Query 012031
Match_columns 472
No_of_seqs 297 out of 1982
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 20:15:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 25.1 2.4E+02 0.0082 27.9 8.7 33 389-421 121-153 (340)
2 3c02_A Aquaglyceroporin; membr 19.2 4.5E+02 0.016 24.5 9.2 35 388-422 76-110 (258)
3 2zz9_A Aquaporin-4; water tran 17.7 3.5E+02 0.012 26.2 8.0 33 389-421 82-114 (301)
4 2b6o_A Aquaporin-0, lens fiber 17.5 5.2E+02 0.018 24.2 9.1 33 389-421 75-107 (263)
5 3iyz_A Aquaporin-4; water tran 16.7 1.2E+02 0.0042 30.0 4.5 25 143-167 127-151 (340)
6 3llq_A Aquaporin Z 2; aquapori 15.2 2.2E+02 0.0075 26.9 5.7 33 389-421 98-130 (256)
7 3gd8_A Aquaporin-4; proton exc 14.5 2.5E+02 0.0087 25.7 5.9 33 389-421 73-105 (223)
8 2o9g_A Aquaporin Z; integral m 14.5 2.5E+02 0.0086 25.9 5.9 34 388-421 72-105 (234)
9 3d9s_A Aquaporin-5, AQP-5; aqu 14.1 2.6E+02 0.0087 26.5 6.0 33 389-421 77-109 (266)
10 2w2e_A AQY1, aquaporin, aquapo 13.9 2.6E+02 0.0088 26.7 5.9 34 388-421 118-151 (279)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=25.10 E-value=2.4e+02 Score=27.88 Aligned_cols=33 Identities=9% Similarity=0.366 Sum_probs=27.2
Q ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012031 389 YYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 421 (472)
Q Consensus 389 ~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~~i 421 (472)
....|+++|.-+...++..++|+++|+.++.-+
T Consensus 121 l~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~ 153 (340)
T 3iyz_A 121 MVCTRKISIAKSVFYITAQCLGAIIGAGILYLV 153 (340)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445689999999999999999999999877654
No 2
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=19.21 E-value=4.5e+02 Score=24.50 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=28.2
Q ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 012031 388 EYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKLI 422 (472)
Q Consensus 388 ~~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~~i~ 422 (472)
.....|+++|.-.....+..++|+++|+.+++-+-
T Consensus 76 a~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~ 110 (258)
T 3c02_A 76 GLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLY 110 (258)
T ss_dssp HHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566889999889999999999999988776553
No 3
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=17.73 E-value=3.5e+02 Score=26.16 Aligned_cols=33 Identities=9% Similarity=0.366 Sum_probs=27.8
Q ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012031 389 YYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 421 (472)
Q Consensus 389 ~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~~i 421 (472)
....|+++|.-....++..++|+++|+.++.-+
T Consensus 82 ~~~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~ 114 (301)
T 2zz9_A 82 MVCTRKISIAKSVFYITAQCLGAIIGAGILYLV 114 (301)
T ss_dssp HHHTSSSCTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456689999999999999999999999887654
No 4
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=17.47 E-value=5.2e+02 Score=24.22 Aligned_cols=33 Identities=15% Similarity=0.348 Sum_probs=27.9
Q ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012031 389 YYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 421 (472)
Q Consensus 389 ~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~~i 421 (472)
....|+++|.......+..++|+++|+.+.+.+
T Consensus 75 ~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 107 (263)
T 2b6o_A 75 FLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSV 107 (263)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999887765
No 5
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=16.70 E-value=1.2e+02 Score=30.04 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.8
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhh
Q 012031 143 IDYDLALLFQPLLVLGISIGVAFNV 167 (472)
Q Consensus 143 Id~~l~~~~~~~~llG~~iGa~l~~ 167 (472)
++|..+....++-++|+++|+.+..
T Consensus 127 ~~~~~~~~YiiAQ~lGA~~GA~lv~ 151 (340)
T 3iyz_A 127 ISIAKSVFYITAQCLGAIIGAGILY 151 (340)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999997754
No 6
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=15.18 E-value=2.2e+02 Score=26.90 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=27.9
Q ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012031 389 YYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 421 (472)
Q Consensus 389 ~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~~i 421 (472)
....|+++|.......+..++|+++|+.++.-+
T Consensus 98 ~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 130 (256)
T 3llq_A 98 LTVAGRFPASSLVPYVIAQVAGAIVAAAALYVI 130 (256)
T ss_dssp HHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345699999999999999999999999887654
No 7
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=14.54 E-value=2.5e+02 Score=25.69 Aligned_cols=33 Identities=12% Similarity=0.384 Sum_probs=28.0
Q ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012031 389 YYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 421 (472)
Q Consensus 389 ~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~~i 421 (472)
....|+++|.......+..++|+++|+.+++-+
T Consensus 73 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~ 105 (223)
T 3gd8_A 73 MVCTRKISIAKSVFYIAAQCLGAIIGAGILYLV 105 (223)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445699999999999999999999999887653
No 8
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=14.52 E-value=2.5e+02 Score=25.91 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=28.4
Q ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012031 388 EYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 421 (472)
Q Consensus 388 ~~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~~i 421 (472)
.....|+++|.......+..++|+++|+.+.+-+
T Consensus 72 a~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 105 (234)
T 2o9g_A 72 GLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI 105 (234)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999877644
No 9
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=14.14 E-value=2.6e+02 Score=26.50 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=28.4
Q ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012031 389 YYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 421 (472)
Q Consensus 389 ~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~~i 421 (472)
....|+++|.-.....+..++|+++|+.+.+-+
T Consensus 77 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~ 109 (266)
T 3d9s_A 77 LLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 109 (266)
T ss_dssp HHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999999999887764
No 10
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=13.91 E-value=2.6e+02 Score=26.70 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=27.9
Q ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012031 388 EYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 421 (472)
Q Consensus 388 ~~~~~G~i~~~~~l~l~~ga~iGa~iG~~l~~~i 421 (472)
.....|+++|.-.....+..++|+++|+.++.-+
T Consensus 118 a~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 151 (279)
T 2w2e_A 118 ALVLARAIPPFRGILMAFTQIVAGMAAAGAASAM 151 (279)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999877653
Done!