Query 012031
Match_columns 472
No_of_seqs 297 out of 1982
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:53:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10621 hypothetical protein; 100.0 1.4E-26 3.1E-31 229.5 25.9 226 77-435 11-244 (266)
2 COG0730 Predicted permeases [G 99.9 1.8E-25 3.9E-30 220.5 27.0 231 77-436 6-245 (258)
3 PF01925 TauE: Sulfite exporte 99.9 4.6E-24 9.9E-29 207.3 22.6 222 82-436 2-235 (240)
4 PRK10621 hypothetical protein; 99.3 4.5E-11 9.8E-16 118.7 15.7 104 331-435 12-115 (266)
5 COG0730 Predicted permeases [G 99.2 1.6E-10 3.6E-15 114.0 15.3 104 331-434 7-110 (258)
6 PF01925 TauE: Sulfite exporte 98.9 8E-09 1.7E-13 100.3 12.7 100 335-435 2-101 (240)
7 PF04018 DUF368: Domain of unk 80.4 66 0.0014 32.1 22.3 81 332-432 143-223 (257)
8 TIGR02840 spore_YtaF putative 77.2 55 0.0012 31.3 12.8 52 143-194 28-83 (206)
9 PF02673 BacA: Bacitracin resi 75.8 89 0.0019 31.1 15.6 85 347-431 159-249 (259)
10 PRK11469 hypothetical protein; 70.2 99 0.0022 29.2 16.5 42 152-194 48-89 (188)
11 KOG0569 Permease of the major 64.6 2.2E+02 0.0047 31.1 23.1 35 128-162 138-172 (485)
12 PF02652 Lactate_perm: L-lacta 59.4 41 0.0009 36.9 8.7 48 76-124 99-147 (522)
13 PRK10263 DNA translocase FtsK; 49.0 2E+02 0.0042 35.3 12.4 18 334-351 65-82 (1355)
14 COG2119 Predicted membrane pro 47.9 57 0.0012 30.9 6.4 51 142-192 134-184 (190)
15 PF04066 MrpF_PhaF: Multiple r 47.6 1E+02 0.0022 23.0 6.7 53 367-419 2-54 (55)
16 PF01169 UPF0016: Uncharacteri 43.8 52 0.0011 26.5 4.9 43 143-185 35-77 (78)
17 PF11169 DUF2956: Protein of u 41.0 82 0.0018 26.9 5.7 16 254-272 84-99 (103)
18 COG1968 BacA Undecaprenyl pyro 40.6 4E+02 0.0086 26.8 18.7 31 145-175 84-114 (270)
19 PRK10420 L-lactate permease; P 39.8 51 0.0011 36.5 5.6 48 77-124 115-162 (551)
20 TIGR00795 lctP L-lactate trans 39.6 65 0.0014 35.5 6.3 73 52-124 80-153 (530)
21 COG1346 LrgB Putative effector 35.9 4.3E+02 0.0094 25.9 15.6 31 392-422 142-172 (230)
22 PRK09695 glycolate transporter 35.5 62 0.0013 36.0 5.4 48 77-124 115-162 (560)
23 COG3180 AbrB Putative ammonia 33.7 4.4E+02 0.0095 27.6 10.8 97 329-447 9-105 (352)
24 PRK11588 hypothetical protein; 32.9 7E+02 0.015 27.4 13.0 16 111-126 185-200 (506)
25 PRK12554 undecaprenyl pyrophos 32.2 5.4E+02 0.012 25.9 15.2 48 143-190 83-131 (276)
26 PRK00281 undecaprenyl pyrophos 30.9 5.6E+02 0.012 25.7 17.9 44 347-390 163-206 (268)
27 PF09527 ATPase_gene1: Putativ 30.6 2.2E+02 0.0047 20.9 6.2 47 146-192 5-52 (55)
28 PF08566 Pam17: Mitochondrial 29.6 2.3E+02 0.0049 26.6 7.2 15 362-376 71-85 (173)
29 PF01169 UPF0016: Uncharacteri 29.5 1.9E+02 0.0042 23.2 6.0 34 400-433 40-73 (78)
30 KOG2881 Predicted membrane pro 27.4 1.9E+02 0.0041 29.1 6.6 55 145-199 103-157 (294)
31 COG1971 Predicted membrane pro 26.9 5.6E+02 0.012 24.4 17.9 50 144-194 36-89 (190)
32 PRK12600 putative monovalent c 26.1 3.8E+02 0.0082 22.4 7.4 55 366-420 30-84 (94)
33 PF11700 ATG22: Vacuole efflux 26.0 3.5E+02 0.0075 29.3 9.1 20 362-381 311-330 (477)
34 TIGR02230 ATPase_gene1 F0F1-AT 24.3 2.3E+02 0.005 24.1 5.8 25 147-171 48-72 (100)
35 COG3619 Predicted membrane pro 24.0 6E+02 0.013 24.8 9.4 36 141-176 167-202 (226)
36 PRK06161 putative monovalent c 23.3 4.3E+02 0.0093 21.8 7.2 60 361-420 24-84 (89)
37 COG2119 Predicted membrane pro 23.2 6.6E+02 0.014 23.9 14.6 50 143-192 36-85 (190)
38 PF11833 DUF3353: Protein of u 22.1 6.9E+02 0.015 23.7 13.0 44 120-170 122-165 (194)
39 PRK04288 antiholin-like protei 21.9 7.7E+02 0.017 24.2 14.1 80 334-422 95-175 (232)
40 PRK12599 putative monovalent c 21.9 4.7E+02 0.01 21.7 7.5 59 362-420 27-86 (91)
41 KOG1629 Bax-mediated apoptosis 21.6 6E+02 0.013 24.5 8.5 14 449-462 182-195 (235)
42 COG3416 Uncharacterized protei 21.5 74 0.0016 30.6 2.5 64 47-110 79-162 (233)
43 PF09605 Trep_Strep: Hypotheti 21.3 6.8E+02 0.015 23.4 10.2 32 396-427 154-185 (186)
44 COG4280 Predicted membrane pro 20.5 4.9E+02 0.011 25.2 7.6 33 166-198 58-90 (236)
45 PRK12612 putative monovalent c 20.1 4.9E+02 0.011 21.3 7.3 55 365-419 29-83 (87)
No 1
>PRK10621 hypothetical protein; Provisional
Probab=99.95 E-value=1.4e-26 Score=229.53 Aligned_cols=226 Identities=19% Similarity=0.239 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHhCCChhhHhHHHHHH-------HHHHHHHhhCCCCCCCccchHHHH
Q 012031 77 RIVVGTIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKFS-------AVVYNLRQRHPTLDIPVIDYDLAL 149 (472)
Q Consensus 77 ~~l~~~~iG~l~g~i~~~~GiGGG~i~vP~L~~~~g~~~~~Av~ts~~s-------~~~~~~~~~~~~~~~~~Id~~l~~ 149 (472)
..++.+++|+++|+++++.| |||.+.+|+|.. +|+||++|++||++. +...+.+++ .+||+.+.
T Consensus 11 ~~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~-~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~-------~v~~~~~~ 81 (266)
T PRK10621 11 LLGVLFFVAMLAGFIDSIAG-GGGLLTIPALLA-AGMSPAQALATNKLQACGGSFSASLYFIRRK-------VVNLADQK 81 (266)
T ss_pred HHHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCHHHHH
Confidence 45667778999999999999 999999999974 799999999999871 233333444 59999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccCCC
Q 012031 150 LFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGVETWKKETITKREAAKQLELIVLGNGYQTEECKCDP 229 (472)
Q Consensus 150 ~~~~~~llG~~iGa~l~~~lp~~~l~~ll~ilLl~~~~~~~~k~~~~~kke~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 229 (472)
.+.+++++|+.+|+++..++|++.++.++++++++.+.+++.+. +++ +++
T Consensus 82 ~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~~----~~~---~~~----------------------- 131 (266)
T PRK10621 82 LNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLMP----KLG---EED----------------------- 131 (266)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC----ccc---ccc-----------------------
Confidence 99999999999999999999999999999999998888775441 000 000
Q ss_pred CCCCCCCCCccccCccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHhhhhhhhhHHHHHHHHHH
Q 012031 230 EYLSNDTTPEETREPKKSKVSIIENIYWKEFGLLVAVWAIILALQIAKNYTTTCSVLYWVLNLLQIPVAGGVSAYEAVAL 309 (472)
Q Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~~l~~~i~~~~~~~cs~~yWi~~~l~~pv~~~~~~~~~~~l 309 (472)
+ .++.. +
T Consensus 132 --~-------------~~~~~---~------------------------------------------------------- 138 (266)
T PRK10621 132 --R-------------QRRLY---G------------------------------------------------------- 138 (266)
T ss_pred --c-------------ccccc---c-------------------------------------------------------
Confidence 0 00000 0
Q ss_pred HhhhhhhccCCCCCcccchhhHHHHHHHHHHHHHHHhhhcccchhhHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 012031 310 YKGRRKIASKGDEGTKWRASQLVFYCACGITAGMVGGLLGLGGGFILGPLF-LELGIPPQVSSATALFAITFSSSMSVVE 388 (472)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~G~lsGl~GiGGG~i~vP~l-l~~gl~~~~A~ATs~~~~~~~s~~s~~~ 388 (472)
.......|+++|+++|++|+|||.+++|.+ ..++.|++++++|+.+..++++..+...
T Consensus 139 ---------------------~~~~~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~ 197 (266)
T PRK10621 139 ---------------------LPFALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLL 197 (266)
T ss_pred ---------------------hHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 001234688999999999999999999877 5789999999999999999999999999
Q ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012031 389 YYLLKRFPVPYALYFFALSIIAAFVGQHVLKKLIKILGRASIIIFTL 435 (472)
Q Consensus 389 ~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~~i~~~~~r~~lii~il 435 (472)
|...|.+||..++.+.+++++|+++|+++.+|++++.+|+.+..+++
T Consensus 198 ~~~~G~v~~~~~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~ 244 (266)
T PRK10621 198 FILGGKVIWATGFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSA 244 (266)
T ss_pred HHhCCeehHHHHHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999998776643
No 2
>COG0730 Predicted permeases [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=220.48 Aligned_cols=231 Identities=25% Similarity=0.402 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHhCCChhhHhHHHHH-------HHHHHHHHhhCCCCCCCccchHHHH
Q 012031 77 RIVVGTIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKF-------SAVVYNLRQRHPTLDIPVIDYDLAL 149 (472)
Q Consensus 77 ~~l~~~~iG~l~g~i~~~~GiGGG~i~vP~L~~~~g~~~~~Av~ts~~-------s~~~~~~~~~~~~~~~~~Id~~l~~ 149 (472)
..++.+++|+++|++++++|+|||.+.+|.|.. +++||++|.+++++ ++.+.|+|++ .+||+.+.
T Consensus 6 ~~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~-~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~-------~v~~~~~~ 77 (258)
T COG0730 6 TLLLLFLVGLLAGFISGLAGGGGGLLTVPALLL-LGLPPAAALGTSLLAVLFTSLSSALAYLKRG-------NVDWKLAL 77 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CccHHHHH
Confidence 456788899999999999999999999999997 56999999999998 2233445555 49999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccCCC
Q 012031 150 LFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGVETWKKETITKREAAKQLELIVLGNGYQTEECKCDP 229 (472)
Q Consensus 150 ~~~~~~llG~~iGa~l~~~lp~~~l~~ll~ilLl~~~~~~~~k~~~~~kke~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 229 (472)
.+.+++++|+.+|+++..++|++.++..+++++++.+.+++++... + ++| + .
T Consensus 78 ~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~----~---~~~-----------~----------~ 129 (258)
T COG0730 78 ILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRL----A---KAE-----------D----------R 129 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccc----c---ccc-----------c----------c
Confidence 9999999999999999999999999999999999999998876211 0 000 0 0
Q ss_pred CCCCCCCCCccccCccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHhhhhhhhhHHHHHHHHHH
Q 012031 230 EYLSNDTTPEETREPKKSKVSIIENIYWKEFGLLVAVWAIILALQIAKNYTTTCSVLYWVLNLLQIPVAGGVSAYEAVAL 309 (472)
Q Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~~l~~~i~~~~~~~cs~~yWi~~~l~~pv~~~~~~~~~~~l 309 (472)
+++. .+|.
T Consensus 130 ----------------~~~~-----~~~~--------------------------------------------------- 137 (258)
T COG0730 130 ----------------AARL-----RPLL--------------------------------------------------- 137 (258)
T ss_pred ----------------cccc-----Ccch---------------------------------------------------
Confidence 0000 0000
Q ss_pred HhhhhhhccCCCCCcccchhhHHHHHHHHHHHHHHHhhhcccchhhHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 012031 310 YKGRRKIASKGDEGTKWRASQLVFYCACGITAGMVGGLLGLGGGFILGPLF-LELGIPPQVSSATALFAITFSSSMSVVE 388 (472)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~G~lsGl~GiGGG~i~vP~l-l~~gl~~~~A~ATs~~~~~~~s~~s~~~ 388 (472)
.......|+.+|+++|++|+|||+..+|.+ ...+.|.+.+++|+.+.+++++..+...
T Consensus 138 ---------------------~~~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~ 196 (258)
T COG0730 138 ---------------------FALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAAL 196 (258)
T ss_pred ---------------------hHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 012346789999999999999999999999 5678999999999999999999999999
Q ss_pred HHH-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 012031 389 YYL-LKRFPVPYALYFFALSIIAAFVGQHVLKKLIKILGRASIIIFTLS 436 (472)
Q Consensus 389 ~~~-~G~i~~~~~l~l~~ga~iGa~iG~~l~~~i~~~~~r~~lii~ila 436 (472)
|.. .|.+||..+..+.+++++|+++|+|+++|++++.+|+.+..+++.
T Consensus 197 ~~~~~g~~~~~~~~~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~ 245 (258)
T COG0730 197 YLFALGAVDWPLALLLAVGSILGAYLGARLARRLSPKVLRRLFALVLLA 245 (258)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999 799999988899999999999999999999999999988765433
No 3
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.93 E-value=4.6e-24 Score=207.31 Aligned_cols=222 Identities=27% Similarity=0.476 Sum_probs=181.9
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHHHhCCChhhHhHHHHH----HH---HHHHHHhhCCCCCCCccchHHHHHHHHH
Q 012031 82 TIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKF----SA---VVYNLRQRHPTLDIPVIDYDLALLFQPL 154 (472)
Q Consensus 82 ~~iG~l~g~i~~~~GiGGG~i~vP~L~~~~g~~~~~Av~ts~~----s~---~~~~~~~~~~~~~~~~Id~~l~~~~~~~ 154 (472)
+++++++|++.+..|.|||.+.+|+|.+ + +|+++|++++.. ++ .+.++|++ .+||+....+.++
T Consensus 2 ~~~~~~ag~v~g~~G~g~g~i~~p~l~~-~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~ 72 (240)
T PF01925_consen 2 LLIGFLAGFVSGITGFGGGLIAVPILIL-F-LPPKQAVATSLFINLFTSLIAALRHRKHG-------NIDWKIVLPLIIG 72 (240)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHH-H-cCHHHHHHHHHHHHHHHHHHHHHHHHHcc-------ccchhhhhhhhhH
Confidence 4688899999999999999999999998 4 899999999998 22 22222222 5999999999999
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccCCCCCCCC
Q 012031 155 LVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGVETWKKETITKREAAKQLELIVLGNGYQTEECKCDPEYLSN 234 (472)
Q Consensus 155 ~llG~~iGa~l~~~lp~~~l~~ll~ilLl~~~~~~~~k~~~~~kke~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (472)
+++|+.+|+++...+|++.++.++++++++.+.+++.+..+ ++.+ + + +.+
T Consensus 73 ~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~~~---~~~~---~-----------~-----------~~~-- 122 (240)
T PF01925_consen 73 ALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKKRR---KTPK---S-----------R-----------SSP-- 122 (240)
T ss_pred hHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcccc---cccc---c-----------c-----------ccc--
Confidence 99999999999999999999999999999999888665110 0000 0 0 000
Q ss_pred CCCCccccCccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHhhhhhhhhHHHHHHHHHHHhhhh
Q 012031 235 DTTPEETREPKKSKVSIIENIYWKEFGLLVAVWAIILALQIAKNYTTTCSVLYWVLNLLQIPVAGGVSAYEAVALYKGRR 314 (472)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~~l~~~i~~~~~~~cs~~yWi~~~l~~pv~~~~~~~~~~~l~~~~~ 314 (472)
.+ +|
T Consensus 123 -----------~~--------~~--------------------------------------------------------- 126 (240)
T PF01925_consen 123 -----------PK--------RW--------------------------------------------------------- 126 (240)
T ss_pred -----------cc--------hh---------------------------------------------------------
Confidence 00 00
Q ss_pred hhccCCCCCcccchhhHHHHHHHHHH-HHHHHhhhcccchhhHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Q 012031 315 KIASKGDEGTKWRASQLVFYCACGIT-AGMVGGLLGLGGGFILGPLFL-ELGIPPQVSSATALFAITFSSSMSVVEYYLL 392 (472)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~G~~-~G~lsGl~GiGGG~i~vP~ll-~~gl~~~~A~ATs~~~~~~~s~~s~~~~~~~ 392 (472)
.....|.+ .|+++|++|+|||.+.+|.+. ..|.|++++.||+.++.++++..+...|...
T Consensus 127 ------------------~~~~~g~~~~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~ 188 (240)
T PF01925_consen 127 ------------------LLFLLGGLFIGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLIL 188 (240)
T ss_pred ------------------hhhhhhHHHhhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12234445 999999999999999999996 5799999999999999999999999999999
Q ss_pred CCcCHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 012031 393 KRFPVPYALY---FFALSIIAAFVGQHVLKKLIKILGRASIIIFTLS 436 (472)
Q Consensus 393 G~i~~~~~l~---l~~ga~iGa~iG~~l~~~i~~~~~r~~lii~ila 436 (472)
|.+|++.... +.+++++|+++|+++.+|++++.+|+.+.++++.
T Consensus 189 g~~~~~~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~ 235 (240)
T PF01925_consen 189 GDVDWPMLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLL 235 (240)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999987766 9999999999999999999999999988776543
No 4
>PRK10621 hypothetical protein; Provisional
Probab=99.31 E-value=4.5e-11 Score=118.75 Aligned_cols=104 Identities=18% Similarity=0.268 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Q 012031 331 LVFYCACGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIA 410 (472)
Q Consensus 331 ~~~~~~~G~~~G~lsGl~GiGGG~i~vP~ll~~gl~~~~A~ATs~~~~~~~s~~s~~~~~~~G~i~~~~~l~l~~ga~iG 410 (472)
.....+.|+++|+++|+.| |||.+.+|.+..+|+||++|++|+.+.++.+++.+...|...+++||+....+.+++++|
T Consensus 12 ~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~l~G 90 (266)
T PRK10621 12 LGVLFFVAMLAGFIDSIAG-GGGLLTIPALLAAGMSPAQALATNKLQACGGSFSASLYFIRRKVVNLADQKLNIAMTFVG 90 (266)
T ss_pred HHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4557778999999999999 999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 012031 411 AFVGQHVLKKLIKILGRASIIIFTL 435 (472)
Q Consensus 411 a~iG~~l~~~i~~~~~r~~lii~il 435 (472)
+.+|+.+..+++++.+|..+.++++
T Consensus 91 a~~G~~l~~~l~~~~l~~~~~~~ll 115 (266)
T PRK10621 91 SMSGALLVQYVQADILRQILPILVI 115 (266)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999977765543
No 5
>COG0730 Predicted permeases [General function prediction only]
Probab=99.24 E-value=1.6e-10 Score=113.99 Aligned_cols=104 Identities=30% Similarity=0.460 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Q 012031 331 LVFYCACGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIA 410 (472)
Q Consensus 331 ~~~~~~~G~~~G~lsGl~GiGGG~i~vP~ll~~gl~~~~A~ATs~~~~~~~s~~s~~~~~~~G~i~~~~~l~l~~ga~iG 410 (472)
.......|+++|+++|++|+|||.+.+|.++.+++||+.|.+|+.....+++..+...|...|++||+.+..+.+++++|
T Consensus 7 ~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~v~~~~~~~l~~~~~~G 86 (258)
T COG0730 7 LLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLGLPPAAALGTSLLAVLFTSLSSALAYLKRGNVDWKLALILLLGALIG 86 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 012031 411 AFVGQHVLKKLIKILGRASIIIFT 434 (472)
Q Consensus 411 a~iG~~l~~~i~~~~~r~~lii~i 434 (472)
+.+|+.+..+++++.++..+..++
T Consensus 87 ~~lG~~l~~~~~~~~l~~~~~~~l 110 (258)
T COG0730 87 AFLGALLALLLPAELLKLLFGLLL 110 (258)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999998755554
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=98.95 E-value=8e-09 Score=100.29 Aligned_cols=100 Identities=26% Similarity=0.423 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHH
Q 012031 335 CACGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVG 414 (472)
Q Consensus 335 ~~~G~~~G~lsGl~GiGGG~i~vP~ll~~gl~~~~A~ATs~~~~~~~s~~s~~~~~~~G~i~~~~~l~l~~ga~iGa~iG 414 (472)
.+.++++|++.|..|.|+|.+.+|.+..+ +||++|++|+.....+++..++..|..++++||+....+.+++++|+.+|
T Consensus 2 ~~~~~~ag~v~g~~G~g~g~i~~p~l~~~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~iG 80 (240)
T PF01925_consen 2 LLIGFLAGFVSGITGFGGGLIAVPILILF-LPPKQAVATSLFINLFTSLIAALRHRKHGNIDWKIVLPLIIGALIGVVIG 80 (240)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhhhhhHhHHHHHHH
Confidence 35788999999999999999999999666 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 012031 415 QHVLKKLIKILGRASIIIFTL 435 (472)
Q Consensus 415 ~~l~~~i~~~~~r~~lii~il 435 (472)
..+...++++..+..+.++++
T Consensus 81 ~~l~~~l~~~~l~~~~~~~ll 101 (240)
T PF01925_consen 81 AWLLSLLPDDILKLIFGLFLL 101 (240)
T ss_pred HhhhcchhHHHHHHHHHHHHH
Confidence 999999999987776666543
No 7
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=80.35 E-value=66 Score=32.07 Aligned_cols=81 Identities=23% Similarity=0.265 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHH
Q 012031 332 VFYCACGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAA 411 (472)
Q Consensus 332 ~~~~~~G~~~G~lsGl~GiGGG~i~vP~ll~~gl~~~~A~ATs~~~~~~~s~~s~~~~~~~G~i~~~~~l~l~~ga~iGa 411 (472)
+..+++|++++.--=+=|+.|..+ |+.+|.=.....|-+.+.. -|+....+++.|+++|-
T Consensus 143 ~~lf~~G~ia~~AMIlPGiSGS~i----LlilG~Y~~vl~ai~~~~~----------------~~~~~L~~f~~G~~~Gi 202 (257)
T PF04018_consen 143 LYLFLAGAIAACAMILPGISGSFI----LLILGLYEPVLSAISDLID----------------SNIPVLIPFGIGVVIGI 202 (257)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHH----HHHHHhHHHHHHHHHHhhh----------------hhhHHHHHHHHHHHHHH
Confidence 345556666655555557766633 3445543333333333322 46778889999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 012031 412 FVGQHVLKKLIKILGRASIII 432 (472)
Q Consensus 412 ~iG~~l~~~i~~~~~r~~lii 432 (472)
.+-+|+.+++-+|+.+..+..
T Consensus 203 ~~~skll~~ll~~~~~~t~~~ 223 (257)
T PF04018_consen 203 LLFSKLLSYLLKRYRSQTYAF 223 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887765543
No 8
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=77.23 E-value=55 Score=31.35 Aligned_cols=52 Identities=8% Similarity=0.211 Sum_probs=40.3
Q ss_pred cchHHHHHH----HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhhhhh
Q 012031 143 IDYDLALLF----QPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGV 194 (472)
Q Consensus 143 Id~~l~~~~----~~~~llG~~iGa~l~~~lp~~~l~~ll~ilLl~~~~~~~~k~~ 194 (472)
++++.+..+ ..+..+|-.+|..+.+++|+++-.++-.++|++.+.++++++.
T Consensus 28 ~~~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 28 IPFLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 355554444 4567777888888888888888888889999999999998764
No 9
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=75.79 E-value=89 Score=31.12 Aligned_cols=85 Identities=11% Similarity=-0.006 Sum_probs=52.1
Q ss_pred hhcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcC------CcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012031 347 LLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLK------RFPVPYALYFFALSIIAAFVGQHVLKK 420 (472)
Q Consensus 347 l~GiGGG~i~vP~ll~~gl~~~~A~ATs~~~~~~~s~~s~~~~~~~G------~i~~~~~l~l~~ga~iGa~iG~~l~~~ 420 (472)
+=|+.=.-..+...+..|++.++|.--|-++..+....+..-..... ..++.....-.+.+++.+++.-+...|
T Consensus 159 ~PGiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll~ 238 (259)
T PF02673_consen 159 IPGISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLLR 238 (259)
T ss_pred CCCcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444556666889999999999999988888877776444321 123333444455556666666665555
Q ss_pred hHHHHHHHHHH
Q 012031 421 LIKILGRASII 431 (472)
Q Consensus 421 i~~~~~r~~li 431 (472)
+.++...+.+.
T Consensus 239 ~~~~~~~~~F~ 249 (259)
T PF02673_consen 239 FLKRRKLRPFA 249 (259)
T ss_pred HHhhCCceeeh
Confidence 55554333333
No 10
>PRK11469 hypothetical protein; Provisional
Probab=70.16 E-value=99 Score=29.20 Aligned_cols=42 Identities=19% Similarity=0.442 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhhhhh
Q 012031 152 QPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGV 194 (472)
Q Consensus 152 ~~~~llG~~iGa~l~~~lp~~~l~~ll~ilLl~~~~~~~~k~~ 194 (472)
..+.++|-.+|..+..++|+.. .++-..+|++.+.+++.+++
T Consensus 48 ~~m~~~g~~~G~~l~~~i~~~~-~~i~~~lL~~lG~~mi~e~~ 89 (188)
T PRK11469 48 TLTPLIGWGMGMLASRFVLEWN-HWIAFVLLIFLGGRMIIEGF 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3556667778888888877754 77778888999999988753
No 11
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=64.59 E-value=2.2e+02 Score=31.10 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=18.3
Q ss_pred HHHHHhhCCCCCCCccchHHHHHHHHHHHHHHHHH
Q 012031 128 VYNLRQRHPTLDIPVIDYDLALLFQPLLVLGISIG 162 (472)
Q Consensus 128 ~~~~~~~~~~~~~~~Id~~l~~~~~~~~llG~~iG 162 (472)
..++..-.|..-|+...--.......+.++|..+|
T Consensus 138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~ 172 (485)
T KOG0569|consen 138 PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG 172 (485)
T ss_pred HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 33455555655556555555444455555554444
No 12
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=59.36 E-value=41 Score=36.94 Aligned_cols=48 Identities=29% Similarity=0.319 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhh-hHHHHHHHHhCCChhhHhHHHHH
Q 012031 76 WRIVVGTIIGFFGTACGSVGGVGGGG-IFVPMLNLIVGFDAKSSAAVSKF 124 (472)
Q Consensus 76 ~~~l~~~~iG~l~g~i~~~~GiGGG~-i~vP~L~~~~g~~~~~Av~ts~~ 124 (472)
.+.-+.++.=.+++++=+..|.|-.. +..|+|.. +|+||-.|+..++.
T Consensus 99 ~r~q~lli~~~Fg~flEgaaGFGtpvAI~aplLv~-LGf~P~~Aa~l~Li 147 (522)
T PF02652_consen 99 RRVQVLLIAFGFGAFLEGAAGFGTPVAIAAPLLVA-LGFPPLQAAALCLI 147 (522)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH-cCCChHHHHHHHHH
Confidence 34444444444577888899999886 55667765 89999999998886
No 13
>PRK10263 DNA translocase FtsK; Provisional
Probab=48.97 E-value=2e+02 Score=35.30 Aligned_cols=18 Identities=11% Similarity=-0.112 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhhccc
Q 012031 334 YCACGITAGMVGGLLGLG 351 (472)
Q Consensus 334 ~~~~G~~~G~lsGl~GiG 351 (472)
..+...++.++-+++|++
T Consensus 65 GiVGA~LAD~L~~LFGl~ 82 (1355)
T PRK10263 65 GMPGAWLADTLFFIFGVM 82 (1355)
T ss_pred chHHHHHHHHHHHHHhHH
Confidence 445556677777888853
No 14
>COG2119 Predicted membrane protein [Function unknown]
Probab=47.91 E-value=57 Score=30.91 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhhh
Q 012031 142 VIDYDLALLFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLK 192 (472)
Q Consensus 142 ~Id~~l~~~~~~~~llG~~iGa~l~~~lp~~~l~~ll~ilLl~~~~~~~~k 192 (472)
.+-....+-+.+.++++.+.|-+++..+|.+.++.+-++++++.+.+.+..
T Consensus 134 ~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~ 184 (190)
T COG2119 134 AVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQ 184 (190)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777889999999999999999999999999999999888776654
No 15
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=47.56 E-value=1e+02 Score=22.96 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 012031 367 PQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLK 419 (472)
Q Consensus 367 ~~~A~ATs~~~~~~~s~~s~~~~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~ 419 (472)
+.+..|.+.+...................-.+.++.+...+++|+..-+|..+
T Consensus 2 ~DRvva~d~~~~~~v~~l~l~a~~~~~~~~lDialv~all~Fvgtva~arfl~ 54 (55)
T PF04066_consen 2 ADRVVALDLISTLIVALLALLAIITGRPFYLDIALVYALLGFVGTVAFARFLE 54 (55)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677888888888888888888887777778888888889998888777654
No 16
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=43.82 E-value=52 Score=26.50 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=34.9
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHH
Q 012031 143 IDYDLALLFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVL 185 (472)
Q Consensus 143 Id~~l~~~~~~~~llG~~iGa~l~~~lp~~~l~~ll~ilLl~~ 185 (472)
+-.....-+.....++..+|.++.+++|++.++.+-+++++..
T Consensus 35 V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~f 77 (78)
T PF01169_consen 35 VFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLF 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 3444555677888999999999999999999999988877653
No 17
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.05 E-value=82 Score=26.86 Aligned_cols=16 Identities=44% Similarity=0.858 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 012031 254 NIYWKEFGLLVAVWAIILA 272 (472)
Q Consensus 254 ~~~w~~~~~~~~v~~~~l~ 272 (472)
.+|| .+|++.|++|.+
T Consensus 84 ~LPW---~LL~lSW~gF~~ 99 (103)
T PF11169_consen 84 WLPW---GLLVLSWIGFIA 99 (103)
T ss_pred chhH---HHHHHHHHHHHH
Confidence 3556 488899999864
No 18
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=40.58 E-value=4e+02 Score=26.84 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccHHHHH
Q 012031 145 YDLALLFQPLLVLGISIGVAFNVIFADWMIT 175 (472)
Q Consensus 145 ~~l~~~~~~~~llG~~iGa~l~~~lp~~~l~ 175 (472)
|++.+...++.++-+.+|..+...+...+..
T Consensus 84 ~~l~l~ilvatiPa~v~Gl~~~d~i~~~l~~ 114 (270)
T COG1968 84 FRLWLKILVATIPAVVLGLLFKDFIKSHLFN 114 (270)
T ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHHccC
Confidence 7788888899999999998887766554433
No 19
>PRK10420 L-lactate permease; Provisional
Probab=39.78 E-value=51 Score=36.51 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHhCCChhhHhHHHHH
Q 012031 77 RIVVGTIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKF 124 (472)
Q Consensus 77 ~~l~~~~iG~l~g~i~~~~GiGGG~i~vP~L~~~~g~~~~~Av~ts~~ 124 (472)
|.-+.++.=.+++++=+++|.|-.....+-+..-+||||-.|+.+++.
T Consensus 115 Rvq~LlI~~~Fg~FlEg~AGFGtpvAI~aplLv~LGF~Pl~Aa~i~Li 162 (551)
T PRK10420 115 RLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLI 162 (551)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcCCChHHHHHHHHH
Confidence 444444445567888999998887776555544599999999999998
No 20
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=39.55 E-value=65 Score=35.50 Aligned_cols=73 Identities=19% Similarity=0.145 Sum_probs=45.7
Q ss_pred hhhhccccCCCccc-cccCCcchhhHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHhCCChhhHhHHHHH
Q 012031 52 IVIKVSAPKSRSGY-KHVWPDIKFGWRIVVGTIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKF 124 (472)
Q Consensus 52 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~iG~l~g~i~~~~GiGGG~i~vP~L~~~~g~~~~~Av~ts~~ 124 (472)
++.+..+++|.-.. ++.....+-+.|.-+.++.=.+++++=+++|.|-.....+-++.-+||+|-.|+.+++.
T Consensus 80 ~ly~~~~~sGa~~~I~~~l~~is~D~rvq~llI~~~Fg~flEg~aGFGtpvAI~aplLv~LGf~Pl~Aa~i~Li 153 (530)
T TIGR00795 80 FLYKLSVKSGAFEIIRSSILSISPDRRIQVLLIGFCFGAFLEGAAGFGTPVAITAAILVGLGFKPLYAAGLCLI 153 (530)
T ss_pred HHHHHHHHhCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHcCCChHHHHHHHHH
Confidence 55566666665111 11111222234555555555567889999999887766544444589999999999998
No 21
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=35.93 E-value=4.3e+02 Score=25.92 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=25.0
Q ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 012031 392 LKRFPVPYALYFFALSIIAAFVGQHVLKKLI 422 (472)
Q Consensus 392 ~G~i~~~~~l~l~~ga~iGa~iG~~l~~~i~ 422 (472)
.|.++--.++...+-+++|+.+|..+.+.+.
T Consensus 142 iGGip~ltav~Vi~tGi~Gavlg~~llk~~~ 172 (230)
T COG1346 142 IGGIPALTAVFVILTGILGAVLGPLLLKLLR 172 (230)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666667777888888999999999888874
No 22
>PRK09695 glycolate transporter; Provisional
Probab=35.51 E-value=62 Score=35.95 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHhCCChhhHhHHHHH
Q 012031 77 RIVVGTIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKF 124 (472)
Q Consensus 77 ~~l~~~~iG~l~g~i~~~~GiGGG~i~vP~L~~~~g~~~~~Av~ts~~ 124 (472)
|.-+.++.=.+++++=+++|.|-.....+-+..-+||||-.|+..++.
T Consensus 115 riQ~LlI~~~Fg~FlEg~aGFGtPvAI~aplLv~LGF~Pl~Aa~i~Li 162 (560)
T PRK09695 115 RLQVLLIGFSFGALLEGAAGFGAPVAITGALLVGLGFKPLYAAGLCLI 162 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHcCCChHHHHHHHHH
Confidence 444555555567889999999988777655555699999999999998
No 23
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=33.72 E-value=4.4e+02 Score=27.59 Aligned_cols=97 Identities=19% Similarity=0.317 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Q 012031 329 SQLVFYCACGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSI 408 (472)
Q Consensus 329 ~~~~~~~~~G~~~G~lsGl~GiGGG~i~vP~ll~~gl~~~~A~ATs~~~~~~~s~~s~~~~~~~G~i~~~~~l~l~~ga~ 408 (472)
.++.....++++.|.+.-+.++..+.++.+.+. +..+.-.....+.++-.+....-.+
T Consensus 9 ~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~----------------------a~~v~~~~~~~l~~P~~l~~~~q~i 66 (352)
T COG3180 9 LQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLL----------------------AGIVAGLRGLTLPLPRGLFKAGQVI 66 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----------------------HHHHHHhccccccCChHHHHHHHHH
Confidence 345566777778888888888777766663221 1111123344566666666667778
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012031 409 IAAFVGQHVLKKLIKILGRASIIIFTLSFIIFVSALSLG 447 (472)
Q Consensus 409 iGa~iG~~l~~~i~~~~~r~~lii~ila~~i~~sai~l~ 447 (472)
+|..+|+.+....-+...+....++........+++.++
T Consensus 67 lG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g 105 (352)
T COG3180 67 LGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLG 105 (352)
T ss_pred HHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 888899888888877777766666655555555555554
No 24
>PRK11588 hypothetical protein; Provisional
Probab=32.91 E-value=7e+02 Score=27.45 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=10.9
Q ss_pred hCCChhhHhHHHHHHH
Q 012031 111 VGFDAKSSAAVSKFSA 126 (472)
Q Consensus 111 ~g~~~~~Av~ts~~s~ 126 (472)
+|+|+-.++++..+++
T Consensus 185 lGyD~ivg~ai~~lg~ 200 (506)
T PRK11588 185 LGYDSITTVLVTYVAT 200 (506)
T ss_pred hCCcHHHHHHHHHHHh
Confidence 5777777777776643
No 25
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=32.18 E-value=5.4e+02 Score=25.89 Aligned_cols=48 Identities=8% Similarity=0.072 Sum_probs=33.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccHHHH-HHHHHHHHHHHHHHHh
Q 012031 143 IDYDLALLFQPLLVLGISIGVAFNVIFADWMI-TVLLIVLFLVLSTRAF 190 (472)
Q Consensus 143 Id~~l~~~~~~~~llG~~iGa~l~~~lp~~~l-~~ll~ilLl~~~~~~~ 190 (472)
-|+++.+.+.++.++.+.+|..+...+++..- ....+..+++.+.-++
T Consensus 83 ~~~~l~~~iivatiP~~i~Gl~l~~~i~~~~~~~~~i~~~Lii~GilL~ 131 (276)
T PRK12554 83 SDARFGWYIIIGTIPAGVLGLLFKDRIETVLRDLRIVAIALIVTGVLLW 131 (276)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 36788888899999999999888776654311 2355666666665544
No 26
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=30.86 E-value=5.6e+02 Score=25.65 Aligned_cols=44 Identities=9% Similarity=-0.076 Sum_probs=31.8
Q ss_pred hhcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 012031 347 LLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYY 390 (472)
Q Consensus 347 l~GiGGG~i~vP~ll~~gl~~~~A~ATs~~~~~~~s~~s~~~~~ 390 (472)
+=|+.=.-..+...+..|++.+.|.=-|-++..+.-..+.+.-.
T Consensus 163 iPGiSRSG~TI~~~l~~G~~r~~Aa~fSFLlsiPai~gA~~l~~ 206 (268)
T PRK00281 163 IPGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMLGASLLDL 206 (268)
T ss_pred CCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555444555666789999999999999988888776665433
No 27
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=30.65 E-value=2.2e+02 Score=20.90 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccH-HHHHHHHHHHHHHHHHHHhhh
Q 012031 146 DLALLFQPLLVLGISIGVAFNVIFAD-WMITVLLIVLFLVLSTRAFLK 192 (472)
Q Consensus 146 ~l~~~~~~~~llG~~iGa~l~~~lp~-~~l~~ll~ilLl~~~~~~~~k 192 (472)
.++.-+..+.++|..+|-++-+.+.. ....++..++=+..+.+.+.|
T Consensus 5 ~lg~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~~~~ 52 (55)
T PF09527_consen 5 QLGFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYNVYR 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888999888888865 444444444444555554433
No 28
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=29.62 E-value=2.3e+02 Score=26.59 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=9.3
Q ss_pred hcCCChHHHHHHHHH
Q 012031 362 ELGIPPQVSSATALF 376 (472)
Q Consensus 362 ~~gl~~~~A~ATs~~ 376 (472)
.+|+||-...+-+++
T Consensus 71 I~GlDP~~~~g~~t~ 85 (173)
T PF08566_consen 71 IMGLDPFMVYGLATL 85 (173)
T ss_pred ccCcCHHHHHHHHHH
Confidence 568888766554443
No 29
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=29.55 E-value=1.9e+02 Score=23.21 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 012031 400 ALYFFALSIIAAFVGQHVLKKLIKILGRASIIIF 433 (472)
Q Consensus 400 ~l~l~~ga~iGa~iG~~l~~~i~~~~~r~~lii~ 433 (472)
.+.+.....++..+|..+.+++|+++.+..-.+.
T Consensus 40 ~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~l 73 (78)
T PF01169_consen 40 TLALALATGLAVLLGSWLASRIPERYIKWVAGAL 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 3456777889999999999999999988754443
No 30
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=27.39 E-value=1.9e+02 Score=29.07 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 012031 145 YDLALLFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGVETWKK 199 (472)
Q Consensus 145 ~~l~~~~~~~~llG~~iGa~l~~~lp~~~l~~ll~ilLl~~~~~~~~k~~~~~kk 199 (472)
-.....+..+.++++.+|=.....+|.+.-.++-++++++.++|++..++++-+.
T Consensus 103 ~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~ 157 (294)
T KOG2881|consen 103 SGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSPS 157 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 3344456788899999997777888999888999999999999999988665443
No 31
>COG1971 Predicted membrane protein [Function unknown]
Probab=26.93 E-value=5.6e+02 Score=24.41 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=30.6
Q ss_pred chHHHHHHH----HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhhhhh
Q 012031 144 DYDLALLFQ----PLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGV 194 (472)
Q Consensus 144 d~~l~~~~~----~~~llG~~iGa~l~~~lp~~~l~~ll~ilLl~~~~~~~~k~~ 194 (472)
....+..+. ++.++|..+|-++++++ ..+=.++-.+++.+.+.+|+..+.
T Consensus 36 ~L~ia~~fG~f~~i~pliG~~~g~~~s~~i-~~~~~wigf~lL~~lG~~mI~e~f 89 (190)
T COG1971 36 ALVIALIFGVFQAIMPLIGWFIGKFLSTFI-AEWAHWIGFVLLIILGLKMIIEGF 89 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455444 44455555555555433 444566777788889999987764
No 32
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=26.11 E-value=3.8e+02 Score=22.43 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012031 366 PPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKK 420 (472)
Q Consensus 366 ~~~~A~ATs~~~~~~~s~~s~~~~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~~ 420 (472)
.+.+..|.+.+.....++............-.+.++.++..+++|+..-+|...+
T Consensus 30 ~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fv~tva~Aryl~~ 84 (94)
T PRK12600 30 LADRVVALDAIGINLIAIIALFSILLDTKAYLEVILLIGILAFIGTAAFSKFIEK 84 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999988888888888888777777788888998899888877766543
No 33
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=25.96 E-value=3.5e+02 Score=29.30 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=10.4
Q ss_pred hcCCChHHHHHHHHHHHHHH
Q 012031 362 ELGIPPQVSSATALFAITFS 381 (472)
Q Consensus 362 ~~gl~~~~A~ATs~~~~~~~ 381 (472)
.+|++..+.........+..
T Consensus 311 ~lg~s~~~l~~~~l~~~i~a 330 (477)
T PF11700_consen 311 VLGMSTTQLIVFGLVVQIVA 330 (477)
T ss_pred hcCcCHHHHHHHHHHHHHHH
Confidence 57777666444444433333
No 34
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=24.26 E-value=2.3e+02 Score=24.10 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccH
Q 012031 147 LALLFQPLLVLGISIGVAFNVIFAD 171 (472)
Q Consensus 147 l~~~~~~~~llG~~iGa~l~~~lp~ 171 (472)
+.+-+.++.++|.++|-++-..++.
T Consensus 48 IG~~~v~pil~G~~lG~WLD~~~~t 72 (100)
T TIGR02230 48 IGWSVAIPTLLGVAVGIWLDRHYPS 72 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3445677888999999999998875
No 35
>COG3619 Predicted membrane protein [Function unknown]
Probab=24.01 E-value=6e+02 Score=24.83 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=28.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHhhhhhcccHHHHHH
Q 012031 141 PVIDYDLALLFQPLLVLGISIGVAFNVIFADWMITV 176 (472)
Q Consensus 141 ~~Id~~l~~~~~~~~llG~~iGa~l~~~lp~~~l~~ 176 (472)
...||..-..+..+-+.|+.+|+.+...+-++.+-.
T Consensus 167 ~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~ 202 (226)
T COG3619 167 KLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWV 202 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 367888888888899999999999988776654443
No 36
>PRK06161 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=23.28 E-value=4.3e+02 Score=21.83 Aligned_cols=60 Identities=17% Similarity=0.027 Sum_probs=45.6
Q ss_pred HhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012031 361 LELG-IPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKK 420 (472)
Q Consensus 361 l~~g-l~~~~A~ATs~~~~~~~s~~s~~~~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~~ 420 (472)
...| -.+.+++|...+.....+.............-.+.++.+...+++|+..=+|...|
T Consensus 24 ~v~GPt~~DRvvA~D~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fl~tva~AR~~~~ 84 (89)
T PRK06161 24 LLRGPRAQDRILALDTLYINAILLLLVFGIRLGSTIYFEAALLIALLGFVSTVALAKFLLR 84 (89)
T ss_pred HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444 46789999999988888888888887776667788888888888887776665443
No 37
>COG2119 Predicted membrane protein [Function unknown]
Probab=23.20 E-value=6.6e+02 Score=23.93 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=41.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhhh
Q 012031 143 IDYDLALLFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLK 192 (472)
Q Consensus 143 Id~~l~~~~~~~~llG~~iGa~l~~~lp~~~l~~ll~ilLl~~~~~~~~k 192 (472)
|--....-...+-.+.+.+|......+|++.+.+..+...+..+++++.+
T Consensus 36 v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~e 85 (190)
T COG2119 36 VFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIE 85 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcc
Confidence 33445555677888999999999999999999999999999999887655
No 38
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=22.06 E-value=6.9e+02 Score=23.74 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCccchHHHHHHHHHHHHHHHHHhhhhhccc
Q 012031 120 AVSKFSAVVYNLRQRHPTLDIPVIDYDLALLFQPLLVLGISIGVAFNVIFA 170 (472)
Q Consensus 120 ~ts~~s~~~~~~~~~~~~~~~~~Id~~l~~~~~~~~llG~~iGa~l~~~lp 170 (472)
+++..++++. +++|. .--++...+-..+.++|..+|+.+...++
T Consensus 122 al~~~~~iyf-l~~K~------~~~~rA~~~~~~~L~~G~~lGs~l~~~l~ 165 (194)
T PF11833_consen 122 ALGLGACIYF-LNRKE------RKLGRAFLWTLGGLVVGLILGSLLASWLP 165 (194)
T ss_pred HHHHHHHHHH-HHHhc------chHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455554 44442 24556666666777788888887776663
No 39
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=21.93 E-value=7.7e+02 Score=24.23 Aligned_cols=80 Identities=15% Similarity=0.019 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhhcccchhhHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH
Q 012031 334 YCACGITAGMVGGLLGLGGGFILGPLF-LELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAF 412 (472)
Q Consensus 334 ~~~~G~~~G~lsGl~GiGGG~i~vP~l-l~~gl~~~~A~ATs~~~~~~~s~~s~~~~~~~G~i~~~~~l~l~~ga~iGa~ 412 (472)
-...|.++|...+++. ...+ ..+|.|++...+...= .+-+-++-.+..- .|..+--.+....+.+++|+.
T Consensus 95 ~Il~~~~vG~~~~i~s-------~~~la~~lgl~~~~~~Sl~pK-SVTtPIAm~is~~-iGG~psLtA~~ViitGi~Gai 165 (232)
T PRK04288 95 QILGGIVVGSVCSVLI-------IYLVAKLIQLDNAVMASMLPQ-AATTAIALPVSAG-IGGIKEITSFAVIFNAVIIYA 165 (232)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHCcCHHHHHHHhhH-hhhHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHH
Confidence 3445555555544433 2344 5788887654332111 1111111112222 344555566677778889999
Q ss_pred HHHHHHHHhH
Q 012031 413 VGQHVLKKLI 422 (472)
Q Consensus 413 iG~~l~~~i~ 422 (472)
+|..+.+.+.
T Consensus 166 ~g~~llk~~~ 175 (232)
T PRK04288 166 LGAKFLKLFR 175 (232)
T ss_pred HHHHHHHHcC
Confidence 9998877653
No 40
>PRK12599 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=21.90 E-value=4.7e+02 Score=21.72 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=47.3
Q ss_pred hcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012031 362 ELGI-PPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKK 420 (472)
Q Consensus 362 ~~gl-~~~~A~ATs~~~~~~~s~~s~~~~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~~ 420 (472)
..|= .+.+..|.+.+...................-.+.++.+..-+++|+..=+|...|
T Consensus 27 i~GPt~~DRvvAld~~~~~~v~~i~lla~~~~~~~~~dvalvlall~Fvgtva~Aryl~~ 86 (91)
T PRK12599 27 ILGPTLPDRVVALDTLNTITVGIIAVLAAATGRPLYLDIAIVYALLSFLGTVAIAKYLVG 86 (91)
T ss_pred hcCccHhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443 5789999999999999988888888877777788899999999988887776544
No 41
>KOG1629 consensus Bax-mediated apoptosis inhibitor TEGT/BI-1 [Defense mechanisms]
Probab=21.63 E-value=6e+02 Score=24.52 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhccC
Q 012031 449 VGLAKMIKRIEHKE 462 (472)
Q Consensus 449 ~g~~~~i~~~~~~~ 462 (472)
+--+++|||.++||
T Consensus 182 vdTQ~IiEKah~Gd 195 (235)
T KOG1629|consen 182 VDTQEIIEKAHHGD 195 (235)
T ss_pred eeHHHHHHHHhcCC
Confidence 34689999998875
No 42
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.47 E-value=74 Score=30.63 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=40.4
Q ss_pred CCCcchhhhccc-------cCCCccccccCCcchhhHHH-HHH--------HH----HHHHHHHHhhccccchhhhHHHH
Q 012031 47 HVEPNIVIKVSA-------PKSRSGYKHVWPDIKFGWRI-VVG--------TI----IGFFGTACGSVGGVGGGGIFVPM 106 (472)
Q Consensus 47 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-l~~--------~~----iG~l~g~i~~~~GiGGG~i~vP~ 106 (472)
..+..||..... ......-...||....+|+- .++ .. -||++|.+.+.+||-||+++-=.
T Consensus 79 ~~sgsFLs~~f~~gt~~e~app~~a~~p~~~aap~S~rs~~~g~t~~p~paa~~~r~ssFLG~AlqTAAGVAGGMlL~n~ 158 (233)
T COG3416 79 AGSGSFLSNAFKWGTPQEPAPPANAPPPKEPAAPPSWRSSPAGPTTQPSPAAANTRSSSFLGGALQTAAGVAGGMLLANG 158 (233)
T ss_pred CCCcchhhhhcccCCCCCCCCCcCCCCCCCCCCCCCccccccCCCCCCCccccccccchhHHHHHHHHhhhhhhHHHHHH
Confidence 455667766642 11123345566666666642 111 11 27999999999999999988777
Q ss_pred HHHH
Q 012031 107 LNLI 110 (472)
Q Consensus 107 L~~~ 110 (472)
|.-+
T Consensus 159 L~~m 162 (233)
T COG3416 159 LEGM 162 (233)
T ss_pred HHHH
Confidence 7654
No 43
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=21.31 E-value=6.8e+02 Score=23.39 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 012031 396 PVPYALYFFALSIIAAFVGQHVLKKLIKILGR 427 (472)
Q Consensus 396 ~~~~~l~l~~ga~iGa~iG~~l~~~i~~~~~r 427 (472)
+.+..+.+.+.+++++.+|+.+.+|+-+|-++
T Consensus 154 ~~~~~~~~~~~~~v~a~lG~~lG~kllkKHF~ 185 (186)
T PF09605_consen 154 TPWMLIIIIIITFVGALLGALLGKKLLKKHFE 185 (186)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44556667777888888888888887777554
No 44
>COG4280 Predicted membrane protein [Function unknown]
Probab=20.45 E-value=4.9e+02 Score=25.20 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=27.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012031 166 NVIFADWMITVLLIVLFLVLSTRAFLKGVETWK 198 (472)
Q Consensus 166 ~~~lp~~~l~~ll~ilLl~~~~~~~~k~~~~~k 198 (472)
...+|-..+++..+++|+..+.+-.+|+.+.++
T Consensus 58 L~lvPln~lqiv~gvLLllFG~rw~Rsavrr~a 90 (236)
T COG4280 58 LYLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFA 90 (236)
T ss_pred eeeeechHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345699999999999999999998888766554
No 45
>PRK12612 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=20.09 E-value=4.9e+02 Score=21.33 Aligned_cols=55 Identities=7% Similarity=-0.048 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 012031 365 IPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLK 419 (472)
Q Consensus 365 l~~~~A~ATs~~~~~~~s~~s~~~~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~ 419 (472)
-.+.+..|.+.....................-.+.++.++..+++|+..=+|...
T Consensus 29 t~~DRvvalD~l~~~~v~~l~~~~~~~~~~~~~dvalvlall~FvgTva~Ar~l~ 83 (87)
T PRK12612 29 DILTRLVISDMVFYAMALILLCLGLYNGTSIYYDIALAAGLLGFLGTIAYARIIS 83 (87)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999998888888888888777777778888888888888887776644
Done!