BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>012029
MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRK
SKNKAGSGTTKSFGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAG
RVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEV
HKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESL
TVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELR
RRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEY
FILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRV
LFHAGGKRQLYGFMALKEDLDVFNQHCHGSSFSPLSLSLSLTHTHTHVHRHA

High Scoring Gene Products

Symbol, full name Information P value
SGS3
SUPPRESSOR OF GENE SILENCING 3
protein from Arabidopsis thaliana 1.1e-96

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  012029
        (472 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2171716 - symbol:SGS3 "SUPPRESSOR OF GENE SILE...   961  1.1e-96   1


>TAIR|locus:2171716 [details] [associations]
            symbol:SGS3 "SUPPRESSOR OF GENE SILENCING 3" species:3702
            "Arabidopsis thaliana" [GO:0005737 "cytoplasm" evidence=ISM;IDA]
            [GO:0009616 "virus induced gene silencing" evidence=RCA;IMP]
            [GO:0010050 "vegetative phase change" evidence=RCA;IMP] [GO:0010267
            "production of ta-siRNAs involved in RNA interference"
            evidence=RCA;IMP] [GO:0051607 "defense response to virus"
            evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0035196
            "production of miRNAs involved in gene silencing by miRNA"
            evidence=RCA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
            [GO:0010025 "wax biosynthetic process" evidence=IGI] GO:GO:0005783
            GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0048471
            GO:GO:0019048 GO:GO:0010025 GO:GO:0010267 GO:GO:0010050
            EMBL:AB025633 GO:GO:0050688 GO:GO:0009616 EMBL:AF239719
            EMBL:BT002944 EMBL:BT004380 IPI:IPI00531176 RefSeq:NP_197747.1
            UniGene:At.31001 ProteinModelPortal:Q9LDX1 DIP:DIP-29658N
            MINT:MINT-7014693 STRING:Q9LDX1 PaxDb:Q9LDX1 PRIDE:Q9LDX1
            EnsemblPlants:AT5G23570.1 GeneID:832422 KEGG:ath:AT5G23570
            TAIR:At5g23570 eggNOG:NOG259720 HOGENOM:HOG000085166
            InParanoid:Q9LDX1 OMA:PPMVIIM PhylomeDB:Q9LDX1
            ProtClustDB:CLSN2914848 Genevestigator:Q9LDX1 InterPro:IPR005380
            InterPro:IPR005381 Pfam:PF03468 Pfam:PF03470 Uniprot:Q9LDX1
        Length = 625

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 208/426 (48%), Positives = 256/426 (60%)

Query:    21 KGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQNSNY 80
             K KNV      +V+ L   +A   L S+QDDGG E  V   KNK   G T      + N 
Sbjct:    10 KEKNVQGGYRPEVEQLVQGLAGTRLASSQDDGG-EWEVISKKNKNKPGNTSGKTWVSQNS 68

Query:    81 KAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMAT 140
                      Q+ G RG+  SGR    +    N + +     ++ R +  +   + N +A 
Sbjct:    69 NP-PRAWGGQQQG-RGSNVSGRGNNVSGRG-NGNGRGIQANISGRGRALSRKYDNNFVAP 125

Query:   141 QTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHXXXXXXXXXXXXXXXXXXX 200
                 RPPLE GWNWQ+R GS      ++  D E    D+V                    
Sbjct:   126 PPVSRPPLEGGWNWQARGGSAQHTAVQEFPDVE----DDVDNASEEENDSDALDDSDDDL 181

Query:   201 XXXXXXXXXXXXXXXTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQGG 260
                             SQKSH +RK+++WFKKFF SL+SL++E+INEP RQWHCPACQ G
Sbjct:   182 ASDDYDSD-------VSQKSHGSRKQNKWFKKFFGSLDSLSIEQINEPQRQWHCPACQNG 234

Query:   261 PGAIDWYRGLQPLMTHAKTKGSKRVKLHXXXXXXXXXXXXXXGTSVIPAGEVFGKWKGLK 320
             PGAIDWY  L PL+ HA+TKG++RVKLH              G SVIP GE++G+WKGL 
Sbjct:   235 PGAIDWYN-LHPLLAHARTKGARRVKLHRELAEVLEKDLQMRGASVIPCGEIYGQWKGLG 293

Query:   321 DTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRG 380
             + EKD+EIVWPPMVIIMNTRLDKD+NDKW GMGNQELLEYF  Y A+RARHSYGPQGHRG
Sbjct:   294 EDEKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEALRARHSYGPQGHRG 353

Query:   381 MSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDL 440
             MSVL+FESSA GYLEAERLH+  AE G DR +W    +R +F +GG RQLYGF+A K+DL
Sbjct:   354 MSVLMFESSATGYLEAERLHRELAEMGLDRIAWGQ--KRSMF-SGGVRQLYGFLATKQDL 410

Query:   441 DVFNQH 446
             D+FNQH
Sbjct:   411 DIFNQH 416


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.130   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      472       400   0.00098  117 3  11 23  0.46    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  625 (66 KB)
  Total size of DFA:  292 KB (2149 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.45u 0.10s 33.55t   Elapsed:  00:00:02
  Total cpu time:  33.45u 0.10s 33.55t   Elapsed:  00:00:02
  Start:  Tue May 21 06:53:58 2013   End:  Tue May 21 06:54:00 2013

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