 285
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=24.27 E-value=18 Score=30.44 Aligned_cols=11 Identities=36% Similarity=1.081 Sum_probs=9.4
Q ss_pred CeEEccCCCCC
Q 012025 250 RQWHCPACQGG 260 (472)
Q Consensus 250 ~tf~CP~C~gk 260 (472)
.++|||.|++-
T Consensus 22 ~~LRCpvCqnq 32 (90)
T 2kw0_A 22 EELRCPKCQNN 32 (90)
T ss_dssp HSSBCSCTTSC
T ss_pred HcCcCCCCCCC
Confidence 57899999985
No 286
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=24.10 E-value=66 Score=27.25 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=30.2
Q ss_pred eEEEeecccccCCCCcccccChHH----HHHHhhccCcce-eEeccCCCCCcceEEEEeCCC
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQE----LLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~e----Lkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kd 389 (472)
.+.|-|++..- +..+ |.+.|+.|+++. |.... ....+|++.|+|..-
T Consensus 31 ~LfV~nL~~~~---------~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F~~~ 82 (127)
T 2a3j_A 31 VVLITNINPEV---------PKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVFATQ 82 (127)
T ss_dssp EEEEESCCTTS---------CHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEESSH
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEECCH
Confidence 46688886422 3344 446789999873 44332 234589999999873
No 287
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.06 E-value=31 Score=22.76 Aligned_cols=24 Identities=13% Similarity=0.419 Sum_probs=16.8
Q ss_pred CCCeEEccCCCCCCCCccccCCchHHhhhh
Q 012025 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
.+..|.|+.|+.. |.....|..|-
T Consensus 9 ~~k~~~C~~C~k~------f~~~~~L~~H~ 32 (46)
T 2ytm_A 9 GEKPYKCMECGKA------FGDNSSCTQHQ 32 (46)
T ss_dssp SCCSSSBTTTTBC------CSSHHHHHHHH
T ss_pred CCCCcCCCCCCch------hCCHHHHHHHH
Confidence 3678999999632 55466777774
No 288
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.96 E-value=35 Score=22.26 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=16.5
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhh
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
+..|.|+.|+. . |.....|..|-
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~ 32 (46)
T 2eor_A 10 EKPYNCEECGK-----A-FIHDSQLQEHQ 32 (46)
T ss_dssp CCSEECTTTCC-----E-ESSHHHHHHHH
T ss_pred CcCccCCCCCC-----C-cCCHHHHHHHH
Confidence 67899999963 2 55466777774
No 289
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.95 E-value=33 Score=22.05 Aligned_cols=24 Identities=21% Similarity=0.623 Sum_probs=17.4
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+.. |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~~ 33 (44)
T 2en7_A 10 MKPYVCNECGKA------FRSKSYLIIHTR 33 (44)
T ss_dssp SSSSCCTTTCCC------CSSHHHHHHHHT
T ss_pred CcCeECCCCCCc------cCCHHHHHHHhh
Confidence 678999999632 554677888854
No 290
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=23.89 E-value=29 Score=24.44 Aligned_cols=23 Identities=17% Similarity=0.538 Sum_probs=15.3
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhh
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
+.+|.|+.|+. . |.....|..|-
T Consensus 8 ~k~~~C~~C~k-----~-f~~~~~l~~H~ 30 (66)
T 2drp_A 8 EHTYRCKVCSR-----V-YTHISNFCRHY 30 (66)
T ss_dssp TTEEECTTTCC-----E-ESSHHHHHHHH
T ss_pred CcceECCCCcc-----h-hCCHHHHHHHH
Confidence 57788888853 2 55466777774
No 291
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.53 E-value=44 Score=21.78 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=16.8
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhh
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
+..|.|+.|+. . |.....|..|-
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~ 32 (46)
T 2yu8_A 10 EKPYKCNECGK-----V-FTQNSHLARHR 32 (46)
T ss_dssp CSSEECSSSCC-----E-ESSSHHHHHHT
T ss_pred CCCeECCcCCc-----h-hCCHHHHHHHH
Confidence 67899999963 2 55467788884
No 292
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=23.51 E-value=43 Score=21.94 Aligned_cols=24 Identities=21% Similarity=0.567 Sum_probs=17.0
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2emj_A 10 EKPFECAECGK-----S-FSISSQLATHQR 33 (46)
T ss_dssp CCSEECSSSSC-----E-ESSHHHHHHHHH
T ss_pred CCCEECCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554667777743
No 293
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.46 E-value=38 Score=22.23 Aligned_cols=24 Identities=21% Similarity=0.596 Sum_probs=17.3
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em6_A 10 EKCYKCDVCGK-----E-FSQSSHLQTHQR 33 (46)
T ss_dssp CCCCBCSSSCC-----B-CSSHHHHHHHHT
T ss_pred CCCeECCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554677888854
No 294
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.33 E-value=41 Score=21.88 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=17.2
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2emm_A 10 ERPHKCNECGK-----S-FIQSAHLIQHQR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCeeCCCCCh-----h-hCCHHHHHHHHH
Confidence 67899999963 2 554677777743
No 295
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.01 E-value=17 Score=20.72 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=14.0
Q ss_pred eEEccCCCCCCCCccccCCchHHhhhh
Q 012025 251 QWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
.|.|+.|+.. |.....|..|-
T Consensus 2 p~~C~~C~k~------f~~~~~l~~H~ 22 (26)
T 2lvu_A 2 PYVCERCGKR------FVQSSQLANHI 22 (26)
Confidence 5899999632 44355777774
No 296
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.27 E-value=41 Score=22.05 Aligned_cols=24 Identities=17% Similarity=0.548 Sum_probs=17.4
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|... |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~~ 33 (46)
T 2yth_A 10 EKPFQCEECGKR------FTQNSHLHSHQR 33 (46)
T ss_dssp SSSBCCSSSCCC------BSSHHHHHHHGG
T ss_pred CcCCCCCCCCcc------cCCHHHHHHHHH
Confidence 678999999632 554677888854
No 297
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.14 E-value=37 Score=22.08 Aligned_cols=24 Identities=17% Similarity=0.477 Sum_probs=17.5
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eop_A 10 EKPHECRECGK-----S-FSFNSQLIVHQR 33 (46)
T ss_dssp CCSCBCTTTCC-----B-CSSHHHHHHHHT
T ss_pred CCCeeCCCCCc-----h-hCCHHHHHHHHH
Confidence 67899999963 2 555678888854
No 298
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=23.08 E-value=37 Score=20.92 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=15.2
Q ss_pred eEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.|.|+.|+.. |.....|.+|-.
T Consensus 2 p~~C~~C~k~------F~~~~~L~~H~~ 23 (33)
T 1rim_A 2 KFACPECPKR------FMRSDHLSKHIT 23 (33)
T ss_dssp CCCCSSSCCC------CSSHHHHHHHHH
T ss_pred cccCCCCCch------hCCHHHHHHHHH
Confidence 5889999632 444677888844
No 299
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.07 E-value=40 Score=22.03 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=17.5
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2ytn_A 10 KKPYKCNECGK-----V-FTQNSHLARHRG 33 (46)
T ss_dssp CSSCBCTTTCC-----B-CSSHHHHHHHGG
T ss_pred CcCeECCCCCC-----e-eCCHHHHHHHhh
Confidence 67899999963 2 554677888854
No 300
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=23.05 E-value=37 Score=23.06 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=17.5
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|..|+. . |.....|..|-.
T Consensus 5 ~kp~~C~~C~k-----~-F~~~~~L~~H~~ 28 (48)
T 3iuf_A 5 DKPYACDICGK-----R-YKNRPGLSYHYA 28 (48)
T ss_dssp TSCEECTTTCC-----E-ESSHHHHHHHHH
T ss_pred CcCEECCCcCc-----c-cCCHHHHHHHhh
Confidence 57899999962 2 555678888854
No 301
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.70 E-value=18 Score=21.10 Aligned_cols=22 Identities=18% Similarity=0.578 Sum_probs=14.5
Q ss_pred eEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
.|.|+.|+.. |.....|..|-.
T Consensus 2 ~~~C~~C~k~------f~~~~~l~~H~~ 23 (29)
T 2lvt_A 2 PCQCVMCGKA------FTQASSLIAHVR 23 (29)
Confidence 5899999632 444557777743
No 302
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=22.92 E-value=44 Score=21.79 Aligned_cols=24 Identities=21% Similarity=0.638 Sum_probs=17.3
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+.. |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------F~~~~~L~~H~~ 33 (46)
T 2em0_A 10 EKTWKCRECDMC------FSQASSLRLHQN 33 (46)
T ss_dssp CCCCCCSSSCCC------CSSHHHHHHHGG
T ss_pred CcCeECCCCCcc------cCCHHHHHHHHH
Confidence 678999999632 554677888854
No 303
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.87 E-value=44 Score=21.74 Aligned_cols=24 Identities=17% Similarity=0.509 Sum_probs=17.7
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2en8_A 10 EKSHTCDECGK-----N-FCYISALRIHQR 33 (46)
T ss_dssp CSSEECTTTCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCCcCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 304
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=22.87 E-value=96 Score=28.46 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=32.5
Q ss_pred eEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCCc
Q 012025 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (472)
Q Consensus 333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kdw 390 (472)
.+.|-|++.. .+.++|++.|+.|+++.-..+- -..|++.|+|..--
T Consensus 24 ~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~---~~kg~afV~f~~~~ 69 (261)
T 3sde_A 24 RLFVGNLPTD---------ITEEDFKRLFERYGEPSEVFIN---RDRGFGFIRLESRT 69 (261)
T ss_dssp EEEEESCCTT---------CCHHHHHHHTGGGCCCSEEEEE---TTTTEEEEECSSHH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCEEEEEEe---CCCcEEEEEECCHH
Confidence 4668898742 3578899999999887433331 13689999998643
No 305
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.87 E-value=40 Score=22.02 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=17.3
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ytj_A 10 EKPYICAECGK-----A-FTIRSNLIKHQK 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CcCeECCCCCh-----h-hCCHHHHHHHHH
Confidence 67899999963 2 555677878843
No 306
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.84 E-value=44 Score=21.81 Aligned_cols=24 Identities=21% Similarity=0.566 Sum_probs=17.8
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ytg_A 10 EKPFKCGECGK-----S-YNQRVHLTQHQR 33 (46)
T ss_dssp CCSEECTTTCC-----E-ESSSHHHHTTGG
T ss_pred CCCeECCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 307
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.66 E-value=43 Score=21.83 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=17.1
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ytk_A 10 EKPYKCNECGK-----V-FTQNSHLTNHWR 33 (46)
T ss_dssp SCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCEeCCcCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554667777743
No 308
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.59 E-value=37 Score=21.57 Aligned_cols=24 Identities=21% Similarity=0.650 Sum_probs=17.1
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 8 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 31 (42)
T 2yte_A 8 EKPYSCAECKE-----T-FSDNNRLVQHQK 31 (42)
T ss_dssp CCSCBCTTTCC-----B-CSSHHHHHHHHH
T ss_pred CCCeECCCCCC-----c-cCCHHHHHHHHH
Confidence 57899999963 2 554677877844
No 309
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.49 E-value=43 Score=21.76 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=17.0
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|... |.....|..|-.
T Consensus 8 ~k~~~C~~C~k~------f~~~~~L~~H~~ 31 (43)
T 2yrm_A 8 NGAFFCNECDCR------FSEEASLKRHTL 31 (43)
T ss_dssp SCCBCCSSSCCC------BSSHHHHHHHHH
T ss_pred CCCEECCCCCCe------eCChHHHHHHHH
Confidence 578999999632 554667877743
No 310
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.33 E-value=42 Score=21.97 Aligned_cols=24 Identities=17% Similarity=0.524 Sum_probs=17.1
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2yto_A 10 EKPYKCSDCGK-----A-FTRKSGLHIHQQ 33 (46)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCEECcccCC-----c-cCCHhHHHHHHH
Confidence 67899999963 2 554667777743
No 311
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.29 E-value=44 Score=21.35 Aligned_cols=24 Identities=29% Similarity=0.717 Sum_probs=17.5
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 9 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 32 (42)
T 2eos_A 9 EKPYPCEICGT-----R-FRHLQTLKSHLR 32 (42)
T ss_dssp SCCBCCSSSCC-----C-BSSHHHHHHHTT
T ss_pred CCCEECCCCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555678888854
No 312
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.16 E-value=43 Score=21.85 Aligned_cols=24 Identities=17% Similarity=0.552 Sum_probs=17.7
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ep2_A 10 EKPYECSICGK-----S-FTKKSQLHVHQQ 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CcCcCCCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999953 2 555778888854
No 313
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.85 E-value=37 Score=22.20 Aligned_cols=24 Identities=17% Similarity=0.592 Sum_probs=17.3
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|... |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~~ 33 (46)
T 2eq2_A 10 GKPYQCNECGKA------FSQTSKLARHQR 33 (46)
T ss_dssp SCSSSCCSSCCC------CSSHHHHHHHGG
T ss_pred CCCeECCCCCcc------cCCHHHHHHHHH
Confidence 678999999632 554677888854
No 314
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.80 E-value=45 Score=21.74 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=17.3
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2yso_A 10 EKSHQCRECGE-----I-FFQYVSLIEHQV 33 (46)
T ss_dssp CCCEECTTTCC-----E-ESSHHHHHHHHH
T ss_pred CCCEEccccCh-----h-hCCHHHHHHHHH
Confidence 67899999963 2 554677888843
No 315
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.68 E-value=43 Score=21.84 Aligned_cols=23 Identities=22% Similarity=0.605 Sum_probs=16.8
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhh
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA 277 (472)
+..|.|+.|+. . |.....|..|-
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~ 32 (46)
T 2emh_A 10 ERPYICTVCGK-----A-FTDRSNLIKHQ 32 (46)
T ss_dssp CCSEECTTTCC-----E-ESSHHHHHHHH
T ss_pred CCCcCCCCCCc-----h-hCCHHHHHHHH
Confidence 67899999963 2 55567787774
No 316
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.67 E-value=35 Score=22.06 Aligned_cols=24 Identities=21% Similarity=0.614 Sum_probs=17.6
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (44)
T 2eox_A 10 SKSYNCNECGK-----A-FTRIFHLTRHQK 33 (44)
T ss_dssp CCCEEETTTTE-----E-ESSSHHHHTTHH
T ss_pred CCCeECcccCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555778888843
No 317
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.67 E-value=35 Score=22.39 Aligned_cols=24 Identities=21% Similarity=0.556 Sum_probs=17.0
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+.. |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~~ 33 (46)
T 2ytt_A 10 EKPYQCSECGKS------FSGSYRLTQHWI 33 (46)
T ss_dssp CCTTCCSSSCCC------CSSHHHHHHHHT
T ss_pred CCCeeCCCCCcc------cCCHHHHHHHHH
Confidence 678999999632 554677888843
No 318
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.64 E-value=47 Score=21.59 Aligned_cols=24 Identities=17% Similarity=0.473 Sum_probs=17.4
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2epw_A 10 EKPCKCTECGK-----A-FCWKSQLIMHQR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSSHHHHHHHH
T ss_pred CCCeeCCCCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554678888853
No 319
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.58 E-value=39 Score=22.01 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=17.2
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eov_A 10 EKPYKCSDCGK-----S-FTWKSRLRIHQK 33 (46)
T ss_dssp CCSCBCSSSCC-----B-CSSHHHHHHHHH
T ss_pred CCCccCCccCh-----h-hCCHHHHHHHHH
Confidence 67899999963 2 554677888843
No 320
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.45 E-value=43 Score=24.18 Aligned_cols=24 Identities=17% Similarity=0.522 Sum_probs=17.7
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|.+|-.
T Consensus 12 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 35 (72)
T 1x6e_A 12 EKPYGCVECGK-----A-FSRSSILVQHQR 35 (72)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCccCCCCCC-----c-cCCHHHHHHHHH
Confidence 68899999963 2 555777888854
No 321
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.42 E-value=46 Score=21.47 Aligned_cols=24 Identities=17% Similarity=0.602 Sum_probs=17.3
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 8 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 31 (44)
T 2emx_A 8 EKPFGCSCCEK-----A-FSSKSYLLVHQQ 31 (44)
T ss_dssp CCCEECSSSSC-----E-ESSHHHHHHHHH
T ss_pred CcCccCCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555677888843
No 322
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5
Probab=21.35 E-value=40 Score=29.45 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=25.0
Q ss_pred cCceeecCCCCeEEccCCCCCCCCccccCCchHHhhhhccc
Q 012025 240 LTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTK 280 (472)
Q Consensus 240 g~~kvkn~~~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~gv 280 (472)
|++.+--....+..|+||.. + |.....|++|....
T Consensus 4 ~~~~e~~~e~~~~~CLFCd~---~---~~s~~~~l~H~k~~ 38 (121)
T 1wir_A 4 GSSGEPAHGRQHTPCLFCDR---L---FASAEETFSHCKLE 38 (121)
T ss_dssp CCCCCCCCCCCCEECSSSCC---E---ESSHHHHHHHHHHS
T ss_pred CcccCccCCCCceeEecCCC---c---ccCHHHHHHHHHHh
Confidence 44443323467899999963 2 66799999999875
No 323
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.11 E-value=46 Score=21.62 Aligned_cols=24 Identities=17% Similarity=0.585 Sum_probs=17.3
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+.. |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~~ 33 (46)
T 2eq4_A 10 EKLYNCKECGKS------FSRAPCLLKHER 33 (46)
T ss_dssp CCCCCBTTTTBC------CSCHHHHHHHHH
T ss_pred CCCeECCCCCCc------cCchHHHHHHHH
Confidence 678999999632 554677888843
No 324
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.10 E-value=37 Score=22.15 Aligned_cols=24 Identities=25% Similarity=0.693 Sum_probs=17.6
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.-...|.+|..
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (45)
T 2epu_A 10 QKPFECTHCGK-----S-FRAKGNLVTHQR 33 (45)
T ss_dssp CCSEEETTTTE-----E-ESSHHHHHHHHT
T ss_pred CcCccCCCCCC-----c-cCChHHHHHHHH
Confidence 67899999953 2 554678888854
No 325
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.02 E-value=51 Score=21.47 Aligned_cols=24 Identities=17% Similarity=0.552 Sum_probs=17.0
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|.. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ytd_A 10 EKPYKCSECGK-----A-FHRHTHLNEHRR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CcCeECCCCCC-----e-eCChHHHHHHHH
Confidence 67899999963 2 554667777743
No 326
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae}
Probab=20.91 E-value=23 Score=35.29 Aligned_cols=13 Identities=15% Similarity=0.639 Sum_probs=8.3
Q ss_pred eeecCCCCeEEccC
Q 012025 243 EEINEPARQWHCPA 256 (472)
Q Consensus 243 kvkn~~~~tf~CP~ 256 (472)
||... ...|+|-+
T Consensus 250 KV~R~-knkWKc~l 262 (286)
T 1rm1_C 250 KVTRT-KARWKCSL 262 (286)
T ss_dssp EEEEE-TTEEEEEE
T ss_pred eeeec-ccceeEEe
Confidence 45555 66788865
No 327
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=20.86 E-value=45 Score=22.59 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=18.1
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhcc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAKT 279 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~g 279 (472)
+..|.|+.|.. . |.....|..|-..
T Consensus 27 ~~~~~C~~C~~-----~-f~~~~~l~~H~~~ 51 (57)
T 1bbo_A 27 VRPYHCTYCNF-----S-FKTKGNLTKHMKS 51 (57)
T ss_dssp CCCEECSSSSC-----E-ESSHHHHHHHHHS
T ss_pred CCCccCCCCCc-----h-hcCHHHHHHHHHH
Confidence 57899999963 2 5557788888543
No 328
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.44 E-value=45 Score=21.69 Aligned_cols=24 Identities=17% Similarity=0.544 Sum_probs=17.3
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+.. |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~~ 33 (46)
T 2ep1_A 10 EKPYECSDCGKS------FIKKSQLHVHQR 33 (46)
T ss_dssp CCSSCCSSSCCC------CSSHHHHHHHHG
T ss_pred CCCcCCCCCCch------hCCHHHHHHHHH
Confidence 678999999632 554677888854
No 329
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.40 E-value=46 Score=21.70 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=17.2
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+.. |.....|..|-.
T Consensus 10 ~~~~~C~~C~k~------f~~~~~L~~H~~ 33 (46)
T 2eoq_A 10 EKPFKCDICGKS------FCGRSRLNRHSM 33 (46)
T ss_dssp SCSCCCSSSCCC------CSSHHHHHHHHH
T ss_pred CCCcCCCcCCch------hCCHHHHHHHHH
Confidence 678999999632 554677888843
No 330
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.28 E-value=37 Score=22.17 Aligned_cols=24 Identities=17% Similarity=0.505 Sum_probs=17.3
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2en6_A 10 EKPYGCNECGK-----T-FSQKSILSAHQR 33 (46)
T ss_dssp SCCEEETTTTE-----E-ESSHHHHHHHHH
T ss_pred CcCeECCCCCc-----c-cCchHHHHHHHH
Confidence 67899999953 2 555677888843
No 331
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.15 E-value=49 Score=21.55 Aligned_cols=24 Identities=21% Similarity=0.606 Sum_probs=17.5
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eml_A 10 EKPYECSVCGK-----A-FSHRQSLSVHQR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CCCeeCCCcCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555677888854
No 332
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.15 E-value=49 Score=21.56 Aligned_cols=24 Identities=17% Similarity=0.563 Sum_probs=17.3
Q ss_pred CCeEEccCCCCCCCCccccCCchHHhhhhc
Q 012025 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (472)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~~lk~LLqHA~ 278 (472)
+..|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2emy_A 10 ENPYECHECGK-----A-FSRKYQLISHQR 33 (46)
T ss_dssp SCCEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CcCcCCCCCCc-----c-cCcHHHHHHHHH
Confidence 67899999963 2 554677888843
No 333
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=20.13 E-value=1.4e+02 Score=29.83 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=29.2
Q ss_pred cccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCCchh
Q 012025 350 TGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGG 392 (472)
Q Consensus 350 ~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kdwsG 392 (472)
.+.+.++|++.|+.|..++-..+ .. ..|++.|+|...-..
T Consensus 30 ~~~te~~L~~~F~~~G~V~~v~~--~~-~kgfaFV~f~~~~~A 69 (345)
T 3tht_A 30 NGVSRNQLLPVLEKCGLVDALLM--PP-NKPYSFARYRTTEES 69 (345)
T ss_dssp GTCCHHHHHHHHHTTSCEEEEEC--CT-TCSEEEEEESSHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEEE--eC-CCCEEEEEECCHHHH
Confidence 34678899999999988753222 22 479999999886544
Done!