Query 012027
Match_columns 472
No_of_seqs 408 out of 3432
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:51:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 5.9E-36 1.3E-40 339.2 32.2 381 2-415 611-1099(1153)
2 PLN00113 leucine-rich repeat r 99.8 2.6E-19 5.6E-24 202.3 13.4 220 1-221 139-366 (968)
3 PLN00113 leucine-rich repeat r 99.8 2.7E-18 6E-23 194.0 14.0 205 1-206 163-372 (968)
4 PLN03210 Resistant to P. syrin 99.7 5.5E-17 1.2E-21 184.9 19.0 207 3-216 590-851 (1153)
5 KOG0444 Cytoskeletal regulator 99.7 3.8E-19 8.2E-24 177.8 -3.5 225 2-230 126-381 (1255)
6 KOG0617 Ras suppressor protein 99.7 1E-18 2.2E-23 149.1 -6.2 179 15-224 24-203 (264)
7 KOG0444 Cytoskeletal regulator 99.6 2.9E-17 6.2E-22 164.5 -3.2 180 2-207 197-379 (1255)
8 KOG0472 Leucine-rich repeat pr 99.6 1.2E-17 2.6E-22 159.6 -6.8 192 3-201 115-308 (565)
9 KOG0617 Ras suppressor protein 99.6 1.5E-17 3.2E-22 142.0 -6.5 161 1-188 32-194 (264)
10 KOG0472 Leucine-rich repeat pr 99.5 2.2E-17 4.8E-22 157.9 -10.3 104 2-107 68-171 (565)
11 PRK15370 E3 ubiquitin-protein 99.5 3.6E-14 7.8E-19 152.7 11.3 205 3-229 200-405 (754)
12 PRK15370 E3 ubiquitin-protein 99.5 1.8E-13 3.9E-18 147.4 12.8 204 2-228 178-383 (754)
13 PRK15387 E3 ubiquitin-protein 99.5 7E-13 1.5E-17 142.2 15.8 196 3-228 223-418 (788)
14 KOG4194 Membrane glycoprotein 99.5 7.9E-15 1.7E-19 146.4 -0.2 196 3-200 126-351 (873)
15 KOG4194 Membrane glycoprotein 99.4 1E-14 2.3E-19 145.5 -1.1 198 2-201 197-427 (873)
16 KOG0618 Serine/threonine phosp 99.4 1.3E-14 2.7E-19 151.9 -3.6 215 3-223 220-488 (1081)
17 PRK15387 E3 ubiquitin-protein 99.4 2.2E-12 4.8E-17 138.4 11.9 199 1-229 241-439 (788)
18 cd00116 LRR_RI Leucine-rich re 99.2 2.4E-12 5.3E-17 126.8 1.4 201 2-221 23-260 (319)
19 KOG0532 Leucine-rich repeat (L 99.2 1.2E-12 2.6E-17 130.8 -3.6 168 4-200 100-270 (722)
20 COG4886 Leucine-rich repeat (L 99.2 2.4E-11 5.2E-16 123.7 5.4 176 3-206 117-293 (394)
21 cd00116 LRR_RI Leucine-rich re 99.1 6.9E-12 1.5E-16 123.6 -0.1 201 2-221 51-288 (319)
22 KOG0618 Serine/threonine phosp 99.1 8.9E-13 1.9E-17 138.3 -6.7 194 2-204 241-490 (1081)
23 KOG4658 Apoptotic ATPase [Sign 99.0 6.8E-11 1.5E-15 129.5 2.9 225 2-229 545-788 (889)
24 KOG0532 Leucine-rich repeat (L 99.0 6.9E-12 1.5E-16 125.4 -5.5 185 7-222 80-271 (722)
25 KOG4237 Extracellular matrix p 99.0 1.5E-11 3.3E-16 118.1 -4.4 200 4-204 69-336 (498)
26 KOG3207 Beta-tubulin folding c 98.9 5.9E-10 1.3E-14 108.6 2.0 106 2-107 121-233 (505)
27 COG4886 Leucine-rich repeat (L 98.9 9.2E-10 2E-14 112.0 3.0 160 3-190 141-300 (394)
28 KOG4658 Apoptotic ATPase [Sign 98.8 1.8E-09 3.9E-14 118.5 4.2 150 3-176 524-677 (889)
29 PF14580 LRR_9: Leucine-rich r 98.8 3E-09 6.5E-14 94.5 2.8 89 14-107 9-99 (175)
30 PRK15386 type III secretion pr 98.8 3.7E-08 8E-13 97.9 10.6 73 21-105 48-121 (426)
31 PLN03150 hypothetical protein; 98.7 2.6E-08 5.6E-13 106.8 7.8 104 4-107 420-526 (623)
32 KOG1259 Nischarin, modulator o 98.7 1.5E-09 3.2E-14 101.1 -1.5 54 3-58 285-338 (490)
33 KOG3207 Beta-tubulin folding c 98.7 1.7E-09 3.6E-14 105.5 -1.4 181 21-202 117-313 (505)
34 KOG4237 Extracellular matrix p 98.7 2E-09 4.3E-14 103.7 -2.1 94 10-106 54-150 (498)
35 PF14580 LRR_9: Leucine-rich r 98.6 3E-08 6.6E-13 88.1 4.4 101 3-107 20-124 (175)
36 KOG2120 SCF ubiquitin ligase, 98.6 5.9E-10 1.3E-14 103.7 -7.0 105 3-107 186-297 (419)
37 PRK15386 type III secretion pr 98.6 3.5E-07 7.5E-12 91.1 10.9 61 2-67 52-112 (426)
38 PLN03150 hypothetical protein; 98.6 1.2E-07 2.5E-12 101.8 8.2 69 138-207 438-507 (623)
39 KOG1259 Nischarin, modulator o 98.6 1.3E-08 2.8E-13 94.9 0.2 103 72-201 283-385 (490)
40 KOG1909 Ran GTPase-activating 98.4 1.7E-08 3.6E-13 96.2 -3.1 181 2-202 92-310 (382)
41 KOG0531 Protein phosphatase 1, 98.4 4.4E-08 9.5E-13 100.3 -1.1 32 169-200 234-265 (414)
42 PF13855 LRR_8: Leucine rich r 98.3 7.3E-07 1.6E-11 64.9 4.3 58 2-60 1-60 (61)
43 PF13855 LRR_8: Leucine rich r 98.1 3.3E-06 7.1E-11 61.4 3.5 59 25-84 1-60 (61)
44 KOG1909 Ran GTPase-activating 98.0 3.5E-07 7.6E-12 87.3 -2.9 38 163-200 209-251 (382)
45 PF12799 LRR_4: Leucine Rich r 98.0 8.3E-06 1.8E-10 54.9 3.5 41 2-43 1-41 (44)
46 KOG0531 Protein phosphatase 1, 97.9 8.9E-07 1.9E-11 90.7 -2.5 129 24-181 71-200 (414)
47 PF12799 LRR_4: Leucine Rich r 97.8 1.6E-05 3.5E-10 53.5 2.8 33 168-200 2-34 (44)
48 KOG2120 SCF ubiquitin ligase, 97.8 8.2E-07 1.8E-11 83.1 -4.9 108 2-109 210-326 (419)
49 KOG1859 Leucine-rich repeat pr 97.8 3.5E-07 7.5E-12 94.7 -8.5 42 138-179 250-291 (1096)
50 KOG2982 Uncharacterized conser 97.7 1.1E-05 2.3E-10 75.8 1.2 88 141-230 198-287 (418)
51 KOG1859 Leucine-rich repeat pr 97.5 3E-06 6.4E-11 88.0 -6.9 99 75-200 166-264 (1096)
52 KOG3665 ZYG-1-like serine/thre 97.4 3.9E-05 8.5E-10 82.7 0.3 155 24-200 121-285 (699)
53 KOG4579 Leucine-rich repeat (L 97.3 1.5E-05 3.2E-10 66.6 -3.8 103 4-108 29-135 (177)
54 KOG1644 U2-associated snRNP A' 97.1 0.00073 1.6E-08 60.3 5.1 100 5-107 22-124 (233)
55 KOG4579 Leucine-rich repeat (L 97.1 5.5E-05 1.2E-09 63.2 -1.9 87 3-91 54-141 (177)
56 KOG4341 F-box protein containi 97.0 9.4E-06 2E-10 79.4 -8.1 105 4-108 140-254 (483)
57 KOG3665 ZYG-1-like serine/thre 97.0 0.00041 9E-09 74.9 2.9 103 1-106 147-260 (699)
58 KOG4341 F-box protein containi 96.9 5.5E-05 1.2E-09 74.2 -4.5 226 1-226 163-416 (483)
59 COG5238 RNA1 Ran GTPase-activa 96.6 0.00099 2.1E-08 62.1 1.9 190 21-221 26-252 (388)
60 KOG1644 U2-associated snRNP A' 96.4 0.0056 1.2E-07 54.8 5.2 102 3-107 43-151 (233)
61 KOG1947 Leucine rich repeat pr 96.3 0.00051 1.1E-08 71.4 -2.2 107 2-108 188-307 (482)
62 KOG2739 Leucine-rich acidic nu 96.0 0.0039 8.5E-08 57.9 2.3 64 138-203 61-129 (260)
63 PF00560 LRR_1: Leucine Rich R 96.0 0.0034 7.4E-08 35.2 1.2 21 3-23 1-21 (22)
64 COG5238 RNA1 Ran GTPase-activa 95.8 0.0014 3E-08 61.1 -1.5 182 1-201 29-253 (388)
65 PF00560 LRR_1: Leucine Rich R 95.7 0.0044 9.5E-08 34.8 0.8 21 168-188 1-21 (22)
66 KOG2739 Leucine-rich acidic nu 95.6 0.0061 1.3E-07 56.7 2.0 84 22-108 40-128 (260)
67 KOG2982 Uncharacterized conser 95.5 0.0059 1.3E-07 57.8 1.5 175 3-180 72-262 (418)
68 KOG1947 Leucine rich repeat pr 95.4 0.00056 1.2E-08 71.1 -6.7 131 48-199 187-330 (482)
69 KOG2123 Uncharacterized conser 94.1 0.0035 7.5E-08 58.8 -4.0 79 3-85 20-100 (388)
70 PF13504 LRR_7: Leucine rich r 94.1 0.034 7.3E-07 29.0 1.4 16 168-183 2-17 (17)
71 KOG2123 Uncharacterized conser 93.9 0.0053 1.2E-07 57.6 -3.2 77 1-79 40-123 (388)
72 PF13504 LRR_7: Leucine rich r 93.3 0.051 1.1E-06 28.3 1.3 16 3-18 2-17 (17)
73 PF13306 LRR_5: Leucine rich r 90.9 0.91 2E-05 37.6 6.9 56 45-103 8-65 (129)
74 smart00369 LRR_TYP Leucine-ric 89.9 0.26 5.6E-06 28.6 1.9 21 166-186 1-21 (26)
75 smart00370 LRR Leucine-rich re 89.9 0.26 5.6E-06 28.6 1.9 21 166-186 1-21 (26)
76 PF13306 LRR_5: Leucine rich r 89.8 0.99 2.2E-05 37.4 6.3 96 3-105 13-112 (129)
77 smart00370 LRR Leucine-rich re 88.9 0.27 5.8E-06 28.5 1.5 20 1-20 1-20 (26)
78 smart00369 LRR_TYP Leucine-ric 88.9 0.27 5.8E-06 28.5 1.5 20 1-20 1-20 (26)
79 KOG0473 Leucine-rich repeat pr 82.6 0.027 5.8E-07 51.6 -7.4 92 14-107 30-122 (326)
80 KOG3864 Uncharacterized conser 81.3 0.35 7.6E-06 43.6 -0.8 60 46-105 122-185 (221)
81 smart00364 LRR_BAC Leucine-ric 77.2 1.7 3.6E-05 25.4 1.4 18 167-184 2-19 (26)
82 KOG4308 LRR-containing protein 76.4 0.014 3E-07 60.5 -13.0 180 4-201 89-301 (478)
83 KOG0473 Leucine-rich repeat pr 74.9 0.099 2.1E-06 48.0 -6.2 82 3-86 43-124 (326)
84 KOG3864 Uncharacterized conser 69.7 0.69 1.5E-05 41.8 -2.1 60 50-109 102-164 (221)
85 smart00365 LRR_SD22 Leucine-ri 65.4 4.9 0.00011 23.5 1.6 17 1-17 1-17 (26)
86 smart00367 LRR_CC Leucine-rich 62.8 5.5 0.00012 22.9 1.5 14 190-203 2-15 (26)
87 PF13516 LRR_6: Leucine Rich r 60.3 4.8 0.0001 22.6 1.0 14 167-180 2-15 (24)
88 KOG4308 LRR-containing protein 60.1 0.06 1.3E-06 55.9 -12.4 161 2-180 115-303 (478)
89 smart00368 LRR_RI Leucine rich 47.8 16 0.00034 21.5 1.8 14 167-180 2-15 (28)
90 KOG3763 mRNA export factor TAP 30.0 24 0.00053 36.9 1.0 63 23-86 216-283 (585)
91 PF08557 Lipid_DES: Sphingolip 28.7 15 0.00032 23.7 -0.5 13 459-471 10-22 (39)
92 PF07725 LRR_3: Leucine Rich R 20.5 58 0.0013 17.7 0.9 17 3-19 1-17 (20)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.9e-36 Score=339.16 Aligned_cols=381 Identities=22% Similarity=0.328 Sum_probs=265.4
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
.+|++|+|.++.+..+|..+..+++|+.|+|++|..++.+|. ++.+++|++|+|++|..+..+|..++++++|+.|+++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 578899999999999998899999999999999988999986 8889999999999999999999999999999999999
Q ss_pred Cc-cCCCCCccccCCCCCcEEEecCCCCCCCCCCC---------------CCCc------chh-----------------
Q 012027 82 GT-AIRCPPSSIFLMKNLKTLSFRGCNGPPSSASC---------------YLPF------PIN----------------- 122 (472)
Q Consensus 82 ~~-~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~---------------~~~~------~~~----------------- 122 (472)
+| .+..+|..+ ++++|+.|++++|..+...+.. .++. ...
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccc
Confidence 86 677888876 7899999999998644322110 0000 000
Q ss_pred --------------hhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCC--------------------CCCC
Q 012027 123 --------------LMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDI--------------------GNLH 167 (472)
Q Consensus 123 --------------l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l--------------------~~l~ 167 (472)
+....+. ....+|. +.++++|+.|++++|... +.+|..+ ...+
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~-~l~~lP~si~~L~~L~~L~Ls~C~~L-~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~ 846 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIP-SLVELPSSIQNLHKLEHLEIENCINL-ETLPTGINLESLESLDLSGCSRLRTFPDIST 846 (1153)
T ss_pred cchhhhhccccchheeCCCCC-CccccChhhhCCCCCCEEECCCCCCc-CeeCCCCCccccCEEECCCCCcccccccccc
Confidence 0000000 1112343 677788888888887533 2355432 1124
Q ss_pred CCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCC---CCccEEEEccCCCcccccccccccc---------
Q 012027 168 SLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLP---PNVEKVRVNGCASLVTLLGALKLRK--------- 235 (472)
Q Consensus 168 ~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp---~~L~~L~~~~c~sL~~~~~~~~~~~--------- 235 (472)
+|+.|+|++|.++.+|.++..+++|+.|++++|++++.+|..+ ++|+.+++.+|.+|+.++.......
T Consensus 847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~ 926 (1153)
T PLN03210 847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIH 926 (1153)
T ss_pred ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhccccc
Confidence 5667777777788899999999999999999999999998754 4667889999999987654211000
Q ss_pred --c-ccceeeecccccccCccchHHHHHHHHHhhccCCCCceEEEecCCCCCcccccCCCCcEEE-EEcCCCCCCCCcee
Q 012027 236 --S-SCTIIDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSIT-VTRPSYLCNMNQVV 311 (472)
Q Consensus 236 --~-~~~~~~f~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~q~~g~si~-~~lp~~~~~~~~~~ 311 (472)
. ......|.+|++++....+ +. ......+++||.++|+||+||+.|++++ |++|+.|+ ...|.
T Consensus 927 ~~~p~~~~l~f~nC~~L~~~a~l---------~~---~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~~~ 993 (1153)
T PLN03210 927 SKLPSTVCINFINCFNLDQEALL---------QQ---QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISP-CQPFF 993 (1153)
T ss_pred ccCCchhccccccccCCCchhhh---------cc---cccceEEECCCccCchhccCCcccceeeeeccCCccc-CCCcc
Confidence 0 0012358899988643221 11 1123467899999999999999999998 99999998 78899
Q ss_pred EEEEEEEEecCCC-------CCceeeEeecCCCCceeeeeccccCCCCCCCeEEEEEeeCcccc----------ccc-cC
Q 012027 312 GYAACRVFHVPKH-------STGIRRFYRYPHPAHVLHCSMDEKFGHRGSDHLWLLYLPRQSYY----------CNV-KW 373 (472)
Q Consensus 312 gfa~c~v~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdHl~l~y~~~~~~~----------~~~-~~ 373 (472)
||++|+|+.+... .+.+.|.+....+..+ + ....+|+|+.|....++. +.. .+
T Consensus 994 ~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1064 (1153)
T PLN03210 994 RFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHF-D--------SPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLA 1064 (1153)
T ss_pred ceEEEEEEecCccccCCCceeEEEEEEEECCCCCcc-c--------cCCCceeEeeeccccceEEecccccccccccchh
Confidence 9999999976541 2355677766555443 1 224455555554332111 000 11
Q ss_pred CcccceEEEEEeecccccCCCCCCCccEEEEccceeeecccc
Q 012027 374 HFESNHFRLSFMDEREKHCPAGSGTGLKVKRCGFHPGYMHEV 415 (472)
Q Consensus 374 ~~~~~~i~~~f~~~~~~~~~~~~~~~~~Vk~CGv~liy~~d~ 415 (472)
+..++|+++.|..... ...++||+||||++|+++.
T Consensus 1065 ~~~~~~~~~~f~~~~~-------~~~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210 1065 ELNYDHVDIQFRLTNK-------NSQLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred ccCCceeeEEEEEecC-------CCCeEEEeeeEEEeccCCC
Confidence 2357788888876521 2347999999999997654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=2.6e-19 Score=202.34 Aligned_cols=220 Identities=26% Similarity=0.290 Sum_probs=140.9
Q ss_pred CCCccEEEeeCCCCe-eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027 1 MECLRELLLDKTDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD 79 (472)
Q Consensus 1 l~~L~~L~L~~~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (472)
+++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..++++++|++|++++|...+.+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 356677777777665 5677788888888888888776667787788888888888888777777788888888888888
Q ss_pred eeCccCC-CCCccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027 80 ISGTAIR-CPPSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE 156 (472)
Q Consensus 80 L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~ 156 (472)
+++|.+. .+|..++++++|+.|++++|......+ ...+.....+....+.+.+.....+..+++|+.|++++|.+.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~- 297 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS- 297 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-
Confidence 8888776 677778888888888888776432222 222222333333344443333333566666666666666664
Q ss_pred CCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccC
Q 012027 157 GAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGC 221 (472)
Q Consensus 157 ~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c 221 (472)
+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.....+|.. .++|+.|++++|
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 446666666666666666666665 45555666666666666666544444421 134455554443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=2.7e-18 Score=194.01 Aligned_cols=205 Identities=24% Similarity=0.242 Sum_probs=149.4
Q ss_pred CCCccEEEeeCCCCe-eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027 1 MECLRELLLDKTDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD 79 (472)
Q Consensus 1 l~~L~~L~L~~~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (472)
+++|++|+|++|.+. .+|..++++++|++|+|++|.....+|..++++++|++|++++|.....+|..++++++|++|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 578999999999886 7788899999999999999987778898899999999999999888778899999999999999
Q ss_pred eeCccCC-CCCccccCCCCCcEEEecCCCCCCCCCC--CCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027 80 ISGTAIR-CPPSSIFLMKNLKTLSFRGCNGPPSSAS--CYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE 156 (472)
Q Consensus 80 L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~ 156 (472)
+++|.+. .+|..++++++|+.|++++|......+. ..+.....+....+.+.+.....+..+++|+.|++++|.+.
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~- 321 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT- 321 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC-
Confidence 9999887 6788889999999999988864333221 12222233333344443322223566677777777777665
Q ss_pred CCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccC
Q 012027 157 GAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSL 206 (472)
Q Consensus 157 ~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~l 206 (472)
+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|+....+
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 456666667777777777777665 56666666666666666666544333
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=5.5e-17 Score=184.87 Aligned_cols=207 Identities=31% Similarity=0.427 Sum_probs=147.5
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
+|+.|.+.++.++.+|..+ .+.+|+.|+|.+|+ +..+|.++..+++|++|+|++|..+..+|. +..+++|++|++++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 5788888888888888877 57899999999976 888999999999999999999988888886 78899999999999
Q ss_pred c-cCCCCCccccCCCCCcEEEecCCCCCCCCCCCC-CCcchhhhcc---------------------cCCCCcCCCCCCC
Q 012027 83 T-AIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCY-LPFPINLMRR---------------------SSDLGALMLPSLS 139 (472)
Q Consensus 83 ~-~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~l~~~---------------------~~~~~~~~l~~l~ 139 (472)
| .+.++|.+++++++|+.|++++|..+...+... +..+..+... .+.+ ..+|...
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i--~~lP~~~ 744 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAI--EEFPSNL 744 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcc--ccccccc
Confidence 7 567999999999999999999998766655432 1111111111 1110 0111100
Q ss_pred -------------------------------CCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCC-CCccCCcccC
Q 012027 140 -------------------------------GLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKN-NFVTLPASIN 187 (472)
Q Consensus 140 -------------------------------~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n-~~~~lp~~i~ 187 (472)
..++|+.|++++|... ..+|..++.+++|+.|+|++| ++..+|..+
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l-~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL-VELPSSIQNLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc-cccChhhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence 1235666666666543 347777777777777777776 466777665
Q ss_pred CCCCcceeeccCccccccCCCCCCCccEE
Q 012027 188 CLFNLEKLKLEDCKRLQSLPQLPPNVEKV 216 (472)
Q Consensus 188 ~l~~L~~L~l~~c~~L~~lp~lp~~L~~L 216 (472)
.+++|+.|++++|..++.+|..+.+++.|
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L 851 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPDISTNISDL 851 (1153)
T ss_pred CccccCEEECCCCCccccccccccccCEe
Confidence 57777777777777777666544433333
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.71 E-value=3.8e-19 Score=177.85 Aligned_cols=225 Identities=26% Similarity=0.351 Sum_probs=150.0
Q ss_pred CCccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCc------------------
Q 012027 2 ECLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF------------------ 62 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l------------------ 62 (472)
+++-+|+|++|+|..||.+ +.+|+.|-+|+|++|+ +..+|+.+.+|..|++|.|++|...
T Consensus 126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred cCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 4566788888888888876 4678888888888865 8888888888888888888887432
Q ss_pred -------hhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCC-CCCCCcchhhhcccCCCCcCC
Q 012027 63 -------ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA-SCYLPFPINLMRRSSDLGALM 134 (472)
Q Consensus 63 -------~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 134 (472)
..+|.++..|.+|..++++.|.+..+|.-+.++.+|+.|+|++|....... ...+.....+-.+.+.++ .
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt--~ 282 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT--V 282 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc--c
Confidence 235666777777777777777777778777888888888888876332110 011111112222233222 3
Q ss_pred CCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC---CC
Q 012027 135 LPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ---LP 210 (472)
Q Consensus 135 l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~---lp 210 (472)
+|+ +..++.|+.|.+.+|.+.-+.+|+.||.+..|+.+..++|++.-+|.++..|.+|+.|.|++|. |-.+|+ +.
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL 361 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLL 361 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhc
Confidence 455 6666777777777776655567777777777777777777777777777777777777776543 445664 34
Q ss_pred CCccEEEEccCCCccccccc
Q 012027 211 PNVEKVRVNGCASLVTLLGA 230 (472)
Q Consensus 211 ~~L~~L~~~~c~sL~~~~~~ 230 (472)
+.|+.|++++.++|..-|.+
T Consensus 362 ~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 362 PDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred CCcceeeccCCcCccCCCCc
Confidence 56677777777777655543
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1e-18 Score=149.11 Aligned_cols=179 Identities=28% Similarity=0.432 Sum_probs=132.1
Q ss_pred eeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccccC
Q 012027 15 KEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFL 94 (472)
Q Consensus 15 ~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~ 94 (472)
.++|. +-++.+...|.|+.|+ +..+|+.|..|++|++|++++| .++.+|..+..|+.|+.|+++-|.+..+|..++.
T Consensus 24 ~~~~g-Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPG-LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred hhccc-ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 34443 5556677777777765 6777777777888888888774 4677787788888888888877777777888888
Q ss_pred CCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEE
Q 012027 95 MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLY 173 (472)
Q Consensus 95 l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~ 173 (472)
++-|+.|+|..+.... ..+|. +..+..|+.|.|++|.+ +.+|.+++.+++|+.|.
T Consensus 101 ~p~levldltynnl~e----------------------~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNE----------------------NSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILS 156 (264)
T ss_pred Cchhhhhhcccccccc----------------------ccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEe
Confidence 8888888877665222 12343 55667777888888877 45889999999999999
Q ss_pred cCCCCCccCCcccCCCCCcceeeccCccccccCCCCCCCccEEEEccCCCc
Q 012027 174 LSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASL 224 (472)
Q Consensus 174 Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c~sL 224 (472)
+..|++-++|..++.+++|+.|.+.++. |+ -+||.|-.|++.+-++.
T Consensus 157 lrdndll~lpkeig~lt~lrelhiqgnr-l~---vlppel~~l~l~~~k~v 203 (264)
T KOG0617|consen 157 LRDNDLLSLPKEIGDLTRLRELHIQGNR-LT---VLPPELANLDLVGNKQV 203 (264)
T ss_pred eccCchhhCcHHHHHHHHHHHHhcccce-ee---ecChhhhhhhhhhhHHH
Confidence 9999999999999999999999999875 33 34666666666554443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.61 E-value=2.9e-17 Score=164.54 Aligned_cols=180 Identities=27% Similarity=0.395 Sum_probs=123.1
Q ss_pred CCccEEEeeCCC--CeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027 2 ECLRELLLDKTD--IKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD 79 (472)
Q Consensus 2 ~~L~~L~L~~~~--l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (472)
.+|++|.+++++ +..+|.++..|.+|+.++|+.|. +..+|..+.++.+|+.|+||+| .+..+.-..+...+|++|+
T Consensus 197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLN 274 (1255)
T ss_pred hhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhc
Confidence 344445555443 22455555555555555555432 5555555555555555555553 2333444444455555555
Q ss_pred eeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCC
Q 012027 80 ISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGA 158 (472)
Q Consensus 80 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~ 158 (472)
|+.|.++.+|+.+.+|++|+.|.+.+| .++...+|+ ++.+..|+.+..++|++ +.
T Consensus 275 lSrNQLt~LP~avcKL~kL~kLy~n~N----------------------kL~FeGiPSGIGKL~~Levf~aanN~L--El 330 (1255)
T KOG0444|consen 275 LSRNQLTVLPDAVCKLTKLTKLYANNN----------------------KLTFEGIPSGIGKLIQLEVFHAANNKL--EL 330 (1255)
T ss_pred cccchhccchHHHhhhHHHHHHHhccC----------------------cccccCCccchhhhhhhHHHHhhcccc--cc
Confidence 555555555555555555555555544 445557888 99999999999999998 45
Q ss_pred CCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCC
Q 012027 159 IPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLP 207 (472)
Q Consensus 159 lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp 207 (472)
+|..++.+..|+.|.|+.|.+.++|..|.-|+.|+.|++..|++|..=|
T Consensus 331 VPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred CchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 9999999999999999999999999999999999999999999987433
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.59 E-value=1.2e-17 Score=159.61 Aligned_cols=192 Identities=30% Similarity=0.361 Sum_probs=108.4
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
+|+.|+.+.+.+.++|++|+.+-.|..|+..+|. +.++|.++.++.+|..|++.++ ++..+|+..-+|+.|++|+...
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccch
Confidence 3445555555555555555555555555555433 5556665666666666666663 3444555444577777777777
Q ss_pred ccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC--CCCCCCcCEEeccCCCCCCCCCC
Q 012027 83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS--LSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~--l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
|-+..+|..++.+.+|..|++..|+......+.......++....+.+. .+|. ..++++|..||+.+|++.+ +|
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~vLDLRdNklke--~P 268 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLVLDLRDNKLKE--VP 268 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH--hhHHHHhcccccceeeecccccccc--Cc
Confidence 7777777777777777777777766333222222222222222222222 2232 4456666666666666643 66
Q ss_pred CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcc
Q 012027 161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCK 201 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~ 201 (472)
+.+..+++|++||+++|.++.+|.+++++ .|+.|-+.+++
T Consensus 269 de~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 66666666666666666666666666666 66666666654
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=1.5e-17 Score=141.98 Aligned_cols=161 Identities=27% Similarity=0.427 Sum_probs=138.1
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
|.++..|.|++|.++.+|+.|+.|.+|+.|++.+|+ ++.+|.+|+.|+.|+.|++.- .++..+|..+|.++.|+.|++
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhc
Confidence 456788889999999999999999999999999876 889999999999999999987 457788999999999999999
Q ss_pred eCccCC--CCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCC
Q 012027 81 SGTAIR--CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA 158 (472)
Q Consensus 81 ~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~ 158 (472)
.+|.+. .+|..+..++.|+.|+|+++.... .+|.++.+++|+.|.+.+|.+.+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~-----------------------lp~dvg~lt~lqil~lrdndll~-- 164 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-----------------------LPPDVGKLTNLQILSLRDNDLLS-- 164 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCccc-----------------------CChhhhhhcceeEEeeccCchhh--
Confidence 998877 688888889999999988876322 24558899999999999998864
Q ss_pred CCCCCCCCCCCCEEEcCCCCCccCCcccCC
Q 012027 159 IPSDIGNLHSLKTLYLSKNNFVTLPASINC 188 (472)
Q Consensus 159 lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~ 188 (472)
+|..++.++.|++|.+.||.++.+|..+++
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 899999999999999999999999976654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.54 E-value=2.2e-17 Score=157.86 Aligned_cols=104 Identities=28% Similarity=0.480 Sum_probs=71.4
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
..|.+|++.++++.++|+.|+.+.+++.|+.+.++ +..+|..++.+.+|+.|+++.+ .+..+|+.++.+-.|+.|+..
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhcc
Confidence 45666777777777777777777777777777754 6667777777777777777764 345566667777777777777
Q ss_pred CccCCCCCccccCCCCCcEEEecCCC
Q 012027 82 GTAIRCPPSSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~ 107 (472)
.|.+..+|..++++.+|..|++.+++
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~ 171 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNK 171 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccc
Confidence 77777777777666666666666665
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=3.6e-14 Score=152.70 Aligned_cols=205 Identities=22% Similarity=0.363 Sum_probs=124.0
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
+|+.|+|++|.|+.+|..+. .+|+.|++++|. +..+|..+. .+|+.|+|++|. +..+|..+. .+|+.|++++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLFH 271 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcC
Confidence 46666777776666665443 467777777654 556665442 367777777764 345666553 4677777777
Q ss_pred ccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCC
Q 012027 83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD 162 (472)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~ 162 (472)
|.+..+|..+. ++|+.|++++|... ..+.........+....+.+.. +|. .-.++|+.|++++|.+.. +|..
T Consensus 272 N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~--LP~-~l~~sL~~L~Ls~N~Lt~--LP~~ 343 (754)
T PRK15370 272 NKISCLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTA--LPE-TLPPGLKTLEAGENALTS--LPAS 343 (754)
T ss_pred CccCccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCcccc--CCc-cccccceeccccCCcccc--CChh
Confidence 77777776553 47777777777532 2221111112223333443332 222 112567888888887753 6665
Q ss_pred CCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC-CCCCccEEEEccCCCcccccc
Q 012027 163 IGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ-LPPNVEKVRVNGCASLVTLLG 229 (472)
Q Consensus 163 l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~-lp~~L~~L~~~~c~sL~~~~~ 229 (472)
+. ++|+.|+|++|+++.+|..+. ++|+.|+|++|. +..+|. ++.+|+.|++.++ +|..++.
T Consensus 344 l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N-~L~~LP~ 405 (754)
T PRK15370 344 LP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNA-LTNLPENLPAALQIMQASRN-NLVRLPE 405 (754)
T ss_pred hc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCc-CCCCCHhHHHHHHHHhhccC-CcccCch
Confidence 53 678888888888887776553 578888888875 445553 4556777777775 4555543
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=1.8e-13 Score=147.36 Aligned_cols=204 Identities=24% Similarity=0.340 Sum_probs=142.0
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
.+..+|+++++.++.+|..+. ++|+.|+|++|+ +..+|..+. .+|++|++++|. +..+|..+. .+|+.|+|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECc
Confidence 356789999999999997663 689999999975 889998664 699999999975 667887663 579999999
Q ss_pred CccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCC
Q 012027 82 GTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
+|.+..+|..+. .+|+.|++++|... ..+......+..+....+.+.. +|. + .++|+.|++++|.+.. +|
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~N~Lt~--LP 320 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKIS-CLPENLPEELRYLSVYDNSIRT--LPAHL--PSGITHLNVQSNSLTA--LP 320 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccC-ccccccCCCCcEEECCCCcccc--Ccccc--hhhHHHHHhcCCcccc--CC
Confidence 999999998765 58999999987633 2332222222233333443332 222 1 1357777777777653 55
Q ss_pred CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC-CCCCccEEEEccCCCccccc
Q 012027 161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ-LPPNVEKVRVNGCASLVTLL 228 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~-lp~~L~~L~~~~c~sL~~~~ 228 (472)
..+. ++|+.|++++|.++.+|..+. ++|+.|++++|+ +..+|. +|++|+.|++.+| .|..++
T Consensus 321 ~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N-~Lt~LP 383 (754)
T PRK15370 321 ETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ-ITVLPETLPPTITTLDVSRN-ALTNLP 383 (754)
T ss_pred cccc--ccceeccccCCccccCChhhc--CcccEEECCCCC-CCcCChhhcCCcCEEECCCC-cCCCCC
Confidence 5432 577777888887777776653 678888888774 455664 5667778887776 354444
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=7e-13 Score=142.21 Aligned_cols=196 Identities=25% Similarity=0.339 Sum_probs=107.9
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
+|+.|++.+|+|+.+|. .+++|++|+|++|+ ++.+|.. .++|+.|++++|. +..+|.. .++|+.|++++
T Consensus 223 ~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~ 291 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFG 291 (788)
T ss_pred CCCEEEccCCcCCCCCC---CCCCCcEEEecCCc-cCcccCc---ccccceeeccCCc-hhhhhhc---hhhcCEEECcC
Confidence 34555555555555543 23556666666543 4555542 3455566666543 4445543 24566777777
Q ss_pred ccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCC
Q 012027 83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD 162 (472)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~ 162 (472)
|.++.+|.. +++|+.|++++|.... .+. .......+....+.+.. +|.+ ..+|+.|+|++|++.. +|..
T Consensus 292 N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~-lp~~L~~L~Ls~N~L~~--LP~l--p~~Lq~LdLS~N~Ls~--LP~l 360 (788)
T PRK15387 292 NQLTSLPVL---PPGLQELSVSDNQLAS-LPA-LPSELCKLWAYNNQLTS--LPTL--PSGLQELSVSDNQLAS--LPTL 360 (788)
T ss_pred Ccccccccc---ccccceeECCCCcccc-CCC-CcccccccccccCcccc--cccc--ccccceEecCCCccCC--CCCC
Confidence 777777652 4678888888875332 111 11111122223333321 2321 1368888888887753 6653
Q ss_pred CCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCCCCccEEEEccCCCccccc
Q 012027 163 IGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLL 228 (472)
Q Consensus 163 l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c~sL~~~~ 228 (472)
.++|+.|++++|.+..+|.. ..+|+.|++++|+ +..+|..|++|+.|+++++. |..++
T Consensus 361 ---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~-Lt~LP~l~s~L~~LdLS~N~-LssIP 418 (788)
T PRK15387 361 ---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNR-LTSLPVLPSELKELMVSGNR-LTSLP 418 (788)
T ss_pred ---CcccceehhhccccccCccc---ccccceEEecCCc-ccCCCCcccCCCEEEccCCc-CCCCC
Confidence 24566667777777766643 2456777777664 55666666677777776653 44444
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.46 E-value=7.9e-15 Score=146.36 Aligned_cols=196 Identities=26% Similarity=0.221 Sum_probs=113.6
Q ss_pred CccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 3 CLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+|+.|+|.+|-|+++-+ .+..++.|+.|||+.|. +..+|. ++..=.++++|+|++|....---..+..+.+|..|.|
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 57777777777776643 36777777777777754 555553 2333456777777776544333344556667777777
Q ss_pred eCccCCCCCccccC-CCCCcEEEecCCCCCC--CCCCCCCCcchhhh------------------------cccCCCCcC
Q 012027 81 SGTAIRCPPSSIFL-MKNLKTLSFRGCNGPP--SSASCYLPFPINLM------------------------RRSSDLGAL 133 (472)
Q Consensus 81 ~~~~i~~lp~~i~~-l~~L~~L~L~~~~~~~--~~~~~~~~~~~~l~------------------------~~~~~~~~~ 133 (472)
+.|.|+.+|..+.+ |++|+.|+|..|.... ...+..++.+..+. ...+++...
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 77777777654443 7777777776665211 11122222222222 222222222
Q ss_pred CCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCc
Q 012027 134 MLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDC 200 (472)
Q Consensus 134 ~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c 200 (472)
.--.+.++++|+.|++++|.+. ..-++.....++|++|+|+.|+++++++ ++..|+.|+.|+|++|
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred hcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence 2223556677777777777765 3345666677777888888887777764 3444445555554443
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.43 E-value=1e-14 Score=145.52 Aligned_cols=198 Identities=26% Similarity=0.245 Sum_probs=107.1
Q ss_pred CCccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCcc-CcccCCCCC------------------------CCEEE
Q 012027 2 ECLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRL-PSNINSLKS------------------------LKTLN 55 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~l-p~~i~~L~~------------------------L~~L~ 55 (472)
.+|..|-|+.|.|+.+|.- |.+|++|+.|+|..|. ++.. -..+.+|.+ +++|+
T Consensus 197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred chheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 4567777788888877754 5568888888887764 3332 123444444 44445
Q ss_pred ccCCCCchhhhhhhCCCCCCCEEeeeCccCCCC-CccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCc
Q 012027 56 LLGCFKFENLLETVGQVESLEELDISGTAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGA 132 (472)
Q Consensus 56 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 132 (472)
|..|+...---.++.++++|+.|++++|+|..+ +.++....+|+.|+|+.|....-.+ +..+..+.++-...+.+..
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence 544433222234455666777777777777654 5556666777777777665322111 1111111122222222222
Q ss_pred CCCCCCCCCCCcCEEeccCCCCCCCCCC---CCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCcc
Q 012027 133 LMLPSLSGLGSLTKLDLSDCGLGEGAIP---SDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCK 201 (472)
Q Consensus 133 ~~l~~l~~l~~L~~L~L~~~~l~~~~lp---~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~ 201 (472)
..--.+.++++|++|||+.|.++ +.+- ..+..+++|+.|+|.||+++.+|. .+..+..|+.|+|.+|.
T Consensus 356 l~e~af~~lssL~~LdLr~N~ls-~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 356 LAEGAFVGLSSLHKLDLRSNELS-WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred HHhhHHHHhhhhhhhcCcCCeEE-EEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 11112555666666666666543 2222 224556666666666666666664 45666666666666654
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=1.3e-14 Score=151.90 Aligned_cols=215 Identities=25% Similarity=0.310 Sum_probs=139.4
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
+|+.|+.+.|.+..+-. -..-.+|++++++.+. +..+|++++.+.+|+.|++..|. +..+|..+..+++|+.|.+..
T Consensus 220 ~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDV-HPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred chheeeeccCcceeecc-ccccccceeeecchhh-hhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhh
Confidence 45555555555553221 2234567777777754 66677777777777777777654 366677677777777777777
Q ss_pred ccCCCCCccccCCCCCcEEEecCCCCCCCCCCC----------------------------CCCcchhhhcccCCCCcCC
Q 012027 83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASC----------------------------YLPFPINLMRRSSDLGALM 134 (472)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~----------------------------~~~~~~~l~~~~~~~~~~~ 134 (472)
|.+..+|.....+++|+.|+|..|.... .+.. .......+....+.++...
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 7777777777777777777776654211 1110 0011112445567777777
Q ss_pred CCCCCCCCCcCEEeccCCCCCCCCCCCC-CCCCCCCCEEEcCCCCCccCCcccCC----------------------CCC
Q 012027 135 LPSLSGLGSLTKLDLSDCGLGEGAIPSD-IGNLHSLKTLYLSKNNFVTLPASINC----------------------LFN 191 (472)
Q Consensus 135 l~~l~~l~~L~~L~L~~~~l~~~~lp~~-l~~l~~L~~L~Ls~n~~~~lp~~i~~----------------------l~~ 191 (472)
.|-+.++.+|+.|+|++|.+. .+|+. +.++..|++|+||||+++.||..+.. ++.
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~q 453 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQ 453 (1081)
T ss_pred hhhhccccceeeeeecccccc--cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCc
Confidence 888999999999999999995 48875 78999999999999999888866544 455
Q ss_pred cceeeccCcccc-ccCC-CCC-CCccEEEEccCCC
Q 012027 192 LEKLKLEDCKRL-QSLP-QLP-PNVEKVRVNGCAS 223 (472)
Q Consensus 192 L~~L~l~~c~~L-~~lp-~lp-~~L~~L~~~~c~s 223 (472)
|+.+|++.|..- ..+| .+| +.|++|+++|.+.
T Consensus 454 L~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 555555544311 1122 245 7788888877765
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=2.2e-12 Score=138.39 Aligned_cols=199 Identities=25% Similarity=0.282 Sum_probs=135.6
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+++|++|+|++|+|+.+|.. .++|+.|++.+|. +..+|.. +.+|+.|++++|. +..+|.. +++|++|++
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdL 309 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSV 309 (788)
T ss_pred CCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeEC
Confidence 36899999999999999853 4688899999876 7777763 3568888888864 5567763 467888888
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
++|.+..+|... .+|+.|++++|.... .+. ....+..+....+.+.. +|.+ ..+|+.|++++|.+.. +|
T Consensus 310 S~N~L~~Lp~lp---~~L~~L~Ls~N~L~~-LP~-lp~~Lq~LdLS~N~Ls~--LP~l--p~~L~~L~Ls~N~L~~--LP 378 (788)
T PRK15387 310 SDNQLASLPALP---SELCKLWAYNNQLTS-LPT-LPSGLQELSVSDNQLAS--LPTL--PSELYKLWAYNNRLTS--LP 378 (788)
T ss_pred CCCccccCCCCc---ccccccccccCcccc-ccc-cccccceEecCCCccCC--CCCC--Ccccceehhhcccccc--Cc
Confidence 888888877633 346666677665321 111 01112223334444332 3332 3467888888888853 77
Q ss_pred CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCCCCccEEEEccCCCcccccc
Q 012027 161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLG 229 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c~sL~~~~~ 229 (472)
.. .++|+.|+|++|.++.+|... ++|+.|++++|+ +..+|.+|..|+.|++.++ .++.+|.
T Consensus 379 ~l---~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~N-qLt~LP~ 439 (788)
T PRK15387 379 AL---PSGLKELIVSGNRLTSLPVLP---SELKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPE 439 (788)
T ss_pred cc---ccccceEEecCCcccCCCCcc---cCCCEEEccCCc-CCCCCcchhhhhhhhhccC-cccccCh
Confidence 54 357888999999888888643 578888998875 6678888888888888764 3555554
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.22 E-value=2.4e-12 Score=126.82 Aligned_cols=201 Identities=18% Similarity=0.203 Sum_probs=122.4
Q ss_pred CCccEEEeeCCCCe-----eccccccCCcCCcEEEeecCcCC------CccCcccCCCCCCCEEEccCCCCchhhhhhhC
Q 012027 2 ECLRELLLDKTDIK-----EMPLSIELLSGLVQLTLKGCKNL------VRLPSNINSLKSLKTLNLLGCFKFENLLETVG 70 (472)
Q Consensus 2 ~~L~~L~L~~~~l~-----~lp~si~~L~~L~~L~L~~c~~l------~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~ 70 (472)
.+|++|+++++.++ .++..+...++|+.|+++++..- ..++..+..+.+|+.|++++|......+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 45777777777763 35555666777777777775422 12334455677778888877766544444444
Q ss_pred CCCC---CCEEeeeCccCCC-----CCccccCC-CCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCC-CCCC
Q 012027 71 QVES---LEELDISGTAIRC-----PPSSIFLM-KNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLP-SLSG 140 (472)
Q Consensus 71 ~l~~---L~~L~L~~~~i~~-----lp~~i~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~l~~ 140 (472)
.+.+ |++|++++|.+.. +...+..+ ++|+.|++++|....... ..+. .+..
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-------------------~~~~~~~~~ 163 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC-------------------EALAKALRA 163 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH-------------------HHHHHHHHh
Confidence 4443 7788887776652 23344555 777777777776321000 0011 1445
Q ss_pred CCCcCEEeccCCCCCCCC---CCCCCCCCCCCCEEEcCCCCCc-----cCCcccCCCCCcceeeccCccccc--------
Q 012027 141 LGSLTKLDLSDCGLGEGA---IPSDIGNLHSLKTLYLSKNNFV-----TLPASINCLFNLEKLKLEDCKRLQ-------- 204 (472)
Q Consensus 141 l~~L~~L~L~~~~l~~~~---lp~~l~~l~~L~~L~Ls~n~~~-----~lp~~i~~l~~L~~L~l~~c~~L~-------- 204 (472)
++.|++|++++|++.+.. ++..+..+++|+.|+|++|.+. .++..+..+++|+.|++++|+.-.
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~ 243 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS 243 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH
Confidence 667888888888776322 2233455578888888888775 344556777888888888875321
Q ss_pred cCCCCCCCccEEEEccC
Q 012027 205 SLPQLPPNVEKVRVNGC 221 (472)
Q Consensus 205 ~lp~lp~~L~~L~~~~c 221 (472)
.++...+.|+.|++.+|
T Consensus 244 ~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 244 ALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHhccCCCceEEEccCC
Confidence 11111257788888777
No 19
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=1.2e-12 Score=130.80 Aligned_cols=168 Identities=29% Similarity=0.417 Sum_probs=100.2
Q ss_pred ccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027 4 LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT 83 (472)
Q Consensus 4 L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 83 (472)
|+.|.|..|.|..+|..+.+|..|.+|||+.|. +..+|..++.|. |++|.+++ +++..+|+.++.+..|..|+.+.|
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN 176 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhh
Confidence 444555556666666666666666666666654 566666665443 66666665 345666666666666666666666
Q ss_pred cCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCC
Q 012027 84 AIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI 163 (472)
Q Consensus 84 ~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l 163 (472)
.+..+|+.++++.+|+.|.+..|..+. .++.+..++ |..||++.|++.. +|..|
T Consensus 177 ei~slpsql~~l~slr~l~vrRn~l~~-----------------------lp~El~~Lp-Li~lDfScNkis~--iPv~f 230 (722)
T KOG0532|consen 177 EIQSLPSQLGYLTSLRDLNVRRNHLED-----------------------LPEELCSLP-LIRLDFSCNKISY--LPVDF 230 (722)
T ss_pred hhhhchHHhhhHHHHHHHHHhhhhhhh-----------------------CCHHHhCCc-eeeeecccCceee--cchhh
Confidence 666666666666666666665554221 111133222 6666666666643 66666
Q ss_pred CCCCCCCEEEcCCCCCccCCccc---CCCCCcceeeccCc
Q 012027 164 GNLHSLKTLYLSKNNFVTLPASI---NCLFNLEKLKLEDC 200 (472)
Q Consensus 164 ~~l~~L~~L~Ls~n~~~~lp~~i---~~l~~L~~L~l~~c 200 (472)
..|+.|++|.|.+|.+.+=|..| +...-.++|+..-|
T Consensus 231 r~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 66666666666666666666554 33444556666665
No 20
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=2.4e-11 Score=123.67 Aligned_cols=176 Identities=34% Similarity=0.483 Sum_probs=125.4
Q ss_pred CccEEEeeCCCCeeccccccCCc-CCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 3 CLRELLLDKTDIKEMPLSIELLS-GLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~-~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
.++.|++.++.+.++++..+.+. +|+.|++++++ +..+|..+..+++|+.|+++.|. +..+|...+.+++|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheecc
Confidence 46777777777777777666664 77777777755 66776667777777777777753 55666666667777777777
Q ss_pred CccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCC
Q 012027 82 GTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPS 161 (472)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~ 161 (472)
++.+..+|..+..+..|+.|.++++.... .+..+..+..+..|.+..+.+.. ++.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-----------------------~~~~~~~~~~l~~l~l~~n~~~~--~~~ 249 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIE-----------------------LLSSLSNLKNLSGLELSNNKLED--LPE 249 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCccee-----------------------cchhhhhcccccccccCCceeee--ccc
Confidence 77777777776666677777777764111 12235666777777777776642 577
Q ss_pred CCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccC
Q 012027 162 DIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSL 206 (472)
Q Consensus 162 ~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~l 206 (472)
.++.+++++.|++++|.++.++. ++.+.+|+.|+++++.....+
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hhccccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence 78888888888888888888886 888888888888887654433
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=6.9e-12 Score=123.56 Aligned_cols=201 Identities=20% Similarity=0.214 Sum_probs=140.2
Q ss_pred CCccEEEeeCCCCee-------ccccccCCcCCcEEEeecCcCCCccCcccCCCCC---CCEEEccCCCCc----hhhhh
Q 012027 2 ECLRELLLDKTDIKE-------MPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKS---LKTLNLLGCFKF----ENLLE 67 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~-------lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~---L~~L~Ls~c~~l----~~lp~ 67 (472)
++|++|+++++.+.. ++..+..+++|+.|++++|......+..+..+.+ |++|++++|... ..+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 568999999887653 3455778899999999998865455555544554 999999998754 23455
Q ss_pred hhCCC-CCCCEEeeeCccCC-----CCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCC
Q 012027 68 TVGQV-ESLEELDISGTAIR-----CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGL 141 (472)
Q Consensus 68 ~l~~l-~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l 141 (472)
.+..+ ++|+.|++++|.++ .++..+..+++|+.|++++|...... .. .....+..+
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~--------------~l~~~l~~~ 192 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG----IR--------------ALAEGLKAN 192 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH----HH--------------HHHHHHHhC
Confidence 66777 89999999999988 34555677889999999988632100 00 001113455
Q ss_pred CCcCEEeccCCCCCCC---CCCCCCCCCCCCCEEEcCCCCCcc--C---Cccc-CCCCCcceeeccCcccc--------c
Q 012027 142 GSLTKLDLSDCGLGEG---AIPSDIGNLHSLKTLYLSKNNFVT--L---PASI-NCLFNLEKLKLEDCKRL--------Q 204 (472)
Q Consensus 142 ~~L~~L~L~~~~l~~~---~lp~~l~~l~~L~~L~Ls~n~~~~--l---p~~i-~~l~~L~~L~l~~c~~L--------~ 204 (472)
++|+.|++++|.+.+. .+...+..+++|++|++++|.+.. + ...+ ...+.|+.|++++|..- +
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 272 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE 272 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence 7899999999987532 134456778999999999998873 1 1111 13589999999999642 2
Q ss_pred cCCCCCCCccEEEEccC
Q 012027 205 SLPQLPPNVEKVRVNGC 221 (472)
Q Consensus 205 ~lp~lp~~L~~L~~~~c 221 (472)
.++.. +.|+.++++++
T Consensus 273 ~~~~~-~~L~~l~l~~N 288 (319)
T cd00116 273 VLAEK-ESLLELDLRGN 288 (319)
T ss_pred HHhcC-CCccEEECCCC
Confidence 33444 57888887764
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.13 E-value=8.9e-13 Score=138.31 Aligned_cols=194 Identities=27% Similarity=0.331 Sum_probs=126.6
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
.+|++++++.+.++.+|+.++.+.+|+.|+...|. +..+|..+...++|+.|.+..| .++.+|+..+.+++|++|+|.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeeh
Confidence 36888999999999999888999999999998865 6777777777777777777764 466677777777777777777
Q ss_pred CccCCCCCcc--------------------------------------------------ccCCCCCcEEEecCCCCCCC
Q 012027 82 GTAIRCPPSS--------------------------------------------------IFLMKNLKTLSFRGCNGPPS 111 (472)
Q Consensus 82 ~~~i~~lp~~--------------------------------------------------i~~l~~L~~L~L~~~~~~~~ 111 (472)
.|.+..+|.. +.+.++|+.|+|++|... .
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~ 397 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-S 397 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-c
Confidence 7776665532 223445555555554311 1
Q ss_pred CCCC---CCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--cCCcc
Q 012027 112 SASC---YLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV--TLPAS 185 (472)
Q Consensus 112 ~~~~---~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~--~lp~~ 185 (472)
.+.+ .+.....+..+++.++. +|. +..+..|++|...+|.+. .+| .+..++.|+.+|++.|+++ .+|..
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~--~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLL--SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCcee--ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 1111 11111223333333332 222 444555555555555553 367 6888999999999999987 45544
Q ss_pred cCCCCCcceeeccCccccc
Q 012027 186 INCLFNLEKLKLEDCKRLQ 204 (472)
Q Consensus 186 i~~l~~L~~L~l~~c~~L~ 204 (472)
... ++|++||+++|.++.
T Consensus 473 ~p~-p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 473 LPS-PNLKYLDLSGNTRLV 490 (1081)
T ss_pred CCC-cccceeeccCCcccc
Confidence 333 899999999998753
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=6.8e-11 Score=129.52 Aligned_cols=225 Identities=24% Similarity=0.358 Sum_probs=128.5
Q ss_pred CCccEEEeeCCC--Ceecccc-ccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027 2 ECLRELLLDKTD--IKEMPLS-IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL 78 (472)
Q Consensus 2 ~~L~~L~L~~~~--l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (472)
+.|+.|-+.++. +..++.. |..++.|++|||++|..+..+|.+|+.|-+|++|+++++ .+..+|..+++++.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence 346677777664 5555543 566777888888877777778877777888888888774 466777777777788888
Q ss_pred eeeCccCCC-CCccccCCCCCcEEEecCCC-CCCCCCCCCCCcchhhhcccCCCCc-CCCCCCCCCCCcC----EEeccC
Q 012027 79 DISGTAIRC-PPSSIFLMKNLKTLSFRGCN-GPPSSASCYLPFPINLMRRSSDLGA-LMLPSLSGLGSLT----KLDLSD 151 (472)
Q Consensus 79 ~L~~~~i~~-lp~~i~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-~~l~~l~~l~~L~----~L~L~~ 151 (472)
++..+.... +|..+..|.+|++|.+..-. .........+..+..+......... ..+..+..+..|. .+.+.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc
Confidence 777775443 33334447777777775533 0000000000000000000000000 0001111111121 222222
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCc-----cc-C-CCCCcceeeccCccccccCC--CCCCCccEEEEccCC
Q 012027 152 CGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA-----SI-N-CLFNLEKLKLEDCKRLQSLP--QLPPNVEKVRVNGCA 222 (472)
Q Consensus 152 ~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~-----~i-~-~l~~L~~L~l~~c~~L~~lp--~lp~~L~~L~~~~c~ 222 (472)
|.. ...+..++.+.+|+.|.+.++++..... .. . .+++|..+.+.+|..++.+. ..|++|+.|.+..|.
T Consensus 704 ~~~--~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 704 CSK--RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred ccc--ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence 332 2356667788888888888887753321 11 1 14567777778887777666 357899999999988
Q ss_pred Ccccccc
Q 012027 223 SLVTLLG 229 (472)
Q Consensus 223 sL~~~~~ 229 (472)
-++.+..
T Consensus 782 ~~e~~i~ 788 (889)
T KOG4658|consen 782 LLEDIIP 788 (889)
T ss_pred ccccCCC
Confidence 7776543
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=6.9e-12 Score=125.43 Aligned_cols=185 Identities=25% Similarity=0.331 Sum_probs=129.3
Q ss_pred EEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCC
Q 012027 7 LLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIR 86 (472)
Q Consensus 7 L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 86 (472)
.+|+.|.+.++|..+..+-.|..|.|+.|. +..+|..+++|..|.+|+|+.| .+..+|..+..++ |+.|-+++|.++
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNkl~ 156 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNKLT 156 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCccc
Confidence 455556666666666666666666666543 5666666666666666666663 3455666666554 666666666666
Q ss_pred CCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCC
Q 012027 87 CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGN 165 (472)
Q Consensus 87 ~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~ 165 (472)
.+|..|+.+..|..|+.+.|... .+|+ ++++.+|+.|.+..|++.. +|..++.
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~------------------------slpsql~~l~slr~l~vrRn~l~~--lp~El~~ 210 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQ------------------------SLPSQLGYLTSLRDLNVRRNHLED--LPEELCS 210 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhh------------------------hchHHhhhHHHHHHHHHhhhhhhh--CCHHHhC
Confidence 66666666666666666665421 2444 8899999999999999964 9999985
Q ss_pred CCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC------CCCCccEEEEccCC
Q 012027 166 LHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ------LPPNVEKVRVNGCA 222 (472)
Q Consensus 166 l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~------lp~~L~~L~~~~c~ 222 (472)
| .|..||++.|++..||..+.+++.|++|-|.+|+ |++=|. .-.-.++|++.-|.
T Consensus 211 L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 211 L-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred C-ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 5 4899999999999999999999999999999876 333221 11124677777773
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.99 E-value=1.5e-11 Score=118.08 Aligned_cols=200 Identities=23% Similarity=0.254 Sum_probs=130.3
Q ss_pred ccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhh---------------
Q 012027 4 LRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLE--------------- 67 (472)
Q Consensus 4 L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~--------------- 67 (472)
-..+.|+.|+|+.||+. |+.+++|+.|||+.|..-..-|.++.+|.+|-.|-+.++.++..+|.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 35678888888888765 78888899999988775455577788888888887777666665543
Q ss_pred ----------hhCCCCCCCEEeeeCccCCCCCc-cccCCCCCcEEEecCCCCCCC--------------CCCCCCCc--c
Q 012027 68 ----------TVGQVESLEELDISGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPS--------------SASCYLPF--P 120 (472)
Q Consensus 68 ----------~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~--------------~~~~~~~~--~ 120 (472)
.+..|++|..|.+.+|.+..++. ++..+..++.+.+..+...-. ...+.... +
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 34456666666667777766665 566677777776655441100 00111000 0
Q ss_pred hh--------------------h--hcccCCCCcCCCCC--CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCC
Q 012027 121 IN--------------------L--MRRSSDLGALMLPS--LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSK 176 (472)
Q Consensus 121 ~~--------------------l--~~~~~~~~~~~l~~--l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~ 176 (472)
.+ + .....+......|. |..+++|+.|+|++|.++ +.-+.+|..+..+++|.|.+
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCc
Confidence 00 0 01112222223344 778889999999999886 34456788888999999999
Q ss_pred CCCccCCc-ccCCCCCcceeeccCccccc
Q 012027 177 NNFVTLPA-SINCLFNLEKLKLEDCKRLQ 204 (472)
Q Consensus 177 n~~~~lp~-~i~~l~~L~~L~l~~c~~L~ 204 (472)
|++..+-. .+..++.|+.|+|.+|+.-.
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEE
Confidence 98876544 45788889999998876433
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.9e-10 Score=108.65 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=59.2
Q ss_pred CCccEEEeeCCCCeeccc--cccCCcCCcEEEeecCcC--CCccCcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCC
Q 012027 2 ECLRELLLDKTDIKEMPL--SIELLSGLVQLTLKGCKN--LVRLPSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLE 76 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~--si~~L~~L~~L~L~~c~~--l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~ 76 (472)
++|++..|+++.+...+. ....|++++.|||+.|=. ...+-.-...|++|+.|+|+.|....-.. ..-..+..|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 456777777766654442 356677777777776421 11222223456777777777754321111 1112456677
Q ss_pred EEeeeCccCC--CCCccccCCCCCcEEEecCCC
Q 012027 77 ELDISGTAIR--CPPSSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 77 ~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~ 107 (472)
.|.|++|++. .+-.....+++|+.|+|.+|.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 7777777766 333334456677777777664
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=9.2e-10 Score=112.04 Aligned_cols=160 Identities=32% Similarity=0.408 Sum_probs=135.1
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
+|+.|+++++++..+|..++.+++|+.|++++|+ +..+|...+.++.|+.|+++++ .+..+|..++.+..|++|.+++
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcC
Confidence 7999999999999998779999999999999987 8899987768999999999995 5778898877788899999999
Q ss_pred ccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCC
Q 012027 83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD 162 (472)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~ 162 (472)
|.+...+..+.+++++..|.+.++..... ...+..+++++.|+++.|.+++ ++.
T Consensus 219 N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-----------------------~~~~~~l~~l~~L~~s~n~i~~--i~~- 272 (394)
T COG4886 219 NSIIELLSSLSNLKNLSGLELSNNKLEDL-----------------------PESIGNLSNLETLDLSNNQISS--ISS- 272 (394)
T ss_pred CcceecchhhhhcccccccccCCceeeec-----------------------cchhccccccceeccccccccc--ccc-
Confidence 98888888899999999998777653220 1226778889999999999975 655
Q ss_pred CCCCCCCCEEEcCCCCCccCCcccCCCC
Q 012027 163 IGNLHSLKTLYLSKNNFVTLPASINCLF 190 (472)
Q Consensus 163 l~~l~~L~~L~Ls~n~~~~lp~~i~~l~ 190 (472)
++.+.+|+.|+++++.+..++.......
T Consensus 273 ~~~~~~l~~L~~s~n~~~~~~~~~~~~~ 300 (394)
T COG4886 273 LGSLTNLRELDLSGNSLSNALPLIALLL 300 (394)
T ss_pred ccccCccCEEeccCccccccchhhhccc
Confidence 9999999999999999987665444433
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=1.8e-09 Score=118.52 Aligned_cols=150 Identities=27% Similarity=0.359 Sum_probs=109.9
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcC-CCccCcc-cCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKN-LVRLPSN-INSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~-l~~lp~~-i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
..+...+-++.+..++.+.. .++|+.|-+.++.. +..++.. +..++.|++|||++|..+..+|+.++++-+|++|++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred heeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 35677777788877776554 34799999988763 5666654 677999999999999999999999999999999999
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCC-CC
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGE-GA 158 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~-~~ 158 (472)
++|.|..+|..+++|+.|.+|++..+..+.. ++. ...+++|++|.+....... ..
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~-----------------------~~~i~~~L~~Lr~L~l~~s~~~~~~~ 659 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLES-----------------------IPGILLELQSLRVLRLPRSALSNDKL 659 (889)
T ss_pred cCCCccccchHHHHHHhhheecccccccccc-----------------------ccchhhhcccccEEEeeccccccchh
Confidence 9999999999999999999999988764432 123 3346777777775543211 11
Q ss_pred CCCCCCCCCCCCEEEcCC
Q 012027 159 IPSDIGNLHSLKTLYLSK 176 (472)
Q Consensus 159 lp~~l~~l~~L~~L~Ls~ 176 (472)
.-..+..+.+|+.|....
T Consensus 660 ~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 660 LLKELENLEHLENLSITI 677 (889)
T ss_pred hHHhhhcccchhhheeec
Confidence 222344455555555433
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=3e-09 Score=94.47 Aligned_cols=89 Identities=21% Similarity=0.326 Sum_probs=18.0
Q ss_pred CeeccccccCCcCCcEEEeecCcCCCccCcccC-CCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccc
Q 012027 14 IKEMPLSIELLSGLVQLTLKGCKNLVRLPSNIN-SLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSI 92 (472)
Q Consensus 14 l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~-~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i 92 (472)
|++++. +.+..+++.|+|.+|. +..+.. ++ .+.+|++|++++|. +..+ +.+..+++|++|++++|.|+.+...+
T Consensus 9 i~~~~~-~~n~~~~~~L~L~~n~-I~~Ie~-L~~~l~~L~~L~Ls~N~-I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 9 IEQIAQ-YNNPVKLRELNLRGNQ-ISTIEN-LGATLDKLEVLDLSNNQ-ITKL-EGLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -----------------------------S---TT-TT--EEE-TTS---S---TT----TT--EEE--SS---S-CHHH
T ss_pred cccccc-cccccccccccccccc-cccccc-hhhhhcCCCEEECCCCC-Cccc-cCccChhhhhhcccCCCCCCccccch
Confidence 444443 4445556666666654 444432 43 35566666666653 2333 23455666666666666666554333
Q ss_pred -cCCCCCcEEEecCCC
Q 012027 93 -FLMKNLKTLSFRGCN 107 (472)
Q Consensus 93 -~~l~~L~~L~L~~~~ 107 (472)
..+++|+.|++++|.
T Consensus 84 ~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNK 99 (175)
T ss_dssp HHH-TT--EEE-TTS-
T ss_pred HHhCCcCCEEECcCCc
Confidence 234555555555443
No 30
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.77 E-value=3.7e-08 Score=97.89 Aligned_cols=73 Identities=26% Similarity=0.484 Sum_probs=49.3
Q ss_pred ccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc-cCCCCCccccCCCCCc
Q 012027 21 IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT-AIRCPPSSIFLMKNLK 99 (472)
Q Consensus 21 i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~ 99 (472)
+..+.+++.|++++| .++.+|. + ..+|++|.+++|..+..+|+.+ ..+|++|++++| .+..+|.+ |+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cc
Confidence 445677888888887 5777773 2 3468888888888877777655 357788888776 56666643 45
Q ss_pred EEEecC
Q 012027 100 TLSFRG 105 (472)
Q Consensus 100 ~L~L~~ 105 (472)
.|++.+
T Consensus 116 ~L~L~~ 121 (426)
T PRK15386 116 SLEIKG 121 (426)
T ss_pred eEEeCC
Confidence 555543
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.71 E-value=2.6e-08 Score=106.82 Aligned_cols=104 Identities=23% Similarity=0.316 Sum_probs=74.7
Q ss_pred ccEEEeeCCCCe-eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 4 LRELLLDKTDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 4 L~~L~L~~~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
++.|+|+++.+. .+|..++.|++|+.|+|++|.....+|..++.+++|++|+|++|...+.+|+.++++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777776 5677777777777777777765567777777777777777777776667777777777777777777
Q ss_pred ccCC-CCCccccCC-CCCcEEEecCCC
Q 012027 83 TAIR-CPPSSIFLM-KNLKTLSFRGCN 107 (472)
Q Consensus 83 ~~i~-~lp~~i~~l-~~L~~L~L~~~~ 107 (472)
|.+. .+|..++.+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 7776 667666553 455666666654
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=1.5e-09 Score=101.09 Aligned_cols=54 Identities=28% Similarity=0.353 Sum_probs=30.1
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccC
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLG 58 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~ 58 (472)
.|++|+|++|.|+.+..++.-+++++.|+++.|. +..+.. +..|.+|+.|+|++
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSG 338 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeeccc
Confidence 3556666666666666666666666666666644 333332 44455555555555
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.7e-09 Score=105.53 Aligned_cols=181 Identities=22% Similarity=0.245 Sum_probs=111.7
Q ss_pred ccCCcCCcEEEeecCcCCCccC--cccCCCCCCCEEEccCCCC--chhhhhhhCCCCCCCEEeeeCccCCCCCcc--ccC
Q 012027 21 IELLSGLVQLTLKGCKNLVRLP--SNINSLKSLKTLNLLGCFK--FENLLETVGQVESLEELDISGTAIRCPPSS--IFL 94 (472)
Q Consensus 21 i~~L~~L~~L~L~~c~~l~~lp--~~i~~L~~L~~L~Ls~c~~--l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~--i~~ 94 (472)
=.++.+|+.+.|.+|. ....+ .....+++++.|||++|-. ...+......+++|+.|+++.|.+...-++ -..
T Consensus 117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3567888888888865 33333 2455688888888888632 233556677788888888888877644322 124
Q ss_pred CCCCcEEEecCCCCCCCCC---CCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCE
Q 012027 95 MKNLKTLSFRGCNGPPSSA---SCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKT 171 (472)
Q Consensus 95 l~~L~~L~L~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~ 171 (472)
+++|+.|.|++|....... ...++....+....+.......-+...++.|++|+|++|++.+...-...+.++.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 6788888888886321100 1123333334444443222112224446678888888887754222245677888888
Q ss_pred EEcCCCCCcc--CCcc-----cCCCCCcceeeccCccc
Q 012027 172 LYLSKNNFVT--LPAS-----INCLFNLEKLKLEDCKR 202 (472)
Q Consensus 172 L~Ls~n~~~~--lp~~-----i~~l~~L~~L~l~~c~~ 202 (472)
|+++.+.+.+ +|+. ...+++|++|++..|+-
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 8888887763 3443 35678888888887764
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.66 E-value=2e-09 Score=103.74 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=72.8
Q ss_pred eCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC-ccCCC
Q 012027 10 DKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG-TAIRC 87 (472)
Q Consensus 10 ~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~-~~i~~ 87 (472)
++-+++++|..+ -..-+.|.|..|+ ++.+|+ ++..+++|+.|+|+.|..-..-|..+..+.+|..|-+.+ |.|+.
T Consensus 54 r~~GL~eVP~~L--P~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 54 RGKGLTEVPANL--PPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cCCCcccCcccC--CCcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 445677888533 3467788898876 888886 688999999999999877666789999999988887777 89999
Q ss_pred CCcc-ccCCCCCcEEEecCC
Q 012027 88 PPSS-IFLMKNLKTLSFRGC 106 (472)
Q Consensus 88 lp~~-i~~l~~L~~L~L~~~ 106 (472)
+|.. +++|.+|+.|.+.-|
T Consensus 131 l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred hhhhHhhhHHHHHHHhcChh
Confidence 9865 455666666666544
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=3e-08 Score=88.08 Aligned_cols=101 Identities=27% Similarity=0.336 Sum_probs=40.7
Q ss_pred CccEEEeeCCCCeecccccc-CCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhh-CCCCCCCEEee
Q 012027 3 CLRELLLDKTDIKEMPLSIE-LLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETV-GQVESLEELDI 80 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~-~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L~L 80 (472)
.+++|+|+++.|+.+.. ++ .+.+|+.|+|++|. ++.++. +..++.|++|++++|. +..+.+.+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ----------------S---TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccc-hhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccchHHhCCcCCEEEC
Confidence 57899999999998854 66 68999999999987 778875 7889999999999965 45565444 46899999999
Q ss_pred eCccCCCCC--ccccCCCCCcEEEecCCC
Q 012027 81 SGTAIRCPP--SSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 81 ~~~~i~~lp--~~i~~l~~L~~L~L~~~~ 107 (472)
++|.|..+- ..+..+++|+.|++.+|.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 999998653 346778999999999986
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5.9e-10 Score=103.69 Aligned_cols=105 Identities=22% Similarity=0.233 Sum_probs=76.1
Q ss_pred CccEEEeeCCCCe--eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhh--hhhhCCCCCCCEE
Q 012027 3 CLRELLLDKTDIK--EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENL--LETVGQVESLEEL 78 (472)
Q Consensus 3 ~L~~L~L~~~~l~--~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~l--p~~l~~l~~L~~L 78 (472)
.|+.|||+...|+ .+...+..+.+|+-|.|++...-..+-..|.+-.+|+.|+|++|+.+.+. --.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3678888888877 56666788899999999887655555566777788999999999887653 3456778888889
Q ss_pred eeeCccCCC--CCccccCC-CCCcEEEecCCC
Q 012027 79 DISGTAIRC--PPSSIFLM-KNLKTLSFRGCN 107 (472)
Q Consensus 79 ~L~~~~i~~--lp~~i~~l-~~L~~L~L~~~~ 107 (472)
+++.|.... +-..+.+. +.|+.|+++||.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 888886552 12222222 567778888876
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.58 E-value=3.5e-07 Score=91.07 Aligned_cols=61 Identities=30% Similarity=0.578 Sum_probs=32.3
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhh
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLE 67 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~ 67 (472)
++++.|++++|.|+.+|. ...+|+.|++++|..++.+|..+ ..+|++|++++|..+..+|+
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 345556666555555551 22345566666655555555433 23556666665555554443
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=1.2e-07 Score=101.82 Aligned_cols=69 Identities=33% Similarity=0.523 Sum_probs=35.3
Q ss_pred CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCC
Q 012027 138 LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLP 207 (472)
Q Consensus 138 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp 207 (472)
+..+++|+.|+|++|++. +.+|..++.+++|+.|+|++|++. .+|..++.+++|+.|+|++|.....+|
T Consensus 438 i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred HhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence 444555555555555543 345555555555555555555554 445555555555555555554444444
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=1.3e-08 Score=94.94 Aligned_cols=103 Identities=31% Similarity=0.329 Sum_probs=68.4
Q ss_pred CCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccC
Q 012027 72 VESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSD 151 (472)
Q Consensus 72 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~ 151 (472)
.+.|++|||++|.|+++-.++.-++.++.|+++.|.... ..++..+++|+.|||++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~------------------------v~nLa~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT------------------------VQNLAELPQLQLLDLSG 338 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceee------------------------ehhhhhcccceEeeccc
Confidence 356778888888888887777777888888887776332 22355667777777777
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcc
Q 012027 152 CGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCK 201 (472)
Q Consensus 152 ~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~ 201 (472)
|.+++ +.-.-..+-+++.|.|++|.+..+. +++.|..|..|++++|+
T Consensus 339 N~Ls~--~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 339 NLLAE--CVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred chhHh--hhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccc
Confidence 76643 3333345566677777777766654 56666777777776653
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.41 E-value=1.7e-08 Score=96.15 Aligned_cols=181 Identities=24% Similarity=0.244 Sum_probs=122.9
Q ss_pred CCccEEEeeCCCCe--ec---cccccCCcCCcEEEeecCcCCCcc--------------CcccCCCCCCCEEEccCCCCc
Q 012027 2 ECLRELLLDKTDIK--EM---PLSIELLSGLVQLTLKGCKNLVRL--------------PSNINSLKSLKTLNLLGCFKF 62 (472)
Q Consensus 2 ~~L~~L~L~~~~l~--~l---p~si~~L~~L~~L~L~~c~~l~~l--------------p~~i~~L~~L~~L~Ls~c~~l 62 (472)
+.|++|+|++|.+. .+ -.-|..+..|++|.|.+|. +... -.-+.+-..|+++...+|..-
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 57888888888765 22 2235668888888888886 3211 112334567888888886533
Q ss_pred h----hhhhhhCCCCCCCEEeeeCccCCC-----CCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcC
Q 012027 63 E----NLLETVGQVESLEELDISGTAIRC-----PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGAL 133 (472)
Q Consensus 63 ~----~lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 133 (472)
. .+...+...+.|+.+.+..|.|.. +-..+.++++|+.|+|++|..... .+.
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e-------------------gs~ 231 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE-------------------GSV 231 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH-------------------HHH
Confidence 2 255667778899999999988762 234567889999999998762211 000
Q ss_pred CCCC-CCCCCCcCEEeccCCCCCCCCC---CCCC-CCCCCCCEEEcCCCCCc-----cCCcccCCCCCcceeeccCccc
Q 012027 134 MLPS-LSGLGSLTKLDLSDCGLGEGAI---PSDI-GNLHSLKTLYLSKNNFV-----TLPASINCLFNLEKLKLEDCKR 202 (472)
Q Consensus 134 ~l~~-l~~l~~L~~L~L~~~~l~~~~l---p~~l-~~l~~L~~L~Ls~n~~~-----~lp~~i~~l~~L~~L~l~~c~~ 202 (472)
.+.. ++.|++|++|++++|.+....- -+.+ ...++|+.|.+.+|.++ .+-.++...+.|+.|+|++|..
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1112 5667899999999998864221 1222 34789999999999887 3445677789999999999864
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.38 E-value=4.4e-08 Score=100.29 Aligned_cols=32 Identities=38% Similarity=0.510 Sum_probs=20.6
Q ss_pred CCEEEcCCCCCccCCcccCCCCCcceeeccCc
Q 012027 169 LKTLYLSKNNFVTLPASINCLFNLEKLKLEDC 200 (472)
Q Consensus 169 L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c 200 (472)
|+.+++++|.+..++..+..+..+..|++.++
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhc
Confidence 66666677766666555666666666666654
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=7.3e-07 Score=64.93 Aligned_cols=58 Identities=28% Similarity=0.390 Sum_probs=43.2
Q ss_pred CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCC
Q 012027 2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCF 60 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~ 60 (472)
++|++|++++|+|+.+|+ .+..+++|++|++++|. +..+| ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 578888888888888875 46778888888888766 45554 456778888888887764
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.08 E-value=3.3e-06 Score=61.42 Aligned_cols=59 Identities=25% Similarity=0.333 Sum_probs=32.7
Q ss_pred cCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCcc
Q 012027 25 SGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTA 84 (472)
Q Consensus 25 ~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~ 84 (472)
++|++|++++|+ +..+|. .+..+++|++|++++|....--|..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356666666653 555553 45556666666666544332223455666666666666654
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.04 E-value=3.5e-07 Score=87.29 Aligned_cols=38 Identities=29% Similarity=0.512 Sum_probs=16.7
Q ss_pred CCCCCCCCEEEcCCCCCc-----cCCcccCCCCCcceeeccCc
Q 012027 163 IGNLHSLKTLYLSKNNFV-----TLPASINCLFNLEKLKLEDC 200 (472)
Q Consensus 163 l~~l~~L~~L~Ls~n~~~-----~lp~~i~~l~~L~~L~l~~c 200 (472)
+..+++|+.|||..|-|+ .+-..+..+++|+.|++++|
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 344455555555555443 12222333444444444444
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=8.3e-06 Score=54.88 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=32.6
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS 43 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~ 43 (472)
++|++|++++|+|+.+|+.+++|++|++|++++|+ +..++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 57899999999999998889999999999999986 555553
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.93 E-value=8.9e-07 Score=90.70 Aligned_cols=129 Identities=28% Similarity=0.349 Sum_probs=71.0
Q ss_pred CcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEe
Q 012027 24 LSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSF 103 (472)
Q Consensus 24 L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 103 (472)
+..++.+++..+. +..+-..+..+++|+.|++.++. +..+...+..|++|++|++++|.|..+.. +..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~-i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNL-IAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhh-hhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccccccccc-hhhccchhhhee
Confidence 4555555555543 33333335566677777776643 44444445666777777777777766543 455556777777
Q ss_pred cCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCC-CCCCCCCCEEEcCCCCCcc
Q 012027 104 RGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD-IGNLHSLKTLYLSKNNFVT 181 (472)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~-l~~l~~L~~L~Ls~n~~~~ 181 (472)
.+|.... +..+..+.+|+.+++++|.+.. +... +..+.+++.+.+.+|.+..
T Consensus 148 ~~N~i~~------------------------~~~~~~l~~L~~l~l~~n~i~~--ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 148 SGNLISD------------------------ISGLESLKSLKLLDLSYNRIVD--IENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccCcchh------------------------ccCCccchhhhcccCCcchhhh--hhhhhhhhccchHHHhccCCchhc
Confidence 6665221 2223345566666666665542 2222 3555666666666665543
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.6e-05 Score=53.47 Aligned_cols=33 Identities=39% Similarity=0.554 Sum_probs=19.6
Q ss_pred CCCEEEcCCCCCccCCcccCCCCCcceeeccCc
Q 012027 168 SLKTLYLSKNNFVTLPASINCLFNLEKLKLEDC 200 (472)
Q Consensus 168 ~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c 200 (472)
+|++|++++|+++.+|..+++|++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 456666666666666655666666666666665
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=8.2e-07 Score=83.08 Aligned_cols=108 Identities=25% Similarity=0.304 Sum_probs=74.1
Q ss_pred CCccEEEeeCCCCe-eccccccCCcCCcEEEeecCcCCCccCc--ccCCCCCCCEEEccCCCCchhhhhh-hCC-CCCCC
Q 012027 2 ECLRELLLDKTDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPS--NINSLKSLKTLNLLGCFKFENLLET-VGQ-VESLE 76 (472)
Q Consensus 2 ~~L~~L~L~~~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~--~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~-l~~L~ 76 (472)
..|+.|.|.|..+. .+-..|+.=.+|+.|||+.|..++.... -+.+++.|..|+|++|......-.. +.. -++|+
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 46888999998887 5555688889999999999987775432 2467899999999999765432111 111 25788
Q ss_pred EEeeeCccCC----CCCccccCCCCCcEEEecCCCCC
Q 012027 77 ELDISGTAIR----CPPSSIFLMKNLKTLSFRGCNGP 109 (472)
Q Consensus 77 ~L~L~~~~i~----~lp~~i~~l~~L~~L~L~~~~~~ 109 (472)
.|+++|+.-. .+..-..++++|..|||++|..+
T Consensus 290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred hhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 8999987421 22222345667777777766543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.77 E-value=3.5e-07 Score=94.66 Aligned_cols=42 Identities=36% Similarity=0.329 Sum_probs=20.5
Q ss_pred CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCC
Q 012027 138 LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNF 179 (472)
Q Consensus 138 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~ 179 (472)
+.++.+|+.||+++|-+.+-.-...+..+..|..|.|.||.+
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 445555556666655443211122244455555555655544
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=1.1e-05 Score=75.80 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=58.1
Q ss_pred CCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCC--cccCCCCCcceeeccCccccccCCCCCCCccEEEE
Q 012027 141 LGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLP--ASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRV 218 (472)
Q Consensus 141 l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp--~~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~~ 218 (472)
++++..+-+..|.+....--.....++.+-.|+|+.+++.++. ..+..++.|..|.+.+++.+..+.. .-=+.|-+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llI 275 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLI 275 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEE
Confidence 4667777777776543333344566777888999999988654 3678899999999999887766654 11223445
Q ss_pred ccCCCccccccc
Q 012027 219 NGCASLVTLLGA 230 (472)
Q Consensus 219 ~~c~sL~~~~~~ 230 (472)
...+.++.+.++
T Consensus 276 aRL~~v~vLNGs 287 (418)
T KOG2982|consen 276 ARLTKVQVLNGS 287 (418)
T ss_pred eeccceEEecCc
Confidence 555555555443
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.46 E-value=3e-06 Score=87.98 Aligned_cols=99 Identities=26% Similarity=0.210 Sum_probs=54.4
Q ss_pred CCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCC
Q 012027 75 LEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGL 154 (472)
Q Consensus 75 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l 154 (472)
|...+.++|++..+-.++.-++.|+.|+|+.|+... ...+..++.|++|||++|.+
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~------------------------v~~Lr~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK------------------------VDNLRRLPKLKHLDLSYNCL 221 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh------------------------hHHHHhcccccccccccchh
Confidence 444455555555555556666666666666655211 11244556666666666666
Q ss_pred CCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCc
Q 012027 155 GEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDC 200 (472)
Q Consensus 155 ~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c 200 (472)
.. +|..-..--.|+.|.|++|.++++- +|.+|.+|+.||+++|
T Consensus 222 ~~--vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 222 RH--VPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLDLSYN 264 (1096)
T ss_pred cc--ccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccchhHh
Confidence 42 4432111122666666666666554 5666666666666665
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=3.9e-05 Score=82.67 Aligned_cols=155 Identities=28% Similarity=0.251 Sum_probs=95.8
Q ss_pred CcCCcEEEeecCcCCCccC-ccc-CCCCCCCEEEccCCCCc-hhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcE
Q 012027 24 LSGLVQLTLKGCKNLVRLP-SNI-NSLKSLKTLNLLGCFKF-ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKT 100 (472)
Q Consensus 24 L~~L~~L~L~~c~~l~~lp-~~i-~~L~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 100 (472)
-.+|++|++++...+..-. ..+ ..|++|+.|.++|=... ..+-....+.++|..||+++|.++.+ ..|++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 3578888888744332211 112 24788888888873221 22445556788899999999998887 77888999998
Q ss_pred EEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCC-CC----CCCCCCCCCCEEEcC
Q 012027 101 LSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA-IP----SDIGNLHSLKTLYLS 175 (472)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~-lp----~~l~~l~~L~~L~Ls 175 (472)
|.+.+-..... ..+..+.++++|+.||+|........ +. +.-..|+.|+.||.|
T Consensus 200 L~mrnLe~e~~---------------------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 200 LSMRNLEFESY---------------------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HhccCCCCCch---------------------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 88776331110 12233667888999999887543221 11 112347889999999
Q ss_pred CCCCc--cCCcccCCCCCcceeeccCc
Q 012027 176 KNNFV--TLPASINCLFNLEKLKLEDC 200 (472)
Q Consensus 176 ~n~~~--~lp~~i~~l~~L~~L~l~~c 200 (472)
|+.+. .+-..+..-++|+.+.+-+|
T Consensus 259 gTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 259 GTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred CcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 88776 22223344455555544433
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.26 E-value=1.5e-05 Score=66.58 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=82.5
Q ss_pred ccEEEeeCCCCeecccc---ccCCcCCcEEEeecCcCCCccCcccC-CCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027 4 LRELLLDKTDIKEMPLS---IELLSGLVQLTLKGCKNLVRLPSNIN-SLKSLKTLNLLGCFKFENLLETVGQVESLEELD 79 (472)
Q Consensus 4 L~~L~L~~~~l~~lp~s---i~~L~~L~~L~L~~c~~l~~lp~~i~-~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (472)
+..|+|+.|.|-.++.. +.....|...+|++|. ++.+|..+. +.+.+++|+++. +.+..+|+.+..|+.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence 45678888887766655 4455667777999976 788887654 445789999998 46788999999999999999
Q ss_pred eeCccCCCCCccccCCCCCcEEEecCCCC
Q 012027 80 ISGTAIRCPPSSIFLMKNLKTLSFRGCNG 108 (472)
Q Consensus 80 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~ 108 (472)
++.|.+...|.-|..|.+|..|+..++..
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 99999999998888899999998887753
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.12 E-value=0.00073 Score=60.32 Aligned_cols=100 Identities=20% Similarity=0.145 Sum_probs=65.3
Q ss_pred cEEEeeCCCCeecccccc-CCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027 5 RELLLDKTDIKEMPLSIE-LLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT 83 (472)
Q Consensus 5 ~~L~L~~~~l~~lp~si~-~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 83 (472)
++++|++..+..+-. ++ -+.+...+||.+|. +..++. +..+..|.+|.|.+|.....-|..-.-+++|+.|.+.+|
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 345666655543322 22 24567788888865 555554 556888888888886655444443344577888999888
Q ss_pred cCCCCC--ccccCCCCCcEEEecCCC
Q 012027 84 AIRCPP--SSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 84 ~i~~lp--~~i~~l~~L~~L~L~~~~ 107 (472)
.|.++- .-+..++.|++|.+-+|.
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCc
Confidence 888652 235567788888887776
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.11 E-value=5.5e-05 Score=63.25 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=76.6
Q ss_pred CccEEEeeCCCCeecccccc-CCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 3 CLRELLLDKTDIKEMPLSIE-LLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~-~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
.|...+|++|.++.+|+.+. ..+.++.|||++|+ +..+|..+..++.|+.|+++.|. +...|+.+..+.+|-.|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCC
Confidence 46778999999999999874 55699999999976 89999999999999999999965 66788888889999999999
Q ss_pred CccCCCCCcc
Q 012027 82 GTAIRCPPSS 91 (472)
Q Consensus 82 ~~~i~~lp~~ 91 (472)
++++.++|..
T Consensus 132 ~na~~eid~d 141 (177)
T KOG4579|consen 132 ENARAEIDVD 141 (177)
T ss_pred CCccccCcHH
Confidence 9999998865
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.05 E-value=9.4e-06 Score=79.42 Aligned_cols=105 Identities=24% Similarity=0.283 Sum_probs=67.3
Q ss_pred ccEEEeeCCC---CeeccccccCCcCCcEEEeecCcCCCccC--cccCCCCCCCEEEccCCCCchhh--hhhhCCCCCCC
Q 012027 4 LRELLLDKTD---IKEMPLSIELLSGLVQLTLKGCKNLVRLP--SNINSLKSLKTLNLLGCFKFENL--LETVGQVESLE 76 (472)
Q Consensus 4 L~~L~L~~~~---l~~lp~si~~L~~L~~L~L~~c~~l~~lp--~~i~~L~~L~~L~Ls~c~~l~~l--p~~l~~l~~L~ 76 (472)
|+.|.++|+. .+.+-....+++++++|++.+|++++.-. ..-..+..|++|++..|..+... -.....+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 6778888763 22333445678888888888888665321 11134678888888888776542 22345678888
Q ss_pred EEeeeCc-cCCC--CCccccCCCCCcEEEecCCCC
Q 012027 77 ELDISGT-AIRC--PPSSIFLMKNLKTLSFRGCNG 108 (472)
Q Consensus 77 ~L~L~~~-~i~~--lp~~i~~l~~L~~L~L~~~~~ 108 (472)
+|+++.+ .|+. +-.-..+++.|+.+.+.||..
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e 254 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE 254 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhccccc
Confidence 8888876 3442 333345566677777777763
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.99 E-value=0.00041 Score=74.89 Aligned_cols=103 Identities=23% Similarity=0.349 Sum_probs=50.8
Q ss_pred CCCccEEEeeCCCCe--eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchh--hhhhhCCCCCCC
Q 012027 1 MECLRELLLDKTDIK--EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFEN--LLETVGQVESLE 76 (472)
Q Consensus 1 l~~L~~L~L~~~~l~--~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~--lp~~l~~l~~L~ 76 (472)
||+|+.|.+.+-.+. ++-.-..++++|..||++++. +..+ .++++|++|++|.+.+ -.++. --..+.++++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHhccC-CCCCchhhHHHHhcccCCC
Confidence 355555555554332 222223456666666666633 4444 4466666666666554 22221 112345566666
Q ss_pred EEeeeCccCCCCCcc-------ccCCCCCcEEEecCC
Q 012027 77 ELDISGTAIRCPPSS-------IFLMKNLKTLSFRGC 106 (472)
Q Consensus 77 ~L~L~~~~i~~lp~~-------i~~l~~L~~L~L~~~ 106 (472)
.||+|......-+.. -..|+.|+.||.++.
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 666666543322211 112566666666654
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.87 E-value=5.5e-05 Score=74.15 Aligned_cols=226 Identities=19% Similarity=0.205 Sum_probs=110.3
Q ss_pred CCCccEEEeeCCC-Ceec-cccc-cCCcCCcEEEeecCcCCCccC--cccCCCCCCCEEEccCCCCchh--hhhhhCCCC
Q 012027 1 MECLRELLLDKTD-IKEM-PLSI-ELLSGLVQLTLKGCKNLVRLP--SNINSLKSLKTLNLLGCFKFEN--LLETVGQVE 73 (472)
Q Consensus 1 l~~L~~L~L~~~~-l~~l-p~si-~~L~~L~~L~L~~c~~l~~lp--~~i~~L~~L~~L~Ls~c~~l~~--lp~~l~~l~ 73 (472)
++|++.|.+.++. |+.- -.++ ..+++|++|+|..|.+++..- .-...+++|++|++++|..+.. +-....+++
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~ 242 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCK 242 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccch
Confidence 3677777777763 3311 1122 457788888888877666432 1123467788888888765543 222234455
Q ss_pred CCCEEeeeCccCCCC---CccccCCCCCcEEEecCCCCCCCCCCC----CCCcchhhhc-ccCCCCcCCCCC-CCCCCCc
Q 012027 74 SLEELDISGTAIRCP---PSSIFLMKNLKTLSFRGCNGPPSSASC----YLPFPINLMR-RSSDLGALMLPS-LSGLGSL 144 (472)
Q Consensus 74 ~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~~~~~~~~~----~~~~~~~l~~-~~~~~~~~~l~~-l~~l~~L 144 (472)
.|+.+.+.||.-.++ -..-..+.-+..+++..|..+.....- .......+.. ...+.+...+-. -.+..+|
T Consensus 243 ~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L 322 (483)
T KOG4341|consen 243 ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNL 322 (483)
T ss_pred hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCce
Confidence 555555554322111 011112222333333344211110000 0000000000 000111111111 2345778
Q ss_pred CEEeccCCC-CCCCCCCCCCCCCCCCCEEEcCCCCCc---cCCcccCCCCCcceeeccCccccccC--------CCCCCC
Q 012027 145 TKLDLSDCG-LGEGAIPSDIGNLHSLKTLYLSKNNFV---TLPASINCLFNLEKLKLEDCKRLQSL--------PQLPPN 212 (472)
Q Consensus 145 ~~L~L~~~~-l~~~~lp~~l~~l~~L~~L~Ls~n~~~---~lp~~i~~l~~L~~L~l~~c~~L~~l--------p~lp~~ 212 (472)
+.|-++.|. +++..+-..-.+.+.|+.+++.++... ++-..-.+++.|+.|.+++|...... ..-...
T Consensus 323 ~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~ 402 (483)
T KOG4341|consen 323 QVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEG 402 (483)
T ss_pred EEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccc
Confidence 888888885 332112222245678888888877543 34444457888888888888765433 122245
Q ss_pred ccEEEEccCCCccc
Q 012027 213 VEKVRVNGCASLVT 226 (472)
Q Consensus 213 L~~L~~~~c~sL~~ 226 (472)
++.+.+++|+....
T Consensus 403 l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 403 LEVLELDNCPLITD 416 (483)
T ss_pred cceeeecCCCCchH
Confidence 66677777766543
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.62 E-value=0.00099 Score=62.10 Aligned_cols=190 Identities=19% Similarity=0.209 Sum_probs=108.8
Q ss_pred ccCCcCCcEEEeecCcCCCc----cCcccCCCCCCCEEEccCCCC----------chhhhhhhCCCCCCCEEeeeCccCC
Q 012027 21 IELLSGLVQLTLKGCKNLVR----LPSNINSLKSLKTLNLLGCFK----------FENLLETVGQVESLEELDISGTAIR 86 (472)
Q Consensus 21 i~~L~~L~~L~L~~c~~l~~----lp~~i~~L~~L~~L~Ls~c~~----------l~~lp~~l~~l~~L~~L~L~~~~i~ 86 (472)
+.-+..++.++|++|+.-+. +...|.+-++|++.++++-.. +..+...+-.++.|+..+|+.|++.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34467777788887763332 333455566777777765211 1123344567788888888888877
Q ss_pred -CCCc----cccCCCCCcEEEecCCCCCCCCCCCCC-CcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027 87 -CPPS----SIFLMKNLKTLSFRGCNGPPSSASCYL-PFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 87 -~lp~----~i~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
+.|. .|.+-+.|++|.+++|.. .+.....+ .-. +... .......-+.|+......|++..+..-
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal--~~la-------~nKKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKAL--FHLA-------YNKKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHH--HHHH-------HHhhhccCCCceEEEeccchhccCcHH
Confidence 4443 356678888888888762 21110000 000 0000 011134456688888887776543211
Q ss_pred ---CCCCCCCCCCEEEcCCCCCcc------CCcccCCCCCcceeeccCccccc--------cCCCCCCCccEEEEccC
Q 012027 161 ---SDIGNLHSLKTLYLSKNNFVT------LPASINCLFNLEKLKLEDCKRLQ--------SLPQLPPNVEKVRVNGC 221 (472)
Q Consensus 161 ---~~l~~l~~L~~L~Ls~n~~~~------lp~~i~~l~~L~~L~l~~c~~L~--------~lp~lp~~L~~L~~~~c 221 (472)
..+..-.+|+.+.+..|.+.. +-..+.++.+|+.|++..|..-. .++..+ .|+.|.+.+|
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDC 252 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDC 252 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccch
Confidence 123334678888888887751 11245677888888888875432 223333 4788888887
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.40 E-value=0.0056 Score=54.82 Aligned_cols=102 Identities=22% Similarity=0.337 Sum_probs=79.4
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccC-CCCCCCEEEccCCCCchhhh--hhhCCCCCCCEEe
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNIN-SLKSLKTLNLLGCFKFENLL--ETVGQVESLEELD 79 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~-~L~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L~ 79 (472)
+...++|++|.+..++. +..++.|..|.|.+|. +..+...+. .+++|++|.|.+|+.. .+- +-+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 45678999999988876 8889999999999976 666655454 4567999999997643 332 3356788999999
Q ss_pred eeCccCCCCC----ccccCCCCCcEEEecCCC
Q 012027 80 ISGTAIRCPP----SSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 80 L~~~~i~~lp----~~i~~l~~L~~L~L~~~~ 107 (472)
+-+|.+..-. -.+..+++|+.||..+-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9999988553 347789999999998765
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.30 E-value=0.00051 Score=71.42 Aligned_cols=107 Identities=25% Similarity=0.368 Sum_probs=45.3
Q ss_pred CCccEEEeeCC-CCee--ccccccCCcCCcEEEeecC-cCCCccC----cccCCCCCCCEEEccCCCCchh--hhhhhCC
Q 012027 2 ECLRELLLDKT-DIKE--MPLSIELLSGLVQLTLKGC-KNLVRLP----SNINSLKSLKTLNLLGCFKFEN--LLETVGQ 71 (472)
Q Consensus 2 ~~L~~L~L~~~-~l~~--lp~si~~L~~L~~L~L~~c-~~l~~lp----~~i~~L~~L~~L~Ls~c~~l~~--lp~~l~~ 71 (472)
++|+.|.+.++ .+.. +-.....+++|+.|++++| ......+ .....+.+|+.|++++|..+.. +......
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 34444444443 2332 2233445555555555552 2111111 1122345555555555553221 1111122
Q ss_pred CCCCCEEeeeCcc-CC--CCCccccCCCCCcEEEecCCCC
Q 012027 72 VESLEELDISGTA-IR--CPPSSIFLMKNLKTLSFRGCNG 108 (472)
Q Consensus 72 l~~L~~L~L~~~~-i~--~lp~~i~~l~~L~~L~L~~~~~ 108 (472)
+++|++|.+.++. ++ .+-.....+++|+.|++++|..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 5555665554443 32 2222333455566666665553
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.00 E-value=0.0039 Score=57.94 Aligned_cols=64 Identities=33% Similarity=0.405 Sum_probs=41.3
Q ss_pred CCCCCCcCEEeccCC--CCCCCCCCCCCCCCCCCCEEEcCCCCCcc---CCcccCCCCCcceeeccCcccc
Q 012027 138 LSGLGSLTKLDLSDC--GLGEGAIPSDIGNLHSLKTLYLSKNNFVT---LPASINCLFNLEKLKLEDCKRL 203 (472)
Q Consensus 138 l~~l~~L~~L~L~~~--~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~---lp~~i~~l~~L~~L~l~~c~~L 203 (472)
+..+++|+.|.++.| .++ +.++.-...+++|++|+|++|.+.. ++ .+..+.+|..|++.+|.-.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCcc
Confidence 455667888888877 444 3344445556888888888887763 22 3455666667777776533
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.99 E-value=0.0034 Score=35.21 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=13.0
Q ss_pred CccEEEeeCCCCeeccccccC
Q 012027 3 CLRELLLDKTDIKEMPLSIEL 23 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~ 23 (472)
+|++|+|++|+|+++|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466666666666666665543
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.80 E-value=0.0014 Score=61.12 Aligned_cols=182 Identities=17% Similarity=0.142 Sum_probs=113.1
Q ss_pred CCCccEEEeeCCCCe-----eccccccCCcCCcEEEeecCcCCC----ccC-------cccCCCCCCCEEEccCCCCchh
Q 012027 1 MECLRELLLDKTDIK-----EMPLSIELLSGLVQLTLKGCKNLV----RLP-------SNINSLKSLKTLNLLGCFKFEN 64 (472)
Q Consensus 1 l~~L~~L~L~~~~l~-----~lp~si~~L~~L~~L~L~~c~~l~----~lp-------~~i~~L~~L~~L~Ls~c~~l~~ 64 (472)
|..+.+++|+||.|. .+..-|.+-.+|+..++++-- +. .+| ..+-+++.|++.+||+|-.-..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 456788999999876 345557778888888887631 21 222 2355788999999999876655
Q ss_pred hhh----hhCCCCCCCEEeeeCccCCCCC--------------ccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcc
Q 012027 65 LLE----TVGQVESLEELDISGTAIRCPP--------------SSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRR 126 (472)
Q Consensus 65 lp~----~l~~l~~L~~L~L~~~~i~~lp--------------~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~ 126 (472)
+|+ .|..-+.|.+|.|.+|.+..+. .-+..-+.|+.+....|+.... +..+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng--------s~~~~-- 177 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG--------SKELS-- 177 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC--------cHHHH--
Confidence 554 4556788999999999877432 1122345666666655542110 00000
Q ss_pred cCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC----CCCCCCCCCCEEEcCCCCCccCC-----cccCCCCCcceeec
Q 012027 127 SSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP----SDIGNLHSLKTLYLSKNNFVTLP-----ASINCLFNLEKLKL 197 (472)
Q Consensus 127 ~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp----~~l~~l~~L~~L~Ls~n~~~~lp-----~~i~~l~~L~~L~l 197 (472)
...+..-..|+.+.+..|.+....+- ..+..+.+|+.|||..|-|+..- ..+..-+.|+.|.+
T Consensus 178 --------a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 178 --------AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred --------HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 00011124688888888877422111 12456789999999999887322 22334456888888
Q ss_pred cCcc
Q 012027 198 EDCK 201 (472)
Q Consensus 198 ~~c~ 201 (472)
..|-
T Consensus 250 nDCl 253 (388)
T COG5238 250 NDCL 253 (388)
T ss_pred cchh
Confidence 8884
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.69 E-value=0.0044 Score=34.77 Aligned_cols=21 Identities=38% Similarity=0.562 Sum_probs=14.4
Q ss_pred CCCEEEcCCCCCccCCcccCC
Q 012027 168 SLKTLYLSKNNFVTLPASINC 188 (472)
Q Consensus 168 ~L~~L~Ls~n~~~~lp~~i~~ 188 (472)
+|++|+|++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.65 E-value=0.0061 Score=56.66 Aligned_cols=84 Identities=25% Similarity=0.292 Sum_probs=59.6
Q ss_pred cCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCC--CCchhhhhhhCCCCCCCEEeeeCccCCCCCcc---ccCCC
Q 012027 22 ELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGC--FKFENLLETVGQVESLEELDISGTAIRCPPSS---IFLMK 96 (472)
Q Consensus 22 ~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c--~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~---i~~l~ 96 (472)
..+.+|+.|.+.++. +.++-. +-.|++|++|.++.| .....++-....+++|++|++++|.|+. +++ +..+.
T Consensus 40 d~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhc
Confidence 345666777776654 333322 346889999999998 5555566666677999999999999885 222 45677
Q ss_pred CCcEEEecCCCC
Q 012027 97 NLKTLSFRGCNG 108 (472)
Q Consensus 97 ~L~~L~L~~~~~ 108 (472)
+|..|++.+|..
T Consensus 117 nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 117 NLKSLDLFNCSV 128 (260)
T ss_pred chhhhhcccCCc
Confidence 888899988873
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.0059 Score=57.80 Aligned_cols=175 Identities=22% Similarity=0.173 Sum_probs=103.5
Q ss_pred CccEEEeeCCCCe---eccccccCCcCCcEEEeecCcC---CCccCcccCCCCCCCEEEccCCCCc-hhhhhhhCCCCCC
Q 012027 3 CLRELLLDKTDIK---EMPLSIELLSGLVQLTLKGCKN---LVRLPSNINSLKSLKTLNLLGCFKF-ENLLETVGQVESL 75 (472)
Q Consensus 3 ~L~~L~L~~~~l~---~lp~si~~L~~L~~L~L~~c~~---l~~lp~~i~~L~~L~~L~Ls~c~~l-~~lp~~l~~l~~L 75 (472)
.+++|+|.+|.|+ ++-..+.+|+.|++|||+.|.. +..+| -.+++|++|.|.|...- ...-..+..++.+
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 5688999999887 5556678999999999998752 23444 25779999999885432 2244556778888
Q ss_pred CEEeeeCccCCCCC---ccccCC-CCCcEEEecCCCCCCCC----CCCCCCcchhhhcccCCCCcCC-CCCCCCCCCcCE
Q 012027 76 EELDISGTAIRCPP---SSIFLM-KNLKTLSFRGCNGPPSS----ASCYLPFPINLMRRSSDLGALM-LPSLSGLGSLTK 146 (472)
Q Consensus 76 ~~L~L~~~~i~~lp---~~i~~l-~~L~~L~L~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~-l~~l~~l~~L~~ 146 (472)
++|+++.|....+- .-+... +-+++|.+.+|...... ....++....+.....-+.... ......++.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 99999988655331 111111 23444555444311000 0001121111111111111111 111344566678
Q ss_pred EeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc
Q 012027 147 LDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180 (472)
Q Consensus 147 L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~ 180 (472)
|+|+.+++-+..--+.+..+++|..|.++.+.+.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 8888888855444567888999999999988765
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.35 E-value=0.00056 Score=71.13 Aligned_cols=131 Identities=33% Similarity=0.371 Sum_probs=75.7
Q ss_pred CCCCCEEEccCCCCchh--hhhhhCCCCCCCEEeeeCc-c-CCC----CCccccCCCCCcEEEecCCCCCCCCCCCCCCc
Q 012027 48 LKSLKTLNLLGCFKFEN--LLETVGQVESLEELDISGT-A-IRC----PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPF 119 (472)
Q Consensus 48 L~~L~~L~Ls~c~~l~~--lp~~l~~l~~L~~L~L~~~-~-i~~----lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~ 119 (472)
.+.|+.|.+.+|..+.. +-.....+++|+.|+++++ . +.. .......+.+|+.|+++.|......
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~------- 259 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI------- 259 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch-------
Confidence 67777777777776665 4455667777888887763 1 111 1223445577788888777632210
Q ss_pred chhhhcccCCCCcCCCCCC-CCCCCcCEEeccCCC-CCCCCCCCCCCCCCCCCEEEcCCCCCc---cCCcccCCCCCcce
Q 012027 120 PINLMRRSSDLGALMLPSL-SGLGSLTKLDLSDCG-LGEGAIPSDIGNLHSLKTLYLSKNNFV---TLPASINCLFNLEK 194 (472)
Q Consensus 120 ~~~l~~~~~~~~~~~l~~l-~~l~~L~~L~L~~~~-l~~~~lp~~l~~l~~L~~L~Ls~n~~~---~lp~~i~~l~~L~~ 194 (472)
.+..+ ..+++|+.|.+..|. +++..+-.....+++|++|+|+++... .+......+++|+.
T Consensus 260 --------------~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~ 325 (482)
T KOG1947|consen 260 --------------GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRE 325 (482)
T ss_pred --------------hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhh
Confidence 11111 226678888877775 554444444566777888888877543 23333444555555
Q ss_pred eeccC
Q 012027 195 LKLED 199 (472)
Q Consensus 195 L~l~~ 199 (472)
|.+..
T Consensus 326 l~~~~ 330 (482)
T KOG1947|consen 326 LKLLS 330 (482)
T ss_pred hhhhh
Confidence 44433
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.08 E-value=0.0035 Score=58.76 Aligned_cols=79 Identities=22% Similarity=0.209 Sum_probs=44.6
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh--hhhCCCCCCCEEee
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL--ETVGQVESLEELDI 80 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L~L 80 (472)
+.++|+..||.|..|.- ...++.|++|.|+=|+ +.++.+ +..+++|++|.|..|. +..+. ..+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHH-HHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 45566666666665532 4556666777766654 444443 4556666666666543 23332 23556666666666
Q ss_pred eCccC
Q 012027 81 SGTAI 85 (472)
Q Consensus 81 ~~~~i 85 (472)
..|..
T Consensus 96 ~ENPC 100 (388)
T KOG2123|consen 96 DENPC 100 (388)
T ss_pred ccCCc
Confidence 65543
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.07 E-value=0.034 Score=28.97 Aligned_cols=16 Identities=50% Similarity=0.781 Sum_probs=6.6
Q ss_pred CCCEEEcCCCCCccCC
Q 012027 168 SLKTLYLSKNNFVTLP 183 (472)
Q Consensus 168 ~L~~L~Ls~n~~~~lp 183 (472)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.89 E-value=0.0053 Score=57.56 Aligned_cols=77 Identities=23% Similarity=0.215 Sum_probs=58.5
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc--ccCCCCCCCEEEccCCCCchhhhh-----hhCCCC
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS--NINSLKSLKTLNLLGCFKFENLLE-----TVGQVE 73 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~--~i~~L~~L~~L~Ls~c~~l~~lp~-----~l~~l~ 73 (472)
|+.|++|.|+-|.|+.+-+ +..+++|+.|.|..|. +..+.. .+.+|++|++|-|..|...+.-+. .+.-++
T Consensus 40 Mp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred cccceeEEeeccccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 7899999999999999876 9999999999999865 555543 367899999999988765544322 244456
Q ss_pred CCCEEe
Q 012027 74 SLEELD 79 (472)
Q Consensus 74 ~L~~L~ 79 (472)
+|+.||
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 666664
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.29 E-value=0.051 Score=28.29 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=6.7
Q ss_pred CccEEEeeCCCCeecc
Q 012027 3 CLRELLLDKTDIKEMP 18 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp 18 (472)
+|+.|+|++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.88 E-value=0.91 Score=37.64 Aligned_cols=56 Identities=11% Similarity=0.272 Sum_probs=20.1
Q ss_pred cCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEeeeCccCCCCCcc-ccCCCCCcEEEe
Q 012027 45 INSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDISGTAIRCPPSS-IFLMKNLKTLSF 103 (472)
Q Consensus 45 i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L 103 (472)
+.+.++|+.+.+.. .+..++ ..+.++++|+.+.+..+ +..++.. +.++++|+.+.+
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 44455566666553 233333 23444555555555543 3333321 233334444444
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.85 E-value=0.26 Score=28.59 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=16.3
Q ss_pred CCCCCEEEcCCCCCccCCccc
Q 012027 166 LHSLKTLYLSKNNFVTLPASI 186 (472)
Q Consensus 166 l~~L~~L~Ls~n~~~~lp~~i 186 (472)
+++|+.|+|++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888654
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.85 E-value=0.26 Score=28.59 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=16.3
Q ss_pred CCCCCEEEcCCCCCccCCccc
Q 012027 166 LHSLKTLYLSKNNFVTLPASI 186 (472)
Q Consensus 166 l~~L~~L~Ls~n~~~~lp~~i 186 (472)
+++|+.|+|++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888654
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.78 E-value=0.99 Score=37.39 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=40.8
Q ss_pred CccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEe
Q 012027 3 CLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELD 79 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~ 79 (472)
+|+.+.+.. .++.++.. +..+++|+.+.+.+. +..++. .+..+++|+.+.+.+ .+..++ ..+..+++|+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccccccccc
Confidence 556666653 45555443 566666777776552 555543 344555667777654 233333 2344466677776
Q ss_pred eeCccCCCCCc-cccCCCCCcEEEecC
Q 012027 80 ISGTAIRCPPS-SIFLMKNLKTLSFRG 105 (472)
Q Consensus 80 L~~~~i~~lp~-~i~~l~~L~~L~L~~ 105 (472)
+..+ +..++. .+.+. .|+.+.+..
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC
Confidence 6553 443332 23333 666665543
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.88 E-value=0.27 Score=28.51 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=14.5
Q ss_pred CCCccEEEeeCCCCeecccc
Q 012027 1 MECLRELLLDKTDIKEMPLS 20 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~s 20 (472)
|++|+.|+|.+|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46777777777777777754
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.88 E-value=0.27 Score=28.51 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=14.5
Q ss_pred CCCccEEEeeCCCCeecccc
Q 012027 1 MECLRELLLDKTDIKEMPLS 20 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~s 20 (472)
|++|+.|+|.+|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46777777777777777754
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.60 E-value=0.027 Score=51.64 Aligned_cols=92 Identities=20% Similarity=0.176 Sum_probs=76.2
Q ss_pred Ceeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccc
Q 012027 14 IKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSI 92 (472)
Q Consensus 14 l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i 92 (472)
++++|- .|......+.||++.+. +..+-..++.++.|..|+++.+ .+..+|+..++...++.+++..|....+|.+.
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccc
Confidence 345552 26778889999999866 6677777778889999999974 46778999999999999999999999999999
Q ss_pred cCCCCCcEEEecCCC
Q 012027 93 FLMKNLKTLSFRGCN 107 (472)
Q Consensus 93 ~~l~~L~~L~L~~~~ 107 (472)
+.++.++++++-++.
T Consensus 108 ~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTE 122 (326)
T ss_pred cccCCcchhhhccCc
Confidence 999999999988765
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.29 E-value=0.35 Score=43.59 Aligned_cols=60 Identities=35% Similarity=0.596 Sum_probs=25.6
Q ss_pred CCCCCCCEEEccCCCCchhh-hhhhC-CCCCCCEEeeeCc-cCCCC-CccccCCCCCcEEEecC
Q 012027 46 NSLKSLKTLNLLGCFKFENL-LETVG-QVESLEELDISGT-AIRCP-PSSIFLMKNLKTLSFRG 105 (472)
Q Consensus 46 ~~L~~L~~L~Ls~c~~l~~l-p~~l~-~l~~L~~L~L~~~-~i~~l-p~~i~~l~~L~~L~L~~ 105 (472)
.++++++.|.+.+|..+... -+.++ -.++|+.|++++| .|++- -..+.++++|+.|.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 34444555555555444321 01111 1245555555544 33321 22344555555555544
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.16 E-value=1.7 Score=25.37 Aligned_cols=18 Identities=44% Similarity=0.652 Sum_probs=13.7
Q ss_pred CCCCEEEcCCCCCccCCc
Q 012027 167 HSLKTLYLSKNNFVTLPA 184 (472)
Q Consensus 167 ~~L~~L~Ls~n~~~~lp~ 184 (472)
.+|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357788888888888775
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=76.40 E-value=0.014 Score=60.55 Aligned_cols=180 Identities=27% Similarity=0.307 Sum_probs=86.9
Q ss_pred ccEEEeeCCCCe-----eccccccCCcCCcEEEeecCcCCCc----cCcccCCC-CCCCEEEccCCCCch----hhhhhh
Q 012027 4 LRELLLDKTDIK-----EMPLSIELLSGLVQLTLKGCKNLVR----LPSNINSL-KSLKTLNLLGCFKFE----NLLETV 69 (472)
Q Consensus 4 L~~L~L~~~~l~-----~lp~si~~L~~L~~L~L~~c~~l~~----lp~~i~~L-~~L~~L~Ls~c~~l~----~lp~~l 69 (472)
+..|.|.+|.+. .+-..+.....|..|++++|..... +-..+... ..|++|.+..|.... .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 445556665544 2333455666777777777652210 11112222 456666666664432 355566
Q ss_pred CCCCCCCEEeeeCccCCC-----CCcccc----CCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCC
Q 012027 70 GQVESLEELDISGTAIRC-----PPSSIF----LMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSG 140 (472)
Q Consensus 70 ~~l~~L~~L~L~~~~i~~-----lp~~i~----~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~ 140 (472)
.....|+.++++.|.+.. ++..+. ...+++.|.+..|........ .+ ...+..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~-------~l-----------~~~l~~ 230 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA-------LL-----------DEVLAS 230 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH-------HH-----------HHHHhc
Confidence 666677777777776541 222222 355666666666653211000 00 000122
Q ss_pred CCC-cCEEeccCCCCCCC---CCCCCCCCC-CCCCEEEcCCCCCc-----cCCcccCCCCCcceeeccCcc
Q 012027 141 LGS-LTKLDLSDCGLGEG---AIPSDIGNL-HSLKTLYLSKNNFV-----TLPASINCLFNLEKLKLEDCK 201 (472)
Q Consensus 141 l~~-L~~L~L~~~~l~~~---~lp~~l~~l-~~L~~L~Ls~n~~~-----~lp~~i~~l~~L~~L~l~~c~ 201 (472)
.++ +..|++..|.+.+. .+...+..+ ..++.++++.|.++ .+...+..++.++.|.+..++
T Consensus 231 ~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 231 GESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred cchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 222 44466666555321 011223333 45566666666665 344445555666666666554
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=74.86 E-value=0.099 Score=48.05 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=66.6
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
....||++.+.+..+-..++.++.|..|+++.+. +.-+|...+.+..++.+++.. ...+..|.+.+..+.++++++.+
T Consensus 43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhhcc
Confidence 3467888888887777778888999999998755 777888888888888888877 45778899999999999999988
Q ss_pred ccCC
Q 012027 83 TAIR 86 (472)
Q Consensus 83 ~~i~ 86 (472)
|.+.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 8754
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.71 E-value=0.69 Score=41.76 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=35.1
Q ss_pred CCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccC-CC-CCcccc-CCCCCcEEEecCCCCC
Q 012027 50 SLKTLNLLGCFKFENLLETVGQVESLEELDISGTAI-RC-PPSSIF-LMKNLKTLSFRGCNGP 109 (472)
Q Consensus 50 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i-~~-lp~~i~-~l~~L~~L~L~~~~~~ 109 (472)
.++.++-+++.....=-+.+.++++|+.|.+..+.- .. -...++ -.++|+.|++++|...
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rI 164 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRI 164 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCee
Confidence 467777777665554456666777777777666532 10 011122 3467888888887643
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.38 E-value=4.9 Score=23.45 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=10.9
Q ss_pred CCCccEEEeeCCCCeec
Q 012027 1 MECLRELLLDKTDIKEM 17 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~l 17 (472)
+.+|+.|+|+.|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 45677777777766544
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=62.83 E-value=5.5 Score=22.93 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=8.6
Q ss_pred CCcceeeccCcccc
Q 012027 190 FNLEKLKLEDCKRL 203 (472)
Q Consensus 190 ~~L~~L~l~~c~~L 203 (472)
++|+.|+|++|..+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 55666666666554
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=60.27 E-value=4.8 Score=22.57 Aligned_cols=14 Identities=43% Similarity=0.506 Sum_probs=6.9
Q ss_pred CCCCEEEcCCCCCc
Q 012027 167 HSLKTLYLSKNNFV 180 (472)
Q Consensus 167 ~~L~~L~Ls~n~~~ 180 (472)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666543
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=60.09 E-value=0.06 Score=55.90 Aligned_cols=161 Identities=23% Similarity=0.234 Sum_probs=103.0
Q ss_pred CCccEEEeeCCCCee-----ccccccCC-cCCcEEEeecCcCCC----ccCcccCCCCCCCEEEccCCCCch----hhhh
Q 012027 2 ECLRELLLDKTDIKE-----MPLSIELL-SGLVQLTLKGCKNLV----RLPSNINSLKSLKTLNLLGCFKFE----NLLE 67 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~-----lp~si~~L-~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~Ls~c~~l~----~lp~ 67 (472)
+.|..|++++|++.. +-..+... ..|++|.+..|.... .+...+.....|+.++++.|.... .++.
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 568889999998771 12223333 567778888876332 345556667889999999886542 1334
Q ss_pred hhC----CCCCCCEEeeeCccCCCC-----CccccCCCC-CcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC
Q 012027 68 TVG----QVESLEELDISGTAIRCP-----PSSIFLMKN-LKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS 137 (472)
Q Consensus 68 ~l~----~l~~L~~L~L~~~~i~~l-----p~~i~~l~~-L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 137 (472)
.+. ...++++|++.++.++.. -..+...+. +..|++..|..... ......|.
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~------------------g~~~L~~~ 256 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV------------------GVEKLLPC 256 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH------------------HHHHHHHH
Confidence 444 478899999999887721 222334444 66677777653221 00001222
Q ss_pred CCCC-CCcCEEeccCCCCCCCC---CCCCCCCCCCCCEEEcCCCCCc
Q 012027 138 LSGL-GSLTKLDLSDCGLGEGA---IPSDIGNLHSLKTLYLSKNNFV 180 (472)
Q Consensus 138 l~~l-~~L~~L~L~~~~l~~~~---lp~~l~~l~~L~~L~Ls~n~~~ 180 (472)
+..+ ..++.++++.|.+.+.. +...+..++.++.|.++.|.+.
T Consensus 257 l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 257 LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 4445 67899999999886432 3445677789999999999776
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=47.83 E-value=16 Score=21.54 Aligned_cols=14 Identities=43% Similarity=0.458 Sum_probs=10.0
Q ss_pred CCCCEEEcCCCCCc
Q 012027 167 HSLKTLYLSKNNFV 180 (472)
Q Consensus 167 ~~L~~L~Ls~n~~~ 180 (472)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777777777764
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.04 E-value=24 Score=36.87 Aligned_cols=63 Identities=24% Similarity=0.248 Sum_probs=30.6
Q ss_pred CCcCCcEEEeecCcCCCccC---cccCCCCCCCEEEccCCCCchhhhhhhCCC--CCCCEEeeeCccCC
Q 012027 23 LLSGLVQLTLKGCKNLVRLP---SNINSLKSLKTLNLLGCFKFENLLETVGQV--ESLEELDISGTAIR 86 (472)
Q Consensus 23 ~L~~L~~L~L~~c~~l~~lp---~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l--~~L~~L~L~~~~i~ 86 (472)
+.+.+..++|++|+ +..+. +--...++|++|+|++|......-..+.++ ..|++|-+.||.+.
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 44555566666654 33222 111234567777777762222222223222 23666777777665
No 91
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=28.69 E-value=15 Score=23.74 Aligned_cols=13 Identities=31% Similarity=0.841 Sum_probs=11.0
Q ss_pred CCCCCCCCccccC
Q 012027 459 YDEEPQPNRFRQL 471 (472)
Q Consensus 459 ~~~~~~~~~~~~~ 471 (472)
.++|||..|-|+|
T Consensus 10 ~~~ePH~~RRk~I 22 (39)
T PF08557_consen 10 YTDEPHASRRKEI 22 (39)
T ss_pred CCCCccHHHHHHH
Confidence 6889999998875
No 92
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=20.52 E-value=58 Score=17.74 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=10.5
Q ss_pred CccEEEeeCCCCeeccc
Q 012027 3 CLRELLLDKTDIKEMPL 19 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~ 19 (472)
+|.+|++.+++++++..
T Consensus 1 ~LVeL~m~~S~lekLW~ 17 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWE 17 (20)
T ss_pred CcEEEECCCCChHHhcC
Confidence 35666777666666554
Done!