Query 012033
Match_columns 472
No_of_seqs 145 out of 1201
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:54:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0004 AmtB Ammonia permease 100.0 4E-111 9E-116 859.4 37.3 401 25-446 1-405 (409)
2 KOG0682 Ammonia permease [Inor 100.0 4E-110 1E-114 860.6 33.9 416 17-445 20-444 (500)
3 PRK10666 ammonium transporter; 100.0 2E-105 4E-110 835.6 36.1 400 24-445 26-428 (428)
4 TIGR00836 amt ammonium transpo 100.0 2E-102 5E-107 809.5 37.2 394 30-443 1-403 (403)
5 TIGR03644 marine_trans_1 proba 100.0 6E-102 1E-106 805.3 35.9 380 28-445 3-403 (404)
6 PF00909 Ammonium_transp: Ammo 100.0 4.6E-94 1E-98 750.8 20.1 389 31-443 1-399 (399)
7 KOG3796 Ammonium transporter R 100.0 3.6E-45 7.7E-50 364.0 17.3 382 37-434 13-426 (442)
8 PF00909 Ammonium_transp: Ammo 83.4 17 0.00037 38.5 12.6 141 23-206 183-328 (399)
9 PF01891 CbiM: Cobalt uptake s 75.4 22 0.00048 34.0 9.6 21 184-207 61-81 (205)
10 PF06946 Phage_holin_5: Phage 62.2 36 0.00079 28.9 6.8 72 262-335 15-92 (93)
11 TIGR03644 marine_trans_1 proba 61.6 1.8E+02 0.0039 31.2 13.7 137 24-203 199-343 (404)
12 PRK10712 PTS system fructose-s 54.5 55 0.0012 36.5 8.7 107 217-338 236-344 (563)
13 PRK11624 cdsA CDP-diglyceride 50.8 20 0.00044 36.3 4.3 82 262-344 164-258 (285)
14 PF06570 DUF1129: Protein of u 48.7 50 0.0011 31.6 6.5 110 218-335 77-205 (206)
15 PF01148 CTP_transf_1: Cytidyl 46.4 13 0.00027 36.1 2.0 67 277-344 161-236 (259)
16 PF04657 DUF606: Protein of un 42.7 1.9E+02 0.0041 26.0 8.9 85 302-423 30-114 (138)
17 PRK08319 cobalt transport prot 42.1 2.3E+02 0.0051 27.6 10.1 28 174-207 56-84 (224)
18 PF14074 DUF4257: Protein of u 39.9 12 0.00026 31.0 0.6 58 257-314 4-74 (82)
19 TIGR00836 amt ammonium transpo 39.7 5E+02 0.011 27.8 16.3 140 25-206 191-333 (403)
20 PRK07331 cobalt transport prot 39.1 4.6E+02 0.01 27.2 12.1 21 184-207 62-82 (322)
21 PF12270 Cyt_c_ox_IV: Cytochro 37.7 1.2E+02 0.0026 27.6 6.7 40 156-202 16-55 (137)
22 PLN02594 phosphatidate cytidyl 36.2 15 0.00033 38.2 0.8 42 302-344 235-276 (342)
23 PRK06433 NADH dehydrogenase su 36.0 58 0.0013 27.3 4.1 41 390-433 47-87 (88)
24 PRK10478 putative PTS system f 36.0 1.1E+02 0.0024 32.3 7.0 103 298-419 211-336 (359)
25 PRK11909 cobalt transport prot 35.4 4.4E+02 0.0095 25.9 10.8 23 304-326 190-212 (230)
26 PRK10457 hypothetical protein; 34.5 74 0.0016 26.3 4.4 39 282-320 7-47 (82)
27 COG4120 ABC-type uncharacteriz 34.4 21 0.00045 35.9 1.4 46 286-335 42-87 (293)
28 PRK10263 DNA translocase FtsK; 32.9 2.4E+02 0.0053 34.7 9.9 16 343-358 140-155 (1355)
29 PRK10666 ammonium transporter; 32.3 6.7E+02 0.015 27.1 14.5 137 26-205 216-356 (428)
30 KOG3796 Ammonium transporter R 32.3 5.5E+02 0.012 27.4 11.2 107 251-363 84-200 (442)
31 COG1299 FruA Phosphotransferas 31.0 4E+02 0.0086 28.0 10.0 65 281-356 77-143 (343)
32 PRK10478 putative PTS system f 30.8 3.3E+02 0.0072 28.7 9.6 94 216-317 20-118 (359)
33 TIGR00123 cbiM cobalamin biosy 30.4 3.1E+02 0.0068 26.6 8.8 120 183-325 63-206 (214)
34 PRK06265 cobalt transport prot 29.1 5.1E+02 0.011 24.7 10.5 24 174-204 50-74 (199)
35 TIGR01427 PTS_IIC_fructo PTS s 28.7 3E+02 0.0066 28.8 8.9 49 271-325 84-132 (346)
36 PF06738 DUF1212: Protein of u 27.5 96 0.0021 29.0 4.6 69 215-294 99-169 (193)
37 COG5070 VRG4 Nucleotide-sugar 26.2 94 0.002 30.9 4.2 65 256-321 224-299 (309)
38 COG0575 CdsA CDP-diglyceride s 22.2 80 0.0017 31.5 3.1 67 277-344 166-241 (265)
39 MTH00213 ND6 NADH dehydrogenas 22.0 2.2E+02 0.0047 28.0 5.7 31 390-420 42-72 (239)
40 COG4589 Predicted CDP-diglycer 21.2 55 0.0012 32.8 1.6 66 278-344 207-278 (303)
41 COG3965 Predicted Co/Zn/Cd cat 20.7 5.4E+02 0.012 26.2 8.4 106 195-315 64-183 (314)
No 1
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-111 Score=859.37 Aligned_cols=401 Identities=37% Similarity=0.696 Sum_probs=374.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcccCcchhhh
Q 012033 25 NNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALS 104 (472)
Q Consensus 25 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fiG~~~~~~~ 104 (472)
+|+.|++|+|+|++|| ++|||||+|+|+|++|+||++|+++|+++++++++++|+++||+++||++.++|+|+..+.+.
T Consensus 1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~~~ 79 (409)
T COG0004 1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQFFL 79 (409)
T ss_pred CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHHhc
Confidence 3679999999999999 999999999999999999999999999999999999999999999999866789999776544
Q ss_pred cccccCCCC-CCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceee-ccccc-cccccc
Q 012033 105 EKYLLEPSG-DGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIW-GGGFL-EPYIID 181 (472)
Q Consensus 105 ~~~~~~~~~-~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW-~~GwL-~lG~~D 181 (472)
.+...++.. ..++|+.++++||++||++|++|++|+++||+|+++|++|+++|.++||||++||+| ++||| ++|++|
T Consensus 80 ~~~~~~~~~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWvWggggwl~~~g~~D 159 (409)
T COG0004 80 NGLGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLALLGALD 159 (409)
T ss_pred cCccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeEecCchHHHhcCcee
Confidence 443223322 247999999999999999999999999999999999999999999999999999999 67799 999999
Q ss_pred cCCceehhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHH
Q 012033 182 YAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAAT 261 (472)
Q Consensus 182 faG~~vVH~~gG~~aL~~a~~lG~R~~r~~~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~ 261 (472)
||||+|||..+|++||++++++|||+++.++++||||++++++|+.+||+||||||+||++..+.++..+++||++|+++
T Consensus 160 FAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa~ 239 (409)
T COG0004 160 FAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAA 239 (409)
T ss_pred cCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCccc
Q 012033 262 SLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFH 341 (472)
Q Consensus 262 g~l~~~~~~~~~~~k~s~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~ 341 (472)
|+++|++++|+++||+|+..+|||++||||+|||+|++|+||+|++||+++|++|++++++++|| +|+|||+|+++
T Consensus 240 g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~----l~~DD~ld~f~ 315 (409)
T COG0004 240 GALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKK----LGVDDALDVFG 315 (409)
T ss_pred HHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999988886 89999999999
Q ss_pred cccchhhHHHHHHHHccccccccccCCCCCCCCcccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012033 342 THAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLV 421 (472)
Q Consensus 342 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~~l~~~~ 421 (472)
+||++|+||++++|+|++++.. ...|++|+ +++|++.|+.+++++.+|++++++++++++|++.
T Consensus 316 vHGvgGi~G~i~~GiFa~~~~~--------~~~G~~~~--------~~~~l~~Q~~~v~~~~~~~~v~t~ii~~vl~~~~ 379 (409)
T COG0004 316 VHGVGGIVGAILTGIFAAPAVG--------GGGGLFYG--------GGVQLGVQLLGVLVTIVYAFVVTFIILKVLKLII 379 (409)
T ss_pred ccchhhHHHHHHHHHhcCcccc--------ccCccccc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998641 12355542 4599999999999999999999999999999999
Q ss_pred cCCCChhHhhcc-ChhhhChhhhccc
Q 012033 422 NLRMNADDLEIG-DDAAHGEEAYALW 446 (472)
Q Consensus 422 ~LRv~~e~E~~G-D~~~hg~~ay~~~ 446 (472)
+||++||||++| |.+||||++|++.
T Consensus 380 gLRvs~eeE~~GlD~~~Hge~aY~~~ 405 (409)
T COG0004 380 GLRVSEEEELEGLDISEHGESAYSEE 405 (409)
T ss_pred CCCCCHHHHhhCCChHHhcccccccc
Confidence 999999999999 9999999999874
No 2
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-110 Score=860.60 Aligned_cols=416 Identities=35% Similarity=0.581 Sum_probs=385.4
Q ss_pred CCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC-CCCc
Q 012033 17 PNEASPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSA-LIPL 95 (472)
Q Consensus 17 ~~~~~~~~~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~-~~~f 95 (472)
+++++++.+|..|+.|++.++.+| |+|||||+|||+|+||+||++|+|+||+++.+++.++||++||+||||+. .++|
T Consensus 20 ~~~~~~~~y~~dn~~~l~sss~lv-F~M~~Gfg~L~sG~vr~Kna~nim~~nvld~a~g~l~y~~~GyslAFg~~~~n~F 98 (500)
T KOG0682|consen 20 LTKFTPNAYDLDNTAWLLSSSFLV-FTMQPGFGLLYSGLVRAKNAVNIMLKNVLDVAVGGLQYYLFGYSLAFGDSPSNGF 98 (500)
T ss_pred ccccCcchhcCCchhhHHHHHHHH-HHhcccHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeeccCCCCCCc
Confidence 467788889999999999999999 99999999999999999999999999999999999999999999999987 7899
Q ss_pred ccCcchhhhcccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceee-cccc
Q 012033 96 MGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIW-GGGF 174 (472)
Q Consensus 96 iG~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW-~~Gw 174 (472)
+|...++...++..+++..+++|+..+++||++||+++++|++|+++||+|+.+|++|+++|.++||||++||+| +|||
T Consensus 99 iG~~~~F~~~~~~g~~~~~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~~~tlVY~~~a~W~W~~~Gw 178 (500)
T KOG0682|consen 99 IGKLDFFGLRNVSGDPSSGSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFFLTTLVYCPVAHWVWSPNGW 178 (500)
T ss_pred eeeccccccccCCCCcCCccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHhcccccceeeecCCce
Confidence 999886444444434443344899999999999999999999999999999999999999999999999999999 7999
Q ss_pred c-cccccccCCceehhhhHHHHHHHHHHHHcCCCCCC---CCCCCCCcHHHHHHHHHHHHHhhhcccccccccccchhh-
Q 012033 175 L-EPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRD---RHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAA- 249 (472)
Q Consensus 175 L-~lG~~DfaG~~vVH~~gG~~aL~~a~~lG~R~~r~---~~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~- 249 (472)
+ ++|++|||||++||++||++||++++++|||++|+ .+++||||+++++||+++|||||++||+||.++++.+..
T Consensus 179 ~~~~gviDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~~~~~~~~~hsv~~v~LGt~lLWfGWl~FN~GS~~~i~~~~~~ 258 (500)
T KOG0682|consen 179 LYKLGVIDFAGGGVVHLVGGVAGLVAALILGPRIGRFFGKAIALRPHSVTLVVLGTFLLWFGWLGFNGGSFYAINLRSWA 258 (500)
T ss_pred eeecceeeccCCceeEecccHHHHHHHHHhCCccCcccccccccCCCchhHHHHHHHHHHHHHHccCCcccccccchhHH
Confidence 9 99999999999999999999999999999999973 467899999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhhhhcc
Q 012033 250 LAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVF 329 (472)
Q Consensus 250 ~a~~NT~la~a~g~l~~~~~~~~~~~k~s~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~ 329 (472)
++++||+||++.|++||++++|+++||||+..+|||+|+|||||||+|++++||+|+++|+++|++|..+.+..++
T Consensus 259 ~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~~~cnG~laGlVaiT~gc~~v~pWaAiviG~va~~~~~~~~kL~~~---- 334 (500)
T KOG0682|consen 259 RAAVNTILSGATGGLTWLIIDYLRHGKWSVIGLCNGILAGLVAITPGCGVVEPWAAIVIGAVAGLVCNAANKLKER---- 334 (500)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcCCcchhhhHHHHHHHHHhhcCCCcccCcHHHHHHhHHHHHHHHHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988875554
Q ss_pred ccccccccCccccccchhhHHHHHHHHccccccccccCCCCCCCCcccccccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 012033 330 FQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIV 409 (472)
Q Consensus 330 ~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~ 409 (472)
+|||||+|++++|++||+||.|++|+|+.+.....++...+...|+++++ +++|+++|+++++++.+|++++
T Consensus 335 -lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~~~~~~~~~~~~G~~~~~-------~~kqLg~Qla~i~ai~~ws~~~ 406 (500)
T KOG0682|consen 335 -LKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVAAMDGTTIARISGLWMGH-------GFKQLGYQLAGILAIAAWSAVV 406 (500)
T ss_pred -hcCCcHHHHHHHhccccchhhheeeeeccCccccccCCCccCCCceeecc-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988776553333456766653 6799999999999999999999
Q ss_pred HHHHHHHHHhhcc-CCCChhHhhcc-ChhhhChhhhcc
Q 012033 410 TSLICIFVSRLVN-LRMNADDLEIG-DDAAHGEEAYAL 445 (472)
Q Consensus 410 ~~ii~~~l~~~~~-LRv~~e~E~~G-D~~~hg~~ay~~ 445 (472)
+++++++|+|+.+ ||+++|||+.| |..||||.+|+.
T Consensus 407 t~iilf~l~kip~~LRvs~e~E~~G~D~~~hGe~ay~~ 444 (500)
T KOG0682|consen 407 TFIILFLLNKIPLGLRVSEEEEELGMDATEHGEAAYDY 444 (500)
T ss_pred HHHHHHHHhhccceeecCHHHHhcCCCHhhhhhhhcch
Confidence 9999999999988 99999999999 999999999975
No 3
>PRK10666 ammonium transporter; Provisional
Probab=100.00 E-value=1.9e-105 Score=835.59 Aligned_cols=400 Identities=35% Similarity=0.584 Sum_probs=366.6
Q ss_pred ccccchhHHHHHHHHHHHHHHH-HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcccCcchh
Q 012033 24 WNNKADNAWQLTATTMVCLQSV-PGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVA 102 (472)
Q Consensus 24 ~~~~~d~~w~l~~~~lV~~~m~-~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fiG~~~~~ 102 (472)
.+|+.|+.|+|+|++|| |+|| |||+|+|+|+||+||++|+++||++++++++++||++||+++||++ ++|+|..+++
T Consensus 26 ~~~~~d~~w~l~~~~lV-~~M~~~Gfalle~G~vR~KN~~n~~~k~~~~~~~~~l~w~~~Gy~lafg~~-~~~iG~~~~~ 103 (428)
T PRK10666 26 VADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEG-NAFFGNFNWL 103 (428)
T ss_pred ccccccHHHHHHHHHHH-HHHHHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHeeeeeeHHHHhCCC-CCcccChHHh
Confidence 57889999999999999 9998 9999999999999999999999999999999999999999999975 5789876654
Q ss_pred hhcccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeeccccc-cccccc
Q 012033 103 LSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL-EPYIID 181 (472)
Q Consensus 103 ~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL-~lG~~D 181 (472)
+..+...++ ..+++|...+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+|++||| ++|++|
T Consensus 104 ~~~~~~~~~-~~~~~~~~~~~~FQ~~Faa~a~tIvsGavaER~~~~~~lif~~~~~~~vY~~vahWvW~~GwL~~lG~~D 182 (428)
T PRK10666 104 MLKNIELTA-VMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASDGALD 182 (428)
T ss_pred hhcCCCccc-ccccchhHHHHHHHHHHHHHHHHHHHhHhhccccHHHHHHHHHHHHHHHHHHhhhheeCchhHhhcchhh
Confidence 433221111 134578888999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCceehhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHH
Q 012033 182 YAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAAT 261 (472)
Q Consensus 182 faG~~vVH~~gG~~aL~~a~~lG~R~~r~~~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~ 261 (472)
||||++||++||++||++++++|||+++.+++++|||++++++|+++||+||||||+||++..+..+.++++||++|+++
T Consensus 183 fAG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hn~~~~~lGt~lLw~GW~gFN~Gs~~~~~~~a~~a~~nT~la~a~ 262 (428)
T PRK10666 183 FAGGTVVHINAAVAGLVGAYLLGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGAANEIAALAFVNTVVATAA 262 (428)
T ss_pred hcccchhHHhHHHHHHHHHHHhcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccchhhccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCccc
Q 012033 262 SLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFH 341 (472)
Q Consensus 262 g~l~~~~~~~~~~~k~s~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~ 341 (472)
|+++|++++++.+||+|+..++||+|||||+|||+|++++||+|+++|+++|++|+++.++++|| +|||||+|+++
T Consensus 263 g~l~~~~~~~~~~gk~~~~~~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~~----~~iDD~~~a~~ 338 (428)
T PRK10666 263 AILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKRW----LRVDDPCDVFG 338 (428)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCcCccH
Confidence 99999999999999999999999999999999999999999999999999999999998887765 89999999999
Q ss_pred cccchhhHHHHHHHHccccccccccCCCCCCCCcccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012033 342 THAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLV 421 (472)
Q Consensus 342 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~~l~~~~ 421 (472)
+|++||+||.+++|+|++++.....+ ..|.. ..+|+++|++|++++++|++++++++++++|++.
T Consensus 339 vHgv~Gi~G~l~~glfa~~~~~~~~~-----~~g~~----------~~~ql~~Ql~g~~~~~~~~~~~t~ii~~il~~~~ 403 (428)
T PRK10666 339 VHGVCGIVGCILTGIFAASSLGGVGY-----AEGVT----------MGHQVLVQLESIAITIVWSGVVAFIGYKLADLTV 403 (428)
T ss_pred hhhHhHHHHHHHHHHhhchhccCccc-----cCccc----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999875321100 01111 2389999999999999999999999999999999
Q ss_pred cCCCChhHhhcc-ChhhhChhhhcc
Q 012033 422 NLRMNADDLEIG-DDAAHGEEAYAL 445 (472)
Q Consensus 422 ~LRv~~e~E~~G-D~~~hg~~ay~~ 445 (472)
+||+++|||+.| |.+||||++|++
T Consensus 404 ~lRvs~e~E~~GlD~~~hg~~ay~~ 428 (428)
T PRK10666 404 GLRVPEEQEREGLDVNSHGENAYNA 428 (428)
T ss_pred cCcCCHHHHHhCCChhHhCccccCC
Confidence 999999999999 999999999963
No 4
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=100.00 E-value=2.4e-102 Score=809.51 Aligned_cols=394 Identities=37% Similarity=0.696 Sum_probs=361.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC--CCCCcccCcchhhhccc
Q 012033 30 NAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGS--ALIPLMGKPDVALSEKY 107 (472)
Q Consensus 30 ~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~--~~~~fiG~~~~~~~~~~ 107 (472)
++|+++|++|| |+|||||+|+|+|+||+||++|+++||++++++++++||++||+++||+ +.++|+|...+++ .+.
T Consensus 1 ~~w~l~~~~lV-~~M~~Gfalle~G~vr~kn~~n~l~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~~~iG~~~~~~-~~~ 78 (403)
T TIGR00836 1 TAWLLIAAALV-FFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGEDNPINGFIGTGGFGL-KNF 78 (403)
T ss_pred ChHHHHHHHHH-HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhheehHHHHhCCCCCCCCCcCchHHhh-ccC
Confidence 58999999999 9999999999999999999999999999999999999999999999998 4578999874333 221
Q ss_pred ccCC--CCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceee-ccccc-cccccccC
Q 012033 108 LLEP--SGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIW-GGGFL-EPYIIDYA 183 (472)
Q Consensus 108 ~~~~--~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW-~~GwL-~lG~~Dfa 183 (472)
..++ ...+++|..++++||++||++|++|++|+++||+|+.+|++|+++|++++|||++||+| ++||| ++|++|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~fq~~Fa~~t~~I~sGavaeR~~~~~~~v~~~~~~~~vY~~~ahwvW~~~GwL~~lG~~DfA 158 (403)
T TIGR00836 79 LYPGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGGGGWLYKLGVLDFA 158 (403)
T ss_pred CcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccceeecCCchhhccCcchhc
Confidence 1111 11345788899999999999999999999999999999999999999999999999999 59999 99999999
Q ss_pred CceehhhhHHHHHHHHHHHHcCCCCCC--CCCCCCCcHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHH
Q 012033 184 GGFVIHLSSGVSGFTAAYWVGPRHSRD--RHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAAT 261 (472)
Q Consensus 184 G~~vVH~~gG~~aL~~a~~lG~R~~r~--~~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~ 261 (472)
||++||++||++||+++++||||++|+ ++++||||++++++|+++||+||+|||+||++..+..+.++++||++|+|+
T Consensus 159 G~~vVH~~gG~~~L~~a~~LGpR~~r~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~Gs~~~~~~~~~~a~~nT~lA~a~ 238 (403)
T TIGR00836 159 GGGVVHIVGGVAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTAAYAAVNTNLAAAA 238 (403)
T ss_pred CceeEecchhHHHHHHHHHhcCCCCCCcCcCCCCCCCHHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 678899999999999999999999999999988888899999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCccc
Q 012033 262 SLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFH 341 (472)
Q Consensus 262 g~l~~~~~~~~~~~k~s~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~ 341 (472)
|+++|++++++.+||+|+..++||+|||||+|||+|++++||+|+++|+++|++|+++.+++++| +|||||||+++
T Consensus 239 g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~~~~~~l~~~----~~iDD~~~~~~ 314 (403)
T TIGR00836 239 GGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSKLKKK----LKIDDPLDAFA 314 (403)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999877765 89999999999
Q ss_pred cccchhhHHHHHHHHccccccccccCCCCCCCCcccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012033 342 THAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLV 421 (472)
Q Consensus 342 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~~l~~~~ 421 (472)
+|++||+||++++|+|++++.... ..|.++++ +++|+++|++|++++++|+++.++++++++|++.
T Consensus 315 vHg~~Gi~G~i~~glfa~~~~~~~-------~~g~~~~~-------~~~~l~~Ql~g~~~~~~~s~~~~~ii~~il~~~~ 380 (403)
T TIGR00836 315 VHGVGGIWGLIATGLFAAPKVGGV-------GTGGLLGG-------NGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTI 380 (403)
T ss_pred hhhhhHHHHHHHHHHhcccccccc-------cCCccccC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999998754321 12334432 4599999999999999999999999999999999
Q ss_pred cCCCChhHhhcc-ChhhhChhhh
Q 012033 422 NLRMNADDLEIG-DDAAHGEEAY 443 (472)
Q Consensus 422 ~LRv~~e~E~~G-D~~~hg~~ay 443 (472)
+||+++|||+.| |..||||++|
T Consensus 381 ~lRv~~e~E~~GlD~~~hg~~ay 403 (403)
T TIGR00836 381 GLRVSEEEEKIGLDLAEHGEFAY 403 (403)
T ss_pred cccCCHHHHHhCCChhhhCcccC
Confidence 999999999999 9999999998
No 5
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=100.00 E-value=6.4e-102 Score=805.32 Aligned_cols=380 Identities=26% Similarity=0.480 Sum_probs=347.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCC---CCcccCcchhhh
Q 012033 28 ADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSAL---IPLMGKPDVALS 104 (472)
Q Consensus 28 ~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~---~~fiG~~~~~~~ 104 (472)
.|+.|+|+|++|| |+|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++. ++++|. ++.
T Consensus 3 ~d~~w~l~~~~LV-~~M~~Gfalle~G~vr~Kn~~n~l~k~~~~~~~~~l~w~~~Gy~lafg~~~~~~~g~~g~---f~~ 78 (404)
T TIGR03644 3 LDTFYFLISGALV-MWMAAGFAMLEAGLVRSKNTTEILTKNIALFAIACIMYLLVGYNIMYPGGGIFLGGILGS---FLL 78 (404)
T ss_pred ccHHHHHHHHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCcchh---hhh
Confidence 6999999999999 999999999999999999999999999999999999999999999999863 334432 111
Q ss_pred ccc--ccC---C-CCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeeccccc-cc
Q 012033 105 EKY--LLE---P-SGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL-EP 177 (472)
Q Consensus 105 ~~~--~~~---~-~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL-~l 177 (472)
... ..+ + ..+.++|...+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+|++||| ++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~Fq~~Fa~~a~~IvsGavaeR~~~~~~~v~~~~~~~~vY~~~ahW~W~~GwL~~l 158 (404)
T TIGR03644 79 GADNPVGDLIAGFEGDADYSSGSDFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWTWGGGWLDDL 158 (404)
T ss_pred cccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHHHhhhhhheeCchHHhhc
Confidence 110 000 1 1123467788899999999999999999999999999999999999999999999999988999 99
Q ss_pred cccccCCceehhhhHHHHHHHHHHHHcCCCCCCC-----CCCCCCcHHHHHHHHHHHHHhhhcccccccccccc-----h
Q 012033 178 YIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDR-----HNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGR-----I 247 (472)
Q Consensus 178 G~~DfaG~~vVH~~gG~~aL~~a~~lG~R~~r~~-----~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~-----~ 247 (472)
|++|||||++||++||++||+++++||||++|++ +++||||++++++|+++||+||+|||+||++..+. .
T Consensus 159 G~~DfAG~~vVH~~gG~~aL~~a~~LgpR~gr~~~~~~~~~~~~~n~~~~~lG~~iLw~gW~gFN~gs~l~~~~~~~~~~ 238 (404)
T TIGR03644 159 GFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGTFILWMGWFGFNGGSQLALSDVADANA 238 (404)
T ss_pred CchhhcCceEEecchHHHHHHHHheeccCCCCCccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhcchhhhhcccccchHH
Confidence 9999999999999999999999999999999862 25789999999999999999999999999877653 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhhhh
Q 012033 248 AALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRL 327 (472)
Q Consensus 248 ~~~a~~NT~la~a~g~l~~~~~~~~~~~k~s~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l 327 (472)
..++++||++|+++|+++|++++++++||+|+..++||+|||||+|||+|++++||+|++||+++|++|+++.++++|
T Consensus 239 ~~~a~~NT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~~~~~~-- 316 (404)
T TIGR03644 239 VARIFANTNAAAAGGAIAALLLTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIGAVGGVIVVFSIVLLDK-- 316 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred ccccccccccCccccccchhhHHHHHHHHccccccccccCCCCCCCCcccccccCCccchhHHHHHHHHHHHHHHHHHHH
Q 012033 328 VFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNA 407 (472)
Q Consensus 328 ~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~ 407 (472)
+|||||||++++|++||+||++++|+|+.+ +|++.|++|++++++|++
T Consensus 317 ---~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~-----------------------------~~l~~Ql~g~~~~~~~~~ 364 (404)
T TIGR03644 317 ---LKIDDPVGAISVHGVAGIWGTLVVPITNGD-----------------------------ASFGAQLIGAATIFAWVF 364 (404)
T ss_pred ---CCCCCCcCchHhhhHHHHHHHHHHHHhccc-----------------------------hHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999521 689999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCChhHhhcc-ChhhhChhhhcc
Q 012033 408 IVTSLICIFVSRLVNLRMNADDLEIG-DDAAHGEEAYAL 445 (472)
Q Consensus 408 ~~~~ii~~~l~~~~~LRv~~e~E~~G-D~~~hg~~ay~~ 445 (472)
+.++++++++|++.+||+++|+|++| |.+||||++|||
T Consensus 365 ~~s~~~~~il~~~~~lRv~~e~E~~GlD~~~hg~~ay~e 403 (404)
T TIGR03644 365 VTSLIVWFILKATMGIRVSEEEEYEGLDIAECGMEAYPE 403 (404)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHcCCCHHHhCcccCCC
Confidence 99999999999999999999999999 999999999986
No 6
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=100.00 E-value=4.6e-94 Score=750.83 Aligned_cols=389 Identities=37% Similarity=0.675 Sum_probs=338.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCC--CCcccCcchhhhcccc
Q 012033 31 AWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSAL--IPLMGKPDVALSEKYL 108 (472)
Q Consensus 31 ~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~--~~fiG~~~~~~~~~~~ 108 (472)
+|+++|+.+| ++|||||+++|+|.+|+||++|+++|++.++++++++|+++||+++|++++ ++++|+...... ..
T Consensus 1 ~w~l~~~~lv-~~m~~G~~~l~~G~vr~kn~~~~~~~~~~~~~~~~~~~~~~Gf~lafg~~~~~~~~~g~~~~~~~-~~- 77 (399)
T PF00909_consen 1 AWLLLCAFLV-FLMQPGFALLEAGLVRSKNAVNILYKNLIDVAVVVMIWFLFGFSLAFGKRYGFSGFIGNLGFSAF-GF- 77 (399)
T ss_dssp HHHHHHHHHH-HHHCCHHHHHHHCCS-GGGHHHHHHHHHHHHHHHHHHHHHCHHHHHHSTT-HHHHHHHHHCHHHH-HH-
T ss_pred CHHHHHHHHH-HHhhccHHHhhCCCcCchHHHHHHHHHHHHHHHHHHHHHhhhhheeecCCcccCceeeccccccc-cc-
Confidence 6999999999 999999999999999999999999999999999999999999999999973 456665221110 00
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceee-ccccc-ccccc-ccCCc
Q 012033 109 LEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIW-GGGFL-EPYII-DYAGG 185 (472)
Q Consensus 109 ~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW-~~GwL-~lG~~-DfaG~ 185 (472)
...++|...+++||++||+++++|++|+++||+|+.+|++|+++|+.++|||++||+| ++||| ++|++ |||||
T Consensus 78 ----~~~~~~~~~~~~fq~~fa~~~~~I~sgavaeR~~~~~~ii~~~l~~~~vy~~~~~w~w~~~Gwl~~~g~~~DfaG~ 153 (399)
T PF00909_consen 78 ----QWANIPQGVFFLFQLAFAAIAATIVSGAVAERIKFSAYIIFGFLWGGLVYPPLAHWVWGENGWLAQLGFLIDFAGS 153 (399)
T ss_dssp ----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCTHHHHHHHHHCHCHHHHHCCHH--TT-T
T ss_pred ----hhccccccchhhhhhccceEEEccccceeeceeeehHHHHHHHHHhhhhccccceEEEecchhhccCccCCCCccc
Confidence 0123556678999999999999999999999999999999999999999999999999 59999 99999 99999
Q ss_pred eehhhhHHHHHHHHHHHHcCCCCCC---CCCCCCCcHHHHHHHHHHHHHhhhcccccccccccchhhH-HHHHHHHHHHH
Q 012033 186 FVIHLSSGVSGFTAAYWVGPRHSRD---RHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAAL-AIVNTHLCAAT 261 (472)
Q Consensus 186 ~vVH~~gG~~aL~~a~~lG~R~~r~---~~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~-a~~NT~la~a~ 261 (472)
++||++||++||++++++|||++|+ ++++||||++++++|+++||+||+|||+||++..++.+.. +++||++|+++
T Consensus 154 ~vVH~~gG~~gL~~a~~lg~R~~~~~~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~~~~~nT~la~a~ 233 (399)
T PF00909_consen 154 GVVHLFGGVFGLAAAIVLGPRRGRFDGKPNPIPPHSPPLAMLGTLLLWFGWFGFNAGSALAANGRAWLRAAVNTLLAAAA 233 (399)
T ss_dssp TTTHHHHHHHHHHHHHHH--CTTTTGTTTSS--HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSHHHHH-HHHHHHHHHHH
T ss_pred eeeehhhhHHHHhhheeeCCCCCcccccccCCCCCcHHHhhhhHHHHHHHhcccccccccccCCccchhhhhhhhhhHHH
Confidence 9999999999999999999999996 6788999999999999999999999999999998887776 99999999999
Q ss_pred HHHHHHHHHHHHhcCCChhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCccc
Q 012033 262 SLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFH 341 (472)
Q Consensus 262 g~l~~~~~~~~~~~k~s~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~ 341 (472)
|+++|++++++.+||+|+..++||+|||||||||+|++++||+|+++|+++|.+|+++++++++| +|||||||+++
T Consensus 234 g~l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~----~~iDD~~~~~~ 309 (399)
T PF00909_consen 234 GGLTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKR----LKIDDPVGAFA 309 (399)
T ss_dssp HHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHH----HTS-HTTGHHH
T ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccce----eEeccccceEe
Confidence 99999999999999999999999999999999999999999999999999999999999866665 89999999999
Q ss_pred cccchhhHHHHHHHHccccccccccCCCCCCCCcccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012033 342 THAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLV 421 (472)
Q Consensus 342 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~~l~~~~ 421 (472)
+|++||+||++++|+|+.++... .+...|++|+ +.+|++.|++++++++.|++++++++++++|++.
T Consensus 310 vHg~~Gi~G~i~~glfa~~~~~~-----~~~~~~~~~~--------~~~~l~~Ql~g~~~~~~~~~~~s~i~~~~l~~~~ 376 (399)
T PF00909_consen 310 VHGVGGIWGTILTGLFASPEVNY-----SDGYGGLFYG--------NGRQLGIQLLGIVVILAWSFVVSYIIFKILKKFG 376 (399)
T ss_dssp HCHHHHHHHHHHHHHHCCCHHCS-----S-SSTTHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeccHHHHHHHHHHHhcccccc-----ccccccccCC--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999987541 1223456664 3489999999999999999999999999999999
Q ss_pred cCCCChhHhhcc-ChhhhChhhh
Q 012033 422 NLRMNADDLEIG-DDAAHGEEAY 443 (472)
Q Consensus 422 ~LRv~~e~E~~G-D~~~hg~~ay 443 (472)
+||+++|+|+.| |..||||+||
T Consensus 377 ~LRv~~~~E~~GlD~~~hg~~aY 399 (399)
T PF00909_consen 377 GLRVSEEDERVGLDLSEHGEEAY 399 (399)
T ss_dssp -SB--HHHHHH-HHHHHHS--SB
T ss_pred ccCCCHHHHhhCCCHHHhCcCcC
Confidence 999999999999 9999999998
No 7
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=3.6e-45 Score=364.05 Aligned_cols=382 Identities=21% Similarity=0.289 Sum_probs=303.8
Q ss_pred HHHHHHHHHHHHHHhhhccccch----------hHHHHHHHHHHHHHHH-HHHHHHHhhhhhhcCCCCCcccCcchhh--
Q 012033 37 TTMVCLQSVPGLVILYGSMVKKK----------WAVNSAFMAFYAFAVV-LVCWVLWAHQMAFGSALIPLMGKPDVAL-- 103 (472)
Q Consensus 37 ~~lV~~~m~~GfalleaG~vr~k----------n~~~~l~~~~~~~~v~-~i~w~~~Gy~lafg~~~~~fiG~~~~~~-- 103 (472)
--|+++++|.-|+.+.+=.||+. +..|-+...+..++.+ ++++..+||.++|-+++ +|.....+.+
T Consensus 13 lpl~~l~lq~~~ivLF~~fv~Yd~~al~~~t~~~~~~~~~~~Yp~fQDvhvMifiGfGFLmtflrRy-gfSsV~fnllla 91 (442)
T KOG3796|consen 13 LPLWALLLQAAFIVLFALFVHYDADALEWDTKRYDQKGLVASYPLFQDVHVMIFIGFGFLMTFLRRY-GFSSVGFNLLLA 91 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhccccccceeehhhhhHHHHHHHHHHc-cchHHHHHHHHH
Confidence 34555778889999988888884 2345566678888888 88999999999999876 4554443322
Q ss_pred ---------hcccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeecccc
Q 012033 104 ---------SEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGF 174 (472)
Q Consensus 104 ---------~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~Gw 174 (472)
.+++ +...+++++...++-+..+.||+.++.|..|++.+|+++.++++++ ++++.++-.+.|-+-+
T Consensus 92 A~~vQWaiL~~G~-~~~~~~gk~~i~le~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~-~fEv~~~~~~e~v~~n--- 166 (442)
T KOG3796|consen 92 ALGVQWAILLDGF-LSQFPGGKFVIGLESIILADFSAASVLISMGAVLGKVSPAQLLIMA-LFEVTAFGINEMVISN--- 166 (442)
T ss_pred HHHHHHHHHHHHH-HHhCCCCeEEEEeHHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHH-HHHHHHHHHHHHHHHH---
Confidence 1221 1222345666667788999999999999999999999999999999 5577777764332211
Q ss_pred ccccccccCCceehhhhHHHHHHHHHHHHcCCCCCC---CCCCCCCcHHHHHHHHHHHHHhhhcccccccccccchhhHH
Q 012033 175 LEPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRD---RHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALA 251 (472)
Q Consensus 175 L~lG~~DfaG~~vVH~~gG~~aL~~a~~lG~R~~r~---~~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a 251 (472)
.+++-|-+|++.||.+|+++||++++++.|+..+. ++.-..|++.++++|+++||+.||+||+.-+. .++.+.||
T Consensus 167 -~~~v~d~g~smtih~FgAYFGLavA~~l~k~~~~~~~~~~gs~y~sdLfAMIGtlFLWmfWPSFNsal~~-~~~~r~rA 244 (442)
T KOG3796|consen 167 -IFNVNDHGGSMTIHAFGAYFGLAVAWCLYKPNLEGTTENEGSAYHSDLFAMIGTLFLWMFWPSFNSALAR-SGDARHRA 244 (442)
T ss_pred -hccccccCCceEEEehhhhhhhhHhhhccCccccccccccCceecchHHHHHHHHHHHHhccccchhhhc-CchhhHHH
Confidence 77999999999999999999999999998876553 34556799999999999999999999996433 24567999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--hcCCChhhhhhhhhhcceeecCCCC-ccChhHHHHHHhhhhhHHHHHHHHHhhhhc
Q 012033 252 IVNTHLCAATSLLVWVSLDMIV--YKKSSVIGAVQGMITGLVCITPGAG-IVEPWGALLMGAMSGSIPWYTMMVLHRRLV 328 (472)
Q Consensus 252 ~~NT~la~a~g~l~~~~~~~~~--~~k~s~~~~~nG~lAGLVaita~a~-~v~p~~A~iiG~iag~i~~~~~~~l~~~l~ 328 (472)
++||++|.|++.+|++.++-+. +||.|++.+.|..|||.|||..+|+ ..+||.|++||++||++++.+++++.++++
T Consensus 245 i~NTy~slAa~tvTtf~~Sslv~~~gkldMvhIqnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG~vSvlG~kyltp~l~ 324 (442)
T KOG3796|consen 245 IFNTYLSLAASTVTTFAVSSLVHPQGKLDMVHIQNATLAGGVAVGTSANLILSPYGAMIIGLIAGLVSVLGYKYLTPFLE 324 (442)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCccceEEeecchhcCceeeccchhcccCcHHHHHHHHHHHHHhhccceeechhhc
Confidence 9999999999999999999886 5899999999999999999999999 899999999999999999999999999999
Q ss_pred cccccccccCccccccchhhHHHHHHHHccccccccccCCCCCCCCcc--cc--cccCCccchhHHHHHHHHHHHHHHHH
Q 012033 329 FFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGL--FY--SLFNGQIEFGFKQFGYQIVGTAFITA 404 (472)
Q Consensus 329 ~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl--~~--g~~~g~~~~~~~ql~~Ql~g~~~~~~ 404 (472)
.++||+|+|++.+.||++|++|.++...++.-.... .|+ +|+ +| .+.|+.. ..-.|...|+.|+.+++.
T Consensus 325 ~~l~i~dtcgv~nlhgmpg~l~~~~~i~~a~~~t~e-~yg-----~~l~~ifp~~~gng~~-~~~sQa~~Ql~gl~~~l~ 397 (442)
T KOG3796|consen 325 RKLGIHDTCGVHNLHGMPGLLGGIASIVFAVLATPE-SYG-----KGLYHIFPMIGGNGHG-MATSQALYQLFGLLVTLV 397 (442)
T ss_pred ccccccccccccccccchHHHHHHHHHHHHhhcchh-hcc-----cccccccceecCCCcc-chhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877321100 010 011 00 1112211 234799999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHhhccC
Q 012033 405 WNAIVTSLICIFVSRLVNLRMNADDLEIGD 434 (472)
Q Consensus 405 ~s~~~~~ii~~~l~~~~~LRv~~e~E~~GD 434 (472)
-+.+.+++...+||.. .+|.++|+|...|
T Consensus 398 ~A~~gGlLtGllLkl~-~w~qp~d~~~~~D 426 (442)
T KOG3796|consen 398 IALVGGLLTGLLLKLK-IWDQPSDDEYYDD 426 (442)
T ss_pred HHHHhhhhhhheeecc-ccCCCChhhhccc
Confidence 9999999999988864 5677777665443
No 8
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=83.36 E-value=17 Score=38.54 Aligned_cols=141 Identities=14% Similarity=0.090 Sum_probs=91.3
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHH---HHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcccCc
Q 012033 23 WWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVN---SAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKP 99 (472)
Q Consensus 23 ~~~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~---~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fiG~~ 99 (472)
+...+-|..+.++.+.++ ++ |.--|.+|.....|... +++..+++.+.+.+.|.++.|-.. ++
T Consensus 183 ~~~~~~s~~~~~lG~~lL-w~---gW~gFN~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~~~~~~-gk--------- 248 (399)
T PF00909_consen 183 NPIPPHSPPLAMLGTLLL-WF---GWFGFNAGSALAANGRAWLRAAVNTLLAAAAGGLTWLLISYLLS-GK--------- 248 (399)
T ss_dssp SS--HCHHHHHHHHHHHH-HH---HHHHHHHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC-SS---------
T ss_pred cCCCCCcHHHhhhhHHHH-HH---HhcccccccccccCCccchhhhhhhhhhHHHHHHHHHHhhhccc-cc---------
Confidence 344566778888888766 54 45556777776665554 457778888888899977755433 11
Q ss_pred chhhhcccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeeccccc--cc
Q 012033 100 DVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL--EP 177 (472)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL--~l 177 (472)
. ....+.+.+.|... ...+-+.=+++.+-++..++ ++.++..... |+ ++
T Consensus 249 -----------------~--~~~~~~nG~laGlV---aita~~~~v~p~~A~~iG~i-ag~i~~~~~~------~l~~~~ 299 (399)
T PF00909_consen 249 -----------------W--SMVGICNGALAGLV---AITAGAGYVTPWGALLIGAI-AGLISYFGVS------WLLKRL 299 (399)
T ss_dssp ---------------------HHHHHHHHHHHHH---HHTTTTTTS-HHHHHHHHHH-HHHHHHHHHH------HHHHHH
T ss_pred -----------------c--chhhhhhhhhhhhh---heecccCCCcHHHHHHhhhh-Hhhhhhhhee------ccccee
Confidence 0 01223444444333 33555577888888887744 6566555433 45 88
Q ss_pred cccccCCceehhhhHHHHHHHHHHHHcCC
Q 012033 178 YIIDYAGGFVIHLSSGVSGFTAAYWVGPR 206 (472)
Q Consensus 178 G~~DfaG~~vVH~~gG~~aL~~a~~lG~R 206 (472)
+..|.-|.-.||..+|+.|...+-+...+
T Consensus 300 ~iDD~~~~~~vHg~~Gi~G~i~~glfa~~ 328 (399)
T PF00909_consen 300 KIDDPVGAFAVHGVGGIWGTILTGLFASP 328 (399)
T ss_dssp TS-HTTGHHHHCHHHHHHHHHHHHHHCCC
T ss_pred EeccccceEeeeeccHHHHHHHHHHHhcc
Confidence 99999999999999999999998776544
No 9
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=75.44 E-value=22 Score=34.05 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=17.0
Q ss_pred CceehhhhHHHHHHHHHHHHcCCC
Q 012033 184 GGFVIHLSSGVSGFTAAYWVGPRH 207 (472)
Q Consensus 184 G~~vVH~~gG~~aL~~a~~lG~R~ 207 (472)
++..+|..|.. ..++++||+.
T Consensus 61 ~g~s~Hllg~~---l~~l~lGp~~ 81 (205)
T PF01891_consen 61 GGLSVHLLGLT---LLTLMLGPWL 81 (205)
T ss_pred CCchHHHhHHH---HHHHHHhHHH
Confidence 67999999886 6677889873
No 10
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=62.21 E-value=36 Score=28.88 Aligned_cols=72 Identities=18% Similarity=0.101 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHh-----cCC-ChhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhhhhcccccccc
Q 012033 262 SLLVWVSLDMIVY-----KKS-SVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDD 335 (472)
Q Consensus 262 g~l~~~~~~~~~~-----~k~-s~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD 335 (472)
+.+++.+++.+.+ .|| ..+.+.-|++.|+++.--. +-.+++..+.-|.++|+........+.||-+ |.+=||
T Consensus 15 ~ii~~~lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~-~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~-~~~e~~ 92 (93)
T PF06946_consen 15 SIITPALVQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLT-GDGNLALMAWAGGLAGLAATGLFEQFTNRSK-KYGEDD 92 (93)
T ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcC-CCccHHHHHHHHHHhhhhhhhHHHHHHhhhh-hcCcCC
Confidence 4445555555442 344 3467788888888764222 1236677777799999888877777777633 344454
No 11
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=61.61 E-value=1.8e+02 Score=31.15 Aligned_cols=137 Identities=14% Similarity=-0.014 Sum_probs=83.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhhhccc------cc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcc
Q 012033 24 WNNKADNAWQLTATTMVCLQSVPGLVILYGSMV------KK-KWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLM 96 (472)
Q Consensus 24 ~~~~~d~~w~l~~~~lV~~~m~~GfalleaG~v------r~-kn~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fi 96 (472)
.+.+-|..+.++-+.+. ++--+|| .+|.. ++ +.+..+.+...++.+.+.+.|.++-|.. +++..
T Consensus 199 ~~~~~n~~~~~lG~~iL-w~gW~gF---N~gs~l~~~~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~-~gk~~---- 269 (404)
T TIGR03644 199 PIPGSNLPLATLGTFIL-WMGWFGF---NGGSQLALSDVADANAVARIFANTNAAAAGGAIAALLLTKLL-FGKAD---- 269 (404)
T ss_pred CCCCCCHHHHHHHHHHH-HHHHHhh---cchhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC----
Confidence 34456777888877766 6655554 44442 22 2344567777888888899998776532 22210
Q ss_pred cCcchhhhcccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeeccccc-
Q 012033 97 GKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL- 175 (472)
Q Consensus 97 G~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL- 175 (472)
...+.+..-|.. ...-+-+.=.++..-++... .+++++..... ++
T Consensus 270 ------------------------~~~~~nG~LAGL---VaITa~~~~v~p~~A~iiG~-iag~v~~~~~~------~~~ 315 (404)
T TIGR03644 270 ------------------------LTMVLNGALAGL---VAITAEPLTPSPLAATLIGA-VGGVIVVFSIV------LLD 315 (404)
T ss_pred ------------------------HHHHHHHHHhhh---hhhccccCCCCHHHHHHHHH-HHHHHHHHHHH------HHH
Confidence 111222222222 22223346667777777774 45566654332 45
Q ss_pred cccccccCCceehhhhHHHHHHHHHHHH
Q 012033 176 EPYIIDYAGGFVIHLSSGVSGFTAAYWV 203 (472)
Q Consensus 176 ~lG~~DfaG~~vVH~~gG~~aL~~a~~l 203 (472)
++++-|--+...||..+|..|..++=+.
T Consensus 316 ~~~iDD~~~~~~vHg~~Gi~G~i~~glf 343 (404)
T TIGR03644 316 KLKIDDPVGAISVHGVAGIWGTLVVPIT 343 (404)
T ss_pred hCCCCCCcCchHhhhHHHHHHHHHHHHh
Confidence 7899999999999999999888877665
No 12
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=54.49 E-value=55 Score=36.53 Aligned_cols=107 Identities=17% Similarity=0.324 Sum_probs=55.0
Q ss_pred CcHHHHHHHHHHHHHhhh-cccccccccccchhhHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChhhhhhhhhhcceeec
Q 012033 217 NNIIHMLGGAGFLWLGWT-GFNGGSPLVAGRIAALAIVNTH-LCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCIT 294 (472)
Q Consensus 217 hs~~~~~lG~~lLw~GW~-gFN~gs~~~~~~~~~~a~~NT~-la~a~g~l~~~~~~~~~~~k~s~~~~~nG~lAGLVait 294 (472)
|=+|+++.|.+++=++.. |.+. .. +...-...+++. =..+.+.+.-++--|+-+---|--.+.-|.+.|+++..
T Consensus 236 ~mlP~vv~gGil~ai~~~~g~~~---~~-~~~~~~~~~~~~gg~~~~~lmvpvla~yia~sia~rpglapg~i~g~~a~~ 311 (563)
T PRK10712 236 YMLPMVVAGGLCIALSFAFGIEA---FK-EPGTLAAALMQIGGGSAFALMVPVLAGYIAFSIADRPGLTPGLIGGMLAVS 311 (563)
T ss_pred HHHHHHHHhHHHHHHHHHhCccc---cC-CccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHhc
Confidence 556888888888877643 2211 11 111111223322 11233444444444443322233356889999999888
Q ss_pred CCCCccChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccC
Q 012033 295 PGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLG 338 (472)
Q Consensus 295 a~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~ 338 (472)
.++|++ ++++.|.++|-+ .++++|+ .|+-+.++
T Consensus 312 ~~~GFl---G~Ilag~lagyv----~~~l~K~----~~lP~~l~ 344 (563)
T PRK10712 312 TGSGFI---GGIIAGFLAGYV----AKLISTK----LKLPQSME 344 (563)
T ss_pred CCchHH---HHHHHHHHHHHH----HHHHHHh----ccCcHHHH
Confidence 776654 555555555533 3444442 56666555
No 13
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=50.79 E-value=20 Score=36.35 Aligned_cols=82 Identities=13% Similarity=0.009 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHH-hc----CCChhhhhhhhhhcceeecCCCC--------ccChhHHHHHHhhhhhHHHHHHHHHhhhhc
Q 012033 262 SLLVWVSLDMIV-YK----KSSVIGAVQGMITGLVCITPGAG--------IVEPWGALLMGAMSGSIPWYTMMVLHRRLV 328 (472)
Q Consensus 262 g~l~~~~~~~~~-~~----k~s~~~~~nG~lAGLVaita~a~--------~v~p~~A~iiG~iag~i~~~~~~~l~~~l~ 328 (472)
+=..+++..+.. ++ |.|+.-...|.++|+++.+-.+. .++++..+++|++.++...++- ..+..+|
T Consensus 164 sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GD-L~ES~lK 242 (285)
T PRK11624 164 ADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAPLDVAPVTLLICSIVAALASVLGD-LTESMFK 242 (285)
T ss_pred HHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhH-HHHHHHh
Confidence 334444444443 23 34777777787777765543222 1356777888888888877764 3455567
Q ss_pred cccccccccCcccccc
Q 012033 329 FFQSVDDTLGVFHTHA 344 (472)
Q Consensus 329 ~~l~IDD~~~v~~vHg 344 (472)
++.++.|.-..+|=||
T Consensus 243 R~~gVKDSG~llPGHG 258 (285)
T PRK11624 243 REAGIKDSGHLIPGHG 258 (285)
T ss_pred hccCCCCCcCcCCCcC
Confidence 7799999877777776
No 14
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=48.68 E-value=50 Score=31.63 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHHhhhcccccccc--cccchhhHHHHHHHHHHHHHHHHHHHHHHHHh------cCCChhh-hh--hh-
Q 012033 218 NIIHMLGGAGFLWLGWTGFNGGSPL--VAGRIAALAIVNTHLCAATSLLVWVSLDMIVY------KKSSVIG-AV--QG- 285 (472)
Q Consensus 218 s~~~~~lG~~lLw~GW~gFN~gs~~--~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~------~k~s~~~-~~--nG- 285 (472)
+.....+-..+++++.+.+-.|-.. +.+.......+++.+.+..+++....+.+... +|.+... +. -+
T Consensus 77 ~~~~~~ld~~L~~~~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~ 156 (206)
T PF06570_consen 77 NPWLMALDNSLLFFGIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLA 156 (206)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 4556677777777777766665432 12122222566667666666665554443332 2322211 11 11
Q ss_pred --hhhcce---eecC-C-CCccChhHHHHHHhhhhhHHHHHHHHHhhhhcccccccc
Q 012033 286 --MITGLV---CITP-G-AGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDD 335 (472)
Q Consensus 286 --~lAGLV---aita-~-a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD 335 (472)
..-+++ +.-| . ...++||..+++|+++-. ..++++|| ++|-.
T Consensus 157 ~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~----~~~~lkkk----~~i~~ 205 (206)
T PF06570_consen 157 MVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFA----LRFYLKKK----YNITG 205 (206)
T ss_pred HHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHH----HHHHHHHH----hCCCC
Confidence 111111 1112 2 237888988888866554 44566665 66643
No 15
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=46.43 E-value=13 Score=36.11 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=46.1
Q ss_pred CChhhhhhhhhhcceeecCCCCc---------cChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCcccccc
Q 012033 277 SSVIGAVQGMITGLVCITPGAGI---------VEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHA 344 (472)
Q Consensus 277 ~s~~~~~nG~lAGLVaita~a~~---------v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg 344 (472)
.+......|.++|.++....+-. .+++.+++++++++++..++-. .+..+|+..+|-|.-+.+|=||
T Consensus 161 ~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gdl-~~S~~KR~~~iKD~g~lipghG 236 (259)
T PF01148_consen 161 ISPKKTWEGSIAGFISSFIISFLLLYYLSSFFLSWWQAILISLLASIVEAFGDL-FESAIKRDAGIKDSGNLIPGHG 236 (259)
T ss_pred CCCCCCHHHHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccccccccCcC
Confidence 34455566666666554333221 5789999999999998887753 3444666699999888888776
No 16
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=42.72 E-value=1.9e+02 Score=25.96 Aligned_cols=85 Identities=15% Similarity=0.120 Sum_probs=55.1
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCccccccchhhHHHHHHHHccccccccccCCCCCCCCccccccc
Q 012033 302 PWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLF 381 (472)
Q Consensus 302 p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~g~~ 381 (472)
|+.|-.+-...|.+.......+.++ .+...--++=..+..+|+.|.+.+..-
T Consensus 30 ~~~as~i~~~~G~i~~~i~~~~~~~----~~~~~~~~~p~w~~lGG~lG~~~V~~~------------------------ 81 (138)
T PF04657_consen 30 PLVASFISFGVGFILLLIILLITGR----PSLASLSSVPWWAYLGGLLGVFFVLSN------------------------ 81 (138)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcc----cccchhccCChHHhccHHHHHHHHHHH------------------------
Confidence 7777777777777766666655543 133333355566778888888876532
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012033 382 NGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNL 423 (472)
Q Consensus 382 ~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~~l~~~~~L 423 (472)
-..++-+|...........=.+...++|+++.+
T Consensus 82 ---------~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~f 114 (138)
T PF04657_consen 82 ---------IILVPRLGAALTTILIVAGQLIASLLIDHFGLF 114 (138)
T ss_pred ---------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 123456666777777777777777788887544
No 17
>PRK08319 cobalt transport protein CbiM; Validated
Probab=42.09 E-value=2.3e+02 Score=27.60 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=20.5
Q ss_pred cc-cccccccCCceehhhhHHHHHHHHHHHHcCCC
Q 012033 174 FL-EPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRH 207 (472)
Q Consensus 174 wL-~lG~~DfaG~~vVH~~gG~~aL~~a~~lG~R~ 207 (472)
|+ +.+. -|+..+|..|+. ..++++|||.
T Consensus 56 ~~i~~pi---~~G~s~Hllg~~---l~~lllGp~~ 84 (224)
T PRK08319 56 SALKIPS---VTGSCSHPTGTG---LGAILFGPAV 84 (224)
T ss_pred HHhcCCC---CCCcchhHhHHH---HHHHHHhHHH
Confidence 44 5553 367899999986 6677889984
No 18
>PF14074 DUF4257: Protein of unknown function (DUF4257)
Probab=39.89 E-value=12 Score=31.00 Aligned_cols=58 Identities=5% Similarity=-0.008 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-------------hhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhh
Q 012033 257 LCAATSLLVWVSLDMIVYKKSS-------------VIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGS 314 (472)
Q Consensus 257 la~a~g~l~~~~~~~~~~~k~s-------------~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~ 314 (472)
+|...|+++.++-++..+||.. ..++.-|++|++.++|...+.-+.+.-+.+.++||.
T Consensus 4 iA~liGgi~G~i~H~~~~g~i~~Pr~~k~~~~lGF~~d~~vG~~AaiL~v~~~~~~~~~~~iv~vSilaG~ 74 (82)
T PF14074_consen 4 IAGLIGGIMGLIGHYRKNGVIKKPRRTKQFFYLGFLEDMFVGSLAAILAVTVSSDPESLRVIVKVSILAGI 74 (82)
T ss_pred EeeeHhhHHHHHHHHhcCCEEecCccccceEEecHHHHHHHHHHHHHHhheeccCchhhhhhhhhhhhhhc
Confidence 4566788888888854444321 357788999999999888888888888888888774
No 19
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=39.74 E-value=5e+02 Score=27.77 Aligned_cols=140 Identities=13% Similarity=0.041 Sum_probs=83.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhccccch--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcccCcchh
Q 012033 25 NNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKK--WAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVA 102 (472)
Q Consensus 25 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~k--n~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fiG~~~~~ 102 (472)
..+.+..+.++.+.+. ++ |..-|.+|....- .+..+.+...++.+.+.+.|+++-|.. .++-.
T Consensus 191 ~~~~n~~~~~lGt~lL-w~---gW~gFN~Gs~~~~~~~~~~a~~nT~lA~a~g~l~~~~~~~~~-~gk~~---------- 255 (403)
T TIGR00836 191 IRPHNVPLVVLGTFIL-WF---GWFGFNAGSALAANGTAAYAAVNTNLAAAAGGLTWLLIDWLK-HGKPT---------- 255 (403)
T ss_pred CCCCCHHHHHHHHHHH-HH---HHhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC----------
Confidence 3445677788777666 55 4555566665433 445677788888888899998776532 22100
Q ss_pred hhcccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeeccccc-cccccc
Q 012033 103 LSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL-EPYIID 181 (472)
Q Consensus 103 ~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL-~lG~~D 181 (472)
+..+.+ .+.+-.....+-++=.++..-++..++ +++++.....+ .. ++++.|
T Consensus 256 ------------------~~~~~n---G~LAGLVaita~a~~v~p~~A~viG~i-ag~~~~~~~~~-----l~~~~~iDD 308 (403)
T TIGR00836 256 ------------------LLGACN---GILAGLVAITPGCGVVTPWGAIIIGLV-AGVLCYLAVSK-----LKKKLKIDD 308 (403)
T ss_pred ------------------HHHHHh---hhhhhheeecCCCCCCCHHHHHHHHHH-HHHHHHHHHHH-----HHHHcCCCC
Confidence 000111 112222222333355666666666633 44444432211 12 678999
Q ss_pred cCCceehhhhHHHHHHHHHHHHcCC
Q 012033 182 YAGGFVIHLSSGVSGFTAAYWVGPR 206 (472)
Q Consensus 182 faG~~vVH~~gG~~aL~~a~~lG~R 206 (472)
.-+...||..+|+.|....-++.+.
T Consensus 309 ~~~~~~vHg~~Gi~G~i~~glfa~~ 333 (403)
T TIGR00836 309 PLDAFAVHGVGGIWGLIATGLFAAP 333 (403)
T ss_pred CcccchhhhhhHHHHHHHHHHhccc
Confidence 9999999999999998888777643
No 20
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=39.06 E-value=4.6e+02 Score=27.17 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=16.1
Q ss_pred CceehhhhHHHHHHHHHHHHcCCC
Q 012033 184 GGFVIHLSSGVSGFTAAYWVGPRH 207 (472)
Q Consensus 184 G~~vVH~~gG~~aL~~a~~lG~R~ 207 (472)
++..+|.+++. ..++++||+.
T Consensus 62 ~G~s~Hllg~~---L~alllGP~~ 82 (322)
T PRK07331 62 GGTTGHAVGGT---LIAILLGPWA 82 (322)
T ss_pred CCcchhHHHHH---HHHHHHhHHH
Confidence 45788999876 6677889884
No 21
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=37.73 E-value=1.2e+02 Score=27.60 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=27.5
Q ss_pred HHhhhhhccccceeeccccccccccccCCceehhhhHHHHHHHHHHH
Q 012033 156 LWLTFSYTIGAFTIWGGGFLEPYIIDYAGGFVIHLSSGVSGFTAAYW 202 (472)
Q Consensus 156 l~~~~vY~~~ahWvW~~GwL~lG~~DfaG~~vVH~~gG~~aL~~a~~ 202 (472)
+...++|-...+|.=+ +. |-+|....-+++|.+.+++.++
T Consensus 16 ~~~~~vY~~~t~~~~~------~~-E~~Gt~aL~ls~~l~~mig~yl 55 (137)
T PF12270_consen 16 LVVAVVYGFWTKWSGD------GG-EWVGTVALVLSGGLALMIGFYL 55 (137)
T ss_pred HHHHHHHHHHHhccCC------CC-CcchHHHHHHHHHHHHHHHHHH
Confidence 3455677665554321 11 8999999999999888888754
No 22
>PLN02594 phosphatidate cytidylyltransferase
Probab=36.21 E-value=15 Score=38.24 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=34.0
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCcccccc
Q 012033 302 PWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHA 344 (472)
Q Consensus 302 p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg 344 (472)
.+.++++|++++++..++-. .+.-+|+..||-|--+.+|=||
T Consensus 235 ~~h~l~l~l~aSl~a~fGdl-faS~~KR~~~IKDfG~~IPGHG 276 (342)
T PLN02594 235 QWHALSLGLFASIIAPFGGF-FASGFKRAFKIKDFGDSIPGHG 276 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHccCCCcccCccCCCc
Confidence 57899999999999998854 3334666799999888888887
No 23
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=36.01 E-value=58 Score=27.26 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHhhcc
Q 012033 390 KQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIG 433 (472)
Q Consensus 390 ~ql~~Ql~g~~~~~~~s~~~~~ii~~~l~~~~~LRv~~e~E~~G 433 (472)
..+..+.+++.-+++|+.+++.+..+.+..+ |.++++|..|
T Consensus 47 ~lL~a~fvA~~qi~VYaGai~vLflF~iml~---~~~~~~~~~~ 87 (88)
T PRK06433 47 VMLNAEFLAAVQVLVYVGAVLILITFAVMLT---KGEEGEESRG 87 (88)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CcccccCCCC
Confidence 5566789999999999999999988888865 3444444443
No 24
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=35.97 E-value=1.1e+02 Score=32.29 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=61.8
Q ss_pred CccChhHHHHHHhhhhhHHHHHHHHHhhhhccc-----------------------cccccccCccccccchhhHHHHHH
Q 012033 298 GIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFF-----------------------QSVDDTLGVFHTHAVAGILGGLLS 354 (472)
Q Consensus 298 ~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~-----------------------l~IDD~~~v~~vHg~~Gi~G~i~~ 354 (472)
+.+.|..+..++..-..+-......+.||...+ +.+.||..+++...++|.+|..+.
T Consensus 211 g~~~~~~a~~~a~mvPPlg~~lat~l~kk~f~k~er~~a~sA~isgl~GITEpAIPFgv~~p~r~i~a~~iGsaVgGal~ 290 (359)
T PRK10478 211 GVYTVVAIAAVAICVPPLGMGLATLIGRKNFSAEERETGKAALVMGCVGVTEGAIPFAAADPLRVIPSIMVGSVCGAVTA 290 (359)
T ss_pred CCchHHHHHHHHhccchHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 466777776666555554444344444432111 457899999999999999999999
Q ss_pred HHccccccccccCCCCCCCCcccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012033 355 GLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSR 419 (472)
Q Consensus 355 glfa~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~~l~~ 419 (472)
++|..+... + ..|++ . +-.+ .+....++.+.-++++++++..++|+
T Consensus 291 ~~~gv~~~a-------p-~gGi~-~---------ip~~-~~~l~~iiailig~vvtavl~~~~k~ 336 (359)
T PRK10478 291 ALFGAQCYA-------G-WGGLI-V---------LPVV-DGKLGYIAAVAVGAVVTAVCVNVLKS 336 (359)
T ss_pred HHhCCcccc-------c-cchHH-H---------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999765321 1 22332 1 0111 13445555555566667776666665
No 25
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=35.36 E-value=4.4e+02 Score=25.94 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=17.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhh
Q 012033 304 GALLMGAMSGSIPWYTMMVLHRR 326 (472)
Q Consensus 304 ~A~iiG~iag~i~~~~~~~l~~~ 326 (472)
...++|++=|++..+...+++|+
T Consensus 190 h~~i~~i~Eg~iT~~~~~~l~~~ 212 (230)
T PRK11909 190 HLTVAGIVEAIVTGLVVYYLQKA 212 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445999999988888888773
No 26
>PRK10457 hypothetical protein; Provisional
Probab=34.52 E-value=74 Score=26.32 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=25.0
Q ss_pred hhhhhhhccee--ecCCCCccChhHHHHHHhhhhhHHHHHH
Q 012033 282 AVQGMITGLVC--ITPGAGIVEPWGALLMGAMSGSIPWYTM 320 (472)
Q Consensus 282 ~~nG~lAGLVa--ita~a~~v~p~~A~iiG~iag~i~~~~~ 320 (472)
+.-|.++|.+| +.|+-+-...+..+++|++++++-.+..
T Consensus 7 iiiG~iaG~lA~~i~pg~~~~G~~~tiilGiiGA~iGg~l~ 47 (82)
T PRK10457 7 IIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWIS 47 (82)
T ss_pred HHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 34555666655 5565555677788888888887755443
No 27
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=34.43 E-value=21 Score=35.91 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=38.3
Q ss_pred hhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhhhhcccccccc
Q 012033 286 MITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDD 335 (472)
Q Consensus 286 ~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD 335 (472)
.+.|-|+.+.-+.=++||-|.+++++||.+.=...-+++.| .||+|
T Consensus 42 pLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k----~kI~~ 87 (293)
T COG4120 42 PLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVK----FKILT 87 (293)
T ss_pred cchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh----ccHHH
Confidence 35666777777777899999999999999988888888876 88887
No 28
>PRK10263 DNA translocase FtsK; Provisional
Probab=32.87 E-value=2.4e+02 Score=34.73 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=12.5
Q ss_pred ccchhhHHHHHHHHcc
Q 012033 343 HAVAGILGGLLSGLLA 358 (472)
Q Consensus 343 Hg~~Gi~G~i~~glfa 358 (472)
+..||++|.++..++.
T Consensus 140 ~~gGGIIG~lLs~lL~ 155 (1355)
T PRK10263 140 FASGGVIGSLLSTTLQ 155 (1355)
T ss_pred ccccchHHHHHHHHHH
Confidence 4679999999877654
No 29
>PRK10666 ammonium transporter; Provisional
Probab=32.35 E-value=6.7e+02 Score=27.08 Aligned_cols=137 Identities=15% Similarity=0.045 Sum_probs=78.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhccccchh--HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcccCcchhh
Q 012033 26 NKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKW--AVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVAL 103 (472)
Q Consensus 26 ~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn--~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fiG~~~~~~ 103 (472)
.+-|....++.+.+. ++ |..-|++|.....| +..+.+..+++.+.+.+.|.+.-|- -.++..
T Consensus 216 ~~hn~~~~~lGt~lL-w~---GW~gFN~Gs~~~~~~~a~~a~~nT~la~a~g~l~~~~~~~~-~~gk~~----------- 279 (428)
T PRK10666 216 KPHNLPMVFTGTAIL-YI---GWFGFNAGSAGAANEIAALAFVNTVVATAAAILGWVFGEWA-LRGKPS----------- 279 (428)
T ss_pred CCCCHHHHHHHHHHH-HH---HHHhccchhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCC-----------
Confidence 344555566665544 44 56666777775443 4556677778888888888766443 111100
Q ss_pred hcccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeeccccc--cccccc
Q 012033 104 SEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL--EPYIID 181 (472)
Q Consensus 104 ~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL--~lG~~D 181 (472)
...+.+.. .+-.....+-++=+++..-++..++ .++++....+ +| ++++.|
T Consensus 280 -----------------~~~~~nG~---LaGLVaITa~a~~v~p~~A~iiG~v-ag~v~~~~~~------~l~~~~~iDD 332 (428)
T PRK10666 280 -----------------LLGACSGA---IAGLVGVTPACGYVGVGGALIIGVV-AGLAGLWGVT------MLKRWLRVDD 332 (428)
T ss_pred -----------------HHHHHHHH---hhhhhhcccccccCCHHHHHHHHHH-HHHHHHHHHH------HHHhcCCCCC
Confidence 00111111 1111112233455666666666633 5555543221 24 368999
Q ss_pred cCCceehhhhHHHHHHHHHHHHcC
Q 012033 182 YAGGFVIHLSSGVSGFTAAYWVGP 205 (472)
Q Consensus 182 faG~~vVH~~gG~~aL~~a~~lG~ 205 (472)
--+...||..+|+.|....-+...
T Consensus 333 ~~~a~~vHgv~Gi~G~l~~glfa~ 356 (428)
T PRK10666 333 PCDVFGVHGVCGIVGCILTGIFAA 356 (428)
T ss_pred CcCccHhhhHhHHHHHHHHHHhhc
Confidence 999999999999999888766643
No 30
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=32.29 E-value=5.5e+02 Score=27.40 Aligned_cols=107 Identities=26% Similarity=0.233 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HH----HHHhcCCC-----hhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHH
Q 012033 251 AIVNTHLCAATSLLVWVS-LD----MIVYKKSS-----VIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTM 320 (472)
Q Consensus 251 a~~NT~la~a~g~l~~~~-~~----~~~~~k~s-----~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~ 320 (472)
+-+|.++++-+ +=|-+ ++ .+..+|++ ++..--.+.+=|++..+--|-++|-+=++.-++=-.+...--
T Consensus 84 V~fnlllaA~~--vQWaiL~~G~~~~~~~gk~~i~le~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~~fEv~~~~~~e 161 (442)
T KOG3796|consen 84 VGFNLLLAALG--VQWAILLDGFLSQFPGGKFVIGLESIILADFSAASVLISMGAVLGKVSPAQLLIMALFEVTAFGINE 161 (442)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhCCCCeEEEEeHHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 44677777553 22221 22 22236653 333333455567888888899999999988877655443333
Q ss_pred HHHhhhhccccccccccCccccccchhhHHHHHHHHccccccc
Q 012033 321 MVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLL 363 (472)
Q Consensus 321 ~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~ 363 (472)
.++.+ .+++||.-+...+|.++.-.|.-..-.+-.++..
T Consensus 162 ~v~~n----~~~v~d~g~smtih~FgAYFGLavA~~l~k~~~~ 200 (442)
T KOG3796|consen 162 MVISN----IFNVNDHGGSMTIHAFGAYFGLAVAWCLYKPNLE 200 (442)
T ss_pred HHHHH----hccccccCCceEEEehhhhhhhhHhhhccCcccc
Confidence 33333 3899999999999999999999998888776554
No 31
>COG1299 FruA Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]
Probab=30.96 E-value=4e+02 Score=28.01 Aligned_cols=65 Identities=29% Similarity=0.541 Sum_probs=41.0
Q ss_pred hhhhhhhhcceeecC--CCCccChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCccccccchhhHHHHHHHH
Q 012033 281 GAVQGMITGLVCITP--GAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGL 356 (472)
Q Consensus 281 ~~~nG~lAGLVaita--~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~gl 356 (472)
.+.-|.++|+.+.+. ++++ .++++-|++||- ..++++|+ .++-|.+|.+-.-.+-=++|++.+++
T Consensus 77 gLapG~igg~~a~~~~g~aGF---lG~ii~GflAGy----~v~~l~k~----~~lP~~l~~i~~ili~Pll~~li~gl 143 (343)
T COG1299 77 GLAPGFIGGLLANSVIGGAGF---LGAIIAGFLAGY----VVKWLKKY----IELPKSLDGLKPILIIPLLGTLITGL 143 (343)
T ss_pred cccchHHHhHHhhcccccchh---hHHHHHHHHHHH----HHHHHHHH----hhCcHhhhhcccceeHHHHHHHHHHH
Confidence 457788888887753 2333 356666666664 44556554 44677777766666666677777775
No 32
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=30.85 E-value=3.3e+02 Score=28.72 Aligned_cols=94 Identities=22% Similarity=0.199 Sum_probs=48.3
Q ss_pred CCcHHHHHHHHHHHHHhhh--cccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH---HhcCCChhhhhhhhhhcc
Q 012033 216 PNNIIHMLGGAGFLWLGWT--GFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMI---VYKKSSVIGAVQGMITGL 290 (472)
Q Consensus 216 ~hs~~~~~lG~~lLw~GW~--gFN~gs~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~---~~~k~s~~~~~nG~lAGL 290 (472)
.|=+|+++.|.+++=++-. +.+.-. ......-...+|+.=.++.+...-++--|+ .-+|+- +.-|.++|+
T Consensus 20 S~MlP~VvagGil~ai~~~~~g~~~~~--~~~~~~~~~~l~~iG~~~f~lmvpvlaayIa~SIa~kpg---lapg~i~G~ 94 (359)
T PRK10478 20 SHMIPFVVAGGILLAVSVMLYGKGAVP--DAVADPNLKKLFDIGVAGLTLMVPFLAAYIGYSIADRSA---LAPCAIGAW 94 (359)
T ss_pred hHhHhHHHHHHHHHHHHHHHccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---ccHHHHHHH
Confidence 4557788888888776533 221100 000011222333322223332222222222 345554 577888888
Q ss_pred eeecCCCCccChhHHHHHHhhhhhHHH
Q 012033 291 VCITPGAGIVEPWGALLMGAMSGSIPW 317 (472)
Q Consensus 291 Vaita~a~~v~p~~A~iiG~iag~i~~ 317 (472)
.+...++++ .++++.|+++|-+..
T Consensus 95 ~a~~~~~GF---lGaii~G~laGy~v~ 118 (359)
T PRK10478 95 VGNSFGAGF---FGALIAGIIGGIVVH 118 (359)
T ss_pred HHhcCCcch---HHHHHHHHHHHHHHH
Confidence 777766655 488888888885543
No 33
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=30.45 E-value=3.1e+02 Score=26.59 Aligned_cols=120 Identities=14% Similarity=0.060 Sum_probs=59.5
Q ss_pred CCceehhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHH
Q 012033 183 AGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATS 262 (472)
Q Consensus 183 aG~~vVH~~gG~~aL~~a~~lG~R~~r~~~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g 262 (472)
-|+..+|..|+. ..++++|||.. .....+..++.+. +|++-+=+++. .|+..-+..+
T Consensus 63 ~gG~s~Hllg~~---l~~lllGp~~a----------~l~~~i~L~~qal-~fg~GGit~LG---------~N~l~m~~~~ 119 (214)
T TIGR00123 63 VTGSCSHPTGNG---LAVVLFGPAVT----------AVLAAIVLLFQAL-LLAHGGLTTLG---------ANGFSMGVIG 119 (214)
T ss_pred CCcchhhHhHHH---HHHHHHhHHHH----------HHHHHHHHHHHHH-HHhCCcHHHHH---------HHHHHHHHHH
Confidence 367899999986 56778898832 0111122222221 22332222232 5665555555
Q ss_pred HHHHHHHHHHHhcC---CChhhhhhhhhhcceeecCC-------CCc-cCh--------hHH-----HHHHhhhhhHHHH
Q 012033 263 LLVWVSLDMIVYKK---SSVIGAVQGMITGLVCITPG-------AGI-VEP--------WGA-----LLMGAMSGSIPWY 318 (472)
Q Consensus 263 ~l~~~~~~~~~~~k---~s~~~~~nG~lAGLVaita~-------a~~-v~p--------~~A-----~iiG~iag~i~~~ 318 (472)
.+++..+.+..+++ .++...++|.++..++.... ... ..+ ... +.+|++=|++...
T Consensus 120 ~~~~~~~~~~~~~~~l~~~v~~f~~gf~~~~l~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~Eg~iT~~ 199 (214)
T TIGR00123 120 PFVGWIVYKLACRAGLRRDVAVFLAAMLGDLATYVVTSVQLALAFPIPHAGFTGSVVKFMGIFAYTQVPLAIAEGLLTVM 199 (214)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444443333221 23445566666555422100 000 000 111 2578888888888
Q ss_pred HHHHHhh
Q 012033 319 TMMVLHR 325 (472)
Q Consensus 319 ~~~~l~~ 325 (472)
...+++|
T Consensus 200 ~~~~l~~ 206 (214)
T TIGR00123 200 IYDYITK 206 (214)
T ss_pred HHHHHHH
Confidence 8888877
No 34
>PRK06265 cobalt transport protein CbiM; Validated
Probab=29.06 E-value=5.1e+02 Score=24.66 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=16.9
Q ss_pred cc-cccccccCCceehhhhHHHHHHHHHHHHc
Q 012033 174 FL-EPYIIDYAGGFVIHLSSGVSGFTAAYWVG 204 (472)
Q Consensus 174 wL-~lG~~DfaG~~vVH~~gG~~aL~~a~~lG 204 (472)
|+ +.+. |+..+|..|+. ..++++|
T Consensus 50 ~~~~~pi----~G~s~H~lg~~---l~~lllG 74 (199)
T PRK06265 50 SLIHVPI----GPTSVHLVLNG---LAGIVLG 74 (199)
T ss_pred HHhcCCC----CCcchHHhhHH---HHHHHHh
Confidence 44 6663 67899999986 4556667
No 35
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=28.70 E-value=3e+02 Score=28.77 Aligned_cols=49 Identities=18% Similarity=0.386 Sum_probs=31.6
Q ss_pred HHHhcCCChhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhh
Q 012033 271 MIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHR 325 (472)
Q Consensus 271 ~~~~~k~s~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~ 325 (472)
|-.-+|+-. .-|.+.|+++....+++ .++++.|++++.+.....++++|
T Consensus 84 ~Sia~k~g~---~pG~i~G~~~~~~~~Gf---lGgII~gilag~~~~~lek~ikK 132 (346)
T TIGR01427 84 YSIADRPGL---APGMIAGLIANNFNSGF---LGGIIAGFLAGYVVKGLQKYIKK 132 (346)
T ss_pred HHHccCcCC---cHHHHHHHHHHccccch---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 334567643 44999999998876665 37777777777655544444443
No 36
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=27.53 E-value=96 Score=28.96 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=38.0
Q ss_pred CCCcHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hhhhhhhhhhccee
Q 012033 215 PPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSS--VIGAVQGMITGLVC 292 (472)
Q Consensus 215 ~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~s--~~~~~nG~lAGLVa 292 (472)
++++..+..++..+.-.+.--+.+|+ +.....|...|.++.++.....+.+.. ....+.+.++++++
T Consensus 99 ~~y~~~~~~l~~~l~~~~fa~lfgg~-----------~~~~~~a~i~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a 167 (193)
T PF06738_consen 99 PRYPPWLVILAAGLASAAFALLFGGS-----------WIDMIVAFILGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLA 167 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 46788888888877766655444543 233455566666666655544333333 23345555555544
Q ss_pred ec
Q 012033 293 IT 294 (472)
Q Consensus 293 it 294 (472)
..
T Consensus 168 ~~ 169 (193)
T PF06738_consen 168 AL 169 (193)
T ss_pred HH
Confidence 43
No 37
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=26.16 E-value=94 Score=30.88 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHH--------hcCCChhhhhh---hhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHH
Q 012033 256 HLCAATSLLVWVSLDMIV--------YKKSSVIGAVQ---GMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMM 321 (472)
Q Consensus 256 ~la~a~g~l~~~~~~~~~--------~~k~s~~~~~n---G~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~ 321 (472)
+++...+++.++..+|-. .-.+|+.+..| +++||+|--.+.-++.+. -++++|.++|++|-..-.
T Consensus 224 l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si-~sillGflsg~iYavaks 299 (309)
T COG5070 224 LMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSI-FSILLGFLSGAIYAVAKS 299 (309)
T ss_pred HHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 455566666666665532 12356777665 789999999988887665 578999999999876543
No 38
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=22.22 E-value=80 Score=31.52 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=45.4
Q ss_pred CChhhhhhhhhhcceeecCCCCc---------cChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCcccccc
Q 012033 277 SSVIGAVQGMITGLVCITPGAGI---------VEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHA 344 (472)
Q Consensus 277 ~s~~~~~nG~lAGLVaita~a~~---------v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg 344 (472)
.|+.-...|.+.|.+..+..+-. .+++..++++++.+++..++- ..+..+|+++++-|.-..+|=||
T Consensus 166 iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~lGD-L~eS~iKR~~gvKDsg~liPGHG 241 (265)
T COG0575 166 ISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTLLILGLLLVLTSQLGD-LFESYIKRLLGIKDSGWLIPGHG 241 (265)
T ss_pred CCCCCchHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHccCCCCcCCCCCCcC
Confidence 57777777777776655443332 235778889999888887663 33434555699999777777776
No 39
>MTH00213 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=22.02 E-value=2.2e+02 Score=27.98 Aligned_cols=31 Identities=10% Similarity=0.342 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012033 390 KQFGYQIVGTAFITAWNAIVTSLICIFVSRL 420 (472)
Q Consensus 390 ~ql~~Ql~g~~~~~~~s~~~~~ii~~~l~~~ 420 (472)
.++..+.++++-+++|+.+++.+..+++-.+
T Consensus 42 ilLgAeFLA~iQILVYVGAIaVLFLFVIMLL 72 (239)
T MTH00213 42 IVLGMEFLGLIFLIVYVGAICIIFLFVIMMI 72 (239)
T ss_pred HHhccHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 5677899999999999999998888887654
No 40
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=21.18 E-value=55 Score=32.83 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=35.4
Q ss_pred ChhhhhhhhhhcceeecCCCC------ccChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCcccccc
Q 012033 278 SVIGAVQGMITGLVCITPGAG------IVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHA 344 (472)
Q Consensus 278 s~~~~~nG~lAGLVaita~a~------~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg 344 (472)
|+-....|.+.|....+..+. -.+|++|++.|++=++.-+++-..+.. +|+..++.|.-.-++=||
T Consensus 207 SPnKTveGl~GGilt~~~~~~~l~~lTp~~~lqa~~~~~~I~l~GF~GdlvmSa-iKRd~gvKD~G~li~GHG 278 (303)
T COG4589 207 SPNKTVEGLIGGILTTMIASAILGLLTPLNTLQALLAGLLIGLSGFCGDLVMSA-IKRDVGVKDSGKLLPGHG 278 (303)
T ss_pred CCcchHHHHhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhHHHHHH-HHhhcCCCcccccCCCCc
Confidence 444445555555444333222 135566666655554444444333332 445589999877777775
No 41
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=20.66 E-value=5.4e+02 Score=26.23 Aligned_cols=106 Identities=14% Similarity=0.089 Sum_probs=63.2
Q ss_pred HHHHHHHHHc--CCCCCCCCCCCC-CcHHHHHHHHHHHHHhhhccccc--ccccc--cchhhHHHHHHHHHHHHHHHHHH
Q 012033 195 SGFTAAYWVG--PRHSRDRHNFPP-NNIIHMLGGAGFLWLGWTGFNGG--SPLVA--GRIAALAIVNTHLCAATSLLVWV 267 (472)
Q Consensus 195 ~aL~~a~~lG--~R~~r~~~~~~~-hs~~~~~lG~~lLw~GW~gFN~g--s~~~~--~~~~~~a~~NT~la~a~g~l~~~ 267 (472)
.+|.++-+++ ||..|++-.+-. ..+.++.=|+.++-.+-+.|-.. +.+.- .-+...++.-|.++..+++..+.
T Consensus 64 lsL~vsrli~~~p~~~RF~~GfwhlEplvL~ing~ll~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~ 143 (314)
T COG3965 64 LSLLVSRLIAKDPRDARFPYGFWHLEPLVLAINGTLLALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAW 143 (314)
T ss_pred HHHHHHHHhccCCCccccCcchhhhhhhHhhhccHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHH
Confidence 3555665665 454454322111 12345566888877777776532 22221 12467888889999999988888
Q ss_pred HHHHHHhcCCCh-------hhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhH
Q 012033 268 SLDMIVYKKSSV-------IGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSI 315 (472)
Q Consensus 268 ~~~~~~~~k~s~-------~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i 315 (472)
...+..++..|. ...++++|+ .|+.+|++++..
T Consensus 144 ~~~r~nrr~~s~lIald~kqW~Mst~lS---------------~al~VaF~~a~~ 183 (314)
T COG3965 144 KLRRLNRRLKSPLIALDTKQWLMSTCLS---------------AALFVAFAAAWL 183 (314)
T ss_pred HHHhhhccCCCchhhhHHHHHHHHHHHH---------------HHHHHHHHHHHH
Confidence 887765443332 234555554 677888887754
Done!