RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 012033
(472 letters)
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter. The Ammonium Transporter
(Amt) Family (TC 2.A.49) All functionally characterized
members of the Amt family are ammonia or ammonium uptake
transporters. Some, but not others, also transport
methylammonium. The mechanism of energy coupling, if
any, to methyl-NH2 or NH3 uptake by the AmtB protein of
E. coli is not entirely clear. NH4+ uniport driven by
the pmf, energy independent NH3 facilitation, and
NH4+/K+ antiport have been proposed as possible
transport mechanisms. In Corynebacterium glutamicum and
Arabidopsis thaliana, uptake via the Amt1 homologues of
AmtB has been reported to be driven by the pmf
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 403
Score = 329 bits (847), Expect = e-109
Identities = 146/422 (34%), Positives = 218/422 (51%), Gaps = 27/422 (6%)
Query: 30 NAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFG 89
AW L A +V PG +LY +V+ K +N FA+ + W L+ + +AFG
Sbjct: 1 TAWLLIAAALVFFM-QPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFG 59
Query: 90 SALI--PLMGKPDVALSEKYLLEPSG-DGKVPMADYVFFQFAFAAITVVLLAGSLLGRMN 146
+G L G +P + FQ FAAI +++G++ RM
Sbjct: 60 EDNPINGFIGTGGFGLKNFLYPGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMK 119
Query: 147 FYAWMIFVPLWLTFSYTIGAFTIWG-GGFLEPY-IIDYAGGFVIHLSSGVSGFTAAYWVG 204
F A+++F LW T Y A +WG GG+L ++D+AGG V+H+ GV+G AA +G
Sbjct: 120 FSAYLLFSVLWTTLVYPPVAHWVWGGGGWLYKLGVLDFAGGGVVHIVGGVAGLAAALVLG 179
Query: 205 PRHSRDRH--NFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATS 262
PR R P+N+ ++ G LW GW GFN GS L A AA A VNT+L AA
Sbjct: 180 PRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTAAYAAVNTNLAAAAG 239
Query: 263 LLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMV 322
L W+ +D + + K +++GA G++ GLV ITPG G+V PWGA+++G ++G + + +
Sbjct: 240 GLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSK 299
Query: 323 LHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFN 382
L ++L +DD L F H V GI G + +GL A P + + G GL
Sbjct: 300 LKKKL----KIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGVGTG------GLLGG--- 346
Query: 383 GQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDAA-HGEE 441
KQ G Q++G A I AW +VT +I + + + LR++ ++ +IG D A HGE
Sbjct: 347 -----NGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSEEEEKIGLDLAEHGEF 401
Query: 442 AY 443
AY
Sbjct: 402 AY 403
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and
metabolism].
Length = 409
Score = 321 bits (825), Expect = e-106
Identities = 149/423 (35%), Positives = 225/423 (53%), Gaps = 27/423 (6%)
Query: 26 NKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQ 85
+ D AW L + +V L PGL + YG +V+KK +N+ +F AFA+V + W+ +
Sbjct: 2 DSGDTAWMLLSAALVLLM-TPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYS 60
Query: 86 MAFGSALIPLMGKPD-VALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGR 144
+AFG +G D L+ +G +P + FQ FAAIT L++G++ R
Sbjct: 61 LAFGPDGNGFIGNLDQFFLNGLGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAER 120
Query: 145 MNFYAWMIFVPLWLTFSYTIGAFTIWGGG---FLEPYIIDYAGGFVIHLSSGVSGFTAAY 201
M F A+++F LW T Y A +WGGG L + D+AGG V+H+++G + AA
Sbjct: 121 MKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLALLGAL-DFAGGTVVHINAGFAALAAAL 179
Query: 202 WVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAAT 261
+G R PP+N+ ++ GA LW GW GFN GS L A +AALA VNT+L AA
Sbjct: 180 VLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAA 239
Query: 262 SLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMM 321
L W+ ++ + K S++GA G + GLV ITP AG V PWGAL++G ++G I ++ +
Sbjct: 240 GALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVK 299
Query: 322 VLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLF 381
+L ++L VDD L VF H V GI+G +L+G+ A P +
Sbjct: 300 LLKKKL----GVDDALDVFGVHGVGGIVGAILTGIFAAPAVG----------------GG 339
Query: 382 NGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIG-DDAAHGE 440
G G Q G Q++G + +VT +I + ++ LR++ ++ G D + HGE
Sbjct: 340 GGLFYGGGVQLGVQLLGVLVTIVYAFVVTFIILKVLKLIIGLRVSEEEELEGLDISEHGE 399
Query: 441 EAY 443
AY
Sbjct: 400 SAY 402
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family.
Length = 399
Score = 240 bits (614), Expect = 8e-75
Identities = 127/407 (31%), Positives = 196/407 (48%), Gaps = 29/407 (7%)
Query: 45 VPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALS 104
PG +L +V+ K +N + F A+ ++ + + + +AFG G +
Sbjct: 14 QPGFALLESGLVRSKNVLNILYKNFQDVAIGVLAYWGFGYSLAFGKR-YGFSG---FIGN 69
Query: 105 EKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTI 164
G +P + FQ FAA + +++G++ R+ F A+++F L T Y
Sbjct: 70 LGVSAAGIQWGTLPDGLFFLFQMMFAATAITIVSGAVAERIKFSAYLLFSALLGTLVYPP 129
Query: 165 GAFTIWG-GGFLEP--YIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSR---DRHNFPPNN 218
A +WG GG+L ++D+AG V+H+ G +G AA +GPR R P+N
Sbjct: 130 VAHWVWGEGGWLAKLGVLVDFAGSTVVHIFGGYAGLAAALVLGPRIGRFTDKNEAITPHN 189
Query: 219 IIHMLGGAGFLWLGWTGFNGGSPLVAGRIA-ALAIVNTHLCAATSLLVWVSLDMIVYKKS 277
+ + G LW GW GFN GS L A A A+A VNT+L AA L + + + K
Sbjct: 190 LPFAVLGTFLLWFGWFGFNAGSALTANGRARAIAAVNTNLAAAGGGLTALLISRLKTGKP 249
Query: 278 SVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTL 337
+++G G + GLV IT G+V PWGAL++G ++G + L +L +DD L
Sbjct: 250 NMLGLANGALAGLVAITAACGVVTPWGALIIGLIAGVVSVLGYKKLKEKL----GIDDPL 305
Query: 338 GVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIV 397
VF H V GI GG+ G+ A GL GFKQ G Q++
Sbjct: 306 DVFPVHGVGGIWGGIAVGIFA-----APYVPTSGIYGGLLGG--------GFKQLGVQLI 352
Query: 398 GTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDAA-HGEEAY 443
G A I A+ VT ++ + + + LR++ ++ E+G D A HGE AY
Sbjct: 353 GIAVILAYAFGVTFILGLLLGLTLGLRVSEEEEEVGLDVAEHGETAY 399
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional.
Length = 428
Score = 215 bits (550), Expect = 4e-65
Identities = 142/426 (33%), Positives = 218/426 (51%), Gaps = 23/426 (5%)
Query: 20 ASPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCW 79
A+P +KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + W
Sbjct: 22 AAPAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILW 81
Query: 80 VLWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAG 139
V++ + +AFG G + + + L + G + +V FQ +FA ITV L+ G
Sbjct: 82 VVYGYSLAFGEG-NAFFGNFNWLMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVG 139
Query: 140 SLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFT 198
+L R+ F A +IFV +WLT SY A +WGGG L +D+AGG V+H+++ V+G
Sbjct: 140 ALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASDGALDFAGGTVVHINAAVAGLV 199
Query: 199 AAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLC 258
AY +G R + F P+N+ + G L++GW GFN GS A IAALA VNT +
Sbjct: 200 GAYLLGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGAANEIAALAFVNTVVA 259
Query: 259 AATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWY 318
A ++L WV + + K S++GA G I GLV +TP G V GAL++G ++G +
Sbjct: 260 TAAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLW 319
Query: 319 TMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFY 378
+ +L R L VDD VF H V GI+G +L+G+ A +L G + G+
Sbjct: 320 GVTMLKRWL----RVDDPCDVFGVHGVCGIVGCILTGIFAASSL-----GGVGYAEGVTM 370
Query: 379 SLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-A 437
Q Q+ A W+ +V + V LR+ + G D +
Sbjct: 371 G----------HQVLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNS 420
Query: 438 HGEEAY 443
HGE AY
Sbjct: 421 HGENAY 426
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine
subtype. Members of this protein family are well
conserved subclass of putative ammonimum transporters,
belonging to the much broader set of
ammonium/methylammonium transporter described by
TIGR00836. Species with this transporter tend to be
marine bacteria. Partial phylogenetic profiling (PPP)
picks a member of this protein family as the single
best-scoring protein vs. a reference profile for the
marine environment Genome Property for a large number of
different query genomes. This finding by PPP suggests
that this transporter family represents an important
adaptation to the marine environment.
Length = 404
Score = 115 bits (289), Expect = 4e-28
Identities = 98/340 (28%), Positives = 150/340 (44%), Gaps = 49/340 (14%)
Query: 118 PMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEP 177
+D+ FFQ F A + +++G++ RM + +++F + F Y I WGGG+L+
Sbjct: 99 SGSDF-FFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWTWGGGWLDD 157
Query: 178 Y-IIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHN-----FPPNNIIHMLGGAGFLWL 231
D+AG ++H++ + +GPR + N P +N+ G LW+
Sbjct: 158 LGFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGTFILWM 217
Query: 232 GWTGFNGGSPLVAGRIA-----ALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGM 286
GW GFNGGS L +A A NT+ AA + + L +++ K+ + + G
Sbjct: 218 GWFGFNGGSQLALSDVADANAVARIFANTNAAAAGGAIAALLLTKLLFGKADLTMVLNGA 277
Query: 287 ITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVA 346
+ GLV IT P A L+GA+ G I +V L+ +DD +G H VA
Sbjct: 278 LAGLVAITAEPLTPSPLAATLIGAVGGVI-----VVFSIVLLDKLKIDDPVGAISVHGVA 332
Query: 347 GILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWN 406
GI G L P I G FG Q++G A I AW
Sbjct: 333 GIW-----GTLVVP------------------------ITNGDASFGAQLIGAATIFAW- 362
Query: 407 AIVTSLICIFVSRLV-NLRMNADDLEIGDDAAH-GEEAYA 444
VTSLI F+ + +R++ ++ G D A G EAY
Sbjct: 363 VFVTSLIVWFILKATMGIRVSEEEEYEGLDIAECGMEAYP 402
>gnl|CDD|218296 pfam04860, Phage_portal, Phage portal protein. Bacteriophage
portal proteins form a dodecamer and is located at a
five-fold vertex of the viral capsid. The portal complex
forms a channel through which the viral DNA is packaged
into the capsid, and exits during infection. The portal
protein is though to rotate during DNA packaging. Portal
proteins from different phage show little sequence
homology, so this family does not represent all portal
proteins.
Length = 348
Score = 34.2 bits (79), Expect = 0.14
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 15/89 (16%)
Query: 169 IWGGGFLEPYIIDYAGGFVIHL----SSGV----SGFTAAYWVGPRHSRDRHNFPPNNII 220
++G + I+ GG + L S V Y R FP ++++
Sbjct: 81 LFGNAYA--EIVRNGGGRPVELEPLPPSRVRVDRDDGRLYYRYTDDDGGVRRTFPADDVL 138
Query: 221 HMLGGAGFLWLGWTGFNGGSPLVAGRIAA 249
H+ G G G SPL A R +
Sbjct: 139 HLKNG-----DSLDGIYGLSPLEAARESI 162
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 30.6 bits (69), Expect = 2.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 176 EPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDR--HNFPPNNI 219
+P I++ GF+ H S +S F G S + +F PNNI
Sbjct: 603 DPNSIEHKVGFIFHCRSEISKFNYN---GNFISINNLIKSFTPNNI 645
>gnl|CDD|187746 cd09288, Photosystem-II_D2, D2 subunit of photosystem II (PS II).
Photosystem II (PS II), D2 subunit. PS II is a
multi-subunit protein found in the photosynthetic
membranes of plants, algae, and cyanobacteria. It
utilizes light-induced electron transfer and
water-splitting reactions to produce protons, electrons,
and molecular oxygen. The protons generated are
instrumental in ATP formation. Molecular dioxygen is
released as a by-product. PS II can be described as
containing two parts: the photochemical part and the
catalytic part. The photochemical portion promotes the
fast, efficient light-induced charge separation and
stabilization that occur when light is absorbed by
chlorophyll. The catalytic portion, where water is
oxidized, involves a cluster of Mn ions close to a
redox-active tyrosine residue. The Mn cluster and its
ligands form a functional unit called the
oxygen-evolving complex (OEC) or the water-oxidizing
complex (WOC). The D1 and D2 subunits are a pair of
intertwined polypeptides. They contain all the cofactors
involved directly in water oxidation and plastoquinone
reduction. D1 and D2 are highly homologous and are also
similar to the L and M proteins in bacterial
photosynthetic reaction centers.
Length = 339
Score = 29.6 bits (66), Expect = 3.6
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 316 PWYTMMVLHRRLVFFQSVDD-TLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGP 374
P + + + R ++FFQ + TL FH VAG+LG L + + ++ D G
Sbjct: 158 PSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGA 216
Query: 375 GLFYSLFNGQIEFGF-----KQFGYQIVGTAF 401
F + Q E + +F QI G AF
Sbjct: 217 NTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 248
>gnl|CDD|130222 TIGR01152, psbD, Photosystem II, DII subunit (also called Q(A)).
This model describes the Photosystem II, DII subunit
(also called Q(A)) in bacterial and its equivalents in
chloroplast of algae and higher plants. Photosystem II
is in many ways functionally equivalent to bacterial
reaction center. At the core of Photosystem II are
several light harvesting cofactors including
plastoquinones, pheophytins, phyloquinones etc. These
cofactors are intimately associated with the
polypeptides, which principally including subunits DI,
DII, Cyt.b, Cyt.f and iron-sulphur protein. Together
they participate in the electron transfer reactions that
lead to the net production of the reducting equivalents
in the form of NADPH, which are used for reduction of
CO2 to carbohydrates(C6H1206). Phosystem II operates
during oxygenic photosynthesis and principal electron
donor is H2O. Although no high resolution X-ray
structural data is presently available, recently a 3D
structure of the supercomplex has been described by
cryo-electron microscopy. Besides a huge body of
literature exits that describes function using a variety
of biochemical and biophysical techniques [Energy
metabolism, Electron transport, Energy metabolism,
Photosynthesis].
Length = 352
Score = 29.5 bits (66), Expect = 4.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 316 PWYTMMVLHRRLVFFQSVDD-TLGVFHTHAVAGILGGLL 353
P + + + R ++FFQ + TL FH VAG+LG L
Sbjct: 171 PSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAAL 209
>gnl|CDD|176949 CHL00004, psbD, photosystem II protein D2.
Length = 353
Score = 29.0 bits (65), Expect = 5.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 316 PWYTMMVLHRRLVFFQSVDD-TLGVFHTHAVAGILGGLL 353
P + + + R ++FFQ + TL FH VAG+LG L
Sbjct: 172 PSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAAL 210
>gnl|CDD|189053 cd09883, PIN_PhoHL-ATPase, PIN domain of bacterial Smg6-like
homologs with PhoH-like ATPase domains. PIN (PilT N
terminus) domain of Smg6-like bacterial proteins with
C-terminal PhoH-like ATPase domains and other similar
homologs are included in this family. Eukaryotic Smg5
and Smg6 nucleases are essential factors in
nonsense-mediated mRNA decay (NMD), a
post-transcriptional regulatory pathway that recognizes
and rapidly degrades mRNAs containing premature
translation termination codons. In vivo, the Smg6 PIN
domain elicits degradation of bound mRNAs, as well as,
metal ion dependent, degradation of single-stranded RNA,
in vitro. These PIN domains are homologs of flap
endonuclease-1 (FEN1)-like PIN domains, but lack the
extensive arch/clamp region and the H3TH
(helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region, seen in FEN1-like PIN
domains. PIN domains within this subgroup contain four
highly conserved acidic residues (putative
metal-binding, active site residues). Many of the
bacterial homologs in this group have an N-terminal PIN
domain and a C-terminal PhoH-like ATPase domain and are
predicted to be ATPases which are induced by phosphate
starvation.
Length = 147
Score = 27.9 bits (63), Expect = 6.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 415 IFVSRLVNLRMNADDLEI 432
I V++ +NLR+ AD L I
Sbjct: 119 ILVTKDINLRIKADALGI 136
>gnl|CDD|217299 pfam02949, 7tm_6, 7tm Odorant receptor. This family is composed of
7 transmembrane receptors, that are probably drosophila
odorant receptors.
Length = 313
Score = 28.4 bits (64), Expect = 8.6
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 348 ILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFG----FKQFGYQIVGTAFIT 403
I+ L L L++M+ ++ P +Y F E + + YQ++G
Sbjct: 71 IIYILAYALFCISALVSMVLSLERGLPLPYYLPFPFDWEASRPPYYIAYIYQVLGMTVTV 130
Query: 404 AWNAIVTSLICIFVSRLV-NLRMNADDLE-IGDDAAHGEE 441
N SL C F+ LV +LR+ LE +G D EE
Sbjct: 131 LQNIGSDSLFCSFLLFLVLHLRLLQLRLERLGLDPELSEE 170
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.466
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,483,591
Number of extensions: 2608068
Number of successful extensions: 3678
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3616
Number of HSP's successfully gapped: 122
Length of query: 472
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 372
Effective length of database: 6,502,202
Effective search space: 2418819144
Effective search space used: 2418819144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)