Query 012027
Match_columns 472
No_of_seqs 408 out of 3432
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 20:10:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 8.3E-24 2.8E-28 208.3 14.6 202 2-231 81-297 (328)
2 4fcg_A Uncharacterized protein 99.9 1.3E-22 4.6E-27 199.7 18.4 184 1-209 103-296 (328)
3 1ogq_A PGIP-2, polygalacturona 99.9 5.3E-22 1.8E-26 194.1 9.8 219 2-222 50-279 (313)
4 1ogq_A PGIP-2, polygalacturona 99.8 3.1E-21 1.1E-25 188.6 12.5 206 1-209 75-287 (313)
5 3rgz_A Protein brassinosteroid 99.8 1E-20 3.6E-25 207.0 16.1 225 3-228 443-721 (768)
6 4ecn_A Leucine-rich repeat pro 99.8 2.3E-20 7.8E-25 204.8 17.1 195 1-221 447-683 (876)
7 2z66_A Variable lymphocyte rec 99.8 3.3E-20 1.1E-24 180.5 16.3 217 2-221 28-258 (306)
8 4eco_A Uncharacterized protein 99.8 1.2E-20 4E-25 202.2 12.4 217 1-222 205-468 (636)
9 1xku_A Decorin; proteoglycan, 99.8 2.6E-19 8.9E-24 176.0 20.9 212 2-221 52-273 (330)
10 1ozn_A Reticulon 4 receptor; N 99.8 2E-19 7E-24 173.1 19.2 195 2-221 32-235 (285)
11 3o6n_A APL1; leucine-rich repe 99.8 1.3E-19 4.3E-24 182.5 17.8 221 1-228 68-334 (390)
12 3rgz_A Protein brassinosteroid 99.8 1.2E-19 4.1E-24 198.6 18.6 220 2-222 394-691 (768)
13 3oja_B Anopheles plasmodium-re 99.8 1.2E-19 4E-24 193.1 17.7 220 1-227 74-339 (597)
14 3zyi_A Leucine-rich repeat-con 99.8 3.6E-19 1.2E-23 182.8 20.0 176 2-201 75-253 (452)
15 3o6n_A APL1; leucine-rich repe 99.8 2E-19 6.7E-24 181.1 17.2 223 1-229 44-312 (390)
16 4eco_A Uncharacterized protein 99.8 1E-19 3.5E-24 194.9 15.6 220 1-229 329-583 (636)
17 2ft3_A Biglycan; proteoglycan, 99.8 8.4E-19 2.9E-23 172.6 19.9 104 2-108 54-159 (332)
18 2xwt_C Thyrotropin receptor; s 99.8 5.8E-19 2E-23 165.4 17.2 198 2-224 31-239 (239)
19 3zyj_A Leucine-rich repeat-con 99.8 1.1E-18 3.8E-23 178.6 20.6 174 2-201 64-242 (440)
20 3v47_A TOLL-like receptor 5B a 99.8 1.2E-18 4E-23 178.8 20.5 106 2-107 54-165 (455)
21 1h6u_A Internalin H; cell adhe 99.8 4E-19 1.4E-23 173.2 16.0 186 1-221 40-227 (308)
22 3rfs_A Internalin B, repeat mo 99.8 1.6E-18 5.3E-23 165.9 19.7 176 1-203 40-218 (272)
23 4fmz_A Internalin; leucine ric 99.8 1.1E-18 3.8E-23 172.5 18.6 214 1-227 65-280 (347)
24 3v47_A TOLL-like receptor 5B a 99.8 8.5E-19 2.9E-23 179.8 18.0 227 1-229 78-388 (455)
25 3t6q_A CD180 antigen; protein- 99.8 1.3E-18 4.4E-23 185.1 19.5 218 3-221 255-486 (606)
26 2z80_A TOLL-like receptor 2, v 99.8 1.7E-19 5.8E-24 179.2 11.6 176 2-201 52-233 (353)
27 2z62_A TOLL-like receptor 4, v 99.8 7E-19 2.4E-23 168.5 15.2 180 3-207 29-216 (276)
28 3vq2_A TLR4, TOLL-like recepto 99.8 5.5E-19 1.9E-23 188.0 15.4 215 1-221 327-555 (606)
29 4fmz_A Internalin; leucine ric 99.8 4.6E-18 1.6E-22 168.1 20.8 213 1-227 43-258 (347)
30 1p9a_G Platelet glycoprotein I 99.8 4.6E-18 1.6E-22 164.2 20.0 193 1-221 9-205 (290)
31 2id5_A Lingo-1, leucine rich r 99.8 2.4E-18 8.2E-23 177.8 19.1 199 1-201 55-259 (477)
32 1ozn_A Reticulon 4 receptor; N 99.8 6.4E-18 2.2E-22 162.5 20.3 197 5-228 14-217 (285)
33 2id5_A Lingo-1, leucine rich r 99.8 4.1E-18 1.4E-22 176.0 19.8 218 2-222 32-259 (477)
34 3oja_B Anopheles plasmodium-re 99.8 1.5E-18 5.1E-23 184.5 16.9 223 1-229 50-318 (597)
35 1xku_A Decorin; proteoglycan, 99.8 4.1E-18 1.4E-22 167.5 18.5 217 3-229 32-257 (330)
36 3zyj_A Leucine-rich repeat-con 99.8 6.1E-18 2.1E-22 173.0 20.1 194 1-221 87-289 (440)
37 2ft3_A Biglycan; proteoglycan, 99.8 6.8E-18 2.3E-22 166.1 19.6 189 3-201 34-228 (332)
38 4ecn_A Leucine-rich repeat pro 99.8 5.1E-18 1.8E-22 186.2 20.6 104 2-108 548-656 (876)
39 2z7x_B TOLL-like receptor 1, v 99.8 3.8E-18 1.3E-22 178.1 18.7 103 2-107 21-126 (520)
40 3bz5_A Internalin-J, INLJ; leu 99.8 1.4E-17 4.7E-22 171.3 22.4 182 1-200 41-222 (457)
41 3t6q_A CD180 antigen; protein- 99.8 2.4E-18 8.2E-23 183.1 17.2 107 2-108 33-141 (606)
42 3bz5_A Internalin-J, INLJ; leu 99.8 3.7E-18 1.3E-22 175.5 17.7 165 1-183 84-249 (457)
43 2z66_A Variable lymphocyte rec 99.8 2.2E-18 7.6E-23 167.4 15.2 199 1-202 51-260 (306)
44 2o6q_A Variable lymphocyte rec 99.8 2.6E-17 8.9E-22 157.1 21.5 190 3-221 17-215 (270)
45 3zyi_A Leucine-rich repeat-con 99.8 6.2E-18 2.1E-22 173.6 18.4 194 1-221 98-300 (452)
46 3vq2_A TLR4, TOLL-like recepto 99.8 2E-18 7E-23 183.6 15.3 222 2-228 285-537 (606)
47 1wwl_A Monocyte differentiatio 99.8 2.7E-18 9.1E-23 167.6 14.6 195 1-221 94-306 (312)
48 3m19_A Variable lymphocyte rec 99.8 1.5E-17 5.2E-22 157.0 19.0 174 3-202 15-191 (251)
49 1wwl_A Monocyte differentiatio 99.8 3.9E-18 1.3E-22 166.4 15.0 202 4-228 65-290 (312)
50 2z7x_B TOLL-like receptor 1, v 99.8 6.4E-18 2.2E-22 176.4 17.1 217 1-223 44-411 (520)
51 1h6u_A Internalin H; cell adhe 99.8 1.1E-17 3.6E-22 163.1 16.4 168 1-202 62-229 (308)
52 2z63_A TOLL-like receptor 4, v 99.8 5.1E-18 1.8E-22 178.9 14.9 193 2-221 282-504 (570)
53 3rfs_A Internalin B, repeat mo 99.8 1.7E-17 5.8E-22 158.6 16.9 178 1-210 62-242 (272)
54 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3E-17 1E-21 173.2 20.2 215 2-222 52-439 (562)
55 3g06_A SSPH2 (leucine-rich rep 99.7 1.1E-16 3.9E-21 169.8 24.1 203 4-229 42-278 (622)
56 2z81_A CD282 antigen, TOLL-lik 99.7 9.8E-18 3.4E-22 176.1 14.8 198 2-221 26-233 (549)
57 4glp_A Monocyte differentiatio 99.7 3.7E-18 1.3E-22 166.5 10.6 211 4-220 66-303 (310)
58 1jl5_A Outer protein YOPM; leu 99.7 5.7E-18 1.9E-22 173.9 12.5 208 2-228 11-231 (454)
59 1h6t_A Internalin B; cell adhe 99.7 1.6E-17 5.6E-22 160.5 15.0 166 2-201 46-211 (291)
60 2z62_A TOLL-like receptor 4, v 99.7 1.2E-17 4E-22 159.9 13.9 178 1-202 51-236 (276)
61 3j0a_A TOLL-like receptor 5; m 99.7 5.4E-17 1.8E-21 179.4 21.1 82 138-221 286-372 (844)
62 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.3E-17 4.6E-22 175.9 15.5 102 4-110 33-135 (562)
63 1o6v_A Internalin A; bacterial 99.7 5.7E-17 2E-21 167.1 18.3 84 1-89 67-150 (466)
64 3o53_A Protein LRIM1, AGAP0063 99.7 6E-18 2.1E-22 165.5 9.8 208 2-222 34-248 (317)
65 1ziw_A TOLL-like receptor 3; i 99.7 1.2E-16 4.1E-21 172.3 20.3 195 26-221 382-594 (680)
66 1ziw_A TOLL-like receptor 3; i 99.7 6.5E-17 2.2E-21 174.4 17.9 197 2-200 49-306 (680)
67 4ay9_X Follicle-stimulating ho 99.7 1.7E-16 5.9E-21 157.3 19.0 203 3-229 31-241 (350)
68 2xwt_C Thyrotropin receptor; s 99.7 6.4E-17 2.2E-21 151.4 14.7 173 1-202 54-238 (239)
69 1jl5_A Outer protein YOPM; leu 99.7 3.2E-16 1.1E-20 160.9 21.2 197 2-221 91-287 (454)
70 2z81_A CD282 antigen, TOLL-lik 99.7 8.4E-17 2.9E-21 169.0 16.7 189 2-222 310-508 (549)
71 3j0a_A TOLL-like receptor 5; m 99.7 1.4E-16 4.9E-21 176.0 18.5 220 2-222 24-325 (844)
72 1o6v_A Internalin A; bacterial 99.7 1.8E-16 6.3E-21 163.3 17.9 208 1-222 155-364 (466)
73 4ezg_A Putative uncharacterize 99.7 3.9E-17 1.3E-21 148.3 11.3 151 21-201 40-192 (197)
74 3o53_A Protein LRIM1, AGAP0063 99.7 2.4E-17 8E-22 161.3 10.5 190 1-203 57-250 (317)
75 3oja_A Leucine-rich immune mol 99.7 2.4E-17 8.3E-22 170.8 11.1 208 2-222 34-248 (487)
76 1p9a_G Platelet glycoprotein I 99.7 6.9E-16 2.4E-20 148.9 20.2 180 20-230 5-190 (290)
77 2z80_A TOLL-like receptor 2, v 99.7 6.2E-17 2.1E-21 160.6 13.2 193 4-222 33-233 (353)
78 1m9s_A Internalin B; cell inva 99.7 1E-16 3.5E-21 169.9 14.9 169 1-203 42-210 (605)
79 2z63_A TOLL-like receptor 4, v 99.7 1.5E-16 5.1E-21 167.7 15.6 104 2-107 52-160 (570)
80 1h6t_A Internalin B; cell adhe 99.7 4.3E-17 1.5E-21 157.5 9.6 178 9-221 31-210 (291)
81 4glp_A Monocyte differentiatio 99.7 9.5E-17 3.2E-21 156.4 11.9 196 2-202 91-306 (310)
82 2o6q_A Variable lymphocyte rec 99.7 1.3E-15 4.3E-20 145.4 19.4 177 2-202 37-217 (270)
83 3oja_A Leucine-rich immune mol 99.7 5.5E-17 1.9E-21 168.2 10.5 190 1-203 57-250 (487)
84 2ast_B S-phase kinase-associat 99.7 2.6E-18 8.8E-23 169.1 0.3 198 2-221 70-282 (336)
85 1xeu_A Internalin C; cellular 99.7 4.1E-17 1.4E-21 155.3 8.4 165 3-202 20-184 (263)
86 3m19_A Variable lymphocyte rec 99.7 8.6E-16 2.9E-20 144.9 17.4 157 2-182 35-194 (251)
87 3cvr_A Invasion plasmid antige 99.7 7.3E-16 2.5E-20 161.8 16.7 176 3-202 60-242 (571)
88 2ast_B S-phase kinase-associat 99.7 3.6E-18 1.2E-22 168.1 -1.8 179 1-200 92-282 (336)
89 1m9s_A Internalin B; cell inva 99.7 9.9E-17 3.4E-21 170.0 9.1 182 6-222 25-208 (605)
90 4ay9_X Follicle-stimulating ho 99.7 2.3E-15 8E-20 149.1 18.1 198 5-229 12-219 (350)
91 4ezg_A Putative uncharacterize 99.7 3.3E-16 1.1E-20 142.2 10.4 150 2-180 44-194 (197)
92 3g06_A SSPH2 (leucine-rich rep 99.6 4.4E-15 1.5E-19 157.6 20.4 195 2-222 81-295 (622)
93 2o6s_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 136.5 16.4 172 5-209 10-184 (208)
94 2v9t_B SLIT homolog 2 protein 99.6 4.7E-15 1.6E-19 137.1 16.0 100 5-107 14-115 (220)
95 1dce_A Protein (RAB geranylger 99.6 5.8E-18 2E-22 178.3 -4.6 173 2-203 349-546 (567)
96 2o6s_A Variable lymphocyte rec 99.6 2.9E-15 9.8E-20 137.0 12.3 158 2-191 28-190 (208)
97 3e6j_A Variable lymphocyte rec 99.6 9E-15 3.1E-19 136.0 15.7 147 27-201 21-170 (229)
98 4g8a_A TOLL-like receptor 4; l 99.6 2.3E-15 7.7E-20 160.3 12.7 103 3-107 53-159 (635)
99 2v70_A SLIT-2, SLIT homolog 2 99.6 1.2E-14 4.3E-19 134.2 15.7 100 5-107 14-116 (220)
100 2xot_A Amphoterin-induced prot 99.6 5.3E-15 1.8E-19 147.2 13.0 169 5-200 21-199 (361)
101 1xeu_A Internalin C; cellular 99.6 4.1E-15 1.4E-19 141.3 11.6 151 1-185 40-190 (263)
102 2ca6_A RAN GTPase-activating p 99.6 9.4E-17 3.2E-21 161.3 -1.0 198 2-221 32-284 (386)
103 2ca6_A RAN GTPase-activating p 99.6 2.6E-16 8.7E-21 158.1 1.2 203 1-221 59-313 (386)
104 4g8a_A TOLL-like receptor 4; l 99.6 2.3E-14 7.7E-19 152.5 16.2 176 22-221 394-577 (635)
105 2v70_A SLIT-2, SLIT homolog 2 99.6 3.9E-14 1.3E-18 130.9 14.9 147 28-201 14-164 (220)
106 2ell_A Acidic leucine-rich nuc 99.5 1.3E-14 4.5E-19 127.9 10.1 84 22-107 21-106 (168)
107 4b8c_D Glucose-repressible alc 99.5 5.6E-15 1.9E-19 160.1 4.8 190 3-221 174-369 (727)
108 3cvr_A Invasion plasmid antige 99.5 2.2E-13 7.7E-18 142.9 16.5 158 26-229 60-224 (571)
109 2v9t_B SLIT homolog 2 protein 99.5 3.1E-13 1.1E-17 124.8 14.2 105 2-107 32-139 (220)
110 3e6j_A Variable lymphocyte rec 99.5 4.1E-13 1.4E-17 124.7 14.2 149 5-181 22-173 (229)
111 3goz_A Leucine-rich repeat-con 99.5 1.1E-14 3.7E-19 145.0 3.5 200 3-222 23-264 (362)
112 2ell_A Acidic leucine-rich nuc 99.5 1.2E-13 4E-18 121.8 9.4 129 47-201 22-158 (168)
113 1dce_A Protein (RAB geranylger 99.5 2.8E-15 9.5E-20 157.8 -2.5 154 16-197 400-567 (567)
114 2xot_A Amphoterin-induced prot 99.4 8.5E-13 2.9E-17 131.2 14.4 153 28-207 21-179 (361)
115 4b8c_D Glucose-repressible alc 99.4 1.3E-14 4.4E-19 157.4 0.9 156 12-200 211-369 (727)
116 1w8a_A SLIT protein; signaling 99.4 9.2E-13 3.1E-17 118.9 12.1 126 28-180 11-139 (192)
117 2je0_A Acidic leucine-rich nuc 99.4 1.2E-13 4.2E-18 119.1 5.7 104 2-107 17-124 (149)
118 2je0_A Acidic leucine-rich nuc 99.4 1.1E-13 3.6E-18 119.5 5.3 59 141-199 87-149 (149)
119 1z7x_W Ribonuclease inhibitor; 99.4 2.4E-15 8.3E-20 154.2 -6.1 218 2-221 3-266 (461)
120 2wfh_A SLIT homolog 2 protein 99.4 7.8E-12 2.7E-16 112.9 14.0 124 52-201 13-137 (193)
121 1z7x_W Ribonuclease inhibitor; 99.4 6.6E-14 2.3E-18 143.5 0.1 204 1-221 169-408 (461)
122 3goz_A Leucine-rich repeat-con 99.3 2.7E-13 9.1E-18 134.9 3.9 196 6-221 2-235 (362)
123 1w8a_A SLIT protein; signaling 99.3 6.3E-12 2.2E-16 113.3 12.5 126 51-202 10-138 (192)
124 1a9n_A U2A', U2A'; complex (nu 99.3 1.6E-12 5.4E-17 115.5 7.4 61 139-201 85-151 (176)
125 3ogk_B Coronatine-insensitive 99.3 6.4E-13 2.2E-17 140.6 4.5 218 1-220 111-351 (592)
126 1a9n_A U2A', U2A'; complex (nu 99.3 2.6E-12 8.9E-17 114.1 7.2 102 2-107 19-124 (176)
127 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4E-16 111.7 11.4 105 2-107 31-137 (193)
128 2o6r_A Variable lymphocyte rec 99.3 3.7E-11 1.3E-15 106.6 14.3 77 28-107 10-87 (177)
129 2o6r_A Variable lymphocyte rec 99.3 6.3E-11 2.2E-15 105.1 14.7 125 50-201 8-135 (177)
130 3ogk_B Coronatine-insensitive 99.3 1E-12 3.5E-17 139.0 2.1 217 1-220 72-327 (592)
131 2p1m_B Transport inhibitor res 99.2 3E-13 1E-17 143.1 -3.2 107 1-107 65-195 (594)
132 1ds9_A Outer arm dynein; leuci 99.2 2.6E-14 9E-19 129.7 -11.5 62 44-107 43-104 (198)
133 1ds9_A Outer arm dynein; leuci 99.2 1.1E-13 3.7E-18 125.6 -8.7 101 3-107 24-126 (198)
134 3g39_A Variable lymphocyte rec 99.1 1.7E-10 5.8E-15 101.8 10.5 100 4-107 11-113 (170)
135 2r9u_A Variable lymphocyte rec 99.1 1.8E-10 6.3E-15 102.0 10.6 100 5-107 15-116 (174)
136 2p1m_B Transport inhibitor res 99.1 3.5E-12 1.2E-16 134.9 -1.8 106 1-106 104-221 (594)
137 3sb4_A Hypothetical leucine ri 99.1 3.1E-10 1E-14 111.1 11.1 172 1-200 48-307 (329)
138 3g39_A Variable lymphocyte rec 99.0 1.9E-09 6.6E-14 94.9 12.8 54 51-107 11-65 (170)
139 2r9u_A Variable lymphocyte rec 99.0 1.9E-09 6.6E-14 95.4 12.9 53 52-107 15-68 (174)
140 2ifg_A High affinity nerve gro 98.9 2.4E-09 8.2E-14 105.4 10.0 101 6-107 12-114 (347)
141 2ifg_A High affinity nerve gro 98.7 2.3E-08 7.9E-13 98.3 9.4 103 52-181 11-117 (347)
142 3sb4_A Hypothetical leucine ri 98.7 1.8E-08 6.3E-13 98.4 8.6 63 141-208 225-290 (329)
143 3un9_A NLR family member X1; l 98.7 3.5E-10 1.2E-14 112.7 -5.1 106 2-107 72-194 (372)
144 2ra8_A Uncharacterized protein 98.5 7.6E-08 2.6E-12 95.2 6.7 167 16-201 130-318 (362)
145 2ra8_A Uncharacterized protein 98.5 1.6E-08 5.6E-13 100.0 1.7 174 24-221 106-317 (362)
146 4fdw_A Leucine rich hypothetic 98.5 2.9E-06 1E-10 85.1 18.1 168 3-199 158-332 (401)
147 4fdw_A Leucine rich hypothetic 98.5 1.5E-06 5E-11 87.3 15.7 171 3-208 136-316 (401)
148 3un9_A NLR family member X1; l 98.3 2.1E-07 7.3E-12 92.4 3.6 106 2-107 101-222 (372)
149 1io0_A Tropomodulin; LRR prote 98.0 3E-06 1E-10 75.4 3.2 106 2-107 36-162 (185)
150 4fs7_A Uncharacterized protein 97.9 0.00015 5E-09 72.3 15.0 96 138-249 293-390 (394)
151 3e4g_A ATP synthase subunit S, 97.8 2.1E-05 7.2E-10 68.9 5.8 85 25-110 61-153 (176)
152 3e4g_A ATP synthase subunit S, 97.8 2.4E-05 8.3E-10 68.5 5.6 84 3-86 62-153 (176)
153 3rw6_A Nuclear RNA export fact 97.7 2.6E-05 8.7E-10 73.4 5.1 94 7-102 148-257 (267)
154 1io0_A Tropomodulin; LRR prote 97.6 1.7E-06 5.7E-11 77.1 -4.1 42 45-86 32-78 (185)
155 4fs7_A Uncharacterized protein 97.5 0.0023 7.8E-08 63.6 16.4 15 163-177 249-263 (394)
156 4gt6_A Cell surface protein; l 97.4 0.0036 1.2E-07 62.2 16.7 98 138-249 261-359 (394)
157 3rw6_A Nuclear RNA export fact 97.2 0.00018 6.3E-09 67.5 3.7 67 140-207 168-237 (267)
158 4gt6_A Cell surface protein; l 96.7 0.032 1.1E-06 55.1 15.3 80 138-230 284-365 (394)
159 4h09_A Hypothetical leucine ri 96.3 0.14 4.8E-06 50.0 17.2 81 138-230 259-341 (379)
160 4h09_A Hypothetical leucine ri 96.1 0.059 2E-06 52.8 13.0 57 138-197 282-340 (379)
161 3rfe_A Platelet glycoprotein I 95.0 0.047 1.6E-06 44.9 6.4 55 145-201 11-66 (130)
162 1pgv_A TMD-1, tropomodulin TMD 93.7 0.042 1.4E-06 48.7 3.6 41 46-86 67-111 (197)
163 1pgv_A TMD-1, tropomodulin TMD 93.4 0.048 1.6E-06 48.3 3.5 80 3-82 42-135 (197)
164 3rfe_A Platelet glycoprotein I 93.3 0.11 3.9E-06 42.6 5.4 52 53-107 12-66 (130)
165 3ukw_C Bimax1 peptide; arm rep 73.9 0.87 3E-05 24.8 0.5 13 457-469 14-26 (28)
166 3ukx_C Bimax2 peptide; arm rep 42.2 12 0.00041 20.4 1.4 13 457-469 14-26 (28)
167 4ayb_P DNA-directed RNA polyme 23.4 30 0.001 22.4 1.1 18 387-414 21-38 (48)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=8.3e-24 Score=208.35 Aligned_cols=202 Identities=24% Similarity=0.357 Sum_probs=170.3
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
++++.|+|+++.++.+|..++.+++|++|+|++|. +..+|..++++++|++|+|++|.. ..+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECC
Confidence 57899999999999999999999999999999987 569999999999999999999864 4889999999999999999
Q ss_pred Ccc-CCCCCccccC---------CCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEecc
Q 012027 82 GTA-IRCPPSSIFL---------MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLS 150 (472)
Q Consensus 82 ~~~-i~~lp~~i~~---------l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~ 150 (472)
+|. +..+|..+.. +++|+.|++++|... .+|. +..+++|++|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------------------------SLPASIANLQNLKSLKIR 214 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------------------------CCCGGGGGCTTCCEEEEE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC------------------------cchHhhcCCCCCCEEEcc
Confidence 965 4578887765 999999999998632 1232 6778889999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCCCccc
Q 012027 151 DCGLGEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCASLVT 226 (472)
Q Consensus 151 ~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~sL~~ 226 (472)
+|.+.. +|..++.+++|++|+|++|++. .+|..+..+++|+.|++++|..+..+|.- .++|+.|++++|..+..
T Consensus 215 ~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 215 NSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp SSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred CCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 998863 7778888899999999998765 77888888999999999999888888752 36788899999888888
Q ss_pred ccccc
Q 012027 227 LLGAL 231 (472)
Q Consensus 227 ~~~~~ 231 (472)
+|...
T Consensus 293 iP~~l 297 (328)
T 4fcg_A 293 LPSLI 297 (328)
T ss_dssp CCGGG
T ss_pred ccHHH
Confidence 87654
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.3e-22 Score=199.70 Aligned_cols=184 Identities=33% Similarity=0.511 Sum_probs=138.7
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCC---------
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQ--------- 71 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~--------- 71 (472)
|++|++|+|++|.++.+|..++.+++|++|+|++|. +..+|..+.++++|++|++++|..++.+|..++.
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 457788888888887788778888888888888875 5577777878888888888887777777776654
Q ss_pred CCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccC
Q 012027 72 VESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSD 151 (472)
Q Consensus 72 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~ 151 (472)
+++|++|++++|.+..+|..++++++|+.|++++|.... ..+.+..+++|++|++++
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-----------------------l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-----------------------LGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-----------------------CCGGGGGCTTCCEEECTT
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-----------------------CchhhccCCCCCEEECcC
Confidence 788888888888888888778888888888888776321 122366677788888888
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCCCC
Q 012027 152 CGLGEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLPQL 209 (472)
Q Consensus 152 ~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp~l 209 (472)
|++. +.+|..++.+++|+.|+|++|++. .+|..+..+++|+.|+|++|..++.+|+.
T Consensus 239 n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 239 CTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred Ccch-hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 7776 567777888888888888887654 77777888888888888888877777653
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=5.3e-22 Score=194.09 Aligned_cols=219 Identities=21% Similarity=0.223 Sum_probs=168.9
Q ss_pred CCccEEEeeCCCCe---eccccccCCcCCcEEEeec-CcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCE
Q 012027 2 ECLRELLLDKTDIK---EMPLSIELLSGLVQLTLKG-CKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEE 77 (472)
Q Consensus 2 ~~L~~L~L~~~~l~---~lp~si~~L~~L~~L~L~~-c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 77 (472)
.++++|+|+++.+. .+|..++.+++|++|+|++ +.....+|..+.++++|++|++++|...+.+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 46889999999988 5888899999999999995 6656688988999999999999998877788999999999999
Q ss_pred EeeeCccCC-CCCccccCCCCCcEEEecCCCCCCCCCC--CCCC-cchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCC
Q 012027 78 LDISGTAIR-CPPSSIFLMKNLKTLSFRGCNGPPSSAS--CYLP-FPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCG 153 (472)
Q Consensus 78 L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~ 153 (472)
|++++|.+. .+|..+..+++|++|++++|......+. ..+. ....+....+.+.+.....+..+. |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999988 7888999999999999999875422222 2222 233344455555443334466666 8888888888
Q ss_pred CCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCC
Q 012027 154 LGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCA 222 (472)
Q Consensus 154 l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~ 222 (472)
+. +..|..++.+++|+.|+|++|.++..+..+..+++|+.|++++|.....+|.. .++|+.|+++++.
T Consensus 209 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 209 LE-GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EE-ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred cc-CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 76 45777788888888888888888865556788888888888888766566642 2577888887774
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=3.1e-21 Score=188.65 Aligned_cols=206 Identities=17% Similarity=0.152 Sum_probs=167.7
Q ss_pred CCCccEEEeeC-CCCe-eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027 1 MECLRELLLDK-TDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL 78 (472)
Q Consensus 1 l~~L~~L~L~~-~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (472)
+++|++|+|++ +.+. .+|..++.+++|++|+|++|.....+|..+.++++|++|++++|.....+|..++.+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 57899999995 8887 788889999999999999988656889889999999999999987776889999999999999
Q ss_pred eeeCccCC-CCCccccCCC-CCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCC
Q 012027 79 DISGTAIR-CPPSSIFLMK-NLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGL 154 (472)
Q Consensus 79 ~L~~~~i~-~lp~~i~~l~-~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l 154 (472)
++++|.+. .+|..++.++ +|+.|++++|......+ ..... ...+....+.+.......+..+++|+.|++++|.+
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 99999998 8899999998 99999999987432222 11222 33344455555544334488899999999999988
Q ss_pred CCCCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCCCC
Q 012027 155 GEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLPQL 209 (472)
Q Consensus 155 ~~~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp~l 209 (472)
. +.+|. +..+++|++|+|++|.++ .+|..+..+++|+.|++++|+....+|..
T Consensus 234 ~-~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 234 A-FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp C-CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred e-eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 6 34444 888999999999999998 88999999999999999999877677764
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=1e-20 Score=206.97 Aligned_cols=225 Identities=21% Similarity=0.217 Sum_probs=136.8
Q ss_pred CccEEEeeCCCCe-eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 3 CLRELLLDKTDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 3 ~L~~L~L~~~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
+|++|+|++|.+. .+|..++.+++|++|++++|.....+|..+.++++|++|++++|...+.+|..++.+++|++|+++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence 3444444444444 334444444444444444444333444444555555555555554444455555555555555555
Q ss_pred CccCC-CCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchh--------------------------------------
Q 012027 82 GTAIR-CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN-------------------------------------- 122 (472)
Q Consensus 82 ~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-------------------------------------- 122 (472)
+|.+. .+|..++.+++|+.|++++|......+...+.....
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 55554 445555555555555555554221111111000000
Q ss_pred ----------hhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCC
Q 012027 123 ----------LMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFN 191 (472)
Q Consensus 123 ----------l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~ 191 (472)
.....+...+...+.+..+++|+.|++++|+++ +.+|..++.+++|+.|+|++|.++ .+|..++.+++
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~ 681 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCccc-ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence 000001122223344777899999999999997 789999999999999999999998 89999999999
Q ss_pred cceeeccCccccccCCCC---CCCccEEEEccCCCccccc
Q 012027 192 LEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCASLVTLL 228 (472)
Q Consensus 192 L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~sL~~~~ 228 (472)
|+.|+|++|+....+|.. .++|+.|+++++.--..+|
T Consensus 682 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 999999999988888864 3578899998875444444
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=2.3e-20 Score=204.81 Aligned_cols=195 Identities=17% Similarity=0.182 Sum_probs=153.2
Q ss_pred CCCccEEEeeCCCCee------------------cccccc--CCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCC
Q 012027 1 MECLRELLLDKTDIKE------------------MPLSIE--LLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~------------------lp~si~--~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~ 60 (472)
|++|++|+|++|.|+. +|+.++ ++++|++|+|++|.....+|..+++|++|++|+|++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5789999999999998 999988 99999999999999899999999999999999999997
Q ss_pred -Cch-hhhhhhCCCC-------CCCEEeeeCccCCCCCc--cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCC
Q 012027 61 -KFE-NLLETVGQVE-------SLEELDISGTAIRCPPS--SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSD 129 (472)
Q Consensus 61 -~l~-~lp~~l~~l~-------~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~ 129 (472)
... .+|..+++++ +|++|++++|.+..+|. .++++++|+.|++++|... .
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~------------------ 587 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-H------------------ 587 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-B------------------
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-c------------------
Confidence 444 6888777665 99999999999999999 9999999999999998743 1
Q ss_pred CCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCC-CCEEEcCCCCCccCCcccCCCCC--cceeeccCccccccC
Q 012027 130 LGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHS-LKTLYLSKNNFVTLPASINCLFN--LEKLKLEDCKRLQSL 206 (472)
Q Consensus 130 ~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~-L~~L~Ls~n~~~~lp~~i~~l~~--L~~L~l~~c~~L~~l 206 (472)
+|.+..+++|+.|++++|.+. .+|..+..+++ |+.|+|++|.++.+|..+..++. |+.|++++|.....+
T Consensus 588 -----lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 588 -----LEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp -----CCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred -----chhhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 334566666777777777664 36666666666 77777777777766666655543 777777776655555
Q ss_pred CCCC--------CCccEEEEccC
Q 012027 207 PQLP--------PNVEKVRVNGC 221 (472)
Q Consensus 207 p~lp--------~~L~~L~~~~c 221 (472)
|.++ ++|+.|++++|
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSS
T ss_pred ccchhhhccccCCCcCEEEccCC
Confidence 5444 25666666554
No 7
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=3.3e-20 Score=180.48 Aligned_cols=217 Identities=23% Similarity=0.274 Sum_probs=136.8
Q ss_pred CCccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCcc---CcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCE
Q 012027 2 ECLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRL---PSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEE 77 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~l---p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 77 (472)
++|++|+|+++.++.+|.. ++.+++|++|+|++|. +..+ |..+..+++|++|++++|. +..+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCE
Confidence 4788889988888888875 5888899999998876 4433 5556678889999998865 4567777888889999
Q ss_pred EeeeCccCCCCCc--cccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCC
Q 012027 78 LDISGTAIRCPPS--SIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDC 152 (472)
Q Consensus 78 L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~ 152 (472)
|++++|.+..++. .+..+++|+.|++++|......+ ...+.....+....+.+.....|. +..+++|+.|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 9999888887764 67888889999988886332111 112222222333333333212222 555666666666666
Q ss_pred CCCCCCCCCCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCC----CCCCCccEEEEccC
Q 012027 153 GLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLP----QLPPNVEKVRVNGC 221 (472)
Q Consensus 153 ~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp----~lp~~L~~L~~~~c 221 (472)
.+. +..|..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|......| .+|++|+.|++.++
T Consensus 186 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 186 QLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CcC-CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 654 2335556666666666666666665543 45556666666666664433222 23345555555443
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=1.2e-20 Score=202.24 Aligned_cols=217 Identities=15% Similarity=0.193 Sum_probs=163.7
Q ss_pred CCCccEEEeeCCCCee------------------cccccc--CCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCC
Q 012027 1 MECLRELLLDKTDIKE------------------MPLSIE--LLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~------------------lp~si~--~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~ 60 (472)
|++|++|+|++|.++. +|..++ ++++|++|+|++|.....+|..++++++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 5789999999999998 999999 99999999999999899999999999999999999998
Q ss_pred -Cch-hhhhhhCCC------CCCCEEeeeCccCCCCCc--cccCCCCCcEEEecCCCCCCCCC-CCCCCcchhhhcccCC
Q 012027 61 -KFE-NLLETVGQV------ESLEELDISGTAIRCPPS--SIFLMKNLKTLSFRGCNGPPSSA-SCYLPFPINLMRRSSD 129 (472)
Q Consensus 61 -~l~-~lp~~l~~l------~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~l~~~~~~ 129 (472)
..+ .+|..++.+ ++|++|++++|.+..+|. .++++++|+.|++++|......+ ...+.....+....+.
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence 555 799998887 999999999999999999 99999999999999997542222 1112222233444444
Q ss_pred CCcCCCCC-CCCCCC-cCEEeccCCCCCCCCCCCCCCCCC--CCCEEEcCCCCCc-cCCcccC-------CCCCcceeec
Q 012027 130 LGALMLPS-LSGLGS-LTKLDLSDCGLGEGAIPSDIGNLH--SLKTLYLSKNNFV-TLPASIN-------CLFNLEKLKL 197 (472)
Q Consensus 130 ~~~~~l~~-l~~l~~-L~~L~L~~~~l~~~~lp~~l~~l~--~L~~L~Ls~n~~~-~lp~~i~-------~l~~L~~L~l 197 (472)
+. .+|. +..+++ |+.|++++|.+. .+|..++.++ +|+.|++++|.+. .+|..+. .+++|+.|++
T Consensus 365 l~--~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 365 IT--EIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp EE--ECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred cc--cccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 44 2333 666777 777777777775 3777666544 7777777777776 4555666 6667777777
Q ss_pred cCccccccCCC----CCCCccEEEEccCC
Q 012027 198 EDCKRLQSLPQ----LPPNVEKVRVNGCA 222 (472)
Q Consensus 198 ~~c~~L~~lp~----lp~~L~~L~~~~c~ 222 (472)
++|.. ..+|. ..++|+.|++.++.
T Consensus 441 s~N~l-~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 441 SNNQI-SKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp CSSCC-CSCCTHHHHTTCCCSEEECCSSC
T ss_pred cCCcc-CcCCHHHHccCCCCCEEECCCCC
Confidence 77653 34553 13567777777653
No 9
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=2.6e-19 Score=176.04 Aligned_cols=212 Identities=19% Similarity=0.156 Sum_probs=127.3
Q ss_pred CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
++|++|+|++|.|+.+++ .++.+++|++|+|++|......|..+..+++|++|++++|. +..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEEC
Confidence 467888888888887765 57888888888888877444447778888888888888865 445665543 56777777
Q ss_pred eCccCCCCCc-cccCCCCCcEEEecCCCCCC----CCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCC
Q 012027 81 SGTAIRCPPS-SIFLMKNLKTLSFRGCNGPP----SSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLG 155 (472)
Q Consensus 81 ~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~ 155 (472)
++|.+..++. .+.++++|+.|++++|.... ......+.....+....+.+.. +|. ...++|+.|++++|.+.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~-~~~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQ-GLPPSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCS-SCCTTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCc-cccccCCEEECCCCcCC
Confidence 7777765544 35666777777776665321 1111122222223333333221 222 11256666666666664
Q ss_pred CCCCCCCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCC---CCCccEEEEccC
Q 012027 156 EGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGC 221 (472)
Q Consensus 156 ~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c 221 (472)
+..|..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|+ +..+|.. .++|+.|++.++
T Consensus 206 -~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 206 -KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp -EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS
T ss_pred -ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC
Confidence 2334556666666666666666665443 56666666666666663 3344431 245666666654
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=2e-19 Score=173.06 Aligned_cols=195 Identities=21% Similarity=0.236 Sum_probs=144.0
Q ss_pred CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhh-hhhhCCCCCCCEEe
Q 012027 2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENL-LETVGQVESLEELD 79 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~ 79 (472)
++|++|+|+++.++.++. .++.+++|++|+|++|......|..+.++++|++|++++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 467788888888887764 4777888888888877633333667777888888888887645555 66777788888888
Q ss_pred eeCccCCCC-CccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCC
Q 012027 80 ISGTAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA 158 (472)
Q Consensus 80 L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~ 158 (472)
+++|.+..+ |..+.++++|+.|++++|.... .....+..+++|+.|++++|.+..
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~~~~l~~L~~L~l~~n~l~~-- 167 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQA----------------------LPDDTFRDLGNLTHLFLHGNRISS-- 167 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----------------------CCTTTTTTCTTCCEEECCSSCCCE--
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccc----------------------cCHhHhccCCCccEEECCCCcccc--
Confidence 888887766 4557778888888887775322 112237788999999999999863
Q ss_pred CCC-CCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC----CCCCccEEEEccC
Q 012027 159 IPS-DIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGC 221 (472)
Q Consensus 159 lp~-~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c 221 (472)
+|. .+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|.. ..++. -.++|+.|++.++
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCHHHHTTCTTCCEEECCSS
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC-CcCCHHHcccCcccCEEeccCC
Confidence 554 588999999999999999865 78899999999999999854 33431 1246777777664
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=1.3e-19 Score=182.54 Aligned_cols=221 Identities=18% Similarity=0.152 Sum_probs=146.8
Q ss_pred CCCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhh-hCCCCCCCEE
Q 012027 1 MECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLET-VGQVESLEEL 78 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L 78 (472)
|++|++|+|+++.++.+++ .++.+++|++|+|++|......|..+.++++|++|++++|. +..+|.. ++++++|++|
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEE
Confidence 4567777777777766654 56777777777777765333334456677777777777754 3345544 4667777777
Q ss_pred eeeCccCCCCC-ccccCCCCCcEEEecCCCCCCCCCCCCCCcch------------------------------------
Q 012027 79 DISGTAIRCPP-SSIFLMKNLKTLSFRGCNGPPSSASCYLPFPI------------------------------------ 121 (472)
Q Consensus 79 ~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~------------------------------------ 121 (472)
++++|.+..++ ..+..+++|+.|++++|..... +...++...
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~ 225 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 225 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCC
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeecccccccccCCCCcceEEECCCCeeeecccccc
Confidence 77777776553 3466777777777777653221 111111110
Q ss_pred ----hhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeec
Q 012027 122 ----NLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKL 197 (472)
Q Consensus 122 ----~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l 197 (472)
.+....+.+. ..+.+..+++|++|++++|.+. +..|..+..+++|+.|+|++|.++.+|..+..+++|+.|++
T Consensus 226 ~~L~~L~l~~n~l~--~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 226 VELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 302 (390)
T ss_dssp SSCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEEC
T ss_pred ccccEEECCCCCCc--ccHHHcCCCCccEEECCCCcCC-CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEEC
Confidence 1111112221 1234667889999999999986 45688899999999999999999999998999999999999
Q ss_pred cCccccccCCCC---CCCccEEEEccCCCccccc
Q 012027 198 EDCKRLQSLPQL---PPNVEKVRVNGCASLVTLL 228 (472)
Q Consensus 198 ~~c~~L~~lp~l---p~~L~~L~~~~c~sL~~~~ 228 (472)
++|+ +..+|.. .++|+.|++.+|. +..++
T Consensus 303 ~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 303 SHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp CSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred CCCc-ceecCccccccCcCCEEECCCCc-cceeC
Confidence 9995 4455532 2689999998875 44443
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=1.2e-19 Score=198.55 Aligned_cols=220 Identities=22% Similarity=0.197 Sum_probs=148.1
Q ss_pred CCccEEEeeCCCCe-eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 2 ECLRELLLDKTDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 2 ~~L~~L~L~~~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
++|++|+|++|.+. .+|..++.+++|++|++++|.....+|..+.++++|++|++++|...+.+|..++.+++|++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 45777777777776 56667777777888888777755577777777777888888777766677777777778888888
Q ss_pred eCccCC-CCCccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCC
Q 012027 81 SGTAIR-CPPSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEG 157 (472)
Q Consensus 81 ~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~ 157 (472)
++|.+. .+|..+.++++|+.|++++|......+ ...+.....+....+.+.+.....+..+++|+.|++++|.+. +
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g 552 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN-G 552 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE-S
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC-C
Confidence 887777 567777777888888887776443332 223333334455555555444444677777777777777554 2
Q ss_pred CCC----------------------------------------------------------------------CCCCCCC
Q 012027 158 AIP----------------------------------------------------------------------SDIGNLH 167 (472)
Q Consensus 158 ~lp----------------------------------------------------------------------~~l~~l~ 167 (472)
.+| ..++.++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 333 2344456
Q ss_pred CCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCC
Q 012027 168 SLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCA 222 (472)
Q Consensus 168 ~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~ 222 (472)
+|+.|+|++|+++ .+|..++.++.|+.|+|++|.....+|.- .++|+.|+++++.
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 6777777777776 67777777777777777777766666642 2456677766654
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.2e-19 Score=193.12 Aligned_cols=220 Identities=17% Similarity=0.145 Sum_probs=159.0
Q ss_pred CCCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhh-hCCCCCCCEE
Q 012027 1 MECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLET-VGQVESLEEL 78 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L 78 (472)
|++|++|+|++|.|..+++ .++.+++|++|+|++|......|..++++++|++|+|++|.. ..+|.. ++++++|++|
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC-CCCCHHHhccCCCCCEE
Confidence 4678888888888887764 688888888888888773333344567888888888888754 455544 5788888888
Q ss_pred eeeCccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcch------------------------------------
Q 012027 79 DISGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPI------------------------------------ 121 (472)
Q Consensus 79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~------------------------------------ 121 (472)
++++|.+..++. .++.+++|+.|++++|..... +...++...
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-ChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence 888888886644 578888888888888763221 111111111
Q ss_pred ----hhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeec
Q 012027 122 ----NLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKL 197 (472)
Q Consensus 122 ----~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l 197 (472)
.+....+.+.. .+.+..+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+|..+..+++|+.|+|
T Consensus 232 ~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 232 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 308 (597)
T ss_dssp SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC-CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEEC
Confidence 11112222222 244778899999999999997 56688899999999999999999999999999999999999
Q ss_pred cCccccccCCCC---CCCccEEEEccCCCcccc
Q 012027 198 EDCKRLQSLPQL---PPNVEKVRVNGCASLVTL 227 (472)
Q Consensus 198 ~~c~~L~~lp~l---p~~L~~L~~~~c~sL~~~ 227 (472)
++|.. ..+|.. .++|+.|++++|. +..+
T Consensus 309 s~N~l-~~i~~~~~~l~~L~~L~L~~N~-l~~~ 339 (597)
T 3oja_B 309 SHNHL-LHVERNQPQFDRLENLYLDHNS-IVTL 339 (597)
T ss_dssp CSSCC-CCCGGGHHHHTTCSEEECCSSC-CCCC
T ss_pred CCCCC-CccCcccccCCCCCEEECCCCC-CCCc
Confidence 99864 355532 2688999998875 4443
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=3.6e-19 Score=182.82 Aligned_cols=176 Identities=24% Similarity=0.262 Sum_probs=115.0
Q ss_pred CCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 2 ECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
++|++|+|++|+|+.+ |..++++++|++|+|++|......|..+.++++|++|+|++|......+..++.+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4688888888888876 455888888888888887643334467788888888888887644333455778888888888
Q ss_pred eCccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCC
Q 012027 81 SGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAI 159 (472)
Q Consensus 81 ~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~l 159 (472)
++|.+..+|. .+.++++|+.|++++|..+...+.. .+.++++|+.|++++|++.+ +
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---------------------~~~~l~~L~~L~L~~n~l~~--~ 211 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG---------------------AFEGLFNLKYLNLGMCNIKD--M 211 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---------------------TTTTCTTCCEEECTTSCCSS--C
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh---------------------hccCCCCCCEEECCCCcccc--c
Confidence 8888887765 5778888888888887644432211 14445555555555555532 3
Q ss_pred CCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCcc
Q 012027 160 PSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCK 201 (472)
Q Consensus 160 p~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~ 201 (472)
| .+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|.
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 3 245555555555555555533 3445555555555555554
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=2e-19 Score=181.13 Aligned_cols=223 Identities=16% Similarity=0.123 Sum_probs=168.8
Q ss_pred CCCccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027 1 MECLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL 78 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (472)
+++|+.|+++++.++.+|.. +..+++|++|+|++|. +..++ ..+..+++|++|++++|......|..++++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46899999999999999987 5889999999999987 55555 478999999999999987666667779999999999
Q ss_pred eeeCccCCCCCccc-cCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCC----------------
Q 012027 79 DISGTAIRCPPSSI-FLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLS---------------- 139 (472)
Q Consensus 79 ~L~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~---------------- 139 (472)
++++|.+..+|..+ .++++|++|++++|......+ ...+.....+....+.+....+..+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 99999999999875 889999999999997443222 22333333444444443332111111
Q ss_pred ---------------------CCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeec
Q 012027 140 ---------------------GLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKL 197 (472)
Q Consensus 140 ---------------------~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l 197 (472)
..++|+.|++++|.+.+ . ..++.+++|++|+|++|.+..+ |..+..+++|+.|++
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CCCcceEEECCCCeeeeccccccccccEEECCCCCCcc--c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 12356677777776653 2 4678899999999999999865 778999999999999
Q ss_pred cCccccccCCC---CCCCccEEEEccCCCcccccc
Q 012027 198 EDCKRLQSLPQ---LPPNVEKVRVNGCASLVTLLG 229 (472)
Q Consensus 198 ~~c~~L~~lp~---lp~~L~~L~~~~c~sL~~~~~ 229 (472)
++|+ +..+|. -.++|+.|++++| .+..++.
T Consensus 280 ~~n~-l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 312 (390)
T 3o6n_A 280 SNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVER 312 (390)
T ss_dssp CSSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGG
T ss_pred CCCc-CcccCcccCCCCCCCEEECCCC-cceecCc
Confidence 9985 444543 2468999999998 4555543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=1e-19 Score=194.91 Aligned_cols=220 Identities=15% Similarity=0.140 Sum_probs=123.4
Q ss_pred CCCccEEEeeCCCCe-eccccccCCcCCcEEEeecCcCCCccCcccCCCCC-CCEEEccCCCCchhhhhhhCCCC--CCC
Q 012027 1 MECLRELLLDKTDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKS-LKTLNLLGCFKFENLLETVGQVE--SLE 76 (472)
Q Consensus 1 l~~L~~L~L~~~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~-L~~L~Ls~c~~l~~lp~~l~~l~--~L~ 76 (472)
|++|++|+|++|.+. .+| .++.+++|++|++++|. +..+|..+..+++ |++|++++|... .+|..++.+. +|+
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS 405 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEE
T ss_pred CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccC
Confidence 456777777777777 666 67777777777777765 4466666666766 777777765533 6666655544 666
Q ss_pred EEeeeCccCC-CCCcccc-------CCCCCcEEEecCCCCCCCCCCC---CCCcchhhhcccCCCCcCCCCC--CC----
Q 012027 77 ELDISGTAIR-CPPSSIF-------LMKNLKTLSFRGCNGPPSSASC---YLPFPINLMRRSSDLGALMLPS--LS---- 139 (472)
Q Consensus 77 ~L~L~~~~i~-~lp~~i~-------~l~~L~~L~L~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~l~~--l~---- 139 (472)
+|++++|.+. .+|..+. .+.+|+.|++++|... ..+.. .+.....+....+.+. .+|. +.
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~~ 482 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENE 482 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETTE
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC--CcCHHHhccccc
Confidence 6666666665 3445555 5556666666666533 11211 1222223333333333 1221 11
Q ss_pred ---CCCCcCEEeccCCCCCCCCCCCCCC--CCCCCCEEEcCCCCCccCCcccCCCCCcceeeccC------ccccccCCC
Q 012027 140 ---GLGSLTKLDLSDCGLGEGAIPSDIG--NLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLED------CKRLQSLPQ 208 (472)
Q Consensus 140 ---~l~~L~~L~L~~~~l~~~~lp~~l~--~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~------c~~L~~lp~ 208 (472)
++++|+.|++++|++. .+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|++++ |...+.+|.
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred cccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 1226666666666664 3666555 66666666666666666666666666666666643 333344442
Q ss_pred C---CCCccEEEEccCCCcccccc
Q 012027 209 L---PPNVEKVRVNGCASLVTLLG 229 (472)
Q Consensus 209 l---p~~L~~L~~~~c~sL~~~~~ 229 (472)
- .++|+.|++++|.- ..++.
T Consensus 561 ~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCS
T ss_pred HHhcCCCCCEEECCCCcC-CccCH
Confidence 1 24566666666543 44443
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=8.4e-19 Score=172.61 Aligned_cols=104 Identities=22% Similarity=0.209 Sum_probs=88.9
Q ss_pred CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
++|++|+|++|.++.+++ .++.+++|++|++++|......|..+.++++|++|++++|. +..+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEEC
Confidence 578999999999998854 69999999999999987444447789999999999999975 557887765 89999999
Q ss_pred eCccCCCCCcc-ccCCCCCcEEEecCCCC
Q 012027 81 SGTAIRCPPSS-IFLMKNLKTLSFRGCNG 108 (472)
Q Consensus 81 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~~ 108 (472)
++|.+..+|.. +.++++|+.|++++|..
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 99999988764 78899999999999874
No 18
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=5.8e-19 Score=165.40 Aligned_cols=198 Identities=16% Similarity=0.220 Sum_probs=153.9
Q ss_pred CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEE
Q 012027 2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEEL 78 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L 78 (472)
++|++|+|++|+|+.+|+ .++.+++|++|++++|+.++.+|. .+.++++|++|++++|..+..+| ..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 468999999999998877 588999999999999876777775 67889999999999855566665 568889999999
Q ss_pred eeeCccCCCCCccccCCCCCc---EEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcC-EEeccCCCC
Q 012027 79 DISGTAIRCPPSSIFLMKNLK---TLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLT-KLDLSDCGL 154 (472)
Q Consensus 79 ~L~~~~i~~lp~~i~~l~~L~---~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~-~L~L~~~~l 154 (472)
++++|.++.+|. +..+++|+ .|++++|..+.. .....+.++++|+ .|++++|.+
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~---------------------i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS---------------------IPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE---------------------ECTTTTTTTBSSEEEEECCSCCC
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhh---------------------cCcccccchhcceeEEEcCCCCC
Confidence 999999999887 78888887 999998832221 0112277888999 999999988
Q ss_pred CCCCCCCCCCCCCCCCEEEcCCCC-CccCCc-ccCCC-CCcceeeccCccccccCCC-CCCCccEEEEccCCCc
Q 012027 155 GEGAIPSDIGNLHSLKTLYLSKNN-FVTLPA-SINCL-FNLEKLKLEDCKRLQSLPQ-LPPNVEKVRVNGCASL 224 (472)
Q Consensus 155 ~~~~lp~~l~~l~~L~~L~Ls~n~-~~~lp~-~i~~l-~~L~~L~l~~c~~L~~lp~-lp~~L~~L~~~~c~sL 224 (472)
. .+|......++|+.|+|++|. ++.+|. .+..+ ++|+.|++++|+ ++.+|. ..++|+.|++.++..|
T Consensus 169 ~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 169 T--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp C--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC---
T ss_pred c--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccCC
Confidence 6 377655444899999999994 988864 57788 999999999865 455654 3567888888877543
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=1.1e-18 Score=178.60 Aligned_cols=174 Identities=26% Similarity=0.336 Sum_probs=107.6
Q ss_pred CCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEE
Q 012027 2 ECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEEL 78 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L 78 (472)
++++.|+|++|+|+.++ ..++++++|++|+|++|. +..++ ..+.++++|++|+|++|.. ..+| ..+..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCC-SSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcC-CeeCHhHhhccccCcee
Confidence 45778888888888765 457788888888888876 44444 5677788888888888644 3444 457778888888
Q ss_pred eeeCccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCC
Q 012027 79 DISGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEG 157 (472)
Q Consensus 79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~ 157 (472)
++++|.+..+|. .+.++++|+.|++++|......+.. .+.++++|+.|++++|++.+
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---------------------~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG---------------------AFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---------------------TTTTCSSCCEEECTTSCCSS-
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc---------------------hhhcccccCeecCCCCcCcc-
Confidence 888888876654 5677888888888876544322211 13444455555555554432
Q ss_pred CCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCcc
Q 012027 158 AIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCK 201 (472)
Q Consensus 158 ~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~ 201 (472)
+|. +..+++|+.|+|++|.++.+ |..+..+++|+.|++++|.
T Consensus 200 -~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 200 -IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp -CCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred -ccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 332 44445555555555555433 3344455555555555443
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=1.2e-18 Score=178.79 Aligned_cols=106 Identities=23% Similarity=0.226 Sum_probs=62.3
Q ss_pred CCccEEEeeCCCCe-ec-cccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhh--hCCCCCCCE
Q 012027 2 ECLRELLLDKTDIK-EM-PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLET--VGQVESLEE 77 (472)
Q Consensus 2 ~~L~~L~L~~~~l~-~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~--l~~l~~L~~ 77 (472)
++|++|+|++|.+. .+ +..++.+++|++|+|++|......|..+.++++|++|++++|...+.+|.. ++.+++|++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 133 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence 44555555555443 33 233555555555555555533333555666666666666666554444444 666777777
Q ss_pred EeeeCccCCCC-Ccc-ccCCCCCcEEEecCCC
Q 012027 78 LDISGTAIRCP-PSS-IFLMKNLKTLSFRGCN 107 (472)
Q Consensus 78 L~L~~~~i~~l-p~~-i~~l~~L~~L~L~~~~ 107 (472)
|++++|.+..+ |.. +.++++|++|++++|.
T Consensus 134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp EECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred EECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 77777777655 433 6677777777777765
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=4e-19 Score=173.22 Aligned_cols=186 Identities=21% Similarity=0.344 Sum_probs=152.6
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
|++|++|+++++.++.++ .+..+++|++|++++|. +..++. +..+++|++|++++|. +..++ .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 357999999999999987 58999999999999986 777777 8899999999999976 55565 5889999999999
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
++|.+..++. +..+++|+.|++++|.... ++.+..+++|+.|++++|.+.+ ++
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~------------------------~~~l~~l~~L~~L~l~~n~l~~--~~ 167 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQITN------------------------ISPLAGLTNLQYLSIGNAQVSD--LT 167 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSCCCC------------------------CGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCccCc------------------------CccccCCCCccEEEccCCcCCC--Ch
Confidence 9999998876 8999999999999986322 2236778899999999998864 55
Q ss_pred CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC--CCCccEEEEccC
Q 012027 161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL--PPNVEKVRVNGC 221 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~~c 221 (472)
. +..+++|+.|+|++|.++.++. +..+++|+.|++++|+. ..++.+ .++|+.|++.++
T Consensus 168 ~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 168 P-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp G-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCC-CBCGGGTTCTTCCEEEEEEE
T ss_pred h-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCcc-CccccccCCCCCCEEEccCC
Confidence 5 8899999999999999998885 88899999999999863 334322 246666666664
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=1.6e-18 Score=165.87 Aligned_cols=176 Identities=23% Similarity=0.283 Sum_probs=136.4
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+++|+.|++.++.+..++. ++.+++|++|++++|. +..++ .+..+++|++|++++|......+..++.+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCcccccc-cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 3678889998888887764 8888999999998876 55555 5788889999999987655444555788889999999
Q ss_pred eCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCC
Q 012027 81 SGTAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGA 158 (472)
Q Consensus 81 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~ 158 (472)
++|.+..+|.. +..+++|+.|++++|.... ..+. +..+++|+.|++++|++. +.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~-~~ 172 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-----------------------LPKGVFDKLTNLTELDLSYNQLQ-SL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCc-----------------------cCHHHhccCccCCEEECCCCCcC-cc
Confidence 99988877655 6788899999998885321 1222 577888999999999886 34
Q ss_pred CCCCCCCCCCCCEEEcCCCCCccCCcc-cCCCCCcceeeccCcccc
Q 012027 159 IPSDIGNLHSLKTLYLSKNNFVTLPAS-INCLFNLEKLKLEDCKRL 203 (472)
Q Consensus 159 lp~~l~~l~~L~~L~Ls~n~~~~lp~~-i~~l~~L~~L~l~~c~~L 203 (472)
.+..++.+++|+.|+|++|.++.+|.. +..+++|+.|++++|+..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 445578889999999999998877654 688899999999888643
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=1.1e-18 Score=172.54 Aligned_cols=214 Identities=15% Similarity=0.218 Sum_probs=149.9
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+++|++|++++|.++.++. +..+++|++|++++|. +..+| .+.++++|++|++++|. +..++. +..+++|++|++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNL 139 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEEC
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEEC
Confidence 5789999999999998887 8899999999999885 66666 48889999999999875 444555 778888888888
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
++|.....+..+..+++|+.|++++|..........++....+....+.+.. ++.+..+++|+.|++++|.+.. ++
T Consensus 140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~~--~~ 215 (347)
T 4fmz_A 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD--IT 215 (347)
T ss_dssp TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred CCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc--cccccCCCccceeecccCCCCC--Cc
Confidence 8886555555588888888888888875443333333333344444443332 3336667778888888877753 33
Q ss_pred CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC--CCCccEEEEccCCCcccc
Q 012027 161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL--PPNVEKVRVNGCASLVTL 227 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~~c~sL~~~ 227 (472)
. +..+++|+.|++++|.++.+|. +..+++|+.|++++|. +..++.+ .++|+.|++.+| .+..+
T Consensus 216 ~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~ 280 (347)
T 4fmz_A 216 P-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSN-QISDI 280 (347)
T ss_dssp G-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCC
T ss_pred h-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCC-ccCCC
Confidence 3 6777788888888888777775 7777888888887774 3334322 357777777776 34433
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=8.5e-19 Score=179.85 Aligned_cols=227 Identities=20% Similarity=0.138 Sum_probs=167.1
Q ss_pred CCCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccCcc--cCCCCCCCEEEccCCCCchhhhhh-hCCCCCCC
Q 012027 1 MECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSN--INSLKSLKTLNLLGCFKFENLLET-VGQVESLE 76 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~--i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~ 76 (472)
|++|++|+|++|.+..+ |..++.+++|++|+|++|.....+|.. +..+++|++|++++|......|.. ++++++|+
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 57899999999999976 677999999999999999855555554 889999999999998876665765 88999999
Q ss_pred EEeeeCccCCCC-CccccC----------------------------------CCCCcEEEecCCCCCCCCC--------
Q 012027 77 ELDISGTAIRCP-PSSIFL----------------------------------MKNLKTLSFRGCNGPPSSA-------- 113 (472)
Q Consensus 77 ~L~L~~~~i~~l-p~~i~~----------------------------------l~~L~~L~L~~~~~~~~~~-------- 113 (472)
+|++++|.+..+ |..+.. +++|+.|++++|......+
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence 999999998855 333433 3567777777774211000
Q ss_pred --------------------CCC-------------CCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027 114 --------------------SCY-------------LPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 114 --------------------~~~-------------~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
... ......+....+.+.......+..+++|+.|++++|.+. +..|
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~ 316 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDD 316 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccCh
Confidence 000 001112233333444333334888999999999999996 4557
Q ss_pred CCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCCCcccccc
Q 012027 161 SDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCASLVTLLG 229 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~sL~~~~~ 229 (472)
..++.+++|+.|+|++|.+..+ |..+..+++|+.|++++|......|.. .++|+.|++.++ .++.++.
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCH
Confidence 7899999999999999999866 567899999999999999765444432 368899999886 4555443
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=1.3e-18 Score=185.15 Aligned_cols=218 Identities=22% Similarity=0.191 Sum_probs=135.0
Q ss_pred CccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 3 CLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
+|++|+++++.+..+++. ++.+++|++|++++|. +..+|..+..+++|++|++++|......|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 467777777777766554 6777777777777765 66777777777777777777776555556667777777777777
Q ss_pred CccCC-CCCcc-ccCCCCCcEEEecCCCCCCC----CCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCC
Q 012027 82 GTAIR-CPPSS-IFLMKNLKTLSFRGCNGPPS----SASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLG 155 (472)
Q Consensus 82 ~~~i~-~lp~~-i~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~ 155 (472)
+|.+. .+|.. +..+++|+.|++++|..... .....++....+....+.+.......+..+++|+.|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 77665 45443 66777777777777653321 11222333333444444444333334666777777777777665
Q ss_pred CCCCCCCCCCCCCCCEEEcCCCCCcc-CCcccCCCCCcceeeccCcccccc-CCC-----CCCCccEEEEccC
Q 012027 156 EGAIPSDIGNLHSLKTLYLSKNNFVT-LPASINCLFNLEKLKLEDCKRLQS-LPQ-----LPPNVEKVRVNGC 221 (472)
Q Consensus 156 ~~~lp~~l~~l~~L~~L~Ls~n~~~~-lp~~i~~l~~L~~L~l~~c~~L~~-lp~-----lp~~L~~L~~~~c 221 (472)
....+..+..+++|+.|++++|.+.. .|..+..+++|+.|++++|+.... ++. -.++|+.|++++|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 32223346677777777777777764 345566777777777777654321 111 1246667777666
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=179.16 Aligned_cols=176 Identities=19% Similarity=0.241 Sum_probs=121.7
Q ss_pred CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCcc-CcccCCCCCCCEEEccCCCCchhhhh-hhCCCCCCCEE
Q 012027 2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRL-PSNINSLKSLKTLNLLGCFKFENLLE-TVGQVESLEEL 78 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L 78 (472)
++|++|+|++|.++.+|. .++.+++|++|++++|. +..+ |..+.++++|++|++++|... .+|. .++++++|++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEE
Confidence 478899999999988876 68889999999999886 4444 566888899999999987544 4554 48889999999
Q ss_pred eeeCccCCCCCc--cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027 79 DISGTAIRCPPS--SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE 156 (472)
Q Consensus 79 ~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~ 156 (472)
++++|.+..+|. .+.++++|+.|++++|...... ....+..+++|++|++++|.+.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~---------------------~~~~~~~l~~L~~L~l~~n~l~- 187 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI---------------------QRKDFAGLTFLEELEIDASDLQ- 187 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE---------------------CTTTTTTCCEEEEEEEEETTCC-
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCcccccc---------------------CHHHccCCCCCCEEECCCCCcC-
Confidence 999999888886 6788999999999888532211 1112455556666666666554
Q ss_pred CCCCCCCCCCCCCCEEEcCCCCCccCCccc-CCCCCcceeeccCcc
Q 012027 157 GAIPSDIGNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCK 201 (472)
Q Consensus 157 ~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i-~~l~~L~~L~l~~c~ 201 (472)
+..|..++.+++|++|++++|.+..+|..+ ..+++|+.|++++|.
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 334555666666666666666655555432 235556666655554
No 27
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=7e-19 Score=168.48 Aligned_cols=180 Identities=26% Similarity=0.279 Sum_probs=109.2
Q ss_pred CccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 3 CLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+|++|+|++|.++.++. .++.+++|++|++++|. +..++ ..+.++++|++|++++|......+..+.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46667777766666654 46666777777776664 34443 35666667777777766544444456666677777777
Q ss_pred eCccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCC
Q 012027 81 SGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGA 158 (472)
Q Consensus 81 ~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~ 158 (472)
++|.+..++. .+..+++|+.|++++|.... ..+|. +..+++|+.|++++|.+.. .
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~l~~~~~~l~~L~~L~Ls~N~l~~-~ 164 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQS----------------------FKLPEYFSNLTNLEHLDLSSNKIQS-I 164 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCC----------------------CCCCGGGGGCTTCCEEECCSSCCCE-E
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccce----------------------ecCchhhccCCCCCEEECCCCCCCc-C
Confidence 7766665544 46666677777766665221 11222 5566677777777776642 2
Q ss_pred CCCCCCCCCCCC----EEEcCCCCCccCCcccCCCCCcceeeccCccccccCC
Q 012027 159 IPSDIGNLHSLK----TLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLP 207 (472)
Q Consensus 159 lp~~l~~l~~L~----~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp 207 (472)
.+..+..+++|+ .|++++|.++.+|..+....+|+.|++++|. ++.+|
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~ 216 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVP 216 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecC
Confidence 233455455555 6777777777666665555677777777765 33443
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.79 E-value=5.5e-19 Score=187.99 Aligned_cols=215 Identities=20% Similarity=0.178 Sum_probs=127.3
Q ss_pred CCCccEEEeeCCC-CeeccccccCCcCCcEEEeecCcCCCcc---CcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCC
Q 012027 1 MECLRELLLDKTD-IKEMPLSIELLSGLVQLTLKGCKNLVRL---PSNINSLKSLKTLNLLGCFKFENLLETVGQVESLE 76 (472)
Q Consensus 1 l~~L~~L~L~~~~-l~~lp~si~~L~~L~~L~L~~c~~l~~l---p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~ 76 (472)
+++|++|++++|. +..+ .++.+++|++|++++|. +..+ |..+..+++|++|++++|. +..+|..+..+++|+
T Consensus 327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~ 402 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQ 402 (606)
T ss_dssp CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCC
T ss_pred CCccceeeccCCcCccch--hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCC
Confidence 4677788887773 3333 36677778888887765 3333 5666777778888877765 455667777777777
Q ss_pred EEeeeCccCCCCC--ccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccC
Q 012027 77 ELDISGTAIRCPP--SSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSD 151 (472)
Q Consensus 77 ~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~ 151 (472)
+|++++|.+..++ ..+..+++|+.|++++|......+ ...+.....+....+.+....+|. +..+++|+.|++++
T Consensus 403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 8877777777554 366777777777777776332111 111122222222233232222232 55666666666666
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC----CCCCccEEEEccC
Q 012027 152 CGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGC 221 (472)
Q Consensus 152 ~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c 221 (472)
|.+. +..|..++.+++|+.|+|++|+++.+ |..+..+++|+.|++++|+ ++.+|. +|.+|+.|++.++
T Consensus 483 n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 483 CQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp SCCC-EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred CcCC-ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence 6664 34455566666666666666666644 5566666666666666664 334443 3334555555553
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=4.6e-18 Score=168.08 Aligned_cols=213 Identities=15% Similarity=0.223 Sum_probs=166.8
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+++|++|++.++.+..++. ++.+++|++|++++|. +..+|. +..+++|++|++++|. +..++ .+..+++|++|++
T Consensus 43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEEC
T ss_pred cccccEEEEeCCccccchh-hhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEEC
Confidence 4689999999999998876 8999999999999985 777777 8899999999999984 45555 5899999999999
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCCCCCCCC-CCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCC
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA-SCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAI 159 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~l 159 (472)
++|.+..++. +..+++|+.|++++|......+ ...+.....+....+... ..+.+..+++|+.|++++|.+.+ +
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~l~~L~~L~l~~n~l~~--~ 192 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK--DVTPIANLTDLYSLSLNYNQIED--I 192 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECTTSCCCC--C
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC--CchhhccCCCCCEEEccCCcccc--c
Confidence 9999998887 8899999999999996444322 222333333333433333 23337788999999999999864 5
Q ss_pred CCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC--CCCCccEEEEccCCCcccc
Q 012027 160 PSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ--LPPNVEKVRVNGCASLVTL 227 (472)
Q Consensus 160 p~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~--lp~~L~~L~~~~c~sL~~~ 227 (472)
+. +..+++|+.|++++|.+..++. +..+++|+.|++++|.. ..++. -.++|+.|++.+| .+..+
T Consensus 193 ~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n-~l~~~ 258 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTN-QISDI 258 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSS-CCCCC
T ss_pred cc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCC-ccCCC
Confidence 54 8889999999999999998876 88999999999999863 33432 2368999999887 34443
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=4.6e-18 Score=164.24 Aligned_cols=193 Identities=24% Similarity=0.246 Sum_probs=156.5
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+++|+++++.++.++.+|..+. ++|+.|+|++|......|..+..+++|++|++++|. +..++.. +.+++|++|++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEEC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEEC
Confidence 5789999999999999998764 799999999988544456779999999999999976 5556554 78999999999
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
++|.+..+|..+..+++|+.|++++|..... ....+.++++|+.|++++|.+.. ..+
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l----------------------~~~~~~~l~~L~~L~L~~N~l~~-~~~ 141 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSL----------------------PLGALRGLGELQELYLKGNELKT-LPP 141 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCC----------------------CSSTTTTCTTCCEEECTTSCCCC-CCT
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCccc----------------------CHHHHcCCCCCCEEECCCCCCCc-cCh
Confidence 9999999999999999999999999873321 11237889999999999999963 334
Q ss_pred CCCCCCCCCCEEEcCCCCCccCCccc-CCCCCcceeeccCccccccCCCCC---CCccEEEEccC
Q 012027 161 SDIGNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCKRLQSLPQLP---PNVEKVRVNGC 221 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i-~~l~~L~~L~l~~c~~L~~lp~lp---~~L~~L~~~~c 221 (472)
..+..+++|+.|+|++|.++.+|..+ ..+++|+.|++++|+ ++.+|.-. .+|+.|++.+.
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSC
T ss_pred hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCC
Confidence 45789999999999999999998764 789999999999986 45565421 35666666553
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=2.4e-18 Score=177.80 Aligned_cols=199 Identities=20% Similarity=0.193 Sum_probs=133.0
Q ss_pred CCCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027 1 MECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL 78 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (472)
+++|++|+|++|.|+.+ |..++++++|++|+|++|. +..+|. .+.++++|++|+|++|......|..+..+++|++|
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 57899999999999977 6678999999999999976 667765 46889999999999988777677888899999999
Q ss_pred eeeCccCCCC-CccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCC
Q 012027 79 DISGTAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLG 155 (472)
Q Consensus 79 ~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~ 155 (472)
++++|.+..+ |..+..+++|+.|++++|....... ...+.....+....+.+.......+..+++|+.|++++|+..
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 9999988855 5578888999999998886432211 122233333444444444333333566666666666665543
Q ss_pred CCCCCCCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCcc
Q 012027 156 EGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCK 201 (472)
Q Consensus 156 ~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~ 201 (472)
+.+|..+....+|+.|+|++|.++.+|. .+..+++|+.|++++|.
T Consensus 214 -~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 214 -DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp -CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred -cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 2344444334455555555555555542 34455555555555543
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=6.4e-18 Score=162.53 Aligned_cols=197 Identities=20% Similarity=0.281 Sum_probs=159.8
Q ss_pred cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027 5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT 83 (472)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 83 (472)
+.++.+++.++.+|..+ .++|++|++++|. +..+| ..+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 57888889999999644 6799999999987 55565 56899999999999998765555888999999999999999
Q ss_pred c-CCCC-CccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCC
Q 012027 84 A-IRCP-PSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPS 161 (472)
Q Consensus 84 ~-i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~ 161 (472)
. +..+ |..+..+++|+.|++++|..... ....+..+++|++|++++|.+.. ..+.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~l~~n~l~~-~~~~ 147 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQEL----------------------GPGLFRGLAALQYLYLQDNALQA-LPDD 147 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCC----------------------CTTTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEE----------------------CHhHhhCCcCCCEEECCCCcccc-cCHh
Confidence 7 8877 67889999999999999873321 12237789999999999999963 3345
Q ss_pred CCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCCCccccc
Q 012027 162 DIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCASLVTLL 228 (472)
Q Consensus 162 ~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~sL~~~~ 228 (472)
.++.+++|+.|+|++|.++.+|. .+..+++|+.|++++|......|.. .++|+.|++.++ .+..++
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 217 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALP 217 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCC
Confidence 58999999999999999998886 4899999999999999755443432 258999999887 344433
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=4.1e-18 Score=176.01 Aligned_cols=218 Identities=22% Similarity=0.174 Sum_probs=153.0
Q ss_pred CCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEe
Q 012027 2 ECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELD 79 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~ 79 (472)
++|++|+|++|.|+.++ ..|..+++|++|+|++|......|..+.++++|++|+|++|. +..+| ..+.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEE
Confidence 46788888888888774 468888888888888876444447778888888888888865 44454 4567888888888
Q ss_pred eeCccCCCC-CccccCCCCCcEEEecCCCCCCC--CCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027 80 ISGTAIRCP-PSSIFLMKNLKTLSFRGCNGPPS--SASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE 156 (472)
Q Consensus 80 L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~ 156 (472)
+++|.+..+ |..+.++++|+.|++++|..... ..+..+.....+....+.+.......+..+++|+.|++++|.+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~- 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN- 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-
Confidence 888888854 56778888888888888763321 12233334444555555544322222777888888888888875
Q ss_pred CCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCCC----CCCCccEEEEccCC
Q 012027 157 GAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGCA 222 (472)
Q Consensus 157 ~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c~ 222 (472)
+..+..+..+++|+.|++++|.+. .+|..+....+|+.|++++|. +..+|. -.++|+.|+++++.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc
Confidence 344556888888888888887654 677777677788888888874 445551 23577888877663
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.5e-18 Score=184.53 Aligned_cols=223 Identities=16% Similarity=0.132 Sum_probs=167.9
Q ss_pred CCCccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027 1 MECLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL 78 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (472)
+.+++.|++.++.+..+|+. ++.+++|++|+|++|. +..+| ..+..+++|++|+|++|......|..++++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 36789999999999999886 6889999999999987 55554 589999999999999988666566778999999999
Q ss_pred eeeCccCCCCCccc-cCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCCC---------------
Q 012027 79 DISGTAIRCPPSSI-FLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLSG--------------- 140 (472)
Q Consensus 79 ~L~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~~--------------- 140 (472)
+|++|.+..+|..+ +++++|+.|++++|......+ +..+.....+....+.+....+..+..
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 99999999998875 899999999999997443322 233333344444444443321111111
Q ss_pred ----------------------CCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeec
Q 012027 141 ----------------------LGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKL 197 (472)
Q Consensus 141 ----------------------l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l 197 (472)
.++|+.|++++|.+.. +..++.+++|+.|+|++|.+..+ |..+..+++|+.|+|
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 285 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence 1346666666666652 35688899999999999999855 788999999999999
Q ss_pred cCccccccCCCC---CCCccEEEEccCCCcccccc
Q 012027 198 EDCKRLQSLPQL---PPNVEKVRVNGCASLVTLLG 229 (472)
Q Consensus 198 ~~c~~L~~lp~l---p~~L~~L~~~~c~sL~~~~~ 229 (472)
++|. +..+|.. .++|+.|++++|. +..++.
T Consensus 286 s~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~ 318 (597)
T 3oja_B 286 SNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVER 318 (597)
T ss_dssp TTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGG
T ss_pred CCCC-CCCCCcccccCCCCcEEECCCCC-CCccCc
Confidence 9986 4445532 4689999999884 445543
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=4.1e-18 Score=167.50 Aligned_cols=217 Identities=21% Similarity=0.244 Sum_probs=162.0
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
+|+.++++++.++.+|..+. ++|++|+|++|. +..+|. .+.++++|++|++++|......|..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 57889999999998887654 789999999987 555554 68899999999999987666568889999999999999
Q ss_pred CccCCCCCccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCc--CCCCCCCCCCCcCEEeccCCCCCCC
Q 012027 82 GTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGA--LMLPSLSGLGSLTKLDLSDCGLGEG 157 (472)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~--~~l~~l~~l~~L~~L~L~~~~l~~~ 157 (472)
+|.+.++|..+. ++|+.|++++|......+ +..+.....+....+.... .....+..+++|+.|++++|.+..
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 999999988765 799999999887432211 1223333334444444432 223337788999999999998864
Q ss_pred CCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC---CCCCccEEEEccCCCcccccc
Q 012027 158 AIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ---LPPNVEKVRVNGCASLVTLLG 229 (472)
Q Consensus 158 ~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~---lp~~L~~L~~~~c~sL~~~~~ 229 (472)
+|..+. ++|+.|++++|.++.+ |..+..+++|+.|++++|..-...+. -.++|+.|++.+| .+..++.
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~ 257 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPG 257 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCCh
Confidence 777654 8899999999999866 67889999999999999864433221 1257899999887 4555554
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=6.1e-18 Score=173.05 Aligned_cols=194 Identities=23% Similarity=0.311 Sum_probs=158.4
Q ss_pred CCCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027 1 MECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL 78 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (472)
+++|++|+|++|.|..++ ..+..+++|++|+|++|. +..+|. .+..+++|++|+|++|......+..+.++++|++|
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence 578999999999999886 568999999999999986 667765 68899999999999987554445578999999999
Q ss_pred eeeC-ccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027 79 DISG-TAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE 156 (472)
Q Consensus 79 ~L~~-~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~ 156 (472)
++++ +.+..++. .+.++++|+.|++++|... .+|.+..+++|+.|+|++|.+.
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~------------------------~~~~~~~l~~L~~L~Ls~N~l~- 220 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR------------------------EIPNLTPLIKLDELDLSGNHLS- 220 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS------------------------SCCCCTTCSSCCEEECTTSCCC-
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCc------------------------cccccCCCcccCEEECCCCccC-
Confidence 9999 45666655 6889999999999998632 2456788899999999999986
Q ss_pred CCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC-C---CCCccEEEEccC
Q 012027 157 GAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ-L---PPNVEKVRVNGC 221 (472)
Q Consensus 157 ~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~-l---p~~L~~L~~~~c 221 (472)
+..|..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+ +..+|. . .++|+.|+++++
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSS
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCC
Confidence 45578899999999999999999966 4578899999999999985 444443 1 245666666654
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=6.8e-18 Score=166.10 Aligned_cols=189 Identities=20% Similarity=0.207 Sum_probs=126.7
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCcc-CcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRL-PSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
+|+.++++++.++.+|..+. ++|++|++++|. +..+ |..+.++++|++|++++|......|..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 58899999999999998664 789999999987 5555 4578999999999999987666568889999999999999
Q ss_pred CccCCCCCccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCc--CCCCCCCCCCCcCEEeccCCCCCCC
Q 012027 82 GTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGA--LMLPSLSGLGSLTKLDLSDCGLGEG 157 (472)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~--~~l~~l~~l~~L~~L~L~~~~l~~~ 157 (472)
+|.+..+|..+. ++|++|++++|......+ +..+.....+....+.+.. .....+..+ +|+.|++++|.+..
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 999999998776 899999999987443222 2233333334444444432 112224444 55555555555532
Q ss_pred CCCCCCCCCCCCCEEEcCCCCCccCC-cccCCCCCcceeeccCcc
Q 012027 158 AIPSDIGNLHSLKTLYLSKNNFVTLP-ASINCLFNLEKLKLEDCK 201 (472)
Q Consensus 158 ~lp~~l~~l~~L~~L~Ls~n~~~~lp-~~i~~l~~L~~L~l~~c~ 201 (472)
+|..+. ++|++|+|++|.++.++ ..+..+++|+.|++++|.
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 444332 45555555555555443 345555555555555543
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=5.1e-18 Score=186.20 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=71.8
Q ss_pred CCccEEEeeCCCCeeccc--cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCC-CCEE
Q 012027 2 ECLRELLLDKTDIKEMPL--SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVES-LEEL 78 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~--si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~-L~~L 78 (472)
++|++|+|++|.+..+|. .++++++|+.|+|++|. +..+| .++.+++|++|+|++|... .+|..+..+++ |++|
T Consensus 548 ~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp TTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred CCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence 467777777777777776 67777777777777765 44667 5677777777777776544 67777777777 7777
Q ss_pred eeeCccCCCCCccccCCCC--CcEEEecCCCC
Q 012027 79 DISGTAIRCPPSSIFLMKN--LKTLSFRGCNG 108 (472)
Q Consensus 79 ~L~~~~i~~lp~~i~~l~~--L~~L~L~~~~~ 108 (472)
++++|.+..+|..+..+.. |+.|++++|..
T Consensus 625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp ECCSSCCCSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred ECcCCCCCcCchhhhccccCCCCEEECcCCcC
Confidence 7777777777766665543 77777776653
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=3.8e-18 Score=178.13 Aligned_cols=103 Identities=20% Similarity=0.064 Sum_probs=68.2
Q ss_pred CCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 2 ECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
++|++|+|++|.++.++ ..++.+++|++|+|++|......|..+.++++|++|++++|. +..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEec
Confidence 35677777777777665 356777777777777766333335667777777777777754 3456655 6677777777
Q ss_pred eCccCCC--CCccccCCCCCcEEEecCCC
Q 012027 81 SGTAIRC--PPSSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 81 ~~~~i~~--lp~~i~~l~~L~~L~L~~~~ 107 (472)
++|.+.. +|..++++++|++|++++|.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred cCCccccccchhhhccCCcceEEEecCcc
Confidence 7777764 45667777777777666654
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=1.4e-17 Score=171.27 Aligned_cols=182 Identities=20% Similarity=0.134 Sum_probs=105.5
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+++|++|+++++.++.+| .++.+++|++|++++|. +..+| ++.+++|++|++++|. +..++ ++++++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEEC
Confidence 367888888888888876 58888888888888876 56665 7778888888888865 33443 777788888888
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
++|.+..+| ++.+++|+.|++++|.... .+...+.....+....+...+. + .+..+++|+.|++++|++.. +|
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~-~-~~~~l~~L~~L~ls~n~l~~--l~ 186 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITK-L-DVTPQTQLTTLDCSFNKITE--LD 186 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCC-C-CCTTCTTCCEEECCSSCCCC--CC
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccc-c-ccccCCcCCEEECCCCccce--ec
Confidence 888777765 6777777777777776332 1222222222222222211110 1 23444445555555554432 33
Q ss_pred CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCc
Q 012027 161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDC 200 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c 200 (472)
++.+++|+.|++++|+++.++ +..+++|+.|++++|
T Consensus 187 --l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSN 222 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSS
T ss_pred --cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCC
Confidence 344444444444444444432 344444444444443
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=2.4e-18 Score=183.06 Aligned_cols=107 Identities=17% Similarity=0.074 Sum_probs=77.4
Q ss_pred CCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 2 ECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+++++|+|++|.|+.+ |..|+.+++|++|+|++|......|..+.++++|++|++++|......|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 3577788888887766 445777888888888877644445667777888888888877665556777777777777777
Q ss_pred eCccCCCC-CccccCCCCCcEEEecCCCC
Q 012027 81 SGTAIRCP-PSSIFLMKNLKTLSFRGCNG 108 (472)
Q Consensus 81 ~~~~i~~l-p~~i~~l~~L~~L~L~~~~~ 108 (472)
++|.+..+ |..++++++|++|++++|..
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcc
Confidence 77777765 45667777777777777653
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=3.7e-18 Score=175.46 Aligned_cols=165 Identities=22% Similarity=0.135 Sum_probs=104.2
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+++|++|+|++|.|+.++ ++.+++|++|++++|. +..+| ++.+++|++|++++|... .++ ++.+++|++|++
T Consensus 84 l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~-~l~--l~~l~~L~~L~l 155 (457)
T 3bz5_A 84 NTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDC 155 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCS-CCC--CTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccc-eec--cccCCcCCEEEC
Confidence 467888888888888775 7788888888888875 55565 677778888888776533 342 666777777777
Q ss_pred eCc-cCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCC
Q 012027 81 SGT-AIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAI 159 (472)
Q Consensus 81 ~~~-~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~l 159 (472)
++| .+..+ .++.+++|+.|++++|.... .+...+.....+....+.+... .+..+++|+.|++++|++.. +
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~--i 227 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE--I 227 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC--C
T ss_pred CCCCccccc--ccccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc--c
Confidence 776 34444 35666777777777665322 2233333333344444444432 25566677777777776653 5
Q ss_pred CCCCCCCCCCCEEEcCCCCCccCC
Q 012027 160 PSDIGNLHSLKTLYLSKNNFVTLP 183 (472)
Q Consensus 160 p~~l~~l~~L~~L~Ls~n~~~~lp 183 (472)
| ++.+++|+.|++++|.++.+|
T Consensus 228 p--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp C--CTTCTTCSEEECCSSCCSCCC
T ss_pred C--ccccCCCCEEEeeCCcCCCcC
Confidence 5 666677777777777666554
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=2.2e-18 Score=167.45 Aligned_cols=199 Identities=21% Similarity=0.123 Sum_probs=143.5
Q ss_pred CCCccEEEeeCCCCeec---cccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh--hhhCCCCCC
Q 012027 1 MECLRELLLDKTDIKEM---PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL--ETVGQVESL 75 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~l---p~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp--~~l~~l~~L 75 (472)
+++|++|+|++|.++.+ +..+..+++|++|++++|. +..+|..+..+++|++|++++|.. ..++ ..+..+++|
T Consensus 51 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L 128 (306)
T 2z66_A 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNL 128 (306)
T ss_dssp CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEE-ESSTTTTTTTTCTTC
T ss_pred cccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcc-cccccchhhhhccCC
Confidence 46788888888877754 5566778888888888865 566777777788888888887643 3333 367777888
Q ss_pred CEEeeeCccCCC-CCccccCCCCCcEEEecCCCCCC---CCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccC
Q 012027 76 EELDISGTAIRC-PPSSIFLMKNLKTLSFRGCNGPP---SSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSD 151 (472)
Q Consensus 76 ~~L~L~~~~i~~-lp~~i~~l~~L~~L~L~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~ 151 (472)
++|++++|.+.. .|..+..+++|+.|++++|.... +.....+.....+....+.+.......+..+++|+.|++++
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence 888888887774 45557777888888887775322 22233333444455555555554444588899999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEcCCCCCcc-CCcccCCCC-CcceeeccCccc
Q 012027 152 CGLGEGAIPSDIGNLHSLKTLYLSKNNFVT-LPASINCLF-NLEKLKLEDCKR 202 (472)
Q Consensus 152 ~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~-lp~~i~~l~-~L~~L~l~~c~~ 202 (472)
|.+.. ..+..+..+++|+.|+|++|.+.. .|..+..++ +|+.|++++|+.
T Consensus 209 N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 209 NNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp SCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CccCc-cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 99863 334468899999999999999985 566788884 999999999863
No 44
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.6e-17 Score=157.14 Aligned_cols=190 Identities=23% Similarity=0.301 Sum_probs=151.3
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhh-hhCCCCCCCEEee
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLE-TVGQVESLEELDI 80 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L 80 (472)
+++.++++++.++.+|..+. ++|+.|+|++|. +..+|. .+.++++|++|++++|.. ..+|. .+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEEC
Confidence 46789999999999997664 789999999987 566664 789999999999999764 45554 4688999999999
Q ss_pred eCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCC
Q 012027 81 SGTAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAI 159 (472)
Q Consensus 81 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~l 159 (472)
++|.+..+|.. +..+++|+.|++++|..... ....+..+++|+.|++++|.+.. +
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~Ls~n~l~~--~ 148 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSL----------------------PPRVFDSLTKLTYLSLGYNELQS--L 148 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC----------------------CTTTTTTCTTCCEEECCSSCCCC--C
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCee----------------------CHHHhCcCcCCCEEECCCCcCCc--c
Confidence 99999988754 57899999999999863221 11226788999999999999863 5
Q ss_pred CC-CCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCC--C--CCCccEEEEccC
Q 012027 160 PS-DIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQ--L--PPNVEKVRVNGC 221 (472)
Q Consensus 160 p~-~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~--l--p~~L~~L~~~~c 221 (472)
|. .++.+++|+.|+|++|.++.+|. .+..+++|+.|++++|+ ++.+|. + .++|+.|++.++
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCC
Confidence 54 48899999999999999998876 47889999999999984 455553 1 246777777664
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=6.2e-18 Score=173.61 Aligned_cols=194 Identities=24% Similarity=0.281 Sum_probs=158.8
Q ss_pred CCCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027 1 MECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL 78 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (472)
|++|++|+|++|.|+.++ ..+..+++|++|+|++|. +..+|. .+..+++|++|+|++|......+..+.++++|++|
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 578999999999999886 568999999999999987 666665 48889999999999987554444578999999999
Q ss_pred eeeC-ccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027 79 DISG-TAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE 156 (472)
Q Consensus 79 ~L~~-~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~ 156 (472)
++++ +.+..++. .+..+++|+.|++++|... .+|.+..+++|+.|+|++|.+.
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~------------------------~~~~~~~l~~L~~L~Ls~N~l~- 231 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK------------------------DMPNLTPLVGLEELEMSGNHFP- 231 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS------------------------SCCCCTTCTTCCEEECTTSCCS-
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCccc------------------------ccccccccccccEEECcCCcCc-
Confidence 9999 56666665 5889999999999998632 2456788899999999999996
Q ss_pred CCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC-C---CCCccEEEEccC
Q 012027 157 GAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ-L---PPNVEKVRVNGC 221 (472)
Q Consensus 157 ~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~-l---p~~L~~L~~~~c 221 (472)
+..|..+..+++|+.|+|++|.+..+ |..+..+++|+.|+|++|+ +..+|. . .++|+.|+++++
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSS
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCC
Confidence 45577899999999999999999865 5678999999999999985 455543 1 246677776664
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=2e-18 Score=183.59 Aligned_cols=222 Identities=17% Similarity=0.114 Sum_probs=114.7
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchh-----------------
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFEN----------------- 64 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~----------------- 64 (472)
++|+.|+++++.+..+| .+..+++|+.|++++|.. +.+|. + .+++|++|++++|.....
T Consensus 285 ~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360 (606)
T ss_dssp TTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS
T ss_pred CCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccchhhccCCCCCEEECcCC
Confidence 45666666666666666 466666666666666653 55552 3 455555555555433222
Q ss_pred -------hhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCC---CCCCCcchhhhcccCCCCcCC
Q 012027 65 -------LLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA---SCYLPFPINLMRRSSDLGALM 134 (472)
Q Consensus 65 -------lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 134 (472)
+|..++.+++|++|++++|.+..+|..+..+++|+.|++++|......+ ...+.....+....+......
T Consensus 361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence 2455555566666666666555555556666666666666654222211 112222222333333333323
Q ss_pred CCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCCC---C
Q 012027 135 LPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQL---P 210 (472)
Q Consensus 135 l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~l---p 210 (472)
...+..+++|+.|++++|.+....+|..++.+++|+.|+|++|.++.+ |..+..+++|+.|++++|+.....|.. .
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 520 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence 333555566666666666554223455566666666666666665533 344556666666666665433332321 1
Q ss_pred CCccEEEEccCCCccccc
Q 012027 211 PNVEKVRVNGCASLVTLL 228 (472)
Q Consensus 211 ~~L~~L~~~~c~sL~~~~ 228 (472)
++|+.|++++|. ++.++
T Consensus 521 ~~L~~L~l~~N~-l~~~p 537 (606)
T 3vq2_A 521 YSLSTLDCSFNR-IETSK 537 (606)
T ss_dssp TTCCEEECTTSC-CCCEE
T ss_pred CcCCEEECCCCc-CcccC
Confidence 355566665553 44443
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=2.7e-18 Score=167.64 Aligned_cols=195 Identities=22% Similarity=0.262 Sum_probs=147.4
Q ss_pred CCCccEEEeeCCCCe-eccccc--cCCcCCcEEEeecCcCCCccCcccCCC-----CCCCEEEccCCCCchhhhhhhCCC
Q 012027 1 MECLRELLLDKTDIK-EMPLSI--ELLSGLVQLTLKGCKNLVRLPSNINSL-----KSLKTLNLLGCFKFENLLETVGQV 72 (472)
Q Consensus 1 l~~L~~L~L~~~~l~-~lp~si--~~L~~L~~L~L~~c~~l~~lp~~i~~L-----~~L~~L~Ls~c~~l~~lp~~l~~l 72 (472)
+++|++|+|++|.++ .+|..+ +.+++|++|+|++|. +..+|..+..+ ++|++|++++|......|..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 468999999999998 678776 899999999999987 55558777776 899999999988766666899999
Q ss_pred CCCCEEeeeCccCCC---CCccc--cCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCC-C-CCCCCCcC
Q 012027 73 ESLEELDISGTAIRC---PPSSI--FLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLP-S-LSGLGSLT 145 (472)
Q Consensus 73 ~~L~~L~L~~~~i~~---lp~~i--~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~-l~~l~~L~ 145 (472)
++|++|++++|.+.. +|..+ ..+++|+.|++++|...... ..+ . +..+++|+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS---------------------GVCSALAAARVQLQ 231 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH---------------------HHHHHHHHTTCCCS
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH---------------------HHHHHHHhcCCCCC
Confidence 999999999998763 34455 88999999999998632100 001 1 24567888
Q ss_pred EEeccCCCCCCCCCC-CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCC--CCccEEEEccC
Q 012027 146 KLDLSDCGLGEGAIP-SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLP--PNVEKVRVNGC 221 (472)
Q Consensus 146 ~L~L~~~~l~~~~lp-~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp--~~L~~L~~~~c 221 (472)
.|++++|.+.. ..| ..+..+++|+.|+|++|.++.+|..+. ++|+.|++++|+ ++.+|.+. ++|+.|++.+.
T Consensus 232 ~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 232 GLDLSHNSLRD-AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp EEECTTSCCCS-SCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTC
T ss_pred EEECCCCcCCc-ccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC-CCCChhHhhCCCCCEEeccCC
Confidence 88888888863 333 446667888888888888888888776 888888888875 44455421 34555665543
No 48
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=1.5e-17 Score=156.99 Aligned_cols=174 Identities=18% Similarity=0.186 Sum_probs=141.0
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
+.++++++++.++.+|..+. ++|+.|+|++|......|..+.++++|++|+|++|......+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 46789999999999998665 6899999999875554555788999999999999876665667788999999999999
Q ss_pred ccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCC
Q 012027 83 TAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 83 ~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
|.+..+|. .+..+++|+.|++++|.... ..+. +..+++|+.|+|++|.+.. ..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------~~~~~~~~l~~L~~L~Ls~N~l~~-~~~ 148 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKS-----------------------LPSGVFDRLTKLKELRLNTNQLQS-IPA 148 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCC-----------------------cChhHhccCCcccEEECcCCcCCc-cCH
Confidence 99998774 46789999999999886322 1222 6778899999999999863 333
Q ss_pred CCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccc
Q 012027 161 SDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKR 202 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~ 202 (472)
..++.+++|+.|+|++|.++.+|. .+..+++|+.|++++|+.
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 468899999999999999998775 678889999999998863
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=3.9e-18 Score=166.42 Aligned_cols=202 Identities=19% Similarity=0.202 Sum_probs=157.3
Q ss_pred ccEEEeeCCCCe--ecccccc-------CCcCCcEEEeecCcCCCccCccc--CCCCCCCEEEccCCCCchhhhhhhCCC
Q 012027 4 LRELLLDKTDIK--EMPLSIE-------LLSGLVQLTLKGCKNLVRLPSNI--NSLKSLKTLNLLGCFKFENLLETVGQV 72 (472)
Q Consensus 4 L~~L~L~~~~l~--~lp~si~-------~L~~L~~L~L~~c~~l~~lp~~i--~~L~~L~~L~Ls~c~~l~~lp~~l~~l 72 (472)
|+.|+|+++.+. .+|..+. .+++|++|+|++|.....+|..+ ..+++|++|++++|...+. |..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 677889988886 4666565 79999999999998666889876 8999999999999875544 7777766
Q ss_pred -----CCCCEEeeeCccCCCCC-ccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC--CCCCCCc
Q 012027 73 -----ESLEELDISGTAIRCPP-SSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS--LSGLGSL 144 (472)
Q Consensus 73 -----~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~--l~~l~~L 144 (472)
++|++|++++|.+..++ ..++++++|+.|++++|....... .++. +..+++|
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------~~~~~~~~~l~~L 203 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--------------------LISALCPLKFPTL 203 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--------------------HHHHSCTTSCTTC
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--------------------HHHHHHhccCCCC
Confidence 99999999999999876 789999999999999987321000 0111 3678899
Q ss_pred CEEeccCCCCCCC-CCC-CCCCCCCCCCEEEcCCCCCccCC--cccCCCCCcceeeccCccccccCCC-CCCCccEEEEc
Q 012027 145 TKLDLSDCGLGEG-AIP-SDIGNLHSLKTLYLSKNNFVTLP--ASINCLFNLEKLKLEDCKRLQSLPQ-LPPNVEKVRVN 219 (472)
Q Consensus 145 ~~L~L~~~~l~~~-~lp-~~l~~l~~L~~L~Ls~n~~~~lp--~~i~~l~~L~~L~l~~c~~L~~lp~-lp~~L~~L~~~ 219 (472)
++|++++|.+..- .++ ..+..+++|+.|+|++|.++..+ ..+..+++|+.|++++|.. +.+|. ++++|+.|+++
T Consensus 204 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls 282 (312)
T 1wwl_A 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLPAKLSVLDLS 282 (312)
T ss_dssp CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-SSCCSSCCSEEEEEECC
T ss_pred CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc-ChhhhhccCCceEEECC
Confidence 9999999998620 122 22357899999999999999755 4567789999999999874 46765 45689999998
Q ss_pred cCCCccccc
Q 012027 220 GCASLVTLL 228 (472)
Q Consensus 220 ~c~sL~~~~ 228 (472)
++ .++.++
T Consensus 283 ~N-~l~~~p 290 (312)
T 1wwl_A 283 YN-RLDRNP 290 (312)
T ss_dssp SS-CCCSCC
T ss_pred CC-CCCCCh
Confidence 87 455554
No 50
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.76 E-value=6.4e-18 Score=176.44 Aligned_cols=217 Identities=17% Similarity=0.148 Sum_probs=149.6
Q ss_pred CCCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCch-hhhhhhCCCCCCCEE
Q 012027 1 MECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE-NLLETVGQVESLEEL 78 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~-~lp~~l~~l~~L~~L 78 (472)
+++|++|+|++|.|+.+ |..++.+++|++|+|++|. +..+|.. .+++|++|++++|.... .+|..++++++|++|
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 56889999999988877 5678889999999999876 6678876 78888888888877554 467788888888888
Q ss_pred eeeCccCC--------------------------CCCccccCCC------------------------------------
Q 012027 79 DISGTAIR--------------------------CPPSSIFLMK------------------------------------ 96 (472)
Q Consensus 79 ~L~~~~i~--------------------------~lp~~i~~l~------------------------------------ 96 (472)
++++|.+. ..|..+..+.
T Consensus 121 ~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 200 (520)
T 2z7x_B 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200 (520)
T ss_dssp EEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred EecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence 88777653 1233333321
Q ss_pred -----------------------------------------------CCcEEEecCCCCCCCCCCCC-------CCcchh
Q 012027 97 -----------------------------------------------NLKTLSFRGCNGPPSSASCY-------LPFPIN 122 (472)
Q Consensus 97 -----------------------------------------------~L~~L~L~~~~~~~~~~~~~-------~~~~~~ 122 (472)
+|+.|++++|......+... +.....
T Consensus 201 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~ 280 (520)
T 2z7x_B 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280 (520)
T ss_dssp CSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred ccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEe
Confidence 45555655554221222111 111111
Q ss_pred h--------------------------hcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCC
Q 012027 123 L--------------------------MRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSK 176 (472)
Q Consensus 123 l--------------------------~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~ 176 (472)
+ ....+.+.. .+....+++|++|++++|.+. +.+|..++.+++|+.|+|++
T Consensus 281 l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~ 357 (520)
T 2z7x_B 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH--MLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQM 357 (520)
T ss_dssp EEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC--CCCCSSCCCCCEEECCSSCCC-TTTTTTCCCCSSCCEEECCS
T ss_pred ccccccceecchhhhhcccccCceeEEEcCCCcccc--ccchhhCCcccEEEeECCccC-hhhhhhhccCCCCCEEEccC
Confidence 1 111111111 111267889999999999987 56788899999999999999
Q ss_pred CCCcc---CCcccCCCCCcceeeccCccccccCCC----CCCCccEEEEccCCC
Q 012027 177 NNFVT---LPASINCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGCAS 223 (472)
Q Consensus 177 n~~~~---lp~~i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c~s 223 (472)
|+++. +|..+..+++|+.|++++|.....+|. ..++|+.|++++|.-
T Consensus 358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred CccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence 99984 556789999999999999886654553 236889999988853
No 51
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=1.1e-17 Score=163.10 Aligned_cols=168 Identities=23% Similarity=0.307 Sum_probs=147.3
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+++|++|+|++|.+..+++ +..+++|++|+|++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++
T Consensus 62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYL 136 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEEC
Confidence 5789999999999999988 9999999999999987 77776 48899999999999986 445665 899999999999
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
++|.+..++. +..+++|+.|++++|.... ++.+..+++|+.|++++|.+.+ ++
T Consensus 137 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~------------------------~~~l~~l~~L~~L~l~~n~l~~--~~ 189 (308)
T 1h6u_A 137 DLNQITNISP-LAGLTNLQYLSIGNAQVSD------------------------LTPLANLSKLTTLKADDNKISD--IS 189 (308)
T ss_dssp CSSCCCCCGG-GGGCTTCCEEECCSSCCCC------------------------CGGGTTCTTCCEEECCSSCCCC--CG
T ss_pred CCCccCcCcc-ccCCCCccEEEccCCcCCC------------------------ChhhcCCCCCCEEECCCCccCc--Ch
Confidence 9999998887 8899999999999986322 2237788999999999999964 55
Q ss_pred CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccc
Q 012027 161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKR 202 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~ 202 (472)
. +..+++|+.|+|++|.++.++ .+..+++|+.|++++|+.
T Consensus 190 ~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp G-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred h-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence 4 889999999999999999888 489999999999999873
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=178.93 Aligned_cols=193 Identities=24% Similarity=0.248 Sum_probs=106.4
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhh----------------
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENL---------------- 65 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~l---------------- 65 (472)
++|++|+++++.+..+|..+..+ +|+.|++++|. +..+|. ..+++|++|++++|.....+
T Consensus 282 ~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357 (570)
T ss_dssp TTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred CcccEEEecCccchhhhhhhccC-CccEEeeccCc-ccccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence 57888888888888888877777 88888888776 446664 23444444444444333222
Q ss_pred --------hhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCC-C
Q 012027 66 --------LETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALML-P 136 (472)
Q Consensus 66 --------p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~ 136 (472)
|..+..+++|++|++++|.+..+|..+..+++|+.|++++|.. ..... .
T Consensus 358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l----------------------~~~~~~~ 415 (570)
T 2z63_A 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL----------------------KQMSEFS 415 (570)
T ss_dssp CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE----------------------ESCTTSC
T ss_pred ccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcc----------------------ccccchh
Confidence 3444455555555555555555444455555555555555442 21111 1
Q ss_pred CCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--cCCcccCCCCCcceeeccCccccccCCCC---CC
Q 012027 137 SLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV--TLPASINCLFNLEKLKLEDCKRLQSLPQL---PP 211 (472)
Q Consensus 137 ~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~--~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~ 211 (472)
.+..+++|+.|++++|.+. +..|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|+.....|.. .+
T Consensus 416 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp TTTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhcCCCCCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 2455555666666665554 334555555566666666666554 35555555666666666655433332321 13
Q ss_pred CccEEEEccC
Q 012027 212 NVEKVRVNGC 221 (472)
Q Consensus 212 ~L~~L~~~~c 221 (472)
+|+.|++.+|
T Consensus 495 ~L~~L~l~~n 504 (570)
T 2z63_A 495 SLQVLNMASN 504 (570)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEeCCCC
Confidence 5555555554
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=1.7e-17 Score=158.64 Aligned_cols=178 Identities=19% Similarity=0.205 Sum_probs=147.6
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD 79 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (472)
+++|++|+|++|.+..++ .++.+++|++|++++|. +..+|. .+.++++|++|++++|......+..++.+++|++|+
T Consensus 62 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 578999999999999876 69999999999999987 555554 578999999999999876655556689999999999
Q ss_pred eeCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCC
Q 012027 80 ISGTAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEG 157 (472)
Q Consensus 80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~ 157 (472)
+++|.+..+|.. +..+++|+.|++++|.... ..+. +..+++|+.|++++|.+. +
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~-~ 195 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-----------------------LPEGVFDKLTQLKDLRLYQNQLK-S 195 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCS-C
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCc-----------------------cCHHHhcCCccCCEEECCCCcCC-c
Confidence 999999988765 5889999999999986322 1222 678899999999999997 4
Q ss_pred CCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCC
Q 012027 158 AIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLP 210 (472)
Q Consensus 158 ~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp 210 (472)
..|..++.+++|+.|+|++|.+. +.+++|+.|++..|.....+|...
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred cCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcc
Confidence 45566899999999999999876 346689999999888777776544
No 54
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=3e-17 Score=173.16 Aligned_cols=215 Identities=16% Similarity=0.090 Sum_probs=152.4
Q ss_pred CCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 2 ECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
++|++|+|++|.|+.++ ..++.+++|++|+|++|......|..+.++++|++|++++|. +..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEEC
Confidence 46888888888888776 468888888888888876333336678888888888888865 4567776 7888888888
Q ss_pred eCccCCCCC--ccccCCCCCcEEEecCCCCCCCCCCCCCCcc--------------------------------------
Q 012027 81 SGTAIRCPP--SSIFLMKNLKTLSFRGCNGPPSSASCYLPFP-------------------------------------- 120 (472)
Q Consensus 81 ~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~-------------------------------------- 120 (472)
++|.+..+| ..++++++|++|++++|..... ....+...
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC-chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 888888654 6788888888888887753211 00000000
Q ss_pred -----------------------------------------------------------------------hhhhcccCC
Q 012027 121 -----------------------------------------------------------------------INLMRRSSD 129 (472)
Q Consensus 121 -----------------------------------------------------------------------~~l~~~~~~ 129 (472)
..+....+.
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence 000000011
Q ss_pred CCcCCCCC-C-----------------------------------------------------CCCCCcCEEeccCCCCC
Q 012027 130 LGALMLPS-L-----------------------------------------------------SGLGSLTKLDLSDCGLG 155 (472)
Q Consensus 130 ~~~~~l~~-l-----------------------------------------------------~~l~~L~~L~L~~~~l~ 155 (472)
+.+ .+|. + ..+++|++|++++|.+.
T Consensus 288 l~~-~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~ 366 (562)
T 3a79_B 288 ITE-RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366 (562)
T ss_dssp ECS-CCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC
T ss_pred eec-cccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccc
Confidence 111 1111 1 57789999999999997
Q ss_pred CCCCCCCCCCCCCCCEEEcCCCCCccCC---cccCCCCCcceeeccCccccccCCC----CCCCccEEEEccCC
Q 012027 156 EGAIPSDIGNLHSLKTLYLSKNNFVTLP---ASINCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGCA 222 (472)
Q Consensus 156 ~~~lp~~l~~l~~L~~L~Ls~n~~~~lp---~~i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c~ 222 (472)
+.+|..++.+++|+.|+|++|.++.+| ..+..+++|+.|++++|.....+|. ..++|+.|++++|.
T Consensus 367 -~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 367 -DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp -TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred -cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 568888999999999999999998655 5688999999999999986554654 23688889988875
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=1.1e-16 Score=169.83 Aligned_cols=203 Identities=24% Similarity=0.268 Sum_probs=101.8
Q ss_pred ccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027 4 LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT 83 (472)
Q Consensus 4 L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 83 (472)
++.|+++++.|+.+|..+. ++|++|+|++|. +..+|. .+++|++|+|++|. +..+|. .+++|++|++++|
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSC
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCC
Confidence 5556666666666655443 556666666554 445554 34555566665543 334444 3455555555555
Q ss_pred cCCCCCcccc-----------------CCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCE
Q 012027 84 AIRCPPSSIF-----------------LMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTK 146 (472)
Q Consensus 84 ~i~~lp~~i~-----------------~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~ 146 (472)
.+..+|..+. .+++|++|++++|.... .+. .......+....+.+.. +| ..+++|+.
T Consensus 112 ~l~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~-~~~~L~~L~L~~N~l~~--l~--~~~~~L~~ 185 (622)
T 3g06_A 112 PLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPA-LPSELCKLWAYNNQLTS--LP--MLPSGLQE 185 (622)
T ss_dssp CCCCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSC--CC--CCCTTCCE
T ss_pred cCCCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCC-cCC-ccCCCCEEECCCCCCCC--Cc--ccCCCCcE
Confidence 5555444100 12455555555554221 110 11111112222222221 11 22355666
Q ss_pred EeccCCCCCCCCCCCCCC-----------------CCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC
Q 012027 147 LDLSDCGLGEGAIPSDIG-----------------NLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL 209 (472)
Q Consensus 147 L~L~~~~l~~~~lp~~l~-----------------~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l 209 (472)
|++++|.+.. +|..+. .+++|+.|+|++|.++.+| ..+++|+.|++++| .+..+|..
T Consensus 186 L~Ls~N~l~~--l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~ 259 (622)
T 3g06_A 186 LSVSDNQLAS--LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPML 259 (622)
T ss_dssp EECCSSCCSC--CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCC
T ss_pred EECCCCCCCC--CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCcc
Confidence 6666666542 333221 1255666666666666666 34566777777776 45566666
Q ss_pred CCCccEEEEccCCCcccccc
Q 012027 210 PPNVEKVRVNGCASLVTLLG 229 (472)
Q Consensus 210 p~~L~~L~~~~c~sL~~~~~ 229 (472)
+++|+.|++++| .+..++.
T Consensus 260 ~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 260 PSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp CTTCCEEECCSS-CCCSCCG
T ss_pred cccCcEEeCCCC-CCCcCCH
Confidence 677777777766 4555543
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=9.8e-18 Score=176.09 Aligned_cols=198 Identities=19% Similarity=0.197 Sum_probs=145.6
Q ss_pred CCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 2 ECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
++|++|+|++|.++.+ |..++.+++|++|++++|......|..+.++++|++|++++|...+..|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 4788999999988877 456888999999999988744444467888999999999988766555666888999999999
Q ss_pred eCccCCC--CCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCC
Q 012027 81 SGTAIRC--PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA 158 (472)
Q Consensus 81 ~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~ 158 (472)
++|.+.. .|..++++++|+.|++++|...... ....+.++++|++|++++|.+. +.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~---------------------~~~~~~~l~~L~~L~L~~n~l~-~~ 163 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI---------------------RRIDFAGLTSLNELEIKALSLR-NY 163 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE---------------------CTTTTTTCCEEEEEEEEETTCC-EE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCcccccc---------------------CHhhhhcccccCeeeccCCccc-cc
Confidence 9998884 4677888999999999887632210 1123677788888888888876 55
Q ss_pred CCCCCCCCCCCCEEEcCCCCCccCCccc-CCCCCcceeeccCcccccc------CCCCCCCccEEEEccC
Q 012027 159 IPSDIGNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCKRLQS------LPQLPPNVEKVRVNGC 221 (472)
Q Consensus 159 lp~~l~~l~~L~~L~Ls~n~~~~lp~~i-~~l~~L~~L~l~~c~~L~~------lp~lp~~L~~L~~~~c 221 (472)
+|..++.+++|+.|++++|.+..+|..+ ..+++|+.|++++|..-.. +....++|+.|++.++
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 7778888888888888888877776654 4578888888888764331 1223456666666554
No 57
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=3.7e-18 Score=166.45 Aligned_cols=211 Identities=19% Similarity=0.182 Sum_probs=117.2
Q ss_pred ccEEEeeCCCCee--ccc--cccCCcCCcEEEeecCcCCCccCccc--CCCCCCCEEEccCCCCchhhh----hhhCCCC
Q 012027 4 LRELLLDKTDIKE--MPL--SIELLSGLVQLTLKGCKNLVRLPSNI--NSLKSLKTLNLLGCFKFENLL----ETVGQVE 73 (472)
Q Consensus 4 L~~L~L~~~~l~~--lp~--si~~L~~L~~L~L~~c~~l~~lp~~i--~~L~~L~~L~Ls~c~~l~~lp----~~l~~l~ 73 (472)
++.|.+.++.+.. +.. .+..+++|++|++++|......|..+ ..+++|++|++++|......+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 4666666665541 111 12234567777777777555666666 677777777777776554332 3345677
Q ss_pred CCCEEeeeCccCCCCC-ccccCCCCCcEEEecCCCCCC------CCCCCCCCcchhhhcccCCCCcCCCCC-----CCCC
Q 012027 74 SLEELDISGTAIRCPP-SSIFLMKNLKTLSFRGCNGPP------SSASCYLPFPINLMRRSSDLGALMLPS-----LSGL 141 (472)
Q Consensus 74 ~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~l~~-----l~~l 141 (472)
+|++|++++|.+..++ ..++.+++|++|++++|.... ......++....+....+.+.. ++. +..+
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~~l 223 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET--PTGVCAALAAAG 223 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC--HHHHHHHHHHHT
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc--hHHHHHHHHhcC
Confidence 7777777777777554 566777777777777776321 0000112222222222222211 111 2345
Q ss_pred CCcCEEeccCCCCCCCCCCCCCCCC---CCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC--CCCCccEE
Q 012027 142 GSLTKLDLSDCGLGEGAIPSDIGNL---HSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ--LPPNVEKV 216 (472)
Q Consensus 142 ~~L~~L~L~~~~l~~~~lp~~l~~l---~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~--lp~~L~~L 216 (472)
++|++|+|++|.+. +..|..++.+ ++|++|+|++|.++.+|..+. ++|+.|++++|+. ..+|. -.++|+.|
T Consensus 224 ~~L~~L~Ls~N~l~-~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l-~~~~~~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLR-ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRL-NRAPQPDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCC-CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCC-CSCCCTTSCCCCSCE
T ss_pred CCCCEEECCCCCCC-ccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcC-CCCchhhhCCCccEE
Confidence 66777777777665 3345555554 567777777777776666553 6677777766643 22222 22345555
Q ss_pred EEcc
Q 012027 217 RVNG 220 (472)
Q Consensus 217 ~~~~ 220 (472)
++++
T Consensus 300 ~L~~ 303 (310)
T 4glp_A 300 TLDG 303 (310)
T ss_dssp ECSS
T ss_pred ECcC
Confidence 5444
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=5.7e-18 Score=173.94 Aligned_cols=208 Identities=22% Similarity=0.245 Sum_probs=148.9
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCC-------------CEEEccCCCCchhhhhh
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSL-------------KTLNLLGCFKFENLLET 68 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L-------------~~L~Ls~c~~l~~lp~~ 68 (472)
.+|++|+++++.+.++|.+|++|++|++|++++|...+.+|.+++++++| ++|++++|. +..+|..
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC
Confidence 57899999999999999999999999999999998777899999998875 999999976 5667763
Q ss_pred hCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEe
Q 012027 69 VGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLD 148 (472)
Q Consensus 69 l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~ 148 (472)
.++|++|++++|.++.+|.. +++|+.|++++|..... +. .......+....+.+.. +|.+..+++|++|+
T Consensus 90 ---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l-~~-~~~~L~~L~L~~n~l~~--lp~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKAL-SD-LPPLLEYLGVSNNQLEK--LPELQNSSFLKIID 159 (454)
T ss_dssp ---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC-CS-CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEE
T ss_pred ---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcc-cC-CCCCCCEEECcCCCCCC--CcccCCCCCCCEEE
Confidence 47899999999999999864 48899999999864321 11 11233345555565554 56799999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCCCCccEEEEccCCCccccc
Q 012027 149 LSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLL 228 (472)
Q Consensus 149 L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c~sL~~~~ 228 (472)
+++|.+.. +|..+ .+|++|++++|.++.+| .++.+++|+.|++++|. +..+|..+++|+.|++.+| .+..++
T Consensus 160 l~~N~l~~--lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n-~l~~lp 231 (454)
T 1jl5_A 160 VDNNSLKK--LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNN-ILEELP 231 (454)
T ss_dssp CCSSCCSC--CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSS-CCSSCC
T ss_pred CCCCcCcc--cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCC-cCCccc
Confidence 99999863 77654 58999999999999998 69999999999999986 5568888899999999988 455554
No 59
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.6e-17 Score=160.46 Aligned_cols=166 Identities=27% Similarity=0.373 Sum_probs=112.6
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
++|+.|+++++.+..++. ++.+++|++|++++|. +..++. +.++++|++|++++|. +..+|. ++.+++|++|+++
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECT
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECC
Confidence 467777777777777654 7777777777777765 555555 6777777777777764 334443 6777777777777
Q ss_pred CccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCC
Q 012027 82 GTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPS 161 (472)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~ 161 (472)
+|.+..++ .+..+++|+.|++++|.... ++.+..+++|+.|++++|.+.+ ++.
T Consensus 121 ~n~i~~~~-~l~~l~~L~~L~l~~n~l~~------------------------~~~l~~l~~L~~L~L~~N~l~~--~~~ 173 (291)
T 1h6t_A 121 HNGISDIN-GLVHLPQLESLYLGNNKITD------------------------ITVLSRLTKLDTLSLEDNQISD--IVP 173 (291)
T ss_dssp TSCCCCCG-GGGGCTTCCEEECCSSCCCC------------------------CGGGGGCTTCSEEECCSSCCCC--CGG
T ss_pred CCcCCCCh-hhcCCCCCCEEEccCCcCCc------------------------chhhccCCCCCEEEccCCcccc--chh
Confidence 77777663 46677777777777765221 2335566777777777777753 333
Q ss_pred CCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcc
Q 012027 162 DIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCK 201 (472)
Q Consensus 162 ~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~ 201 (472)
+..+++|+.|+|++|.++.+|. +..+++|+.|++++|+
T Consensus 174 -l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred -hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 6777777777777777777763 6777777777777765
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1.2e-17 Score=159.92 Aligned_cols=178 Identities=22% Similarity=0.211 Sum_probs=144.2
Q ss_pred CCCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027 1 MECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD 79 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (472)
+++|++|+|++|.+..++. .++.+++|++|+|++|......|..+.++++|++|++++|......+..++.+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 5789999999999998876 689999999999999874444446789999999999999876554455789999999999
Q ss_pred eeCccCCC--CCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCC---CCCcC-EEeccCCC
Q 012027 80 ISGTAIRC--PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSG---LGSLT-KLDLSDCG 153 (472)
Q Consensus 80 L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~---l~~L~-~L~L~~~~ 153 (472)
+++|.+.. +|..+..+++|+.|++++|..... ....+.. ++.|. .|++++|.
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~----------------------~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI----------------------YCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE----------------------CGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCCCcC----------------------CHHHhhhhhhccccceeeecCCCc
Confidence 99999986 689999999999999999873221 0111223 33343 89999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEcCCCCCccCCcc-cCCCCCcceeeccCccc
Q 012027 154 LGEGAIPSDIGNLHSLKTLYLSKNNFVTLPAS-INCLFNLEKLKLEDCKR 202 (472)
Q Consensus 154 l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~-i~~l~~L~~L~l~~c~~ 202 (472)
+.. ++.......+|+.|+|++|.++.+|.. +..+++|+.|++++|+.
T Consensus 189 l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 189 MNF--IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCE--ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred ccc--cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 863 666655566899999999999988875 58899999999999863
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=5.4e-17 Score=179.35 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=51.1
Q ss_pred CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC----CCCC
Q 012027 138 LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ----LPPN 212 (472)
Q Consensus 138 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~----lp~~ 212 (472)
+..+++|+.|+|++|++. +..|..+..+++|++|+|++|.+..+ |..+..+++|+.|++++|. +..++. -.++
T Consensus 286 ~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEK 363 (844)
T ss_dssp SSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCC
T ss_pred hhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCC
Confidence 455666677777766664 33455667777777777777777654 5566777777777777764 333332 1246
Q ss_pred ccEEEEccC
Q 012027 213 VEKVRVNGC 221 (472)
Q Consensus 213 L~~L~~~~c 221 (472)
|+.|++.++
T Consensus 364 L~~L~Ls~N 372 (844)
T 3j0a_A 364 LQTLDLRDN 372 (844)
T ss_dssp CCEEEEETC
T ss_pred CCEEECCCC
Confidence 667776664
No 62
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.74 E-value=1.3e-17 Score=175.85 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=89.8
Q ss_pred ccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 4 LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 4 L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
.+++++++++++.+|..+. ++|+.|+|++|. +..+| ..+.++++|++|++++|......|..++++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 4789999999999998664 899999999988 55554 6899999999999999876665688899999999999999
Q ss_pred ccCCCCCccccCCCCCcEEEecCCCCCC
Q 012027 83 TAIRCPPSSIFLMKNLKTLSFRGCNGPP 110 (472)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~ 110 (472)
|.++.+|.. .+++|++|++++|....
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~ 135 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDFDV 135 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCCSB
T ss_pred CcCCccCcc--ccccCCEEECCCCCccc
Confidence 999999987 89999999999998543
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=5.7e-17 Score=167.07 Aligned_cols=84 Identities=14% Similarity=0.330 Sum_probs=47.5
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+++|++|+|++|.++.+++ ++.+++|++|++++|. +..++. +.++++|++|++++|. +..++. +.++++|++|++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLEL 141 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEE
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEEC
Confidence 3456666666666665555 6666666666666654 344444 5566666666666653 333333 555666666666
Q ss_pred eCccCCCCC
Q 012027 81 SGTAIRCPP 89 (472)
Q Consensus 81 ~~~~i~~lp 89 (472)
++|.+..++
T Consensus 142 ~~n~l~~~~ 150 (466)
T 1o6v_A 142 SSNTISDIS 150 (466)
T ss_dssp EEEEECCCG
T ss_pred CCCccCCCh
Confidence 666555443
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=6e-18 Score=165.48 Aligned_cols=208 Identities=19% Similarity=0.195 Sum_probs=140.3
Q ss_pred CCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 2 ECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
++|++|+|++|.|+.++ ..++.+++|++|+|++|. +..+++ +..+++|++|++++|. +..++ ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCEEEC
Confidence 57899999999998776 468899999999999887 444554 8889999999999875 44444 2477888888
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCC-CCCCCcCEEeccCCCCCCC
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSL-SGLGSLTKLDLSDCGLGEG 157 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l-~~l~~L~~L~L~~~~l~~~ 157 (472)
++|.+..++.. .+++|+.|++++|......+ ...+.....+....+.+.......+ ..+++|++|++++|.+..
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~- 183 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD- 183 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-
T ss_pred CCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-
Confidence 88887766543 36778888888776433211 1122233334444444444333333 357788888888888753
Q ss_pred CCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCC
Q 012027 158 AIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCA 222 (472)
Q Consensus 158 ~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~ 222 (472)
++. ...+++|+.|+|++|.++.+|..+..+++|+.|++++|. ++.+|.. .++|+.|++.++.
T Consensus 184 -~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 184 -VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp -EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred -ccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence 443 334788888888888888887778888888888888874 4455542 2456666666553
No 65
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=1.2e-16 Score=172.29 Aligned_cols=195 Identities=23% Similarity=0.174 Sum_probs=91.0
Q ss_pred CCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEeeeCccCCCC-CccccCCCCCcEEEe
Q 012027 26 GLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDISGTAIRCP-PSSIFLMKNLKTLSF 103 (472)
Q Consensus 26 ~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L 103 (472)
+|+.|++++|+.....|..+..+++|++|++++|.....+| ..+..+++|++|++++|.+..+ +..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 45555555544333333444445555555555544333333 3444445555555555444422 233444444444444
Q ss_pred cCCCCC----CCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC---CCCC----CCCCCCCCCCEE
Q 012027 104 RGCNGP----PSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE---GAIP----SDIGNLHSLKTL 172 (472)
Q Consensus 104 ~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~---~~lp----~~l~~l~~L~~L 172 (472)
++|... .+..+..+.....+....+.+.......+.++++|+.|++++|.+.. ..+| ..++.+++|+.|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 444311 01111112222223333333332222225666666666666666542 0111 125666666666
Q ss_pred EcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCC----CCCccEEEEccC
Q 012027 173 YLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQL----PPNVEKVRVNGC 221 (472)
Q Consensus 173 ~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~l----p~~L~~L~~~~c 221 (472)
+|++|.++.+|. .+..+++|+.|++++|. ++.+|.- .++|+.|++.++
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred ECCCCCCCCCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCC
Confidence 666666666664 35666666666666653 3344431 145666666665
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=6.5e-17 Score=174.40 Aligned_cols=197 Identities=23% Similarity=0.204 Sum_probs=113.5
Q ss_pred CCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027 2 ECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD 79 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (472)
++|++|+|++|.+..+ |..++++++|++|+|++|. +..+|. .+.++++|++|++++|......|..++++++|++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 5677777777777755 4456777777777777765 555654 467777777777777654433345677777777777
Q ss_pred eeCccCCCC-CccccCCCCCcEEEecCCCCCCCCCC--C--CCCcchhhhccc---------------------------
Q 012027 80 ISGTAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSAS--C--YLPFPINLMRRS--------------------------- 127 (472)
Q Consensus 80 L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~--~--~~~~~~~l~~~~--------------------------- 127 (472)
+++|.+... |..++++++|+.|++++|......+. . .......+....
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence 777776644 44566677777777776642211110 0 001111111111
Q ss_pred ------------------------CCCCcCCCCCCCCCC--CcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcc
Q 012027 128 ------------------------SDLGALMLPSLSGLG--SLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVT 181 (472)
Q Consensus 128 ------------------------~~~~~~~l~~l~~l~--~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~ 181 (472)
+.+.......+..++ +|+.|++++|.+. +..|..++.+++|++|+|++|.+..
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSE
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCc
Confidence 111111111233333 3777777777665 3345567777777777777777663
Q ss_pred C-CcccCCCCCcceeeccCc
Q 012027 182 L-PASINCLFNLEKLKLEDC 200 (472)
Q Consensus 182 l-p~~i~~l~~L~~L~l~~c 200 (472)
+ |..+..+++|+.|++++|
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTC
T ss_pred cChhhhcCCCCccEEeccch
Confidence 3 445666666666666654
No 67
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=1.7e-16 Score=157.34 Aligned_cols=203 Identities=21% Similarity=0.186 Sum_probs=101.3
Q ss_pred CccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhh-hhhhCCCCCCCEEe
Q 012027 3 CLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENL-LETVGQVESLEELD 79 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~ 79 (472)
++++|+|++|+|+.+|+ .|+++++|++|+|++|+.++.+|. .+.++++|+++...++..+..+ |..+..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 44555555555555543 245555555555555544444443 2344444444333333333333 33444555555555
Q ss_pred eeCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCC-CCcCEEeccCCCCCCC
Q 012027 80 ISGTAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGL-GSLTKLDLSDCGLGEG 157 (472)
Q Consensus 80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l-~~L~~L~L~~~~l~~~ 157 (472)
+++|.+..+|.. .....++..|++.++..+... ....+..+ ..++.|++++|++.+
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l---------------------~~~~f~~~~~~l~~L~L~~N~i~~- 168 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI---------------------ERNSFVGLSFESVILWLNKNGIQE- 168 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE---------------------CTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccc---------------------cccchhhcchhhhhhccccccccC-
Confidence 555555544332 223334444444443322211 11123333 246666666666642
Q ss_pred CCCCCCCCCCCCCEEEcCC-CCCccCCcc-cCCCCCcceeeccCccccccCCC-CCCCccEEEEccCCCcccccc
Q 012027 158 AIPSDIGNLHSLKTLYLSK-NNFVTLPAS-INCLFNLEKLKLEDCKRLQSLPQ-LPPNVEKVRVNGCASLVTLLG 229 (472)
Q Consensus 158 ~lp~~l~~l~~L~~L~Ls~-n~~~~lp~~-i~~l~~L~~L~l~~c~~L~~lp~-lp~~L~~L~~~~c~sL~~~~~ 229 (472)
+|.......+|+.|++++ |.++.+|.. +..+++|+.|++++| +++.+|. ...+|+.|.+.+|.+|+.++.
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCC
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCC
Confidence 555555556666666653 456666643 466666777777666 3555543 345666666666666666654
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=6.4e-17 Score=151.44 Aligned_cols=173 Identities=17% Similarity=0.211 Sum_probs=142.2
Q ss_pred CCCccEEEeeCCC-Ceeccc-cccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCC-
Q 012027 1 MECLRELLLDKTD-IKEMPL-SIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLE- 76 (472)
Q Consensus 1 l~~L~~L~L~~~~-l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~- 76 (472)
+++|++|++++|. ++.+++ .++.+++|++|++++|..++.+|. .+.++++|++|++++|. +..+|. ++.+++|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~ 131 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDI 131 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCS
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-ccccccccc
Confidence 5789999999997 999886 589999999999999555778774 67889999999999986 455887 88899998
Q ss_pred --EEeeeCc-cCCCCCcc-ccCCCCCc-EEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEecc
Q 012027 77 --ELDISGT-AIRCPPSS-IFLMKNLK-TLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLS 150 (472)
Q Consensus 77 --~L~L~~~-~i~~lp~~-i~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~ 150 (472)
+|++++| .+..+|.. +..+++|+ .|++++|.... ..+. +.. ++|+.|+++
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-----------------------i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-----------------------VQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-----------------------ECTTTTTT-CEEEEEECT
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-----------------------cCHhhcCC-CCCCEEEcC
Confidence 9999999 99988764 88899999 99999886321 1112 333 789999999
Q ss_pred CCC-CCCCCCCCCCCCC-CCCCEEEcCCCCCccCCcccCCCCCcceeeccCccc
Q 012027 151 DCG-LGEGAIPSDIGNL-HSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKR 202 (472)
Q Consensus 151 ~~~-l~~~~lp~~l~~l-~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~ 202 (472)
+|. +.. .-+..+..+ ++|+.|+|++|+++.+|.. .+++|+.|++.++..
T Consensus 188 ~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 188 KNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CCCCccc-CCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 994 852 234568889 9999999999999999976 789999999998754
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=3.2e-16 Score=160.86 Aligned_cols=197 Identities=23% Similarity=0.273 Sum_probs=83.2
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
++|++|++++|.++.+|.. +++|++|++++|. +..+|.. .++|++|++++|.. ..+| .++++++|++|+++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCC-CCCc-ccCCCCCCCEEECC
Confidence 3566666666666665542 2445555555443 3333321 13445555544432 2244 24444445555554
Q ss_pred CccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCC
Q 012027 82 GTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPS 161 (472)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~ 161 (472)
+|.++.+|..+ .+|++|++++|..........+.....+....+.+.. +|.. .++|+.|++++|.+. .+|.
T Consensus 162 ~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~--l~~~--~~~L~~L~l~~n~l~--~lp~ 232 (454)
T 1jl5_A 162 NNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK--LPDL--PLSLESIVAGNNILE--ELPE 232 (454)
T ss_dssp SSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS--CCCC--CTTCCEEECCSSCCS--SCCC
T ss_pred CCcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc--CCCC--cCcccEEECcCCcCC--cccc
Confidence 44444444322 2444444444432211111111111122222222221 1111 124555555555443 2442
Q ss_pred CCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCCCCccEEEEccC
Q 012027 162 DIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGC 221 (472)
Q Consensus 162 ~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c 221 (472)
++.+++|+.|++++|.++.+|.. +++|+.|++++|. +..+|..+++|+.|++++|
T Consensus 233 -~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 233 -LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp -CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred -cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence 44555555555555555544432 2445555554443 3334444444455544443
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=8.4e-17 Score=168.99 Aligned_cols=189 Identities=20% Similarity=0.205 Sum_probs=145.1
Q ss_pred CCccEEEeeCCCCeeccccc-cCCcCCcEEEeecCcCCCccC---cccCCCCCCCEEEccCCCCchhhh---hhhCCCCC
Q 012027 2 ECLRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLP---SNINSLKSLKTLNLLGCFKFENLL---ETVGQVES 74 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si-~~L~~L~~L~L~~c~~l~~lp---~~i~~L~~L~~L~Ls~c~~l~~lp---~~l~~l~~ 74 (472)
++|++|++++|.+..+|..+ +.+++|++|++++|.....+| ..++.+++|++|++++|.. ..++ ..++.+++
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKN 388 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCTT
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhhcCCC
Confidence 46888999998888888876 579999999999988555554 3367889999999999754 3343 45888999
Q ss_pred CCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCC
Q 012027 75 LEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGL 154 (472)
Q Consensus 75 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l 154 (472)
|++|++++|.++.+|..+..+++|++|++++|.... ++. .-.++|+.|++++|++
T Consensus 389 L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~------------------------l~~-~~~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV------------------------VKT-CIPQTLEVLDVSNNNL 443 (549)
T ss_dssp CCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC------------------------CCT-TSCTTCSEEECCSSCC
T ss_pred CCEEECCCCCCccCChhhcccccccEEECCCCCccc------------------------ccc-hhcCCceEEECCCCCh
Confidence 999999999999999989999999999999887321 111 0125799999999988
Q ss_pred CCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC---CCCCccEEEEccCC
Q 012027 155 GEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ---LPPNVEKVRVNGCA 222 (472)
Q Consensus 155 ~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~---lp~~L~~L~~~~c~ 222 (472)
.. + ++.+++|++|+|++|+++.+|. ...+++|+.|++++|+.-...|+ -.++|+.|++++++
T Consensus 444 ~~--~---~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 444 DS--F---SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SC--C---CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred hh--h---cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 63 3 3578899999999999999997 56789999999999864433332 12567777777765
No 71
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=175.98 Aligned_cols=220 Identities=17% Similarity=0.085 Sum_probs=143.1
Q ss_pred CCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCcc-CcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027 2 ECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRL-PSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD 79 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (472)
++|++|+|++|.|+.+ |..++++++|++|+|++|.....+ |..+.++++|++|+|++|......|..++++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 5678888888888766 556788888888888887666666 56677788888888887766555577777777777777
Q ss_pred eeCccCCC-CCcc--ccCCCCCcEEEecCCCCCCCCC---CCCCCcchhhh--------------------------ccc
Q 012027 80 ISGTAIRC-PPSS--IFLMKNLKTLSFRGCNGPPSSA---SCYLPFPINLM--------------------------RRS 127 (472)
Q Consensus 80 L~~~~i~~-lp~~--i~~l~~L~~L~L~~~~~~~~~~---~~~~~~~~~l~--------------------------~~~ 127 (472)
|++|.+.. +|.. +.++++|+.|++++|......+ +..+.....+. ...
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 77777764 4443 6677777777777765332211 11222222122 222
Q ss_pred CCCCcCCCCCCCCCC------CcCEEeccCCCCCCCCCCCCC------------------------------------CC
Q 012027 128 SDLGALMLPSLSGLG------SLTKLDLSDCGLGEGAIPSDI------------------------------------GN 165 (472)
Q Consensus 128 ~~~~~~~l~~l~~l~------~L~~L~L~~~~l~~~~lp~~l------------------------------------~~ 165 (472)
+.+.......+..+. +|+.|++++|.+. +.++..+ ..
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT-VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS-TTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCc-hhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 222222222233333 3899999998764 2233221 11
Q ss_pred --CCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCC
Q 012027 166 --LHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCA 222 (472)
Q Consensus 166 --l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~ 222 (472)
.++|+.|+|++|.+..+ |..+..+++|+.|++++|..-...|.. .++|+.|+++++.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 26899999999998855 567899999999999998755444432 3588999988763
No 72
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=1.8e-16 Score=163.28 Aligned_cols=208 Identities=20% Similarity=0.301 Sum_probs=134.9
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+++|++|++. +.+..+++ ++.+++|++|++++|. +..++. +..+++|++|++++|......| ++.+++|++|++
T Consensus 155 l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 228 (466)
T 1o6v_A 155 LTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228 (466)
T ss_dssp CTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred CCcccEeecC-CcccCchh-hccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEEC
Confidence 4567777775 44444544 7777777777777765 455543 6667777777777765443333 556777777777
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
++|.+..++ .+..+++|+.|++++|......+...+.....+....+.+.. .+.+..+++|+.|++++|.+.. ++
T Consensus 229 ~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~L~~n~l~~--~~ 303 (466)
T 1o6v_A 229 NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 303 (466)
T ss_dssp CSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCSC--CG
T ss_pred CCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc--cccccCCCccCeEEcCCCcccC--ch
Confidence 777777664 466677777777777764433333333333334444444433 2336778888888888888753 43
Q ss_pred CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC--CCCccEEEEccCC
Q 012027 161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL--PPNVEKVRVNGCA 222 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~~c~ 222 (472)
. ++.+++|+.|+|++|.+..++. +..+++|+.|++++|+ +..++.+ .++|+.|++.+|.
T Consensus 304 ~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 304 P-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp G-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC
T ss_pred h-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCc
Confidence 3 7788888888888888887665 7788888888888874 4444432 2577888887774
No 73
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.9e-17 Score=148.33 Aligned_cols=151 Identities=20% Similarity=0.256 Sum_probs=109.1
Q ss_pred ccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCC-CCccccCCCCCc
Q 012027 21 IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRC-PPSSIFLMKNLK 99 (472)
Q Consensus 21 i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~ 99 (472)
.+.+++|+.|++++|. +..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .|..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 4667778888888765 56777 5777788888888877 344443 57778888888888887774 567777888888
Q ss_pred EEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCC-CCCCCCCCCCCCCCCCCEEEcCCCC
Q 012027 100 TLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCG-LGEGAIPSDIGNLHSLKTLYLSKNN 178 (472)
Q Consensus 100 ~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~-l~~~~lp~~l~~l~~L~~L~Ls~n~ 178 (472)
.|++++|..... .+..+..+++|++|++++|. +.+ +| .+..+++|+.|++++|.
T Consensus 116 ~L~Ls~n~i~~~----------------------~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 116 LLDISHSAHDDS----------------------ILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp EEECCSSBCBGG----------------------GHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTBC
T ss_pred EEEecCCccCcH----------------------hHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCCC
Confidence 888877752210 12225667788888888887 543 55 57888888888888888
Q ss_pred CccCCcccCCCCCcceeeccCcc
Q 012027 179 FVTLPASINCLFNLEKLKLEDCK 201 (472)
Q Consensus 179 ~~~lp~~i~~l~~L~~L~l~~c~ 201 (472)
++.++ .+..+++|+.|++++|+
T Consensus 171 i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 171 VHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCCCT-TGGGCSSCCEEEECBC-
T ss_pred CcChH-HhccCCCCCEEEeeCcc
Confidence 88877 77888888888888875
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=2.4e-17 Score=161.27 Aligned_cols=190 Identities=16% Similarity=0.047 Sum_probs=146.3
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+++|++|+|++|.+..+++ ++.+++|++|++++|. +..+|. +++|++|++++|......+. .+++|++|++
T Consensus 57 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l 127 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYL 127 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEEC
T ss_pred CCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEEC
Confidence 5789999999999998776 9999999999999986 666653 47888898888764433322 3677888888
Q ss_pred eCccCCCCC-ccccCCCCCcEEEecCCCCCCCCCCC---CCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027 81 SGTAIRCPP-SSIFLMKNLKTLSFRGCNGPPSSASC---YLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE 156 (472)
Q Consensus 81 ~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~ 156 (472)
++|.+..++ ..+..+++|+.|++++|......+.. .+.....+....+.+... +....+++|+.|++++|.+..
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE
T ss_pred CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc
Confidence 888888764 46777888888888888643321111 123333344445544432 445568999999999999964
Q ss_pred CCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcccc
Q 012027 157 GAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRL 203 (472)
Q Consensus 157 ~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L 203 (472)
+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus 206 --l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 206 --MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp --ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred --chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 777899999999999999999999999999999999999998765
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.4e-17 Score=170.82 Aligned_cols=208 Identities=19% Similarity=0.194 Sum_probs=142.4
Q ss_pred CCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 2 ECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
++|++|+|++|.|..++ ..++.+++|++|+|++|. +..+++ +..+++|++|+|++|. +..+|. .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEEC
Confidence 47899999999998775 568999999999999987 444444 8889999999999974 444443 378888888
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCC-CCCCcCEEeccCCCCCCC
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLS-GLGSLTKLDLSDCGLGEG 157 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~-~l~~L~~L~L~~~~l~~~ 157 (472)
++|.+..++.. .+++|+.|++++|......+ +..+.....+....+.+.+..+..+. .+++|+.|+|++|.+..
T Consensus 107 ~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~- 183 (487)
T 3oja_A 107 ANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD- 183 (487)
T ss_dssp CSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-
T ss_pred cCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-
Confidence 88888877653 46788888888887433211 12233333344455555543333443 57778888888887753
Q ss_pred CCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCC
Q 012027 158 AIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCA 222 (472)
Q Consensus 158 ~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~ 222 (472)
+|. +..+++|+.|+|++|.++.+|..+..+++|+.|++++|. +..+|.. .++|+.|++.+++
T Consensus 184 -~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 184 -VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred -ccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 333 345778888888888888777777788888888888865 3345432 2456666666543
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=6.9e-16 Score=148.91 Aligned_cols=180 Identities=24% Similarity=0.264 Sum_probs=148.7
Q ss_pred cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCc
Q 012027 20 SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLK 99 (472)
Q Consensus 20 si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 99 (472)
.++++++|+.++++++. ++.+|..+. ++|++|++++|......+..+..+++|++|++++|.+..++.. +.+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred cccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 37789999999999855 889998764 7999999999887666678899999999999999999988765 8899999
Q ss_pred EEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCC
Q 012027 100 TLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN 178 (472)
Q Consensus 100 ~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~ 178 (472)
.|++++|... .+|. +..+++|+.|++++|.+.. ..|..+..+++|+.|+|++|.
T Consensus 81 ~L~Ls~N~l~------------------------~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 81 TLDLSHNQLQ------------------------SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp EEECCSSCCS------------------------SCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC------------------------cCchhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCEEECCCCC
Confidence 9999998632 1333 6788999999999999973 334679999999999999999
Q ss_pred CccCCcc-cCCCCCcceeeccCccccccCCC----CCCCccEEEEccCCCccccccc
Q 012027 179 FVTLPAS-INCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGCASLVTLLGA 230 (472)
Q Consensus 179 ~~~lp~~-i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c~sL~~~~~~ 230 (472)
++.+|.. +..+++|+.|++++|+ ++.+|. -.++|+.|++.++ .++.++..
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~ 190 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKG 190 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChh
Confidence 9988865 5789999999999986 556664 1368999999886 45555543
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=6.2e-17 Score=160.59 Aligned_cols=193 Identities=17% Similarity=0.153 Sum_probs=157.8
Q ss_pred ccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 4 LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 4 L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
....+++++.++++|..+. ++|++|++++|. +..+|. .+.++++|++|++++|......|..++++++|++|++++
T Consensus 33 ~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TSEEECCSTTCSSCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEeeCCCCCccccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 3457788889999998665 599999999987 666765 789999999999999866555577899999999999999
Q ss_pred ccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCC-CCCCCCCCcCEEeccCCCCCCCCCC
Q 012027 83 TAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALML-PSLSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 83 ~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
|.++.+|.. +.++++|++|++++|..... .. ..+..+++|+.|++++|+......+
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l----------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTL----------------------GETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSS----------------------CSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCccc----------------------CchhhhccCCCCcEEECCCCccccccCH
Confidence 999999877 88999999999999863220 11 2377899999999999953334446
Q ss_pred CCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC----CCCCccEEEEccCC
Q 012027 161 SDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGCA 222 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c~ 222 (472)
..++.+++|++|++++|.+..+ |..+..+++|+.|++++|. +..+|. ..++|+.|++.++.
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc
Confidence 7899999999999999999865 8899999999999999987 344543 24688999988763
No 78
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1e-16 Score=169.90 Aligned_cols=169 Identities=26% Similarity=0.379 Sum_probs=140.5
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
|++|+.|+++++.|..++. ++.|++|+.|+|++|. +..+|. +..+++|+.|+|++|. +..+| .+..+++|++|+|
T Consensus 42 L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence 4678899999999988874 8899999999999986 666666 8889999999999975 44455 6888999999999
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
++|.+..++ .+..+++|+.|+|++|.... ++.+..+++|+.|+|++|.+.. ++
T Consensus 117 s~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~------------------------l~~l~~l~~L~~L~Ls~N~l~~--~~ 169 (605)
T 1m9s_A 117 EHNGISDIN-GLVHLPQLESLYLGNNKITD------------------------ITVLSRLTKLDTLSLEDNQISD--IV 169 (605)
T ss_dssp TTSCCCCCG-GGGGCTTCSEEECCSSCCCC------------------------CGGGGSCTTCSEEECCSSCCCC--CG
T ss_pred cCCCCCCCc-cccCCCccCEEECCCCccCC------------------------chhhcccCCCCEEECcCCcCCC--ch
Confidence 999998875 58889999999999886321 2447788999999999999863 43
Q ss_pred CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcccc
Q 012027 161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRL 203 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L 203 (472)
. +..+++|+.|+|++|.+..+| .+..+++|+.|+|++|+..
T Consensus 170 ~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 170 P-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp G-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred h-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 3 899999999999999999886 6899999999999998754
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=167.69 Aligned_cols=104 Identities=24% Similarity=0.352 Sum_probs=49.7
Q ss_pred CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhh-hhCCCCCCCEE
Q 012027 2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLE-TVGQVESLEEL 78 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L 78 (472)
++|++|+|++|.+..+++ .++++++|++|+|++|. +..+| ..+.++++|++|++++|. +..++. .++++++|++|
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKEL 129 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEE
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccc-cccCCCccccccccccEE
Confidence 344444444444444432 24444555555554443 22222 344445555555555442 222222 35555555555
Q ss_pred eeeCccCCC--CCccccCCCCCcEEEecCCC
Q 012027 79 DISGTAIRC--PPSSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 79 ~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~ 107 (472)
++++|.+.. +|..++++++|+.|++++|.
T Consensus 130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred ecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 555555553 45555555555555555554
No 80
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=4.3e-17 Score=157.52 Aligned_cols=178 Identities=20% Similarity=0.256 Sum_probs=144.7
Q ss_pred eeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCC
Q 012027 9 LDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCP 88 (472)
Q Consensus 9 L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l 88 (472)
+....+..+.. +..+++|+.|++++|. +..+|. +..+++|++|++++|.. ..++. +..+++|++|++++|.+..+
T Consensus 31 l~~~~~~~~~~-~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 31 LKKKSVTDAVT-QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp TTCSCTTSEEC-HHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCCG
T ss_pred hcCCCcccccc-hhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCcCCCC
Confidence 44445554433 6789999999999986 777775 88899999999999764 45555 89999999999999999987
Q ss_pred CccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCC
Q 012027 89 PSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHS 168 (472)
Q Consensus 89 p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~ 168 (472)
|. +..+++|+.|++++|.... ++.+..+++|+.|++++|.+.. + ..++.+++
T Consensus 106 ~~-l~~l~~L~~L~L~~n~i~~------------------------~~~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~ 157 (291)
T 1h6t_A 106 SS-LKDLKKLKSLSLEHNGISD------------------------INGLVHLPQLESLYLGNNKITD--I-TVLSRLTK 157 (291)
T ss_dssp GG-GTTCTTCCEEECTTSCCCC------------------------CGGGGGCTTCCEEECCSSCCCC--C-GGGGGCTT
T ss_pred hh-hccCCCCCEEECCCCcCCC------------------------ChhhcCCCCCCEEEccCCcCCc--c-hhhccCCC
Confidence 75 8999999999999986322 2446778999999999999974 4 56899999
Q ss_pred CCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCC--CCccEEEEccC
Q 012027 169 LKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLP--PNVEKVRVNGC 221 (472)
Q Consensus 169 L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp--~~L~~L~~~~c 221 (472)
|+.|+|++|.++.++. +..+++|+.|++++|. +..++.+. ++|+.|++.++
T Consensus 158 L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 158 LDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEE
T ss_pred CCEEEccCCccccchh-hcCCCccCEEECCCCc-CCCChhhccCCCCCEEECcCC
Confidence 9999999999998886 9999999999999984 44555432 46777777765
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=9.5e-17 Score=156.41 Aligned_cols=196 Identities=22% Similarity=0.197 Sum_probs=147.6
Q ss_pred CCccEEEeeCCCCe-eccccc--cCCcCCcEEEeecCcCCCccC----cccCCCCCCCEEEccCCCCchhhhhhhCCCCC
Q 012027 2 ECLRELLLDKTDIK-EMPLSI--ELLSGLVQLTLKGCKNLVRLP----SNINSLKSLKTLNLLGCFKFENLLETVGQVES 74 (472)
Q Consensus 2 ~~L~~L~L~~~~l~-~lp~si--~~L~~L~~L~L~~c~~l~~lp----~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~ 74 (472)
++|++|+|++|.+. .+|..+ +.+++|++|+|++|......| ..+..+++|++|++++|......|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 46899999999888 456666 889999999999987544433 33457889999999998776666678888999
Q ss_pred CCEEeeeCccCCC---C--CccccCCCCCcEEEecCCCCCCCCC-----CCCCCcchhhhcccCCCCcCCCCCCCCC---
Q 012027 75 LEELDISGTAIRC---P--PSSIFLMKNLKTLSFRGCNGPPSSA-----SCYLPFPINLMRRSSDLGALMLPSLSGL--- 141 (472)
Q Consensus 75 L~~L~L~~~~i~~---l--p~~i~~l~~L~~L~L~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~l~~l~~l--- 141 (472)
|++|++++|.+.. + +..++.+++|++|++++|....... ...+.....+....+.+....++.+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 9999999998753 3 2334688899999999887421111 1122344445566666665444445444
Q ss_pred CCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccc
Q 012027 142 GSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKR 202 (472)
Q Consensus 142 ~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~ 202 (472)
++|++|++++|.+. .+|..+. ++|+.|+|++|+++.+|. +..+++|+.|++++|+.
T Consensus 251 ~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 251 SALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred CcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence 79999999999996 4888775 899999999999999886 78899999999999864
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=1.3e-15 Score=145.37 Aligned_cols=177 Identities=24% Similarity=0.267 Sum_probs=147.5
Q ss_pred CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcc-cCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027 2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSN-INSLKSLKTLNLLGCFKFENLLETVGQVESLEELD 79 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (472)
++|++|+|+++.|+.+++ .++.+++|++|+|++|. +..+|.. +.++++|++|++++|......+..+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 468999999999998876 68999999999999987 6677765 47899999999999875544445678999999999
Q ss_pred eeCccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCC
Q 012027 80 ISGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA 158 (472)
Q Consensus 80 L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~ 158 (472)
+++|.+..+|. .+..+++|+.|++++|..... ....+..+++|+.|++++|.+.. .
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------~~~~~~~l~~L~~L~L~~n~l~~-~ 172 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL----------------------PKGVFDKLTSLKELRLYNNQLKR-V 172 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----------------------CTTTTTTCTTCCEEECCSSCCSC-C
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc----------------------CHhHccCCcccceeEecCCcCcE-e
Confidence 99999998765 468999999999999863221 11226788999999999999963 3
Q ss_pred CCCCCCCCCCCCEEEcCCCCCccCCcc-cCCCCCcceeeccCccc
Q 012027 159 IPSDIGNLHSLKTLYLSKNNFVTLPAS-INCLFNLEKLKLEDCKR 202 (472)
Q Consensus 159 lp~~l~~l~~L~~L~Ls~n~~~~lp~~-i~~l~~L~~L~l~~c~~ 202 (472)
.+..+..+++|+.|+|++|.++.+|.. +..+++|+.|++++|+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 344589999999999999999988864 78899999999999863
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=5.5e-17 Score=168.15 Aligned_cols=190 Identities=16% Similarity=0.047 Sum_probs=147.0
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
|++|++|+|++|.+..+++ ++.+++|++|+|++|. +..+|. .++|++|++++|......+. .+++|++|++
T Consensus 57 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L 127 (487)
T 3oja_A 57 FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYL 127 (487)
T ss_dssp CTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEEC
T ss_pred CCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEEC
Confidence 5789999999999997776 9999999999999986 666664 37888888888765443332 3577888888
Q ss_pred eCccCCCC-CccccCCCCCcEEEecCCCCCCCCCCC---CCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027 81 SGTAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSASC---YLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE 156 (472)
Q Consensus 81 ~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~ 156 (472)
++|.+..+ |..++.+++|+.|++++|......+.. .+.....+....+.+... +....+++|+.|+|++|.+..
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp CSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE
T ss_pred CCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC
Confidence 88888865 556778888888888887644322211 223333455555555443 455679999999999999964
Q ss_pred CCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcccc
Q 012027 157 GAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRL 203 (472)
Q Consensus 157 ~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L 203 (472)
+|..++.+++|+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus 206 --~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 206 --MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp --ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred --CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 777799999999999999999999999999999999999998754
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=2.6e-18 Score=169.07 Aligned_cols=198 Identities=17% Similarity=0.188 Sum_probs=115.6
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCc-cCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVR-LPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~-lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
++++.|++.++.+...++.+..+++|++|++++|..... +|..+..+++|++|++++|......+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 456666666666665555555666666666666652222 5555666666666666666555556666666666666666
Q ss_pred eCc-cCC--CCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCC-CcCEEeccCC--C
Q 012027 81 SGT-AIR--CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLG-SLTKLDLSDC--G 153 (472)
Q Consensus 81 ~~~-~i~--~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~-~L~~L~L~~~--~ 153 (472)
++| .++ .++..+.++++|+.|++++|..... ..++. +..++ +|++|++++| .
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~---------------------~~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE---------------------KHVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH---------------------HHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh---------------------HHHHHHHHhcccCCCEEEeCCCccc
Confidence 666 455 2555566666666666666621110 00111 34455 6777777777 3
Q ss_pred CCCCCCCCCCCCCCCCCEEEcCCCC-Cc-cCCcccCCCCCcceeeccCccccc-----cCCCCCCCccEEEEccC
Q 012027 154 LGEGAIPSDIGNLHSLKTLYLSKNN-FV-TLPASINCLFNLEKLKLEDCKRLQ-----SLPQLPPNVEKVRVNGC 221 (472)
Q Consensus 154 l~~~~lp~~l~~l~~L~~L~Ls~n~-~~-~lp~~i~~l~~L~~L~l~~c~~L~-----~lp~lp~~L~~L~~~~c 221 (472)
+.++.+|..+..+++|+.|+|++|. ++ ..+..+..+++|+.|++++|..+. .+.. .++|+.|++.+|
T Consensus 209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~ 282 (336)
T 2ast_B 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI 282 (336)
T ss_dssp SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS
T ss_pred CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCCEEeccCc
Confidence 4433455556667777777777776 43 455566677777777777775321 1112 245666666665
No 85
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=4.1e-17 Score=155.27 Aligned_cols=165 Identities=21% Similarity=0.210 Sum_probs=130.0
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
++..+++.++.++.++ .+..+++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++++
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCC
Confidence 3556677788888777 58888999999999875 77787 58888999999998875 455665 88889999999999
Q ss_pred ccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCC
Q 012027 83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD 162 (472)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~ 162 (472)
|.+..+|.... ++|+.|++++|.... ++.+..+++|+.|++++|++.+ ++ .
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~------------------------~~~l~~l~~L~~L~Ls~N~i~~--~~-~ 145 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRD------------------------TDSLIHLKNLEILSIRNNKLKS--IV-M 145 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSB------------------------SGGGTTCTTCCEEECTTSCCCB--CG-G
T ss_pred CccCCcCcccc--CcccEEEccCCccCC------------------------ChhhcCcccccEEECCCCcCCC--Ch-H
Confidence 99888876444 889999988876321 2346778889999999888864 54 5
Q ss_pred CCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccc
Q 012027 163 IGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKR 202 (472)
Q Consensus 163 l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~ 202 (472)
++.+++|+.|+|++|.++.+ ..+..+++|+.|++++|+.
T Consensus 146 l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred HccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 78888899999999988877 5788888888888888763
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=8.6e-16 Score=144.91 Aligned_cols=157 Identities=21% Similarity=0.201 Sum_probs=131.5
Q ss_pred CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
++|+.|+|++|.+..+++ .++.+++|++|+|++|......|..+..+++|++|++++|......+..++.+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 468999999999998765 5899999999999998744445556889999999999998766555567899999999999
Q ss_pred eCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCC-CCCCCCCcCEEeccCCCCCCCC
Q 012027 81 SGTAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLP-SLSGLGSLTKLDLSDCGLGEGA 158 (472)
Q Consensus 81 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~~~ 158 (472)
++|.+..+|.. +..+++|+.|++++|.... ..+ .+..+++|+.|+|++|.+. +.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~-~~ 170 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-----------------------IPAGAFDKLTNLQTLSLSTNQLQ-SV 170 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCc-----------------------cCHHHcCcCcCCCEEECCCCcCC-cc
Confidence 99999998876 5789999999999986322 122 3788999999999999997 34
Q ss_pred CCCCCCCCCCCCEEEcCCCCCccC
Q 012027 159 IPSDIGNLHSLKTLYLSKNNFVTL 182 (472)
Q Consensus 159 lp~~l~~l~~L~~L~Ls~n~~~~l 182 (472)
.+..+..+++|+.|+|++|.+..-
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 455789999999999999998754
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=7.3e-16 Score=161.81 Aligned_cols=176 Identities=23% Similarity=0.248 Sum_probs=118.5
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
+|+.|+|++++|+.+|..+ +++|++|+|++|. +..+| ..+++|++|++++|. +..+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCC
Confidence 7899999999999999876 4899999999986 67888 458999999999985 455888 655 999999999
Q ss_pred ccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCC
Q 012027 83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD 162 (472)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~ 162 (472)
|.++.+|. .+++|+.|++++|.... .+. .+.....+....+.+.. +|.+. ++|+.|+|++|++. .+|.
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~L~~--lp~l~--~~L~~L~Ls~N~L~--~lp~- 197 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTM-LPE-LPTSLEVLSVRNNQLTF--LPELP--ESLEALDVSTNLLE--SLPA- 197 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSC--CCCCC--TTCCEEECCSSCCS--SCCC-
T ss_pred CcCCCCCC---cCccccEEeCCCCccCc-CCC-cCCCcCEEECCCCCCCC--cchhh--CCCCEEECcCCCCC--chhh-
Confidence 99999988 78999999999987432 111 12222223333343333 22222 55555565555554 2454
Q ss_pred CCCCCCC-------CEEEcCCCCCccCCcccCCCCCcceeeccCccc
Q 012027 163 IGNLHSL-------KTLYLSKNNFVTLPASINCLFNLEKLKLEDCKR 202 (472)
Q Consensus 163 l~~l~~L-------~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~ 202 (472)
+.. +| +.|+|++|.++.+|..+..+++|+.|+|++|+.
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 332 44 555666555555555555555556665555543
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=3.6e-18 Score=168.05 Aligned_cols=179 Identities=20% Similarity=0.216 Sum_probs=145.6
Q ss_pred CCCccEEEeeCCCCee--ccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCch--hhhhhhCCCCCCC
Q 012027 1 MECLRELLLDKTDIKE--MPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE--NLLETVGQVESLE 76 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~--lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~ 76 (472)
+++|++|+|++|.+.. ++..+..+++|++|+|++|......|..+..+++|++|++++|..+. .++..+..+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 4789999999999873 78889999999999999997555778888999999999999996555 4788899999999
Q ss_pred EEeeeCc-cCCC--CCccccCCC-CCcEEEecCCC-CCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEecc
Q 012027 77 ELDISGT-AIRC--PPSSIFLMK-NLKTLSFRGCN-GPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLS 150 (472)
Q Consensus 77 ~L~L~~~-~i~~--lp~~i~~l~-~L~~L~L~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~ 150 (472)
+|++++| .++. ++..+..++ +|+.|++++|. .... ..++. +..+++|+.|+++
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~---------------------~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK---------------------SDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH---------------------HHHHHHHHHCTTCSEEECT
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH---------------------HHHHHHHhhCCCCCEEeCC
Confidence 9999999 8884 677888999 99999999985 1110 01122 4567899999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEcCCCC-Cc-cCCcccCCCCCcceeeccCc
Q 012027 151 DCGLGEGAIPSDIGNLHSLKTLYLSKNN-FV-TLPASINCLFNLEKLKLEDC 200 (472)
Q Consensus 151 ~~~l~~~~lp~~l~~l~~L~~L~Ls~n~-~~-~lp~~i~~l~~L~~L~l~~c 200 (472)
+|....+..+..+..+++|+.|+|++|. +. .....+..+++|+.|++++|
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9983334567788999999999999996 22 11125788999999999999
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=9.9e-17 Score=169.99 Aligned_cols=182 Identities=20% Similarity=0.233 Sum_probs=149.4
Q ss_pred EEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccC
Q 012027 6 ELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAI 85 (472)
Q Consensus 6 ~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i 85 (472)
.+.+..+.+..+.. +..|++|+.|++++|. +..+|. +..|++|+.|+|++|.. ..++. +..+++|+.|+|++|.+
T Consensus 25 ~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT-QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHTTCSCTTSEEC-HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTSCC-CCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHhccCCCcccccc-hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCCCC-CCChh-hccCCCCCEEECcCCCC
Confidence 34455556665544 6789999999999976 777874 88999999999999864 44555 88999999999999999
Q ss_pred CCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCC
Q 012027 86 RCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGN 165 (472)
Q Consensus 86 ~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~ 165 (472)
..+| .+..+++|+.|+|++|.... ++.+..+++|+.|+|++|.+.. + ..++.
T Consensus 100 ~~l~-~l~~l~~L~~L~Ls~N~l~~------------------------l~~l~~l~~L~~L~Ls~N~l~~--l-~~l~~ 151 (605)
T 1m9s_A 100 KDLS-SLKDLKKLKSLSLEHNGISD------------------------INGLVHLPQLESLYLGNNKITD--I-TVLSR 151 (605)
T ss_dssp CCCT-TSTTCTTCCEEECTTSCCCC------------------------CGGGGGCTTCSEEECCSSCCCC--C-GGGGS
T ss_pred CCCh-hhccCCCCCEEEecCCCCCC------------------------CccccCCCccCEEECCCCccCC--c-hhhcc
Confidence 9887 68999999999999987322 3447788999999999999974 4 67899
Q ss_pred CCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC--CCCccEEEEccCC
Q 012027 166 LHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL--PPNVEKVRVNGCA 222 (472)
Q Consensus 166 l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~~c~ 222 (472)
+++|+.|+|++|.+..++. +..+++|+.|+|++|. +..+|.+ .++|+.|++.+|.
T Consensus 152 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 152 LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred cCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence 9999999999999998876 9999999999999985 4445543 2588999988763
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=2.3e-15 Score=149.14 Aligned_cols=198 Identities=17% Similarity=0.140 Sum_probs=155.1
Q ss_pred cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhh-hhCCCCCCCE-Eeee
Q 012027 5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLE-TVGQVESLEE-LDIS 81 (472)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~-L~L~ 81 (472)
+.++.+++++++||..+ .++|++|+|++|+ ++.+|. .+.+|++|++|+|++|..++.+|. .+.++++|++ +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56778889999999876 4789999999976 888986 578999999999999988777764 5688888876 5666
Q ss_pred CccCCCC-CccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027 82 GTAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 82 ~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
+|.+..+ |..+..+++|++|++++|..... ....+.....+..|++.+++-. ..+|
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~~~~l~~l~l~~~~~i-~~l~ 145 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHL----------------------PDVHKIHSLQKVLLDIQDNINI-HTIE 145 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSC----------------------CCCTTCCBSSCEEEEEESCTTC-CEEC
T ss_pred CCcccccCchhhhhccccccccccccccccC----------------------Cchhhcccchhhhhhhcccccc-cccc
Confidence 7899987 45678999999999999873221 0111344556788888775432 2344
Q ss_pred C-CCCCC-CCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC----CCCccEEEEccCCCcccccc
Q 012027 161 S-DIGNL-HSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL----PPNVEKVRVNGCASLVTLLG 229 (472)
Q Consensus 161 ~-~l~~l-~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l----p~~L~~L~~~~c~sL~~~~~ 229 (472)
. .+..+ ..++.|+|++|+++.+|..+....+|+.|++.++..++.+|.- .++|+.|+++++ .|+.++.
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~ 219 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS 219 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS
T ss_pred ccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh
Confidence 3 45555 4689999999999999999888999999999999999999852 368899999987 5777765
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=3.3e-16 Score=142.23 Aligned_cols=150 Identities=19% Similarity=0.254 Sum_probs=94.9
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
++|++|+++++.|..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 45677777777777666 4667777777777776 344444 46667777777777766555566666777777777777
Q ss_pred CccCCC-CCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027 82 GTAIRC-PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 82 ~~~i~~-lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
+|.+.. .|..+..+++|+.|++++|.... .++.+..+++|+.|++++|.+.+ ++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-----------------------~~~~l~~l~~L~~L~l~~n~i~~--~~ 175 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-----------------------DIMPLKTLPELKSLNIQFDGVHD--YR 175 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-----------------------CCGGGGGCSSCCEEECTTBCCCC--CT
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCcc-----------------------ccHhhcCCCCCCEEECCCCCCcC--hH
Confidence 777663 55566677777777777665222 12335566667777777776653 44
Q ss_pred CCCCCCCCCCEEEcCCCCCc
Q 012027 161 SDIGNLHSLKTLYLSKNNFV 180 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~ 180 (472)
.+..+++|+.|++++|++.
T Consensus 176 -~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -TGGGCSSCCEEEECBC---
T ss_pred -HhccCCCCCEEEeeCcccC
Confidence 5666777777777777654
No 92
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=4.4e-15 Score=157.62 Aligned_cols=195 Identities=24% Similarity=0.276 Sum_probs=112.7
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (472)
++|++|+|++|.|+.+|. .+++|++|+|++|. +..+|. .+++|++|++++|. +..+|.. +++|++|+++
T Consensus 81 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls 149 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVS 149 (622)
T ss_dssp TTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECC
T ss_pred CCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECc
Confidence 344444444444444443 34444444444433 333443 23445555555542 3334442 3677777777
Q ss_pred CccCCCCCccccCC-----------------CCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCc
Q 012027 82 GTAIRCPPSSIFLM-----------------KNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSL 144 (472)
Q Consensus 82 ~~~i~~lp~~i~~l-----------------~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L 144 (472)
+|.+..+|..+.++ ++|+.|++++|.... .+. .......+....+.+. .+|. .+++|
T Consensus 150 ~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~-~~~~L~~L~L~~N~l~--~l~~--~~~~L 223 (622)
T 3g06_A 150 DNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT-LPSELYKLWAYNNRLT--SLPA--LPSGL 223 (622)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCS--SCCC--CCTTC
T ss_pred CCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC-ccchhhEEECcCCccc--ccCC--CCCCC
Confidence 77777665433222 556666666665322 111 1112222333333332 2222 24789
Q ss_pred CEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccC
Q 012027 145 TKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGC 221 (472)
Q Consensus 145 ~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c 221 (472)
+.|++++|.+.. +| ..+++|+.|+|++|.++.+|. .+++|+.|++++|. +..+|.- .++|+.|++.++
T Consensus 224 ~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 224 KELIVSGNRLTS--LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSC
T ss_pred CEEEccCCccCc--CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCC
Confidence 999999999864 77 566899999999999999997 67899999999985 4466532 245666766665
Q ss_pred C
Q 012027 222 A 222 (472)
Q Consensus 222 ~ 222 (472)
+
T Consensus 295 ~ 295 (622)
T 3g06_A 295 P 295 (622)
T ss_dssp C
T ss_pred C
Confidence 3
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=3.4e-15 Score=136.54 Aligned_cols=172 Identities=19% Similarity=0.153 Sum_probs=123.6
Q ss_pred cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027 5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT 83 (472)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 83 (472)
+.++.+++.++++|..+ .++|++|++++|. +..+|. .+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45677778888888644 5688999999876 555554 4678888999999887544333345678888999999988
Q ss_pred cCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCC
Q 012027 84 AIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPS 161 (472)
Q Consensus 84 ~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~ 161 (472)
.+..+|.. +..+++|+.|++++|.... ..+. +..+++|+.|++++|.+.. ..+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------~~~~~~~~l~~L~~L~l~~N~l~~-~~~~ 142 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQS-----------------------LPDGVFDKLTQLKDLRLYQNQLKS-VPDG 142 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCSC-CCTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcc-----------------------cCHhHhccCCcCCEEECCCCccce-eCHH
Confidence 88877765 5788888888888875321 1122 5677888888888888763 3334
Q ss_pred CCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC
Q 012027 162 DIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL 209 (472)
Q Consensus 162 ~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l 209 (472)
.+..+++|+.|+|++|.+. ..+++|+.|++..+..-..+|..
T Consensus 143 ~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred HhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeecc
Confidence 4778888888888888654 34567888888887766666643
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=4.7e-15 Score=137.09 Aligned_cols=100 Identities=17% Similarity=0.221 Sum_probs=56.8
Q ss_pred cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027 5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT 83 (472)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 83 (472)
+.++++++.++++|..+. ++|+.|+|++|. +..+|. .+..+++|++|+|++|......|..+..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 345566666666665443 566666666654 444443 4566666666666665544444556666666666666666
Q ss_pred cCCCCCcc-ccCCCCCcEEEecCCC
Q 012027 84 AIRCPPSS-IFLMKNLKTLSFRGCN 107 (472)
Q Consensus 84 ~i~~lp~~-i~~l~~L~~L~L~~~~ 107 (472)
.+..+|.. +..+++|+.|+|++|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCC
Confidence 66655543 2445555555555443
No 95
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=5.8e-18 Score=178.31 Aligned_cols=173 Identities=18% Similarity=0.177 Sum_probs=139.8
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCc-------------CCCccCcccCCCCCCCEEE-ccCCCCchhhhh
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCK-------------NLVRLPSNINSLKSLKTLN-LLGCFKFENLLE 67 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~-------------~l~~lp~~i~~L~~L~~L~-Ls~c~~l~~lp~ 67 (472)
++|+.|+|++|.|+.+|.+|++|++|+.|++++|. .....|..++.+++|+.|+ ++.+ .+..++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDDLRS 427 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccchhhh
Confidence 57888999999999999999999999999987654 3445667778888888888 4432 2222221
Q ss_pred ------hhCC--CCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-C
Q 012027 68 ------TVGQ--VESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-L 138 (472)
Q Consensus 68 ------~l~~--l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l 138 (472)
.+.. ...|+.|++++|.++.+|. ++.+++|+.|+|++|... .+|. +
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~------------------------~lp~~~ 482 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR------------------------ALPPAL 482 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC------------------------CCCGGG
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc------------------------ccchhh
Confidence 1111 1359999999999999997 999999999999998632 2333 7
Q ss_pred CCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC--CcccCCCCCcceeeccCcccc
Q 012027 139 SGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL--PASINCLFNLEKLKLEDCKRL 203 (472)
Q Consensus 139 ~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l--p~~i~~l~~L~~L~l~~c~~L 203 (472)
..+++|+.|+|++|.+.. +| .++.+++|+.|+|++|.++.+ |..++.+++|+.|+|++|+.-
T Consensus 483 ~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 483 AALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp GGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred hcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 889999999999999974 78 899999999999999999988 899999999999999998743
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=2.9e-15 Score=137.03 Aligned_cols=158 Identities=23% Similarity=0.209 Sum_probs=130.3
Q ss_pred CCccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027 2 ECLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD 79 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (472)
++|++|+|+++.++.++.. ++.+++|++|++++|. +..+|. .+..+++|++|++++|......+..++.+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 5799999999999988765 6899999999999986 666665 468899999999999865544445578999999999
Q ss_pred eeCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCC
Q 012027 80 ISGTAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEG 157 (472)
Q Consensus 80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~ 157 (472)
+++|.+..+|.. +..+++|+.|++++|.... ..+. +..+++|+.|++++|.+.
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-----------------------~~~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-----------------------VPDGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-----------------------CCTTTTTTCTTCCEEECCSCCBC--
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccce-----------------------eCHHHhccCCCccEEEecCCCee--
Confidence 999999988765 6889999999999986322 1222 678899999999999764
Q ss_pred CCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCC
Q 012027 158 AIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFN 191 (472)
Q Consensus 158 ~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~ 191 (472)
+.+++|+.|+++.|+++ .+|.+++.++.
T Consensus 162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 ------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 45678999999999998 89988877655
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=9e-15 Score=136.03 Aligned_cols=147 Identities=17% Similarity=0.171 Sum_probs=109.5
Q ss_pred CcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCcc-ccCCCCCcEEEecC
Q 012027 27 LVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSS-IFLMKNLKTLSFRG 105 (472)
Q Consensus 27 L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~ 105 (472)
.+.++.+++ .+..+|..+. ++|++|+|++|......|..+..+++|++|+|++|.+..+|.. +..+++|+.|+|++
T Consensus 21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345666653 3677776553 7788888888766555577777888888888888888877654 46788888888887
Q ss_pred CCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCc
Q 012027 106 CNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA 184 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~ 184 (472)
|.... ..+. +..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++.+|.
T Consensus 98 N~l~~-----------------------l~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 98 NQLTV-----------------------LPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp SCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred CcCCc-----------------------cChhHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCccCH
Confidence 75321 1122 567888888888888886 488888888999999999999888774
Q ss_pred -ccCCCCCcceeeccCcc
Q 012027 185 -SINCLFNLEKLKLEDCK 201 (472)
Q Consensus 185 -~i~~l~~L~~L~l~~c~ 201 (472)
.+..+++|+.|++++|+
T Consensus 153 ~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTTCTTCCEEECTTSC
T ss_pred HHHhCCCCCCEEEeeCCC
Confidence 47788888888888875
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.61 E-value=2.3e-15 Score=160.30 Aligned_cols=103 Identities=23% Similarity=0.248 Sum_probs=47.2
Q ss_pred CccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEe
Q 012027 3 CLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELD 79 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~ 79 (472)
++++|+|++|+|+.+|+ +|+++++|++|+|++|. +..+|+ ++.+|++|++|+|++|. +..+| ..++++++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEE
Confidence 34455555555554442 34455555555555443 333332 34445555555555543 22232 2344455555555
Q ss_pred eeCccCCCCCc-cccCCCCCcEEEecCCC
Q 012027 80 ISGTAIRCPPS-SIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 80 L~~~~i~~lp~-~i~~l~~L~~L~L~~~~ 107 (472)
+++|.++.+|. .++++++|++|++++|.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCc
Confidence 55555444433 24445555555554443
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=1.2e-14 Score=134.21 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=52.4
Q ss_pred cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCcc-C-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRL-P-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~l-p-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
+.++++++.++++|..+. ..+++|+|++|. +..+ | ..+..+++|++|+|++|......+..+..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 355666666666665442 344566666654 4444 2 2245566666666666543332333555566666666666
Q ss_pred ccCCCCCcc-ccCCCCCcEEEecCCC
Q 012027 83 TAIRCPPSS-IFLMKNLKTLSFRGCN 107 (472)
Q Consensus 83 ~~i~~lp~~-i~~l~~L~~L~L~~~~ 107 (472)
|.+..++.. +..+++|++|++++|.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCc
Confidence 665554432 4445555555555443
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=5.3e-15 Score=147.24 Aligned_cols=169 Identities=23% Similarity=0.210 Sum_probs=85.1
Q ss_pred cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcc-cC-CCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027 5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSN-IN-SLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG 82 (472)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~-i~-~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (472)
+.++++++.++.+|..+. ..++.|+|++|. +..++.. +. ++++|++|+|++|......+..+..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 345566666666665432 345666666654 4444432 33 566666666666543333334566666666666666
Q ss_pred ccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCC
Q 012027 83 TAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPS 161 (472)
Q Consensus 83 ~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~ 161 (472)
|.+..++. .+..+++|+.|+|++|.... .....+..+++|+.|+|++|.+.. +|.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~----------------------~~~~~~~~l~~L~~L~L~~N~l~~--l~~ 153 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVV----------------------VDRNAFEDMAQLQKLYLSQNQISR--FPV 153 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCE----------------------ECTTTTTTCTTCCEEECCSSCCCS--CCG
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccE----------------------ECHHHhCCcccCCEEECCCCcCCe--eCH
Confidence 66665543 34555666666665554211 011124455555555555555542 443
Q ss_pred CC----CCCCCCCEEEcCCCCCccCCc-ccCCCCC--cceeeccCc
Q 012027 162 DI----GNLHSLKTLYLSKNNFVTLPA-SINCLFN--LEKLKLEDC 200 (472)
Q Consensus 162 ~l----~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~--L~~L~l~~c 200 (472)
.+ ..+++|+.|+|++|.++.+|. .+..++. |+.|+|++|
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 32 345555555555555555542 2333333 244444443
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=4.1e-15 Score=141.35 Aligned_cols=151 Identities=21% Similarity=0.302 Sum_probs=129.5
Q ss_pred CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
|++|++|++++|.|+.++ .++.+++|++|+|++|. +..+|. +.++++|++|++++|. +..+|.... ++|++|++
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEEC
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCc-cCCcCcccc--CcccEEEc
Confidence 468999999999999998 69999999999999986 777877 8999999999999975 555666443 89999999
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP 160 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp 160 (472)
++|.+..++ .+..+++|+.|++++|.... ++.+..+++|+.|++++|.+.+ +
T Consensus 114 ~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~------------------------~~~l~~l~~L~~L~L~~N~i~~--~- 165 (263)
T 1xeu_A 114 DNNELRDTD-SLIHLKNLEILSIRNNKLKS------------------------IVMLGFLSKLEVLDLHGNEITN--T- 165 (263)
T ss_dssp CSSCCSBSG-GGTTCTTCCEEECTTSCCCB------------------------CGGGGGCTTCCEEECTTSCCCB--C-
T ss_pred cCCccCCCh-hhcCcccccEEECCCCcCCC------------------------ChHHccCCCCCEEECCCCcCcc--h-
Confidence 999999986 58999999999999987322 2346778999999999999974 4
Q ss_pred CCCCCCCCCCEEEcCCCCCccCCcc
Q 012027 161 SDIGNLHSLKTLYLSKNNFVTLPAS 185 (472)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~~~~lp~~ 185 (472)
..+..+++|+.|++++|.+...|..
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred HHhccCCCCCEEeCCCCcccCCccc
Confidence 6789999999999999999877643
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=9.4e-17 Score=161.27 Aligned_cols=198 Identities=15% Similarity=0.195 Sum_probs=113.1
Q ss_pred CCccEEEeeCCCCee-----ccccccCCcCCcEEEeecCc--CC-CccCccc-------CCCCCCCEEEccCCCCch---
Q 012027 2 ECLRELLLDKTDIKE-----MPLSIELLSGLVQLTLKGCK--NL-VRLPSNI-------NSLKSLKTLNLLGCFKFE--- 63 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~-----lp~si~~L~~L~~L~L~~c~--~l-~~lp~~i-------~~L~~L~~L~Ls~c~~l~--- 63 (472)
++|++|+|++|.|.. ++..+..+++|++|+|++|. .+ ..+|.++ ..+++|++|+|++|....
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 456666666666552 23335566666666666652 11 1223332 456666666666665444
Q ss_pred -hhhhhhCCCCCCCEEeeeCccCCC-----CCccccCC---------CCCcEEEecCCCCCCCCCCCCCCcchhhhcccC
Q 012027 64 -NLLETVGQVESLEELDISGTAIRC-----PPSSIFLM---------KNLKTLSFRGCNGPPSSASCYLPFPINLMRRSS 128 (472)
Q Consensus 64 -~lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l---------~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~ 128 (472)
.+|..+..+++|++|+|++|.+.. ++..+..+ ++|+.|++++|....
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~------------------ 173 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN------------------ 173 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG------------------
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc------------------
Confidence 356666666666666666666542 22223333 666666666665211
Q ss_pred CCCcCCCC----CCCCCCCcCEEeccCCCCCCC----CCCCCCCCCCCCCEEEcCCCCC-----ccCCcccCCCCCccee
Q 012027 129 DLGALMLP----SLSGLGSLTKLDLSDCGLGEG----AIPSDIGNLHSLKTLYLSKNNF-----VTLPASINCLFNLEKL 195 (472)
Q Consensus 129 ~~~~~~l~----~l~~l~~L~~L~L~~~~l~~~----~lp~~l~~l~~L~~L~Ls~n~~-----~~lp~~i~~l~~L~~L 195 (472)
..++ .+..+++|+.|++++|.+... .+|..+..+++|+.|+|++|.+ ..+|..+..+++|+.|
T Consensus 174 ----~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 174 ----GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp ----GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred ----HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 0111 134556777888877776421 2344667777788888888777 4567777777778888
Q ss_pred eccCcccccc----CCC-C----CCCccEEEEccC
Q 012027 196 KLEDCKRLQS----LPQ-L----PPNVEKVRVNGC 221 (472)
Q Consensus 196 ~l~~c~~L~~----lp~-l----p~~L~~L~~~~c 221 (472)
+|++|..-.. ++. + .++|+.|++.+|
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 8877763221 121 1 345666666655
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=2.6e-16 Score=158.10 Aligned_cols=203 Identities=15% Similarity=0.118 Sum_probs=152.4
Q ss_pred CCCccEEEeeCCCCe----eccccc-------cCCcCCcEEEeecCcCCC----ccCcccCCCCCCCEEEccCCCCchh-
Q 012027 1 MECLRELLLDKTDIK----EMPLSI-------ELLSGLVQLTLKGCKNLV----RLPSNINSLKSLKTLNLLGCFKFEN- 64 (472)
Q Consensus 1 l~~L~~L~L~~~~l~----~lp~si-------~~L~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~Ls~c~~l~~- 64 (472)
+++|++|+|+++.+. .+|..+ ..+++|++|+|++|.... .+|..+..+++|++|+|++|.....
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 478999999997554 334444 789999999999987444 3788888999999999999976433
Q ss_pred ---hhhhhCCC---------CCCCEEeeeCccCC--CCC---ccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhccc
Q 012027 65 ---LLETVGQV---------ESLEELDISGTAIR--CPP---SSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRS 127 (472)
Q Consensus 65 ---lp~~l~~l---------~~L~~L~L~~~~i~--~lp---~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~ 127 (472)
++..+..+ ++|++|++++|.+. .+| ..+..+++|+.|++++|..... .+
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~----------g~---- 204 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE----------GI---- 204 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH----------HH----
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh----------HH----
Confidence 44445445 89999999999987 445 4677899999999999863210 00
Q ss_pred CCCCcCCCC-CCCCCCCcCEEeccCCCCCC---CCCCCCCCCCCCCCEEEcCCCCCcc-----CCcccC--CCCCcceee
Q 012027 128 SDLGALMLP-SLSGLGSLTKLDLSDCGLGE---GAIPSDIGNLHSLKTLYLSKNNFVT-----LPASIN--CLFNLEKLK 196 (472)
Q Consensus 128 ~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~---~~lp~~l~~l~~L~~L~Ls~n~~~~-----lp~~i~--~l~~L~~L~ 196 (472)
....+ .+..+++|+.|+|++|.+.. ..+|..+..+++|+.|+|++|.+.. +|..+. .+++|+.|+
T Consensus 205 ----~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~ 280 (386)
T 2ca6_A 205 ----EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 280 (386)
T ss_dssp ----HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEE
T ss_pred ----HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEE
Confidence 00122 46778899999999998841 2467788899999999999999974 567774 499999999
Q ss_pred ccCccccc----cCCCC----CCCccEEEEccC
Q 012027 197 LEDCKRLQ----SLPQL----PPNVEKVRVNGC 221 (472)
Q Consensus 197 l~~c~~L~----~lp~l----p~~L~~L~~~~c 221 (472)
|++|..-. .+|.. .++|+.|++.+|
T Consensus 281 L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp CCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 99997544 25532 367788877775
No 104
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.57 E-value=2.3e-14 Score=152.55 Aligned_cols=176 Identities=26% Similarity=0.292 Sum_probs=108.6
Q ss_pred cCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEeeeCccCCCC-CccccCCCCCc
Q 012027 22 ELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDISGTAIRCP-PSSIFLMKNLK 99 (472)
Q Consensus 22 ~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~ 99 (472)
..+.+|++|++..+. ...++..+..+++|+.+++.++......+ ..+..+.+|+.++++.|.+..+ |..+..+++|+
T Consensus 394 ~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~ 472 (635)
T 4g8a_A 394 FGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 472 (635)
T ss_dssp HSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred hhhhhhhhhhccccc-cccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhh
Confidence 334444444444433 22233334444555555554443332222 2334455555555555555422 33344455555
Q ss_pred EEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCC
Q 012027 100 TLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN 178 (472)
Q Consensus 100 ~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~ 178 (472)
.|++++|.. .....|. +..+++|+.|+|++|++. +..|..|+.+++|++|+|++|+
T Consensus 473 ~L~Ls~N~~----------------------~~~~~~~~~~~l~~L~~L~Ls~N~L~-~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 473 VLKMAGNSF----------------------QENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp EEECTTCEE----------------------GGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSC
T ss_pred hhhhhhccc----------------------ccccCchhhhhccccCEEECCCCccC-CcChHHHcCCCCCCEEECCCCc
Confidence 555555431 1112333 788999999999999996 4567889999999999999999
Q ss_pred CccCCc-ccCCCCCcceeeccCccccccCCC----CCCCccEEEEccC
Q 012027 179 FVTLPA-SINCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGC 221 (472)
Q Consensus 179 ~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c 221 (472)
++.+|. .+..+++|+.|+|++|+.....|+ +|++|+.|+++++
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 998754 688999999999999875544443 4567888888764
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=3.9e-14 Score=130.90 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=120.9
Q ss_pred cEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEeeeCccCCCCCc-cccCCCCCcEEEecC
Q 012027 28 VQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDISGTAIRCPPS-SIFLMKNLKTLSFRG 105 (472)
Q Consensus 28 ~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~ 105 (472)
+.++++++. ++.+|..+. ..+++|+|++|......| ..++.+++|++|++++|.++.++. .+.++++|+.|++++
T Consensus 14 ~~l~~s~n~-l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCC-cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 588998865 788998664 467899999976544323 447899999999999999998765 789999999999999
Q ss_pred CCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-C
Q 012027 106 CNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-P 183 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p 183 (472)
|.... ..+. +..+++|++|+|++|.+. +..|..+..+++|+.|+|++|.++.+ |
T Consensus 91 N~l~~-----------------------~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 91 NRLEN-----------------------VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp SCCCC-----------------------CCGGGGTTCSSCCEEECTTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred CccCc-----------------------cCHhHhcCCcCCCEEECCCCcCC-eECHhHcCCCccCCEEECCCCcCCEECH
Confidence 87432 1222 778899999999999997 45578899999999999999999977 7
Q ss_pred cccCCCCCcceeeccCcc
Q 012027 184 ASINCLFNLEKLKLEDCK 201 (472)
Q Consensus 184 ~~i~~l~~L~~L~l~~c~ 201 (472)
..+..+++|+.|++++|+
T Consensus 147 ~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTTTTCTTCCEEECCSCC
T ss_pred HHhcCCCCCCEEEecCcC
Confidence 788999999999999875
No 106
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=1.3e-14 Score=127.91 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=60.1
Q ss_pred cCCcCCcEEEeecCcCC-CccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCC-CCccccCCCCCc
Q 012027 22 ELLSGLVQLTLKGCKNL-VRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRC-PPSSIFLMKNLK 99 (472)
Q Consensus 22 ~~L~~L~~L~L~~c~~l-~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~ 99 (472)
...++|+.|++++|... ..+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.. +|..+.++++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34567788888877632 2677767777888888888776 4444 667777888888888888776 666666677888
Q ss_pred EEEecCCC
Q 012027 100 TLSFRGCN 107 (472)
Q Consensus 100 ~L~L~~~~ 107 (472)
.|++++|.
T Consensus 99 ~L~Ls~N~ 106 (168)
T 2ell_A 99 HLNLSGNK 106 (168)
T ss_dssp EEECBSSS
T ss_pred EEeccCCc
Confidence 88777765
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=5.6e-15 Score=160.15 Aligned_cols=190 Identities=16% Similarity=0.117 Sum_probs=108.2
Q ss_pred CccEEEeeCCCCeeccccccCCcCCcEEEeec----CcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027 3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKG----CKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL 78 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~----c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (472)
.++.|+|.++.+..++..+.....|..+.+.. +..+...|..+..+.+|++|+|++|.. ..+|..+..+++|++|
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRL 252 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCC
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEE
Confidence 46778888888887777665555566655543 223445677788999999999999764 5788888899999999
Q ss_pred eeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCC
Q 012027 79 DISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA 158 (472)
Q Consensus 79 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~ 158 (472)
+|++|.+..+|..+++|++|+.|+|++|.... ....+..+++|++|+|++|.+. .
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-----------------------lp~~~~~l~~L~~L~L~~N~l~--~ 307 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-----------------------LPAELGSCFQLKYFYFFDNMVT--T 307 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS-----------------------CCSSGGGGTTCSEEECCSSCCC--C
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCc-----------------------cChhhcCCCCCCEEECCCCCCC--c
Confidence 99999999999999999999999999987321 1223788899999999999985 5
Q ss_pred CCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCC-CcceeeccCccccccCCCCCCCccEEEEccC
Q 012027 159 IPSDIGNLHSLKTLYLSKNNFV-TLPASINCLF-NLEKLKLEDCKRLQSLPQLPPNVEKVRVNGC 221 (472)
Q Consensus 159 lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~-~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c 221 (472)
+|..|+.+++|+.|+|++|.++ .+|..+..+. .+..|++++|.... .+|..+..|++.++
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~---~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI---PLPHERRFIEINTD 369 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCC---------
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC---cCccccceeEeecc
Confidence 8999999999999999999998 4454443332 12235666665433 23456666666554
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=2.2e-13 Score=142.91 Aligned_cols=158 Identities=23% Similarity=0.275 Sum_probs=112.9
Q ss_pred CCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecC
Q 012027 26 GLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRG 105 (472)
Q Consensus 26 ~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 105 (472)
+|+.|+|++|. +..+|..+ +++|++|+|++|. +..+| +.+++|++|++++|.++.+|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 89999999976 77799877 4899999999975 55788 568999999999999999998 665 999999999
Q ss_pred CCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcc
Q 012027 106 CNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPAS 185 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~ 185 (472)
|.... +|. .+++|+.|++++|.+.. +|. .+++|+.|+|++|.++.+|.
T Consensus 130 N~l~~------------------------lp~--~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~lp~- 177 (571)
T 3cvr_A 130 NQLTM------------------------LPE--LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLTFLPE- 177 (571)
T ss_dssp SCCSC------------------------CCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC-
T ss_pred CcCCC------------------------CCC--cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCCCcch-
Confidence 87322 222 45667777777777653 555 45677777777777777766
Q ss_pred cCCCCCcceeeccCccccccCCCCCCCc-------cEEEEccCCCcccccc
Q 012027 186 INCLFNLEKLKLEDCKRLQSLPQLPPNV-------EKVRVNGCASLVTLLG 229 (472)
Q Consensus 186 i~~l~~L~~L~l~~c~~L~~lp~lp~~L-------~~L~~~~c~sL~~~~~ 229 (472)
+. ++|+.|+|++|. +..+|.++.+| +.|+++++ .++.++.
T Consensus 178 l~--~~L~~L~Ls~N~-L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~ 224 (571)
T 3cvr_A 178 LP--ESLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCREN-RITHIPE 224 (571)
T ss_dssp CC--TTCCEEECCSSC-CSSCCCCC--------CCEEEECCSS-CCCCCCG
T ss_pred hh--CCCCEEECcCCC-CCchhhHHHhhhcccccceEEecCCC-cceecCH
Confidence 54 677777777763 44666655566 66666665 3444443
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=3.1e-13 Score=124.77 Aligned_cols=105 Identities=24% Similarity=0.300 Sum_probs=84.2
Q ss_pred CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhh-hhCCCCCCCEEe
Q 012027 2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLE-TVGQVESLEELD 79 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~ 79 (472)
++|++|+|++|.|+.+++ .+..+++|++|+|++|......|..+.++++|++|+|++|.. ..+|. .+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEEE
Confidence 479999999999999876 689999999999999884444578899999999999999764 45654 468899999999
Q ss_pred eeCccCCCCC-ccccCCCCCcEEEecCCC
Q 012027 80 ISGTAIRCPP-SSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 80 L~~~~i~~lp-~~i~~l~~L~~L~L~~~~ 107 (472)
|++|.+..++ ..+..+++|+.|+|++|.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 9999999774 445555555555555543
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=4.1e-13 Score=124.72 Aligned_cols=149 Identities=23% Similarity=0.208 Sum_probs=124.5
Q ss_pred cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEeeeCc
Q 012027 5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDISGT 83 (472)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~ 83 (472)
+.++.+++.+..+|..+. ++|++|+|++|......|..+..+++|++|+|++|.. ..+| ..+..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCC
Confidence 568888889999997664 8999999999885555577889999999999999865 5555 55789999999999999
Q ss_pred cCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC-C
Q 012027 84 AIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP-S 161 (472)
Q Consensus 84 ~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp-~ 161 (472)
.++.+|.. +..+++|+.|++++|.... ....+..+++|+.|+|++|.+.. +| .
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-----------------------lp~~~~~l~~L~~L~L~~N~l~~--~~~~ 153 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTE-----------------------LPRGIERLTHLTHLALDQNQLKS--IPHG 153 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCS-----------------------CCTTGGGCTTCSEEECCSSCCCC--CCTT
T ss_pred cCCccChhHhCcchhhCeEeccCCcccc-----------------------cCcccccCCCCCEEECCCCcCCc--cCHH
Confidence 99988765 5789999999999987321 12236788999999999999988 55 4
Q ss_pred CCCCCCCCCEEEcCCCCCcc
Q 012027 162 DIGNLHSLKTLYLSKNNFVT 181 (472)
Q Consensus 162 ~l~~l~~L~~L~Ls~n~~~~ 181 (472)
.+..+++|+.|+|++|.+..
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCT
T ss_pred HHhCCCCCCEEEeeCCCccC
Confidence 58899999999999999874
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=1.1e-14 Score=144.99 Aligned_cols=200 Identities=17% Similarity=0.152 Sum_probs=119.3
Q ss_pred CccEEEeeCCCCeecc-----ccccCCc-CCcEEEeecCcCCCccCcccCCC-----CCCCEEEccCCCCchhhhh----
Q 012027 3 CLRELLLDKTDIKEMP-----LSIELLS-GLVQLTLKGCKNLVRLPSNINSL-----KSLKTLNLLGCFKFENLLE---- 67 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp-----~si~~L~-~L~~L~L~~c~~l~~lp~~i~~L-----~~L~~L~Ls~c~~l~~lp~---- 67 (472)
+|++|+|++|.|..++ ..+..++ +|++|+|++|......+..+..+ ++|++|+|++|......+.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 4778888888777655 4466777 78888888876333334444443 7788888888764433333
Q ss_pred hhCCC-CCCCEEeeeCccCCCCCcc-----ccC-CCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CC
Q 012027 68 TVGQV-ESLEELDISGTAIRCPPSS-----IFL-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LS 139 (472)
Q Consensus 68 ~l~~l-~~L~~L~L~~~~i~~lp~~-----i~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~ 139 (472)
.+..+ ++|++|++++|.+...+.. +.. .++|++|++++|....... ..++. +.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-------------------~~l~~~l~ 163 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS-------------------DELIQILA 163 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-------------------HHHHHHHH
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-------------------HHHHHHHh
Confidence 23344 7788888888877755431 233 2578888887775221000 00001 22
Q ss_pred CCC-CcCEEeccCCCCCCCCCCC----CCCCC-CCCCEEEcCCCCCcc-----CCcccCCC-CCcceeeccCcccccc--
Q 012027 140 GLG-SLTKLDLSDCGLGEGAIPS----DIGNL-HSLKTLYLSKNNFVT-----LPASINCL-FNLEKLKLEDCKRLQS-- 205 (472)
Q Consensus 140 ~l~-~L~~L~L~~~~l~~~~lp~----~l~~l-~~L~~L~Ls~n~~~~-----lp~~i~~l-~~L~~L~l~~c~~L~~-- 205 (472)
.++ +|++|+|++|.+.+ ..+. .+..+ ++|+.|+|++|.+.. ++..+..+ ++|+.|++++|..-..
T Consensus 164 ~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp TSCTTCCEEECTTSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred cCCccccEeeecCCCCch-hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 333 78888888887752 2222 23334 578888888888775 66666553 4788888888753221
Q ss_pred -----CCCCCCCccEEEEccCC
Q 012027 206 -----LPQLPPNVEKVRVNGCA 222 (472)
Q Consensus 206 -----lp~lp~~L~~L~~~~c~ 222 (472)
+-.-.+.|+.|++++|.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHhcCCCccEEEeccCC
Confidence 11223567777777764
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=1.2e-13 Score=121.75 Aligned_cols=129 Identities=22% Similarity=0.193 Sum_probs=108.3
Q ss_pred CCCCCCEEEccCCCCc-hhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhc
Q 012027 47 SLKSLKTLNLLGCFKF-ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMR 125 (472)
Q Consensus 47 ~L~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~ 125 (472)
..++|++|++++|... +.+|..+..+++|++|++++|.+..+ ..+..+++|+.|++++|....
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~--------------- 85 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFG--------------- 85 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCS---------------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCch---------------
Confidence 4578999999998754 47888888999999999999999988 778899999999999987432
Q ss_pred ccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCC--CCCCCCCCCCEEEcCCCCCccCCc----ccCCCCCcceeecc
Q 012027 126 RSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIP--SDIGNLHSLKTLYLSKNNFVTLPA----SINCLFNLEKLKLE 198 (472)
Q Consensus 126 ~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp--~~l~~l~~L~~L~Ls~n~~~~lp~----~i~~l~~L~~L~l~ 198 (472)
.+|. +..+++|+.|++++|.+.. +| ..+..+++|+.|++++|.++.+|. .+..+++|+.|+++
T Consensus 86 --------~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 86 --------GLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp --------CCCHHHHHCTTCCEEECBSSSCCS--SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred --------HHHHHHhhCCCCCEEeccCCccCc--chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 1333 4458899999999999864 54 678899999999999999998887 78899999999999
Q ss_pred Ccc
Q 012027 199 DCK 201 (472)
Q Consensus 199 ~c~ 201 (472)
+|.
T Consensus 156 ~n~ 158 (168)
T 2ell_A 156 DRE 158 (168)
T ss_dssp ETT
T ss_pred CCC
Confidence 986
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=2.8e-15 Score=157.85 Aligned_cols=154 Identities=17% Similarity=0.171 Sum_probs=121.4
Q ss_pred eccccccCCcCCcEEE-eecCcCCCccCc------ccCC--CCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCC
Q 012027 16 EMPLSIELLSGLVQLT-LKGCKNLVRLPS------NINS--LKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIR 86 (472)
Q Consensus 16 ~lp~si~~L~~L~~L~-L~~c~~l~~lp~------~i~~--L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 86 (472)
.+|..++.+++|+.|+ ++.+. +..++. .+.. ...|++|+|++|. +..+|. ++.+++|++|+|++|.++
T Consensus 400 ~~~~~l~~l~~L~~L~~l~~n~-~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 400 YEKETLQYFSTLKAVDPMRAAY-LDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC
T ss_pred CCHHHHHHHHhcccCcchhhcc-cchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccccc
Confidence 4566788899999998 44432 222221 0111 1259999999974 566887 999999999999999999
Q ss_pred CCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCC-CCCCCC
Q 012027 87 CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAI-PSDIGN 165 (472)
Q Consensus 87 ~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~l-p~~l~~ 165 (472)
.+|..++.+++|+.|+|++|... .+|.+..+++|+.|+|++|.+.. .. |..++.
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~------------------------~lp~l~~l~~L~~L~Ls~N~l~~-~~~p~~l~~ 531 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALE------------------------NVDGVANLPRLQELLLCNNRLQQ-SAAIQPLVS 531 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCC------------------------CCGGGTTCSSCCEEECCSSCCCS-SSTTGGGGG
T ss_pred ccchhhhcCCCCCEEECCCCCCC------------------------CCcccCCCCCCcEEECCCCCCCC-CCCcHHHhc
Confidence 99999999999999999998632 24568889999999999999974 33 899999
Q ss_pred CCCCCEEEcCCCCCccCCcccC----CCCCcceeec
Q 012027 166 LHSLKTLYLSKNNFVTLPASIN----CLFNLEKLKL 197 (472)
Q Consensus 166 l~~L~~L~Ls~n~~~~lp~~i~----~l~~L~~L~l 197 (472)
+++|+.|+|++|.++.+|..+. .+++|+.|++
T Consensus 532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999999998886543 3778888764
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=8.5e-13 Score=131.22 Aligned_cols=153 Identities=22% Similarity=0.204 Sum_probs=122.4
Q ss_pred cEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhC-CCCCCCEEeeeCccCCCCC-ccccCCCCCcEEEecC
Q 012027 28 VQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVG-QVESLEELDISGTAIRCPP-SSIFLMKNLKTLSFRG 105 (472)
Q Consensus 28 ~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~ 105 (472)
+.++++++. +..+|..+. ..+++|+|++|......+..+. .+++|++|+|++|.|..++ ..+.++++|+.|+|++
T Consensus 21 ~~l~c~~~~-l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSC-CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCC-cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 678888854 888998664 5699999999865444445566 8999999999999999876 4689999999999999
Q ss_pred CCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcc
Q 012027 106 CNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPAS 185 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~ 185 (472)
|.... .....+..+++|+.|+|++|.+. ...|..+..+++|+.|+|++|.++.+|..
T Consensus 98 N~l~~----------------------~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 98 NHLHT----------------------LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp SCCCE----------------------ECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred CcCCc----------------------CCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 87322 01123778999999999999996 34577899999999999999999999987
Q ss_pred c----CCCCCcceeeccCccccccCC
Q 012027 186 I----NCLFNLEKLKLEDCKRLQSLP 207 (472)
Q Consensus 186 i----~~l~~L~~L~l~~c~~L~~lp 207 (472)
+ ..+++|+.|+|++|+ ++.+|
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~-l~~l~ 179 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNK-LKKLP 179 (361)
T ss_dssp GTC----CTTCCEEECCSSC-CCCCC
T ss_pred HhcCcccCCcCCEEECCCCC-CCccC
Confidence 6 679999999999985 44444
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=1.3e-14 Score=157.35 Aligned_cols=156 Identities=19% Similarity=0.122 Sum_probs=112.9
Q ss_pred CCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCcc
Q 012027 12 TDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSS 91 (472)
Q Consensus 12 ~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~ 91 (472)
+.+...+..+..++.|+.|+|++|. +..+|..+.++++|++|+|++|.. ..+|..++++++|++|+|++|.|..+|..
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~ 288 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSLPAE 288 (727)
T ss_dssp -----------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSCCSSCCSS
T ss_pred cceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCcCCccChh
Confidence 3344456678999999999999987 668998888999999999999864 48999999999999999999999999999
Q ss_pred ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCC-C
Q 012027 92 IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHS-L 169 (472)
Q Consensus 92 i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~-L 169 (472)
+++|++|++|+|++|... .+|. +..+++|+.|+|++|.+. +.+|..+..+.. +
T Consensus 289 ~~~l~~L~~L~L~~N~l~------------------------~lp~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~~~~~~ 343 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVT------------------------TLPWEFGNLCNLQFLGVEGNPLE-KQFLKILTEKSVTG 343 (727)
T ss_dssp GGGGTTCSEEECCSSCCC------------------------CCCSSTTSCTTCCCEECTTSCCC-SHHHHHHHHHHHHH
T ss_pred hcCCCCCCEEECCCCCCC------------------------ccChhhhcCCCccEEeCCCCccC-CCChHHHhhcchhh
Confidence 999999999999998632 2333 888999999999999996 556666544322 2
Q ss_pred CEEEcCCCCCc-cCCcccCCCCCcceeeccCc
Q 012027 170 KTLYLSKNNFV-TLPASINCLFNLEKLKLEDC 200 (472)
Q Consensus 170 ~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c 200 (472)
..|+|++|.++ .+|. .|+.|+++.+
T Consensus 344 ~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 344 LIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp HHHHHHHCCCCCCCCC------C---------
T ss_pred hHHhhccCcccCcCcc------ccceeEeecc
Confidence 34678888887 4553 4556666665
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=9.2e-13 Score=118.87 Aligned_cols=126 Identities=20% Similarity=0.273 Sum_probs=66.0
Q ss_pred cEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhh--hhCCCCCCCEEeeeCccCCCC-CccccCCCCCcEEEec
Q 012027 28 VQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLE--TVGQVESLEELDISGTAIRCP-PSSIFLMKNLKTLSFR 104 (472)
Q Consensus 28 ~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~--~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 104 (472)
+.++++++. ++.+|..+.. +|++|++++|. +..++. .++.+++|++|+|++|.++.+ |..+.++++|+.|+++
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCC-cCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 344444432 4445543322 55555555543 223332 255555556666655555544 4445555555555555
Q ss_pred CCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc
Q 012027 105 GCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180 (472)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~ 180 (472)
+|.... .....+.++++|+.|+|++|++. +..|..+..+++|+.|+|++|.+.
T Consensus 87 ~N~l~~----------------------~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKE----------------------ISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCE----------------------ECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCc----------------------cCHHHhcCCCCCCEEECCCCcCC-eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 544211 01111445566666666666664 345666777777777777777765
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=1.2e-13 Score=119.05 Aligned_cols=104 Identities=23% Similarity=0.308 Sum_probs=94.2
Q ss_pred CCccEEEeeCCCCe--eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027 2 ECLRELLLDKTDIK--EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD 79 (472)
Q Consensus 2 ~~L~~L~L~~~~l~--~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (472)
++|++|++++|.+. .+|..++.+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 57999999999998 899988999999999999986 6666 6689999999999999877666899888899999999
Q ss_pred eeCccCCCCC--ccccCCCCCcEEEecCCC
Q 012027 80 ISGTAIRCPP--SSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 80 L~~~~i~~lp--~~i~~l~~L~~L~L~~~~ 107 (472)
+++|.+..+| ..+..+++|+.|++++|.
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 9999999875 889999999999999986
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=1.1e-13 Score=119.49 Aligned_cols=59 Identities=25% Similarity=0.218 Sum_probs=40.1
Q ss_pred CCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCc----ccCCCCCcceeeccC
Q 012027 141 LGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA----SINCLFNLEKLKLED 199 (472)
Q Consensus 141 l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~----~i~~l~~L~~L~l~~ 199 (472)
+++|+.|++++|.+.+-..+..++.+++|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 45556666666655421123667778888888888888887775 577788888887753
No 119
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.41 E-value=2.4e-15 Score=154.23 Aligned_cols=218 Identities=16% Similarity=0.134 Sum_probs=125.3
Q ss_pred CCccEEEeeCCCCeecc--ccccCCcCCcEEEeecCcCCC-----ccCcccCCCCCCCEEEccCCCCchhhhhh-hCCCC
Q 012027 2 ECLRELLLDKTDIKEMP--LSIELLSGLVQLTLKGCKNLV-----RLPSNINSLKSLKTLNLLGCFKFENLLET-VGQVE 73 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp--~si~~L~~L~~L~L~~c~~l~-----~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~ 73 (472)
++|++|+|+++.++..+ ..+..+++|++|+|++|. +. .++..+..+++|++|++++|......+.. ...+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 46777888777776443 225667778888888776 33 45566666777778888776544332322 22333
Q ss_pred ----CCCEEeeeCccCC-----CCCccccCCCCCcEEEecCCCCCCCCC-------CCCCCcchhhhcccCCCCcCC---
Q 012027 74 ----SLEELDISGTAIR-----CPPSSIFLMKNLKTLSFRGCNGPPSSA-------SCYLPFPINLMRRSSDLGALM--- 134 (472)
Q Consensus 74 ----~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~--- 134 (472)
+|++|++++|.+. .+|..+..+++|+.|++++|....... .........+....+.+....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 5777777777776 346667777777777777765211000 000011112222222222211
Q ss_pred CCC-CCCCCCcCEEeccCCCCCCCCCCCCCC-----CCCCCCEEEcCCCCCcc-----CCcccCCCCCcceeeccCcccc
Q 012027 135 LPS-LSGLGSLTKLDLSDCGLGEGAIPSDIG-----NLHSLKTLYLSKNNFVT-----LPASINCLFNLEKLKLEDCKRL 203 (472)
Q Consensus 135 l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~-----~l~~L~~L~Ls~n~~~~-----lp~~i~~l~~L~~L~l~~c~~L 203 (472)
++. +..+++|++|++++|.+.+ ..+..+. ..++|+.|+|++|.++. ++..+..+++|+.|++++|..-
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINE-AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHH-HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHhhCCCCCEEECcCCCcch-HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 111 3446778888888877642 1111121 24578888888887774 5666777788888888887421
Q ss_pred cc----C----CCCCCCccEEEEccC
Q 012027 204 QS----L----PQLPPNVEKVRVNGC 221 (472)
Q Consensus 204 ~~----l----p~lp~~L~~L~~~~c 221 (472)
.. + ..-.++|+.|++.+|
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCC
Confidence 10 1 112357778887777
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=7.8e-12 Score=112.89 Aligned_cols=124 Identities=21% Similarity=0.220 Sum_probs=78.9
Q ss_pred CEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCC
Q 012027 52 KTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLG 131 (472)
Q Consensus 52 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 131 (472)
++++++++ .+..+|..+ .++|++|++++|.++.+|..+.++++|+.|++++|.....
T Consensus 13 ~~l~~~~~-~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-------------------- 69 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-------------------- 69 (193)
T ss_dssp TEEECTTS-CCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC--------------------
T ss_pred CEEEcCCC-CCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe--------------------
Confidence 45555553 344555443 2456666666666666666666666666666666652210
Q ss_pred cCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcc-cCCCCCcceeeccCcc
Q 012027 132 ALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPAS-INCLFNLEKLKLEDCK 201 (472)
Q Consensus 132 ~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~-i~~l~~L~~L~l~~c~ 201 (472)
....+.++++|+.|+|++|.+. +..|..+..+++|+.|+|++|.++.+|.. +..+++|+.|++++|+
T Consensus 70 --~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 70 --SNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred --CHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 1122566777777777777775 33445677888888888888888877763 6777888888887764
No 121
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.36 E-value=6.6e-14 Score=143.48 Aligned_cols=204 Identities=22% Similarity=0.159 Sum_probs=134.2
Q ss_pred CCCccEEEeeCCCCeec-ccccc-----CCcCCcEEEeecCcCCC----ccCcccCCCCCCCEEEccCCCCchh----h-
Q 012027 1 MECLRELLLDKTDIKEM-PLSIE-----LLSGLVQLTLKGCKNLV----RLPSNINSLKSLKTLNLLGCFKFEN----L- 65 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p~si~-----~L~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~Ls~c~~l~~----l- 65 (472)
+++|++|+|++|.+... +..+. .+++|++|++++|.... .++..+..+++|++|++++|..... +
T Consensus 169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 248 (461)
T 1z7x_W 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC 248 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH
Confidence 47899999999998743 22232 36699999999987333 2677778899999999999864332 2
Q ss_pred hhhhCCCCCCCEEeeeCccCCC-----CCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCC
Q 012027 66 LETVGQVESLEELDISGTAIRC-----PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSG 140 (472)
Q Consensus 66 p~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~ 140 (472)
+.....+++|++|++++|.++. ++..+.++++|+.|++++|....... ..+... + ...
T Consensus 249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-------~~l~~~--------l--~~~ 311 (461)
T 1z7x_W 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA-------RLLCET--------L--LEP 311 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH-------HHHHHH--------H--TST
T ss_pred HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH-------HHHHHH--------h--ccC
Confidence 2333468999999999999986 67788889999999999986211000 000000 0 112
Q ss_pred CCCcCEEeccCCCCCCCC---CCCCCCCCCCCCEEEcCCCCCccC-C----cccCC-CCCcceeeccCccccc----cCC
Q 012027 141 LGSLTKLDLSDCGLGEGA---IPSDIGNLHSLKTLYLSKNNFVTL-P----ASINC-LFNLEKLKLEDCKRLQ----SLP 207 (472)
Q Consensus 141 l~~L~~L~L~~~~l~~~~---lp~~l~~l~~L~~L~Ls~n~~~~l-p----~~i~~-l~~L~~L~l~~c~~L~----~lp 207 (472)
.++|+.|++++|.+.... ++..+..+++|++|+|++|.+... + ..+.. .++|+.|++++|..-. .+|
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 346888888888775321 345566677888888888877632 2 22222 5678888888875321 333
Q ss_pred CC---CCCccEEEEccC
Q 012027 208 QL---PPNVEKVRVNGC 221 (472)
Q Consensus 208 ~l---p~~L~~L~~~~c 221 (472)
.. .++|+.|++++|
T Consensus 392 ~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHCCCCCEEECCSS
T ss_pred HHHHhCCCccEEECCCC
Confidence 21 257777877776
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.35 E-value=2.7e-13 Score=134.90 Aligned_cols=196 Identities=17% Similarity=0.169 Sum_probs=138.3
Q ss_pred EEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccC-----cccCCCC-CCCEEEccCCCCchhhhhhhCCC-----C
Q 012027 6 ELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLP-----SNINSLK-SLKTLNLLGCFKFENLLETVGQV-----E 73 (472)
Q Consensus 6 ~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp-----~~i~~L~-~L~~L~Ls~c~~l~~lp~~l~~l-----~ 73 (472)
.+.|+.++++.. |..+...++|++|+|++|. +...+ ..+..++ +|++|+|++|......+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 467888998854 5545566679999999988 55554 5677788 89999999986555445555554 9
Q ss_pred CCCEEeeeCccCCCCCcc-----ccCC-CCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCC-CCCcC
Q 012027 74 SLEELDISGTAIRCPPSS-----IFLM-KNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSG-LGSLT 145 (472)
Q Consensus 74 ~L~~L~L~~~~i~~lp~~-----i~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~-l~~L~ 145 (472)
+|++|++++|.+...+.. +..+ ++|+.|++++|...... .. .+.. +.. .++|+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~------------------~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS-SS------------------EFKQAFSNLPASIT 141 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC-HH------------------HHHHHHTTSCTTCC
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH-HH------------------HHHHHHHhCCCcee
Confidence 999999999999865432 4455 89999999998732210 00 0000 233 35899
Q ss_pred EEeccCCCCCCC---CCCCCCCCCC-CCCEEEcCCCCCccCCc-----ccCCC-CCcceeeccCccccc----cCC----
Q 012027 146 KLDLSDCGLGEG---AIPSDIGNLH-SLKTLYLSKNNFVTLPA-----SINCL-FNLEKLKLEDCKRLQ----SLP---- 207 (472)
Q Consensus 146 ~L~L~~~~l~~~---~lp~~l~~l~-~L~~L~Ls~n~~~~lp~-----~i~~l-~~L~~L~l~~c~~L~----~lp---- 207 (472)
+|++++|.+.+. .++..+..++ +|++|+|++|.++.... .+..+ ++|+.|+|++|..-. .++
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 999999988631 1233345554 99999999999985442 45566 599999999997332 122
Q ss_pred CCCCCccEEEEccC
Q 012027 208 QLPPNVEKVRVNGC 221 (472)
Q Consensus 208 ~lp~~L~~L~~~~c 221 (472)
..+++|+.|++++|
T Consensus 222 ~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 222 SIPNHVVSLNLCLN 235 (362)
T ss_dssp HSCTTCCEEECCSS
T ss_pred cCCCCceEEECcCC
Confidence 24679999999887
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=6.3e-12 Score=113.34 Aligned_cols=126 Identities=19% Similarity=0.205 Sum_probs=102.6
Q ss_pred CCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCcc--ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccC
Q 012027 51 LKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSS--IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSS 128 (472)
Q Consensus 51 L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~ 128 (472)
-++++++++ .+..+|..+.. +|++|++++|.+..++.. +..+++|++|++++|....
T Consensus 10 ~~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------ 68 (192)
T 1w8a_A 10 GTTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG------------------ 68 (192)
T ss_dssp TTEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC------------------
T ss_pred CCEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC------------------
Confidence 378999985 46788887644 899999999999988764 8899999999999987332
Q ss_pred CCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccc
Q 012027 129 DLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKR 202 (472)
Q Consensus 129 ~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~ 202 (472)
.....+.++++|+.|+|++|++. +..+..+..+++|+.|+|++|+++.+ |..+..+++|+.|++++|+.
T Consensus 69 ----~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 69 ----IEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp ----BCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ----cCHhHcCCcccCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 12233788999999999999996 44556689999999999999999855 77889999999999998863
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.6e-12 Score=115.51 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=44.6
Q ss_pred CCCCCcCEEeccCCCCCCCCCCC--CCCCCCCCCEEEcCCCCCccCCcc----cCCCCCcceeeccCcc
Q 012027 139 SGLGSLTKLDLSDCGLGEGAIPS--DIGNLHSLKTLYLSKNNFVTLPAS----INCLFNLEKLKLEDCK 201 (472)
Q Consensus 139 ~~l~~L~~L~L~~~~l~~~~lp~--~l~~l~~L~~L~Ls~n~~~~lp~~----i~~l~~L~~L~l~~c~ 201 (472)
..+++|+.|++++|.+. .+|. .++.+++|+.|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 85 ~~l~~L~~L~L~~N~i~--~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV--ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCCCC--CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCcCC--cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 34455666666666663 2555 677888888888888888888875 7888888888888765
No 125
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.31 E-value=6.4e-13 Score=140.57 Aligned_cols=218 Identities=17% Similarity=0.083 Sum_probs=127.0
Q ss_pred CCCccEEEeeCCCCee-ccccccC-Cc-CCcEEEeecCcCCC--ccCcccCCCCCCCEEEccCCCCchh----hhhhhCC
Q 012027 1 MECLRELLLDKTDIKE-MPLSIEL-LS-GLVQLTLKGCKNLV--RLPSNINSLKSLKTLNLLGCFKFEN----LLETVGQ 71 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~-lp~si~~-L~-~L~~L~L~~c~~l~--~lp~~i~~L~~L~~L~Ls~c~~l~~----lp~~l~~ 71 (472)
+++|++|+|+++.+.. .+..++. ++ +|++|+|++|..+. .++..+.++++|++|+|++|..... ++..+..
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 4688889998887762 3334544 33 48888888876322 2333334677888888888753222 4445556
Q ss_pred CCCCCEEeeeCccCCC-----CCccccCCCCCcEEEecCCCCCCCC-CCCCCCcchhhhcccCC--CC-cCCCCCCCCCC
Q 012027 72 VESLEELDISGTAIRC-----PPSSIFLMKNLKTLSFRGCNGPPSS-ASCYLPFPINLMRRSSD--LG-ALMLPSLSGLG 142 (472)
Q Consensus 72 l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~l~~~~~~--~~-~~~l~~l~~l~ 142 (472)
+++|++|+++++.+.. ++..+.++++|+.|++++|...... .....+....+...... .. ......+..++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 7777788887777652 3444556777777777776421100 00000011111110000 00 11122366777
Q ss_pred CcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--cCCcccCCCCCcceeeccCccccccCCC---CCCCccEEE
Q 012027 143 SLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV--TLPASINCLFNLEKLKLEDCKRLQSLPQ---LPPNVEKVR 217 (472)
Q Consensus 143 ~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~--~lp~~i~~l~~L~~L~l~~c~~L~~lp~---lp~~L~~L~ 217 (472)
+|+.|+++++.. ..+|..+..+++|++|+|++|.+. .++..+..+++|+.|++.++..-..++. -.++|+.|+
T Consensus 271 ~L~~L~l~~~~~--~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 271 KLCRLGLSYMGP--NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp TCCEEEETTCCT--TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccCccccch--hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 888888877543 457777788888888888888865 3334467888888888875432222222 135688888
Q ss_pred Ecc
Q 012027 218 VNG 220 (472)
Q Consensus 218 ~~~ 220 (472)
+.+
T Consensus 349 L~~ 351 (592)
T 3ogk_B 349 IER 351 (592)
T ss_dssp EEC
T ss_pred eec
Confidence 874
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=2.6e-12 Score=114.09 Aligned_cols=102 Identities=18% Similarity=0.106 Sum_probs=77.7
Q ss_pred CCccEEEeeCCCCeeccccccCCc-CCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhh-hCCCCCCCEEe
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLS-GLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLET-VGQVESLEELD 79 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~-~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~ 79 (472)
.+|++|++++|.++.+|. +..+. +|++|++++|. +..+ ..+..+++|++|++++|. +..+|.. ++.+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEE
Confidence 578888888888887765 54444 88888888876 5566 457788888888888875 4455544 47788888888
Q ss_pred eeCccCCCCCc--cccCCCCCcEEEecCCC
Q 012027 80 ISGTAIRCPPS--SIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 80 L~~~~i~~lp~--~i~~l~~L~~L~L~~~~ 107 (472)
+++|.+..+|. .+..+++|+.|++++|.
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence 88888888776 77788888888888875
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.2e-11 Score=111.69 Aligned_cols=105 Identities=20% Similarity=0.200 Sum_probs=74.5
Q ss_pred CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
++|++|+|++|.|+.+|..+..+++|++|+|++|. +..++ ..+.++++|++|+|++|......|..+..+++|++|+|
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 35777777777777777777777777777777766 44444 45777777777777776654444556777777777777
Q ss_pred eCccCCCCCcc-ccCCCCCcEEEecCCC
Q 012027 81 SGTAIRCPPSS-IFLMKNLKTLSFRGCN 107 (472)
Q Consensus 81 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 107 (472)
++|.+..+|.. +..+++|+.|++++|.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 77777777653 6667777777777765
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=3.7e-11 Score=106.58 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=45.2
Q ss_pred cEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCcc-ccCCCCCcEEEecCC
Q 012027 28 VQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSS-IFLMKNLKTLSFRGC 106 (472)
Q Consensus 28 ~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~ 106 (472)
+.++++++. +..+|..+ .++|++|++++|......+..++.+++|++|++++|.+..+|.. +..+++|+.|++++|
T Consensus 10 ~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 455555543 55566443 35677777776553332334456777777777777777766543 355566666666555
Q ss_pred C
Q 012027 107 N 107 (472)
Q Consensus 107 ~ 107 (472)
.
T Consensus 87 ~ 87 (177)
T 2o6r_A 87 K 87 (177)
T ss_dssp C
T ss_pred C
Confidence 4
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=6.3e-11 Score=105.07 Aligned_cols=125 Identities=20% Similarity=0.222 Sum_probs=88.2
Q ss_pred CCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccC
Q 012027 50 SLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSS 128 (472)
Q Consensus 50 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~ 128 (472)
+.+.++++++ .+..+|..+ .++|++|++++|.+..+|.. +..+++|++|++++|....
T Consensus 8 ~~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------ 66 (177)
T 2o6r_A 8 SGTEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS------------------ 66 (177)
T ss_dssp ETTEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC------------------
T ss_pred CCCEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE------------------
Confidence 3567777774 455666554 36788888888888877654 4778888888888775321
Q ss_pred CCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCccc-CCCCCcceeeccCcc
Q 012027 129 DLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCK 201 (472)
Q Consensus 129 ~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i-~~l~~L~~L~l~~c~ 201 (472)
..+. +..+++|+.|++++|.+. +..+..+..+++|+.|+|++|.++.+|..+ ..+++|+.|++++|+
T Consensus 67 -----~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 67 -----LPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp -----CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -----eChhHccCCCccCEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 1122 567788888888888876 333344678888888888888888777654 678888888888875
No 130
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.25 E-value=1e-12 Score=138.96 Aligned_cols=217 Identities=17% Similarity=0.086 Sum_probs=140.4
Q ss_pred CCCccEEEeeCCCC----eeccccc------------cCCcCCcEEEeecCcCCCccCcccCCC--CCCCEEEccCCCCc
Q 012027 1 MECLRELLLDKTDI----KEMPLSI------------ELLSGLVQLTLKGCKNLVRLPSNINSL--KSLKTLNLLGCFKF 62 (472)
Q Consensus 1 l~~L~~L~L~~~~l----~~lp~si------------~~L~~L~~L~L~~c~~l~~lp~~i~~L--~~L~~L~Ls~c~~l 62 (472)
+++|++|+|+++.. ..+|..+ ..+++|++|+|++|......+..+..+ .+|++|++++|...
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 57899999988532 1233222 378999999999986333344445443 45999999999743
Q ss_pred h--hhhhhhCCCCCCCEEeeeCccCCCC-----CccccCCCCCcEEEecCCCCCCCCCC------CCCCcchhhhcccCC
Q 012027 63 E--NLLETVGQVESLEELDISGTAIRCP-----PSSIFLMKNLKTLSFRGCNGPPSSAS------CYLPFPINLMRRSSD 129 (472)
Q Consensus 63 ~--~lp~~l~~l~~L~~L~L~~~~i~~l-----p~~i~~l~~L~~L~L~~~~~~~~~~~------~~~~~~~~l~~~~~~ 129 (472)
. .++..+..+++|++|+|++|.+... +..+..+++|+.|+++++........ ...+....+....+.
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 2 3555566899999999999987633 33456789999999998864311000 011111112222221
Q ss_pred CCcCCCCC-CCCCCCcCEEeccCCCCC--CCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcccccc-
Q 012027 130 LGALMLPS-LSGLGSLTKLDLSDCGLG--EGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQS- 205 (472)
Q Consensus 130 ~~~~~l~~-l~~l~~L~~L~L~~~~l~--~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~- 205 (472)
... ++. +..+++|++|+++.+... ....+..+..+++|+.|+++++....+|..+..+++|+.|++++|. +..
T Consensus 232 ~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~ 308 (592)
T 3ogk_B 232 ILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETE 308 (592)
T ss_dssp GGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHH
T ss_pred HHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHH
Confidence 111 222 455667777777653221 1234566788889999999888777888888899999999999998 321
Q ss_pred -C---CCCCCCccEEEEcc
Q 012027 206 -L---PQLPPNVEKVRVNG 220 (472)
Q Consensus 206 -l---p~lp~~L~~L~~~~ 220 (472)
+ -.-.++|+.|++.+
T Consensus 309 ~~~~~~~~~~~L~~L~L~~ 327 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETRN 327 (592)
T ss_dssp HHHHHHTTCTTCCEEEEEG
T ss_pred HHHHHHHhCcCCCEEeccC
Confidence 1 12346889998853
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.23 E-value=3e-13 Score=143.13 Aligned_cols=107 Identities=20% Similarity=0.189 Sum_probs=63.4
Q ss_pred CCCccEEEeeCCC-Ceec---c------------ccccCCcCCcEEEeecCcCCCccCcccC-CCCCCCEEEccCCCCch
Q 012027 1 MECLRELLLDKTD-IKEM---P------------LSIELLSGLVQLTLKGCKNLVRLPSNIN-SLKSLKTLNLLGCFKFE 63 (472)
Q Consensus 1 l~~L~~L~L~~~~-l~~l---p------------~si~~L~~L~~L~L~~c~~l~~lp~~i~-~L~~L~~L~Ls~c~~l~ 63 (472)
+++|++|+|+++. +..+ | .....+++|+.|+|++|......+..+. .+++|++|++++|..+.
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 4667777777753 2211 1 1124567777777777753333333343 46777777777775544
Q ss_pred h--hhhhhCCCCCCCEEeeeCccCCC-----CCccccCCCCCcEEEecCCC
Q 012027 64 N--LLETVGQVESLEELDISGTAIRC-----PPSSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 64 ~--lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~ 107 (472)
. ++..+.++++|++|++++|.+.. ++.....+++|+.|++++|.
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 3 55555567777777777776543 22333356677777777664
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=2.6e-14 Score=129.66 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=33.0
Q ss_pred ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCC
Q 012027 44 NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 44 ~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~ 107 (472)
.+..+++|++|++++|. +..+| .+..+++|++|++++|.+..+|..+..+++|+.|++++|.
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred HHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence 45555555555555543 33344 4555555555555555555555555555555555555543
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=1.1e-13 Score=125.55 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=85.0
Q ss_pred CccEEEeeCC--CCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 3 CLRELLLDKT--DIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 3 ~L~~L~L~~~--~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
.|+.+.+.+. .++++|..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEEC
Confidence 3556666654 677788789999999999999986 67788 78999999999999975 5578888888899999999
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCC
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~ 107 (472)
++|.+..+| .+..+++|+.|++++|.
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEEE
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCCc
Confidence 999999887 57788888888888775
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=1.7e-10 Score=101.77 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=86.6
Q ss_pred ccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCcc-CcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEeee
Q 012027 4 LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRL-PSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDIS 81 (472)
Q Consensus 4 L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~ 81 (472)
.++|+++++.++++|..+ .++|++|+|++|. +..+ |..+.++++|++|+|++|... .+| ..+..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence 478999999999999876 4899999999987 5555 677899999999999998654 555 456899999999999
Q ss_pred CccCCCCCcc-ccCCCCCcEEEecCCC
Q 012027 82 GTAIRCPPSS-IFLMKNLKTLSFRGCN 107 (472)
Q Consensus 82 ~~~i~~lp~~-i~~l~~L~~L~L~~~~ 107 (472)
+|.++.+|.. +..+++|+.|+|++|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 9999998874 8899999999999986
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=1.8e-10 Score=101.98 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=86.6
Q ss_pred cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhh-hCCCCCCCEEeeeCc
Q 012027 5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLET-VGQVESLEELDISGT 83 (472)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~~~ 83 (472)
+.++++++.+.++|..+. ++|++|+|++|......|..+.++++|++|+|++|. +..+|.. +..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 678999999999998775 899999999988444446778999999999999975 5556654 689999999999999
Q ss_pred cCCCCCcc-ccCCCCCcEEEecCCC
Q 012027 84 AIRCPPSS-IFLMKNLKTLSFRGCN 107 (472)
Q Consensus 84 ~i~~lp~~-i~~l~~L~~L~L~~~~ 107 (472)
.+..+|.. +..+++|+.|++++|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 99999876 8899999999999986
No 136
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.12 E-value=3.5e-12 Score=134.89 Aligned_cols=106 Identities=22% Similarity=0.220 Sum_probs=71.8
Q ss_pred CCCccEEEeeCCCCee-cccccc-CCcCCcEEEeecCcCCCc--cCcccCCCCCCCEEEccCCCCch----hhhhhhCCC
Q 012027 1 MECLRELLLDKTDIKE-MPLSIE-LLSGLVQLTLKGCKNLVR--LPSNINSLKSLKTLNLLGCFKFE----NLLETVGQV 72 (472)
Q Consensus 1 l~~L~~L~L~~~~l~~-lp~si~-~L~~L~~L~L~~c~~l~~--lp~~i~~L~~L~~L~Ls~c~~l~----~lp~~l~~l 72 (472)
+++|++|+|+++.+.. .+..+. .+++|+.|+|++|..+.. ++..+.++++|++|++++|.... .++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 4678899999888763 333454 688899999988865554 55544568888888888876222 244444567
Q ss_pred CCCCEEeeeCcc--CC--CCCccccCCCCCcEEEecCC
Q 012027 73 ESLEELDISGTA--IR--CPPSSIFLMKNLKTLSFRGC 106 (472)
Q Consensus 73 ~~L~~L~L~~~~--i~--~lp~~i~~l~~L~~L~L~~~ 106 (472)
++|++|+++++. +. .++..+.++++|+.|++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 788888888876 21 12222345688888888877
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=3.1e-10 Score=111.13 Aligned_cols=172 Identities=17% Similarity=0.123 Sum_probs=103.3
Q ss_pred CCCccEEEeeCCCCe--------------------ecccc-ccC--------CcCCcEEEeecCcCCCccCc-ccCCCCC
Q 012027 1 MECLRELLLDKTDIK--------------------EMPLS-IEL--------LSGLVQLTLKGCKNLVRLPS-NINSLKS 50 (472)
Q Consensus 1 l~~L~~L~L~~~~l~--------------------~lp~s-i~~--------L~~L~~L~L~~c~~l~~lp~-~i~~L~~ 50 (472)
+++|+.|+|++|.|. .+|.. |.+ +++|+.|+|.+ .++.++. ++.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 478999999999887 34432 556 88888888877 4666664 4777888
Q ss_pred CCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccC----CCCC-----------------------ccc-----------
Q 012027 51 LKTLNLLGCFKFENLLETVGQVESLEELDISGTAI----RCPP-----------------------SSI----------- 92 (472)
Q Consensus 51 L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i----~~lp-----------------------~~i----------- 92 (472)
|+.|++.++....--+..+..+.++..+.+..+.. ..+. ..+
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 88888887654333334444444444443332100 0000 000
Q ss_pred -----------------cCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCC
Q 012027 93 -----------------FLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLG 155 (472)
Q Consensus 93 -----------------~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~ 155 (472)
..+++|+.|++.+|.... .....|.++.+|+.|+|..+ +.
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~----------------------I~~~aF~~~~~L~~l~l~~n-i~ 262 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT----------------------IPDFTFAQKKYLLKIKLPHN-LK 262 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE----------------------ECTTTTTTCTTCCEEECCTT-CC
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce----------------------ecHhhhhCCCCCCEEECCcc-cc
Confidence 025667777766654111 01112677777888888775 43
Q ss_pred CCCCC-CCCCCCCCCC-EEEcCCCCCccCC-cccCCCCCcceeeccCc
Q 012027 156 EGAIP-SDIGNLHSLK-TLYLSKNNFVTLP-ASINCLFNLEKLKLEDC 200 (472)
Q Consensus 156 ~~~lp-~~l~~l~~L~-~L~Ls~n~~~~lp-~~i~~l~~L~~L~l~~c 200 (472)
.++ ..|..+++|+ .|++.. +++.++ ..+..|++|+.|++.++
T Consensus 263 --~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 263 --TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp --EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS
T ss_pred --eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC
Confidence 243 3577778887 888877 666665 46677788888877654
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=1.9e-09 Score=94.95 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=26.9
Q ss_pred CCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCC-CccccCCCCCcEEEecCCC
Q 012027 51 LKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCP-PSSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 51 L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~ 107 (472)
.++++++++ .+..+|..+ .++|++|+|++|.|+.+ |..+.++++|++|+|++|.
T Consensus 11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 65 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC
Confidence 445555553 344455444 24555555555555544 3334445555555554443
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=1.9e-09 Score=95.36 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=26.6
Q ss_pred CEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCC-CccccCCCCCcEEEecCCC
Q 012027 52 KTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCP-PSSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 52 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~ 107 (472)
+.++++++ .+..+|..+. ++|++|+|++|.+..+ |..+.++++|+.|+|++|.
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 68 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK 68 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC
Confidence 45555553 3345555442 5555555555555544 3344455555555555443
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.93 E-value=2.4e-09 Score=105.36 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=86.9
Q ss_pred EEEeeCC-CCeeccccccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027 6 ELLLDKT-DIKEMPLSIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT 83 (472)
Q Consensus 6 ~L~L~~~-~l~~lp~si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 83 (472)
.++++++ +|+.+|. |..+++|+.|+|+++..+..+| ..+.+|++|++|+|++|......|..++++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4678887 8999999 9999999999999734477777 57899999999999998765556678899999999999999
Q ss_pred cCCCCCccccCCCCCcEEEecCCC
Q 012027 84 AIRCPPSSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 84 ~i~~lp~~i~~l~~L~~L~L~~~~ 107 (472)
.+..+|..+.....|+.|+|.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 999999877665559999999886
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=2.3e-08 Score=98.26 Aligned_cols=103 Identities=20% Similarity=0.192 Sum_probs=72.4
Q ss_pred CEEEccCCCCchhhhhhhCCCCCCCEEeeeC-ccCCCCC-ccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCC
Q 012027 52 KTLNLLGCFKFENLLETVGQVESLEELDISG-TAIRCPP-SSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSD 129 (472)
Q Consensus 52 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~-~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~ 129 (472)
..++++++..+..+|. +..+++|++|+|++ |.+..+| ..+.+|++|+.|+|++|....
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~------------------- 70 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF------------------- 70 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-------------------
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-------------------
Confidence 3567777546778888 88888899999986 8888776 457788888888888875221
Q ss_pred CCcCCCC-CCCCCCCcCEEeccCCCCCCCCCCCC-CCCCCCCCEEEcCCCCCcc
Q 012027 130 LGALMLP-SLSGLGSLTKLDLSDCGLGEGAIPSD-IGNLHSLKTLYLSKNNFVT 181 (472)
Q Consensus 130 ~~~~~l~-~l~~l~~L~~L~L~~~~l~~~~lp~~-l~~l~~L~~L~Ls~n~~~~ 181 (472)
..| .+.++++|+.|+|++|++.. +|.. +..++ |+.|+|.+|.+..
T Consensus 71 ----~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 71 ----VAPDAFHFTPRLSRLNLSFNALES--LSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp ----ECTTGGGSCSCCCEEECCSSCCSC--CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ----eCHHHhcCCcCCCEEeCCCCccce--eCHHHcccCC-ceEEEeeCCCccC
Confidence 122 25677778888888877753 5544 34444 7888888777763
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=1.8e-08 Score=98.37 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=52.3
Q ss_pred CCCcCEEeccCCCCCCCCCCC-CCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcc-eeeccCccccccCCC
Q 012027 141 LGSLTKLDLSDCGLGEGAIPS-DIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLE-KLKLEDCKRLQSLPQ 208 (472)
Q Consensus 141 l~~L~~L~L~~~~l~~~~lp~-~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~-~L~l~~c~~L~~lp~ 208 (472)
+++|+.|+|++|++.. +|. .|..+++|+.|+|..| ++.++. .+..+.+|+ .|++.+ .++.|+.
T Consensus 225 ~~~L~~l~L~~n~i~~--I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~ 290 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT--IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF 290 (329)
T ss_dssp CTTCCEEECTTBCCCE--ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECT
T ss_pred cCCCeEEECCCCCcce--ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEch
Confidence 7899999999998863 665 5899999999999997 887775 578999999 999987 5666654
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.70 E-value=3.5e-10 Score=112.70 Aligned_cols=106 Identities=12% Similarity=0.057 Sum_probs=53.5
Q ss_pred CCccEEEeeCCCCeecc-----cccc-CCcCCcEEEeecCcCCCccCccc-CCCCCCCEEEccCCCCchhh----hhhh-
Q 012027 2 ECLRELLLDKTDIKEMP-----LSIE-LLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFKFENL----LETV- 69 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-----~si~-~L~~L~~L~L~~c~~l~~lp~~i-~~L~~L~~L~Ls~c~~l~~l----p~~l- 69 (472)
++|+.|+|++|.|.... ..+. ..++|+.|+|++|..-..-...+ ..+++|++|+|++|.....- ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45667777776665321 1122 22566777776665211111111 23456666777666543322 2222
Q ss_pred CCCCCCCEEeeeCccCCC-----CCccccCCCCCcEEEecCCC
Q 012027 70 GQVESLEELDISGTAIRC-----PPSSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 70 ~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~ 107 (472)
....+|++|+|++|.+.. ++..+..+++|++|+|++|.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 234566666666666542 33334555666666666654
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.54 E-value=7.6e-08 Score=95.19 Aligned_cols=167 Identities=15% Similarity=0.098 Sum_probs=107.4
Q ss_pred eccccccCCcCCcEEEeecCcC---------CCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCC
Q 012027 16 EMPLSIELLSGLVQLTLKGCKN---------LVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIR 86 (472)
Q Consensus 16 ~lp~si~~L~~L~~L~L~~c~~---------l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 86 (472)
.+..++..+++|+.|.+.+... ...++..+..+++|+.|+|++|..+ .++. + .+++|++|++..+.+.
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLP 206 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCC
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCC
Confidence 3456677888999998865321 1124444566789999999987433 3444 3 3789999999888765
Q ss_pred C-CCccc--cCCCCCcEEEecCCCCC--CCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCC
Q 012027 87 C-PPSSI--FLMKNLKTLSFRGCNGP--PSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPS 161 (472)
Q Consensus 87 ~-lp~~i--~~l~~L~~L~L~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~ 161 (472)
. ....+ ..+++|+.|+|+.+... .......+ . .......+++|+.|+|.+|.+.+ ..+.
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l-------------~--~~l~~~~~p~Lr~L~L~~~~i~~-~~~~ 270 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF-------------R--PLFSKDRFPNLKWLGIVDAEEQN-VVVE 270 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT-------------G--GGSCTTTCTTCCEEEEESCTTHH-HHHH
T ss_pred hHHHHHHHHccCCCCcEEEEeccccccccchhHHHH-------------H--HHHhcCCCCCcCEEeCCCCCCch-HHHH
Confidence 2 11223 26889999998643210 00000000 0 01112357899999999998752 1111
Q ss_pred C---CCCCCCCCEEEcCCCCCcc-----CCcccCCCCCcceeeccCcc
Q 012027 162 D---IGNLHSLKTLYLSKNNFVT-----LPASINCLFNLEKLKLEDCK 201 (472)
Q Consensus 162 ~---l~~l~~L~~L~Ls~n~~~~-----lp~~i~~l~~L~~L~l~~c~ 201 (472)
. .+.+++|+.|+|+.|.+.. ++..+..+++|+.|+|++|.
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 1 1357899999999998873 56666788999999999885
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=1.6e-08 Score=99.98 Aligned_cols=174 Identities=19% Similarity=0.115 Sum_probs=105.1
Q ss_pred CcCCcEEEeecCcCC--------CccCcccCCCCCCCEEEccCCCC---------chhhhhhhCCCCCCCEEeeeCccCC
Q 012027 24 LSGLVQLTLKGCKNL--------VRLPSNINSLKSLKTLNLLGCFK---------FENLLETVGQVESLEELDISGTAIR 86 (472)
Q Consensus 24 L~~L~~L~L~~c~~l--------~~lp~~i~~L~~L~~L~Ls~c~~---------l~~lp~~l~~l~~L~~L~L~~~~i~ 86 (472)
+..++.|.+..+..- ..+..++.++++|+.|.+.+... ...+...+..+++|+.|+++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 345667777654411 12334456788999998865321 1135566778899999999987423
Q ss_pred CCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC--CCCCCCcCEEeccCC--CCC-CC---C
Q 012027 87 CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS--LSGLGSLTKLDLSDC--GLG-EG---A 158 (472)
Q Consensus 87 ~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~--l~~l~~L~~L~L~~~--~l~-~~---~ 158 (472)
.++. + .+++|+.|++..|..... .+.. ...+++|+.|+|+.+ +.. +. .
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~----------------------~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDS----------------------VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHH----------------------HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred eecc-c-cCCCCcEEEEecCCCChH----------------------HHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 4554 4 388999999987652110 0001 125778999988632 111 10 0
Q ss_pred CCCCC--CCCCCCCEEEcCCCCCcc-CCccc---CCCCCcceeeccCccccc----cCCCC---CCCccEEEEccC
Q 012027 159 IPSDI--GNLHSLKTLYLSKNNFVT-LPASI---NCLFNLEKLKLEDCKRLQ----SLPQL---PPNVEKVRVNGC 221 (472)
Q Consensus 159 lp~~l--~~l~~L~~L~Ls~n~~~~-lp~~i---~~l~~L~~L~l~~c~~L~----~lp~l---p~~L~~L~~~~c 221 (472)
+...+ ..+++|+.|+|.+|.+.. .+..+ ..+++|+.|+|+.|..-. .++.- .++|+.|++++|
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 11122 357899999999988762 22122 357899999998875221 12221 257888888776
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.53 E-value=2.9e-06 Score=85.07 Aligned_cols=168 Identities=10% Similarity=0.149 Sum_probs=108.1
Q ss_pred CccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEee
Q 012027 3 CLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDI 80 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L 80 (472)
+|+.+.+.. +++.++. .|.++.+|+.++|.+++ +..+|.......+|+.+.+..+ +..++ ..+.++++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 467777775 6777754 47889999999998754 7778776555788999988753 44444 45778888999888
Q ss_pred eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCC---
Q 012027 81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEG--- 157 (472)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~--- 157 (472)
..+ +..++.....-.+|+.+.+.+.-.. .....|.++++|+.+++.++.+...
T Consensus 234 ~~~-l~~I~~~aF~~~~L~~i~lp~~i~~-----------------------I~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRESGITTVKLPNGVTN-----------------------IASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp CTT-CCEECTTTTTTCCCSEEEEETTCCE-----------------------ECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred CCC-ccCccccccccCCccEEEeCCCccE-----------------------EChhHhhCCCCCCEEEeCCccccCCccc
Confidence 764 5555544444477888887543210 0112266677777777766544210
Q ss_pred CC-CCCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccC
Q 012027 158 AI-PSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLED 199 (472)
Q Consensus 158 ~l-p~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~ 199 (472)
.+ +..|..+++|+.+.|. ++++.++. .+..|++|+.+.|..
T Consensus 290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT
T ss_pred EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc
Confidence 12 2346677777777776 34665543 456667777777744
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.53 E-value=1.5e-06 Score=87.30 Aligned_cols=171 Identities=15% Similarity=0.166 Sum_probs=121.6
Q ss_pred CccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027 3 CLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI 80 (472)
Q Consensus 3 ~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (472)
+|+.+.|..+ ++.|+.. |.+ .+|+.+.+.+ .++.++ ..+.++.+|+.+++.++ .+..++...-...+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence 5777887654 7777654 555 4799999986 467776 46888999999999885 46667766555789999999
Q ss_pred eCccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCC
Q 012027 81 SGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAI 159 (472)
Q Consensus 81 ~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~l 159 (472)
..+ +..++. .+.++++|+.+.+..+- ... ....|.+ ++|+.+.+.. ++. .+
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~l--~~I---------------------~~~aF~~-~~L~~i~lp~-~i~--~I 262 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPENV--STI---------------------GQEAFRE-SGITTVKLPN-GVT--NI 262 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTTC--CEE---------------------CTTTTTT-CCCSEEEEET-TCC--EE
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCCc--cCc---------------------ccccccc-CCccEEEeCC-Ccc--EE
Confidence 854 666643 46688999999987632 110 1112444 6799999954 343 24
Q ss_pred -CCCCCCCCCCCEEEcCCCCCc-----cCC-cccCCCCCcceeeccCccccccCCC
Q 012027 160 -PSDIGNLHSLKTLYLSKNNFV-----TLP-ASINCLFNLEKLKLEDCKRLQSLPQ 208 (472)
Q Consensus 160 -p~~l~~l~~L~~L~Ls~n~~~-----~lp-~~i~~l~~L~~L~l~~c~~L~~lp~ 208 (472)
...|..+++|+.+++.++.+. .++ ..+..|++|+.+.+.+ .++.++.
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~ 316 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQ 316 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhh
Confidence 456899999999999988765 444 4678899999998874 3555543
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.32 E-value=2.1e-07 Score=92.44 Aligned_cols=106 Identities=15% Similarity=0.087 Sum_probs=75.1
Q ss_pred CCccEEEeeCCCCee--ccccccCCcCCcEEEeecCcCCCc----cCccc-CCCCCCCEEEccCCCCch----hhhhhhC
Q 012027 2 ECLRELLLDKTDIKE--MPLSIELLSGLVQLTLKGCKNLVR----LPSNI-NSLKSLKTLNLLGCFKFE----NLLETVG 70 (472)
Q Consensus 2 ~~L~~L~L~~~~l~~--lp~si~~L~~L~~L~L~~c~~l~~----lp~~i-~~L~~L~~L~Ls~c~~l~----~lp~~l~ 70 (472)
++|++|+|++|.|.. +......+++|+.|+|++|..... +...+ ...++|++|+|++|.... .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 589999999999873 233234578999999999863222 22222 346789999999997533 3667778
Q ss_pred CCCCCCEEeeeCccCCC-----CCccccCCCCCcEEEecCCC
Q 012027 71 QVESLEELDISGTAIRC-----PPSSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 71 ~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~ 107 (472)
.+++|++|+|++|.|.. ++..+...++|+.|+|++|.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 89999999999999873 23445555666666666654
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.97 E-value=3e-06 Score=75.36 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=75.3
Q ss_pred CCccEEEeeCC-CCe-----eccccccCCcCCcEEEeecCcCCC----ccCcccCCCCCCCEEEccCCCCchh----hhh
Q 012027 2 ECLRELLLDKT-DIK-----EMPLSIELLSGLVQLTLKGCKNLV----RLPSNINSLKSLKTLNLLGCFKFEN----LLE 67 (472)
Q Consensus 2 ~~L~~L~L~~~-~l~-----~lp~si~~L~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~Ls~c~~l~~----lp~ 67 (472)
++|++|+|++| .|. .+...+...++|++|+|++|..-. .+...+...++|++|+|++|..-.. +.+
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 56888888888 775 245556677888888888876221 2344455567888888888765443 567
Q ss_pred hhCCCCCCCEEee--eCccCCC-----CCccccCCCCCcEEEecCCC
Q 012027 68 TVGQVESLEELDI--SGTAIRC-----PPSSIFLMKNLKTLSFRGCN 107 (472)
Q Consensus 68 ~l~~l~~L~~L~L--~~~~i~~-----lp~~i~~l~~L~~L~L~~~~ 107 (472)
.+...++|++|+| ++|.|.. +...+...++|+.|++++|.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 7777788888888 7788773 34455666888888888775
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.92 E-value=0.00015 Score=72.34 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=49.5
Q ss_pred CCCCCCcCEEeccCCCCCCCCCC-CCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCCCCCccE
Q 012027 138 LSGLGSLTKLDLSDCGLGEGAIP-SDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQLPPNVEK 215 (472)
Q Consensus 138 l~~l~~L~~L~L~~~~l~~~~lp-~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~ 215 (472)
+..+.+|+.+.+..+ +. .++ .++..+++|+.++|.. .++.++. .+.+|.+|+.+.+..+ ++.|..-
T Consensus 293 F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~------ 360 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGAN------ 360 (394)
T ss_dssp TTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTT------
T ss_pred ccccccccccccccc-cc--eechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHH------
Confidence 455666666666543 21 132 3466667777777643 3555532 4455666666655332 2222221
Q ss_pred EEEccCCCcccccccccccccccceeeecccccc
Q 012027 216 VRVNGCASLVTLLGALKLRKSSCTIIDFVDSLKL 249 (472)
Q Consensus 216 L~~~~c~sL~~~~~~~~~~~~~~~~~~f~~c~~l 249 (472)
-..+|++|+.+..+..+... -..|.+|.+|
T Consensus 361 -aF~~C~~L~~i~lp~~~~~~---~~~F~~c~~L 390 (394)
T 4fs7_A 361 -AFQGCINLKKVELPKRLEQY---RYDFEDTTKF 390 (394)
T ss_dssp -TBTTCTTCCEEEEEGGGGGG---GGGBCTTCEE
T ss_pred -HhhCCCCCCEEEECCCCEEh---hheecCCCCC
Confidence 14677777776655433221 1236677665
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=2.1e-05 Score=68.86 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=60.9
Q ss_pred cCCcEEEeecCcCCCc-cCcccCCCCCCCEEEccCCCCchh-hhhhhCCC----CCCCEEeeeCcc-CCC-CCccccCCC
Q 012027 25 SGLVQLTLKGCKNLVR-LPSNINSLKSLKTLNLLGCFKFEN-LLETVGQV----ESLEELDISGTA-IRC-PPSSIFLMK 96 (472)
Q Consensus 25 ~~L~~L~L~~c~~l~~-lp~~i~~L~~L~~L~Ls~c~~l~~-lp~~l~~l----~~L~~L~L~~~~-i~~-lp~~i~~l~ 96 (472)
.+|+.||+++|. ++. --..+.++++|++|+|++|..+.. --..+..+ ++|++|+|++|. |+. --..+.+++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 468999999987 432 223467889999999999976643 23445554 479999999974 762 123466789
Q ss_pred CCcEEEecCCCCCC
Q 012027 97 NLKTLSFRGCNGPP 110 (472)
Q Consensus 97 ~L~~L~L~~~~~~~ 110 (472)
+|+.|++++|....
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 99999999998654
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=2.4e-05 Score=68.47 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=63.2
Q ss_pred CccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccC-cccCCC----CCCCEEEccCCCCchh-hhhhhCCCCCC
Q 012027 3 CLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLP-SNINSL----KSLKTLNLLGCFKFEN-LLETVGQVESL 75 (472)
Q Consensus 3 ~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp-~~i~~L----~~L~~L~Ls~c~~l~~-lp~~l~~l~~L 75 (472)
+|+.|+|+++.|+.. -..+..+++|+.|+|++|..++.-- ..+..+ ++|++|+|++|..+.. --..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 589999999988732 2337889999999999998776421 224444 4799999999986654 23456789999
Q ss_pred CEEeeeCcc-CC
Q 012027 76 EELDISGTA-IR 86 (472)
Q Consensus 76 ~~L~L~~~~-i~ 86 (472)
++|+++++. ++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 999999984 44
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.72 E-value=2.6e-05 Score=73.36 Aligned_cols=94 Identities=20% Similarity=0.164 Sum_probs=60.1
Q ss_pred EEeeCCCCeecccc----ccCCcCCcEEEeecCcCCC--ccCcccCCCCCCCEEEccCCCCchhhhhhhCCCC--CCCEE
Q 012027 7 LLLDKTDIKEMPLS----IELLSGLVQLTLKGCKNLV--RLPSNINSLKSLKTLNLLGCFKFENLLETVGQVE--SLEEL 78 (472)
Q Consensus 7 L~L~~~~l~~lp~s----i~~L~~L~~L~L~~c~~l~--~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~--~L~~L 78 (472)
+++..|....++.. ..++++|+.|+|++|+.-. .+|..+..+++|++|+|++|..- .+ ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhhhhcccCCcceE
Confidence 44455544333322 2567888889988876322 34455567888999999886543 33 2233333 88899
Q ss_pred eeeCccCC-CCC-------ccccCCCCCcEEE
Q 012027 79 DISGTAIR-CPP-------SSIFLMKNLKTLS 102 (472)
Q Consensus 79 ~L~~~~i~-~lp-------~~i~~l~~L~~L~ 102 (472)
+|++|.+. .+| ..+..+++|+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 99988886 344 2356788888886
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.64 E-value=1.7e-06 Score=77.06 Aligned_cols=42 Identities=19% Similarity=0.107 Sum_probs=24.5
Q ss_pred cCCCCCCCEEEccCC-CCch----hhhhhhCCCCCCCEEeeeCccCC
Q 012027 45 INSLKSLKTLNLLGC-FKFE----NLLETVGQVESLEELDISGTAIR 86 (472)
Q Consensus 45 i~~L~~L~~L~Ls~c-~~l~----~lp~~l~~l~~L~~L~L~~~~i~ 86 (472)
+...++|++|+|++| ..-. .+.+.+...++|++|+|++|.|.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 445666777777766 3322 24455555666666666666654
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.52 E-value=0.0023 Score=63.59 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=8.3
Q ss_pred CCCCCCCCEEEcCCC
Q 012027 163 IGNLHSLKTLYLSKN 177 (472)
Q Consensus 163 l~~l~~L~~L~Ls~n 177 (472)
+..+..|+.+.+..+
T Consensus 249 f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 249 FYGCTDLESISIQNN 263 (394)
T ss_dssp TTTCSSCCEEEECCT
T ss_pred ccccccceeEEcCCC
Confidence 445556666665544
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.44 E-value=0.0036 Score=62.16 Aligned_cols=98 Identities=14% Similarity=0.226 Sum_probs=48.6
Q ss_pred CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCCCCCccEE
Q 012027 138 LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQLPPNVEKV 216 (472)
Q Consensus 138 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L 216 (472)
+.++..|+.+.+...... .-...+..+++|+.+.+. +.++.++. .+..+.+|+.+.+... ++.|.+-
T Consensus 261 F~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~------- 328 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDD------- 328 (394)
T ss_dssp TTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTT-------
T ss_pred eeecccccEEecccccce--ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHh-------
Confidence 445566666666543221 112345666777777764 34555543 3455666666665431 2222221
Q ss_pred EEccCCCcccccccccccccccceeeecccccc
Q 012027 217 RVNGCASLVTLLGALKLRKSSCTIIDFVDSLKL 249 (472)
Q Consensus 217 ~~~~c~sL~~~~~~~~~~~~~~~~~~f~~c~~l 249 (472)
-..+|++|+.+..+..+... ....|.+|.+|
T Consensus 329 aF~~C~~L~~i~ip~sv~~I--~~~aF~~C~~L 359 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSSVTKI--PESAFSNCTAL 359 (394)
T ss_dssp TTTTCTTCCEEEECTTCCBC--CGGGGTTCTTC
T ss_pred HhhCCCCCCEEEECcccCEE--hHhHhhCCCCC
Confidence 13467777766554332211 11226777666
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.20 E-value=0.00018 Score=67.48 Aligned_cols=67 Identities=24% Similarity=0.245 Sum_probs=52.0
Q ss_pred CCCCcCEEeccCCCCCCC-CCCCCCCCCCCCCEEEcCCCCCccCCcccCCCC--CcceeeccCccccccCC
Q 012027 140 GLGSLTKLDLSDCGLGEG-AIPSDIGNLHSLKTLYLSKNNFVTLPASINCLF--NLEKLKLEDCKRLQSLP 207 (472)
Q Consensus 140 ~l~~L~~L~L~~~~l~~~-~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~--~L~~L~l~~c~~L~~lp 207 (472)
++++|+.|+|++|++..- .+|..+..+++|+.|+|++|.+..+. .+..+. +|+.|+|++|+.-..+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 467899999999998630 34566678999999999999999773 344444 89999999988655444
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.69 E-value=0.032 Score=55.14 Aligned_cols=80 Identities=15% Similarity=0.310 Sum_probs=54.1
Q ss_pred CCCCCCcCEEeccCCCCCCCCCC-CCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCCCCCccE
Q 012027 138 LSGLGSLTKLDLSDCGLGEGAIP-SDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQLPPNVEK 215 (472)
Q Consensus 138 l~~l~~L~~L~L~~~~l~~~~lp-~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~ 215 (472)
+.++.+|+.+.+... +. .++ ..|..+.+|+.++|..+ ++.+.. .+.+|.+|+.+.+... ++.|.+-
T Consensus 284 F~~c~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~------ 351 (394)
T 4gt6_A 284 FMNCPALQDIEFSSR-IT--ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPES------ 351 (394)
T ss_dssp TTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCGG------
T ss_pred cccccccccccCCCc-cc--ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhHh------
Confidence 667889999998643 32 244 45889999999999754 666654 5778889998887532 3444322
Q ss_pred EEEccCCCccccccc
Q 012027 216 VRVNGCASLVTLLGA 230 (472)
Q Consensus 216 L~~~~c~sL~~~~~~ 230 (472)
-..+|++|+.+...
T Consensus 352 -aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 352 -AFSNCTALNNIEYS 365 (394)
T ss_dssp -GGTTCTTCCEEEES
T ss_pred -HhhCCCCCCEEEEC
Confidence 14578888776543
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.32 E-value=0.14 Score=50.01 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=48.5
Q ss_pred CCCCCCcCEEeccCCCCCCCCCC-CCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCCCCCccE
Q 012027 138 LSGLGSLTKLDLSDCGLGEGAIP-SDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQLPPNVEK 215 (472)
Q Consensus 138 l~~l~~L~~L~L~~~~l~~~~lp-~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~ 215 (472)
+.++.+|+.+.+... +. .++ ..+..+++|+.+.+.++.++.++. .+.++.+|+.+.|... ++.|..-
T Consensus 259 F~~~~~l~~i~l~~~-i~--~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~------ 327 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VK--TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVY------ 327 (379)
T ss_dssp TTTCTTCCEEEECCC-CS--EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTT------
T ss_pred cceeehhcccccccc-ce--eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHH------
Confidence 566677777777543 21 133 346778888888888777777654 4667777777766321 2222211
Q ss_pred EEEccCCCccccccc
Q 012027 216 VRVNGCASLVTLLGA 230 (472)
Q Consensus 216 L~~~~c~sL~~~~~~ 230 (472)
-..+|.+|+.+..+
T Consensus 328 -aF~~C~~L~~i~ip 341 (379)
T 4h09_A 328 -AFKNCKALSTISYP 341 (379)
T ss_dssp -TTTTCTTCCCCCCC
T ss_pred -HhhCCCCCCEEEEC
Confidence 13467777766544
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.07 E-value=0.059 Score=52.78 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=41.2
Q ss_pred CCCCCCcCEEeccCCCCCCCCCC-CCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeec
Q 012027 138 LSGLGSLTKLDLSDCGLGEGAIP-SDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKL 197 (472)
Q Consensus 138 l~~l~~L~~L~L~~~~l~~~~lp-~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l 197 (472)
+.++.+|+.+.+.++.+.. ++ ..|..+.+|+.+.|.. +++.+.. .+.++++|+.+.+
T Consensus 282 F~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccccccce--ehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEE
Confidence 7788999999998877642 44 4688999999999864 3666654 4556666666544
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.97 E-value=0.047 Score=44.94 Aligned_cols=55 Identities=25% Similarity=0.352 Sum_probs=40.9
Q ss_pred CEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcc-cCCCCCcceeeccCcc
Q 012027 145 TKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPAS-INCLFNLEKLKLEDCK 201 (472)
Q Consensus 145 ~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~-i~~l~~L~~L~l~~c~ 201 (472)
..++.++.+++...+|..+. ++|+.|+|++|+++.||.. +..+++|+.|+|.+|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 46777777775224776543 5689999999999988865 4678888999888875
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.70 E-value=0.042 Score=48.71 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=18.7
Q ss_pred CCCCCCCEEEccCCCCchh----hhhhhCCCCCCCEEeeeCccCC
Q 012027 46 NSLKSLKTLNLLGCFKFEN----LLETVGQVESLEELDISGTAIR 86 (472)
Q Consensus 46 ~~L~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~L~~~~i~ 86 (472)
..-+.|+.|+|++|..-.. +.+.+..-+.|++|+|++|.|.
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3334555555555443321 3333333445555555555544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.43 E-value=0.048 Score=48.32 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=37.7
Q ss_pred CccEEEeeCC-CCe-----eccccccCCcCCcEEEeecCcCCC----ccCcccCCCCCCCEEEccCCCCch----hhhhh
Q 012027 3 CLRELLLDKT-DIK-----EMPLSIELLSGLVQLTLKGCKNLV----RLPSNINSLKSLKTLNLLGCFKFE----NLLET 68 (472)
Q Consensus 3 ~L~~L~L~~~-~l~-----~lp~si~~L~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~Ls~c~~l~----~lp~~ 68 (472)
.|+.|+|+++ .|. .+-..+..=+.|+.|+|++|..-. .+...+..-+.|++|+|++|..-. .+.+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4556666553 443 123334444556666666654211 122223333556666666654432 23444
Q ss_pred hCCCCCCCEEeeeC
Q 012027 69 VGQVESLEELDISG 82 (472)
Q Consensus 69 l~~l~~L~~L~L~~ 82 (472)
+..-+.|++|+|++
T Consensus 122 L~~N~tL~~L~L~n 135 (197)
T 1pgv_A 122 TLVTQSIVEFKADN 135 (197)
T ss_dssp TTTTCCCSEEECCC
T ss_pred HhhCCceeEEECCC
Confidence 44445555555554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.27 E-value=0.11 Score=42.57 Aligned_cols=52 Identities=13% Similarity=0.147 Sum_probs=33.1
Q ss_pred EEEccCCCCch--hhhhhhCCCCCCCEEeeeCccCCCCCcc-ccCCCCCcEEEecCCC
Q 012027 53 TLNLLGCFKFE--NLLETVGQVESLEELDISGTAIRCPPSS-IFLMKNLKTLSFRGCN 107 (472)
Q Consensus 53 ~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 107 (472)
+++.++ ..+. .+|..+ -.+|++|+|++|.|+.+|.. +..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-SCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-CCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 455555 3344 566543 34577777777777777654 4567778888877764
No 165
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=73.91 E-value=0.87 Score=24.81 Aligned_cols=13 Identities=54% Similarity=0.568 Sum_probs=10.6
Q ss_pred CCCCCCCCCCccc
Q 012027 457 DDYDEEPQPNRFR 469 (472)
Q Consensus 457 ~~~~~~~~~~~~~ 469 (472)
-|+||||..||-|
T Consensus 14 wdedeepprkrkr 26 (28)
T 3ukw_C 14 WDEDEEPPRKRKR 26 (28)
T ss_dssp CCGGGSCCSSCCC
T ss_pred cccccCcchhhhc
Confidence 4688999999876
No 166
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=42.18 E-value=12 Score=20.37 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=8.6
Q ss_pred CCCCCCCCCCccc
Q 012027 457 DDYDEEPQPNRFR 469 (472)
Q Consensus 457 ~~~~~~~~~~~~~ 469 (472)
-||+..|+.||-|
T Consensus 14 wdddddppkkrrr 26 (28)
T 3ukx_C 14 WDDDDDPPKKRRR 26 (28)
T ss_dssp CCCSSSCCSCCCC
T ss_pred cccCCCchhhhhc
Confidence 3566777777754
No 167
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=23.40 E-value=30 Score=22.38 Aligned_cols=18 Identities=28% Similarity=0.663 Sum_probs=13.1
Q ss_pred cccccCCCCCCCccEEEEccceeeeccc
Q 012027 387 EREKHCPAGSGTGLKVKRCGFHPGYMHE 414 (472)
Q Consensus 387 ~~~~~~~~~~~~~~~Vk~CGv~liy~~d 414 (472)
.++..||. ||+|++|+--
T Consensus 21 lP~IrCpy----------CGyrii~KvR 38 (48)
T 4ayb_P 21 LPGVRCPY----------CGYKIIFMVR 38 (48)
T ss_dssp CSSSCCTT----------TCCSCEECCC
T ss_pred CCCcccCc----------cCcEEEEEec
Confidence 34566666 9999999753
Done!