RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012033
(472 letters)
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein;
1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Length = 399
Score = 323 bits (831), Expect = e-107
Identities = 126/422 (29%), Positives = 213/422 (50%), Gaps = 33/422 (7%)
Query: 26 NKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQ 85
+ + AW L +T +V L VPG+ Y MV++K AVN ++F + + ++ W+ + +
Sbjct: 2 SDGNVAWILASTALVMLM-VPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYS 60
Query: 86 MAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRM 145
++FG+ + ++G + LL ++ +Q FAA+T+ +L ++ R
Sbjct: 61 VSFGNDISGIIGGLN-----YALLSGVK---GEDLLFMMYQMMFAAVTIAILTSAIAERA 112
Query: 146 NFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTAAYWVG 204
++++ LWLTF Y A +WGGG+L +D+AGG V+H+SSG + A +G
Sbjct: 113 KVSSFILLSALWLTFVYAPFAHWLWGGGWLAKLGALDFAGGMVVHISSGFAALAVAMTIG 172
Query: 205 PRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLL 264
R + ++ P++I L GA LW GW GFNGGS L A +A A+V T+ AA +
Sbjct: 173 KRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVAGF 232
Query: 265 VWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLH 324
VW+ + I K +G V G I GL ITP AG V+ GA+++G ++G + + M
Sbjct: 233 VWMVIGWI-KGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYL-AMDFR 290
Query: 325 RRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQ 384
+ +D++L + H + G+ G + G+LA P + GL +
Sbjct: 291 IKK----KIDESLDAWAIHGIGGLWGSVAVGILANPEV--------NGYAGLLFG----- 333
Query: 385 IEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIG-DDAAHGEEAY 443
+ Q++ A TA+ +VT ++ V V LR+++ + +G D + H E AY
Sbjct: 334 ---NPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQHEEVAY 390
Query: 444 AL 445
L
Sbjct: 391 TL 392
>1u7g_A Probable ammonium transporter; right handed helical bundle,
transmembrane helices, ammonia membrane protein, RH
protein, transport protein; HET: MSE BOG; 1.40A
{Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A*
1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A*
3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A
2nuu_A* 3c1j_A 2npk_A
Length = 385
Score = 316 bits (812), Expect = e-105
Identities = 127/400 (31%), Positives = 202/400 (50%), Gaps = 22/400 (5%)
Query: 26 NKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQ 85
+KADNA+ + T +V ++PG+ + YG +++ K ++ FA+V + WV++ +
Sbjct: 6 DKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYS 65
Query: 86 MAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRM 145
+A G G + + + L G + +V FQ +FA ITV L+ G+L R+
Sbjct: 66 LASGEG-NNFFGNINWLMLKNIELTAVM-GSIYQYIHVAFQGSFACITVGLIVGALAERI 123
Query: 146 NFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTAAYWVG 204
F A +IFV +WLT SY A +WGGG L + +D+AGG V+H+++ ++G AY +G
Sbjct: 124 RFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIG 183
Query: 205 PRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLL 264
R + F P+N+ + G L++GW GFN GS A IAALA VNT + A ++L
Sbjct: 184 KRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAIL 243
Query: 265 VWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLH 324
W+ + + S++GA G I GLV +TP G + GAL++G ++G + + +L
Sbjct: 244 GWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLK 303
Query: 325 RRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQ 384
R L VDD VF H V GI+G +++G+ A +L G G+
Sbjct: 304 RLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSL-----GGVGFAEGVTM------ 348
Query: 385 IEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLR 424
Q Q+ A W+ +V + V LR
Sbjct: 349 ----GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLR 384
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport,
rhesus protein, transpo protein; HET: BOG; 1.30A
{Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Length = 407
Score = 225 bits (575), Expect = 3e-69
Identities = 74/396 (18%), Positives = 129/396 (32%), Gaps = 39/396 (9%)
Query: 53 GSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALSEKYLLEPS 112
+ + +++N M F ++V + G+ L+ G P L +
Sbjct: 12 RLVAQYNYSINILAMLLVGFGFLMVFVRRYGFSATTGTYLVVATGLPLYILLRANGI--F 69
Query: 113 GDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGG 172
G P + FA T ++ G++LGR+ + + + L++ Y + + +
Sbjct: 70 GHALTPHSVDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLA-LFIVPVYLLNEWLVLDN 128
Query: 173 GFLEPY-IIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHN-FPPNNIIHMLGGAGFLW 230
D AG IH G + + R + + + G+ LW
Sbjct: 129 ASGLTEGFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLW 188
Query: 231 LGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMIVYK-KSSVIGAVQGMITG 289
L W F +V IVNT L + L L + +K K+S++ + G
Sbjct: 189 LFWPSFATA--IVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKASIVDMANAALAG 246
Query: 290 LVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGIL 349
V I IV P GA ++G + G+I + + L DT GV + H + G+L
Sbjct: 247 GVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLL 306
Query: 350 GGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIV 409
GG + L Q+ G A I
Sbjct: 307 GGFSAIL------------------------------IVPGIAVAQLTGIGITLALALIG 336
Query: 410 TSLICIFVSRLVNLRMNADDLEIGDDAA-HGEEAYA 444
+ + + +D A +E A
Sbjct: 337 GVIAGALIKLTGTTKQAYEDSHEFIHLAGPEDEHKA 372
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus,
glycoprotein, membran structural genomics, PSI-2,
protein structure initiative; HET: BOG; 2.10A {Homo
sapiens}
Length = 490
Score = 193 bits (493), Expect = 2e-56
Identities = 75/409 (18%), Positives = 131/409 (32%), Gaps = 19/409 (4%)
Query: 67 MAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQ 126
M F F ++ + + L+ G AL + D + +
Sbjct: 74 MVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQ-WALLMQGWFHFLQDRYIVVGVENLIN 132
Query: 127 FAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPYIIDYAGGF 186
F +V + G++LG+++ +I +T + D G
Sbjct: 133 ADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFILLNLLKV-----KDAGGSM 187
Query: 187 VIHLSSGVSGFTAAYWVGPRHSR---DRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLV 243
IH G T + R+ +R N + + + G FLW+ W FN
Sbjct: 188 TIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISYH 247
Query: 244 A-GRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCI-TPGAGIVE 301
+ A L A V +S + K ++ + G V + T ++
Sbjct: 248 GDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLM 307
Query: 302 PWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPN 361
P+GAL++G + G I + L L + DT G+ + H + GI+GG++ + A
Sbjct: 308 PYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAASA 367
Query: 362 LLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLV 421
L + F Q +QI G A A++ +I + RL
Sbjct: 368 SLEVYGKEGLVHSFDFQGFNGDWT--ARTQGKFQIYGLLVTLAM-ALMGGIIVGLILRLP 424
Query: 422 NLRMNADDLEIGDDA-----AHGEEAYALWGDGEKLPKTPRLRIPPRIP 465
+D+ D Y K +P P
Sbjct: 425 FWGQPSDENCFEDAVYWEMPEGNSTVYIPEDPTFKPSGPSVPSVPMVSP 473
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 5e-04
Identities = 37/173 (21%), Positives = 50/173 (28%), Gaps = 39/173 (22%)
Query: 322 VLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMY----------GPDK 371
VL+ L F++ L HA+A L L K L Y K
Sbjct: 83 VLNLCLTEFEN--CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 372 HGPGLF----------YSLFNGQ--IEFGFK--QFGYQIVGTAFITAWNAIVTSLICIFV 417
LF ++F GQ + F+ + YQ ++ +V LI
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT--------YHVLVGDLIKFSA 192
Query: 418 SRLVNLRMNADDLEIGDDAAHGEEAYALWGDG-EKLPKTPRLR-IPPRIPSIC 468
L L D E G W + P L IP P I
Sbjct: 193 ETLSELIRTTLDAE--KVFTQGLNILE-WLENPSNTPDKDYLLSIPISCPLIG 242
Score = 40.8 bits (95), Expect = 0.001
Identities = 73/444 (16%), Positives = 116/444 (26%), Gaps = 174/444 (39%)
Query: 11 LPEAFQPNEASPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFY 70
L E F P AD+ + LV F+ +
Sbjct: 33 LQEQFNKILPEPTEGFAADDE----------PTTPAELV--------------GKFLGYV 68
Query: 71 A----------FAVVLVCWVLWAHQMAFGSALIPLMGKPDV-ALSEKYLLEPSGDGKVPM 119
+ F VL L + + L G D+ AL+ K L D +
Sbjct: 69 SSLVEPSKVGQFDQVLNL-CLTEFENCY------LEGN-DIHALAAK--LLQENDTTLVK 118
Query: 120 ADYVFFQFAFAAITVV-----------LLAGSLLGRMNFYAWMIF-------------VP 155
+ + A + L G A IF
Sbjct: 119 TKELI-KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA--IFGGQGNTDDYFEELRD 175
Query: 156 LWLTFSYTIGAFTIWGGGFLEPYIID-------YAGGFVIH---------------LSSG 193
L+ T+ +G + L I + G I LS
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 194 VS----GFT--AAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRI 247
+S G A Y V + F P + L GA TG G +
Sbjct: 236 ISCPLIGVIQLAHYVVTAK----LLGFTPGELRSYLKGA-------TG------HSQGLV 278
Query: 248 AALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGM-ITGLVC--ITPGAGIVEPWG 304
A+AI S W S + V K A+ + G+ C P + P
Sbjct: 279 TAVAIA-----ETDS---WESFFVSVRK------AITVLFFIGVRCYEAYPNTSL-PP-- 321
Query: 305 ALLMGAMSGS--IPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNL 362
++L ++ + +P + M+ +++ + + + K N
Sbjct: 322 SILEDSLENNEGVP--SPML---------------------SISNLTQEQVQDYVNKTN- 357
Query: 363 LTMMYGPDKHGPG---LFYSLFNG 383
H P + SL NG
Sbjct: 358 --------SHLPAGKQVEISLVNG 373
Score = 30.8 bits (69), Expect = 1.1
Identities = 56/295 (18%), Positives = 88/295 (29%), Gaps = 92/295 (31%)
Query: 51 LYGS--MVKKKWAVNSA---FMAFYAFAVVLVCW----VLWAHQMAFGSALIPLMGKPDV 101
LY + + W N A F Y F+++ + L H FG G+
Sbjct: 1635 LYKTSKAAQDVW--NRADNHFKDTYGFSILDIVINNPVNLTIH---FG-------GEKGK 1682
Query: 102 ALSEKY---LLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS--LLGRMNFY--AWMIFV 154
+ E Y + E DGK+ F+ T LL F A +
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEK--IFKEINEHSTSYTFRSEKGLLSATQFTQPA--LT- 1737
Query: 155 PLWLTFSYTIGAFTIWGGGFLEPYIIDYAG-------------GFVIHLSSGVS-----G 196
F L P +AG V+ + S V G
Sbjct: 1738 ----LMEKAA--FEDLKSKGLIPADATFAGHSLGEYAALASLAD-VMSIESLVEVVFYRG 1790
Query: 197 FTAAYWVGPRHSRDRHNF-----PPNNIIHMLGGAGFLWL-----GWTG-------FNGG 239
T V PR R N+ P + ++ TG +N
Sbjct: 1791 MTMQVAV-PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN-- 1847
Query: 240 SP----LVAGRIAALAIVNTHLCAATSLLVWV---SLDMIVYKKSSVIGAVQGMI 287
+ AG + AL T++L ++ +D+I +KS + V+G +
Sbjct: 1848 VENQQYVAAGDLRALD-------TVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 30.0 bits (67), Expect = 2.4
Identities = 57/319 (17%), Positives = 94/319 (29%), Gaps = 110/319 (34%)
Query: 132 ITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIG-----AFTIWGGGFLEPYIIDYAGGF 186
+T V +A + +F+ + L F IG A+ L P I++ +
Sbjct: 278 VTAVAIAETDSWE-SFFVSVRKAITVLFF---IGVRCYEAY---PNTSLPPSILEDS--- 327
Query: 187 VIH--------LSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHM-LGGAGFLWLGWTGFN 237
+ + LS +S T V ++ + P + + L N
Sbjct: 328 LENNEGVPSPMLS--ISNLTQEQ-VQDYVNKTNSHLPAGKQVEISL------------VN 372
Query: 238 GGSPLV-AGRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITG----LVC 292
G LV +G +L +N L K + G Q I L
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLR----------------KAKAPSGLDQSRIPFSERKLKF 416
Query: 293 IT---PGAGIVEPW-GALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTH----- 343
P + P+ LL+ A L + V F + D + V+ T
Sbjct: 417 SNRFLP---VASPFHSHLLVPASDLINKD-----LVKNNVSFNAKDIQIPVYDTFDGSDL 468
Query: 344 --AVAGILGGLLSGLLAKP---NLLTMMYGPDKH----GPG-------LFYSLFNGQ--- 384
I ++ ++ P T H GPG L + +G
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQF--KATHILDFGPGGASGLGVLTHRNKDGTGVR 526
Query: 385 -I-----------EFGFKQ 391
I ++GFKQ
Sbjct: 527 VIVAGTLDINPDDDYGFKQ 545
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.045
Identities = 5/21 (23%), Positives = 7/21 (33%), Gaps = 4/21 (19%)
Query: 366 MYGPDKHGPGLFYSLFNGQIE 386
+Y D P L +E
Sbjct: 31 LYADDS-APAL---AIKATME 47
>2wjn_M Reaction center protein M chain; bacteriochlorophyll,
lipidic-sponge phase, photosynthesis, R center, electron
transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7
NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_M*
2x5u_M* 2x5v_M* 4ac5_M* 3t6e_M* 1prc_M* 1r2c_M* 1vrn_M*
1dxr_M* 2jbl_M* 2prc_M* 3d38_M* 3prc_M* 2i5n_M* 5prc_M*
6prc_M* 7prc_M* 3g7f_M* 3t6d_M*
Length = 324
Score = 30.4 bits (68), Expect = 1.3
Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 12/171 (7%)
Query: 257 LCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIP 316
L SL W + VY ++ +G + + L+G+ S +P
Sbjct: 119 LFMTLSLGSWW---IRVYSRARALGLGTHIAWNFAAAIFFVLCIGCIHPTLVGSWSEGVP 175
Query: 317 WYTMMVLHRRLVF-FQSVDDTLGVFHTHAVAGILGG-LLSGLLAKPNLLTMMYGPDKHGP 374
+ + F + + +H ++ G LL L +G D+
Sbjct: 176 FGIWPHIDWLTAFSIRYGNFYYCPWHGFSIGFAYGCGLLFAAHGATILAVARFGGDREIE 235
Query: 375 GLFYSLFNGQIE-------FGFKQFGYQIVGTAFITAWNAIVTSLICIFVS 418
+ + GF + + + +V++ + I ++
Sbjct: 236 QITDRGTAVERAALFWRWTIGFNATIESVHRWGWFFSLMVMVSASVGILLT 286
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics,
PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A
{Ruminococcus gnavus}
Length = 298
Score = 29.9 bits (68), Expect = 1.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 172 GGFLEPYIIDYAGGFVIHLSSGVSGF 197
++E Y D +V+ LS+ +SG
Sbjct: 86 ERYMESYHCDAERIYVVTLSAELSGS 111
>2wjn_L Reaction center protein L chain; bacteriochlorophyll,
lipidic-sponge phase, photosynthesis, R center, electron
transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7
NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L*
2x5u_L* 2x5v_L* 4ac5_L* 3t6e_L* 1r2c_L* 1prc_L* 1vrn_L*
2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 2i5n_L* 3t6d_L*
5prc_L* 6prc_L* 7prc_L* 1dxr_L*
Length = 274
Score = 29.2 bits (65), Expect = 2.6
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 2/121 (1%)
Query: 300 VEPWGALLMGAMSGSIPWYTMMVLHRRLVF-FQSVDDTLGVFHTHAVAGILGG-LLSGLL 357
++ + LL+G+ + P+ + L F +Q ++ H +V+ + + GL
Sbjct: 132 LQVFRPLLLGSWGHAFPYGILSHLDWVNNFGYQYLNWHYNPGHMSSVSFLFVNAMALGLH 191
Query: 358 AKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFV 417
L G + + G+ I A N +T
Sbjct: 192 GGLILSVANPGDGDKVKTAEHENQYFRDVVGYSIGALSIHRLGLFLASNIFLTGAFGTIA 251
Query: 418 S 418
S
Sbjct: 252 S 252
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM;
1.80A {Helicobacter pylori}
Length = 259
Score = 28.5 bits (63), Expect = 3.9
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 8/45 (17%)
Query: 186 FVIHLSSG--VSGFTAAYWVGP------RHSRDRHNFPPNNIIHM 222
+ G V GF AY + + HNF + H
Sbjct: 211 IALDFKEGRFVKGFGQAYDILGDKIAYVGDKGNPHNFAHKKLEHH 255
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 4.9
Identities = 23/130 (17%), Positives = 37/130 (28%), Gaps = 42/130 (32%)
Query: 193 GVSGFTAAYWV----GPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIA 248
GVS + P + + I M L + +G +P+ A
Sbjct: 1054 GVSALRGMFKDRFKDEPVQN---DILQESFINTMSAWVNMLLISSSGPI-KTPVGA---- 1105
Query: 249 ALAIVNTHLCAATSLLVWVSL----DMIVYKKSSVIGAVQGMITGLV--CITPGAGIVEP 302
C ATS+ S+ + I+ K+ + I G G+
Sbjct: 1106 ---------C-ATSV---ESVDIGVETILSGKARI------CIVGGYDDFQEEGSF---- 1142
Query: 303 WGALLMGAMS 312
M A S
Sbjct: 1143 -EFGNMKATS 1151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.466
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,795,587
Number of extensions: 489993
Number of successful extensions: 1098
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1064
Number of HSP's successfully gapped: 37
Length of query: 472
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 375
Effective length of database: 3,993,456
Effective search space: 1497546000
Effective search space used: 1497546000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.7 bits)