BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012033
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli.
pdb|1XQF|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli
Length = 418
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 208/425 (48%), Gaps = 23/425 (5%)
Query: 21 SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWV 80
+P +KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 81 LWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS 140
++ + +AFG G + + + L G + +V FQ +FA ITV L+ G+
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELTAV-MGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 141 LLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTA 199
L R+ F A +IFV +WLT SY A +WGGG L + +D+AGG V+H+++ ++G
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 200 AYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCA 259
AY +G R + F P+N+ + G L++GW GFN GS A IAALA VNT +
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 260 ATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYT 319
A ++L W+ + + K S++GA G I GLV +TP G + GAL++G ++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 320 MMVLHRRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMMYGPDKHGPGLFYS 379
+ +L R L VDD VF H V A +L G G
Sbjct: 299 VTMLKRLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---------GGVGFAEG 345
Query: 380 LFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-AH 438
+ G Q Q+ A W+ +V + V LR+ + G D +H
Sbjct: 346 VTMGH------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSH 399
Query: 439 GEEAY 443
GE AY
Sbjct: 400 GENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NOP|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|3C1G|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 208/425 (48%), Gaps = 23/425 (5%)
Query: 21 SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWV 80
+P +KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 81 LWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS 140
++ + +AFG G + + + L G + +V FQ +FA ITV L+ G+
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELTAV-MGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 141 LLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTA 199
L R+ F A +IFV +WLT SY A +WGGG L + +D+AGG V+H+++ ++G
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 200 AYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCA 259
AY +G R + F P+N+ + G L++GW GFN GS A IAALA VNT +
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 260 ATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYT 319
A ++L W+ + + K S++GA G I GLV +TP G + GAL++G ++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 320 MMVLHRRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMMYGPDKHGPGLFYS 379
+ +L R L VDD VF H V A +L G G
Sbjct: 299 VTMLKRLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---------GGVGFAEG 345
Query: 380 LFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-AH 438
+ G Q Q+ A W+ +V + V LR+ + G D +H
Sbjct: 346 VTMGH------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSH 399
Query: 439 GEEAY 443
GE AY
Sbjct: 400 GENAY 404
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb
Complexed With The Signal Transduction Protein Glnk
Length = 412
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 208/425 (48%), Gaps = 23/425 (5%)
Query: 21 SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWV 80
+P +KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 81 LWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS 140
++ + +AFG G + + + L G + +V FQ +FA ITV L+ G+
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELTAV-MGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 141 LLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTA 199
L R+ F A +IFV +WLT SY A +WGGG L + +D+AGG V+H+++ ++G
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 200 AYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCA 259
AY +G R + F P+N+ + G L++GW GFN GS A IAALA VNT +
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 260 ATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYT 319
A ++L W+ + + K S++GA G I GLV +TP G + GAL++G ++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 320 MMVLHRRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMMYGPDKHGPGLFYS 379
+ +L R L VDD VF H V A +L G G
Sbjct: 299 VTMLKRLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---------GGVGFAEG 345
Query: 380 LFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-AH 438
+ G Q Q+ A W+ +V + V LR+ + G D +H
Sbjct: 346 VTMGH------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSH 399
Query: 439 GEEAY 443
GE AY
Sbjct: 400 GENAY 404
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|B Chain B, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|C Chain C, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|D Chain D, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|E Chain E, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|F Chain F, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
Length = 415
Score = 188 bits (477), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 206/420 (49%), Gaps = 23/420 (5%)
Query: 26 NKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQ 85
+KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + WV++ +
Sbjct: 15 DKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYS 74
Query: 86 MAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRM 145
+AFG G + + + L G + +V FQ +FA ITV L+ G+L R+
Sbjct: 75 LAFGEGN-NFFGNINWLMLKNIELTAV-MGSIYQYIHVAFQGSFACITVGLIVGALAERI 132
Query: 146 NFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTAAYWVG 204
F A +IFV +WLT SY A +WGGG L + +D+AGG V+H+++ ++G AY +G
Sbjct: 133 RFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIG 192
Query: 205 PRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLL 264
R + F P+N+ + G L++GW GFN GS A IAALA VNT + A ++L
Sbjct: 193 KRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAIL 252
Query: 265 VWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLH 324
W+ + + K S++GA G I GLV +TP G + GAL++G ++G + + +L
Sbjct: 253 GWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLK 312
Query: 325 RRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMMYGPDKHGPGLFYSLFNGQ 384
R L VDD VF H V A +L G G + G
Sbjct: 313 RLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---------GGVGFAEGVTMGH 359
Query: 385 IEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-AHGEEAY 443
Q Q+ A W+ +V + V LR+ + G D +HGE AY
Sbjct: 360 ------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSHGENAY 413
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 207/425 (48%), Gaps = 23/425 (5%)
Query: 21 SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWV 80
+P +KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 81 LWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS 140
++ + +AFG G + + + L G + +V FQ +FA ITV L+ G+
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELTAV-MGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 141 LLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTA 199
L R+ F A +IFV +WLT SY A +WGGG L + +D+AGG V+ +++ ++G
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVEINAAIAGLVG 178
Query: 200 AYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCA 259
AY +G R + F P+N+ + G L++GW GFN GS A IAALA VNT +
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 260 ATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYT 319
A ++L W+ + + K S++GA G I GLV +TP G + GAL++G ++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 320 MMVLHRRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMMYGPDKHGPGLFYS 379
+ +L R L VDD VF H V A +L G G
Sbjct: 299 VTMLKRLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---------GGVGFAEG 345
Query: 380 LFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-AH 438
+ G Q Q+ A W+ +V + V LR+ + G D +H
Sbjct: 346 VTMGH------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSH 399
Query: 439 GEEAY 443
GE AY
Sbjct: 400 GENAY 404
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 207/425 (48%), Gaps = 23/425 (5%)
Query: 21 SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWV 80
+P +KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 81 LWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS 140
++ + +AFG G + + + L G + +V FQ +FA ITV L+ G+
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELTAV-MGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 141 LLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTA 199
L R+ F A +IFV +WLT SY A +WGGG L + +D+AGG V+H+++ ++G
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 200 AYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCA 259
AY +G R + F P+N+ + G L++GW G N GS A IAALA VNT +
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAGTANEIAALAFVNTVVAT 238
Query: 260 ATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYT 319
A ++L W+ + + K S++GA G I GLV +TP G + GAL++G ++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 320 MMVLHRRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMMYGPDKHGPGLFYS 379
+ +L R L VDD VF H V A +L G G
Sbjct: 299 VTMLKRLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---------GGVGFAEG 345
Query: 380 LFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-AH 438
+ G Q Q+ A W+ +V + V LR+ + G D +H
Sbjct: 346 VTMGH------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSH 399
Query: 439 GEEAY 443
GE AY
Sbjct: 400 GENAY 404
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 207/425 (48%), Gaps = 23/425 (5%)
Query: 21 SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWV 80
+P +KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 81 LWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS 140
++ + +AFG G + + + L G + +V FQ + A ITV L+ G+
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELTAV-MGSIYQYIHVAFQGSAACITVGLIVGA 118
Query: 141 LLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTA 199
L R+ F A +IFV +WLT SY A +WGGG L + +D+AGG V+H+++ ++G
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 200 AYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCA 259
AY +G R + F P+N+ + G L++GW GFN GS A IAALA VNT +
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 260 ATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYT 319
A ++L W+ + + K S++GA G I GLV +TP G + GAL++G ++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 320 MMVLHRRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMMYGPDKHGPGLFYS 379
+ +L R L VDD VF H V A +L G G
Sbjct: 299 VTMLKRLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---------GGVGFAEG 345
Query: 380 LFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-AH 438
+ G Q Q+ A W+ +V + V LR+ + G D +H
Sbjct: 346 VTMGH------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSH 399
Query: 439 GEEAY 443
GE AY
Sbjct: 400 GENAY 404
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 207/425 (48%), Gaps = 23/425 (5%)
Query: 21 SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWV 80
+P +KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 81 LWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS 140
++ + +AFG G + + + L G + +V FQ +FA ITV L+ G+
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELTAV-MGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 141 LLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTA 199
L R+ F A +IFV +WLT SY A +WGGG L + +D+AGG V+ +++ ++G
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVFINAAIAGLVG 178
Query: 200 AYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCA 259
AY +G R + F P+N+ + G L++GW GFN GS A IAALA VNT +
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 260 ATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYT 319
A ++L W+ + + K S++GA G I GLV +TP G + GAL++G ++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 320 MMVLHRRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMMYGPDKHGPGLFYS 379
+ +L R L VDD VF H V A +L G G
Sbjct: 299 VTMLKRLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---------GGVGFAEG 345
Query: 380 LFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-AH 438
+ G Q Q+ A W+ +V + V LR+ + G D +H
Sbjct: 346 VTMGH------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSH 399
Query: 439 GEEAY 443
GE AY
Sbjct: 400 GENAY 404
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NPJ|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 207/425 (48%), Gaps = 23/425 (5%)
Query: 21 SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWV 80
+P +KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 81 LWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS 140
++ + +AFG G + + + L G + +V FQ +FA ITV L+ G+
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELTAV-MGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 141 LLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTA 199
L R+ F A +IFV +WLT SY A +WGGG L + +D+AGG V+H+++ ++G
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 200 AYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCA 259
AY +G R + F P+N+ + G L++GW GFN GS A IAALA VNT +
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 260 ATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYT 319
A ++L W+ + + K S++GA G I GLV +TP G + GAL++G ++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 320 MMVLHRRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMMYGPDKHGPGLFYS 379
+ +L R L VDD VF V A +L G G
Sbjct: 299 VTMLKRLL----RVDDPCDVFGVFGVCGIVGCIMTGIFAASSL---------GGVGFAEG 345
Query: 380 LFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-AH 438
+ G Q Q+ A W+ +V + V LR+ + G D +H
Sbjct: 346 VTMGH------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSH 399
Query: 439 GEEAY 443
GE AY
Sbjct: 400 GENAY 404
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 207/425 (48%), Gaps = 23/425 (5%)
Query: 21 SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWV 80
+P +KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 81 LWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS 140
++ + +AFG G + + + L G + +V FQ +FA ITV L+ G+
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELTAV-MGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 141 LLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTA 199
L R+ F A +IFV +WLT SY A +WGGG L + +D+AGG V+ +++ ++G
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVAINAAIAGLVG 178
Query: 200 AYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCA 259
AY +G R + F P+N+ + G L++GW GFN GS A IAALA VNT +
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 260 ATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYT 319
A ++L W+ + + K S++GA G I GLV +TP G + GAL++G ++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 320 MMVLHRRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMMYGPDKHGPGLFYS 379
+ +L R L VDD VF H V A +L G G
Sbjct: 299 VTMLKRLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---------GGVGFAEG 345
Query: 380 LFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-AH 438
+ G Q Q+ A W+ +V + V LR+ + G D +H
Sbjct: 346 VTMGH------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSH 399
Query: 439 GEEAY 443
GE AY
Sbjct: 400 GENAY 404
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 207/425 (48%), Gaps = 23/425 (5%)
Query: 21 SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWV 80
+P +KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 81 LWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS 140
++ + +AFG G + + + L G + +V FQ +FA ITV L+ G+
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELTAV-MGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 141 LLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTA 199
L R+ F A +IFV +WLT SY A +WGGG L + +D+AGG V+H+++ ++G
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 200 AYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCA 259
AY +G R + F P+N+ + G L++GW GFN GS A IAALA VNT +
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 260 ATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYT 319
A ++L W+ + + K S++GA G I GLV +TP G + GAL++G ++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 320 MMVLHRRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMMYGPDKHGPGLFYS 379
+ +L R L VDD VF V A +L G G
Sbjct: 299 VTMLKRLL----RVDDPCDVFGVAGVCGIVGCIMTGIFAASSL---------GGVGFAEG 345
Query: 380 LFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-AH 438
+ G Q Q+ A W+ +V + V LR+ + G D +H
Sbjct: 346 VTMGH------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSH 399
Query: 439 GEEAY 443
GE AY
Sbjct: 400 GENAY 404
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 206/425 (48%), Gaps = 23/425 (5%)
Query: 21 SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWV 80
+P +KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 81 LWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS 140
++ + +AFG G + + + L G + +V FQ + A ITV L+ G+
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELTAV-MGSIYQYIHVAFQGSAACITVGLIVGA 118
Query: 141 LLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTA 199
L R+ F A +IFV +WLT SY A +WGGG L + +D+AGG V+H+++ ++G
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 200 AYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCA 259
AY +G R + F P+N+ + G L++GW G N GS A IAALA VNT +
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAGTANEIAALAFVNTVVAT 238
Query: 260 ATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYT 319
A ++L W+ + + K S++GA G I GLV +TP G + GAL++G ++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 320 MMVLHRRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMMYGPDKHGPGLFYS 379
+ +L R L VDD VF H V A +L G G
Sbjct: 299 VTMLKRLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---------GGVGFAEG 345
Query: 380 LFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-AH 438
+ G Q Q+ A W+ +V + V LR+ + G D +H
Sbjct: 346 VTMGH------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSH 399
Query: 439 GEEAY 443
GE AY
Sbjct: 400 GENAY 404
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 206/425 (48%), Gaps = 23/425 (5%)
Query: 21 SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWV 80
+P +KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 81 LWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS 140
++ + +AFG G + + + L G + +V FQ +FA ITV L+ G+
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELTAV-MGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 141 LLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTA 199
L R+ F A +IFV +WLT SY A +WGGG L + +D+AGG V+ +++ ++G
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVAINAAIAGLVG 178
Query: 200 AYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCA 259
AY +G R + F P+N+ + G L++GW GFN GS A IAALA VNT +
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 260 ATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYT 319
A ++L W+ + + K S++GA G I GLV +TP G + GAL++G ++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 320 MMVLHRRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMMYGPDKHGPGLFYS 379
+ +L R L VDD VF V A +L G G
Sbjct: 299 VTMLKRLL----RVDDPCDVFGVAGVCGIVGCIMTGIFAASSL---------GGVGFAEG 345
Query: 380 LFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-AH 438
+ G Q Q+ A W+ +V + V LR+ + G D +H
Sbjct: 346 VTMGH------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSH 399
Query: 439 GEEAY 443
GE AY
Sbjct: 400 GENAY 404
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
pdb|1U7C|A Chain A, Crystal Structure Of Amtb From E.Coli With Methyl
Ammonium.
pdb|1U7G|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
Length = 385
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 176/327 (53%), Gaps = 7/327 (2%)
Query: 21 SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWV 80
+P +KADNA+ T +V ++PG+ + YG +++ K ++ FA+V + WV
Sbjct: 1 APAVADKADNAFXXICTALVLFXTIPGIALFYGGLIRGKNVLSXLTQVTVTFALVCILWV 60
Query: 81 LWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS 140
++ + +A G G + L K + + G + +V FQ +FA ITV L+ G+
Sbjct: 61 VYGYSLASGEGN-NFFGNIN-WLXLKNIELTAVXGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 141 LLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTA 199
L R+ F A +IFV +WLT SY A +WGGG L + +D+AGG V+H+++ ++G
Sbjct: 119 LAERIRFPAVLIFVVVWLTLSYIPIAHXVWGGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 200 AYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCA 259
AY +G R + F P+N+ + G L++GW GFN GS A IAALA VNT +
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPXVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 260 ATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYT 319
A ++L W+ + + S++GA G I GLV +TP G + GAL++G ++G +
Sbjct: 239 AAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 320 MMVLHRRLVFFQSVDDTLGVFHTHAVA 346
+ L R L VDD VF H V
Sbjct: 299 VTXLKRLL----RVDDPCDVFGVHGVC 321
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native)
pdb|2B2H|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (as)
pdb|2B2I|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (Ma)
pdb|2B2J|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (xe)
Length = 399
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 127/425 (29%), Positives = 215/425 (50%), Gaps = 39/425 (9%)
Query: 26 NKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQ 85
+ + AW L +T +V L VPG+ Y MV++K AVN ++F + + ++ W+ + +
Sbjct: 2 SDGNVAWILASTALVMLM-VPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYS 60
Query: 86 MAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRM 145
++FG+ + ++G + AL L G+ + ++ +Q FAA+T+ +L ++ R
Sbjct: 61 VSFGNDISGIIGGLNYAL----LSGVKGEDLL----FMMYQMMFAAVTIAILTSAIAERA 112
Query: 146 NFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTAAYWVG 204
++++ LWLTF Y A +WGGG+L +D+AGG V+H+SSG + A +G
Sbjct: 113 KVSSFILLSALWLTFVYAPFAHWLWGGGWLAKLGALDFAGGMVVHISSGFAALAVAMTIG 172
Query: 205 PRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLL 264
R + ++ P++I L GA LW GW GFNGGS L A +A A+V T+ AA +
Sbjct: 173 KRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVAGF 232
Query: 265 VWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLH 324
VW+ + I K S +G V G I GL ITP AG V+ GA+++G ++G + + M
Sbjct: 233 VWMVIGWIKGKPGS-LGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRI 291
Query: 325 RRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNL---LTMMYGPDKHGPGLFYSLF 381
++ +D++L + H + A P + +++G P L S
Sbjct: 292 KK-----KIDESLDAWAIHGIGGLWGSVAVGILANPEVNGYAGLLFG----NPQLLVS-- 340
Query: 382 NGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIG-DDAAHGE 440
Q++ A TA+ +VT ++ V V LR+++ + +G D + H E
Sbjct: 341 -------------QLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQHEE 387
Query: 441 EAYAL 445
AY L
Sbjct: 388 VAYTL 392
>pdb|3HD6|A Chain A, Crystal Structure Of The Human Rhesus Glycoprotein Rhcg
Length = 490
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 12/221 (5%)
Query: 129 FAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPYIIDYAGGFVI 188
F +V + G++LG+++ +I +T + + F + L+ + D G I
Sbjct: 135 FCVASVCVAFGAVLGKVSPIQLLIMTFFQVTL-FAVNEFILLN--LLK--VKDAGGSMTI 189
Query: 189 HLSSGVSGFTAA---YWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAG 245
H G T Y S++R N + + + G FLW+ W FN G
Sbjct: 190 HTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISY-HG 248
Query: 246 RIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSV--IGAVQGMITGLVCI-TPGAGIVEP 302
A +NT+ A +L V++ ++KK + + + G V + T ++ P
Sbjct: 249 DSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMP 308
Query: 303 WGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTH 343
+GAL++G + G I + L L + DT G+ + H
Sbjct: 309 YGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLH 349
>pdb|2EA3|A Chain A, Crystal Structure Of Cellulomonas Bogoriensis Chymotrypsin
Length = 189
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 75/182 (41%), Gaps = 21/182 (11%)
Query: 161 SYTIGAFTIWGGGFLEPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNII 220
+YTIG + GF GGF+ ++G G T A P + +FP N+
Sbjct: 8 AYTIGGRSRCSIGFA------VNGGFI---TAGHCGRTGATTANPTGTFAGSSFPGNDYA 58
Query: 221 HMLGGAGFLWLGW-TGFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSV 279
+ GAG L ++GG VAG AA V + +C + S W I SSV
Sbjct: 59 FVRTGAGVNLLAQVNNYSGGRVQVAGHTAAP--VGSAVCRSGSTTGW-HCGTITALNSSV 115
Query: 280 I---GAVQGMITGLVCITPGAGIVEPWGALLMGAMS-GSIPWYTMMVLHRRLVFFQSVDD 335
G V+G+I VC PG + G+LL G + G + FFQ V+
Sbjct: 116 TYPEGTVRGLIRTTVCAEPG----DSGGSLLAGNQAQGVTSGGSGNCRTGGTTFFQPVNP 171
Query: 336 TL 337
L
Sbjct: 172 IL 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,559,152
Number of Sequences: 62578
Number of extensions: 606425
Number of successful extensions: 1429
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1376
Number of HSP's gapped (non-prelim): 21
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)