BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012031
         (472 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P54437|YRKJ_BACSU UPF0721 transmembrane protein YrkJ OS=Bacillus subtilis (strain
           168) GN=yrkJ PE=3 SV=1
          Length = 261

 Score = 43.1 bits (100), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 60/114 (52%), Gaps = 11/114 (9%)

Query: 311 KGRRKIASKGDEGTKWRASQLVFYCACGITAGMVGGLLGLGGGFILGPLFLE-LGIPPQV 369
           KG+     K     KW AS L F        G V G+LG GG FIL P+ L  L IP +V
Sbjct: 131 KGQEHSEDKEVIFNKWLASSLAFII------GGVSGILGAGGAFILVPIMLSILNIPVRV 184

Query: 370 SSATALFAITFSSSM--SVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 421
           + A++L AITF SS+  +V +    +   VP AL     S+IA+ +G  V +K+
Sbjct: 185 TVASSL-AITFLSSIGATVGKVITGQVLFVP-ALVLMITSLIASPIGASVGQKV 236


>sp|Q57883|Y441_METJA UPF0721 transmembrane protein MJ0441 OS=Methanocaldococcus
           jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
           10045 / NBRC 100440) GN=MJ0441 PE=3 SV=1
          Length = 267

 Score = 37.4 bits (85), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 15/103 (14%)

Query: 337 CGITAGMVGGLLGLGGGFILGP----LFLELGIPPQVSSA--TALFAITFSSSMSVVEYY 390
            G   G++G L G+GGGF++ P    +F   GIP  V  A  T+LF +  +S +S+  + 
Sbjct: 19  VGFIVGILGSLFGIGGGFLVAPILTFIFDYFGIPDGVKFAVGTSLFVVFINSIISIFRHA 78

Query: 391 LLKRFP---------VPYALYFFALSIIAAFVGQHVLKKLIKI 424
            +K            +     +F+  ++  F+   +LKKL  I
Sbjct: 79  KIKNINWKASITIGIISLVFSYFSGFLVVNFIDSAILKKLFGI 121


>sp|P44054|Y806_HAEIN UPF0721 transmembrane protein HI_0806 OS=Haemophilus influenzae
           (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0806
           PE=3 SV=1
          Length = 268

 Score = 34.7 bits (78), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 6/43 (13%)

Query: 337 CGITAGMVGGLLGLGGGFILGP----LFLELGIPPQVSSATAL 375
           CGI   MV  + G+GGG ++ P    LF EL  P QV SAT+L
Sbjct: 12  CGICTNMVSAIFGIGGGVLMVPILRTLFPEL--PIQVISATSL 52


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.140    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,418,675
Number of Sequences: 539616
Number of extensions: 6767322
Number of successful extensions: 25875
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 25849
Number of HSP's gapped (non-prelim): 43
length of query: 472
length of database: 191,569,459
effective HSP length: 121
effective length of query: 351
effective length of database: 126,275,923
effective search space: 44322848973
effective search space used: 44322848973
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)