RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 012033
         (472 letters)



>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli
           [TaxId: 562]}
          Length = 383

 Score =  185 bits (470), Expect = 1e-54
 Identities = 123/401 (30%), Positives = 199/401 (49%), Gaps = 22/401 (5%)

Query: 26  NKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQ 85
           +KADNA+ +  T +V   ++PG+ + YG +++ K  ++        FA+V + WV++ + 
Sbjct: 4   DKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYS 63

Query: 86  MAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRM 145
           +A G           + L    L   +  G +    +V FQ +FA ITV L+ G+L  R+
Sbjct: 64  LASGEGNNFFGNINWLMLKNIEL--TAVMGSIYQYIHVAFQGSFACITVGLIVGALAERI 121

Query: 146 NFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTAAYWVG 204
            F A +IFV +WLT SY   A  +WGGG L  +  +D+AGG V+H+++ ++G   AY +G
Sbjct: 122 RFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIG 181

Query: 205 PRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLL 264
            R    +  F P+N+  +  G   L++GW GFN GS   A  IAALA VNT +  A ++L
Sbjct: 182 KRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAIL 241

Query: 265 VWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLH 324
            W+  +  +    S++GA  G I GLV +TP  G +   GAL++G ++G    + + +L 
Sbjct: 242 GWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLK 301

Query: 325 RRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQ 384
           R L       D   VF  H V GI+G +++G+ A  +L                 +   +
Sbjct: 302 RLLRVD----DPCDVFGVHGVCGIVGCIMTGIFAASSLG---------------GVGFAE 342

Query: 385 IEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRM 425
                 Q   Q+   A    W+ +V  +        V LR+
Sbjct: 343 GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383


>d1mgpa_ c.119.1.1 (A:) Hypothetical protein TM841 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 285

 Score = 26.9 bits (59), Expect = 5.0
 Identities = 19/129 (14%), Positives = 33/129 (25%), Gaps = 7/129 (5%)

Query: 174 FLEPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGW 233
           +L+    DY    V+ LSS +SG   +  +  +            +              
Sbjct: 76  YLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEVDIPVYVVDTLLASGAIPLPARVARE 135

Query: 234 TGFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMIVY-KKSSVIGAVQGMITGLVC 292
              NG +      I  +                  +    Y  K   +   QG +  L+ 
Sbjct: 136 MLENGAT------IEEVLKKLDERMKNKDFKAIFYVSNFDYLVKGGRVSKFQGFVGNLLK 189

Query: 293 ITPGAGIVE 301
           I     I  
Sbjct: 190 IRVCLHIEN 198


>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas
           viridis [TaxId: 1079]}
          Length = 323

 Score = 26.2 bits (58), Expect = 8.8
 Identities = 16/123 (13%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 306 LLMGAMSGSIPWYTMMVLHRRLVFFQSVDD-TLGVFHTHAVAGILGG-LLSGLLAKPNLL 363
            L+G+ S  +P+     +     F     +     +H  ++    G  LL        L 
Sbjct: 164 TLVGSWSEGVPFGIWPHIDWLTAFSIRYGNFYYCPWHGFSIGFAYGCGLLFAAHGATILA 223

Query: 364 TMMYGPDKHGPGLFYSLFNGQIEFGFKQ--FGYQIVGT------AFITAWNAIVTSLICI 415
              +G D+    +       +    F +   G+            +  +   +V++ + I
Sbjct: 224 VARFGGDREIEQITDRGTAVERAALFWRWTIGFNA-TIESVHRWGWFFSLMVMVSASVGI 282

Query: 416 FVS 418
            ++
Sbjct: 283 LLT 285


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.466 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,898,348
Number of extensions: 89845
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 35
Length of query: 472
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 383
Effective length of database: 1,185,626
Effective search space: 454094758
Effective search space used: 454094758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.2 bits)