Query 012033
Match_columns 472
No_of_seqs 145 out of 1201
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 20:17:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2h_A AMT-1, ammonium transpo 100.0 7E-109 2E-113 853.9 33.3 393 25-448 1-395 (399)
2 1u7g_A Probable ammonium trans 100.0 7E-102 2E-106 799.2 32.9 380 24-425 4-385 (385)
3 3b9w_A Ammonium transporter fa 100.0 5.1E-83 1.7E-87 661.1 27.4 342 42-446 25-378 (407)
4 3hd6_A Ammonium transporter RH 100.0 2.6E-77 8.9E-82 628.9 25.3 389 42-446 21-451 (490)
5 3b9w_A Ammonium transporter fa 74.6 29 0.00098 35.7 12.4 142 25-204 172-315 (407)
6 2b2h_A AMT-1, ammonium transpo 61.4 1.1E+02 0.0039 31.1 13.7 135 25-204 182-320 (399)
7 3hd6_A Ammonium transporter RH 50.5 99 0.0034 32.5 11.2 141 26-204 219-364 (490)
8 3uky_C Nuclear CAP-binding pro 30.5 23 0.00079 22.8 1.5 20 446-465 12-32 (32)
9 1u7g_A Probable ammonium trans 26.4 5.1E+02 0.017 26.1 14.1 139 24-205 192-334 (385)
10 3j1z_P YIIP, cation efflux fam 7.6 1.3E+03 0.045 21.6 9.8 28 285-312 165-192 (306)
No 1
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=100.00 E-value=7.2e-109 Score=853.89 Aligned_cols=393 Identities=32% Similarity=0.605 Sum_probs=362.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcccCcchhhh
Q 012033 25 NNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALS 104 (472)
Q Consensus 25 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fiG~~~~~~~ 104 (472)
+|+.|++|+|+|++|| ++|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++.++|+|..++++.
T Consensus 1 ~~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~~ 79 (399)
T 2b2h_A 1 MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALL 79 (399)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGGG
T ss_pred CCcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhhc
Confidence 3678999999999999 999999999999999999999999999999999999999999999999865689998554432
Q ss_pred cccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeeccccc-cccccccC
Q 012033 105 EKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL-EPYIIDYA 183 (472)
Q Consensus 105 ~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL-~lG~~Dfa 183 (472)
.+. + .-| .++++||++||++|++|++|+++||+|+.+|++|+++|+++||||++||+|++||| ++|++|||
T Consensus 80 ~~~--~-----~~~-~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~~GwL~~lG~~DFA 151 (399)
T 2b2h_A 80 SGV--K-----GED-LLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWGGGWLAKLGALDFA 151 (399)
T ss_dssp TTC--C-----THH-HHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHSSCHHHHTTCCCSS
T ss_pred cCC--C-----CCc-hhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheECchhHHhcCCcccc
Confidence 221 0 012 68999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CceehhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHH
Q 012033 184 GGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSL 263 (472)
Q Consensus 184 G~~vVH~~gG~~aL~~a~~lG~R~~r~~~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~ 263 (472)
||++||++||++||+++++||||++|+++++||||++++++|+++||+||||||+||++..+..++++++||++|+|+|+
T Consensus 152 Gs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag~ 231 (399)
T 2b2h_A 152 GGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVAG 231 (399)
T ss_dssp CTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHhcCCChhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCccccc
Q 012033 264 LVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTH 343 (472)
Q Consensus 264 l~~~~~~~~~~~k~s~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vH 343 (472)
++|+++++++ ||+|+..++||+|||||+|||+|++++||+|++||+++|++|+++. .+++| +|||||||++++|
T Consensus 232 l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~-~l~~k----l~iDD~l~a~~vH 305 (399)
T 2b2h_A 232 FVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAM-DFRIK----KKIDESLDAWAIH 305 (399)
T ss_dssp HHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHH----TTCCCTTCHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHH-HHHHH----cCCCCCCCceecc
Confidence 9999999999 9999999999999999999999999999999999999999999998 44444 8999999999999
Q ss_pred cchhhHHHHHHHHccccccccccCCCCCCCCcccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012033 344 AVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNL 423 (472)
Q Consensus 344 g~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~~l~~~~~L 423 (472)
|+||+||++++|+|++++.. +.+|++|+ +++|++.|++|++++++|+++.++++++++|++.+|
T Consensus 306 gv~Gi~G~l~~glfa~~~~~--------g~~Gl~~g--------~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~gl 369 (399)
T 2b2h_A 306 GIGGLWGSVAVGILANPEVN--------GYAGLLFG--------NPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGL 369 (399)
T ss_dssp HHHHHHHHHHHHHHCCHHHH--------SCCCGGGT--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred chhhHHHHHHHHHHcccccc--------CCCccccC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999999999999987542 12478885 248999999999999999999999999999999999
Q ss_pred CCChhHhhcc-ChhhhChhhhcccCC
Q 012033 424 RMNADDLEIG-DDAAHGEEAYALWGD 448 (472)
Q Consensus 424 Rv~~e~E~~G-D~~~hg~~ay~~~~~ 448 (472)
|+++|||++| |.+||||++|++.+.
T Consensus 370 Rv~~e~E~~GlD~~~hg~~ay~~~~~ 395 (399)
T 2b2h_A 370 RVSSQEEYVGLDLSQHEEVAYTLEHH 395 (399)
T ss_dssp BCCHHHHHHCHHHHHHCCCSCC----
T ss_pred CCCHHHHHhCCCHHHhCcccCCcccc
Confidence 9999999999 999999999997544
No 2
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=100.00 E-value=6.9e-102 Score=799.18 Aligned_cols=380 Identities=33% Similarity=0.571 Sum_probs=350.7
Q ss_pred ccccchhHHHHHHHHHHHHHHH-HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcccCcchh
Q 012033 24 WNNKADNAWQLTATTMVCLQSV-PGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVA 102 (472)
Q Consensus 24 ~~~~~d~~w~l~~~~lV~~~m~-~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fiG~~~~~ 102 (472)
.+|+.|+.|+|+|++|| ++|| |||+|+|+|+||+||++|+++||++++++++++||++||+++||++ ++|+|..+++
T Consensus 4 ~~~~~d~~w~l~~~~LV-~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~-~~~iG~~~~~ 81 (385)
T 1u7g_A 4 VADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWL 81 (385)
T ss_dssp CCCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTG
T ss_pred ccccccHHHHHHHHHHH-HHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CccccCcchh
Confidence 46789999999999999 9999 9999999999999999999999999999999999999999999987 6899986554
Q ss_pred hhcccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeeccccc-cccccc
Q 012033 103 LSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL-EPYIID 181 (472)
Q Consensus 103 ~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL-~lG~~D 181 (472)
+..+...++ .++++|+.++++||++||++|++|++|+++||+|+.+|++|+++|+++||||++||+|++||| ++|++|
T Consensus 82 ~l~~~~~~~-~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~~GwL~~lG~~D 160 (385)
T 1u7g_A 82 MLKNIELTA-VMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALD 160 (385)
T ss_dssp GGTTCCTTC-EETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHSSCHHHHHTCCC
T ss_pred hccCCCCcc-cccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhhhhhheeEcchhhhhcceee
Confidence 433321111 123688999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCceehhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHH
Q 012033 182 YAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAAT 261 (472)
Q Consensus 182 faG~~vVH~~gG~~aL~~a~~lG~R~~r~~~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~ 261 (472)
||||++||++||++||+++++||||++|+++++||||++++++|+++||+||||||+||++..+..++++++||++|+|+
T Consensus 161 FAGs~vVH~~gG~aaL~~a~~LG~R~g~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaa 240 (385)
T 1u7g_A 161 FAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAA 240 (385)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEecchHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhccchhHhHHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999888899999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCccc
Q 012033 262 SLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFH 341 (472)
Q Consensus 262 g~l~~~~~~~~~~~k~s~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~ 341 (472)
|+++|++++++++||+|+..++||+|||||+|||+|++++||+|++||+++|++|+++.+++++| +|||||||+++
T Consensus 241 g~l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~----l~iDD~l~a~~ 316 (385)
T 1u7g_A 241 AILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRL----LRVDDPCDVFG 316 (385)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH----HCSCCGGGHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHh----CCCCCCCCCEe
Confidence 99999999999999999999999999999999999999999999999999999999999988765 89999999999
Q ss_pred cccchhhHHHHHHHHccccccccccCCCCCCCCcccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012033 342 THAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLV 421 (472)
Q Consensus 342 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~~l~~~~ 421 (472)
+||+||+||++++|+|++++..+ .+..+|++|+ .|++.|+++++++++|+++.++++++++|++.
T Consensus 317 vHgv~Gi~G~l~~glfa~~~~~g-----~~~~~G~~~g----------~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~ 381 (385)
T 1u7g_A 317 VHGVCGIVGCIMTGIFAASSLGG-----VGFAEGVTMG----------HQLLVQLESIAITIVWSGVVAFIGYKLADLTV 381 (385)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGTC-----CCCCTTCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ecccccHHHHHHHHHhccccccC-----ccccCCcchh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999876421 1112355443 69999999999999999999999999999999
Q ss_pred cCCC
Q 012033 422 NLRM 425 (472)
Q Consensus 422 ~LRv 425 (472)
+|||
T Consensus 382 glRv 385 (385)
T 1u7g_A 382 GLRV 385 (385)
T ss_dssp CSBC
T ss_pred CCcC
Confidence 9997
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=100.00 E-value=5.1e-83 Score=661.13 Aligned_cols=342 Identities=19% Similarity=0.252 Sum_probs=303.8
Q ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcccCcchhhhcccccCCCCCCCCCcch
Q 012033 42 LQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMAD 121 (472)
Q Consensus 42 ~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fiG~~~~~~~~~~~~~~~~~~~~p~~~ 121 (472)
.++.+||+++++++ |||..+.+.+|++.. ...++|++++|.. +|.. ++++|..+
T Consensus 25 vMi~iGfGFL~~~L--rk~~~s~v~~n~l~~-a~~~QW~~l~~~~-------Gf~~----------------~g~ip~~~ 78 (407)
T 3b9w_A 25 AMLLVGFGFLMVFV--RRYGFSATTGTYLVV-ATGLPLYILLRAN-------GIFG----------------HALTPHSV 78 (407)
T ss_dssp HHHHHHHHHHGGGS--TTCHHHHHHHHHHHH-HHHHHHHHHHHHT-------TTTS----------------SCCCSSSH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHhcc-------cccC----------------CCcchHHH
Confidence 45567999999998 999999999999985 4788999999821 2211 24688999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeeccccc-cccccccCCceehhhhHHHHHHHHH
Q 012033 122 YVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL-EPYIIDYAGGFVIHLSSGVSGFTAA 200 (472)
Q Consensus 122 ~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL-~lG~~DfaG~~vVH~~gG~~aL~~a 200 (472)
+++||++||++|++|++|+++||+|+.+|++|+ +|.+++|||.+||+|++||+ ..|++|||||++||++||++||+++
T Consensus 79 ~~~fq~~Faa~t~~IvsGAvaeR~kf~~~li~~-~~~~~vY~~~~~wvw~gG~~~~~G~~DfAGs~vVH~~gG~~aLa~a 157 (407)
T 3b9w_A 79 DAVIYAEFAVATGLIAMGAVLGRLRVFQYALLA-LFIVPVYLLNEWLVLDNASGLTEGFQDSAGSIAIHAFGAYFGLGVS 157 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH-HHHHHHHHHHHHHHTTCTTSSCTTCCCTTCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH-HHHHHhccceeEEEeCCcchhhcceeeccCceEEEeCchHHHHHHH
Confidence 999999999999999999999999999999998 67899999999999998999 5699999999999999999999999
Q ss_pred HHHcCCCCCC-CCCCCCCcHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH-HhcCCC
Q 012033 201 YWVGPRHSRD-RHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMI-VYKKSS 278 (472)
Q Consensus 201 ~~lG~R~~r~-~~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~-~~~k~s 278 (472)
++||||++|+ +++++|||++++++|+++||+||||||+| +..+..++++++||++|+|+|+++|++++++ .+||+|
T Consensus 158 ~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~G--l~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~~ 235 (407)
T 3b9w_A 158 IALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATA--IVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKAS 235 (407)
T ss_dssp HHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHT--TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhh--hccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999997652 22489999999999999999999999999 4567789999999999999999999999998 789999
Q ss_pred hhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCccccccchhhHHHHHHHHcc
Q 012033 279 VIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLA 358 (472)
Q Consensus 279 ~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa 358 (472)
+..++||+|||||||||+|++++||+|++||+++|++|+++++++++++++++|||||||++++||+||+||++++|+|+
T Consensus 236 ~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa 315 (407)
T 3b9w_A 236 IVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIV 315 (407)
T ss_dssp HHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999988888889999999999999999999999999998
Q ss_pred ccccccccCCCCCCCCcccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHhhcc-----
Q 012033 359 KPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIG----- 433 (472)
Q Consensus 359 ~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~~l~~~~~LRv~~e~E~~G----- 433 (472)
.+. . ..|++|++++++|+++.++++++++|+ |+++|+|..|
T Consensus 316 ~~~----------------------------~--~~Ql~g~~~~~~~s~v~~~i~~~il~~----r~~~e~e~~g~~~we 361 (407)
T 3b9w_A 316 PGI----------------------------A--VAQLTGIGITLALALIGGVIAGALIKL----TGTTKQAYEDSHEFI 361 (407)
T ss_dssp TTC----------------------------H--HHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCSSTTCGGGTSS
T ss_pred cCC----------------------------c--HHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCHHHHcCCccccc
Confidence 531 1 159999999999999999999999998 9999999998
Q ss_pred ----ChhhhChhhhccc
Q 012033 434 ----DDAAHGEEAYALW 446 (472)
Q Consensus 434 ----D~~~hg~~ay~~~ 446 (472)
|..||||++||++
T Consensus 362 ~p~ld~~~hg~~ayp~~ 378 (407)
T 3b9w_A 362 HLAGPEDEHKAERLVLE 378 (407)
T ss_dssp SCCCGGGC---------
T ss_pred CccccHHHhchhhccch
Confidence 8899999999876
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-77 Score=628.86 Aligned_cols=389 Identities=20% Similarity=0.248 Sum_probs=321.9
Q ss_pred HHHHHHHHHhhhccccchhHHH-----------------HHHHHHHHHHHH-HHHHHHHhhhhhhcCCCCCcccCcchhh
Q 012033 42 LQSVPGLVILYGSMVKKKWAVN-----------------SAFMAFYAFAVV-LVCWVLWAHQMAFGSALIPLMGKPDVAL 103 (472)
Q Consensus 42 ~~m~~GfalleaG~vr~kn~~~-----------------~l~~~~~~~~v~-~i~w~~~Gy~lafg~~~~~fiG~~~~~~ 103 (472)
++.|..+..+++=+||+++..+ .....+..++.+ .+++..+||.++|-+++ +|.....+++
T Consensus 21 ~~~q~~~ivlf~~fv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~Yp~fqDv~vMi~~GfGFLmtflkry-g~ssv~~n~l 99 (490)
T 3hd6_A 21 LLLQVIMVILFGVFVRYDFEADAHWWSERTHKNLSDMENEFYYRYPSFQDVHVMVFVGFGFLMTFLQRY-GFSAVGFNFL 99 (490)
T ss_dssp HHHHHHHHHHHHHHEECCCC------------------CHHHHHHHHHHHHHHHHHTHHHHHGGGSTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHhhheeEEecCCCCccccccccccccccccchhhhcCccchhHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 7788999999998888864221 244568889988 77888999999999987 3433333321
Q ss_pred -----------hcccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeecc
Q 012033 104 -----------SEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGG 172 (472)
Q Consensus 104 -----------~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~ 172 (472)
.++++ ....++++|..++++||++||++|++|++||++||+|+.+|++|+++ .+++||+. ||+
T Consensus 100 ~~a~~~Qwa~l~~g~~-~~~~~g~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~k~~~~li~~~l-~~~vY~~~-~w~--- 173 (490)
T 3hd6_A 100 LAAFGIQWALLMQGWF-HFLQDRYIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFF-QVTLFAVN-EFI--- 173 (490)
T ss_dssp HHHHHHHHHHHHHHHT-TCBTTTBEECCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-HHHHHHHH-HHH---
T ss_pred HHHHHHHHHHHHHHHh-ccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH-HHHHHhhh-HHH---
Confidence 23332 22235789999999999999999999999999999999999999976 57899984 665
Q ss_pred ccc-cccccccCCceehhhhHHHHHHHHHHHHcCCC---CCCCCCCCCCcHHHHHHHHHHHHHhhhcccccccccccchh
Q 012033 173 GFL-EPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRH---SRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIA 248 (472)
Q Consensus 173 GwL-~lG~~DfaG~~vVH~~gG~~aL~~a~~lG~R~---~r~~~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~ 248 (472)
|| ++|++|||||++||++||++||+++++||||. ++.+++.+|||++++++|+++||+||||||+|++.. +..+
T Consensus 174 -~L~~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R~~~~~~~~~~~~~hn~~~a~LGt~lLW~GWfGFN~gs~~~-~~~~ 251 (490)
T 3hd6_A 174 -LLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISYH-GDSQ 251 (490)
T ss_dssp -HHTTSCCCCTTCTTTTHHHHHHHHHHHHHHTCCTTGGGGTTTSSCCHHHHHHHHHHHHHHHHHHHHHTTTTCSS-HHHH
T ss_pred -HHhccCceeecCceeeeHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhchhhhcc-chHH
Confidence 57 89999999999999999999999999999983 344567889999999999999999999999998753 5667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HhcCCChhhhhhhhhhcceeecCCCC-ccChhHHHHHHhhhhhHHHHHHHHHhh
Q 012033 249 ALAIVNTHLCAATSLLVWVSLDMI--VYKKSSVIGAVQGMITGLVCITPGAG-IVEPWGALLMGAMSGSIPWYTMMVLHR 325 (472)
Q Consensus 249 ~~a~~NT~la~a~g~l~~~~~~~~--~~~k~s~~~~~nG~lAGLVaita~a~-~v~p~~A~iiG~iag~i~~~~~~~l~~ 325 (472)
.++++||++|+|+|+++|++++++ .+||+|+..++||+|||||||||+|+ +++||+|++||+++|++|+++++++++
T Consensus 252 ~~a~~NT~lAaAag~lt~~~~s~l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l~~ 331 (490)
T 3hd6_A 252 HRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTP 331 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 899999999999999999999997 47999999999999999999999999 699999999999999999999998776
Q ss_pred hhccccccccccCccccccchhhHHHHHHHHccccccccccCCCCCCCCcccccc-----cCCccchhHHHHHHHHHHHH
Q 012033 326 RLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSL-----FNGQIEFGFKQFGYQIVGTA 400 (472)
Q Consensus 326 ~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~g~-----~~g~~~~~~~ql~~Ql~g~~ 400 (472)
++|+|+|||||||++++||+||+||++++|+|+...... ..+.+|++|.. .+++ .+.+|++.|++|++
T Consensus 332 ~l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa~~~~~~-----~~g~~Gl~~~f~~~~~~gg~--~~~~ql~~Ql~gv~ 404 (490)
T 3hd6_A 332 FLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAASASLE-----VYGKEGLVHSFDFQGFNGDW--TARTQGKFQIYGLL 404 (490)
T ss_dssp HHHHHHCCCCTTCHHHHTHHHHHHHHHHHHHHHHC---------------------------CH--HHHHHHHHHHHHHH
T ss_pred HHHHHCCCCccccchHHhhHHHHHHHHHHHHHhcccccc-----ccccCcceeccccccccCCc--chHHHHHHHHHHHH
Confidence 666779999999999999999999999999998754221 11224665410 0111 13589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChhHhhcc-ChhhhChhhhccc
Q 012033 401 FITAWNAIVTSLICIFVSRLVNLRMNADDLEIG-DDAAHGEEAYALW 446 (472)
Q Consensus 401 ~~~~~s~~~~~ii~~~l~~~~~LRv~~e~E~~G-D~~~hg~~ay~~~ 446 (472)
++++|+++.++++++++|+...+|+++|+|..| |..|+.++.|+.+
T Consensus 405 ~~~~~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~~~~~~~ 451 (490)
T 3hd6_A 405 VTLAMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEGNSTVY 451 (490)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCCCTTTC---
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeecCccccccc
Confidence 999999999999999999999999999999999 9999999888654
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=74.56 E-value=29 Score=35.68 Aligned_cols=142 Identities=13% Similarity=0.073 Sum_probs=87.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcccCcchhhh
Q 012033 25 NNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALS 104 (472)
Q Consensus 25 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fiG~~~~~~~ 104 (472)
+.+-+..+.++.+.+. ++--+| |.+|+.....+..+++...++.+.+.+.|.++-+-+-.|+-.
T Consensus 172 ~~~hn~~~~~lGt~lL-W~GWfG---FN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~~------------ 235 (407)
T 3b9w_A 172 SDATSDRFSMLGSMVL-WLFWPS---FATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKAS------------ 235 (407)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHH---HHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC------------
T ss_pred CCCCCHHHHHHHHHHH-HHHHHh---hhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCC------------
Confidence 4456677777777766 664444 577754444566677888899999999998876654222210
Q ss_pred cccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeeccccc--ccccccc
Q 012033 105 EKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL--EPYIIDY 182 (472)
Q Consensus 105 ~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL--~lG~~Df 182 (472)
...+.+. +.+-....++-++=+++..-++..++ +++++.....+. .-+| ++++.|-
T Consensus 236 ----------------~~~~~nG---~LAGLVAITa~~~~v~p~~A~iIG~i-aG~i~~~~~~~l--~~~l~~~l~iDD~ 293 (407)
T 3b9w_A 236 ----------------IVDMANA---ALAGGVAIGSVCNIVGPVGAFVIGLL-GGAISVVGFVFI--QPMLESKAKTIDT 293 (407)
T ss_dssp ----------------HHHHHHH---TTHHHHHHTTTTTTSCHHHHHHHHHH-HHHHHHHHHHTH--HHHHHHHSCCCCT
T ss_pred ----------------HHHHHHh---hhhhhheeccCCCCCCHHHHHHHHHH-HHHHHHHHHHHH--HHHHHhcCCCCCC
Confidence 0111122 22222223333355777777777744 555554432211 1234 5799999
Q ss_pred CCceehhhhHHHHHHHHHHHHc
Q 012033 183 AGGFVIHLSSGVSGFTAAYWVG 204 (472)
Q Consensus 183 aG~~vVH~~gG~~aL~~a~~lG 204 (472)
-|.-.||..+|+.|..++-+..
T Consensus 294 l~a~~vHgv~Gi~G~l~~glfa 315 (407)
T 3b9w_A 294 CGVHNLHGLPGLLGGFSAILIV 315 (407)
T ss_dssp TCHHHHTTHHHHHHHHHHHHHS
T ss_pred CCCeecchHHHHHHHHHHHHHc
Confidence 9999999999999988876664
No 6
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=61.38 E-value=1.1e+02 Score=31.09 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=86.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhccccchh--HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcccCcchh
Q 012033 25 NNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKW--AVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVA 102 (472)
Q Consensus 25 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn--~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fiG~~~~~ 102 (472)
+.+-+..+.++.+.+. ++--+| |++|..-..| +..+++...++.+.+.+.|.++-+-. ++..
T Consensus 182 ~~~hn~~~~~lG~~lL-W~GWfG---FN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~--gk~~---------- 245 (399)
T 2b2h_A 182 IEPHSIPLTLIGAALL-WFGWFG---FNGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK--GKPG---------- 245 (399)
T ss_dssp CCCSCHHHHHHHHHHH-HHHHHH---HHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCCC----------
T ss_pred CCCCCHHHHHHHHHHH-HHHHHh---hcHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--cCCC----------
Confidence 4456777788877766 666555 5666554433 45567777888888999998887654 3310
Q ss_pred hhcccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeeccccc--ccccc
Q 012033 103 LSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL--EPYII 180 (472)
Q Consensus 103 ~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL--~lG~~ 180 (472)
.....+. +.+-.....+-++=+++..-++..++ +++++.... ++ ++++.
T Consensus 246 ------------------~~~~~nG---~lAGLVaITa~~~~v~p~~A~iiG~i-ag~i~~~~~-------~l~~kl~iD 296 (399)
T 2b2h_A 246 ------------------SLGIVSG---AIAGLAAITPAAGFVDVKGAIVIGLV-AGIVCYLAM-------DFRIKKKID 296 (399)
T ss_dssp ------------------HHHHHHH---HHHHHHHHTTTTTTCCHHHHHHHHHH-HHHHHHHHH-------HHHHHTTCC
T ss_pred ------------------HHHHHHH---HHHhhhhhccccccCCHHHHHHHHHH-HHHHHHHHH-------HHHHHcCCC
Confidence 0111222 22222223444466777777777744 555554432 34 78999
Q ss_pred ccCCceehhhhHHHHHHHHHHHHc
Q 012033 181 DYAGGFVIHLSSGVSGFTAAYWVG 204 (472)
Q Consensus 181 DfaG~~vVH~~gG~~aL~~a~~lG 204 (472)
|--|.-.||..+|..|..++-+..
T Consensus 297 D~l~a~~vHgv~Gi~G~l~~glfa 320 (399)
T 2b2h_A 297 ESLDAWAIHGIGGLWGSVAVGILA 320 (399)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCceeccchhhHHHHHHHHHHc
Confidence 999999999999999888776654
No 7
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=50.50 E-value=99 Score=32.49 Aligned_cols=141 Identities=13% Similarity=0.097 Sum_probs=82.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcCCCCCcccCcchhh
Q 012033 26 NKADNAWQLTATTMVCLQSVPGLVILYGSMVKK-KWAVNSAFMAFYAFAVVLVCWVLWAHQMA-FGSALIPLMGKPDVAL 103 (472)
Q Consensus 26 ~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~-kn~~~~l~~~~~~~~v~~i~w~~~Gy~la-fg~~~~~fiG~~~~~~ 103 (472)
.+-+..+.++.+.+. ++--+|| ++|+... ..+..+++...++.+.+++.|.++-+-.. .|+-
T Consensus 219 ~~hn~~~a~LGt~lL-W~GWfGF---N~gs~~~~~~~~~a~~NT~lAaAag~lt~~~~s~l~~~~gK~------------ 282 (490)
T 3hd6_A 219 VYQSDLFAMIGTLFL-WMYWPSF---NSAISYHGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKL------------ 282 (490)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHHH---TTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC------------
T ss_pred CCCCHHHHHHHHHHH-HHHHHhh---chhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------
Confidence 345677778877777 7766665 5777653 33445677778888888999987755431 1210
Q ss_pred hcccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhc-ccchhHHHHHHHHHhhhhhccccceeeccccc--ccccc
Q 012033 104 SEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLG-RMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL--EPYII 180 (472)
Q Consensus 104 ~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavae-R~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL--~lG~~ 180 (472)
. ...+.+.+ .+-....++-++ =..+..-++..++ +++++.....+. .-+| ++++.
T Consensus 283 --------------s--~~~~~nG~---LAGLVAIT~~a~~~v~P~~AliIG~i-aG~i~~~~~~~l--~~~l~~kl~iD 340 (490)
T 3hd6_A 283 --------------D--MVHIQNAT---LAGGVAVGTAAEMMLMPYGALIIGFV-CGIISTLGFVYL--TPFLESRLHIQ 340 (490)
T ss_dssp --------------C--HHHHHHGG---GHHHHHTTTTTTTCSCHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHCCC
T ss_pred --------------C--HHHhhhce---eeeEEEEccCcccccCHHHHHHHHHH-HHHHHHHHHHHh--HHHHHHHCCCC
Confidence 0 01111111 122222223334 2456666666633 445444322211 1134 67999
Q ss_pred ccCCceehhhhHHHHHHHHHHHHc
Q 012033 181 DYAGGFVIHLSSGVSGFTAAYWVG 204 (472)
Q Consensus 181 DfaG~~vVH~~gG~~aL~~a~~lG 204 (472)
|--|.-.||..+|+.|..++-+..
T Consensus 341 D~lgv~~vHGv~Gi~G~l~~glfa 364 (490)
T 3hd6_A 341 DTCGINNLHGIPGIIGGIVGAVTA 364 (490)
T ss_dssp CTTCHHHHTHHHHHHHHHHHHHHH
T ss_pred ccccchHHhhHHHHHHHHHHHHHh
Confidence 999999999999999887765543
No 8
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=30.50 E-value=23 Score=22.78 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=15.3
Q ss_pred cCCCCCCCCCC-CCCCCCCCC
Q 012033 446 WGDGEKLPKTP-RLRIPPRIP 465 (472)
Q Consensus 446 ~~~~~~~~~~~-~~~~~~~~~ 465 (472)
+.|++.|.+.+ |..+++|||
T Consensus 12 fd~ddgYrDfrPR~pKRQR~P 32 (32)
T 3uky_C 12 FDEDENYRDFRPRMPKRQRIP 32 (32)
T ss_pred CccccccccccccccccccCC
Confidence 34566777777 888999886
No 9
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=26.43 E-value=5.1e+02 Score=26.07 Aligned_cols=139 Identities=14% Similarity=0.046 Sum_probs=87.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhhhccccch--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcccCcch
Q 012033 24 WNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKK--WAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDV 101 (472)
Q Consensus 24 ~~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~k--n~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fiG~~~~ 101 (472)
.+.+-|..+.++.+.+. ++--+| |++|..-.. .+..+++...++.+.+.+.|.++-+-. .++-
T Consensus 192 ~~~~hn~~~~~lGt~lL-W~GWfG---FN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~-~gk~---------- 256 (385)
T 1u7g_A 192 AFKPHNLPMVFTGTAIL-YIGWFG---FNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWAL-RGLP---------- 256 (385)
T ss_dssp SCCGGGHHHHHHHHHHH-HHHHHH---HHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSSC----------
T ss_pred CCCCCCHHHHHHHHHHH-HHHHhh---hcchhhhhccchhHhHHHHHHHHHHHHHHHHHHHHHHH-cCCC----------
Confidence 34566778888888777 766666 456654433 344567777888888899998776541 2210
Q ss_pred hhhcccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeeccccc--cccc
Q 012033 102 ALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL--EPYI 179 (472)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL--~lG~ 179 (472)
. ..-..+. +.+-.....+-++-+++..-++..++ +++++.... -+| ++++
T Consensus 257 -----------------~-~~~~~nG---~lAGLVaITa~~~~v~p~~A~iiG~i-ag~i~~~~~------~~l~~~l~i 308 (385)
T 1u7g_A 257 -----------------S-LLGACSG---AIAGLVGVTPACGYIGVGGALIIGVV-AGLAGLWGV------TMLKRLLRV 308 (385)
T ss_dssp -----------------C-HHHHHHH---HHHHHHHHTTTTTTSCHHHHHHHHHH-HHHHHHHHH------HHHHHHHCS
T ss_pred -----------------C-HHHHHHH---HHHhhhhhccCCCCCCHHHHHHHHhH-HHHHHHHHH------HHHHHhCCC
Confidence 0 0111222 22222223344467777777777744 556555432 234 6899
Q ss_pred cccCCceehhhhHHHHHHHHHHHHcC
Q 012033 180 IDYAGGFVIHLSSGVSGFTAAYWVGP 205 (472)
Q Consensus 180 ~DfaG~~vVH~~gG~~aL~~a~~lG~ 205 (472)
.|--+.-.||..+|..|..++-+...
T Consensus 309 DD~l~a~~vHgv~Gi~G~l~~glfa~ 334 (385)
T 1u7g_A 309 DDPCDVFGVHGVCGIVGCIMTGIFAA 334 (385)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCEeecccccHHHHHHHHHhcc
Confidence 99999999999999998888766643
No 10
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=7.58 E-value=1.3e+03 Score=21.64 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=17.5
Q ss_pred hhhhcceeecCCCCccChhHHHHHHhhh
Q 012033 285 GMITGLVCITPGAGIVEPWGALLMGAMS 312 (472)
Q Consensus 285 G~lAGLVaita~a~~v~p~~A~iiG~ia 312 (472)
|++.|++..--+-.+..|..+++++++-
T Consensus 165 ~vli~~~~~~~g~~~~Dpi~ai~Ia~~I 192 (306)
T 3j1z_P 165 AVLLALVLSQYGWWWADGLFAVLIACYI 192 (306)
T ss_dssp TCCCTTSSCCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcchhhhHHHHHHHHHH
Confidence 3444444444455578899998887653
Done!