BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012027
         (472 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 83/217 (38%), Gaps = 50/217 (23%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPXXXXXXXXXXXXXXXGCFKFE 63
           L  L L +  ++ +P SI  L+ L +L+++ C  L  LP                     
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG----------- 177

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSS---ASCYLPFP 120
              E  G V +L+ L +  T IR  P+SI  ++NLK+L  R  N P S+   A  +LP  
Sbjct: 178 ---EHQGLV-NLQSLRLEWTGIRSLPASIANLQNLKSLKIR--NSPLSALGPAIHHLPKL 231

Query: 121 INLMRRSSDXXXXXXXXXXXXXXXXXXXXXDCGLGEGAIPSDIGNLHSLKTLYLSK-NNF 179
             L  R                                 P   G    LK L L   +N 
Sbjct: 232 EELDLRGCTALRN-------------------------YPPIFGGRAPLKRLILKDCSNL 266

Query: 180 VTLPASINCLFNLEKLKLEDCKRLQSLP----QLPPN 212
           +TLP  I+ L  LEKL L  C  L  LP    QLP N
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303



 Score = 35.4 bits (80), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 152 CGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ 208
            GL E  +P        L+TL L++N    LPASI  L  L +L +  C  L  LP+
Sbjct: 114 AGLXE--LPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPE 168



 Score = 34.7 bits (78), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 40/165 (24%)

Query: 62  FENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPI 121
              L +T  Q   LE L ++   +R  P+SI  +  L+ LS R C          LP P+
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC-----PELTELPEPL 170

Query: 122 NLMRRSSDXXXXXXXXXXXXXXXXXXXXXDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVT 181
                S+D                       G  +G +        +L++L L      +
Sbjct: 171 A----STDA---------------------SGEHQGLV--------NLQSLRLEWTGIRS 197

Query: 182 LPASINCLFNLEKLKLEDCKRLQSLPQLP--PNVEKVRVNGCASL 224
           LPASI  L NL+ LK+ +       P +   P +E++ + GC +L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242


>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
          Length = 727

 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 159 IPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLP 207
           I ++I     L  LYL+ N+   LPA I  L NL  L L    RL SLP
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLP 286


>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors A29
          Length = 270

 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 166 LHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCKRLQSLP 207
           L  L+ LYL+ N   TLPA I   L NLE L + D K LQ+LP
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALP 101


>pdb|3UA0|A Chain A, N-Terminal Domain Of Bombyx Mori Fibroin Mediates The
           Assembly Of Silk In Response To Ph Decrease
 pdb|3UA0|B Chain B, N-Terminal Domain Of Bombyx Mori Fibroin Mediates The
           Assembly Of Silk In Response To Ph Decrease
          Length = 134

 Score = 30.0 bits (66), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 424 QWTRFTSYNLNEFHHDFVGSNMAVAKAN 451
           Q+  +T+ N+N+F  D+ GS++ V  +N
Sbjct: 22  QYVAYTNANINDFDEDYFGSDVTVQSSN 49


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,556,026
Number of Sequences: 62578
Number of extensions: 537611
Number of successful extensions: 1035
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1016
Number of HSP's gapped (non-prelim): 21
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)